BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] (247 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] gi|254039972|gb|ACT56768.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] Length = 247 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 247/247 (100%), Positives = 247/247 (100%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ Sbjct: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ Sbjct: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF Sbjct: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY Sbjct: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 Query: 241 FDSVEYS 247 FDSVEYS Sbjct: 241 FDSVEYS 247 >gi|315122856|ref|YP_004063345.1| tRNA pseudouridine synthase A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496258|gb|ADR52857.1| tRNA pseudouridine synthase A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 247 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/247 (82%), Positives = 222/247 (89%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MIRYC+IIEY+GSGY GWQRQKNG SIQG IEKAIFLVTGE + V+GAGRTDSGVHALRQ Sbjct: 1 MIRYCLIIEYDGSGYVGWQRQKNGVSIQGEIEKAIFLVTGESMTVYGAGRTDSGVHALRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDLVREWVP LCKALNA+L IS+ ISIL L +VD++FHARFSAIRRSYLYRIITRQ Sbjct: 61 VAHFDLVREWVPEKLCKALNAHLNISNDISILELCVVDEKFHARFSAIRRSYLYRIITRQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALEKGRAW PK LDCE MR+AAQHL+G+HDFTTFRS+ CQA SPIRTID D+N Sbjct: 121 APLALEKGRAWWFPKDLDCEMMRVAAQHLIGKHDFTTFRSVQCQALSPIRTIDRLDINRL 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++IEIRVVARSFLHTQIRSFVGSLKLVGD KWTS DL+KAL+AQDRK CGPL+P EGLY Sbjct: 181 GDMIEIRVVARSFLHTQIRSFVGSLKLVGDRKWTSDDLQKALKAQDRKACGPLSPSEGLY 240 Query: 241 FDSVEYS 247 FDSVEYS Sbjct: 241 FDSVEYS 247 >gi|222084710|ref|YP_002543239.1| tRNA pseudouridine synthase A [Agrobacterium radiobacter K84] gi|221722158|gb|ACM25314.1| tRNA pseudouridine synthase A [Agrobacterium radiobacter K84] Length = 266 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 157/247 (63%), Positives = 188/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ NG S+QG+IE+AI +TGE V GAGRTDSGVHA+ Q Sbjct: 2 MPRYRMTVEYDGIPYVGWQRQNNGPSVQGAIERAILSLTGETASVRGAGRTDSGVHAVGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ D ++ILN+ VD F ARFSAIRR YLYRII R Sbjct: 62 VTHADLSKEWKPHTLRNALNAHLRLAGDRVAILNVMEVDASFDARFSAIRRHYLYRIIVR 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE GRAW + K +D E M AAQ LVGRHDFTTFRS+HCQA+SP+RT+D DV Sbjct: 122 RAPLALEAGRAWWVAKDMDHEVMHTAAQTLVGRHDFTTFRSVHCQANSPVRTLDRLDVTR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+ AL+A+DRK CGP+APP+GL Sbjct: 182 SGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVRTALEARDRKACGPVAPPDGL 241 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 242 YFMQVDY 248 >gi|86356072|ref|YP_467964.1| tRNA pseudouridine synthase A [Rhizobium etli CFN 42] gi|86280174|gb|ABC89237.1| tRNA pseudouridine synthase A protein [Rhizobium etli CFN 42] Length = 267 Score = 332 bits (850), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 154/247 (62%), Positives = 193/247 (78%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ + +SIL+++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVAAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDDEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|327191110|gb|EGE58158.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CNPAF512] Length = 266 Score = 331 bits (849), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 154/247 (62%), Positives = 192/247 (77%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|190890088|ref|YP_001976630.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CIAT 652] gi|190695367|gb|ACE89452.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CIAT 652] Length = 266 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 152/247 (61%), Positives = 192/247 (77%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W P L A+NA+L+++ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKQWSPYQLQNAMNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|116250203|ref|YP_766041.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. viciae 3841] gi|115254851|emb|CAK05925.1| putative tRNA pseudouridine synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 272 Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 150/247 (60%), Positives = 190/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W P L ALNA+L+I+ + +S+L++ + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKDWSPYQLQNALNAHLRIAGERVSVLDVEAAPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVGRHDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 RGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALKARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMQVDY 247 >gi|15964174|ref|NP_384527.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti 1021] gi|307301319|ref|ZP_07581081.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti BL225C] gi|30913403|sp|Q92SH4|TRUA_RHIME RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15073350|emb|CAC41858.1| Probable tRNA pseudouridine synthase A [Sinorhizobium meliloti 1021] gi|306903775|gb|EFN34362.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti BL225C] Length = 247 Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 155/247 (62%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ NG S+QG+IEKA+ +T E V + GAGRTDSGVHA Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW L ALNA+L ++ + +SIL+++ F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKSYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK LD + M AAQ LVG HDFTTFRS HCQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATSPLRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APP+GL Sbjct: 181 AGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|241202830|ref|YP_002973926.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856720|gb|ACS54387.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 272 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 150/247 (60%), Positives = 190/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V+V GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGHSVQGAIEAAVLSLTGETVLVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ + +SIL + + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILEVEAAPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVG+HDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGKHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 NGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMQVDY 247 >gi|307317990|ref|ZP_07597427.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti AK83] gi|306896392|gb|EFN27141.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti AK83] Length = 247 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 155/247 (62%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ NG S+QG+IEKA+ +T E V + GAGRTDSGVHA Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW L ALNA+L ++ + +SIL+++ F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKSYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK LD + M AAQ LVG HDFTTFRS HCQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATSPLRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APP+GL Sbjct: 181 AGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALKARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|227820646|ref|YP_002824616.1| tRNA pseudouridine synthase A [Sinorhizobium fredii NGR234] gi|254764861|sp|C3MF26|TRUA_RHISN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|227339645|gb|ACP23863.1| tRNA pseudouridine synthase A [Sinorhizobium fredii NGR234] Length = 247 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 154/247 (62%), Positives = 186/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ+NG S+QG+IEKA+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW + ++ +SIL+ + V +F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKTHTLRNALNAHLALAAERVSILDAAEVPPEFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK+LD E M AAQHLVG HDFTTFRS HCQA+SP+RTID DV Sbjct: 121 RSPLALEARRAWWVPKTLDHEAMHEAAQHLVGHHDFTTFRSAHCQANSPLRTIDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APPEGL Sbjct: 181 SGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLKTALEARDRKACGPVAPPEGL 240 Query: 240 YFDSVEY 246 +F V+Y Sbjct: 241 FFMQVDY 247 >gi|209547671|ref|YP_002279588.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238057734|sp|B5ZN21|TRUA_RHILW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209533427|gb|ACI53362.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 268 Score = 324 bits (830), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 150/247 (60%), Positives = 190/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL + W P L ALNA+L+++ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKAWSPYQLQNALNAHLRLAGERVSILDVEAVAEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVGRHDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|150395284|ref|YP_001325751.1| tRNA pseudouridine synthase A [Sinorhizobium medicae WSM419] gi|166229839|sp|A6U5I6|TRUA_SINMW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150026799|gb|ABR58916.1| tRNA pseudouridine synthase A [Sinorhizobium medicae WSM419] Length = 247 Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 152/247 (61%), Positives = 188/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +I+EY+G+ Y GWQRQ NG S+QG+IEKA+ +TGE V V GAGRTDSGVHA Q Sbjct: 1 MPRFRLIVEYDGTDYVGWQRQDNGPSVQGAIEKAVLSLTGETVRVRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R W P L ALNA+L ++ + +SIL + F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTRAWKPYTLQNALNAHLSLAGERVSILEVEEAAADFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK+LD + M AAQ L+G HDFTTFRS +CQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKALDHDAMHEAAQRLLGHHDFTTFRSANCQATSPMRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF GSLKLVG+ KWT +L+ AL+A+DRK CGP+APP+GL Sbjct: 181 TGDLIEIRASAQSFLHNQIRSFAGSLKLVGESKWTPDNLQAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|325291802|ref|YP_004277666.1| tRNA pseudouridine synthase A [Agrobacterium sp. H13-3] gi|325059655|gb|ADY63346.1| tRNA pseudouridine synthase A [Agrobacterium sp. H13-3] Length = 266 Score = 318 bits (814), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 148/247 (59%), Positives = 188/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G+ YFGWQRQ NG S+QG++E A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGTPYFGWQRQDNGPSVQGALEAAVRSLTGETVSIRGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R+W P L ALNA+L ++ + +S+++++ V + F ARFSA+RR YLYRII R Sbjct: 61 VAHVDLSRDWAPYKLRNALNAHLAMAKEAVSVIDVTAVTEDFDARFSALRRHYLYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +A LALE RAW + K LD E M AAQ LVGRHDFTTFRS+HCQASSP+RT+D DV Sbjct: 121 KARLALEHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQASSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LK+ G+G T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRATAQSFLHNQIRSFAGTLKMAGEGSMTPEDVRAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMQVDY 247 >gi|218508236|ref|ZP_03506114.1| tRNA pseudouridine synthase A [Rhizobium etli Brasil 5] Length = 238 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 147/238 (61%), Positives = 185/238 (77%), Gaps = 1/238 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRITVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+ Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPD 238 >gi|222147430|ref|YP_002548387.1| tRNA pseudouridine synthase A [Agrobacterium vitis S4] gi|254789600|sp|B9JQX0|TRUA_AGRVS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221734420|gb|ACM35383.1| tRNA pseudouridine synthase A [Agrobacterium vitis S4] Length = 259 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 146/247 (59%), Positives = 182/247 (73%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ NG S+QG++E A+ +TGE V + GAGRTDSGVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQDNGPSVQGALEAAVLGLTGETVAIRGAGRTDSGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL+R+W+P L ALNA+L + ISIL V F ARFSA++R YLYRI++R Sbjct: 61 VAHVDLLRQWIPYKLRNALNAHLAQAGQAISILAAEAVPDAFDARFSALKRHYLYRIMSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + LALE RAW + K LD E M AAQ LVG HDFTTFRS+HCQA SP+RT+D DV+ Sbjct: 121 PSRLALEANRAWWVSKPLDHEAMHAAAQMLVGNHDFTTFRSVHCQAISPVRTLDRLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LK+ G+GK T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRASAQSFLHNQIRSFAGTLKMAGEGKMTPEDVRAALEARDRKACGPVAPPQGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|15887719|ref|NP_353400.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens str. C58] gi|42559844|sp|Q8UIC9|TRUA_AGRT5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15155280|gb|AAK86185.1| tRNA pseudouridine synthase I [Agrobacterium tumefaciens str. C58] Length = 266 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 146/247 (59%), Positives = 188/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G+ Y+GWQRQ+NG S+QG++E A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R+W P L ALNA+L ++ + +++L+ + V + F ARFSA+RR YLYRII R Sbjct: 61 VAHIDLSRDWEPYKLRNALNAHLAMAGEAVAVLDAAAVTEDFDARFSALRRHYLYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ LALE RAW + K LD E M AAQ LVGRHDFTTFRS+HCQA+SP+RT+D DV Sbjct: 121 KSRLALEHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LKL G+G T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRATAQSFLHNQIRSFAGTLKLAGEGGMTPDDVRAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMQVDY 247 >gi|182677494|ref|YP_001831640.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica ATCC 9039] gi|238691224|sp|B2IEW0|TRUA_BEII9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|182633377|gb|ACB94151.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica ATCC 9039] Length = 260 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 137/246 (55%), Positives = 176/246 (71%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQKNG S+Q IE A+ + G V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW P +L ALNA+++ + ++++ V + F ARFSAIRR YLYRII R+ Sbjct: 61 VAHADLAREWRPDVLRDALNAHMRPA-LVAVVAAEPVPETFDARFSAIRRHYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E GRAWL+ + LD M AAQ L GRHDF+TFR+ CQA+SPIRT++ DV + Sbjct: 120 APLTFEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASPIRTLERLDVQAV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LIEIR ARSFLH Q+RS VGSL++VG GKW++ DL AL+A DR+ CG +AP GLY Sbjct: 180 GDLIEIRASARSFLHHQVRSMVGSLEMVGSGKWSAGDLRAALEACDRRRCGMVAPAAGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTGVDY 245 >gi|163757847|ref|ZP_02164936.1| tRNA pseudouridine synthase A [Hoeflea phototrophica DFL-43] gi|162285349|gb|EDQ35631.1| tRNA pseudouridine synthase A [Hoeflea phototrophica DFL-43] Length = 255 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 141/250 (56%), Positives = 177/250 (70%), Gaps = 3/250 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+GSGY GWQRQ + SIQ +IE AI G+ V + GAGRTD+GVHA Q Sbjct: 1 MPRYRLDIEYDGSGYAGWQRQDDHPSIQQAIETAIHGFCGQAVSIRGAGRTDAGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL +W + A+NA+L+++ + ++IL V + F ARFSA RR Y+YRII R Sbjct: 61 VAHVDLENQWSDDTVRDAINAHLQMARERVAILAAREVPEDFDARFSATRRHYVYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 +APL +EK RA P+ LD E M AAQ LVGRHDFTTFRS+ CQA SP+R++D DV Sbjct: 121 RAPLVIEKNRALWSPRPLDAEAMHEAAQRLVGRHDFTTFRSVQCQADSPVRSLDRLDVTR 180 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 F LIEI ARSFLH QIRSF G+L+LVG+GKWT+ D++ AL+A+ RK CGP+A PE Sbjct: 181 GGFDGLIEIHATARSFLHNQIRSFAGTLRLVGEGKWTADDVQIALEARSRKACGPVAAPE 240 Query: 238 GLYFDSVEYS 247 GLYF V+Y Sbjct: 241 GLYFRQVDYD 250 >gi|218658453|ref|ZP_03514383.1| tRNA pseudouridine synthase A [Rhizobium etli IE4771] Length = 244 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 132/213 (61%), Positives = 166/213 (77%), Gaps = 1/213 (0%) Query: 35 IFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS-DTISILN 93 + +TGE V V GAGRTDSGVHA+ QV H DL +EW P L ALNA+L+++ + +SIL+ Sbjct: 13 VLSLTGETVSVRGAGRTDSGVHAMGQVIHVDLSKEWSPYQLQNALNAHLRLAGERVSILD 72 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 + V + F ARFSA+RR YLYRI++R+APLALE G+AW +PK+LD E M AAQ LVGRH Sbjct: 73 VEAVPEFFDARFSALRRHYLYRIVSRRAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRH 132 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 DF+TFRS HCQA+SP+RT+D DV G LIEIR A+SFLH QIRSF G+LKL G+GKW Sbjct: 133 DFSTFRSAHCQANSPVRTLDRLDVTRSGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKW 192 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 T D+E AL+A++RK CGP+APP+GLYF V+Y Sbjct: 193 TPDDVEAALEARNRKACGPVAPPDGLYFLQVDY 225 >gi|217977314|ref|YP_002361461.1| tRNA pseudouridine synthase A [Methylocella silvestris BL2] gi|254789643|sp|B8ENG8|TRUA_METSB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217502690|gb|ACK50099.1| tRNA pseudouridine synthase A [Methylocella silvestris BL2] Length = 248 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 138/246 (56%), Positives = 173/246 (70%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++IEY+G+ + GWQRQ NG S+Q +IE A+ TGE V +HGAGRTD+GVHA Q Sbjct: 1 MPRFKLLIEYDGAPFVGWQRQANGFSVQEAIETALGGFTGESVAIHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D R+W P +L A NA+L+ + I+IL VD +F ARFSA+RR YLY+II R+ Sbjct: 61 VAHVDFSRDWRPDVLRDAANAWLR-PNPIAILKAERVDDEFSARFSAVRRHYLYKIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L LE GR W I +SLD M AAQ L+G HDF+TFR CQA SP+RT++ FDV Sbjct: 120 ASLTLEAGRCWAIRRSLDAGAMHEAAQTLLGFHDFSTFRDSECQAESPLRTLERFDVLRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G IEI V ARSFLH+Q+RS VGSL VG GKW D+ +AL A+DR+ CG +APPEGLY Sbjct: 180 GENIEIHVAARSFLHSQVRSMVGSLAHVGSGKWRVEDMAEALAAKDRRRCGVVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LMQVDY 245 >gi|163867374|ref|YP_001608568.1| tRNA pseudouridine synthase A [Bartonella tribocorum CIP 105476] gi|189029992|sp|A9ILJ7|TRUA_BART1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|161017015|emb|CAK00573.1| tRNA pseudouridine synthase A [Bartonella tribocorum CIP 105476] Length = 247 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 136/247 (55%), Positives = 171/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W P + ALNA L+ S+ ISILN+ V F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFIKNWPPHTVRDALNALLRQQSEAISILNVENVPDDFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ D+ Sbjct: 121 RSPPALNAKRVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDIQK 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFIYAKARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|17988610|ref|NP_541243.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|62317861|ref|YP_223714.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. 9-941] gi|83269839|ref|YP_419130.1| tRNA pseudouridine synthase A [Brucella melitensis biovar Abortus 2308] gi|148558621|ref|YP_001257944.1| tRNA pseudouridine synthase A [Brucella ovis ATCC 25840] gi|161621080|ref|YP_001594966.1| tRNA pseudouridine synthase A [Brucella canis ATCC 23365] gi|163845146|ref|YP_001622801.1| tRNA pseudouridine synthase A [Brucella suis ATCC 23445] gi|221090245|ref|YP_002519393.1| tRNA pseudouridine synthase A [Brucella suis 1330] gi|225629482|ref|ZP_03787515.1| tRNA pseudouridine synthase A [Brucella ceti str. Cudo] gi|225686787|ref|YP_002734759.1| tRNA pseudouridine synthase A [Brucella melitensis ATCC 23457] gi|237817402|ref|ZP_04596394.1| tRNA pseudouridine synthase A [Brucella abortus str. 2308 A] gi|254690653|ref|ZP_05153907.1| tRNA pseudouridine synthase A [Brucella abortus bv. 6 str. 870] gi|254696042|ref|ZP_05157870.1| tRNA pseudouridine synthase A [Brucella abortus bv. 3 str. Tulya] gi|254699151|ref|ZP_05160979.1| tRNA pseudouridine synthase A [Brucella abortus bv. 2 str. 86/8/59] gi|254700227|ref|ZP_05162055.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|254703348|ref|ZP_05165176.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|254705511|ref|ZP_05167339.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|254710742|ref|ZP_05172553.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|254712788|ref|ZP_05174599.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|254715857|ref|ZP_05177668.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|254732595|ref|ZP_05191173.1| tRNA pseudouridine synthase A [Brucella abortus bv. 4 str. 292] gi|256015792|ref|YP_003105801.1| tRNA pseudouridine synthase A [Brucella microti CCM 4915] gi|256029125|ref|ZP_05442739.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|256043901|ref|ZP_05446820.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|256058808|ref|ZP_05449024.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|256111035|ref|ZP_05452097.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|256157317|ref|ZP_05455235.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|256253705|ref|ZP_05459241.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|256255835|ref|ZP_05461371.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|256262079|ref|ZP_05464611.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 2 str. 63/9] gi|260167783|ref|ZP_05754594.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|260545096|ref|ZP_05820917.1| tRNA pseudouridine synthase A [Brucella abortus NCTC 8038] gi|260565077|ref|ZP_05835562.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|260567722|ref|ZP_05838191.1| tRNA pseudouridine synthase A [Brucella suis bv. 4 str. 40] gi|260756224|ref|ZP_05868572.1| pseudouridylate synthase [Brucella abortus bv. 6 str. 870] gi|260760407|ref|ZP_05872755.1| pseudouridylate synthase [Brucella abortus bv. 4 str. 292] gi|260763647|ref|ZP_05875979.1| pseudouridylate synthase [Brucella abortus bv. 2 str. 86/8/59] gi|260882048|ref|ZP_05893662.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|261216474|ref|ZP_05930755.1| pseudouridylate synthase [Brucella abortus bv. 3 str. Tulya] gi|261217618|ref|ZP_05931899.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|261220842|ref|ZP_05935123.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|261312915|ref|ZP_05952112.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|261318310|ref|ZP_05957507.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|261320495|ref|ZP_05959692.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|261322745|ref|ZP_05961942.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|261750722|ref|ZP_05994431.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|261753978|ref|ZP_05997687.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|261757220|ref|ZP_06000929.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|265986108|ref|ZP_06098665.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|265990323|ref|ZP_06102880.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|265992570|ref|ZP_06105127.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|265995802|ref|ZP_06108359.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|294853986|ref|ZP_06794658.1| tRNA pseudouridine synthase A [Brucella sp. NVSL 07-0026] gi|297249204|ref|ZP_06932905.1| tRNA pseudouridine synthase A [Brucella abortus bv. 5 str. B3196] gi|30913400|sp|Q8YDB2|TRUA_BRUME RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901254|sp|Q60CV4|TRUA_BRUSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81309258|sp|Q576T1|TRUA_BRUAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123754475|sp|Q2YJQ4|TRUA_BRUA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228682|sp|A5VVT9|TRUA_BRUO2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030128|sp|A9MCV8|TRUA_BRUC2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030129|sp|A9WW43|TRUA_BRUSI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789607|sp|C0RMH2|TRUA_BRUMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17984412|gb|AAL53507.1| tRNA pseudouridine synthase a [Brucella melitensis bv. 1 str. 16M] gi|54112373|gb|AAV28867.1| tRNA pseudouridine synthase A [Brucella suis 1330] gi|62198054|gb|AAX76353.1| TruA, tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. 9-941] gi|82940113|emb|CAJ13161.1| tRNA pseudouridine synthase [Brucella melitensis biovar Abortus 2308] gi|148369906|gb|ABQ62778.1| tRNA pseudouridine synthase A [Brucella ovis ATCC 25840] gi|161337891|gb|ABX64195.1| tRNA pseudouridine synthase A [Brucella canis ATCC 23365] gi|163675869|gb|ABY39979.1| tRNA pseudouridine synthase A [Brucella suis ATCC 23445] gi|225615978|gb|EEH13027.1| tRNA pseudouridine synthase A [Brucella ceti str. Cudo] gi|225642892|gb|ACO02805.1| tRNA pseudouridine synthase A [Brucella melitensis ATCC 23457] gi|237788215|gb|EEP62431.1| tRNA pseudouridine synthase A [Brucella abortus str. 2308 A] gi|255998452|gb|ACU50139.1| tRNA pseudouridine synthase A [Brucella microti CCM 4915] gi|260098367|gb|EEW82241.1| tRNA pseudouridine synthase A [Brucella abortus NCTC 8038] gi|260152720|gb|EEW87813.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|260154387|gb|EEW89468.1| tRNA pseudouridine synthase A [Brucella suis bv. 4 str. 40] gi|260670725|gb|EEX57665.1| pseudouridylate synthase [Brucella abortus bv. 4 str. 292] gi|260674068|gb|EEX60889.1| pseudouridylate synthase [Brucella abortus bv. 2 str. 86/8/59] gi|260676332|gb|EEX63153.1| pseudouridylate synthase [Brucella abortus bv. 6 str. 870] gi|260871576|gb|EEX78645.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|260918081|gb|EEX84942.1| pseudouridylate synthase [Brucella abortus bv. 3 str. Tulya] gi|260919426|gb|EEX86079.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|260922707|gb|EEX89275.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|261293185|gb|EEX96681.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|261297533|gb|EEY01030.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|261298725|gb|EEY02222.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|261301941|gb|EEY05438.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|261737204|gb|EEY25200.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|261740475|gb|EEY28401.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|261743731|gb|EEY31657.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|262550099|gb|EEZ06260.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|262763440|gb|EEZ09472.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|263000992|gb|EEZ13682.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|263091768|gb|EEZ16099.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 2 str. 63/9] gi|264658305|gb|EEZ28566.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|294819641|gb|EFG36641.1| tRNA pseudouridine synthase A [Brucella sp. NVSL 07-0026] gi|297173073|gb|EFH32437.1| tRNA pseudouridine synthase A [Brucella abortus bv. 5 str. B3196] gi|326411195|gb|ADZ68259.1| tRNA pseudouridine synthase A [Brucella melitensis M28] gi|326554486|gb|ADZ89125.1| tRNA pseudouridine synthase A [Brucella melitensis M5-90] Length = 251 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 132/248 (53%), Positives = 175/248 (70%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++QG+IE+A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL ++W + A+NA+L ++D ISILN+ F ARFSA R YLYRI R Sbjct: 61 VAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGL 240 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 241 YLVGVDYA 248 >gi|110632752|ref|YP_672960.1| tRNA pseudouridine synthase A [Mesorhizobium sp. BNC1] gi|123162871|sp|Q11LD0|TRUA_MESSB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110283736|gb|ABG61795.1| tRNA pseudouridine synthase A [Chelativorans sp. BNC1] Length = 247 Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 140/247 (56%), Positives = 175/247 (70%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G Y GWQRQ S+Q +IEKAI +GE V + GAGRTD+GVHAL Q Sbjct: 1 MHRFRIDIEYDGGPYAGWQRQAGQHSVQEAIEKAIAAFSGEEVTIRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFDL REW + ALNA+L ++ + +SIL V + F ARFSA R YLYRI R Sbjct: 61 VAHFDLSREWKSDKVRDALNAHLTLAGEAVSILRAEAVAEDFDARFSAKARHYLYRIANR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE+GRAW + + LD M AAQ LVG+HDFTTFRS+ CQA SP++T+D DV Sbjct: 121 RSPLALERGRAWHVARRLDAAAMHEAAQRLVGKHDFTTFRSVQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ IEI ARSFLH Q+RS VG+LK VG+G WT+ D + ALQA+DR CGP+APP+GL Sbjct: 181 VGDEIEIHASARSFLHNQVRSLVGTLKKVGEGGWTADDAQAALQARDRAACGPVAPPQGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLVRVDY 247 >gi|254720140|ref|ZP_05181951.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] gi|265985146|ref|ZP_06097881.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] gi|264663738|gb|EEZ33999.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] Length = 251 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/248 (53%), Positives = 174/248 (70%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++QG+IE+A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEELTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL ++W + A+NA+L ++D ISILN+ F ARFSA R YLYRI R Sbjct: 61 VAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGL 240 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 241 YLVGVDYA 248 >gi|56551706|ref|YP_162545.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ZM4] gi|241762299|ref|ZP_04760380.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752717|ref|YP_003225610.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59803041|sp|Q9REQ0|TRUA_ZYMMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56543280|gb|AAV89434.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ZM4] gi|241373202|gb|EER62832.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552080|gb|ACV75026.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 245 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 133/246 (54%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +E++G + GWQRQK+G++IQGSIE+A + G+ V AGRTD+GVH L Sbjct: 1 MNRYRLTVEFDGRNFMGWQRQKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ R++ P L +ALNA LK I+IL+ VD ++HARFS I R YLYRII R+ Sbjct: 61 TAHIDVARDFTPFRLMEALNARLK-PRPIAILSCEQVDPEWHARFSCIGRRYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL LE GRAW + K LD E M IAA+ L+G HDFTTFRS+HCQ+ SP++T+DH DV Sbjct: 120 PPLTLEAGRAWHVIKPLDAETMDIAAKRLIGLHDFTTFRSVHCQSKSPVKTLDHLDVRRI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS VG L LVG G+WT+ D+ AL+A++R G APP+GLY Sbjct: 180 GDQIEITAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTQAIY 245 >gi|240849747|ref|YP_002971135.1| tRNA pseudouridine synthase A [Bartonella grahamii as4aup] gi|240266870|gb|ACS50458.1| tRNA pseudouridine synthase A [Bartonella grahamii as4aup] Length = 247 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/247 (53%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ ++QG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAKLHTVQGALEQAIFSFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W P + ALNA L K + ISILN+ V F ARFSA++R Y+++I+ R Sbjct: 61 VAHVDFIKNWHPHTVRDALNALLRKQGEAISILNVQNVPDDFDARFSAVKRHYIFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK L+ E M AAQ LVG HDFTTFRS HCQA SPIRT+D D+ Sbjct: 121 RSPPALNAKRVWWLPKPLNAEAMHEAAQKLVGEHDFTTFRSAHCQAKSPIRTLDRLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKHCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|319780351|ref|YP_004139827.1| tRNA pseudouridine synthase A [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166239|gb|ADV09777.1| tRNA pseudouridine synthase A [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 256 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 132/247 (53%), Positives = 176/247 (71%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE + + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAIRLRAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DLV+ W + A+NA+L+ + I+IL ++V F ARFSAI R YLYRI+ R Sbjct: 61 VAHVDLVKAWPSDKVRDAVNAHLQAAGARIAILKATVVSDSFDARFSAIGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP AL+KG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SPIRT++ DV+ Sbjct: 121 RAPAALDKGKVWWVPKRLDAGAMHEAAKVLLGRHDFTTFRSTQCQANSPIRTLERLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG W++ DL+ AL+A+DR CG +APP+GL Sbjct: 181 QGDMIEVRASARSFLHNQVRSMVGSLKRVGDGGWSAADLKTALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEY 246 + V+Y Sbjct: 241 FLTGVDY 247 >gi|6685124|gb|AAF23795.1|AF213822_10 tRNA-pseudouridine synthase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 245 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 132/246 (53%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +E++G + GWQR+K+G++IQGSIE+A + G+ V AGRTD+GVH L Sbjct: 1 MNRYRLTVEFDGRNFMGWQRKKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ R++ P L +ALNA LK I+IL+ VD ++HARFS I R YLYRII R+ Sbjct: 61 TAHIDVARDFTPFRLMEALNARLK-PRPIAILSCEQVDPEWHARFSCIGRRYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL LE GRAW + K LD E M IAA+ L+G HDFTTFRS+HCQ+ SP++T+DH DV Sbjct: 120 PPLTLEAGRAWHVIKPLDAETMDIAAKRLIGLHDFTTFRSVHCQSKSPVKTLDHLDVRRI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS VG L LVG G+WT+ D+ AL+A++R G APP+GLY Sbjct: 180 GDQIEITAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTQAIY 245 >gi|154250719|ref|YP_001411543.1| tRNA pseudouridine synthase A [Parvibaculum lavamentivorans DS-1] gi|171769555|sp|A7HPQ3|TRUA_PARL1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154154669|gb|ABS61886.1| tRNA pseudouridine synthase A [Parvibaculum lavamentivorans DS-1] Length = 246 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/247 (52%), Positives = 172/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+GS + GWQ Q NG S+Q +E+ I G+ + + GAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGSPFVGWQAQTNGRSVQQVLEEGIKGFCGQELKIFGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D P L A+NA+++ ++I+ V F ARFSA++R Y+YRI+ R+ Sbjct: 61 VAHVDFETPVAPDTLRDAVNAHMR-PHPVAIVEAEEVPDSFEARFSAVKRHYMYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L++G+AWL+ K+LD + M AAQ LVG HDFTTFRS+ CQA SP++T+D V+ + Sbjct: 120 APLTLDRGQAWLVHKTLDADAMHDAAQALVGNHDFTTFRSVQCQAKSPVKTVDEISVSRY 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + IEI ARSFLH Q+RSFVG+LK+VGDG WT +EKAL A+DR CGP+APP+GLY Sbjct: 180 ADEIEIVCRARSFLHNQVRSFVGTLKMVGDGSWTRRKVEKALAAKDRAACGPVAPPDGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LLQVDYE 246 >gi|323135724|ref|ZP_08070807.1| tRNA pseudouridine synthase A [Methylocystis sp. ATCC 49242] gi|322398815|gb|EFY01334.1| tRNA pseudouridine synthase A [Methylocystis sp. ATCC 49242] Length = 245 Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 136/246 (55%), Positives = 172/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+Q +E+A+ + G V+HGAGRTD+GVHAL Q Sbjct: 1 MPRYALTIEYDGGPFVGWQRQANGVSVQQRLEEAVAAINGARAVIHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW L ALNA+LK D +++++ VD+ F ARFSAIRR Y Y I R+ Sbjct: 61 VAHVDLAREWRADRLRDALNAHLK-PDPVAVVSARAVDENFEARFSAIRRHYRYVIDNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + GRAW + + LD + M AAQ LVGRHDFTTFR+ CQA+SP+RT++ DV Sbjct: 120 APLTVGLGRAWHVKRPLDAQAMHDAAQRLVGRHDFTTFRASECQANSPVRTLERLDVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS GSL+ VG GKWT+ DL AL+A+DR CG +APP GLY Sbjct: 180 GDRIEIVTCARSFLHNQVRSMAGSLEHVGSGKWTADDLAAALEAKDRARCGQVAPPHGLY 239 Query: 241 FDSVEY 246 +V+Y Sbjct: 240 LVAVDY 245 >gi|260461124|ref|ZP_05809373.1| tRNA pseudouridine synthase A [Mesorhizobium opportunistum WSM2075] gi|259033158|gb|EEW34420.1| tRNA pseudouridine synthase A [Mesorhizobium opportunistum WSM2075] Length = 249 Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 131/248 (52%), Positives = 173/248 (69%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE V + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEEAIEKFCGEAVRLRAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DLV+ W + A+NA+L+ + + IL +V F ARFSA R YLYRI+ R Sbjct: 61 VAHVDLVKAWPGDKVRDAVNAHLQAAGARVVILKAGVVPDDFDARFSATGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP ALEKG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SP+RT++ DV+ Sbjct: 121 RAPSALEKGKVWWVPKRLDAGAMHEAAKILLGRHDFTTFRSTQCQANSPVRTLEQLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG W++ D + AL+A+DR CG +APP+GL Sbjct: 181 QGDMIEVRASARSFLHNQVRSMVGSLKRVGDGSWSANDFKAALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEYS 247 + V+YS Sbjct: 241 FLIGVDYS 248 >gi|13474062|ref|NP_105630.1| tRNA pseudouridine synthase A [Mesorhizobium loti MAFF303099] gi|30913408|sp|Q98D55|TRUA_RHILO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14024814|dbj|BAB51416.1| tRNA-pseudouridine synthase [Mesorhizobium loti MAFF303099] Length = 248 Score = 270 bits (691), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 131/247 (53%), Positives = 173/247 (70%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE V + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAVRLRAAGRTDAGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL + W + A+NA+L+ + ++IL +IV F ARFSA R YLYRI+ R Sbjct: 61 VAHVDLAKPWPGDKVRDAVNAHLQAAGAHVAILKAAIVPDDFDARFSATGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP ALEKG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SP+RT++ DV+ Sbjct: 121 RAPAALEKGKVWWVPKRLDAGAMHEAAKLLLGRHDFTTFRSTQCQANSPVRTLERLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG WT +L+ AL+A+DR CG +APP+GL Sbjct: 181 AGDMIEVRASARSFLHNQVRSMVGSLKRVGDGGWTEAELKAALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEY 246 + V+Y Sbjct: 241 FLIGVDY 247 >gi|299132601|ref|ZP_07025796.1| tRNA pseudouridine synthase A [Afipia sp. 1NLS2] gi|298592738|gb|EFI52938.1| tRNA pseudouridine synthase A [Afipia sp. 1NLS2] Length = 245 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 130/246 (52%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ + GWQ Q NG S+QG++E A+ +TG V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGTPFCGWQYQDNGPSVQGALEDAVMAMTGSRVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+++ I +L+ IV F ARFSA++R Y+YRI R+ Sbjct: 61 VAHIDLEKTYRADRVRDALNAHVR-PHPIGVLSAEIVPDTFEARFSALKRHYIYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ GRAW + + LD M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDAGRAWRVARPLDVAAMNEAAQVLIGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+WT+ D+ KAL A++R CGP+APP+GLY Sbjct: 180 GDTVNIVTSARSFLHSQVRSMVGSLVWVGHGRWTAADMRKALDARNRAACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|319407940|emb|CBI81594.1| tRNA pseudouridine synthase A [Bartonella schoenbuchensis R1] Length = 247 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 129/247 (52%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ + +EY+GS Y GWQRQ +IQG+IE+AIF +GE + + AGRTD+GVHA+ Q Sbjct: 1 MVRFKLTLEYDGSNYAGWQRQAGLRTIQGAIEQAIFNFSGEKLTIVTAGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + I++LN+ V FHARF A +R YL++I+ R Sbjct: 61 VAHVDFTKNWHANTVHNALNAHLQQQGENIAVLNVQNVPDSFHARFCATKRYYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RSPPALNVKRVWWLPKHLNADAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDVYR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DR CG +APP GL Sbjct: 181 KGEEIFLYAQARSFLHHQIRSFAGSLVKVGTGQWTAQDLEAALNAKDRARCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y ++Y Sbjct: 241 YLMKIDY 247 >gi|319403559|emb|CBI77141.1| tRNA pseudouridine synthase A [Bartonella rochalimae ATCC BAA-1498] Length = 247 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 129/247 (52%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ + +EY+GS Y GWQRQKN +IQGSIE AIF +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MVRFKLTLEYDGSNYAGWQRQKNLRTIQGSIENAIFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L K + I++LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTNTVRDALNAHLQKQGEDIAVLNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS +CQA SP+RT++ D+ Sbjct: 121 RSPPALNTKRVWWLPKPLDADAMHKAAQKLVGQHDFTTFRSAYCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGDEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHARNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLMKVDY 247 >gi|90419798|ref|ZP_01227707.1| tRNA pseudouridine synthase A [Aurantimonas manganoxydans SI85-9A1] gi|90335839|gb|EAS49587.1| tRNA pseudouridine synthase A [Aurantimonas manganoxydans SI85-9A1] Length = 259 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 136/247 (55%), Positives = 167/247 (67%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G+ Y GWQRQK S Q IE A+ TGE + AGRTD+GVHA Q Sbjct: 1 MPRFKLTIEYDGTPYCGWQRQKTDLSAQEVIETAVEGFTGEAATLFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P + ALNA+L+ + ++IL+ V F ARFSA +R YLYRI R+ Sbjct: 61 VAHVDLRRDWEPDTVRDALNAHLRDA-PVAILSAERVADDFDARFSARKRFYLYRIFNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNS 179 AP AL GR W + K LD + M AAQ LVG HDF TFRS HCQA +PIRT++ D V Sbjct: 120 APTALLIGRVWWVSKPLDVDAMHAAAQRLVGTHDFDTFRSAHCQAKNPIRTLEQLDVVRG 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +A+SFLH QIRSF GSLKLVG+G W++ DL AL+A+DRK CGP+APP+GL Sbjct: 180 PGEEIHIHAMAQSFLHNQIRSFAGSLKLVGEGHWSAADLVAALEARDRKRCGPVAPPDGL 239 Query: 240 YFDSVEY 246 Y VEY Sbjct: 240 YLTRVEY 246 >gi|319404987|emb|CBI78590.1| tRNA pseudouridine synthase A [Bartonella sp. AR 15-3] Length = 247 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 130/247 (52%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQK+ +IQGSIEKA+F +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQKSLRTIQGSIEKAVFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W I+ ALNA+L K + I +LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKHWNTHIVRDALNAHLQKQGEDIVVLNVQSVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS HCQA SP+RT++ D+ Sbjct: 121 RSPPALNAKRVWWLPKPLDADAMHKAAQRLVGQHDFTTFRSAHCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGEEIVLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHAKNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLIKVDY 247 >gi|153008677|ref|YP_001369892.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi ATCC 49188] gi|166228741|sp|A6WYK9|TRUA_OCHA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151560565|gb|ABS14063.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi ATCC 49188] Length = 251 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 129/248 (52%), Positives = 171/248 (68%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++Q +IE A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQNAIELAFKKFCGEDLTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W + A+NA+L ++D +SILN+ F ARFSA R YLYRI R Sbjct: 61 VVHVDLTKDWGAGKVRDAVNAHLVMADERVSILNVERTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA++ RAW + K LD E M AA+ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVDYQRAWWVQKRLDAEAMHEAAKRLLGEHDFTTFRATQCQAKSPVKTLDRLDVIR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDYVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAKDRKACGQVAPPYGL 240 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 241 YLIGVDYA 248 >gi|49473750|ref|YP_031792.1| tRNA pseudouridine synthase A [Bartonella quintana str. Toulouse] gi|51316599|sp|Q6G1G9|TRUA_BARQU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49239253|emb|CAF25574.1| tRNA pseudouridine synthase A [Bartonella quintana str. Toulouse] Length = 247 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 132/247 (53%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQ ++E+AIF +G+ + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAELHTIQSALEQAIFHFSGQQLTTTTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W + ALNAYL K + I++LN+ V F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFIKNWQTYTVRDALNAYLQKQGEEIAVLNVQNVPDNFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 LSPPALNIKRVWWIPKPLNVDAMHQAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDVYR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLTQVDY 247 >gi|296446982|ref|ZP_06888917.1| tRNA pseudouridine synthase A [Methylosinus trichosporium OB3b] gi|296255549|gb|EFH02641.1| tRNA pseudouridine synthase A [Methylosinus trichosporium OB3b] Length = 246 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 136/247 (55%), Positives = 173/247 (70%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R+ +IIEY+G + GWQRQ+NG SIQ +E+A+ L +G VVHGAGRTD+GVHAL Sbjct: 1 MPRFALIIEYDGGPFVGWQRQENGVSIQQRLEEAVAALESGARRVVHGAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL R+W L A+NA+L+ D I++L V + F ARFSA+RR Y Y I R Sbjct: 61 QVAHVDLTRDWRADRLRDAINAHLR-PDPIAVLEARGVAEGFEARFSAVRRHYRYIIDNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APL L++GR W + + LD M AAQ LVGRHDFTTFRS CQA SPIRT++ DV Sbjct: 120 RAPLTLQRGRMWHVKRPLDAAAMHAAAQLLVGRHDFTTFRSTECQAESPIRTLERLDVRR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEI ARSFLH Q+RS GSL+ VG G+W++ DL AL+A++R CG +APP GL Sbjct: 180 EGSLIEITTSARSFLHNQVRSLAGSLEHVGSGRWSAADLRAALEARERARCGQVAPPHGL 239 Query: 240 YFDSVEY 246 Y +V+Y Sbjct: 240 YLVAVDY 246 >gi|319406472|emb|CBI80113.1| tRNA pseudouridine synthase A [Bartonella sp. 1-1C] Length = 247 Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 129/247 (52%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQKN +IQGSIE AIF +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQKNLRTIQGSIENAIFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L K + I++LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTNTVRDALNAHLQKQGENIAVLNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS +CQA SP+RT++ D+ Sbjct: 121 RSPPALNTKRVWWLPKPLDADAMHKAAQKLVGQHDFTTFRSAYCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGDEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHARNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLMKVDY 247 >gi|288959244|ref|YP_003449585.1| tRNA pseudouridine synthase A [Azospirillum sp. B510] gi|288911552|dbj|BAI73041.1| tRNA pseudouridine synthase A [Azospirillum sp. B510] Length = 245 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 123/246 (50%), Positives = 175/246 (71%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQ NG S+Q S+E+A+ ++GE+ VHG+GRTD+GVHAL Q Sbjct: 1 MQRWKLTVEYDGRPFVGWQRQDNGPSVQQSLEEAVRRLSGEVARVHGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL + + + L ALN +LK + I++L + V + FHAR ++ R+Y+YRI+ R+ Sbjct: 61 VCHFDLEKPFTALKLRDALNFHLKPA-PIAVLEVEAVTEDFHARLTSTGRAYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALE GRAW + + LD + M AAQ LVG+HDF++FR+ CQA SP++T+D V Sbjct: 120 APLALESGRAWHVTRPLDADAMHAAAQVLVGQHDFSSFRAALCQAKSPVKTLDRLAVERQ 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R+ VG+L+LVG GKWT+ D+ +AL+A DR + GP PP+GLY Sbjct: 180 GDEIRVHAAARSFLHHQVRNMVGTLELVGAGKWTADDVRRALEACDRAKAGPTCPPDGLY 239 Query: 241 FDSVEY 246 F + Y Sbjct: 240 FLAARY 245 >gi|49474896|ref|YP_032937.1| tRNA pseudouridine synthase A [Bartonella henselae str. Houston-1] gi|51316603|sp|Q6G547|TRUA_BARHE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49237701|emb|CAF26890.1| tRNA pseudouridine synthase A [Bartonella henselae str. Houston-1] Length = 247 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 131/247 (53%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQ ++E+A+F +G+ + + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAELRTIQSALEQALFHFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L K D I+IL++ V F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFEKNWRTHTVRDALNAHLQKQGDNIAILHVQNVPDSFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RSPPALNTKRVWWIPKPLNAQAMHEAAQKLVGKHDFTTFRSAHCQAKSPIRTLERLDVQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DR CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|75677245|ref|YP_319666.1| tRNA pseudouridine synthase A [Nitrobacter winogradskyi Nb-255] gi|123759229|sp|Q3SN27|TRUA_NITWN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|74422115|gb|ABA06314.1| tRNA pseudouridine synthase [Nitrobacter winogradskyi Nb-255] Length = 255 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/247 (52%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQTNGPSVQGALEAAVKAICGDDVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R ++P L LNA+L+ I +L IV F ARFSA RR Y+YRI R+ Sbjct: 61 VAHCDIARHFMPDRLRDGLNAHLR-PHPIGVLEAEIVPDSFEARFSARRRHYIYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ GR W +P+ LD E M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGRVWRVPRPLDTEAMHAAAQRLLGKHDFTTFRDTECQAKSPEKTLDQLDVIRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W + DL AL A+ R+ CGP+APP+GLY Sbjct: 180 GDNVSIITSARSYLHSQVRSMVGSLVWVGHGRWNADDLSGALAARRREACGPVAPPDGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LARVDYE 246 >gi|85713817|ref|ZP_01044807.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A] gi|85699721|gb|EAQ37588.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A] Length = 245 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 128/246 (52%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYRLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDCVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + P L LNA+L+ I +L IV F ARFSA RR Y+YRI R+ Sbjct: 61 VAHCDIAKHFAPDRLRDGLNAHLR-PHPIGVLEAEIVPDSFEARFSARRRHYIYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ GR W +P+ LD E M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGRVWRVPRPLDTEAMHDAAQRLLGKHDFTTFRDTECQAKSPEKTLDQLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I +ARS+LH+Q+RS VGSL VG G+W++ DL AL A+ R+ CGP+APP+GLY Sbjct: 180 GDNVSIITLARSYLHSQVRSMVGSLVWVGHGRWSADDLSSALAARRREACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|319898267|ref|YP_004158360.1| tRNA pseudouridine synthase A [Bartonella clarridgeiae 73] gi|319402231|emb|CBI75764.1| tRNA pseudouridine synthase A [Bartonella clarridgeiae 73] Length = 247 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 131/247 (53%), Positives = 166/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ N +IQGSIE+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQANLRTIQGSIEQAIFHFSGQKLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L K + ISILN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTHTVRDALNAHLQKQGEDISILNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P L R W +PK LD + M AAQ LVG+HDFTTFRS HCQA SPIRT++ D+ Sbjct: 121 RSPPVLNAKRVWWLPKPLDADAMHKAAQRLVGQHDFTTFRSAHCQAKSPIRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 KGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHAKNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLIKVDY 247 >gi|121602227|ref|YP_989569.1| tRNA pseudouridine synthase A [Bartonella bacilliformis KC583] gi|166228679|sp|A1UUB6|TRUA_BARBK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120614404|gb|ABM45005.1| tRNA pseudouridine synthase A [Bartonella bacilliformis KC583] Length = 247 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 127/247 (51%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ ++QG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQAELRTVQGAVEQAIFHFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++W + ALNA+L+ D I+ILN+ + F AR SA++R YL++I+ R Sbjct: 61 VAHVDFEKDWHVNTIHNALNAHLRQQGDNIAILNVENIPDSFDARLSAVKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP AL R W +P+ L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RAPPALNAKRVWWLPRPLNADAMHKAAQKLVGKHDFTTFRSAHCQAKSPIRTLECLDVQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE+AL A+DR CG +APP GL Sbjct: 181 EGEEIFLYARARSFLHHQIRSFAGSLMEVGIGRWTAQDLEEALHAKDRARCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLTQVDY 247 >gi|209886648|ref|YP_002290505.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5] gi|229557998|sp|B6JJP6|TRUA_OLICO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209874844|gb|ACI94640.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5] Length = 245 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 131/246 (53%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQ Q NG S+QG++E A+ + G V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLLIEYDGTPFCGWQYQDNGPSVQGALEDAVAALAGTHVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+L+ I +L+ IV + F +RFSA++R Y+YRI R+ Sbjct: 61 VAHIDLEKSYRTDQVRDALNAHLR-PHPIGVLSAEIVPETFESRFSAVKRHYIYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ RAW I ++LD M AAQ LVGRHDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDLHRAWRIARTLDVAAMHEAAQVLVGRHDFTTFRDTECQAKSPEKTLDQLDVTRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+WT D+ AL A+DR CGP+APPEGLY Sbjct: 180 GDAVSIVTSARSFLHSQVRSMVGSLVWVGHGRWTIADMRNALAARDRTACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|114568998|ref|YP_755678.1| tRNA pseudouridine synthase A [Maricaulis maris MCS10] gi|122316778|sp|Q0ASJ7|TRUA_MARMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114339460|gb|ABI64740.1| tRNA pseudouridine synthase A [Maricaulis maris MCS10] Length = 249 Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 170/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ N S+Q S+E+A + G V+V+GAGRTDSGVHAL Q Sbjct: 1 MPRYRITIEYDGRPFSGWQRQDNAPSVQESLERAAEKLDGAPVLVYGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++ + A+N +LK D ++++ + V FHARFSA RR YLYR+I R+ Sbjct: 61 VAHLDLAKDLSTDKVRDAINYHLK-PDPVAVIEAARVSDDFHARFSATRRHYLYRMIDRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L++G+ W + + LD E M AAQ L+G+HDFTTFR CQA SP++++D V+ + Sbjct: 120 APLTLDRGQVWRVTRKLDAEAMHHAAQALLGQHDFTTFRDAQCQAESPVKSLDAISVSRY 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +++ ARSFLH Q+RS VGSL VG GKW++ D ++AL A DR CGP+AP +GLY Sbjct: 180 GEEVQLTCSARSFLHRQVRSMVGSLVEVGVGKWSARDFKRALDAADRSRCGPVAPADGLY 239 Query: 241 FDSVEY 246 +V+Y Sbjct: 240 LTAVDY 245 >gi|83594681|ref|YP_428433.1| pseudouridylate synthase [Rhodospirillum rubrum ATCC 11170] gi|123725839|sp|Q2RNZ9|TRUA_RHORT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83577595|gb|ABC24146.1| Pseudouridylate synthase [Rhodospirillum rubrum ATCC 11170] Length = 278 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY + +EY+G GY GWQRQ NG +IQ S+E+A F + G VHG+GRTDSGVHAL Q Sbjct: 1 MVRYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R + + KALNA+L+ I++++ + V + FHARFSA RSY YRI+ R Sbjct: 61 VAHLDLPRAYGAATVMKALNAHLR-PQPIAVIDAAEVAEDFHARFSAEERSYRYRILNRI 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP L++GR W + + ++ M AAQ LVGRHDF++FR+ CQA SP++T+ V Sbjct: 120 APPTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVKTLSELRVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R+ VG+L LVGDG+WT+ L AL+A DR GP APP+GLY Sbjct: 180 GDEIHVFARARSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLY 239 Query: 241 FDSVEY 246 F V + Sbjct: 240 FLRVRF 245 >gi|92119152|ref|YP_578881.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14] gi|123264920|sp|Q1QH76|TRUA_NITHX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91802046|gb|ABE64421.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14] Length = 245 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDAVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + P L LNA+L+ I +L IV F ARFSA+RR Y+YRI R+ Sbjct: 61 VAHCDIAKHFAPNRLRDGLNAHLR-PHPIGVLTAEIVPDTFEARFSALRRHYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ G W +P+ LD M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGHVWRVPRPLDTLAMHAAAQRLIGKHDFTTFRDTECQAKSPEKTLDQLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+W++ DL AL + R+ CGP+APP+GLY Sbjct: 180 GDTVTIVTSARSFLHSQVRSMVGSLVWVGHGRWSADDLSNALAERRREACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|85707833|ref|ZP_01038899.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1] gi|85689367|gb|EAQ29370.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1] Length = 247 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 127/246 (51%), Positives = 167/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IE++G+ + G QRQK+G S+Q SIE+A+ +TGE +H AGRTD+GVHAL Sbjct: 1 MTRFALTIEFDGTPFQGLQRQKHGPSVQQSIEEALHRITGEDATLHSAGRTDTGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +H DL ++ P L +ALNA+L+ D I+IL +VD+ +HARFS + R Y+Y+I R+ Sbjct: 61 RSHVDLEKDIDPFRLSEALNAHLR-PDPIAILACEVVDEDWHARFSCVGRRYVYKIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L K RAW + LD E M AAQ LVGRHDFTTFRS+HCQA P++T+D +V Sbjct: 120 APLTLAKNRAWQVAHDLDHEAMHRAAQALVGRHDFTTFRSVHCQAKDPVKTLDQLNVERV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VG LKLVG G W + +AL A+DR + G APP+GLY Sbjct: 180 GDEIHIHAAARSFLHHQVRSMVGCLKLVGAGSWREEQVAEALAAKDRSKLGLNAPPQGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVEATY 245 >gi|298293826|ref|YP_003695765.1| tRNA pseudouridine synthase A [Starkeya novella DSM 506] gi|296930337|gb|ADH91146.1| tRNA pseudouridine synthase A [Starkeya novella DSM 506] Length = 250 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 129/251 (51%), Positives = 169/251 (67%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q G+S+QG++ +A+ +TGE V VHGAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFVGWQIQAEGTSVQGALAQAVTRLTGEQVAVHGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH +L R+W P + ALNA+L+ I++L+ FHARFSA R Y+YRII R+ Sbjct: 61 VAHVELSRDWRPDTVRDALNAHLR-PHPIAVLSAERAADDFHARFSATGRRYVYRIIARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LALE+ RAW + + LD M A LVGRHDFTTFR++ CQA+SP++T+D +V Sbjct: 120 PDLALERNRAWRVLRPLDVAGMAEGAARLVGRHDFTTFRAVGCQAASPLKTLDRLEVEEV 179 Query: 181 ---GNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G +EIRV ARSFLH Q+RS VG+L VG+G WT D+ AL+A+DR CGP+AP Sbjct: 180 ALEGPGMEIRVHAAARSFLHHQVRSMVGTLVKVGEGAWTPDDVTAALEAKDRTRCGPMAP 239 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 240 SAGLYLAEVTY 250 >gi|84683526|ref|ZP_01011429.1| tRNA pseudouridine synthase A [Maritimibacter alkaliphilus HTCC2654] gi|84668269|gb|EAQ14736.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2654] Length = 257 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 123/250 (49%), Positives = 170/250 (68%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQK+ S+QG++E A+ + ++ + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGRPFSGWQRQKDQPSVQGAVEAALGKLEADVPSIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL ++W P L +ALN +LK D ++I+ ++VD FHARFSAI R YL+R+I+R+ Sbjct: 61 VATCDLQKDWTPFRLTEALNYHLK-PDRVAIVACALVDDGFHARFSAIERQYLFRLISRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL ++G AW + ++LD + M+ A L+GRHDFTTFRS CQA SP++T+D V + Sbjct: 120 APLVHDRGNAWRVVQALDADAMQAGADRLIGRHDFTTFRSTMCQADSPVKTLDELRVETL 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G V ARSFLH Q+RSFVG+L+ VG G W+ D+ AL+A+DR CGP+ PP Sbjct: 180 PYPGGTEYRFHVRARSFLHNQVRSFVGTLERVGAGSWSPDDVTAALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 DGLYLARVGY 249 >gi|83309340|ref|YP_419604.1| pseudouridylate synthase [Magnetospirillum magneticum AMB-1] gi|123768092|sp|Q2WAT0|TRUA_MAGSA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|82944181|dbj|BAE49045.1| Pseudouridylate synthase [Magnetospirillum magneticum AMB-1] Length = 256 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 123/247 (49%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ G S+QG +EKA+ + G +H AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGILEKAVEKLCGVPCTLHAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R++ + ALN ++K ++++ +VD+ FHARFSA+ R+YLYRI+ R+ Sbjct: 61 VAHVDLPRDYPADTVRDALNYHMK-PKPVAVVAAELVDEDFHARFSAVGRAYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLAL++ RAW +P +LD E M A+ L+G HDF+TFR+ CQA SP++T+D DV Sbjct: 120 APLALDQHRAWWVPVALDAEAMAEGARRLLGHHDFSTFRASECQAKSPMKTLDVLDVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH Q+R+ VG+LKLVG+GKW+ D+ K L+A+DR + GP AP GL Sbjct: 180 GEEIRIVAEARSFLHHQVRNMVGTLKLVGEGKWSPDDMAKVLEARDRTKGGPTAPAAGLV 239 Query: 241 FDSVEYS 247 V YS Sbjct: 240 LTGVSYS 246 >gi|296284450|ref|ZP_06862448.1| tRNA pseudouridine synthase A [Citromicrobium bathyomarinum JL354] Length = 258 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 123/244 (50%), Positives = 168/244 (68%), Gaps = 1/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +E++G+ +FG QRQK+G S+Q ++E+A VTG+ V +H AGRTD+GVHA+ + Sbjct: 5 RYALTLEFDGTPFFGLQRQKDGPSVQQAVEEAAQAVTGQQVTLHSAGRTDTGVHAIAMRS 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ + P + +A+NA+L+ + I++ + V + +HARFS I R YLYRII R+AP Sbjct: 65 HFDVESKLTPFRMGEAINAHLRPA-PIAVTHCEAVPEDWHARFSCIGRRYLYRIINRRAP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L LEK RAWL+ D E M AAQ LVG HDFTTFRS+HCQA+SP++T+D DV G+ Sbjct: 124 LTLEKNRAWLVSPECDAEAMHRAAQSLVGHHDFTTFRSVHCQAASPVKTLDRLDVERAGD 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + V ARSFLH Q+RS VG L LVG G+W + + L+A+DR+E G AP GLYF Sbjct: 184 EIRVHVAARSFLHHQVRSMVGCLALVGMGRWNEGRIAQVLEAKDRQELGLNAPSHGLYFV 243 Query: 243 SVEY 246 Y Sbjct: 244 EAVY 247 >gi|312113444|ref|YP_004011040.1| tRNA pseudouridine synthase A [Rhodomicrobium vannielii ATCC 17100] gi|311218573|gb|ADP69941.1| tRNA pseudouridine synthase A [Rhodomicrobium vannielii ATCC 17100] Length = 245 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 129/246 (52%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q NG S+Q + +AI TG + GAGRTD+GVHA Q Sbjct: 1 MPRYKITIEYDGTPFSGWQMQANGRSVQDHLARAIERFTGVRAIPRGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W P + ALN +L+ + + IL VD+ F ARFSA R YLYRI+TR+ Sbjct: 61 VAHVDLERRWPPETVRNALNFHLRPAPMV-ILACEEVDETFDARFSAKARHYLYRIVTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PLAL++ RAW I LD E M+ A+HL+G HDFTTFR+ CQA SP+RT+D V S Sbjct: 120 SPLALDRDRAWHIGVPLDAEAMQEGARHLLGHHDFTTFRASQCQAKSPLRTLDTLTVRSE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS GSLKLVG+GKW + +AL+A+DR+ CG +AP GLY Sbjct: 180 GESVFIATSARSFLHNQVRSMAGSLKLVGEGKWQPERMREALEARDRRACGSVAPACGLY 239 Query: 241 FDSVEY 246 F +V+Y Sbjct: 240 FMTVDY 245 >gi|154247231|ref|YP_001418189.1| tRNA pseudouridine synthase A [Xanthobacter autotrophicus Py2] gi|238686729|sp|A7IKI9|TRUA_XANP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154161316|gb|ABS68532.1| tRNA pseudouridine synthase A [Xanthobacter autotrophicus Py2] Length = 245 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ Y GWQ Q + ++QG++ +A GE V V GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W + A+ A L+ I++L+ V F ARFSA +R YLYRII R+ Sbjct: 61 VAHVDLSRHWRSDTVRDAMTAQLR-PHPIAVLSAEEVPDSFDARFSATKRHYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LAL++ RAW IP+ LD + M AAQ L+G+HDF+TFR+ CQA+SP++T+D DV+ Sbjct: 120 PDLALDRDRAWRIPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQAASPLKTLDQLDVSRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS VGSL VG+G+W++ DLE AL+A DR CGP+AP GLY Sbjct: 180 GDEIRVITSARSFLHHQVRSMVGSLMRVGEGRWSADDLEAALKAADRTRCGPMAPAAGLY 239 Query: 241 FDSVEY 246 +V Y Sbjct: 240 LAAVSY 245 >gi|114706822|ref|ZP_01439722.1| tRNA pseudouridine synthase A [Fulvimarina pelagi HTCC2506] gi|114537770|gb|EAU40894.1| tRNA pseudouridine synthase A [Fulvimarina pelagi HTCC2506] Length = 261 Score = 258 bits (658), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 127/248 (51%), Positives = 170/248 (68%), Gaps = 2/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ + S+Q IE+A + G V+ GAGRTDSGVHA Q Sbjct: 1 MPRYKLTVEYDGTPYAGWQRQADEPSVQAVIEEAAHRLCGTNPVLFGAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+++ + + IL+ V F ARFSA +R Y YRI R+ Sbjct: 61 VAHIDLPKAYAGGTVRDALNAHMR-DEPVVILSAEEVGADFDARFSARKRWYRYRIFNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNS 179 AP A+ +G+ W + K LD E M AAQ L G HDFTTFRS HCQA +PIRT++ + V + Sbjct: 120 APAAILRGKVWWVSKLLDTEAMHEAAQVLAGTHDFTTFRSTHCQAKNPIRTLEKLEVVRA 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +A+SFLH QIRSF G+LKLVG+G+WT+TD+ +AL+A+DR CGP+APP GL Sbjct: 180 NGEEIHIVAMAQSFLHNQIRSFAGTLKLVGEGRWTATDVSEALKAKDRTACGPVAPPYGL 239 Query: 240 YFDSVEYS 247 Y ++EY+ Sbjct: 240 YLTAIEYT 247 >gi|149185872|ref|ZP_01864187.1| tRNA pseudouridine synthase A [Erythrobacter sp. SD-21] gi|148830433|gb|EDL48869.1| tRNA pseudouridine synthase A [Erythrobacter sp. SD-21] Length = 249 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IE++G+ +FG QRQ NG S+Q S+E+A F VTGE V +H AGRTD+GVHAL Sbjct: 1 MTRFALTIEFDGTPFFGLQRQDNGPSVQQSLEEAAFRVTGENVRLHSAGRTDTGVHALAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +H D+ ++ P L +ALNA ++ D I++ + +V +HARFS RSY+YRI R+ Sbjct: 61 RSHMDIEKDIEPFRLMEALNAQVR-PDPIAVTHCGVVPDDWHARFSCTGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE+ R W +P+ LD E M AA+ LVG HDFTTFRS+ CQ+ SP++T+D DV Sbjct: 120 APLTLERNRLWQVPQDLDHEAMDRAAKALVGLHDFTTFRSVQCQSQSPVKTLDRLDVERD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS VG L LVG G+W L +AL+A+DR+ G APP GLY Sbjct: 180 GEEVRIHAAARSFLHHQVRSVVGCLALVGMGRWREEQLAEALEAKDRQALGLNAPPHGLY 239 Query: 241 FDSVEY 246 F + Y Sbjct: 240 FVAATY 245 >gi|295691224|ref|YP_003594917.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756] gi|295433127|gb|ADG12299.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756] Length = 247 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G Y G+Q Q S+QG+IE A+ G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGRPYAGFQAQATLPSVQGAIEAAVKAFCGQDVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L + +SIL+ + + +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLEKDWPAQTVFNALNAHL-THEAVSILSAEVAEGDWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+KGR W + K LD E M AAQHLVG HDFTTFR +HCQ+ SP++T+D V Sbjct: 120 APPALDKGRVWHMKKDLDAEAMHAAAQHLVGLHDFTTFRDMHCQSKSPVKTLDVARVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + ARSFLH Q+RS G+L VG G+WT D++ AL+A+DR+ECGP+AP +GLY Sbjct: 180 GEEIHLDFEARSFLHRQVRSMTGTLVEVGAGRWTPDDVKAALEAKDRRECGPVAPADGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LVGVGY 245 >gi|307943162|ref|ZP_07658507.1| tRNA pseudouridine synthase A [Roseibium sp. TrichSKD4] gi|307773958|gb|EFO33174.1| tRNA pseudouridine synthase A [Roseibium sp. TrichSKD4] Length = 271 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 127/246 (51%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ NG S QG IE+AI +GE V + GAGRTD+GVHAL Q Sbjct: 1 MPRYKLTVEYDGRPFCGWQRQSNGPSAQGVIERAIKAFSGEDVTIGGAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +W + ALN + + D + IL F ARFSAIRRSY YRI R Sbjct: 61 VAHADLSEDWPEKTVMGALNFHCQ-PDPVVILACEKKHDGFDARFSAIRRSYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL E G AW + LD + M AAQ VG HDFTTFR CQA SP++T+++F V Sbjct: 120 PPLTHELGLAWHVKHELDADAMNEAAQEFVGHHDFTTFRHSRCQAKSPVKTLENFTVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I +RSFLH Q+RS VG+L+LVG+G+WT++D+ +AL A+DRK CGP+AP +GLY Sbjct: 180 GEIILAECSSRSFLHNQVRSMVGTLRLVGEGRWTASDVGEALAARDRKACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|87200906|ref|YP_498163.1| tRNA pseudouridine synthase A [Novosphingobium aromaticivorans DSM 12444] gi|87136587|gb|ABD27329.1| tRNA pseudouridine synthase A [Novosphingobium aromaticivorans DSM 12444] Length = 254 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/245 (51%), Positives = 169/245 (68%), Gaps = 1/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + +E+NG Y G+QRQ +G S+Q ++E+A+ VTGE V ++ AGRTD+GVHAL A Sbjct: 7 RFALTLEWNGGPYMGFQRQSHGPSVQQAVEEAVHSVTGEAVALNAAGRTDTGVHALGMRA 66 Query: 63 HFDLVREWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL R + P + +ALNA L+++ +++L+ V +HARFS R+Y YRII R+A Sbjct: 67 HFDLSRAFDPFRMMEALNARLRLAGHPVAVLDCIEVAPDWHARFSCTGRAYEYRIINRRA 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 PL L+ GRAW I K LD M AAQ LVG HDFTTFRS+HCQ++SP++T+D DV G Sbjct: 127 PLTLDLGRAWRIAKPLDETVMHEAAQLLVGHHDFTTFRSVHCQSASPLKTLDRLDVRRDG 186 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + ARSFLH Q+RS VG L LVG G+W+ L +AL A+DR G APPEGLYF Sbjct: 187 DRVIVEAAARSFLHHQVRSMVGCLALVGQGQWSVAQLGEALAAKDRSRLGLNAPPEGLYF 246 Query: 242 DSVEY 246 S +Y Sbjct: 247 VSAQY 251 >gi|23016535|ref|ZP_00056290.1| COG0101: Pseudouridylate synthase [Magnetospirillum magnetotacticum MS-1] Length = 256 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/246 (50%), Positives = 167/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ G S+QG +E+A+ +TG ++ AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGVLEQAVEKLTGSPCTINAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R++ + ALN ++K ++++ +V FHARFSA+ RSYLYRI+ R+ Sbjct: 61 VAHVDLPRDYPADTVRDALNYHMK-PKPVAVVAAELVGDDFHARFSAVGRSYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLAL++ RAW +P SLD E M A+ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 120 APLALDQHRAWWVPVSLDAEAMAEGARRLLGHHDFTTFRASECQAKSPMKTLDVLDVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH Q+R+ VG+LKLVG+GKW+ D+ +AL A DR + GP AP GL Sbjct: 180 GEEIRIIAEARSFLHHQVRNMVGTLKLVGEGKWSPDDMARALAACDRTKGGPTAPAAGLC 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVSY 245 >gi|90422327|ref|YP_530697.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18] gi|123089809|sp|Q21B58|TRUA_RHOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|90104341|gb|ABD86378.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18] Length = 245 Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 131/246 (53%), Positives = 172/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ Y GWQ Q NG S+QG++E A+ + G+ V V+GAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGAPYCGWQIQDNGPSVQGALETAVKAICGKFVRVNGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +E+ P L LNA+L+ I +L+ IV F ARFSAI+R Y+YRI R+ Sbjct: 61 VAHCDIAKEFAPGRLRDGLNAHLR-PHPIGVLSAEIVPDDFEARFSAIKRHYVYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G+ W +P+ LD + M AAQ LVG+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALQIGKVWRLPRRLDTDAMHAAAQRLVGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDNVSIITSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRTACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|326388515|ref|ZP_08210109.1| tRNA pseudouridine synthase A [Novosphingobium nitrogenifigens DSM 19370] gi|326206980|gb|EGD57803.1| tRNA pseudouridine synthase A [Novosphingobium nitrogenifigens DSM 19370] Length = 261 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 170/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G+ + G+QRQ +G S+Q ++E+A V GE +V+H AGRTD+GVHA Sbjct: 1 MTRFALTLEWDGTPFMGFQRQAHGPSVQQAVEEATQSVIGEEIVLHAAGRTDTGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH +L R++ P L +A+NA LK I++L+ V +HARFS I R+Y YRII R+ Sbjct: 61 RAHLELSRDFDPFRLGEAINARLK-PHPIAVLDCVRVADDWHARFSCIGRAYEYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE GRAW + + LD E M AAQ LVG HDFTTFRS+HCQA+SP++T+D DV Sbjct: 120 APLTLEAGRAWRVTRPLDAEAMHEAAQVLVGHHDFTTFRSVHCQAASPLKTLDRLDVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L LVG G+W D+ AL+A++R + G APPEGLY Sbjct: 180 GDEVLIAAAARSFLHHQVRSMVGCLALVGLGQWNRDDMAAALEAKNRCKLGLNAPPEGLY 239 Query: 241 FDSVEY 246 F S +Y Sbjct: 240 FISAQY 245 >gi|328545265|ref|YP_004305374.1| tRNA pseudouridine synthase A [polymorphum gilvum SL003B-26A1] gi|326415007|gb|ADZ72070.1| tRNA pseudouridine synthase A [Polymorphum gilvum SL003B-26A1] Length = 276 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 121/246 (49%), Positives = 163/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+Q IE+A+ GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGRPFCGWQRQANGPSVQAVIERAVKAFCGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W + ALN + + D +++L + F +RFSAIRR+Y YRI+ R Sbjct: 61 VAHVDLSRDWPADTVLGALNFHCQ-PDPVALLACEKMHAGFDSRFSAIRRAYRYRIVNRV 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL E+G AW + LD E M AAQ VG HDFTTFR CQA SP++T++ F V Sbjct: 120 PPLTYERGLAWHVKPPLDAEAMHAAAQVFVGHHDFTTFRHARCQAKSPVKTLEFFAVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ +RSFLH Q+RS VG+L+LVG+G+W + + +AL A++RK CGP+APP+GLY Sbjct: 180 GDVVVAECASRSFLHNQVRSMVGTLRLVGEGRWDAQTVREALAARNRKACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|126462985|ref|YP_001044099.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029] gi|166228755|sp|A3PLW1|TRUA_RHOS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126104649|gb|ABN77327.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029] Length = 255 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 123/251 (49%), Positives = 164/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVREW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVREWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SP++T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDPEAMRAGAAHLVGRHDFTTFRAAGCQAASPVKTLDALTLETV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL+A DR CGP+ PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALEAHDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|304392304|ref|ZP_07374245.1| tRNA pseudouridine synthase A [Ahrensia sp. R2A130] gi|303295408|gb|EFL89767.1| tRNA pseudouridine synthase A [Ahrensia sp. R2A130] Length = 251 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 129/251 (51%), Positives = 162/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY IIEY+G Y GWQRQ + S+QG+IE A+ + +V GAGRTD+GVHAL Q Sbjct: 1 MGRYRFIIEYDGKPYAGWQRQPDQPSVQGAIEAALGRLGEPDPIVQGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R W L +ALNA+L K D ++I++ D +FHARFSA +R+YLYRII Sbjct: 61 VAHSDLTRPWTGFRLAEALNAHLRKAGDPVAIIDCEPCDDEFHARFSATQRAYLYRIIDH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF---D 176 +APLA++ GRAW + LD + M AA LVG HDFTTFRS CQA SP++T+ Sbjct: 121 RAPLAVDAGRAWNVKTPLDVDAMNKAAARLVGEHDFTTFRSTECQARSPVKTLGTLVATR 180 Query: 177 VNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G + +EI ARS+LH Q+RS G L+LVG GKW+ D +L A DR C P+AP Sbjct: 181 VQRHGRSEVEITTTARSYLHNQVRSLAGCLRLVGCGKWSPDDAAASLAAMDRTACAPVAP 240 Query: 236 PEGLYFDSVEY 246 GLY SV Y Sbjct: 241 AHGLYLTSVTY 251 >gi|77464142|ref|YP_353646.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides 2.4.1] gi|123591335|sp|Q3J0D9|TRUA_RHOS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77388560|gb|ABA79745.1| tRNA pseudouridine synthase [Rhodobacter sphaeroides 2.4.1] Length = 255 Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/251 (49%), Positives = 165/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVREW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVREWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SP++T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDPEAMRAGAAHLVGRHDFTTFRAAGCQAASPVKTLDALTLETV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP++PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVSPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|315497922|ref|YP_004086726.1| tRNA pseudouridine synthase a [Asticcacaulis excentricus CB 48] gi|315415934|gb|ADU12575.1| tRNA pseudouridine synthase A [Asticcacaulis excentricus CB 48] Length = 257 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++EY+G Y G+Q Q N ++QGS+E+AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYSCLVEYDGRPYKGFQAQDNLPTVQGSLERAILGFSGETLRITAAGRTDTGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FDL + + P ++ A+NAYL I + I++ +IVD F ARFSA R YLYRI+ R+ Sbjct: 61 VITFDLPKTYRPDVVRDAMNAYL-IPEPIAVREAAIVDDDFSARFSATGRMYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE+GR W + K LD E M AAQHL+GRHDFTTFR CQA+SPI+T+D V Sbjct: 120 APPALEQGRVWHVKKPLDAEVMADAAQHLIGRHDFTTFRDTECQAASPIKTLDIARVKRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + +RSFLH Q+RS G+L G G+WT+ D++ AL+A+DR+ CG +APPEGL Sbjct: 180 GEEIHLVFASRSFLHRQVRSMTGTLVEAGIGRWTAADVKAALEARDRRACGQVAPPEGLC 239 Query: 241 FDSVEY 246 V + Sbjct: 240 LTHVTF 245 >gi|103485743|ref|YP_615304.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256] gi|123253621|sp|Q1GWK1|TRUA_SPHAL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|98975820|gb|ABF51971.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256] Length = 246 Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 164/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G Y GWQRQ +G S+Q +IE+AI T E V V AGRTD+GVHA+ Sbjct: 1 MTRFALTIEYDGRPYMGWQRQAHGPSVQQAIEEAIHRFTAEEVQVLSAGRTDAGVHAIAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +ALNA L+ + I+++ +V +HARF+ I RSY YRI+ R+ Sbjct: 61 RAHVDIEKPLTPFKLTEALNAQLRPA-PIAVIGCEVVPDDWHARFACIGRSYEYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +KG AW + + LD + M AAQ L+G HDFTTFRS HCQ+ SP++T+D V+ Sbjct: 120 APLTWDKGLAWQVARPLDVDAMHEAAQQLIGLHDFTTFRSAHCQSQSPVKTLDRLTVSRH 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS VGSL LVG GKW++ DL+ AL+A DR+ G APP+GLY Sbjct: 180 GEEVIIEAAARSFLHHQVRSMVGSLALVGHGKWSARDLKAALEAADRQALGLNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVGAVY 245 >gi|16124533|ref|NP_419097.1| tRNA pseudouridine synthase A [Caulobacter crescentus CB15] gi|221233219|ref|YP_002515655.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000] gi|42559871|sp|Q9ABF0|TRUA_CAUCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789610|sp|B8GYF0|TRUA_CAUCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13421415|gb|AAK22265.1| tRNA pseudouridine synthase [Caulobacter crescentus CB15] gi|220962391|gb|ACL93747.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000] Length = 247 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G Y G+Q Q S+QG+IE A+ G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGRPYAGFQAQATLPSVQGAIEAAVKAFCGQEVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L + +SIL+ + ++ +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLDKDWPAQTVFNALNAHL-TREAVSILSAEVAEEGWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+KGR W + K LD E M AAQHL+G HDFTTFR +HCQ+ SP++T+D V Sbjct: 120 APPALDKGRVWHMKKDLDHEAMHAAAQHLIGLHDFTTFRDMHCQSKSPVKTLDVARVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + ARSFLH Q+RS G+L VG G+WT D++ AL+A+DR+ECGP+AP +GLY Sbjct: 180 GEEIHLDFEARSFLHRQVRSMTGTLVEVGAGRWTVDDVKAALEARDRRECGPVAPADGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LVGVGY 245 >gi|254473752|ref|ZP_05087147.1| tRNA pseudouridine synthase A [Pseudovibrio sp. JE062] gi|211957138|gb|EEA92343.1| tRNA pseudouridine synthase A [Pseudovibrio sp. JE062] Length = 302 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I+Y+G + GWQRQ NG ++QG IE+AI TGE V + GAGRTDSGVHA Q Sbjct: 27 MPRYKITIDYDGRPFVGWQRQDNGPTVQGVIERAIKSFTGETVTIGGAGRTDSGVHATGQ 86 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALN + + D ++IL+ F ARFSAIRR Y Y+I R Sbjct: 87 VAHLDLSKDWPAETVKNALNFHAQ-PDPVAILDCEKAGLGFDARFSAIRRHYRYKIANRL 145 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL ++G AW + LD E M AAQ L+G HDFTTFR CQA SP +T++ V Sbjct: 146 EPLTHDRGLAWYVKPELDAEAMNEAAQVLLGHHDFTTFRHTRCQAKSPWKTMERICVYRQ 205 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + +RSFLH Q+RS VGSL+LVG+G+WT DL+ AL+A DRK CGP+A PEGLY Sbjct: 206 GYHVFLECSSRSFLHNQVRSMVGSLRLVGEGRWTKDDLKAALEACDRKACGPVAVPEGLY 265 Query: 241 FDSVEY 246 V+Y Sbjct: 266 LTQVDY 271 >gi|221640010|ref|YP_002526272.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131] gi|254764862|sp|B9KKX4|TRUA_RHOSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221160791|gb|ACM01771.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131] Length = 255 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/251 (49%), Positives = 165/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLELGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLAREWDPFRLAGALNAHLK-PLPVAIVAAARVSEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SPI+T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASPIKTLDALTLETV 179 Query: 181 --GNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N E R + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP+ PP Sbjct: 180 EGANGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|167648522|ref|YP_001686185.1| tRNA pseudouridine synthase A [Caulobacter sp. K31] gi|189029993|sp|B0T1S6|TRUA_CAUSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167350952|gb|ABZ73687.1| tRNA pseudouridine synthase A [Caulobacter sp. K31] Length = 249 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/246 (49%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G Y G+Q Q + S+QG+IE A+ TG+ + + AGRTD+GVHA Q Sbjct: 1 MPRYRLTIEYDGRPYNGFQAQASQPSVQGAIEAAVKAFTGQTIRIAAAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL R+W + ALNA+L + + IS+L+ +V +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLERDWPAETVMNALNAHL-VREAISVLDAVVVSDDWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE+G+ W + K +D + M+ AAQ LVG HDFTTFR + CQA SP++T+D V+ Sbjct: 120 APPALERGKVWHVKKPIDADAMQTAAQALVGLHDFTTFRDMACQAKSPLKTLDVARVSRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + ARSFLH Q+RS G+L VG G+WT+ D+ AL+A+DR CGP+AP +GLY Sbjct: 180 GDEVHLVFEARSFLHRQVRSMTGTLAEVGVGRWTADDVMAALEARDRTACGPVAPADGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVGY 245 >gi|332559018|ref|ZP_08413340.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N] gi|332276730|gb|EGJ22045.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N] Length = 255 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 163/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLARDWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SPI+T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASPIKTLDALTLETV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP+ PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|115522681|ref|YP_779592.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisA53] gi|122297686|sp|Q07TX2|TRUA_RHOP5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115516628|gb|ABJ04612.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisA53] Length = 246 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 132/247 (53%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ Y GWQ Q+NG SIQG++E A + GE + V GAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGTPYCGWQIQENGPSIQGALEDAAKAICGEAIRVRGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++ P L ALNA+L+ I ++ IV F ARFSAI+R Y+YRI R+ Sbjct: 61 VAHCDVPKQLPPGRLRDALNAHLR-PQPIGVITAEIVPDDFEARFSAIKRHYVYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL RAW +P+ LD + M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALAINRAWRVPRRLDSDAMHEAAQRLIGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDEIRIVTSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARSRSACGPVAPPDGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LVKVDYE 246 >gi|294012442|ref|YP_003545902.1| tRNA pseudouridine synthase A [Sphingobium japonicum UT26S] gi|292675772|dbj|BAI97290.1| tRNA pseudouridine synthase A [Sphingobium japonicum UT26S] Length = 248 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/246 (52%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q ++E AIF VTGE V VH AGRTD+GVH L Sbjct: 1 MARFAFTVEFDGRPFMGWQRQAHGPSVQQAMEDAIFSVTGERVAVHAAGRTDAGVHGLGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ ++ P L +ALNA L+ + ++IL V +HARFS RSY+YRI+ R+ Sbjct: 61 RAHADIAKDMTPFRLMEALNARLRPA-PVAILACETVPDDWHARFSCTGRSYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E G AW + + LD E M+ AAQ LVGRHDFTTFRS+HCQA SP++T+D DV Sbjct: 120 APLTWESGLAWRVIQPLDAEAMQRAAQLLVGRHDFTTFRSVHCQAESPVKTLDRLDVERA 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L +VG G+W+ DLE A A+DR G APP+GLY Sbjct: 180 GDRLAIHAEARSFLHHQVRSMVGCLVMVGMGRWSVGDLEAARDAKDRAALGLNAPPDGLY 239 Query: 241 FDSVEY 246 F S Y Sbjct: 240 FVSAHY 245 >gi|83951133|ref|ZP_00959866.1| tRNA pseudouridine synthase A [Roseovarius nubinhibens ISM] gi|83839032|gb|EAP78328.1| tRNA pseudouridine synthase A [Roseovarius nubinhibens ISM] Length = 258 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 122/250 (48%), Positives = 171/250 (68%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYHGAPFAGWQRQKDQPSVQGAIEAALSALEPGAHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK + ++I + V + +HARFSA+ R YL+R++TR+ Sbjct: 61 VAHCDLRRDWDPFRLSEALNYHLKPA-PVAITACAPVAEDWHARFSALERRYLFRLLTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W IP LD + M+ A +HLVGRHDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGLVWQIPHRLDTDAMQTACRHLVGRHDFTTFRSSICQAASPVKTLDELTITEH 179 Query: 181 GNLI--EIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + E+R + ARSFLH Q+RSFVG+L+ VG G+W+ D++ AL A++R CGP++PP Sbjct: 180 EGVSGWEVRFFLRARSFLHNQVRSFVGTLERVGAGRWSPDDVKAALDARNRAACGPVSPP 239 Query: 237 EGLYFDSVEY 246 GLY VEY Sbjct: 240 HGLYLAGVEY 249 >gi|300024227|ref|YP_003756838.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans ATCC 51888] gi|299526048|gb|ADJ24517.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans ATCC 51888] Length = 246 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 132/247 (53%), Positives = 171/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ G SIQG++E AI +GE V GAGRTD+GVHAL Q Sbjct: 1 MPRYRITIEYDGTPFIGWQRQAEGVSIQGALETAIRKFSGEAPGVRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + W P + A+N +L+ + I ++ + VD F ARFSA++R Y YR++TR+ Sbjct: 61 VAHFDLEKTWEPGRIRDAMNFHLR-PNPIGVVAAAQVDDAFDARFSAVKRYYEYRLLTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP L++ R W ++LD M AAQ LVG+HDFTTFR+ CQA SP++T+D FDV+ Sbjct: 120 APPILQRHRVWWTMQNLDAAAMHAAAQELVGKHDFTTFRAAQCQAKSPVKTLDVFDVSRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I RV ARSFLH Q+RS VGSLKLVG+GKW+ DL AL A +R+ CGP+AP GLY Sbjct: 180 GEEIVCRVSARSFLHHQVRSMVGSLKLVGEGKWSRADLASALAAANREACGPVAPAAGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LVGVDYE 246 >gi|144900443|emb|CAM77307.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1] Length = 245 Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 164/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++IEY+G+ + GWQRQ NG S+QG +E AIF G V AGRTD+GVHA Q Sbjct: 1 MPRFKLLIEYHGTPFVGWQRQDNGISVQGEVEAAIFRFCGLETTVTAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL R+ + ALN +LK I++ + IV FHARFSA+ RSYLYRI+ R+ Sbjct: 61 VIHFDLDRDVSAERVQGALNYHLK-PHPIAVRAVEIVPDDFHARFSALGRSYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP+A+E+ R W + L+ E M+ AAQHL+GRHDFT+FR+ CQA SP +T+D V Sbjct: 120 APVAIERERVWWVSVPLNAEAMQEAAQHLLGRHDFTSFRAAACQAQSPDKTLDLLQVTRT 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + ARSFLH Q+R+ VG+LKLVG+GKW ++ AL+A+DR GP APP+GLY Sbjct: 180 DEEIRMIAEARSFLHHQVRNMVGTLKLVGEGKWHPDRVKAALEARDRAAAGPTAPPDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVVY 245 >gi|83859280|ref|ZP_00952801.1| tRNA pseudouridine synthase A [Oceanicaulis alexandrii HTCC2633] gi|83852727|gb|EAP90580.1| tRNA pseudouridine synthase A [Oceanicaulis alexandrii HTCC2633] Length = 253 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 159/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+QG++E A + G V+GAGRTDSGVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFVGWQRQDNGPSVQGALEAAAAKLDGGPREVYGAGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++ + A+N +LK I+++ V +FHARF A RR Y+YR+ R+ Sbjct: 61 VAHVDLEKDLPADKVRDAINHHLK-PHPIAVVEAVRVTDEFHARFKAHRRGYIYRLHARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L +G+ W + + LD E M AAQHLVG HDFTTFR CQA SP++++D V Sbjct: 120 APLTLTRGQVWRVYQPLDVEAMHTAAQHLVGTHDFTTFRDSQCQADSPVKSLDKIAVFHS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + V A SFLH Q+RS VGSL VG GKWT D + AL A DR CGP+APP+GLY Sbjct: 180 GEEIHVTVEAISFLHRQVRSIVGSLVEVGLGKWTPEDFKAALDAADRSRCGPVAPPDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LSLVAY 245 >gi|110679351|ref|YP_682358.1| tRNA pseudouridine synthase A [Roseobacter denitrificans OCh 114] gi|122972811|sp|Q168C1|TRUA_ROSDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109455467|gb|ABG31672.1| tRNA pseudouridine synthase A [Roseobacter denitrificans OCh 114] Length = 260 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 125/250 (50%), Positives = 165/250 (66%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EYNG+ + GWQRQK +IQG+IE+A+ + + AGRTD+GVHA+ Q Sbjct: 1 MHRYALKVEYNGAPFVGWQRQKEHPTIQGAIERALGKIAPGPHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK + I+I + VD ++HARFSA +R YL+RI+ R+ Sbjct: 61 VAHCDLERDWDPFRLSEALNYHLKPA-PIAITACTAVDAEWHARFSARQRQYLFRILCRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP +KG W + + LD MR AA L+G+HDFTTFRS CQA SP++T+D DVN Sbjct: 120 APATHQKGLVWQVKQKLDVTAMREAAALLIGQHDFTTFRSTICQAESPVKTLDRLDVNEV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +G I V ARSFLH Q+RSFVG+L+ VG G T D+ +AL +DR CGP+ PP Sbjct: 180 DTPYGREIHFDVRARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAHVVY 249 >gi|163733492|ref|ZP_02140935.1| tRNA pseudouridine synthase A [Roseobacter litoralis Och 149] gi|161393280|gb|EDQ17606.1| tRNA pseudouridine synthase A [Roseobacter litoralis Och 149] Length = 256 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 123/250 (49%), Positives = 168/250 (67%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK S++QG+IE+A+ + + AGRTD+GVHA+ Q Sbjct: 1 MHRYALKVEYHGAPFVGWQRQKEHSTVQGAIEQALGKIAPAPHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVR+W P L +ALN +LK + I+I ++VD +HARFSA +R YL+RI+ R+ Sbjct: 61 VAHCDLVRDWDPFRLSEALNYHLKPA-PIAITACTVVDADWHARFSARQRQYLFRILCRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP ++G W + ++LD MR AA L+G+HDFTTFRS CQA SP++T+D DV+ Sbjct: 120 APATHQRGLVWQVKQNLDVAAMREAAALLIGQHDFTTFRSTICQAESPVKTLDRLDVSEV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +G I V ARSFLH Q+RSFVG+L+ VG G T D+ +AL +DR CGP+ PP Sbjct: 180 ETPYGREIHFDVRARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 YGLYLAHVVY 249 >gi|316932092|ref|YP_004107074.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1] gi|315599806|gb|ADU42341.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1] Length = 245 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPKLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH ++ + + L ALNA+L+ + +++L IV + F ARFSA+RR Y YRI R+ Sbjct: 61 VAHVEIAKPFRADKLRDALNAHLR-PNPVAVLAAEIVPETFEARFSAVRRHYRYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALDIGKVWRVPKPLDSDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVIRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 180 GDAVDIVTNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARKRSACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|254460774|ref|ZP_05074190.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2083] gi|206677363|gb|EDZ41850.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium HTCC2083] Length = 259 Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 124/250 (49%), Positives = 159/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK S+QG IE A+ + + AGRTDSGVHA Q Sbjct: 1 MPRYALKVEYHGAPFVGWQRQKTHVSVQGQIEAALAKLEPGNHTIGAAGRTDSGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L ALN +LK D ISI+ + V+ +HARFSA+ R Y +R++ R+ Sbjct: 61 VAHCDLAKDWDPFKLSGALNYHLK-PDPISIVACAEVNDDWHARFSALERRYEFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + G W +P LD M+ AQHL+G HDFTTFRS CQA SP++T+D V Sbjct: 120 PPATHDAGLVWQVPHLLDVNAMQAGAQHLLGLHDFTTFRSSICQAQSPLKTLDELKVRQI 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L VG G WT D++ ALQAQDR+ CGP++PP Sbjct: 180 DGPSGPEIRFTVRARSFLHNQVRSFVGTLGSVGSGAWTPDDVKSALQAQDRQACGPVSPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAHVTY 249 >gi|197103844|ref|YP_002129221.1| tRNA pseudouridine synthase [Phenylobacterium zucineum HLK1] gi|196477264|gb|ACG76792.1| tRNA pseudouridine synthase [Phenylobacterium zucineum HLK1] Length = 246 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 121/246 (49%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G + G+Q Q +IQG+IE+A+ GE + + AGRTD+GVHA Q Sbjct: 2 MPRYRLLIEYDGRPFNGFQAQDGLPTIQGAIERAVKAFCGEDLRLQAAGRTDTGVHARGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L + I++L S+ + +HARFSA R YLYRI+ R Sbjct: 62 VVHVDLAKDWPAETVRNALNAHL-VPQPIAVLEASVAPEGWHARFSAKERRYLYRILNRM 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL++GR W + K LD E M AAQ LVG HDFTTFR + CQA SP++T+D V Sbjct: 121 APPALDQGRVWHVKKPLDAEAMHEAAQALVGHHDFTTFRDLGCQAKSPMKTLDLASVRRE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + +RSFLH Q+RS G+L VG G+WT DL AL+A+DR+ CGP+AP EGLY Sbjct: 181 GDEVLLEFASRSFLHRQVRSMTGTLAEVGVGRWTRADLVAALEARDRRACGPVAPAEGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LTGVAY 246 >gi|89055953|ref|YP_511404.1| tRNA pseudouridine synthase A [Jannaschia sp. CCS1] gi|123400973|sp|Q28LN3|TRUA_JANSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88865502|gb|ABD56379.1| tRNA pseudouridine synthase A [Jannaschia sp. CCS1] Length = 261 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 121/251 (48%), Positives = 161/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY IEY+G + GWQRQ + S+QG++E A+ + ++ + AGRTD+GVHAL Q Sbjct: 1 MPRYAFRIEYDGHPFKGWQRQTDLPSVQGAVEAALAKLEADVPTIAAAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK + ++I + FHARFSA RSY YR+I R+ Sbjct: 61 VAHADMQRDWDPFRLAEALNYHLKPA-PVAITACARAHDDFHARFSATWRSYTYRMICRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +G AW + +LD M A+HL+G+HDFTTFR+ HCQA SPI+T+D V Sbjct: 120 APLVHARGHAWAVRGTLDVTAMAEGARHLIGKHDFTTFRATHCQALSPIKTMDEIRVEEV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I + A+SFLH Q+RS VGSL+ VG G W D+ +AL+A DR ECG +APP Sbjct: 180 SLPAGTEIRFHLKAQSFLHNQVRSIVGSLEHVGSGAWAPDDMRRALEACDRAECGTVAPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 DGLYMTGVGYD 250 >gi|86747801|ref|YP_484297.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris HaA2] gi|123293209|sp|Q2J2C4|TRUA_RHOP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|86570829|gb|ABD05386.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris HaA2] Length = 245 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 127/246 (51%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPTLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+++ I++L+ +V F ARFSAIRR Y YRI+ R+ Sbjct: 61 VAHVDIPKPFRADKLRDALNAHVR-PHPIAVLSAELVADDFEARFSAIRRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALELGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPAKTLDVLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|254510182|ref|ZP_05122249.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11] gi|221533893|gb|EEE36881.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11] Length = 255 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 121/250 (48%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQK S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYHGEPFAGWQRQKEQPSVQGAIEAALSRIEPGDHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK ++I+ + V+ +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDLTKDWDPFRLSEALNYHLK-PQPVAIVKAARVNDDWHARFSALERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP +KG+ W I +LD M+ A L+G+HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDKGQVWQINHTLDVAAMQAGADMLIGQHDFTTFRSSICQAASPVKTLDALRVEQV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G WT D+ AL+A DR CGP+ PP Sbjct: 180 QGFSGAEIHFHVRARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALEAADRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLARVGY 249 >gi|126736576|ref|ZP_01752316.1| tRNA pseudouridine synthase A [Roseobacter sp. CCS2] gi|126713889|gb|EBA10760.1| tRNA pseudouridine synthase A [Roseobacter sp. CCS2] Length = 255 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/250 (47%), Positives = 167/250 (66%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYHGAPFAGWQRQNDQPSVQGAIEAALAKLEPRDHTIAAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK + ++I+N + V +HARF A+ R YL+R+++R+ Sbjct: 61 VAHCDMERDWDPFRLSEALNFHLKPA-PVAIVNCAQVADDWHARFDAVERQYLFRLMSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + G+ W + LD + M+ A L+G+HDFTTFRS CQA SP++T+D V + Sbjct: 120 APLTSDAGQMWRVKHPLDADAMQAGADQLLGQHDFTTFRSSICQAKSPVKTLDALRVEAL 179 Query: 181 --GNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N E R V ARSFLH Q+RSFVG+L+ VG WT D+ KAL A+DR CGP+ PP Sbjct: 180 PHANGTEYRFHVRARSFLHNQVRSFVGTLERVGAEAWTPDDVGKALAAKDRSACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY +V+Y Sbjct: 240 QGLYLAAVKY 249 >gi|83943967|ref|ZP_00956424.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36] gi|83954540|ref|ZP_00963251.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1] gi|83840824|gb|EAP79995.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1] gi|83845214|gb|EAP83094.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36] Length = 262 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/251 (47%), Positives = 168/251 (66%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + +S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MQRYALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIEPRAHNIAAAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +A+N +LK I+I++ VD FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMERDWTPFRLSEAINYHLK-PLPIAIVDCVAVDDDFHARFSALERRYLFRVLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 P + G W + K LD + MR AA HL+G HDFTTFRS CQA +P++T+D D+ + Sbjct: 120 PPATHQAGLVWQVKKPLDIDRMREAATHLIGEHDFTTFRSTICQAQTPVKTLDRVDMTEH 179 Query: 179 SFGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G +E++ V ARSFLH Q+RS VG+L+ VG G + D+++ L A+DR+ CGP+APP Sbjct: 180 PVGGGVEVQFDVRARSFLHNQVRSIVGTLERVGAGSFAPDDVKQMLAARDRQACGPVAPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLSHVTYE 250 >gi|84515131|ref|ZP_01002494.1| tRNA pseudouridine synthase A [Loktanella vestfoldensis SKA53] gi|84511290|gb|EAQ07744.1| tRNA pseudouridine synthase A [Loktanella vestfoldensis SKA53] Length = 257 Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 160/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ S+QG+IE A+ ++ + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYHGAPFAGWQRQTGLPSVQGAIEAALAKLSPGPHTIAAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +W P L +ALN +LK D ++IL ++V +HARF A+ R YL+R+I R+ Sbjct: 61 VAHCDLPGDWDPFRLSEALNYHLK-PDPVAILGCALVADDWHARFDAVERQYLFRVIARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 APL E G+ W + LD M+ A HL+G HDFTTFRS CQA SP++T+D + Sbjct: 120 APLTSEAGQMWRVNHDLDAAAMQAGADHLLGLHDFTTFRSSICQAKSPVKTLDELRIEVV 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G V ARSFLH Q+RSFVG+L+ VG G W D+ +AL A+DR CGP+ PP Sbjct: 180 QRAIGTEYRFHVRARSFLHNQVRSFVGTLERVGAGAWQPGDVARALTARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLAGVRYP 250 >gi|307294617|ref|ZP_07574459.1| tRNA pseudouridine synthase A [Sphingobium chlorophenolicum L-1] gi|306879091|gb|EFN10309.1| tRNA pseudouridine synthase A [Sphingobium chlorophenolicum L-1] Length = 248 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q +IE AIF V+GE V+H AGRTD+GVH + Sbjct: 1 MTRFAFTVEFDGRPFMGWQRQAHGPSVQQAIEDAIFAVSGERAVIHAAGRTDAGVHGIAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ ++ P L +ALNA L+ I+IL V +HARFS + RSY+YRI R+ Sbjct: 61 RAHADIAKDMAPFRLMEALNARLR-PHPIAILACEAVPDDWHARFSCVGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E G W + + LD + M+ AAQ LVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTWENGLVWRVIQPLDTDAMQEAAQLLVGRHDFTTFRSAHCQAESPVKTLDRLDVERS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L LVG G+W+ DLE A A+DR G APP+GLY Sbjct: 180 GDRLAIYAEARSFLHHQVRSMVGCLALVGMGRWSIGDLEAARDARDRAALGLNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVRARY 245 >gi|254487927|ref|ZP_05101132.1| tRNA pseudouridine synthase A [Roseobacter sp. GAI101] gi|214044796|gb|EEB85434.1| tRNA pseudouridine synthase A [Roseobacter sp. GAI101] Length = 256 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 117/251 (46%), Positives = 166/251 (66%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEYNG+ Y GWQRQ +++QG IE A+ V + AGRTD GVHAL Q Sbjct: 1 MYRYALKIEYNGAPYVGWQRQIGLATVQGVIEDALAKVEPRAHKIAAAGRTDGGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN ++K + +++++ + V +FHARFSA R Y +RI+ R+ Sbjct: 61 VAHCDMERDWDPFRLSEALNFHMK-PNPVAVVDCAPVGPEFHARFSAQERRYQFRILVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W + K LD + MR A+HL+G+HDFTTFRS CQA++P++T+D D+++ Sbjct: 120 APATHQAGLVWQVKKPLDLDAMRAGARHLIGQHDFTTFRSTICQAATPVKTVDRIDISAV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L + + V ARSFLH Q+RSFVG+L+ VG G T D++ A+DR+ CGP++PP Sbjct: 180 ETLGGLEVHLDVRARSFLHNQVRSFVGTLERVGAGSLTPDDVKVMRDARDRQACGPVSPP 239 Query: 237 EGLYFDSVEYS 247 GLY V+Y Sbjct: 240 HGLYLAHVDYP 250 >gi|192289057|ref|YP_001989662.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1] gi|192282806|gb|ACE99186.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1] Length = 245 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 127/246 (51%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPALPSVQGALEVAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+L+ + +++L IV F ARFSA+RR Y YRI R+ Sbjct: 61 VAHVDIPKPFRADKLRDALNAHLR-PNPVAVLAAEIVPDTFEARFSAVRRHYRYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALDLGKVWRVPKQLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 180 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LMQVDY 245 >gi|163795438|ref|ZP_02189405.1| Pseudouridylate synthase [alpha proteobacterium BAL199] gi|159179424|gb|EDP63955.1| Pseudouridylate synthase [alpha proteobacterium BAL199] Length = 248 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 119/247 (48%), Positives = 164/247 (66%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ NG+++QG+IE A+F +G+ V V GAGRTD+GVHA Q Sbjct: 1 MTRYRLTVEYDGAPFVGWQRQDNGATVQGAIEDAVFAFSGQRVEVAGAGRTDTGVHAEGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL + + V + A+NA+L+ + FHARFSAI RSY Y I+ R Sbjct: 61 VAHIDLATDRFDAVTVMNAINAHLRPLPVAVVSASVAS-PDFHARFSAIWRSYRYVIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLAL+ GRAW + LD M A+ L+G HDFT+FR++HCQ+ SP++T+D V+ Sbjct: 120 RAPLALDLGRAWSVLAPLDVAAMSAGAERLIGHHDFTSFRAVHCQSKSPMKTLDVLQVSR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH Q+R+ VG+L+LVG+GKW D+ AL+A+DR GP AP +GL Sbjct: 180 HGERIVVEARARSFLHHQVRNMVGTLRLVGEGKWQPDDVTAALKARDRVAAGPTAPADGL 239 Query: 240 YFDSVEY 246 +V Y Sbjct: 240 TLTAVGY 246 >gi|118589718|ref|ZP_01547123.1| tRNA pseudouridine synthase A [Stappia aggregata IAM 12614] gi|118437804|gb|EAV44440.1| tRNA pseudouridine synthase A [Stappia aggregata IAM 12614] Length = 266 Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 121/246 (49%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ N S+Q IE+A +GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGRPFSGWQRQANAPSVQAVIERAAKAFSGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALN + + D + IL+ + + + F ARFSAIRRSY YRI R Sbjct: 61 VCHVDLSKDWDARTVMGALNFHCQ-PDPVVILDAAEMHEGFDARFSAIRRSYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + G AW + LD + M AAQ VG HDFTTFR CQA SP +T++ F V Sbjct: 120 PPLTHQLGLAWHVKVHLDADAMHAAAQEFVGHHDFTTFRHTRCQAKSPEKTLEEFRVYRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + +RSFLH Q+RS VGSL+LVG+GKW D+ KAL A+DR CGP+AP +GLY Sbjct: 180 GEFVIAECASRSFLHNQVRSMVGSLRLVGEGKWGPGDITKALAARDRNACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|254501121|ref|ZP_05113272.1| tRNA pseudouridine synthase A [Labrenzia alexandrii DFL-11] gi|222437192|gb|EEE43871.1| tRNA pseudouridine synthase A [Labrenzia alexandrii DFL-11] Length = 272 Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 119/246 (48%), Positives = 158/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ N S+Q IE+AI +GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGRPFSGWQRQANAPSVQAVIERAIKAFSGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALN + + D + IL+ + + F ARFSAIRR+Y YRI R Sbjct: 61 VCHADLSKQWPTKTVMGALNFHCQ-PDPVVILDCEEMHEGFDARFSAIRRAYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + G AW + LD + M AAQ VG HDFTTFR CQA SP +T++HF V Sbjct: 120 QPLTHQLGLAWHVKHELDADAMHQAAQEFVGHHDFTTFRHSRCQAKSPEKTLEHFSVYRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +RSFLH Q+RS VG+L+LVG+ +W D+ AL+A+DRK CGP+AP +GLY Sbjct: 180 GDFVIAECSSRSFLHNQVRSMVGTLRLVGEDRWGPGDITNALKARDRKACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|149203831|ref|ZP_01880800.1| tRNA pseudouridine synthase A [Roseovarius sp. TM1035] gi|149142948|gb|EDM30990.1| tRNA pseudouridine synthase A [Roseovarius sp. TM1035] Length = 258 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 164/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG++E A+ + + AGRTD+GVHA+ Q Sbjct: 1 MPRYALRIEYDGAPFAGWQRQVDHPSVQGAVEAALARIEPGSHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW L +ALN +LK ++I V + +HARFSA R YL+R+++R+ Sbjct: 61 VAHCDLTREWGTFRLSEALNYHLK-PLPVAITACVRVAEDWHARFSANERRYLFRVMSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--- 177 AP+ L++GR W + LD + MR AQHL+G HDFTTFRS CQA+SPI+T+D ++ Sbjct: 120 APVTLDRGRVWHVRPKLDIDAMRAGAQHLIGMHDFTTFRSTICQAASPIKTLDAIEISEH 179 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ G I R+ ARSFLH Q+RS VG+L+ VG G W ++ AL A+DR CGP+ PP Sbjct: 180 ESAMGPEIHFRLRARSFLHNQVRSIVGTLERVGAGSWHPDEVRAALNARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAGVSY 249 >gi|260431135|ref|ZP_05785106.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis ITI-1157] gi|260414963|gb|EEX08222.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis ITI-1157] Length = 255 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 123/251 (49%), Positives = 159/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G + GWQRQK S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYQGEPFAGWQRQKELPSVQGAIEAALSKLQPGSHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK ++IL + V +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLEKDWDPFRLSEALNYHLK-PLPVAILKAAQVADDWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP +KG+ W I LD M+ A L+GRHDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDKGQVWQIGHPLDVAAMQEGADMLIGRHDFTTFRSSICQAASPVKTLDELRVEQV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL+A DR CGP+ PP Sbjct: 180 QGFSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGAWTPQDVRDALEATDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLARVGYP 250 >gi|39933700|ref|NP_945976.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris CGA009] gi|42559720|sp|P60352|TRUA_RHOPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39647546|emb|CAE26067.1| putative tRNA-pseudouridine synthase [Rhodopseudomonas palustris CGA009] Length = 248 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 4 MPRYKLTIEYDGAPFCGWQLQPALPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+L+ + +++L IV F ARFSA+RR Y YRI R+ Sbjct: 64 VAHVDIPKPFRADKLRDALNAHLR-PNPVAVLAAEIVPDTFEARFSAVRRHYRYRIANRR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+H+FTTFR CQA+SP +T+D DV Sbjct: 123 SNLALDLGKVWRVPKPLDTDAMHRAAQVLIGKHNFTTFRDTECQAASPEKTLDVLDVIRD 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 183 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPEGLY 242 Query: 241 FDSVEY 246 V+Y Sbjct: 243 LMQVDY 248 >gi|85373239|ref|YP_457301.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594] gi|123005078|sp|Q2NCT7|TRUA_ERYLH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84786322|gb|ABC62504.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594] Length = 247 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/246 (47%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G+ + G QRQK+G S+Q ++E+A + + +H AGRTD+GVHAL Sbjct: 1 MTRFALTLEFDGTPFMGLQRQKHGPSVQQAVEEAARATLNQDITLHSAGRTDTGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +HFD + P L LNA+L+ I++ N I+ + +HARF+ I RSY+YRII R+ Sbjct: 61 RSHFDAETDLTPFRLMGGLNAHLR-PHPIAVTNCEIMPEDWHARFACIGRSYVYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +++ RAW +P+ LD E M+ AAQ LVG HDFTTFRS CQA P++++D +V Sbjct: 120 APLTIDRKRAWQVPQQLDHEAMQRAAQLLVGTHDFTTFRSTQCQAKDPVKSLDRLEVERD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS VG LKLVG G W ++E+AL A+DR+ G APP GLY Sbjct: 180 GDEIRVHAEARSFLHHQVRSMVGCLKLVGQGTWREEEVEEALLARDRQRLGLNAPPHGLY 239 Query: 241 FDSVEY 246 F + EY Sbjct: 240 FVAAEY 245 >gi|91974561|ref|YP_567220.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB5] gi|123749504|sp|Q13F20|TRUA_RHOPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91681017|gb|ABE37319.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB5] Length = 245 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPVLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+++ +++L+ IV F ARFSAIRR Y YRI+ R+ Sbjct: 61 VAHLDIAKPFRADRLRDALNAHVR-PYPVAVLSTEIVPDSFEARFSAIRRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALEIGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVVRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDCVDIITSARSYLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRSACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|163742263|ref|ZP_02149651.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis 2.10] gi|161384593|gb|EDQ08974.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis 2.10] Length = 257 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 166/250 (66%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIENALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+V++W P L +ALN +LK S ++I++ + V+ +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMVKDWDPFRLSEALNFHLKPS-PVAIVDCARVEDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W + LD M+ AA HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGQVWQLNHDLDAGAMQEAANHLIGQHDFTTFRSSICQAASPLKTLDELRIERV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|297182649|gb|ADI18807.1| pseudouridylate synthase [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 245 Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 115/246 (46%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ QKNG SIQ ++ AIF + E VVV GAGRTDSGVHAL Q Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGPSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ +N ++ + +++L ++ K+FHARF A +R+Y Y II RQ Sbjct: 61 VAHFDLKKKIKKKSFLPGVNQHIG-NKPVTVLKINKTSKKFHARFDAKKRTYQYTIINRQ 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PLAL+K +AW I K LD + M+ A+ L+G HDF+TFR+ C A SPI+T+++ V Sbjct: 120 SPLALQKNKAWHIRKKLDVKAMKKGAKLLLGTHDFSTFRASSCGAKSPIKTMENISVKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I ++ +RSFL Q+RS VGS+K +GDGKW D +K+ ++++R +C P AP GLY Sbjct: 180 KDKITLKFTSRSFLQQQVRSMVGSIKYLGDGKWKLDDFKKSFKSKNRLKCAPPAPACGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LTKIKY 245 >gi|146276554|ref|YP_001166713.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025] gi|166228756|sp|A4WPU4|TRUA_RHOS5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145554795|gb|ABP69408.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025] Length = 257 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 167/251 (66%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQAVLPSVQGAIEAALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L ALNA+LK ++++ + V + FHARFSAI R YL+R++ R+ Sbjct: 61 VAHCDLGKDWDPFRLAGALNAHLK-PLPVAVVAAARVGEDFHARFSAIERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP ++GR W +P LD MR AA HLVGRHDFTTFR+I CQA+SP++T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDGAAMREAAAHLVGRHDFTTFRAIGCQAASPVKTLDELTLETV 179 Query: 180 -FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N +E R+ ARSFLH Q+RS VG+L+ VG G W +++AL+A+DR CGP+ PP Sbjct: 180 EVPNGVEYRFRLRARSFLHNQVRSIVGTLERVGAGAWAPDRVKEALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|254463862|ref|ZP_05077273.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium Y4I] gi|206684770|gb|EDZ45252.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium Y4I] Length = 255 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 118/250 (47%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDLPSVQGAIEAALARLEPGEHTIAAAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++W P L +ALN +LK D ++I+ + VD +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMAKDWDPFRLSEALNYHLK-PDPVAIVGCARVDDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W + LD + M+ AA +L+G HDFTTFRS CQA SP++T+D V Sbjct: 120 APATHDAGQVWQLSHELDADAMQEAANYLIGNHDFTTFRSSICQAQSPVKTLDELTVERV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWDPADVKAALEARDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|149912589|ref|ZP_01901123.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149916040|ref|ZP_01904563.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149810114|gb|EDM69962.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149812995|gb|EDM72821.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] Length = 255 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 161/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYDGAPFAGWQRQAEQPSVQGAIEAALARLEPGPHKIAAAGRTDAGVHGLAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLV++W P L A+N +LK + + + + +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVKDWEPFKLMGAVNYHLKPAPVAVVACAQVAE-DWHARFSALERRYLFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P LE GR W +P+SLD MR A+HL+G+HDFTTFRS CQA SP++T+D ++ Sbjct: 120 PPETLEAGRVWRVPQSLDVAAMREGARHLLGKHDFTTFRSSICQAKSPVKTLDALEIEEA 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ PP Sbjct: 180 EGLGGPELRFHLSARSFLHNQVRSIVGTLERVGAGSWAPEDVKTALEAKDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLAGVGYP 250 >gi|163738320|ref|ZP_02145735.1| Pseudouridylate synthase [Phaeobacter gallaeciensis BS107] gi|161388241|gb|EDQ12595.1| Pseudouridylate synthase [Phaeobacter gallaeciensis BS107] Length = 257 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/250 (46%), Positives = 166/250 (66%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIEDALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+V++W P L +ALN +LK + ++I++ + + +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMVKDWDPFRLSEALNFHLKPA-PVAIVDCARAEDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W + LD +M+ AA HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGQVWQLNHDLDAGSMQEAANHLIGQHDFTTFRSSICQAASPLKTLDELRIERV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|99082224|ref|YP_614378.1| tRNA pseudouridine synthase A [Ruegeria sp. TM1040] gi|122984147|sp|Q1GE00|TRUA_SILST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|99038504|gb|ABF65116.1| Pseudouridylate synthase [Ruegeria sp. TM1040] Length = 259 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 116/250 (46%), Positives = 163/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W P L +ALN +LK + ++I++ ++VD ++HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDLEKNWDPFRLSEALNYHLKPA-PVAIVDAALVDDEWHARFSAVERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ++G+ W I LD M+ A L+G HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDEGQVWQIKHDLDVAAMQAGANMLLGNHDFTTFRSSICQAASPVKTLDELRVERV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|254475915|ref|ZP_05089301.1| tRNA pseudouridine synthase A [Ruegeria sp. R11] gi|214030158|gb|EEB70993.1| tRNA pseudouridine synthase A [Ruegeria sp. R11] Length = 256 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIEDALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK + ++I++ + VD +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDMAKAWDPFRLSEALNYHLKPA-PVAIVDCAQVDDDWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W + LD M+ AA HLVG+HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDAGQVWQLSHDLDVAAMQEAADHLVGQHDFTTFRSSICQAASPLKTLDELRVERV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWDPVDVKDALEACDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|254441675|ref|ZP_05055168.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307] gi|198251753|gb|EDY76068.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307] Length = 256 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 120/251 (47%), Positives = 158/251 (62%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFCGWQRQTSDPSVQGAIEAALAKLEPRGHTIGAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +ALN +LK + +SI+ V +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMDKTWDAFRLSEALNFHLKPA-PVSIVACVQVADDWHARFSALERRYLFRLVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE G+ W + + LD M+ A L+G HDFTTFRS CQA SP+RT+D D+ Sbjct: 120 APLVLEAGKVWQVSQKLDGAAMQAGADRLLGHHDFTTFRSTVCQADSPMRTLDGLDIEQV 179 Query: 181 -----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 180 ARSDGAQEFRFHVRARSFLHNQVRSFVGTLERVGAGAWTRDDVSAALNARDRTACGPVCP 239 Query: 236 PEGLYFDSVEY 246 P GLY SV Y Sbjct: 240 PHGLYLASVGY 250 >gi|86139183|ref|ZP_01057753.1| tRNA pseudouridine synthase A [Roseobacter sp. MED193] gi|85824027|gb|EAQ44232.1| tRNA pseudouridine synthase A [Roseobacter sp. MED193] Length = 258 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 161/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE+A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEEALAKLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W P L +ALN +LK + ++I++ ++VD ++HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLQKPWSPFRLSEALNFHLKPA-PVAIVDCAVVDPEWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W I LD E M+ A HL+G HDFTTFRS CQA SP +T+D + Sbjct: 120 APATHDAGQVWQINNDLDVERMQQGANHLLGNHDFTTFRSSICQAQSPQKTLDELRIERV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG WT D++ AL+A DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGADAWTPQDVKSALEACDRAACGPVCPG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLARVGYP 250 >gi|259417872|ref|ZP_05741791.1| tRNA pseudouridine synthase A [Silicibacter sp. TrichCH4B] gi|259346778|gb|EEW58592.1| tRNA pseudouridine synthase A [Silicibacter sp. TrichCH4B] Length = 278 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 121/250 (48%), Positives = 159/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 20 MPRIALKVEYHGKPFAGWQRQKDQPSVQGAIEAALAKLEPGEHTIAAAGRTDTGVHGLGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK D I+I++ + VD +HARFSAI R YL+RI+ R+ Sbjct: 80 VAHCDLQKDWDPFRLSEALNYHLK-PDPIAIVDAARVDDDWHARFSAIERQYLFRILMRR 138 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W I LD E M+ A L+G HDFTTFRS CQA+SP++T+D V Sbjct: 139 APATHDAGQVWQINHRLDVEAMQAGADMLLGNHDFTTFRSSICQAASPVKTLDELRVEQV 198 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 199 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALAAKDRAACGPVCPG 258 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 259 HGLYLARVGY 268 >gi|329849464|ref|ZP_08264310.1| tRNA pseudouridine synthase A [Asticcacaulis biprosthecum C19] gi|328841375|gb|EGF90945.1| tRNA pseudouridine synthase A [Asticcacaulis biprosthecum C19] Length = 257 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 120/246 (48%), Positives = 159/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IEY+G Y G+Q Q + ++Q S+E+AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYRCLIEYDGRPYKGFQAQGDHPTVQASLERAILGFSGEALRITAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FDL + + + A+NA+L + +S+L VD +F ARFSA R YLYRI+TR+ Sbjct: 61 VVSFDLSKAFKADTVRDAMNAFLA-REPVSVLAAEQVDDEFSARFSATGRMYLYRILTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+ GR W + K LD E M AA+ LVG HDFTTFR + CQA SP++T+D V F Sbjct: 120 APPALDMGRVWHVKKPLDAEVMAQAAKALVGTHDFTTFRHVECQAKSPVKTLDIARVKRF 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS G+L G G+W D+ +AL A+DR CG +APPEGLY Sbjct: 180 GDEIHLVFAARSFLHRQVRSMTGTLVEAGIGRWDIADVAEALAAKDRAACGQVAPPEGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTHVTY 245 >gi|114769437|ref|ZP_01447063.1| tRNA pseudouridine synthase A [alpha proteobacterium HTCC2255] gi|114550354|gb|EAU53235.1| tRNA pseudouridine synthase A [alpha proteobacterium HTCC2255] Length = 255 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 161/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ++ S+Q +IE AI + E + GAGRTD+GVHA Q Sbjct: 1 MPRYALKVEYDGKPYHGWQRQRDVPSVQQTIEIAISKIAPEKPEIQGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + W L +A+N +L+ + ISI SIV FHARFSA R Y++R+++R+ Sbjct: 61 IAHFDLNKPWDSFRLSEAINYHLR-PEPISITKCSIVADDFHARFSAKERRYVFRLLSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ++ G W I LD E M+ A++LVG+HDFTTFRS CQA SPI+++ + Sbjct: 120 APAIVDVGWVWQIQHDLDLELMQEGAKYLVGKHDFTTFRSSICQAQSPIKSLKEISIKEI 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G E ++ARSFLH Q+RSF+G+L+ VG G W + +AL A+DR +CGP+ PP Sbjct: 180 SLEHGKEFEFTIIARSFLHNQVRSFIGTLERVGSGSWDPERVHEALIAKDRSKCGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAQVSY 249 >gi|148258520|ref|YP_001243105.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. BTAi1] gi|166228680|sp|A5ESQ5|TRUA_BRASB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146410693|gb|ABQ39199.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. BTAi1] Length = 245 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q+ S+QG++E A+ G VHG+GRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFCGWQLQETLPSVQGALEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P L ALNA+L+ + +++L IV F ARFSA +R Y YRI+ R+ Sbjct: 61 VAHCDIAKDFRPDKLRDALNAHLR-PNPVAVLEAEIVSDTFEARFSARKRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE GR W +P+ LD + M AAQ L+GRHDFTTFR CQA SP +T+D DV Sbjct: 120 SNLALEVGRVWRVPQRLDSDAMHAAAQRLIGRHDFTTFRDTECQAKSPEKTLDQLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W++ DL AL A++R CG +APPEGLY Sbjct: 180 GDAVTILTSARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARNRAACGVVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|56697975|ref|YP_168346.1| tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3] gi|62901184|sp|Q5LNR0|TRUA_SILPO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56679712|gb|AAV96378.1| tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3] Length = 262 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 159/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYLGTPFAGWQRQKDLPSVQGAIETALARLEPGPHTIAAAGRTDAGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK ++I + V + +HARFSA R YL+R++ R+ Sbjct: 61 VAHCDLTRDWDPFRLSEALNYHLK-PQPVAITAAARVAEDWHARFSATERQYLFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W + LD M+ AA L+GRHDFTTFRS CQA+SP++T+D V + Sbjct: 120 APATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRSSICQAASPVKTLDELRVEAV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W D+ AL+A+DR CGP+ PP Sbjct: 180 ESFSGPEIRFHVRARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLARVGY 249 >gi|148556941|ref|YP_001264523.1| tRNA pseudouridine synthase A [Sphingomonas wittichii RW1] gi|166229840|sp|A5VDL9|TRUA_SPHWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148502131|gb|ABQ70385.1| tRNA pseudouridine synthase A [Sphingomonas wittichii RW1] Length = 254 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 160/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G + GWQRQ +G S+Q +IE+AI VTGE V+H AGRTD+ VH Sbjct: 1 MTRFRLTVEFDGRPFMGWQRQAHGPSVQQAIEEAITAVTGERAVIHAAGRTDARVHGRAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +ALNA L+ + ++IL V +HARFS + R Y+YRI+ R+ Sbjct: 61 TAHADIAKPITPFRLKEALNARLRPA-PVAILACEPVAGDWHARFSCVGRRYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + G AW + LD + M AAQ LVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTFDAGLAWQVAADLDDQAMHAAAQCLVGRHDFTTFRSAHCQAESPVKTLDRLDVRRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LIEI ARSFLH Q+RS VG L LVG G+WT+ DL AL A DR G APP+GLY Sbjct: 180 GELIEIEAAARSFLHHQVRSMVGCLALVGRGRWTAADLADALAAADRARLGLNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FMEAVY 245 >gi|159044486|ref|YP_001533280.1| tRNA pseudouridine synthase A [Dinoroseobacter shibae DFL 12] gi|189030132|sp|A8LNZ7|TRUA_DINSH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157912246|gb|ABV93679.1| pseudouridine synthase A [Dinoroseobacter shibae DFL 12] Length = 257 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 114/250 (45%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G+ + GWQRQ+ S+QG++E A+ + + + AGRTD+GVHAL Q Sbjct: 1 MPRFALKIEYDGAPFAGWQRQREQPSVQGAVEAALRGLQPDHAGIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALNA+L+ + + V + FHARFSA+ RSYL+R++ R+ Sbjct: 61 VAHVDLARDWDPFRLSEALNAHLRPAPVAVLAAAR-VGEDFHARFSALERSYLFRLLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G W + LD E MR A++L+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGLVWRVMNPLDVEAMREGAKYLIGKHDFTTFRSTMCQAASPVKTLDEITIEES 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ P Sbjct: 180 PRDAGTEFRFHLRARSFLHNQVRSIVGTLERVGAGAWDPADVKTALEARDRAACGPVCAP 239 Query: 237 EGLYFDSVEY 246 +GLY +V Y Sbjct: 240 QGLYLRAVRY 249 >gi|126737019|ref|ZP_01752754.1| tRNA pseudouridine synthase A [Roseobacter sp. SK209-2-6] gi|126721604|gb|EBA18307.1| tRNA pseudouridine synthase A [Roseobacter sp. SK209-2-6] Length = 255 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDLPSVQGAIEDALSRLEPGAHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK + ++IL+ + VD+ +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLQKDWDPFRLSEALNYHLKPA-PVAILDCAGVDEDWHARFSAIERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W I LD M+ AA HL+G HDFTTFRS CQA+SP +T+D + + Sbjct: 120 APATHDAGQVWQINHELDVAAMQEAADHLIGNHDFTTFRSSICQAASPQKTLDELRIETV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGSWEPLDVKHALEACDRSACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|85703371|ref|ZP_01034475.1| tRNA pseudouridine synthase A [Roseovarius sp. 217] gi|85672299|gb|EAQ27156.1| tRNA pseudouridine synthase A [Roseovarius sp. 217] Length = 257 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQVDHPSVQGAIEAALGRIEPGPHTIAAAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W L +ALN +LK ++I + V + +HARFSA R YL+RI++R+ Sbjct: 61 VAHCDLPRDWGTFRLSEALNYHLK-PLPVAITGCARVPEDWHARFSATERQYLFRILSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP+ L++GR W + LD + MR A HL+G HDFTTFRS CQA+SPI+T+D +++ Sbjct: 120 APVTLDQGRVWHVRPMLDIDAMRAGAAHLIGTHDFTTFRSTICQAASPIKTLDSIEISEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I ++ ARSFLH Q+RS VG+L+ VG G W + AL A+DR CGP+ PP Sbjct: 180 STPTGTEIHFQLRARSFLHNQVRSIVGTLERVGAGSWHPDQVRGALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 YGLYLAHVVY 249 >gi|40062661|gb|AAR37582.1| tRNA pseudouridine synthase A [uncultured marine bacterium 313] Length = 245 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ QKNG SIQ ++ AIF + E VVV GAGRTDSGVHAL Q Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGQSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ +N ++ + +++L ++ K+FHARF A +R+Y Y II RQ Sbjct: 61 VAHFDLKKKIKKKSFLPGINQHIG-NKPVTVLKINKTSKKFHARFDAKKRTYQYTIINRQ 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL L+K +AW I K LD M+ A+ L+G HDF+TFR+ C A SPI+T+++ + Sbjct: 120 SPLTLQKNKAWHIRKKLDVRAMKKGAKLLLGTHDFSTFRASSCGAKSPIKTMENISIKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I ++ ++RSFL Q+RS VG +K +GDGKW D +K+ +++ R EC P AP GLY Sbjct: 180 KDKITLKFISRSFLQQQVRSMVGCIKYLGDGKWKLEDFKKSFKSKCRLECAPPAPASGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LAKIKY 245 >gi|146337887|ref|YP_001202935.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. ORS278] gi|166228681|sp|A4YLC1|TRUA_BRASO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146190693|emb|CAL74697.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Bradyrhizobium sp. ORS278] Length = 245 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 123/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q+ S+QG +E A+ G VHG+GRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQETLPSVQGVLEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +E+ P L ALNA+L+ + +++L+ IV F ARFSA +R Y YRI+ R+ Sbjct: 61 VAHCDIDKEFRPDKLRDALNAHLR-PNPVAVLDAQIVPDTFEARFSARKRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE GR W +P+ LD + M +AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 SNLALEVGRVWRVPQRLDSDAMHVAAQRLIGKHDFTTFRDTECQAKSPEKTLDQLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W++ DL AL A+ R CG +APPEGLY Sbjct: 180 GDAVTIITSARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARRRAACGVVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|27383218|ref|NP_774747.1| tRNA pseudouridine synthase A [Bradyrhizobium japonicum USDA 110] gi|27356392|dbj|BAC53372.1| tRNA pseudouridine synthase I [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ +FGWQ Q S+QG++E A+ +TG + VHGAGRTD+GVHA Q Sbjct: 8 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P LNA+L+ I++L IV F ARFSA++R Y YRI+ + Sbjct: 68 VAHVDIEKQFPPGRFRDGLNAHLR-PHPIAVLEAEIVPDTFEARFSAVKRHYRYRIVNTR 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G AW +P+ LD + M AA+ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 127 ANLALDIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSPEKTLDQLDVLRD 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH+Q+RS VGSL VG+G+WT+ DL AL A++R CG +APP+GLY Sbjct: 187 GREITIITSARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLY 246 Query: 241 FDSVEY 246 V+Y Sbjct: 247 LVKVDY 252 >gi|254418055|ref|ZP_05031779.1| tRNA pseudouridine synthase A [Brevundimonas sp. BAL3] gi|196184232|gb|EDX79208.1| tRNA pseudouridine synthase A [Brevundimonas sp. BAL3] Length = 247 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 116/246 (47%), Positives = 157/246 (63%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y G+Q Q + ++QG++E AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTLEYDGTAYNGFQAQADQPTVQGAVEAAILAFSGERIRIAAAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL R+W + A+NA+L D + D +HARFSA R YLYRI+ R+ Sbjct: 61 VIHADLERDWPVDTVLNAVNAHLIKQDVCVLSAEYAPDPDWHARFSATGRGYLYRILNRR 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LE+ R W + KSLD E M AAQ LVG HDFTTFR + CQ+ SP++T+D V+ F Sbjct: 121 PQPVLERDRVWHVKKSLDAEAMHQAAQVLVGLHDFTTFRDVGCQSKSPVKTLDVARVSRF 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + ARSFLH Q+RS G+L VG G+WT+ D++ AL+A+DR CGP+AP GLY Sbjct: 181 GEEVHLVFQARSFLHRQVRSMAGTLVEVGLGRWTAHDVKAALEAKDRARCGPVAPSAGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LSGVRY 246 >gi|254454857|ref|ZP_05068294.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 238] gi|198269263|gb|EDY93533.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 238] Length = 256 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/251 (47%), Positives = 159/251 (63%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFCGWQRQTSDPSVQGAIEAALAKLEPREHKIGAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +ALN +LK + ISI+ + V +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMDKAWDAFRLSEALNFHLKPA-PISIVACAQVSDDWHARFSALERRYLFRLVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE G+ W + + LD M+ A L+G HDFTTFRS CQA SP+RT+D V Sbjct: 120 APLVLEVGKVWQVGQKLDGALMQAGADRLLGHHDFTTFRSTVCQADSPMRTLDGLKVQQV 179 Query: 181 GNL-----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 180 TRVDGAQEFQFHVRARSFLHNQVRSFVGTLERVGAGAWTPDDVTAALNARDRTACGPVCP 239 Query: 236 PEGLYFDSVEY 246 P GLY V Y Sbjct: 240 PHGLYLAGVSY 250 >gi|114763999|ref|ZP_01443240.1| tRNA pseudouridine synthase A [Pelagibaca bermudensis HTCC2601] gi|114543591|gb|EAU46605.1| tRNA pseudouridine synthase A [Roseovarius sp. HTCC2601] Length = 255 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 114/251 (45%), Positives = 158/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYDGRPFAGWQRQADQPSVQGAIEAALARLEKRDHTIAAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK + ++I + V +HARFSA R YL+R++ R+ Sbjct: 61 VAHCDMEKAWDPFRLSEALNFHLKPA-PVAIRACAAVSDDWHARFSAHERRYLFRLLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--- 177 AP LE G+ W + L E MR A HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATLEAGQVWRVMNPLSLEAMRAGAAHLIGQHDFTTFRSTMCQAASPVKTMDEIRIEQT 179 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D+ AL+A+DR CGP+ PP Sbjct: 180 DTGAGTEFRFHLRARSFLHNQVRSIVGTLERVGAGSWAPEDVRSALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y+ Sbjct: 240 DGLYLMGVGYA 250 >gi|42559808|sp|Q89BP1|TRUA_BRAJA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 245 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ +FGWQ Q S+QG++E A+ +TG + VHGAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P LNA+L+ I++L IV F ARFSA++R Y YRI+ + Sbjct: 61 VAHVDIEKQFPPGRFRDGLNAHLR-PHPIAVLEAEIVPDTFEARFSAVKRHYRYRIVNTR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G AW +P+ LD + M AA+ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSPEKTLDQLDVLRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH+Q+RS VGSL VG+G+WT+ DL AL A++R CG +APP+GLY Sbjct: 180 GREITIITSARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|89070283|ref|ZP_01157602.1| tRNA pseudouridine synthase A [Oceanicola granulosus HTCC2516] gi|89044122|gb|EAR50283.1| tRNA pseudouridine synthase A [Oceanicola granulosus HTCC2516] Length = 257 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/252 (46%), Positives = 161/252 (63%), Gaps = 6/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ +++QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYDGGPYAGWQRQDGPATVQGAIEAALARLEPGPHTIAAAGRTDAGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL + W P L +ALN +LK + I+I+ + V +HARFSA R YL+R++ R+ Sbjct: 61 VAQADLAKAWEPFRLAEALNYHLKPA-PIAIVACARVADDWHARFSANERRYLFRLVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E+G+ W + + LD M+ A LVG HDFTTFRS CQA SP++T+D V + Sbjct: 120 APLPFERGQVWKVNQPLDAAAMQAGADLLVGHHDFTTFRSSICQADSPVKTLDELTVETV 179 Query: 181 ---GNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 E R V ARSFLH Q+RSFVG+L+ VG G W + +AL A++RK CGP+AP Sbjct: 180 TRPDGYPEYRFHVRARSFLHNQVRSFVGTLERVGAGAWPPERVGEALAARERKACGPVAP 239 Query: 236 PEGLYFDSVEYS 247 P+GLY +V+Y Sbjct: 240 PQGLYLAAVKYP 251 >gi|254293237|ref|YP_003059260.1| tRNA pseudouridine synthase A [Hirschia baltica ATCC 49814] gi|254041768|gb|ACT58563.1| tRNA pseudouridine synthase A [Hirschia baltica ATCC 49814] Length = 247 Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 119/246 (48%), Positives = 158/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS Y GWQRQK S+Q +E+AI GE V VHGAGRTD+GVHA+ Q Sbjct: 1 MARFKLTIEYDGSPYVGWQRQKTHRSVQQVLEEAIPKFAGETVTVHGAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +E+ + A+N ++K + +SIL V +FHARFSA R Y+YRII R+ Sbjct: 61 VAHIDLSKEFTTDKVRDAMNHFMK-DEPVSILLAEEVSDEFHARFSAYARHYIYRIIDRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L ++ AW +D + M AAQ LVG+HDF+TFR CQA SP++T+ +V Sbjct: 120 ADLTFDRNLAWRAMSPVDADAMHEAAQCLVGKHDFSTFRDAQCQAESPVKTLSKIEVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I V A SFLH Q+RS GSL +G GK + +++ L A DR CG +APP+GLY Sbjct: 180 GDEINIYVSAPSFLHRQVRSITGSLMEIGRGKKPISWMQEILGAADRSRCGTVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LSQVDY 245 >gi|260426957|ref|ZP_05780936.1| tRNA pseudouridine synthase A [Citreicella sp. SE45] gi|260421449|gb|EEX14700.1| tRNA pseudouridine synthase A [Citreicella sp. SE45] Length = 255 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 157/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYDGGPFAGWQRQADQPSVQGAIEAALARLEPREHTIAAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK + ++I + V +HARFSA+ R Y +R++ R+ Sbjct: 61 VAHCDMAKPWDPFRLSEALNFHLKPA-PVAIRACAAVADDWHARFSAVERRYTFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP LE G+ W + LD M+ A HL+G HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATLEAGQVWRVMNPLDLGAMQEGAAHLLGLHDFTTFRSTMCQAASPVKTLDEIRIEEC 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ PP Sbjct: 180 DTGAGPEYRFHLRARSFLHNQVRSIVGTLERVGAGSWAPEDVKHALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 DGLYLTGVGYP 250 >gi|170742366|ref|YP_001771021.1| tRNA pseudouridine synthase A [Methylobacterium sp. 4-46] gi|238688005|sp|B0UP40|TRUA_METS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168196640|gb|ACA18587.1| tRNA pseudouridine synthase A [Methylobacterium sp. 4-46] Length = 250 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+GSG+ GWQRQ ++Q ++E+AI G V VH AGRTD+GVHA Q Sbjct: 1 MPRYKLVVEYDGSGFAGWQRQAADRTVQQALEEAIARFAGAPVRVHCAGRTDAGVHATHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL R+W + A NA+L+ + +++++ V F AR SA+RR Y YRI+ R+ Sbjct: 61 VVHLDLDRDWRTDTVRDASNAHLR-PEPVAVVSAERVRPDFDARHSALRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P SLD M AAQ L+GRHDF+ FR+ CQA+SP+RT+D DV Sbjct: 120 SPPALGRAYLWHVPWSLDAHAMHAAAQTLLGRHDFSAFRAAECQANSPVRTLDQLDVARI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R VG+L L G G+ + + L ++DR CGPLAP GL Sbjct: 180 GDEILVATSARSFLHHQVRGMVGTLMLAGCGRLDAAGVRAVLDSRDRTRCGPLAPAAGLT 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTGVDY 245 >gi|84503354|ref|ZP_01001423.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597] gi|84388264|gb|EAQ01215.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597] Length = 255 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 111/251 (44%), Positives = 161/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALQVEYHGAPFAGWQRQADQPSVQGAIEAALARLEPGPHTIAAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL ++W P L +ALN +L+ + ++I + V + +HARFSA+ R Y++R++ R+ Sbjct: 61 VAQCDLEKDWDPFRLSEALNHHLRPA-PVAIRACARVAEDWHARFSALERRYMFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W +P LD E +R A HLVG HDFTTFRS+ CQA SP++T+D + Sbjct: 120 APATHDAGLVWQVPHRLDPEAIRAGAAHLVGHHDFTTFRSVICQAKSPVKTLDEIRIEEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + + ARSFLH Q+RS VG+L+ VG G+W + + +AL+A+DR CGP+ PP Sbjct: 180 DGFSGPELRFHLRARSFLHNQVRSIVGTLERVGAGRWPPSRVAEALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLVGVGYP 250 >gi|294085062|ref|YP_003551822.1| Pseudouridylate synthase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664637|gb|ADE39738.1| Pseudouridylate synthase [Candidatus Puniceispirillum marinum IMCC1322] Length = 254 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/244 (50%), Positives = 156/244 (63%), Gaps = 1/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+G+ + GWQRQ NG ++Q +E+A F TGE + V GAGRTDSGVHAL QVA Sbjct: 4 RIFITIEYDGAPFVGWQRQDNGITVQQELEEAAFAFTGEKINVQGAGRTDSGVHALGQVA 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H D+ ++ P + +ALNA+L + IS+L+ V HARFSAI R YLYRI+ R+ P Sbjct: 64 HLDVPEKFAPNRVMEALNAHLSHT-AISVLDAYEVPDDAHARFSAIGRRYLYRILPRRQP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AL+ GR W + LD + M+ A L+GRHDF +FR+ CQA S IRT+D V Sbjct: 123 PALDAGRVWHHKQPLDADAMQAGADMLIGRHDFNSFRAAQCQAESSIRTLDILQVEQVSA 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + V ARSFLH Q+R+ G+L LVG GKW D++ AL A DR GP APP GLY Sbjct: 183 EIHLHVEARSFLHHQVRNIAGTLALVGTGKWQPDDVKAALAAADRSAAGPTAPPHGLYLT 242 Query: 243 SVEY 246 V Y Sbjct: 243 DVFY 246 >gi|310816231|ref|YP_003964195.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare Y25] gi|308754966|gb|ADO42895.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare Y25] Length = 255 Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 158/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ S+QG+IE A+ + + AGRTD+GVH Q Sbjct: 1 MPRYALLVEYDGRPFSGWQRQSELPSVQGAIEAALAKLEPRDHTIAAAGRTDTGVHGTGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++W P L +ALN +L+ + ++IL + V +HARFSA R Y++R+++R+ Sbjct: 61 VAHCDMDKDWDPFRLSEALNHHLRPA-PVAILRAARVADDWHARFSAYERRYIFRLLSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +E G+ W + +LD + MR A HL+G HDFTTFRS CQA SP++TID + Sbjct: 120 APLTVENGQFWRVGHALDADLMRAGAAHLIGLHDFTTFRSSICQAKSPVKTIDEISITEI 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W + + L A+DR CGP+ PP Sbjct: 180 PRHDGTEFRFFLRARSFLHNQVRSIVGTLERVGAGAWPPEKVAEVLAARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY VEY Sbjct: 240 QGLYLAGVEYP 250 >gi|170749553|ref|YP_001755813.1| tRNA pseudouridine synthase A [Methylobacterium radiotolerans JCM 2831] gi|238688894|sp|B1M6N9|TRUA_METRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170656075|gb|ACB25130.1| tRNA pseudouridine synthase A [Methylobacterium radiotolerans JCM 2831] Length = 253 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 115/250 (46%), Positives = 160/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+GS + GWQRQ + ++QG+IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGSPFCGWQRQADDPTVQGAIEAAVTRFSGENARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ V F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAETVPDSFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 +P AL + W +P LD + M AAQ LVGRHDF+ FR+ CQA+SPIRT++ DV Sbjct: 120 SPAALTRAHVWHVPWPLDADLMHDAAQRLVGRHDFSAFRAAECQANSPIRTLEQLDVARA 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I + ARSFLH Q+R+ VG+L L G + + D+ + L + D+ CGPLAP Sbjct: 180 PMALHDEIVVATAARSFLHHQVRAMVGTLMLAGCRRLAADDVAEILASGDKSRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 AGLTFVGVDY 249 >gi|126731534|ref|ZP_01747340.1| tRNA pseudouridine synthase A [Sagittula stellata E-37] gi|126708070|gb|EBA07130.1| tRNA pseudouridine synthase A [Sagittula stellata E-37] Length = 249 Score = 231 bits (590), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 113/244 (46%), Positives = 156/244 (63%), Gaps = 5/244 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 +EY+G + GWQRQ S+Q +IE A+ + + GAGRTD+GVHA QVA D+ Sbjct: 1 MEYDGRPFSGWQRQAAQPSVQQAIEDALARLEPGPFTIAGAGRTDAGVHARGQVAQCDMA 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 ++W P L +ALN +LK + ++I + V +HARFSA+ R YL+RI+ R+AP LE+ Sbjct: 61 KDWDPFRLSEALNFHLKPA-PVAIRACARVADDWHARFSAVERRYLFRILMRRAPATLEE 119 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF----GNL 183 G+ W + LD MR A HLVGRHDFTTFRS+ CQA SP++T+D ++ + G Sbjct: 120 GQVWRVMHPLDVTAMREGAAHLVGRHDFTTFRSVMCQAKSPVKTLDSLEIKAVDGPAGPE 179 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + ARSFLH Q+RSFVG+L+ VG G W + AL+A+DR CGP+ PP+GLY Sbjct: 180 VWFSLRARSFLHNQVRSFVGTLERVGAGAWAPDRVGAALEARDRAACGPVCPPQGLYLTG 239 Query: 244 VEYS 247 V Y Sbjct: 240 VGYP 243 >gi|306840229|ref|ZP_07473004.1| tRNA pseudouridine synthase A [Brucella sp. BO2] gi|306289834|gb|EFM61013.1| tRNA pseudouridine synthase A [Brucella sp. BO2] Length = 207 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 112/202 (55%), Positives = 143/202 (70%), Gaps = 1/202 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARF 105 AGRTD+GVHA QVAH DL ++W + A+NA+L ++D ISILN+ F ARF Sbjct: 3 AAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARF 62 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R YLYRI R+APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ CQA Sbjct: 63 SARARHYLYRIHNRRAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQA 122 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 SP++T+D DV G++IE+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+ Sbjct: 123 KSPVKTLDRLDVTRNGDMIEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAR 182 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DRK CG +APP GLY V+Y+ Sbjct: 183 DRKACGQVAPPYGLYLVGVDYA 204 >gi|189023111|ref|YP_001932852.1| tRNA pseudouridine synthase A [Brucella abortus S19] gi|189021685|gb|ACD74406.1| tRNA pseudouridine synthase [Brucella abortus S19] Length = 207 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/202 (54%), Positives = 143/202 (70%), Gaps = 1/202 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARF 105 AGRTD+GVHA QVAH DL ++W + A+NA+L ++D ISILN+ F ARF Sbjct: 3 AAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARF 62 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R YLYRI R+APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ CQA Sbjct: 63 SARARHYLYRIHNRRAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQA 122 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+ Sbjct: 123 KSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAR 182 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DRK CG +APP GLY V+Y+ Sbjct: 183 DRKACGQVAPPYGLYLVGVDYA 204 >gi|255264700|ref|ZP_05344042.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62] gi|255107035|gb|EET49709.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62] Length = 257 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 163/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQKDQPSVQGAIEAALAKLEPRAHTIAAAGRTDAGVHGLAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W L +ALN +LK + ++I++ +IV+ +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLERGWQAFRLSEALNYHLKPA-PVAIVDCAIVEGDWHARFSAVERRYLFRLVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + +GR W + LD M+ AA HLVG HDFTTFRS CQ++SP++T+D D++ Sbjct: 120 ASMTHLRGRVWHVQNPLDVAAMQAAAAHLVGLHDFTTFRSSICQSASPVKTLDRLDISEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G V ARSFLH Q+RSFVG+L+ VG G W + AL+A +R CGP++PP Sbjct: 180 ETNAGVEYRFDVRARSFLHNQVRSFVGTLERVGAGSWDPDRVRVALEACERSTCGPVSPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLAGVGY 249 >gi|209965580|ref|YP_002298495.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW] gi|238057735|sp|B6IPI0|TRUA_RHOCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209959046|gb|ACI99682.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW] Length = 245 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 121/246 (49%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQ NG S+Q ++E+AI+ T E V V AGRTD+GVHAL Sbjct: 1 MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRTDAGVHALAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL RE + ALN +LK +++L + V FHARFS + R+YLYRI+ R+ Sbjct: 61 VASVDLAREATADKVQAALNFHLK-PHPVAVLRVEPVAPDFHARFSCLGRAYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE GR W + LD E M AAQ LVG+HDF++FR+ CQA SP++T+ V Sbjct: 120 APAALEAGRVWHVQGGLDAEAMHEAAQRLVGQHDFSSFRASLCQAKSPVKTLSDLSVARV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+R+ VG+LKLVG+G+WT+ D+ +AL A++R GP AP GLY Sbjct: 180 GEEVRIVARARSFLHHQVRNMVGTLKLVGEGRWTADDVSRALAARNRSAAGPTAPAAGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTEAWY 245 >gi|306838494|ref|ZP_07471334.1| tRNA pseudouridine synthase A [Brucella sp. NF 2653] gi|306406426|gb|EFM62665.1| tRNA pseudouridine synthase A [Brucella sp. NF 2653] Length = 207 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 111/202 (54%), Positives = 142/202 (70%), Gaps = 1/202 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARF 105 AGRTD+GVHA QVAH DL ++W + A+NA+L ++D ISILN+ F ARF Sbjct: 3 AAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARF 62 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R YLYRI R+APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ CQA Sbjct: 63 SARARHYLYRIHNRRAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQA 122 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+ Sbjct: 123 KSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAR 182 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DRK CG +APP GLY V+Y+ Sbjct: 183 DRKACGQVAPPYGLYLVGVDYA 204 >gi|304320576|ref|YP_003854219.1| tRNA pseudouridine synthase A [Parvularcula bermudensis HTCC2503] gi|303299478|gb|ADM09077.1| tRNA pseudouridine synthase A [Parvularcula bermudensis HTCC2503] Length = 253 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 153/245 (62%), Gaps = 1/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +E++G+ + GWQRQ NG S+QG+IE+A +T +GAGRTDSGVHA+ A Sbjct: 6 RYRIEVEFDGTPFVGWQRQDNGPSVQGAIEEAAARLTQAPGACYGAGRTDSGVHAIAMTA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H DL + P + LNAYL+ + +SIL V FHARF RR YLYR++ R++P Sbjct: 66 HLDLAKALPPDNVRDGLNAYLRPA-PVSILLAQPVSPDFHARFQCHRRHYLYRLLDRRSP 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + R W + LD + M AA L+G+HDFTT+RS HCQA SP++T+ F+V G Sbjct: 125 PVLMRDRVWHVIAPLDVDAMAKAAHPLIGQHDFTTYRSAHCQAESPLKTLSQFEVTRVGQ 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + A SFLH Q+RS VG+L VG G+ + ALQA DR+ CGP+AP GLYF Sbjct: 185 EVHCALSAPSFLHNQVRSLVGTLVQVGLGRAALSQPYDALQACDRRACGPVAPAHGLYFV 244 Query: 243 SVEYS 247 +Y Sbjct: 245 KADYP 249 >gi|330813516|ref|YP_004357755.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter sp. IMCC9063] gi|327486611|gb|AEA81016.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter sp. IMCC9063] Length = 245 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 117/246 (47%), Positives = 160/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+EY+G+ + GWQRQ NG S+Q ++EK++ +T E + +HG+GRTD+GVHA Q Sbjct: 1 MRRYKCIVEYDGTSFVGWQRQTNGYSVQEAVEKSLKSITQEKIRIHGSGRTDTGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + ALN YLK + ISIL+ IVD F AR SAI R+Y Y II R Sbjct: 61 VIHFDSNTNLDEYTITSALNHYLK-KELISILSTEIVDDNFDARRSAILRTYEYLIINRA 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLA++K +AW I K L+ + + A + G HDFTTFR+ C+ASSPIRTI++ + + Sbjct: 120 APLAIDKNKAWHISKPLNEKLIFAAIKIFEGTHDFTTFRAASCEASSPIRTIEYTEAFAR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I ++SFL Q+RS +G+LKL+G+ KW+ DL+ AL ++DR C LAP GLY Sbjct: 180 NEEILITFQSKSFLQHQVRSMIGALKLIGEEKWSIRDLQSALDSKDRSRCAALAPACGLY 239 Query: 241 FDSVEY 246 V + Sbjct: 240 LLKVSF 245 >gi|119383286|ref|YP_914342.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222] gi|166228744|sp|A1AZF2|TRUA_PARDP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119373053|gb|ABL68646.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222] Length = 261 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 116/253 (45%), Positives = 155/253 (61%), Gaps = 8/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGR---TDSGVHA 57 M R+ ++IEY+GS + GWQ Q S+Q +IE A+ + TD+GVHA Sbjct: 1 MPRFALLIEYDGSPFAGWQAQAERPSVQSTIEAALGRLDPGFAAGARIAAAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL R+W P L +ALN +LK + ++IL + V FHARFSA R YL+R++ Sbjct: 61 TGQVAHADLARDWDPFRLSEALNWHLKPA-PVAILAAARVADDFHARFSAHERRYLFRLV 119 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+APL ++GRAW +P LD MR A HL+GRHDFTTFRS CQA+SP++T+D + Sbjct: 120 ARRAPLTHDRGRAWQVPHRLDLAAMRAGAAHLLGRHDFTTFRSTMCQANSPVKTLDELTI 179 Query: 178 NSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G + ARSFLH Q+RS VG+L+ VG G W + +AL A DR CGP+ Sbjct: 180 DEAEIPQGREYRFFLRARSFLHNQVRSIVGTLERVGAGAWPPGRVAEALAACDRAACGPV 239 Query: 234 APPEGLYFDSVEY 246 PP+GLY V Y Sbjct: 240 CPPQGLYLTGVGY 252 >gi|302384321|ref|YP_003820144.1| tRNA pseudouridine synthase A [Brevundimonas subvibrioides ATCC 15264] gi|302194949|gb|ADL02521.1| tRNA pseudouridine synthase A [Brevundimonas subvibrioides ATCC 15264] Length = 247 Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 109/246 (44%), Positives = 155/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y G+Q Q ++QG +E A+ G+ V + AGRTDSGVHA Q Sbjct: 1 MPRYRLTLEYDGRPYAGFQAQDGLPTVQGVVETAVTAFCGQTVRIAAAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W + ALNA++ + + +++L V +HARFSA R YLYRI+ R Sbjct: 61 VAHVDLDKAWPASTVMNALNAHM-VREGVAVLACEAVPDDWHARFSATGRRYLYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ALE+G+ W + + LD M+ A HL+G HDFTTFR + CQ+ SP +T+D V++ Sbjct: 120 GRPALERGKVWHVRRPLDVAAMQAGADHLIGHHDFTTFRDLACQSKSPEKTLDVARVSAV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + ARSFLH Q+RS G+L VG G+W+ D++ AL+A+DR CGP++P +GLY Sbjct: 180 GEEVHLVFEARSFLHRQVRSMTGTLVEVGLGRWSPDDVKTALEARDRTACGPVSPSDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVAY 245 >gi|306846234|ref|ZP_07478796.1| tRNA pseudouridine synthase A [Brucella sp. BO1] gi|306273485|gb|EFM55346.1| tRNA pseudouridine synthase A [Brucella sp. BO1] Length = 207 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 110/202 (54%), Positives = 142/202 (70%), Gaps = 1/202 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARF 105 AGRTD+GVHA QVAH DL ++W + A+NA+L +++ ISILN+ F ARF Sbjct: 3 AAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMAEERISILNVEKTTDTFDARF 62 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R YLYRI R+APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ CQA Sbjct: 63 SARARHYLYRIHNRRAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQA 122 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+ Sbjct: 123 KSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAR 182 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DRK CG +APP GLY V+Y+ Sbjct: 183 DRKACGQVAPPYGLYLIGVDYA 204 >gi|73667044|ref|YP_303060.1| tRNA pseudouridine synthase A [Ehrlichia canis str. Jake] gi|123773369|sp|Q3YS43|TRUA_EHRCJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72394185|gb|AAZ68462.1| tRNA pseudouridine synthase [Ehrlichia canis str. Jake] Length = 245 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 159/246 (64%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQRQK+ +SIQ +E+AIF + E V + AGRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSNFIGWQRQKHLSNSIQEILEEAIFKFSRESVTTYVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ ++ A+N +L I +IS+LN+ D +FHARFSA +R YLY+II R Sbjct: 61 VAHFDLTADFDAYVVRNAINYHL-IPHSISVLNVEKTDDEFHARFSAKKRHYLYKIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL ++ RAWL+ LD E M A +++ G HDF++FR+ HCQ+ SP++T+D + Sbjct: 120 SPLTIDYNRAWLVRNPLDVEKMMRAVEYIKGNHDFSSFRARHCQSKSPVKTMDDLKIIHS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I A SFLH Q+R VG+L G + + L+A+DR G APP GLY Sbjct: 180 DQCIDIYFSAISFLHNQVRIIVGTLVECGKNSFPPEYTKDILEAKDRSYAGMTAPPYGLY 239 Query: 241 FDSVEY 246 F V+Y Sbjct: 240 FVKVDY 245 >gi|158422420|ref|YP_001523712.1| tRNA pseudouridine synthase A [Azorhizobium caulinodans ORS 571] gi|172048047|sp|A8IQL3|TRUA_AZOC5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|158329309|dbj|BAF86794.1| tRNA pseudouridine synthase [Azorhizobium caulinodans ORS 571] Length = 258 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 120/246 (48%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q ++QG + A+ +GE V GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFAGWQIQAELPTVQGVLAAAVKGFSGEEAHVAGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH L R+W P + A+ A+L+ + + D F ARFSA++R YLYRI+ R+ Sbjct: 61 VAHIHLARDWRPDQVRDAMTAHLRPHPVAVVAVERVAD-DFDARFSAVKRHYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LAL++ RAW +P+ LD M +AAQ L+G+HDFTTFR+ CQA+SP +T+D DV Sbjct: 120 PDLALDRDRAWRVPQKLDASAMHVAAQRLLGKHDFTTFRAAECQAASPEKTLDQLDVMRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VGSL VG+G+W++ DL AL A+DR+ CGP+AP GLY Sbjct: 180 GDDIRIVTSARSFLHHQVRSMVGSLIRVGEGRWSADDLADALAARDRRRCGPMAPACGLY 239 Query: 241 FDSVEY 246 +V Y Sbjct: 240 LAAVSY 245 >gi|329890848|ref|ZP_08269191.1| tRNA pseudouridine synthase A [Brevundimonas diminuta ATCC 11568] gi|328846149|gb|EGF95713.1| tRNA pseudouridine synthase A [Brevundimonas diminuta ATCC 11568] Length = 249 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 116/246 (47%), Positives = 157/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +EY+GS Y G+Q Q ++QG+IE AI +G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRFTVEYDGSAYNGFQAQLGQPTVQGAIETAITAFSGQAVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H DL R+W + ALNA+L + + +++L+ + V +HARF+A R YLYRI+ R Sbjct: 61 TCHVDLERDWPAQTVMNALNAHL-VKEAVAVLDCTPVSDDWHARFTANGRKYLYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL++GR W + K LD E M AAQ L+G HDFTTFR CQ++SPI+T+D V+ Sbjct: 120 GRPALDRGRVWHVRKPLDAEAMHAAAQALIGLHDFTTFRDAACQSASPIKTLDVARVSRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + ARSFLH Q+RS GS+ VG G+W DL AL+A+DR CGP+AP +GLY Sbjct: 180 GEEVHLVFEARSFLHRQVRSMAGSIAEVGLGRWRPADLADALEARDRARCGPVAPSDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVTY 245 >gi|94495734|ref|ZP_01302314.1| tRNA pseudouridine synthase A [Sphingomonas sp. SKA58] gi|94425122|gb|EAT10143.1| tRNA pseudouridine synthase A [Sphingomonas sp. SKA58] Length = 246 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 160/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q +IE AI VTGE V+H AGRTD+GVH L Sbjct: 1 MPRFAFTVEFDGRPFMGWQRQAHGPSVQQTIEDAIAAVTGEAAVIHAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +A+NA ++ + ++IL V +HARFS RSY+YRI R+ Sbjct: 61 RAHADIAKNIAPFRLMEAINARMRPA-PVAILACETVADDWHARFSCTGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + G W + + LD + M+ AAQHLVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTFDAGLVWRVVQPLDADAMQAAAQHLVGRHDFTTFRSAHCQAHSPLKTLDRLDVERQ 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VG L +VG G WT+ DL AL A+DR G APP+GLY Sbjct: 180 GDRIAIHAAARSFLHHQVRSMVGCLAMVGMGHWTANDLRDALAARDRAALGLNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVRATY 245 >gi|57239154|ref|YP_180290.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|58579105|ref|YP_197317.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|62901163|sp|Q5HBA4|TRUA_EHRRW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57161233|emb|CAH58149.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|58417731|emb|CAI26935.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] Length = 246 Score = 224 bits (571), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 111/247 (44%), Positives = 164/247 (66%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY ++IEY+GS + GWQ+Q N +SIQ +EKAIF + + V+V+GAGRTD+GVHAL Q Sbjct: 1 MRYKIVIEYDGSDFIGWQKQNHNSNSIQEILEKAIFKFSKQHVIVYGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ I+ A+N +L IS I+++++ D FHARFSA RR YLY+I+ R Sbjct: 61 VAHFDLTTDFETYIVRNAINYHL-ISHAIAVVHVEKTDTDFHARFSAKRRYYLYKIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL +++ RAWL+ L+ ENM A ++ G H+F++FR+ CQ+ SPI+T+D+ + Sbjct: 120 SPLTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPIKTVDNLSITYN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I + A SFLH Q+R VG+L G G + ++ ++A +R G AP GLY Sbjct: 180 HPYIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY 239 Query: 241 FDSVEYS 247 F V+YS Sbjct: 240 FVKVDYS 246 >gi|58617163|ref|YP_196362.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Gardel] gi|62901148|sp|Q5FGS1|TRUA_EHRRG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58416775|emb|CAI27888.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Gardel] Length = 246 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 110/247 (44%), Positives = 163/247 (65%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY ++IEY+GS + GWQ+Q N +SIQ +EKAIF + + V V+GAGRTD+GVHAL Q Sbjct: 1 MRYKIVIEYDGSNFIGWQKQNHNSNSIQEILEKAIFKFSKQHVTVYGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ I+ A+N +L IS I+++++ D FHARFSA RR YLY+I+ R Sbjct: 61 VAHFDLTTDFETYIVRNAINYHL-ISHAIAVVHVEKTDTDFHARFSAKRRYYLYKIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL +++ RAWL+ L+ ENM A ++ G H+F++FR+ CQ+ SP++T+D+ + Sbjct: 120 SPLTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPVKTVDNLSITYN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I + A SFLH Q+R VG+L G G + ++ ++A +R G AP GLY Sbjct: 180 HPYIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY 239 Query: 241 FDSVEYS 247 F V+YS Sbjct: 240 FVKVDYS 246 >gi|188580854|ref|YP_001924299.1| tRNA pseudouridine synthase A [Methylobacterium populi BJ001] gi|238692887|sp|B1ZGA6|TRUA_METPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|179344352|gb|ACB79764.1| tRNA pseudouridine synthase A [Methylobacterium populi BJ001] Length = 252 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/250 (44%), Positives = 158/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGGPFCGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W + ALNA+L+ I+I++ +V F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLARDWRTDTVRDALNAHLR-PQPIAIVSAEVVTHDFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 +P AL + W +P LD + M AAQ L+GRHDF+ FR+ CQA+SP+RT++ DV Sbjct: 120 SPAALTRAHVWHVPWPLDADLMHAAAQRLLGRHDFSAFRAAECQAASPVRTLEQLDVTRQ 179 Query: 179 SFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G EI + ARSFLH Q+R+ G+L L G + ++ D+ + L + + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCRRLSADDVAEILATKAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|58584685|ref|YP_198258.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419001|gb|AAW71016.1| Pseudouridylate synthase (tRNA psi55) [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 249 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 117/246 (47%), Positives = 156/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+Q++ +SIQ +IE AIF +GE V +H GRTD+GVHAL Q Sbjct: 5 VRYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGEKVTLHCGGRTDAGVHALGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ R++ + A+N +LK S I +LN VD FH+RFSA +R Y YRII R Sbjct: 65 VAHFDMERKFELYKIRNAINYHLK-SIPIVVLNAETVDNTFHSRFSAKKRYYEYRIINRY 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G AW + LD MR AA++L+G+H+ +FRS CQA++PIRTID D+ Sbjct: 124 APAALEAGYAWQVFNPLDVNIMREAAKYLLGKHNLLSFRSKDCQATNPIRTIDDIDIVQN 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I++ A SFLH Q+R VG+L G + + L R G APP GLY Sbjct: 184 GSHIYIKISAISFLHNQVRIIVGTLVEFGKSRTNPQKMLNILNQCKRNAAGVTAPPFGLY 243 Query: 241 FDSVEY 246 ++Y Sbjct: 244 LAKIDY 249 >gi|218529891|ref|YP_002420707.1| tRNA pseudouridine synthase A [Methylobacterium chloromethanicum CM4] gi|254789640|sp|B7KVW3|TRUA_METC4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218522194|gb|ACK82779.1| tRNA pseudouridine synthase A [Methylobacterium chloromethanicum CM4] Length = 250 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/250 (44%), Positives = 158/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ +SIL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVSILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ DV Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRE 179 Query: 179 SFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G EI + ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|254560755|ref|YP_003067850.1| tRNA pseudouridine synthase A [Methylobacterium extorquens DM4] gi|254268033|emb|CAX23904.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens DM4] Length = 250 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 111/251 (44%), Positives = 159/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ DV Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRV 179 Query: 179 SFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G EI + ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCNRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEYS 247 GL F V+Y+ Sbjct: 240 CGLTFVGVDYA 250 >gi|126725547|ref|ZP_01741389.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2150] gi|126704751|gb|EBA03842.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2150] Length = 265 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 110/251 (43%), Positives = 155/251 (61%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ ++QG+IE AI + + AGRTD+GVHA+ Q Sbjct: 1 MPRYALKIEYHGAPFAGWQRQPELQTVQGAIEAAIRKLEAGNAGITAAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +A+N +LK ++I+ + VD FHARF A+ R YL+ ++ R+ Sbjct: 61 VAHVDMAKSWDLFRLTEAINHHLK-PLPVAIVACAQVDDDFHARFGALERQYLFSVVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++G W + + LD M+ A HL+GRHDFTTFRS CQA SP+RT+D + Sbjct: 120 SLAVHDQGLVWQVRQPLDLARMKEGAAHLLGRHDFTTFRSTKCQADSPVRTLDELSIREI 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G E + ARSFLH Q+RSFVG+L+ VG G ++ + L+A DR CGP+APP Sbjct: 180 ARPVGQEFEFTIRARSFLHNQVRSFVGTLEPVGAGWVHPNEVGEMLRAADRTACGPVAPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLKHVVYP 250 >gi|15604687|ref|NP_221205.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. Madrid E] gi|3861382|emb|CAA15281.1| PSEUDOURIDYLATE SYNTHASE I (truA) [Rickettsia prowazekii] Length = 253 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 155/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ + E V + G+GRTD+GVHA+ Q Sbjct: 9 MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + KA+N +++ D + + N +V FHARFSAI R Y+YRII R Sbjct: 69 VAHFDLSKYLEPYKIIKAINYFVRPYD-VGVWNCELVSNNFHARFSAISRHYIYRIINRT 127 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 128 YPSVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L A+DRK GP AP GLY Sbjct: 188 YEEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY 247 Query: 241 FDSVEY 246 F EY Sbjct: 248 FIKAEY 253 >gi|24212681|sp|Q9ZCA3|TRUA_RICPR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|292572520|gb|ADE30435.1| tRNA pseudouridine synthase A [Rickettsia prowazekii Rp22] Length = 245 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 155/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ + E V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + KA+N +++ D + + N +V FHARFSAI R Y+YRII R Sbjct: 61 VAHFDLSKYLEPYKIIKAINYFVRPYD-VGVWNCELVSNNFHARFSAISRHYIYRIINRT 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L A+DRK GP AP GLY Sbjct: 180 YEEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FIKAEY 245 >gi|330993399|ref|ZP_08317334.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1] gi|329759429|gb|EGG75938.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1] Length = 275 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 119/255 (46%), Positives = 156/255 (61%), Gaps = 12/255 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHA 57 + R+ +++EY+G G+ GWQRQK SIQG +E A L G V AGRTD+GVHA Sbjct: 19 VCRWAVLMEYDGRGFVGWQRQKTTGLLSIQGLLEDAATRLTNGHDVRSITAGRTDAGVHA 78 Query: 58 LRQVAHFDLVREWVPVILCKA-----LNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 QVAH D + V L A LN Y+K + ++ ++ Q++ARFSAI R+Y Sbjct: 79 SGQVAHLDFPAD---VTLSSATVRDGLNFYMKPHPVVVLMARPVL-PQWNARFSAISRAY 134 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YRI+ R A ALE G+ W + LD + MR AA HL+GRHDFT+FR+ CQA SP+RT+ Sbjct: 135 RYRILNRAARPALEDGQVWHVRAPLDVDGMRQAAAHLLGRHDFTSFRATACQARSPVRTL 194 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D DV G + I ARSFLH Q+R+ G+LKLVG+G+W + AL A DR+ GP Sbjct: 195 DRLDVKREGEYVVIEAAARSFLHHQVRNMAGTLKLVGEGRWEPAQVAHALAACDRRAAGP 254 Query: 233 LAPPEGLYFDSVEYS 247 APPEGL V Y+ Sbjct: 255 TAPPEGLCLTGVGYA 269 >gi|163747262|ref|ZP_02154617.1| tRNA pseudouridine synthase A [Oceanibulbus indolifex HEL-45] gi|161379537|gb|EDQ03951.1| tRNA pseudouridine synthase A [Oceanibulbus indolifex HEL-45] Length = 257 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 118/250 (47%), Positives = 157/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + ++QG IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKIEYHGAPFNGWQRQVDLPTVQGFIEAALARLEPGAHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK I+I + + + FHARFSA+ R Y + I++R+ Sbjct: 61 VAHCDMARDWSPFRLGEALNYHLK-PQPIAITDCVLAPEDFHARFSALERRYHFCILSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--- 177 AP + G W + LD E M+ AA LVG+HDFTTFRS CQA SP++T+D DV Sbjct: 120 APAVHQAGLVWQVKHRLDVEAMQAAADLLVGKHDFTTFRSTICQAVSPVKTLDRLDVREV 179 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G V ARSFLH Q+RSFVG+L+ VG G W+ D+ AL A+DR CGP+ PP Sbjct: 180 ETATGTEYHFDVRARSFLHNQVRSFVGTLERVGAGSWSVADMGAALAAKDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAHVSY 249 >gi|260576677|ref|ZP_05844664.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2] gi|259021162|gb|EEW24471.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2] Length = 257 Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 117/252 (46%), Positives = 162/252 (64%), Gaps = 6/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IEY+G+ + GWQRQ G S+Q ++E A+ + V AGRTD+GVHA Sbjct: 1 MPRYALKIEYDGTPFQGWQRQAPGQPSVQAALEAALARLQPGEHTVAAAGRTDAGVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL REW L A+NA+L+ D +++L ++ V FHARFSA R YL+R++TR Sbjct: 61 QVAHCDLDREWDTFRLAGAINAWLR-PDPVAVLAVARVADDFHARFSARERRYLFRLVTR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP+ ++GR W +P+ LD MR A HL+G+HDFTTFR+ CQA+SP++T+D + + Sbjct: 120 RAPVTHDRGRVWQLPQPLDAGLMRQGAAHLIGKHDFTTFRAALCQAASPVKTLDEIAIET 179 Query: 180 F----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G I + ARSFLH Q+RS +G+L VG G W + +AL A+DR CGP+ P Sbjct: 180 RDYPEGQEIRFTLRARSFLHNQVRSIIGTLAQVGAGHWPPERVAEALAARDRAACGPVCP 239 Query: 236 PEGLYFDSVEYS 247 P+GLY V Y Sbjct: 240 PQGLYLAGVGYP 251 >gi|240138195|ref|YP_002962667.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens AM1] gi|240008164|gb|ACS39390.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens AM1] Length = 250 Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 111/250 (44%), Positives = 158/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAEVVTQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ DV Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRE 179 Query: 179 SFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G EI + ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|220924613|ref|YP_002499915.1| tRNA pseudouridine synthase A [Methylobacterium nodulans ORS 2060] gi|254789641|sp|B8IFQ2|TRUA_METNO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219949220|gb|ACL59612.1| tRNA pseudouridine synthase A [Methylobacterium nodulans ORS 2060] Length = 254 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ ++Q ++E+AI V VH AGRTD+GVHA Q Sbjct: 1 MPRYKLVVEYDGTAFAGWQRQAADRTVQQALEEAIERFVNRPVRVHCAGRTDAGVHASHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL REW + A NA+L+ + +S+L+ + V F AR SA++R Y YRI+ R+ Sbjct: 61 VVHLDLDREWRTDTVRDATNAHLR-PEPVSVLSAARVGPDFDARHSALKRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL +G W +P +LD M AAQ L+GRHDF+ FR+ CQASSP+RT+D DV Sbjct: 120 SPPALARGYVWHVPWALDAAAMHAAAQTLLGRHDFSAFRAAECQASSPLRTLDQLDVERR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R VG+L L G G+ + + L ++DR CGPLAP GL Sbjct: 180 GDEILVATSARSFLHHQVRGMVGTLMLAGSGRLDTAGVRAVLDSRDRARCGPLAPAAGLT 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTGVDY 245 >gi|68171651|ref|ZP_00545015.1| tRNA pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa] gi|88658037|ref|YP_507432.1| tRNA pseudouridine synthase A [Ehrlichia chaffeensis str. Arkansas] gi|123750061|sp|Q2GGK1|TRUA_EHRCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|67998925|gb|EAM85612.1| tRNA pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa] gi|88599494|gb|ABD44963.1| tRNA pseudouridine synthase A [Ehrlichia chaffeensis str. Arkansas] Length = 245 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 157/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+QK+ S SIQ +E AI + + V+ AGRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSNFIGWQKQKHSSNSIQEILENAILKFSQQHTTVYVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ A+N +L I I+IL++ D +FHARFSA +R YLY+II R Sbjct: 61 VAHFDLTTNLDTYVVRNAINYHL-IPHAIAILSVEKTDDKFHARFSAKKRHYLYKIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL ++ RAWLI L+ ENM A +++ G HDF++FR+ HCQ+ +PI+TID + Sbjct: 120 SPLTIDYNRAWLIHNPLNIENMIQAIEYIKGNHDFSSFRARHCQSKNPIKTIDDLKIIHN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A SFLH Q+R VG+L G ++ ++ L+A++R G APP GLY Sbjct: 180 NQSINIHISAISFLHHQVRIIVGTLVECGKNNFSPEHIKNILKAKNRSYAGMTAPPYGLY 239 Query: 241 FDSVEY 246 F V+Y Sbjct: 240 FVKVDY 245 >gi|163851061|ref|YP_001639104.1| tRNA pseudouridine synthase A [Methylobacterium extorquens PA1] gi|238687375|sp|A9W377|TRUA_METEP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163662666|gb|ABY30033.1| tRNA pseudouridine synthase A [Methylobacterium extorquens PA1] Length = 250 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 111/250 (44%), Positives = 157/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNARLR-PQPVAILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ DV Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRV 179 Query: 179 SFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G EI + ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|67459748|ref|YP_247372.1| tRNA pseudouridine synthase A [Rickettsia felis URRWXCal2] gi|75535862|sp|Q4UJT2|TRUA_RICFE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|67005281|gb|AAY62207.1| tRNA pseudouridine synthase A [Rickettsia felis URRWXCal2] Length = 245 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 109/246 (44%), Positives = 151/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVISVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKHLEPHKIITAIN-YFARPYAVGVWNCELASNNFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVLTMQKAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKTEY 245 >gi|56416825|ref|YP_153899.1| tRNA pseudouridine synthase A [Anaplasma marginale str. St. Maries] gi|62901203|sp|Q5PAN6|TRUA_ANAMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56388057|gb|AAV86644.1| pseudouridylate synthase [Anaplasma marginale str. St. Maries] Length = 247 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 159/248 (64%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQCVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ SD +SIL+L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLR-SDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L+ +M+ AA H+VG + DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|225630801|ref|YP_002727592.1| tRNA pseudouridine synthase A [Wolbachia sp. wRi] gi|254764876|sp|C0R4F9|TRUA_WOLWR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225592782|gb|ACN95801.1| tRNA pseudouridine synthase A [Wolbachia sp. wRi] Length = 245 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 154/246 (62%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS C A++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I I++ A SFLH Q+R G+L G + ++ L R G APP GLY Sbjct: 180 GNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQCKRSAAGVTAPPFGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|222475190|ref|YP_002563606.1| tRNA pseudouridylate synthase A (truA) [Anaplasma marginale str. Florida] gi|254995027|ref|ZP_05277217.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Mississippi] gi|255003171|ref|ZP_05278135.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Puerto Rico] gi|255004302|ref|ZP_05279103.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Virginia] gi|254789601|sp|B9KIN8|TRUA_ANAMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222419327|gb|ACM49350.1| tRNA pseudouridylate synthase A (truA) [Anaplasma marginale str. Florida] Length = 247 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 159/248 (64%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQHVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ SD +SIL+L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLR-SDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L+ +M+ AA H+VG + DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|269958752|ref|YP_003328539.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel] gi|269848581|gb|ACZ49225.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel] Length = 247 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 158/248 (63%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQYVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ SD +SIL+L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLR-SDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L +M+ AA H+VG + DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLSVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|239948364|ref|ZP_04700117.1| tRNA pseudouridine synthase A [Rickettsia endosymbiont of Ixodes scapularis] gi|239922640|gb|EER22664.1| tRNA pseudouridine synthase A [Rickettsia endosymbiont of Ixodes scapularis] Length = 245 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQ+Q S+Q +E+AI+ ++GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQKQAGVMSVQQILEEAIYKLSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIIAAIN-YFARPYAVGVWNCELAPNNFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDILAMQKAASYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKAEY 245 >gi|42520874|ref|NP_966789.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila melanogaster] gi|51316700|sp|Q73G93|TRUA_WOLPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42410614|gb|AAS14723.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila melanogaster] Length = 245 Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 117/246 (47%), Positives = 157/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE V ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E+ + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKEFELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS CQA++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCQAANPIRTIDDIDIIQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I I++ A SFLH Q+R VG+L G + ++ L R G APP GLY Sbjct: 180 GNHIHIKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILNQCKRSAAGVTAPPFGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|157829158|ref|YP_001495400.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933887|ref|YP_001650676.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Iowa] gi|166228760|sp|A8GU17|TRUA_RICRS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030139|sp|B0BVL0|TRUA_RICRO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157801639|gb|ABV76892.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908974|gb|ABY73270.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Iowa] Length = 245 Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ GAGRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N +++ + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAINYFVR-PYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKAAY 245 >gi|51474025|ref|YP_067782.1| tRNA pseudouridine synthase A [Rickettsia typhi str. Wilmington] gi|62901283|sp|Q68VQ6|TRUA_RICTY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|51460337|gb|AAU04300.1| Pseudouridine synthase [Rickettsia typhi str. Wilmington] Length = 245 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ +GE V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTHFSGWQRQAGVLSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + P + KA+N +++ + + N +V FHARFSA R Y+YRI+ R Sbjct: 61 IAHFDLSKYLEPYKIIKAINYFVR-PYAVGVWNCELVSNNFHARFSATSRHYIYRIVNRT 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ R W I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRVWWISAPLDVLAMQQAATYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W ++ L A+DRK GP AP GLY Sbjct: 180 YEEIKLYLSAPSFLHYMVRNIVGSLVLVGKNIWQVEQIKNVLDAKDRKVAGPTAPAFGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FIKAEY 245 >gi|88607493|ref|YP_505097.1| tRNA pseudouridine synthase A [Anaplasma phagocytophilum HZ] gi|123722826|sp|Q2GKK4|TRUA_ANAPZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88598556|gb|ABD44026.1| tRNA pseudouridine synthase A [Anaplasma phagocytophilum HZ] Length = 246 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 156/247 (63%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY G+ + GWQRQ G S+Q SIE++I + V+V+ AGRTD+GVHA Sbjct: 1 MRYKAVVEYEGTSFIGWQRQHGVVGKSVQESIERSIKEFCQQSVIVYAAGRTDAGVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ ++ +SIL L VD++FHARFSA +R Y Y+I R Sbjct: 61 QVVHFDLKVSREDYVIKNALNHYLR-NEKVSILQLERVDEEFHARFSAKKRHYTYKISNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APL ++ R W +PK L+ ENMR AA ++VG+HDF +FR+ CQ+ S I+T+D D+ + Sbjct: 120 EAPLCIDLMRMWHVPKRLNVENMREAASYIVGKHDFASFRAKDCQSKSSIKTVDSIDIIA 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + A+SFLH Q+R VG+ G G + + + L+ +DR G AP GL Sbjct: 180 AEEEININISAQSFLHKQVRITVGTFVECGMGLYPPAHVLEILEKKDRAAAGITAPAHGL 239 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 240 YLTRVDY 246 >gi|332185222|ref|ZP_08386971.1| tRNA pseudouridine synthase A [Sphingomonas sp. S17] gi|332014946|gb|EGI57002.1| tRNA pseudouridine synthase A [Sphingomonas sp. S17] Length = 223 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/220 (51%), Positives = 146/220 (66%), Gaps = 1/220 (0%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 +Q ++E AI VTGE VH AGRTD+GVH L AH D+ + P L +A+NA ++ + Sbjct: 1 MQQALEDAIHAVTGERTAVHAAGRTDAGVHGLAMRAHVDIAKVIAPFRLMEAINARIRPA 60 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 +++L+ V +HARFS IRRSY YRI+ R+APL E G AW +P++LD M AA Sbjct: 61 -PVAVLDCVEVASDWHARFSCIRRSYEYRIVNRRAPLTHELGLAWQVPQALDEAAMAEAA 119 Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 LVGRHDFTTFRS+HCQA SP+RT+D V G + IR ARSFLH Q+RS VG L Sbjct: 120 ARLVGRHDFTTFRSVHCQADSPVRTLDLLSVERDGARLFIRAAARSFLHHQVRSMVGCLA 179 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LVG G+WT D+E AL A+DR + G AP +GL+F +Y Sbjct: 180 LVGMGRWTPDDVEAALVARDRAQLGLNAPSDGLFFVRADY 219 >gi|238651103|ref|YP_002916961.1| tRNA pseudouridine synthase A [Rickettsia peacockii str. Rustic] gi|259550439|sp|C4K2W2|TRUA_RICPU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238625201|gb|ACR47907.1| tRNA pseudouridine synthase A [Rickettsia peacockii str. Rustic] Length = 245 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 CPSVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKAAY 245 >gi|294678738|ref|YP_003579353.1| tRNA pseudouridine synthase A [Rhodobacter capsulatus SB 1003] gi|294477558|gb|ADE86946.1| tRNA pseudouridine synthase A [Rhodobacter capsulatus SB 1003] Length = 255 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 111/251 (44%), Positives = 155/251 (61%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ IEY+G + GWQRQ S+QG++E A+ + + AGRTD+GVHA Q Sbjct: 1 MPRFAFRIEYDGGPFAGWQRQAVLPSVQGAVEAALARLEPGEHTIAAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +L+ D ++I+ + V FHARFSA R YL+R+++R+ Sbjct: 61 VAHADLAKDWDPFRLSEALNHHLR-PDPVAIVACARVGDDFHARFSARERRYLFRLVSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP+ ++G+ W + LD MR A L+G HDFTTFR+ CQA SP++T+D + Sbjct: 120 APVVHDRGKVWQVQNPLDVAAMREGAAQLIGLHDFTTFRAAMCQAKSPVKTLDEITIEEI 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D+ +AL A+DR CGP+ PP Sbjct: 180 ALPSGREYRFHLRARSFLHNQVRSIVGTLERVGAGAWAPEDVGRALAARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLCGVGYP 250 >gi|114798579|ref|YP_759245.1| tRNA pseudouridine synthase A [Hyphomonas neptunium ATCC 15444] gi|123028359|sp|Q0C4U8|TRUA_HYPNA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114738753|gb|ABI76878.1| tRNA pseudouridine synthase A [Hyphomonas neptunium ATCC 15444] Length = 247 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 151/246 (61%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEYNG Y GW R ++QG++E A + G V V GAGRTD+GVHA Q Sbjct: 1 MPRYRLLIEYNGGPYQGWMRLPGLQTVQGALEAAAAQLDGGPVEVTGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R P + A+N +L+ I++L V++ FHARFSAI R Y Y +I R+ Sbjct: 61 VAHMDL-RVDRPNKVADAMNYHLR-PHPIAVLKADRVEEDFHARFSAIARHYRYIVINRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L ++G AW +P LD + M AAQ VG HDFTTFR CQA SP++T+ DV + Sbjct: 119 AHLTHDQGLAWRVPSRLDADKMHEAAQSFVGTHDFTTFRDSECQALSPVKTLTRLDVARY 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + IE A SF+H Q+RS VGSL VG G+ + L+A DR CGP+AP +GL+ Sbjct: 179 NDRIEFTCSAPSFIHRQVRSLVGSLVEVGRGRHPVKWAREILEAADRTRCGPVAPSDGLF 238 Query: 241 FDSVEY 246 + V+Y Sbjct: 239 LERVDY 244 >gi|190571328|ref|YP_001975686.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018724|ref|ZP_03334532.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238057739|sp|B3CMC1|TRUA_WOLPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190357600|emb|CAQ55041.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995675|gb|EEB56315.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 245 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+Q++ +SIQ +IE AIF +GE V +H GRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGERVSLHCGGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF++ R++ + +N +LK + I +L+ VD FHARFSA +R Y YRII R Sbjct: 61 VAHFNMERQFELYRIRNGINYHLK-AIPIVVLSAEAVDDAFHARFSAKKRYYEYRIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+H+ ++FRS CQA++P+RTID D+ Sbjct: 120 APAALEIGYVWQVFNPLDVNIMREAARHLLGKHNLSSFRSKDCQATNPVRTIDDIDIVQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I++ A SFLH Q+R VG+L G + ++ L R G APP GLY Sbjct: 180 GSHIYIKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILSQCKRNAAGITAPPHGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|15893251|ref|NP_360965.1| tRNA pseudouridine synthase A [Rickettsia conorii str. Malish 7] gi|24212567|sp|Q92FZ9|TRUA_RICCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15620470|gb|AAL03866.1| pseudouridylate synthase I [Rickettsia conorii str. Malish 7] Length = 245 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISAPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|296115065|ref|ZP_06833707.1| tRNA pseudouridine synthase A [Gluconacetobacter hansenii ATCC 23769] gi|295978402|gb|EFG85138.1| tRNA pseudouridine synthase A [Gluconacetobacter hansenii ATCC 23769] Length = 283 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 119/249 (47%), Positives = 159/249 (63%), Gaps = 7/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVH-GAGRTDSGVHALRQ 60 R+ + IEY+G + GWQRQ +G +S+QG +E A +TG V+ AGRTDSGVHA Q Sbjct: 30 RWAVRIEYDGRDFVGWQRQASGLTSVQGVLEAAATRLTGGRPVISITAGRTDSGVHATGQ 89 Query: 61 VAHFDLVREWVPV---ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAH D + +P+ + ALN ++K ++IL V + ARFSAI RSY YRII Sbjct: 90 VAHLDFPDD-IPLSSTAVRDALNYHMK-PHRVAILIARPVLPNWSARFSAILRSYRYRII 147 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R A L++GR W + + LD + MR AAQ L+GRHDFTTFR+ CQA SP+RT+D D+ Sbjct: 148 NRSARPTLDEGRVWHVRQPLDVDLMRQAAQFLIGRHDFTTFRASACQAKSPVRTLDRLDI 207 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G I I AR+FLH Q+R+ G+LK+VG+G W+ + +AL A DR+ GP AP E Sbjct: 208 HREGEEIVIVTEARAFLHHQVRNMTGTLKMVGEGSWSVERVGQALAACDRRAGGPTAPAE 267 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 268 GLYLTGVAY 276 >gi|91204875|ref|YP_537230.1| tRNA pseudouridine synthase A [Rickettsia bellii RML369-C] gi|157826493|ref|YP_001495557.1| tRNA pseudouridine synthase A [Rickettsia bellii OSU 85-389] gi|123266250|sp|Q1RKH3|TRUA_RICBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228758|sp|A8GUM4|TRUA_RICB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91068419|gb|ABE04141.1| tRNA pseudouridine synthase A [Rickettsia bellii RML369-C] gi|157801797|gb|ABV78520.1| tRNA pseudouridine synthase A [Rickettsia bellii OSU 85-389] Length = 245 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/246 (42%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G+ GWQRQ S+Q +E+AI+ +GE V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + + P + +A+N Y + + N +VD FHARFSAI R Y+YRI+ R Sbjct: 61 IAHFDLSKYFEPYKIIRAIN-YFTRPYIVGVCNCELVDNNFHARFSAIARHYVYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ R W I LD M+ ++ +L+G+H+FT+FR+ CQ+ SPI+T+ D+ Sbjct: 120 YPSVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSPIKTLTKLDIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ A SFLH +R+ VGSL LVG W + +++ L+ DRK GP AP GLY Sbjct: 180 NEEIKLYFSAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLY 239 Query: 241 FDSVEY 246 F +Y Sbjct: 240 FIKADY 245 >gi|258541768|ref|YP_003187201.1| tRNA pseudouridine synthase A [Acetobacter pasteurianus IFO 3283-01] gi|256632846|dbj|BAH98821.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-01] gi|256635903|dbj|BAI01872.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-03] gi|256638958|dbj|BAI04920.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-07] gi|256642012|dbj|BAI07967.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-22] gi|256645067|dbj|BAI11015.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-26] gi|256648122|dbj|BAI14063.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-32] gi|256651175|dbj|BAI17109.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654166|dbj|BAI20093.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-12] Length = 262 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 115/255 (45%), Positives = 159/255 (62%), Gaps = 20/255 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +EY+G+G GWQRQK+G S+Q +E+A L V AGRTDSGVHAL QV Sbjct: 11 RWAVKLEYDGTGLVGWQRQKSGLSVQSLLEEAAARLANNRPVSSITAGRTDSGVHALAQV 70 Query: 62 AHFDL----------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 AH D VRE L+ +LK + + +L+ + VD + ARFSAI RS Sbjct: 71 AHLDFPADVRFSRHSVRE--------GLSYHLKPHNVV-VLDAAQVDTDWSARFSAIWRS 121 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y YRI+ R++ L G+ W + +LD E M+ AA LVG HDFT+FR++ CQA SP+RT Sbjct: 122 YQYRILNRRSRPTLLAGQVWHVKSTLDVEKMQEAANILVGSHDFTSFRAVACQAHSPMRT 181 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 +D +++ G+ + + ARSFLH Q+R+ VG+LKLVG G W + +AL+A++R G Sbjct: 182 LDQLEISRHGDEVIVFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAG 241 Query: 232 PLAPPEGLYFDSVEY 246 P APPEGLY + V Y Sbjct: 242 PTAPPEGLYLNGVGY 256 >gi|157826343|ref|YP_001494063.1| tRNA pseudouridine synthase A [Rickettsia akari str. Hartford] gi|166228757|sp|A8GQ80|TRUA_RICAH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157800301|gb|ABV75555.1| tRNA pseudouridine synthase A [Rickettsia akari str. Hartford] Length = 245 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/246 (44%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + + +IV FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVVVWHCAIVLNDFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVLAMQKAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIVKG 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK G AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEHIKDVLEAKDRKAAGLTAPAYGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKTEY 245 >gi|34581081|ref|ZP_00142561.1| pseudouridylate synthase I [Rickettsia sibirica 246] gi|28262466|gb|EAA25970.1| pseudouridylate synthase I [Rickettsia sibirica 246] Length = 245 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 107/246 (43%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ S I+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSSIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|229587225|ref|YP_002845726.1| tRNA pseudouridine synthase A [Rickettsia africae ESF-5] gi|259550437|sp|C3PLZ3|TRUA_RICAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|228022275|gb|ACP53983.1| tRNA pseudouridine synthase A [Rickettsia africae ESF-5] Length = 245 Score = 211 bits (536), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 107/246 (43%), Positives = 148/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ S I+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSSIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQVEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|88608581|ref|YP_505923.1| tRNA pseudouridine synthase A [Neorickettsia sennetsu str. Miyayama] gi|123763741|sp|Q2GF33|TRUA_NEOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88600750|gb|ABD46218.1| tRNA pseudouridine synthase A [Neorickettsia sennetsu str. Miyayama] Length = 243 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 110/247 (44%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I+EY G+G+ GWQ+Q + S+Q +E + + E + V+ AGRTD+GVHAL QV Sbjct: 1 MRYKAIVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQV 60 Query: 62 AHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD RE P + A+N +LK I +L + IVD+ F ARFSAIRR Y Y+I R Sbjct: 61 FHFD-ARESTLQPFQIVNAVNYHLK-EKLIVLLKIEIVDETFDARFSAIRRHYQYKITNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + PLA+ K R+W +P++L+ + +R AQ+LVG+HDF +FRS C AS+ IRT+D +V Sbjct: 119 KTPLAVFKNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCGASNAIRTLDRLEVEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + A+SFLH Q+R VG+L + GK S + + L ++R+ GP APP GL Sbjct: 179 NGEEMIFHASAKSFLHHQVRIMVGTLVAIASGKLMS--VTEILSKKNRRYAGPTAPPCGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YLLKVDY 243 >gi|114327354|ref|YP_744511.1| tRNA pseudouridine synthase A [Granulibacter bethesdensis CGDNIH1] gi|114315528|gb|ABI61588.1| tRNA pseudouridine synthase A [Granulibacter bethesdensis CGDNIH1] Length = 270 Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 120/255 (47%), Positives = 160/255 (62%), Gaps = 11/255 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSS---------IQGSIEKAIF-LVTGEIVVVHGAGRTD 52 RY + IEY+G+ + GWQRQ S +Q +E+A L GE V AGRTD Sbjct: 12 RYALRIEYDGTPFIGWQRQGTDDSATAQGRAVSVQWVLEQAAARLARGEAVSSIVAGRTD 71 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QVA DL + P + +ALN ++K ++IL + ++ARFSAI RSY Sbjct: 72 AGVHAQAQVAQIDLPTAFHPERVREALNFHMKPY-PVAILEAAYAPDGWNARFSAIGRSY 130 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I+ R+A AL +GR W + + LD + M AA+HL+GRHDFT+FR+ CQA SP+RT+ Sbjct: 131 RYLILNRRARPALMEGRVWHVAQPLDADTMDGAAKHLLGRHDFTSFRAAACQAKSPLRTL 190 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D DV G+LI I ARSFLH Q+R+ VG+LKLVGDG+WT+ + AL A+DR + GP Sbjct: 191 DRLDVRRDGDLITIIAEARSFLHHQVRNMVGTLKLVGDGRWTAEHVAAALAARDRAKAGP 250 Query: 233 LAPPEGLYFDSVEYS 247 APP+GL V Y Sbjct: 251 TAPPDGLALTGVIYE 265 >gi|157804248|ref|YP_001492797.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. McKiel] gi|166228759|sp|A8F079|TRUA_RICCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157785511|gb|ABV74012.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. McKiel] Length = 245 Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 105/246 (42%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE VV+ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGIMSVQQILEEAIYKFSGEQVVLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + + A+N + + I + N + FHARFSA+ R Y+YRI+ R Sbjct: 61 VAHFDLSKNLETHKIITAINYFARPYSVI-VWNCEMAPNNFHARFSAVSRHYIYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + R W I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YSSVINRDRVWWISSPLDVLAMQKAATYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + +++ L+ +DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEYIKELLEVKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVRTEY 245 >gi|329114449|ref|ZP_08243211.1| tRNA pseudouridine synthase A [Acetobacter pomorum DM001] gi|326696525|gb|EGE48204.1| tRNA pseudouridine synthase A [Acetobacter pomorum DM001] Length = 262 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/247 (45%), Positives = 157/247 (63%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH-GAGRTDSGVHALRQV 61 R+ + +EY+G+G GWQRQK+G S+Q +E A + G V AGRTDSGVHAL QV Sbjct: 11 RWAVKLEYDGTGLVGWQRQKSGLSVQSLLEAAAARLAGNRPVSSITAGRTDSGVHALAQV 70 Query: 62 AHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AH D + + + + L+ +LK + + +L+ VD + ARFSA RSY YRI+ R Sbjct: 71 AHLDFPADVRFSRHSVREGLSYHLKPHNVV-VLDAVQVDTDWSARFSATWRSYQYRILNR 129 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ L G W + +LD E M+ AA LVG HDFT+FR++ CQA SP+RT+D DV+ Sbjct: 130 RSRPTLLAGNVWHVKSTLDVEKMQEAANILVGPHDFTSFRAVACQAHSPMRTLDQLDVSR 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + ARSFLH Q+R+ VG+LKLVG G W + +AL+A++R GP APPEGL Sbjct: 190 HGDEVLVFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEGL 249 Query: 240 YFDSVEY 246 Y + V Y Sbjct: 250 YLNGVGY 256 >gi|162147913|ref|YP_001602374.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|209542530|ref|YP_002274759.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|161786490|emb|CAP56072.1| putative tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|209530207|gb|ACI50144.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 115/247 (46%), Positives = 154/247 (62%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + IEY+G + GWQRQ G S+Q +E+A L +G +V AGRTD+GVHA Q Sbjct: 8 RWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGVHATGQA 67 Query: 62 AHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AH D + + ALN ++K +++L VD ++ ARFSAIRRSY YRI+ R Sbjct: 68 AHLDFPGDVRLNDSTVRDALNFHMKPY-PVAVLRACPVDTEWSARFSAIRRSYRYRILNR 126 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ L+ GR WL+ ++LD M AA+ L+GRHDFT+FR+ CQA SP+RT+D V Sbjct: 127 RSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRASACQARSPLRTLDRLGVVR 186 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I ARSFLH Q+R+ VG+LKLVG+G W + AL A DR+ GP APP+GL Sbjct: 187 QGEEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPPDGL 246 Query: 240 YFDSVEY 246 Y V Y Sbjct: 247 YLTGVGY 253 >gi|148259428|ref|YP_001233555.1| tRNA pseudouridine synthase A [Acidiphilium cryptum JF-5] gi|326402654|ref|YP_004282735.1| tRNA pseudouridine synthase A [Acidiphilium multivorum AIU301] gi|166228673|sp|A5FVK4|TRUA_ACICJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146401109|gb|ABQ29636.1| tRNA pseudouridine synthase A [Acidiphilium cryptum JF-5] gi|325049515|dbj|BAJ79853.1| tRNA pseudouridine synthase A [Acidiphilium multivorum AIU301] Length = 255 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 110/247 (44%), Positives = 147/247 (59%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R+ + +EY+G G+ GWQRQ+NG S+Q +E A L G++ AGRTD+GVHA Sbjct: 1 MRRWALRLEYDGRGFVGWQRQENGLSVQEVLETAASRLCGGDVPDSVVAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA +L + +ALN ++K I + RFSAI R+Y Y I+ R Sbjct: 61 QVAALELPDRLDARAVREALNFHMKPHAVAVIEAAPAPSAAWSPRFSAIGRAYRYLILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A AL G W + LD M AAQ L+GRHDFT+FR+ CQA+SP+RT+D DV Sbjct: 121 SARPALRDGFVWHVKAPLDAPAMHEAAQSLLGRHDFTSFRASSCQANSPLRTLDRLDVRR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I ARSFLH Q+R+ VG+LKLVG+G+W + +AL A+DR GP APP+GL Sbjct: 181 DGETVVIEAEARSFLHHQVRNMVGTLKLVGEGRWRVGRVAEALAARDRSAAGPTAPPDGL 240 Query: 240 YFDSVEY 246 +V Y Sbjct: 241 VLVAVRY 247 >gi|254796418|ref|YP_003081254.1| tRNA pseudouridine synthase A [Neorickettsia risticii str. Illinois] gi|254589655|gb|ACT69017.1| tRNA pseudouridine synthase A [Neorickettsia risticii str. Illinois] Length = 243 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 112/247 (45%), Positives = 149/247 (60%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY +EY G+G+ GWQ+Q + S+Q +E + + E + V+ AGRTD+GVHAL QV Sbjct: 1 MRYKATVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQV 60 Query: 62 AHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD RE P + A+N +LK I +L + IVD+ F ARFSAIRR Y YRII R Sbjct: 61 FHFD-ARESTLQPFQIVNAVNYHLK-EKLIVLLKIEIVDETFDARFSAIRRHYQYRIINR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A+ + R W +P L+ + MR AQHLVGRHDF +FRS C AS+ IRT+D +V Sbjct: 119 KMPPAVFRNRCWHVPWKLNLDFMREQAQHLVGRHDFQSFRSSKCGASNAIRTLDRLEVEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I A+SFLH Q+R VG+L + GK S + L ++R GP AP GL Sbjct: 179 NGEEIIFHASAKSFLHHQVRIMVGTLVAIASGKLVSAT--EILSKRNRCYAGPTAPSCGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YLLKVDY 243 >gi|157965031|ref|YP_001499855.1| tRNA pseudouridine synthase A [Rickettsia massiliae MTU5] gi|157844807|gb|ABV85308.1| tRNA pseudouridine synthase A [Rickettsia massiliae MTU5] Length = 246 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/246 (43%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQ+Q S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 2 MYRYKITIEYLGTDLAGWQKQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 62 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ A +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 121 YPSVIDLNRAWWISSPLDVPAMQQATAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 181 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPAAGLY 240 Query: 241 FDSVEY 246 F Y Sbjct: 241 FVKAAY 246 >gi|262277956|ref|ZP_06055749.1| tRNA pseudouridine synthase A [alpha proteobacterium HIMB114] gi|262225059|gb|EEY75518.1| tRNA pseudouridine synthase A [alpha proteobacterium HIMB114] Length = 245 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++EYNG+ + GWQ Q +G+++Q IEK+ + + G+GRTDSGVHA Q Sbjct: 1 MHRYKAVVEYNGTDFEGWQSQPSGNTVQQIIEKSFLEIQLNKTKIFGSGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + LN +LK IS+L+L + F +R A R+Y Y+I+ R Sbjct: 61 VFHFDYEDKLDCKKILLGLNHFLK-KKNISVLSLDFTNNNFDSRRDAKLRTYTYKILNRI 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + + + W + K+LD + M+ A+Q +G HDFTTFR+ C+A+SPIR I + ++ Sbjct: 120 ASPVILENQVWHVIKNLDFKLMQKASQIFLGSHDFTTFRASSCEATSPIREIIYSELKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I V +RSFL Q+RS VG++K VG+ KW+ DL++AL++++R C AP GLY Sbjct: 180 NDQIIYIVKSRSFLQHQVRSMVGAIKFVGEKKWSLKDLDEALKSKNRNNCATPAPACGLY 239 Query: 241 FDSVEY 246 ++VEY Sbjct: 240 LENVEY 245 >gi|58040265|ref|YP_192229.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H] gi|62901153|sp|Q5FPX3|TRUA_GLUOX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58002679|gb|AAW61573.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H] Length = 275 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 106/248 (42%), Positives = 149/248 (60%), Gaps = 6/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + IEY+G+GY GWQ+Q +G+SIQG IE A LV V AGRTD+GVHA V Sbjct: 22 RWALRIEYDGTGYLGWQKQNDGTSIQGLIEAAASKLVRNRPVPSITAGRTDAGVHAAGMV 81 Query: 62 AHFDLVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H D + P+ + + +LK + +L + V +++ARFSA RSY Y I+ Sbjct: 82 IHLDFPDD-APIDARQIRDGMGYHLK-PHRVVVLETAKVGPEWNARFSATWRSYRYTILN 139 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R A L + R W I + LD + M+ AA HL+G HDFT+FR++ CQA SPIRT+D +++ Sbjct: 140 RPARPGLMENRVWHIKRPLDVDLMQQAANHLLGPHDFTSFRAVACQARSPIRTLDVLNIH 199 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L+ I ARSFLH Q+R+ G+L ++G +W + + L+A+DR G APPEG Sbjct: 200 RDGELVMIDTKARSFLHHQVRNMAGTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEG 259 Query: 239 LYFDSVEY 246 L V Y Sbjct: 260 LCLMDVGY 267 >gi|71083164|ref|YP_265883.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1062] gi|123734383|sp|Q4FNF9|TRUA_PELUB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71062277|gb|AAZ21280.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1062] Length = 246 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 105/248 (42%), Positives = 149/248 (60%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY G+ + GWQ Q G SIQ I+ + E VV+ G+GRTD+GVHA+ Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD +E + L K++N + I+D IS+L + +FHAR SA +R Y Y I Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHF--INDKGISVLAIKKRSLKFHARHSAKQRIYKYIIFN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R + +LEK R W I K LD E M+ ++ L+G DF+TFR+ C A SPI+T+ ++ Sbjct: 119 RLSKPSLEKERGWHIIKKLDIELMKKGSKKLLGTKDFSTFRASSCNAKSPIKTMKSVNIK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 S IEI+ ++SFL Q+RS VGSLK + + KW E ++++ R C P AP EG Sbjct: 179 SKDGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEG 238 Query: 239 LYFDSVEY 246 L+ + V Y Sbjct: 239 LFLEKVIY 246 >gi|189183835|ref|YP_001937620.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Ikeda] gi|238692245|sp|B3CSN9|TRUA_ORITI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189180606|dbj|BAG40386.1| pseudouridylate synthase I [Orientia tsutsugamushi str. Ikeda] Length = 283 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 112/285 (39%), Positives = 157/285 (55%), Gaps = 41/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY I+EY+G+ + GWQRQ+NG SIQ +E I T + V + AGRTD+GVHAL Q Sbjct: 1 MLRYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVR-----------------------------EWVPVILCKALNAYLKISDT--- 88 V HFDL+ + + ++ C+ NAY +S Sbjct: 61 VVHFDLISPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKMLPCR-YNAYKLMSAVNYL 119 Query: 89 -----ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 I + + I QFHARFSA R Y YRII R P +E+ R W I L+ +M Sbjct: 120 LKPHRIILTSCEITTLQFHARFSAKARHYKYRIINRAVPSVIEQNRTWWIKTPLNVIDMI 179 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV--ARSFLHTQIRSF 201 A+QHL+G+HDFT+FRS CQA SP++T+ +V++ N EI++ A SFLH +R+ Sbjct: 180 DASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDT-TNYPEIQIYFSAPSFLHHMVRNI 238 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+L +G K + ++ L A++R GP AP GLYF V+Y Sbjct: 239 VGTLVYIGLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 283 >gi|148284891|ref|YP_001248981.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Boryong] gi|166228742|sp|A5CET3|TRUA_ORITB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146740330|emb|CAM80738.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Boryong] Length = 284 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 113/286 (39%), Positives = 156/286 (54%), Gaps = 42/286 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY I+EY+G+ + GWQRQ+NG SIQ +E I T + V + AGRTD+GVHAL Q Sbjct: 1 MLRYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQ 60 Query: 61 VAHFDLV---------------------------------REWVPV-----ILCKALNAY 82 V HFDL+ ++ +P L A+N Sbjct: 61 VVHFDLIAPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKKMLPCRYNAYKLMSAVNYL 120 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 LK I + + I QFHARFSA R Y YRII R P +E+ R W I L+ +M Sbjct: 121 LK-PHRIILTSCEITTLQFHARFSAKARHYKYRIINRTVPSVIEQNRTWWIKPPLNVIDM 179 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV--ARSFLHTQIRS 200 A+QHL+G+HDFT+FRS CQA SP++T+ +V++ N EI++ A SFLH +R+ Sbjct: 180 IDASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDT-TNYPEIQIYFSAPSFLHHMVRN 238 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+L +G K + ++ L A++R GP AP GLYF V+Y Sbjct: 239 IVGTLVYIGLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 284 >gi|117925388|ref|YP_866005.1| tRNA pseudouridine synthase A [Magnetococcus sp. MC-1] gi|117609144|gb|ABK44599.1| tRNA pseudouridine synthase A [Magnetococcus sp. MC-1] Length = 270 Score = 191 bits (486), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 145/244 (59%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + +E++GS + GWQ Q+N S+Q ++E+A+ + E + VHG+GRTD+GVHA QVA Sbjct: 14 RFRITVEFDGSAFSGWQSQQNAPSVQQALEQALAPLHNEPIRVHGSGRTDAGVHATGQVA 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + LN ++ +I++L V + FHAR+ A R YLYRI TR+ P Sbjct: 74 HFDAPAHRDAATYLRILN--VRTPHSIAVLACQPVAESFHARYDAYYRQYLYRINTRKIP 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 ALE+ R W P LD E + A+ L+G HDF++FR+ CQ+ SP++ + G+ Sbjct: 132 PALERSRVWHYPYLLDAERLAEASALLLGTHDFSSFRAAGCQSKSPVKFMRLIQWQQRGD 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ + A +FL +R+ VG+L LVG G W + + L A+DR + GP AP GLY Sbjct: 192 EWQVSIGANAFLQHMVRNLVGTLVLVGKGDWPVARVAELLAARDRVQAGPTAPAWGLYLT 251 Query: 243 SVEY 246 + Y Sbjct: 252 HICY 255 >gi|20808627|ref|NP_623798.1| tRNA pseudouridine synthase A [Thermoanaerobacter tengcongensis MB4] gi|24212532|sp|Q8R7Y7|TRUA_THETN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|20517260|gb|AAM25402.1| Pseudouridylate synthase (tRNA psi55) [Thermoanaerobacter tengcongensis MB4] Length = 240 Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 101/242 (41%), Positives = 144/242 (59%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +IIEY+G+ Y GWQ QKN ++Q +EKAI VTGE V + G+ RTD+GVHAL QVA+F Sbjct: 1 MLIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTGEKVNLIGSSRTDTGVHALYQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P L ALNA L D + ++ VDK FHAR+SA + Y Y I+ RQ P+ Sbjct: 61 KTKTKIPPEKLPYALNAVL--PDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPMP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + W +P LD E M+ AA G HDF+ F++ + +P++TI V G+LI Sbjct: 119 TMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAFKASGNKKVNPVKTIFDLTVEKEGDLI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I V A FL+ +R VG+L VG GK + ++ ++++DR + G APP+GLY + Sbjct: 179 KIEVEADGFLYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDRTKAGITAPPQGLYLVRI 238 Query: 245 EY 246 Y Sbjct: 239 VY 240 >gi|91762406|ref|ZP_01264371.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1002] gi|91718208|gb|EAS84858.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1002] Length = 246 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 105/248 (42%), Positives = 147/248 (59%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY G+ + GWQ Q G SIQ I+ + E VV+ G+GRTD+GVHA+ Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD +E + L K++N + I+D IS+L + +FHAR SA +R Y Y I Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHF--INDKGISVLAIKKRSLKFHARHSAKQRIYKYIIFN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R + +LEK R W I K LD E M+ A+ L+G DF+TFR+ C A S I+T+ + Sbjct: 119 RLSKPSLEKERGWHIIKKLDIELMKKGAKKLLGTKDFSTFRASSCNAKSSIKTMKSVKIK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 S IEI+ ++SFL Q+RS VGSLK + + KW E ++++ R C P AP EG Sbjct: 179 SKDGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEG 238 Query: 239 LYFDSVEY 246 L+ + V Y Sbjct: 239 LFLEKVIY 246 >gi|114320390|ref|YP_742073.1| tRNA pseudouridine synthase A [Alkalilimnicola ehrlichii MLHE-1] gi|114226784|gb|ABI56583.1| tRNA pseudouridine synthase A [Alkalilimnicola ehrlichii MLHE-1] Length = 261 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 142/249 (57%), Gaps = 12/249 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + +EY+GSG+ GWQRQ + S+Q ++E A+ V E V V AGRTD+GVHA QV Sbjct: 4 RFALGLEYDGSGFCGWQRQDHAPSVQAALEAALSRVADEPVTVTCAGRTDTGVHATGQVV 63 Query: 63 HFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HF+ WV L A + DT+S+ + V + FHARF A+RRSY Y Sbjct: 64 HFETGAYRPEHAWV-------LGANANLPDTVSVHWVQPVSEAFHARFGALRRSYRYVWY 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ AL +GR +LD E M +AA HL+GRHDF+ FR++ CQA P+R + DV Sbjct: 117 CSRSRPALLRGRVAWSKYALDPEPMAMAAGHLLGRHDFSAFRAVACQAKHPVRELYRLDV 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + + V A +FLH +R+ G+L L+G G+ +T L DR G AP E Sbjct: 177 WARGGFVYLDVCANAFLHHMVRNLAGTLALIGRGERPATWAADLLAGGDRTRAGATAPAE 236 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 237 GLYLVGVDY 245 >gi|254492043|ref|ZP_05105220.1| tRNA pseudouridine synthase A [Methylophaga thiooxidans DMS010] gi|224462740|gb|EEF79012.1| tRNA pseudouridine synthase A [Methylophaga thiooxydans DMS010] Length = 259 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 140/250 (56%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + GWQ Q N ++QG +EKA +V + V AGRTD+GVHAL QV Sbjct: 1 MRIALGIEYAGTDFCGWQNQPNTRTVQGELEKAASVVANHSIDVFAAGRTDTGVHALNQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R W+ L + I++ + VD +F+ARF+AI+R Y Y I Sbjct: 61 VHFDTDAIRSERGWL-------LGINANLPKDINVAWMKPVDDEFNARFTAIKRRYRYLI 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + R + A+ R W LD E M+ AA LVG+HDF+ FR+ CQA SPI+T+D Sbjct: 114 LNRLSRSAVHHNRMWWHHHPLDIERMQAAADQLVGKHDFSAFRASECQARSPIKTLDKIT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V + I + V A+SFLH +R+ VG + +GDG L++ DR + G APP Sbjct: 174 VRRQQDCIAVDVEAKSFLHHMVRNLVGVMAAIGDGSKPVDWAGDVLRSVDRSQGGVTAPP 233 Query: 237 EGLYFDSVEY 246 +GLY VEY Sbjct: 234 QGLYLVDVEY 243 >gi|291614576|ref|YP_003524733.1| tRNA pseudouridine synthase A [Sideroxydans lithotrophicus ES-1] gi|291584688|gb|ADE12346.1| tRNA pseudouridine synthase A [Sideroxydans lithotrophicus ES-1] Length = 254 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/250 (40%), Positives = 147/250 (58%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGY GWQ Q + +IQ +++ A+ + GE + + AGRTD+GVHAL QV Sbjct: 1 MRIALGIEYDGSGYNGWQSQPDVPNIQDTLQAALSRIAGENISIIAAGRTDTGVHALEQV 60 Query: 62 AHFD--LVR---EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD +VR WV + NA L +++L V +FHARFSA RSY Y + Sbjct: 61 VHFDTGIVRPLASWV-----RGTNALL--PKDVAVLWAHPVADEFHARFSAQARSYQYVL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 I R + A+ G+ LD E MR+AAQ+L+G HDF+ FRS CQA +P++T+ D Sbjct: 114 INRPSRSAVHHGKVGWFHLPLDVEAMRMAAQNLLGEHDFSAFRSSQCQAKTPVKTLAQLD 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G++I + A +FLH +R+ VG L VG GK+ + + LQ ++RK P P Sbjct: 174 IVQQGDIIIFNLTANAFLHHMVRNIVGCLLYVGKGKYPPQWMHELLQGRERKLAAPTFAP 233 Query: 237 EGLYFDSVEY 246 +GLY + Y Sbjct: 234 DGLYLCHITY 243 >gi|254447334|ref|ZP_05060801.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC5015] gi|198263473|gb|EDY87751.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC5015] Length = 261 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 103/250 (41%), Positives = 143/250 (57%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G+ Y GWQRQ NG S+Q +E+++ V V V AGRTD+GVHA +QV Sbjct: 1 MKIALGVEYDGTAYHGWQRQNNGISVQQVLEESLSKVANHGVQVQCAGRTDTGVHATQQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ +R W+ L A + +S+ V FHARFSA R Y Y I Sbjct: 61 VHFESSAQRSIRNWI-------LGANANLPFDVSVRWAKQVSDDFHARFSAQGRRYRYLI 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++R + AL RA K LD E M+ AAQHLVGRHDF+++R++HCQA SP+RT+ + Sbjct: 114 LSRYSRSALWGRRATWTHKPLDLEVMQQAAQHLVGRHDFSSYRAVHCQAKSPVRTLHSLE 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ I I V FLH +R+ G L +G G+ + L+ +DR+ G APP Sbjct: 174 VGRAGDFIYIDVHGDGFLHHMVRNIAGVLMAIGAGEAVPDWSREVLEHRDRRLGGVTAPP 233 Query: 237 EGLYFDSVEY 246 GLYF EY Sbjct: 234 WGLYFVHAEY 243 >gi|261855761|ref|YP_003263044.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2] gi|261836230|gb|ACX95997.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2] Length = 271 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 104/251 (41%), Positives = 139/251 (55%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY+GS Y GWQRQ S+Q +E A+ V V V AGRTD+GVHA Q Sbjct: 1 MARIALTLEYDGSRYHGWQRQSEVDSVQARLETALSRVADSPVDVVCAGRTDAGVHASHQ 60 Query: 61 VAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD R W+ L + ISIL+ VD +FHARFSA RSY Y Sbjct: 61 VVHFDTEAIRPERAWL-------LGVTQSLPSDISILSAQFVDPEFHARFSATARSYRYI 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I+ R AL +GR LD M A QHL+G HDF++FR+ CQ+ SP+R+I+ Sbjct: 114 ILNRMTRSALHRGRITWWRGPLDESAMHEAGQHLLGEHDFSSFRAKDCQSVSPVRSIESL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +++ G + + + A +FLH +R+ VG+L VG G+ + L LQA+DR G AP Sbjct: 174 NIHRQGEYVYMDITANAFLHHMVRNIVGTLLPVGAGERPADSLWDILQAKDRSAAGMTAP 233 Query: 236 PEGLYFDSVEY 246 +GLY V Y Sbjct: 234 ADGLYLVGVRY 244 >gi|152996062|ref|YP_001340897.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1] gi|150836986|gb|ABR70962.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1] Length = 274 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 106/246 (43%), Positives = 148/246 (60%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EYNGS Y GWQ QK G S+Q ++EKA+ ++ V V AGRTDSGVHA QV Sbjct: 4 KVVLVVEYNGSEYKGWQAQKFGVPSVQENLEKALAIIANHPVKVVCAGRTDSGVHASAQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 HF+ E +N +L SD I+++ S V FHARFSA+ R Y Y I + Sbjct: 64 VHFETDVERNERAWTLGVNTHLP-SD-ITVVAASPVSNDFHARFSALSRRYRYVIYSSDF 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L KG W K+LD M+ AA+ +G HDF++FR++ CQA +PIRTI +F+V+ Sbjct: 122 CPAILSKGITWTY-KNLDVSAMKEAAKVFLGTHDFSSFRAVGCQAKTPIRTILNFEVHQL 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + V A +FLH IR+F G L +G G+ + ++ L+A+DR + G APP GLY Sbjct: 181 GQYIVLDVRANAFLHHMIRNFAGVLMSIGAGEKPVSWAKQTLEAKDRTKGGITAPPTGLY 240 Query: 241 FDSVEY 246 F +Y Sbjct: 241 FVDAQY 246 >gi|91776053|ref|YP_545809.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT] gi|123254255|sp|Q1H0L9|TRUA_METFK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91710040|gb|ABE49968.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT] Length = 261 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 144/245 (58%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+G+ GWQ Q N ++Q ++E A+ + G V V AGRTD+GVHAL QV Sbjct: 1 MRLALGIEYDGAGFCGWQSQPNRLAVQDALESALSQLAGHQVRVSAAGRTDTGVHALSQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N K+ + +L VD +FHARF A +RSY Y +I + Sbjct: 61 VHFDTEAVRSQTAWVRGVNT--KLPRGVRVLWAKEVDPRFHARFDAYQRSYQYWLINQPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+A + LD + M+ A +L+G+HDF+ FR+ CQA SP++T+ H V++FG Sbjct: 119 APAVMAGKAGWFHQPLDLQAMQEAMAYLLGQHDFSAFRAAECQAKSPVKTMHHASVSAFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A +FLH Q+R+ VG+L +G GK+ + + L+ +DR+ P P+GLY Sbjct: 179 SSMIFDFCASAFLHHQVRNMVGALVYIGKGKYPPVFIAELLEKRDRRCSPPTFSPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|58696853|ref|ZP_00372372.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila simulans] gi|58536935|gb|EAL60107.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila simulans] Length = 188 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/185 (50%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS C A++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQN 179 Query: 181 GNLIE 185 GN I+ Sbjct: 180 GNHIQ 184 >gi|291166165|gb|EFE28211.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896] Length = 244 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 143/241 (59%), Gaps = 8/241 (3%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I+Y G+ Y GWQ+Q NG SIQ IE+AI VTG+ V + G+GRTDSGVHAL QVA+F ++ Sbjct: 9 IQYIGTNYCGWQKQNNGKSIQQEIERAICEVTGKQVNLTGSGRTDSGVHALGQVANF-VI 67 Query: 68 REWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 +PV K A+N YL D I I+ V+ FHAR+S+ +++Y YRI + E Sbjct: 68 DTTIPVEKIKYAINYYL--PDDIRIIESKAVEDSFHARYSSKKKTYCYRINMNEIESPFE 125 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 K R++ + K LD M+ ++ L+G HDF F+S + +RTI ++N N+ EI Sbjct: 126 KNRSYFVGKELDLSKMKEQSKFLMGEHDFAAFQSEGSSVKTTVRTIYSLEINCINNIAEI 185 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGK-WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 ++ FL+ +R G+L +G GK ++ D+ L + R+ GP AP GL+ + VE Sbjct: 186 HIIGNGFLYNMVRIIAGTLIEIGKGKDYSIVDI---LNTKQRENAGPTAPACGLFMEKVE 242 Query: 246 Y 246 Y Sbjct: 243 Y 243 >gi|296535340|ref|ZP_06897543.1| tRNA-pseudouridine synthase I [Roseomonas cervicalis ATCC 49957] gi|296264339|gb|EFH10761.1| tRNA-pseudouridine synthase I [Roseomonas cervicalis ATCC 49957] Length = 267 Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 101/247 (40%), Positives = 146/247 (59%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY +++E++G+ + GWQRQ +G S+Q +E+A L G+ AGRTDSGVHA Sbjct: 15 MPRYALLVEFDGAPFVGWQRQPSGLSVQQVLEEAASPLNQGQPAATQAAGRTDSGVHAEG 74 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V D+ + PV L +ALN Y +++L +++ ++ ARFS I R+Y YRI+ R Sbjct: 75 MVVQIDIAQALDPVRLREALN-YHTRPHPVAVLGVAVPPAEWSARFSCIGRAYRYRILNR 133 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL+ GR W + +LD M AAQ L+G+HDF+ FR+ CQA +RT+D DV Sbjct: 134 RPRPALQAGRVWHVGPALDAAAMHAAAQGLLGKHDFSAFRAASCQAKHALRTLDRLDVRR 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I ARSFLH Q+R+ VG+L VG G+ + L+A++R + G AP EGL Sbjct: 194 EGEEVVIHTAARSFLHHQVRNMVGTLAQVGLGRQGVDWPRRLLEARERSQAGQTAPAEGL 253 Query: 240 YFDSVEY 246 F Y Sbjct: 254 TFLEARY 260 >gi|224825086|ref|ZP_03698192.1| tRNA pseudouridine synthase A [Lutiella nitroferrum 2002] gi|224602757|gb|EEG08934.1| tRNA pseudouridine synthase A [Lutiella nitroferrum 2002] Length = 262 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G+++Q + A+ + + AGRTD+GVHAL QV Sbjct: 1 MRVALGVEYDGRAFAGWQSQPHGNTVQDKLNLALSHIACAPINTVAAGRTDAGVHALMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ E + +N++L I+++ VD++FHARFSA RSY Y ++T Sbjct: 61 VHFDVEVERPENAWVRGVNSHLPAD--IAVVWAKQVDEEFHARFSAFSRSYSYFLLTHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L G+ + LD E MR AA HL+GRHDF++FR+ CQA SP++ + D++ Sbjct: 119 RSCLLAGKVGWYHQPLDVEAMREAAAHLLGRHDFSSFRAAECQAKSPVKHLQRLDIHEAD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I ++A +FLH +R+ VG+L VG G + D+ L A+DR+ P P+GLY Sbjct: 179 GFIRFDLLADAFLHHMVRNIVGALVYVGKGTLSPEDMVDLLSARDRRHAPPTFMPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|226940175|ref|YP_002795248.1| tRNA pseudouridine synthase A [Laribacter hongkongensis HLHK9] gi|226715101|gb|ACO74239.1| TruA [Laribacter hongkongensis HLHK9] Length = 283 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G G+ GWQRQ + ++QG++E A+ + G V V AGRTD+GVHA +QV Sbjct: 26 MRIALGLEYDGRGFAGWQRQPDQDTVQGALEGALSQIAGHPVSVLAAGRTDAGVHASQQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + +N +L +++L + V FHARFSA RSY Y ++ Sbjct: 86 VHFDTGVERPLTAWVRGVNRFLPPG--VAVLWVQPVADDFHARFSACSRSYSYYLMNHPV 143 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL GR LD M+ AA L+G+HDF++FR+ CQA +P++T+ FD++ Sbjct: 144 RPALGAGRVGWFHAPLDVPAMQAAAGLLLGQHDFSSFRAAECQAKTPVKTLARFDISEHD 203 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + A +FLH +R+ VG+L VG G + L A+DR + P P+GLY Sbjct: 204 GLIRFDLQADAFLHHMVRNLVGALVYVGKGAHAPEWMAGLLAARDRTQAPPTFMPDGLYL 263 Query: 242 DSVEYS 247 +V Y Sbjct: 264 TAVGYP 269 >gi|289208514|ref|YP_003460580.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. K90mix] gi|288944145|gb|ADC71844.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. K90mix] Length = 269 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 137/249 (55%), Gaps = 12/249 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + +EY+G G GWQRQK+G S+QG +E A+ V + V + AGRTD+GVHA QVA Sbjct: 5 RWALGVEYDGRGLLGWQRQKDGPSVQGHLEAALSFVANDGVELTCAGRTDAGVHATAQVA 64 Query: 63 HFDL--VRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD VRE WV L ++ D I++ V+ FHARF A R Y Y I Sbjct: 65 HFDTSAVRERHSWV-------LGVNSRLPDGIALRWAEPVNDDFHARFKACGRRYRYVIA 117 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R ALE GR + LD M AAQ VG HDF++ R+ CQA SPIR + V Sbjct: 118 NRAVRPALEAGRVAWWRRPLDTARMHDAAQTFVGEHDFSSLRAAGCQAKSPIREVHSIAV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + + + A +FLH +R+ G L +GDG+ + L A+DR+ G AP Sbjct: 178 QRRGSYVVLDIHANAFLHHMVRNIAGVLLAIGDGREEPGWAAQILAARDRRVSGITAPAG 237 Query: 238 GLYFDSVEY 246 GLYF V+Y Sbjct: 238 GLYFVHVDY 246 >gi|157961443|ref|YP_001501477.1| tRNA pseudouridine synthase A [Shewanella pealeana ATCC 700345] gi|189030144|sp|A8H305|TRUA_SHEPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157846443|gb|ABV86942.1| tRNA pseudouridine synthase A [Shewanella pealeana ATCC 700345] Length = 261 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 140/247 (56%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ ++Q +EKA+ +V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSQYFGWQRQAEVDTVQERLEKALSIVANEPIAVHCAGRTDAGVHATGQV 60 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HF+ +R+ L +N + D I++ + +VD +FHARF+A R Y Y I Sbjct: 61 VHFETNAIRKETAWTLGVNVN----LPDNIAVRWVKVVDDEFHARFTATARRYRYMIYNH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + + P +D M AAQ+L+G DFT+FR++HCQ+++P R + +V Sbjct: 117 QLRPGILRSGVSHYPGDIDESKMHQAAQYLLGEQDFTSFRAVHCQSNTPFRCVHEVNVTR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + + A +FLH +R+ VGSL VG G + +E+ L +DR + A P GL Sbjct: 177 QGMYICVDIKANAFLHHMVRNIVGSLLEVGLGNQSVEWIEQLLALKDRNKAAATAKPNGL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YLVDVTY 243 >gi|288941328|ref|YP_003443568.1| tRNA pseudouridine synthase A [Allochromatium vinosum DSM 180] gi|288896700|gb|ADC62536.1| tRNA pseudouridine synthase A [Allochromatium vinosum DSM 180] Length = 261 Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 141/246 (57%), Gaps = 12/246 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M +EY+G+ + GWQ Q ++Q +E A+ V V+VH AGRTD+GVHAL QV HF+ Sbjct: 1 MGVEYDGTHFHGWQTQSGVRTVQSELEAAVSRVANHPVIVHCAGRTDAGVHALEQVVHFE 60 Query: 66 LV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 R WV L A + + + + VD FHARFSA R Y Y+I+ R+ Sbjct: 61 TTATRSERSWV-------LGANVNLPPDVGVRWAHPVDDGFHARFSAQARHYRYQILARR 113 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +++ RA + ++LD E MRIAA LVG HDF++FR++ CQA SPIR + + D++ Sbjct: 114 TRSPIQRDRAVWVHEALDLERMRIAAVALVGEHDFSSFRAVACQAKSPIRRVLYLDLSER 173 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + A FLH +R+ G L +G G+ + + L+ +DR+ G A P+GLY Sbjct: 174 EGLITLAIGANGFLHHMVRNIAGVLMAIGRGEASVDWTRELLEVRDRRLGGVTAQPQGLY 233 Query: 241 FDSVEY 246 F +Y Sbjct: 234 FVRADY 239 >gi|170727324|ref|YP_001761350.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908] gi|238688683|sp|B1KKN8|TRUA_SHEWM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169812671|gb|ACA87255.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908] Length = 261 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ S+Q +E+A+ V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSKYFGWQRQVEVDSVQAQLERALSKVANEPISVHCAGRTDTGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + L + + D I++ +VD+ FHARFSA R Y Y I Q Sbjct: 61 VHFDT--DAIRKESAWTLGVNVSLPDDIAVRWAKVVDEDFHARFSATARRYRYMIYNYQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M AAQH VG HDFT+FR++HCQ+ SP R + +V G Sbjct: 119 RPGILRSGVSHYRTHLDENKMHEAAQHFVGEHDFTSFRALHCQSKSPNRNVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL +G G + + + L +DR + P A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLIEIGLGHQSHEWIPELLALKDRSKAAPTAKPNGLYM 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|330721742|gb|EGG99735.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047] Length = 269 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + R + IEY+GSGY GWQ Q + S ++Q +E A+ + V V AGRTD+GVHA Sbjct: 8 LTRVALGIEYHGSGYNGWQAQNHESITVQCELESALSKIADAPVRVFCAGRTDAGVHATG 67 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD+++ + N +L D+I + V + FHARFSA+ R Y+Y I Sbjct: 68 QVVHFDVLKPRTENAWVRGTNTHL--PDSIRVRWAKFVPEDFHARFSAMARRYIYVIENT 125 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A+ + LD E M++AA +LVG HDF+++R++ CQA S I+T+ H V Sbjct: 126 PVHSAIMNKHFSFEDRPLDVERMQLAANYLVGEHDFSSYRTVRCQAKSAIKTVHHLKVER 185 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI I + A +FLH +R+ G L +VG GK ++ L A+DR G APP GL Sbjct: 186 HGSLIAIDIYANAFLHHMVRNVAGVLMMVGMGKAEPVWAKQVLDARDRTVGGVTAPPNGL 245 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 246 YLVGVDY 252 >gi|82703035|ref|YP_412601.1| tRNA pseudouridine synthase A [Nitrosospira multiformis ATCC 25196] gi|82411100|gb|ABB75209.1| tRNA pseudouridine synthase A [Nitrosospira multiformis ATCC 25196] Length = 351 Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R M++EY+GS + GWQ Q G+++Q ++E A+ + GE + V AGRTD+GVHA+ QV Sbjct: 57 VRIAMVLEYDGSNFCGWQSQPGGNTVQDAVEAALSEIAGEAIRVVTAGRTDAGVHAIYQV 116 Query: 62 AHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD E + +NA+++ + I++L S FHAR+ A+ R YLY + Sbjct: 117 LHFDTRAE-------RPMNAWVRGANALLPSGIALLWASPTADDFHARYCALERCYLYLL 169 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L + R L E+M++ AQ LVG HDF+ FR+ CQA SP+RT+ + Sbjct: 170 LNHPVRPGLHQHRVGWYHHPLRLESMQMGAQMLVGEHDFSAFRAAACQAKSPVRTLTKLE 229 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V GN++ + A +FLH +R+ VG L VG GK+ + K L+ R E P Sbjct: 230 VTRVGNMVAFELRANAFLHHMVRNIVGCLVYVGKGKFRPDWIGKLLENGKRSEAAPTFSA 289 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 290 SGLYLAGVAY 299 >gi|58699455|ref|ZP_00374196.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58534027|gb|EAL58285.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 201 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 93/198 (46%), Positives = 121/198 (61%), Gaps = 1/198 (0%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GRTD+GVHAL QVAHFD+ +E + A+N +LK S I +LN +VD FHARFSA Sbjct: 5 GRTDAGVHALGQVAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAK 63 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 +R Y YRI+ R AP ALE G W + LD MR AA+HL+G+HD ++FRS C A++P Sbjct: 64 KRYYEYRIVNRYAPAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANP 123 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IRTID D+ GN I I++ A SFLH Q+R G+L G + ++ L R Sbjct: 124 IRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQCKRS 183 Query: 229 ECGPLAPPEGLYFDSVEY 246 G APP GLY ++Y Sbjct: 184 AAGVTAPPFGLYLVKIDY 201 >gi|255604972|ref|XP_002538318.1| pseudouridylate synthase, putative [Ricinus communis] gi|223512770|gb|EEF24066.1| pseudouridylate synthase, putative [Ricinus communis] Length = 283 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 138/245 (56%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ Q +G+++Q ++ A+ + G V V AGRTD+GVHAL QV Sbjct: 25 MRVVLGLEYDGSRFCGWQSQPSGAAVQDCLQTALAQMAGHEVKVSAAGRTDAGVHALSQV 84 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + +NA+L + +L S VD +FHARFSA RRSY Y + Sbjct: 85 AHFDTAVTRPQNAWVRGVNAFLPTG--VRVLWASEVDVEFHARFSAERRSYQYVLQVSPV 142 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+ + LD + MR AA L+G HDF+ FR+ CQA +PI+ + D+ F Sbjct: 143 APAVLSGKVGWYHRPLDLKAMRNAASILLGEHDFSAFRASECQAKTPIKHLIQADIRQFD 202 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+I A +FLH +R+ VGSL VG G+ + L+ +DR+ P P+GLY Sbjct: 203 NVILFEFTASAFLHHMVRNLVGSLVYVGKGEHPPEWMRTLLEQKDRRLAAPTFMPDGLYL 262 Query: 242 DSVEY 246 V Y Sbjct: 263 TGVHY 267 >gi|89093241|ref|ZP_01166191.1| tRNA-pseudouridine synthase I [Oceanospirillum sp. MED92] gi|89082537|gb|EAR61759.1| tRNA-pseudouridine synthase I [Oceanospirillum sp. MED92] Length = 283 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 142/252 (56%), Gaps = 16/252 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + +EY+G+ Y GWQ Q+ G SIQ ++EKA+ + V V AGRTD+ V+A Q Sbjct: 23 RYALCVEYSGAEYRGWQIQREGDVPSIQATVEKALSKIANAPVSVICAGRTDARVNATYQ 82 Query: 61 VAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 + HFD R WV + + D I+I V + FHARFSA+ R Y Y Sbjct: 83 IIHFDSPVRRDERAWV-------MGTNTNLPDDIAIQWAKQVPESFHARFSALERRYRYL 135 Query: 116 IITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I + P L KG W K +D M+ A +HLVG HDFT++R++ CQA SP+RT+ Sbjct: 136 IYSNPVKPAILPKGITWTY-KEMDVARMQEAVKHLVGEHDFTSYRAVGCQAHSPVRTVKE 194 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 F+V G L+ + V A +FLH IR+F G L +G G+ ++ L A+DR++ G A Sbjct: 195 FNVYREGRLVILDVRANAFLHHMIRNFAGVLMTIGCGEAEPIWAKEVLDARDRRQGGVTA 254 Query: 235 PPEGLYFDSVEY 246 PP GLYF +Y Sbjct: 255 PPFGLYFVDAKY 266 >gi|307266981|ref|ZP_07548497.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1] gi|306917966|gb|EFN48224.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1] Length = 244 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 138/242 (57%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +++EY+G+ Y GWQ Q+N ++Q ++KAI VTGE V + GA RTD+GVHAL QVA+F Sbjct: 5 MIVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 64 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ P+ Sbjct: 65 RTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFPMP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + W I L E M+ AA +L+G HDF+ F++ +S IRT+ + I Sbjct: 123 TMRNYCWHISYPLSIEKMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKNEEFI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG+L VG GK ++ L+++DR + G APP+GLY + Sbjct: 183 NIEIEANGFLYNMVRIIVGTLSYVGLGKIEENEVYDILKSRDRTKAGITAPPQGLYLIKI 242 Query: 245 EY 246 Y Sbjct: 243 MY 244 >gi|302385211|ref|YP_003821033.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] gi|302195839|gb|ADL03410.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] Length = 248 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 4/249 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 MI+ Y M++EY+GS Y GWQ+Q N +IQG IE+ + +TG+ V VHG+GRTD+GVHAL Sbjct: 1 MIKNYRMVLEYDGSRYDGWQKQGNTEQTIQGKIEQVLERMTGQAVEVHGSGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA+F + + + + LN YL + I ++ L ++FH+R +A ++YLYRI Sbjct: 61 AQVANFHMDGKMASKEIQEYLNQYL--PEDIRVITLEPAKERFHSRLNAQEKTYLYRIEM 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + E+ + + KSL+ E M A+ +L G HDF +F S S +R + + Sbjct: 119 GERKQVFERKYIYGLYKSLNVEAMERASAYLTGEHDFKSFCSNRKMKKSTVRVLKEIEFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + IR FL+ +R G+L VG G+ + D++ L+A+DR + G APPEG Sbjct: 179 QQGSRLLIRYTGNGFLYNMVRIITGTLIEVGLGQRKAEDMKGILEAKDRNQAGFTAPPEG 238 Query: 239 LYFDSVEYS 247 L+ + V Y+ Sbjct: 239 LFLEQVRYN 247 >gi|134094449|ref|YP_001099524.1| tRNA pseudouridine synthase A [Herminiimonas arsenicoxydans] gi|189030136|sp|A4G4G0|TRUA_HERAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|133738352|emb|CAL61397.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Herminiimonas arsenicoxydans] Length = 275 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 141/246 (57%), Gaps = 2/246 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y+G+ + GWQ Q NG ++Q +E A++ T + + AGRTD+GVHAL QV Sbjct: 13 RIVLGVQYDGAPWQGWQTQLNGLTVQDKLEFALYKFTQQTITTACAGRTDAGVHALEQVV 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVD--KQFHARFSAIRRSYLYRIITRQ 120 HFD E + +N +L S + + D + FHARFSA R+Y Y + Sbjct: 73 HFDTTLERDMQSWVRGVNTFLPSSIAVRWASEVAHDPAENFHARFSARSRTYHYMLYNNP 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L +G+A + ++LD M+ AA HL+G+HDF+ FRS+ CQA SP++T+ + Sbjct: 133 VRSPLLEGKAGWVFRALDIAKMQEAAAHLLGQHDFSAFRSVQCQAKSPVKTMHAIKIERR 192 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI V A +FLH +R+ VGSL VG+G + L++ L Q+RK P P+GLY Sbjct: 193 GDLIMFTVHANAFLHHMVRNIVGSLIYVGNGTQAPSWLKEVLAGQERKFAAPTFMPDGLY 252 Query: 241 FDSVEY 246 ++Y Sbjct: 253 LAKIDY 258 >gi|167036834|ref|YP_001664412.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039553|ref|YP_001662538.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514] gi|256752665|ref|ZP_05493517.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus CCSD1] gi|300915196|ref|ZP_07132511.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561] gi|307725120|ref|YP_003904871.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513] gi|320115256|ref|YP_004185415.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687621|sp|B0K5S6|TRUA_THEPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687718|sp|B0KCN3|TRUA_THEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166853793|gb|ABY92202.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514] gi|166855668|gb|ABY94076.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748485|gb|EEU61537.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus CCSD1] gi|300888920|gb|EFK84067.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561] gi|307582181|gb|ADN55580.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513] gi|319928347|gb|ADV79032.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 244 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ Sbjct: 61 VANFKTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + Sbjct: 119 FQMPTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I I + A FL+ +R VG+L VG GK ++ L+++DR + G APP+GLY Sbjct: 179 EDFINIEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LIKIIY 244 >gi|149189278|ref|ZP_01867564.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1] gi|148836837|gb|EDL53788.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1] Length = 267 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 144/248 (58%), Gaps = 8/248 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ Y+GWQRQ++ SS+Q +EKA+ +V + V V AGRTD+GVH QV Sbjct: 1 MKVALGIEYNGANYYGWQRQRDVSSVQEELEKALSIVANQPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HF+ ++R+ P +NA L I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFESSVIRK--PAAWTMGVNANL--PKDIAVRWAKEVHEEFHARFSATARRYRYVIFNH 116 Query: 120 QA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P L G + LD E M A Q+L+G +DFT+FR++HCQ+ SP R I H +V+ Sbjct: 117 ALRPGILSSGIS-HYHGELDAEKMHQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVS 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + I + A +F+H +R+ GSL +VG G + +E LQ +DRK G A EG Sbjct: 176 RHGPYVVIDIKANAFVHHMVRNITGSLIVVGKGDQSPEWIEWLLQQKDRKLAGATAKAEG 235 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 236 LYLVDVDY 243 >gi|319779623|ref|YP_004130536.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9] gi|317109647|gb|ADU92393.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9] Length = 268 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 144/249 (57%), Gaps = 12/249 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G + GWQ Q NG ++Q +E A+ T V AGRTD+GVHAL QV Sbjct: 4 RVALGISYDGRDFQGWQTQPNGLTVQDKLEAALREFTRHQVSTICAGRTDTGVHALGQVV 63 Query: 63 HFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD + W+ + +N++L D+I + IV F ARFSA+ R+Y+Y + Sbjct: 64 HFDTEVDRNLESWI-----RGVNSHLP--DSIRVRWSKIVPDSFSARFSAVSRTYVYLLR 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + + GRA +LD E+M IA + ++G HDFT+FRS CQASSP+RT+D F + Sbjct: 117 NERVMSPIWSGRAGWDFHNLDVESMNIAKEKMIGTHDFTSFRSSQCQASSPVRTLDLFKI 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N+ G I + A FLH +R+ +G++ VG G+++ + + ++A++R P P+ Sbjct: 177 NAEGPFIIFTLRANGFLHHMVRNLIGTILYVGMGRFSPSKIPDLIEAKNRMFTAPTFMPD 236 Query: 238 GLYFDSVEY 246 GLYF V+Y Sbjct: 237 GLYFARVDY 245 >gi|218460354|ref|ZP_03500445.1| tRNA pseudouridine synthase A [Rhizobium etli Kim 5] Length = 141 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 78/119 (65%), Positives = 95/119 (79%) Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV G LIEIR Sbjct: 2 GKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTRSGALIEIR 61 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A+SFLH QIRSF G+LKL G+GKWT D+E AL+A++RK CGP+APP+GLYF V+Y Sbjct: 62 ATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARNRKACGPVAPPDGLYFLQVDY 120 >gi|94498945|ref|ZP_01305483.1| tRNA pseudouridine synthase A [Oceanobacter sp. RED65] gi|94428577|gb|EAT13549.1| tRNA pseudouridine synthase A [Oceanobacter sp. RED65] Length = 297 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 143/252 (56%), Gaps = 16/252 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ +EYNG+ + GWQ+QK+ G S+Q ++EKAI V V V AGRTD+GVHA Q Sbjct: 30 RFVAGVEYNGALFKGWQKQKHYAGPSVQEALEKAISRVANHTVDVVCAGRTDAGVHASAQ 89 Query: 61 VAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD R W L + D + + + + FHARFSA+ R Y Y Sbjct: 90 VIHFDTSAVRDERAW-------KLGINTNLPDGVCVNWIMPAPQDFHARFSAVARRYRYF 142 Query: 116 IITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I+ +Q P + G +W + LD E M AAQ+L+G HDFT+FR+ CQA +RT+ + Sbjct: 143 IMNKQVKPGLMHDGVSWW-RRPLDAEKMHEAAQYLLGEHDFTSFRAKDCQARHAVRTMKY 201 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V + + + V A +FL+ +R+ VG L +G+GK E+ L AQDR++ G A Sbjct: 202 ISVKRLNDWVIVEVCANAFLYHMVRNIVGVLLPIGEGKKPVEWCEQVLAAQDRRQAGVTA 261 Query: 235 PPEGLYFDSVEY 246 P EGLYF +VEY Sbjct: 262 PGEGLYFVNVEY 273 >gi|90021726|ref|YP_527553.1| pseudouridylate synthase [Saccharophagus degradans 2-40] gi|89951326|gb|ABD81341.1| tRNA pseudouridine synthase A [Saccharophagus degradans 2-40] Length = 289 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 148/252 (58%), Gaps = 8/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY+GS Y G+QRQ +++Q +EKA+ V E V + AGRTD+GVHA Sbjct: 22 MRRVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVANEPVTIVCAGRTDAGVHATS 81 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+ HFD + + +N +L S I +++ V FHARFSA+ R+Y Y I Sbjct: 82 QIVHFDTLAGRPSKAWLQGVNTHLPFS--IRVISAKEVGFDFHARFSALSRTYRYVIHVS 139 Query: 120 QAPLA-LEKGRAWL-IPKSL---DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 Q A L G W+ +P+ L D M+ AA L+G HDFT+FR++HCQA+SP+RT++ Sbjct: 140 QVRSAHLVNGVTWVKLPQKLSGLDVPAMQEAASLLLGEHDFTSFRTVHCQAASPVRTMEV 199 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 DV G I ++V A +FLH +R+ VG L VG G+ + + + ++ +DR + A Sbjct: 200 ADVVQMGEFIVVQVTANAFLHHMVRNIVGVLLRVGRGELKPSRVTELIELRDRSQAAETA 259 Query: 235 PPEGLYFDSVEY 246 P GLYF +V+Y Sbjct: 260 PAAGLYFVNVQY 271 >gi|220934425|ref|YP_002513324.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. HL-EbGR7] gi|219995735|gb|ACL72337.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. HL-EbGR7] Length = 259 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 104/252 (41%), Positives = 136/252 (53%), Gaps = 14/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY+GSG+ GWQ Q G ++Q +E+A+ V V V AGRTD+GVHA Q Sbjct: 1 MMRIALGVEYDGSGFCGWQTQLQGRAVQACVEQALSRVANHPVSVVCAGRTDAGVHATAQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD R WV L + IS+L VD F ARFSA R Y Y Sbjct: 61 VIHFDTESVRTARSWV-------LGGNTHLPPEISLLWAKEVDADFSARFSARSRRYRYV 113 Query: 116 IITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I+ R P L + +W P LD E M A Q L+G DFT+FR++ CQA SP+RT+ Sbjct: 114 ILNRWVRPGVLHRKVSWHHPP-LDAERMHAAGQRLLGEWDFTSFRAVGCQAKSPVRTLLS 172 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G+ I + V A +FLH +R+ G L VG+G+ + + L A+DR G A Sbjct: 173 LSVTRRGDFIYLDVHANAFLHHMVRNIAGVLMAVGEGERPVEWVSEVLHARDRTLGGVTA 232 Query: 235 PPEGLYFDSVEY 246 PP GLY VEY Sbjct: 233 PPHGLYLVHVEY 244 >gi|294789610|ref|ZP_06754844.1| tRNA pseudouridine synthase A [Simonsiella muelleri ATCC 29453] gi|294482411|gb|EFG30104.1| tRNA pseudouridine synthase A [Simonsiella muelleri ATCC 29453] Length = 261 Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 149/252 (59%), Gaps = 17/252 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNGS ++GWQ+Q + ++Q ++E A+ ++ + + V AGRTD+GVHA QV Sbjct: 4 RYVLTLAYNGSAFYGWQKQTADVPTVQSALEHALSVIAQQPIKVTAAGRTDTGVHATAQV 63 Query: 62 AHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD + WV + +NA+L + +++L+ V +FHARF A R Y R Sbjct: 64 VHFDSDANRPISAWV-----RGVNAHLP--NDVAVLHAQAVASEFHARFDAFARRY--RY 114 Query: 117 ITRQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + AP+ L GRA +LD N++ A Q L+G HDF++FR+ CQA SPI+T+ Sbjct: 115 VLQFAPVRSPLLVGRAGWTHYNLDINNIQAACQFLLGEHDFSSFRAAECQAKSPIKTMYS 174 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 D+ + G+LI++ A +FLH IR+ VG+L VG G+ + + + ++ + R + P Sbjct: 175 IDIQAMGDLIKLDFHANAFLHHMIRNIVGALVYVGSGRLSVNEFAELIEKRSRLDAPPTF 234 Query: 235 PPEGLYFDSVEY 246 P+GLYF +Y Sbjct: 235 MPDGLYFAGADY 246 >gi|59712303|ref|YP_205079.1| tRNA pseudouridine synthase A [Vibrio fischeri ES114] gi|197334265|ref|YP_002156517.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11] gi|62901138|sp|Q5E455|TRUA_VIBF1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690294|sp|B5FFN7|TRUA_VIBFM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|59480404|gb|AAW86191.1| pseudouridylate synthase I [Vibrio fischeri ES114] gi|197315755|gb|ACH65202.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11] Length = 262 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 139/246 (56%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ++ +S+Q +EKA+ +V E + VH AGRTD+GVH QV Sbjct: 1 MRIALCIEYDGAEYYGWQRQRDVNSVQEELEKALTIVANEPIEVHCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HFD NA L I++ V++ FHARF+A R Y Y I R Sbjct: 61 VHFDTTSSRKLAAWMMGANANL--PKNIAVRWAKEVNEDFHARFTATARRYRYIIYNNRL 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + +LD M A Q+L+G +DFT+FR++HCQ+ SP R + H V Sbjct: 119 RPAILGHGVS-HYHDALDANLMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A +F+H +R+ GSL VG GK ++ L+A+DRK G A EGLY Sbjct: 178 GDFIVIDIKANAFVHHMVRNITGSLIEVGKGKQKPEWIKWLLEAKDRKLAGATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|88812707|ref|ZP_01127954.1| Pseudouridylate synthase [Nitrococcus mobilis Nb-231] gi|88790123|gb|EAR21243.1| Pseudouridylate synthase [Nitrococcus mobilis Nb-231] Length = 284 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 140/250 (56%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS + GWQRQ + S+Q ++E+A+ V V V AGRTD+GVHA QV Sbjct: 26 MRVALGIEYDGSRFSGWQRQSHRLSVQVALEEALSRVADHPVTVTCAGRTDAGVHATHQV 85 Query: 62 AHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R WV + +N+ L I I + V + FHARF+A RSY Y I Sbjct: 86 IHFDTTAPRPSRAWV-----RGVNSNLP--GDIRITWVRAVPQVFHARFAATARSYRYVI 138 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++R P AL + R + L MR+AAQ+L+G HDF+++R++ CQA P+RT+ D Sbjct: 139 LSRAVPPALHRRRVAWTYRPLQLSAMRVAAQYLLGEHDFSSYRALACQARHPVRTVHRLD 198 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+ + V A +FLH +R+ G L +G G + LQA+DR G AP Sbjct: 199 ITRCGDYFYVDVTANAFLHHMVRNIAGVLLSIGSGARPPQWSWEILQARDRTAGGVTAPA 258 Query: 237 EGLYFDSVEY 246 GLY +V Y Sbjct: 259 GGLYLVAVRY 268 >gi|71280165|ref|YP_270466.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H] gi|123760979|sp|Q47XK4|TRUA_COLP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71145905|gb|AAZ26378.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H] Length = 259 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 144/245 (58%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + IEY+G Y GWQRQ N ++Q +EKA+ + E + V AGRTD+GV+A QV Sbjct: 1 MRYALGIEYDGKNYCGWQRQNNVITVQEKLEKALSKIADEKIEVVCAGRTDTGVNATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ +N +L SD +++ + VD FHARFSA R+Y Y I + Sbjct: 61 IHFDTEKKRKDTAWTLGVNTHLP-SD-VAVAWVKKVDDDFHARFSATARNYRYIIYNKPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD M+ A +L+G+HDFT+FR++HCQ+ S +RTI H V G Sbjct: 119 RSAILSHGISHCHFALDENLMQQGADYLLGKHDFTSFRTVHCQSHSAVRTIKHCRVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ VGSL VG + T +++ L A++R G APPEGLYF Sbjct: 179 DYLVVDIKANAFLHHMVRNVVGSLMRVGQSQETPHWMKEVLLAKNRCVAGVTAPPEGLYF 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|253999257|ref|YP_003051320.1| tRNA pseudouridine synthase A [Methylovorus sp. SIP3-4] gi|253985936|gb|ACT50793.1| tRNA pseudouridine synthase A [Methylovorus sp. SIP3-4] Length = 261 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ + GWQ Q G +Q ++E+ + + V V AGRTD+GVHAL QV Sbjct: 1 MRVALGLEYDGAHFCGWQSQPGGCGVQDALERELARMACHPVRVIAAGRTDTGVHALAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ E + LNA+++ + ++ +L VD +FHARFSA +R Y Y + Sbjct: 61 VHFETTTE-------RPLNAWVRGVNAGLPSSVRVLWAQQVDDEFHARFSARQRYYQYIL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + A+ G+ +SLD + M AA HL+G HDF+ FR+ CQA SPIRT+ + Sbjct: 114 FDQAVAPAILAGKVGWFHQSLDVDAMAEAAAHLIGEHDFSAFRAAECQAKSPIRTLQQAE 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G I +FLH Q+R+ VG+L VG G +++ LQ+ DR+ P P Sbjct: 174 VRRAGQAILFEFSGNAFLHHQVRNMVGALVYVGKGSQPPAFIQQLLQSHDRRLAPPTFSP 233 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 234 DGLYLSGVGY 243 >gi|311086513|gb|ADP66594.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 266 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 139/243 (57%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEY 246 VEY Sbjct: 247 VEY 249 >gi|219681571|ref|YP_002467957.1| pseudouridylate synthase I [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682129|ref|YP_002468513.1| pseudouridylate synthase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471256|ref|ZP_05635255.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254789608|sp|B8D8Z8|TRUA_BUCA5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789609|sp|B8D7A3|TRUA_BUCAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219621862|gb|ACL30018.1| pseudouridylate synthase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624414|gb|ACL30569.1| pseudouridylate synthase I [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085941|gb|ADP66023.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087094|gb|ADP67174.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087644|gb|ADP67723.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 266 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 139/243 (57%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEY 246 VEY Sbjct: 247 VEY 249 >gi|326390628|ref|ZP_08212183.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW 200] gi|325993306|gb|EGD51743.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW 200] Length = 244 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 137/242 (56%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +++EY+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL QVA+F Sbjct: 5 MIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 64 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ + Sbjct: 65 KTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQMP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + W I L E M+ AA +L+G HDF+ F++ +S IRT+ + + I Sbjct: 123 TMRNYCWHIDYPLSIEKMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKDEDFI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY + Sbjct: 183 NIEIEANGFLYNMVRIIVGTLSYVGLGKIEVNEVYDILTSRDRTKAGITAPPQGLYLIKI 242 Query: 245 EY 246 Y Sbjct: 243 MY 244 >gi|15616818|ref|NP_240030.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11135207|sp|P57295|TRUA_BUCAI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25292033|pir||D84953 pseudouridylate synthase (EC 4.2.1.70) [imported] - Buchnera sp. (strain APS) gi|10038881|dbj|BAB12916.1| pseudouridylate synthase I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 266 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 139/243 (57%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKILPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMNFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEY 246 VEY Sbjct: 247 VEY 249 >gi|149910526|ref|ZP_01899165.1| tRNA pseudouridine synthase A [Moritella sp. PE36] gi|149806369|gb|EDM66342.1| tRNA pseudouridine synthase A [Moritella sp. PE36] Length = 263 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/247 (43%), Positives = 138/247 (55%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQK+ S+Q +E A+ V V VH AGRTDSGVH QV Sbjct: 1 MRIALGIEYDGSKYYGWQRQKDVISVQEKLEDALSRVANHPVRVHCAGRTDSGVHGTGQV 60 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD VR+ V L +NA L D I++ VD++FHARFSA R Y Y I Sbjct: 61 VHFDTDAVRQDVAWTL--GVNANL--PDDIAVRWALEVDEEFHARFSATARRYRYIIYNS 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q A+ +D E M AAQ LVG HDFT+FR+ HCQA SPI+T+ H +V Sbjct: 117 QLRPAILSAGVSHYYGDIDVELMHEAAQQLVGEHDFTSFRAKHCQAKSPIKTMHHINVIR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I I V A +FLH +R+ GSL VG G + + + L +DR + EGL Sbjct: 177 QNSYIIIDVKANAFLHHMVRNLAGSLMEVGKGNKPVSWIAELLAGKDRSVAAATSKAEGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YMVEVDY 243 >gi|114331148|ref|YP_747370.1| tRNA pseudouridine synthase A [Nitrosomonas eutropha C91] gi|122313976|sp|Q0AGX7|TRUA_NITEC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114308162|gb|ABI59405.1| tRNA pseudouridine synthase A [Nitrosomonas eutropha C91] Length = 277 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/250 (38%), Positives = 139/250 (55%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I+EY+G GY GWQ+Q + S+Q +E A+ + + V AGRTD+GVHAL QV Sbjct: 1 MKIVLILEYDGRGYCGWQKQPDRISVQSRLESALSRIASSQIQVVAAGRTDAGVHALCQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ + WV + NA L D IS+L S V+ FHARFSA R+YLY + Sbjct: 61 VHFETHVIRPLTAWV-----RGANALLP--DDISVLWASEVNDDFHARFSATERTYLYYL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++R A + +G+ SLD E M+ AA+ L+G HDF+ FRS CQA + IR + D Sbjct: 114 LSRPARPGIFQGKTGWTHYSLDLEKMQTAARFLIGEHDFSAFRSAECQAKNAIRKLVRLD 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ A +FLH +R+ +G+L +G GK+ ++ L +DR P P Sbjct: 174 ISQSEQFFVFEFCANAFLHHMVRNILGALIYIGQGKYPPEWIQILLGKRDRTLAAPTFSP 233 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 234 DGLYLAGVRY 243 >gi|300703716|ref|YP_003745318.1| tRNA pseudouridylate synthase i [Ralstonia solanacearum CFBP2957] gi|299071379|emb|CBJ42698.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum CFBP2957] Length = 274 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 145/252 (57%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 + H D LVRE P + NA+L T+++ V + FHARFSA RR+Y Y ++ Sbjct: 61 IVHLDTDLVRE--PFSWVRGTNAFLP--PTVAVRWAQAVPEDFHARFSAHRRTYYYALVS 116 Query: 118 --TRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 TR L + G L P +SLD M+ AAQ LVG HDF++FR+ CQA SP++T+ Sbjct: 117 GPTRSPLLGGKAGYVMLPPGQSLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTLYS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK P Sbjct: 177 AEVRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTF 236 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 237 MPDGLYLAEVGY 248 >gi|319760619|ref|YP_004124557.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str. BVAF] gi|318039333|gb|ADV33883.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str. BVAF] Length = 255 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 137/239 (57%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y GWQ+QKNG S+Q +E A+ +VT E V V AGRTDSGVHAL QV HF+ Sbjct: 8 IEYDGSRYCGWQKQKNGISVQDCVENALNIVTAESVSVFCAGRTDSGVHALGQVVHFETD 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 ++ +N YL S I I +S++ + FHARFSA+ R Y Y I + A+ Sbjct: 68 VKYSKSAWTFGVNRYLPRS--ICIRWVSLMKQDFHARFSAVSRRYYYYIYNDKIRSAILF 125 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + W K LD M AAQ+L+G +DF+ FRS CQ+ S R + H V G + I Sbjct: 126 QKTWHYTKLLDVCKMSRAAQYLLGENDFSAFRSAGCQSYSRCRNLYHLRVIRIGQCVIID 185 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A SFL+ +R+ VGSL VG G + + + L++ R G AP +GLY V+Y Sbjct: 186 IQANSFLYRMVRNIVGSLVEVGCGNRPAIWILELLKSCKRSLAGMTAPADGLYLAEVKY 244 >gi|152980861|ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] gi|189029996|sp|A6T009|TRUA_JANMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151280938|gb|ABR89348.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] Length = 271 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 137/248 (55%), Gaps = 4/248 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y+G+ + GWQ Q NG ++Q +E A+ T + V AGRTD+GVH L QV Sbjct: 7 RIVLGVQYDGTPWQGWQTQLNGLTVQDRLEFALSKFTLQTVSTVCAGRTDAGVHGLEQVV 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTI----SILNLSIVDKQFHARFSAIRRSYLYRIIT 118 HFD E + +N +L S + + + FHARFSA R Y Y + Sbjct: 67 HFDTTLERDMSSWVRGVNTFLPPSIAVRWATEVAHNPDEQDNFHARFSARSRMYQYVLYN 126 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L +G+A + + LD E MR AAQHL+G HDF+TFRS+ CQA SP++++ + Sbjct: 127 NPVRSPLLEGKAGWVFRKLDVERMRTAAQHLLGEHDFSTFRSVQCQAKSPVKSMYSIKIE 186 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+LI + A +FLH +R+ VGSL VG+G L++ L +DRK P P+G Sbjct: 187 QRGDLIMFTLHANAFLHHMVRNIVGSLIYVGNGAQQPDWLKELLDGRDRKFAAPTFMPDG 246 Query: 239 LYFDSVEY 246 LY ++Y Sbjct: 247 LYLAKIDY 254 >gi|284047733|ref|YP_003398072.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM 20731] gi|283951954|gb|ADB46757.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM 20731] Length = 245 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYC-MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR + Y+G+ Y G+QRQKNG +Q +EKA+ V E +++ AGRTD+GVHAL Sbjct: 1 MIRTIKATVAYDGTRYQGFQRQKNGVGVQQVLEKALTEVLKEPILIKAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F P +AL +L I+I +V FHARF A+ ++Y Y+I Sbjct: 61 QVISFATSSRIPPENYRRALEPHL--PPDIAIREAEVVRDDFHARFDAVDKTYQYKIYYS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ W I + LD E M AA L+G+HDFT+F++ Q +SP+RT+ Sbjct: 119 PLPDPTQRNTTWEIREKLDVEAMNRAAALLLGKHDFTSFKNQGSQDTSPVRTLTEAHWVQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GNL + FL+ +R+ VG L VG G+W D + + A++RK+ G AP +GL Sbjct: 179 DGNLYTFTITGDGFLYRMVRNIVGCLVRVGTGQWNEEDFARVMAAKNRKQAGMAAPAQGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLMHVSY 245 >gi|325981656|ref|YP_004294058.1| tRNA pseudouridine synthase A [Nitrosomonas sp. AL212] gi|325531175|gb|ADZ25896.1| tRNA pseudouridine synthase A [Nitrosomonas sp. AL212] Length = 265 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++EY+GS Y GWQ Q SIQ ++E A+ + E + V AGRTD+GVHAL Q Sbjct: 1 MARIILVLEYDGSRYCGWQSQPENCSIQNALETALSKIAHEEIHVITAGRTDAGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + +NA+L D I++L S V +FHAR+SA+ R YLY ++ + Sbjct: 61 VVHFDTFVQRPLNAWVRGVNAFLP--DDIAVLWASEVSDRFHARYSALERRYLYFLLNQS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + L + M+ AA L+G HDF++FR+ CQA SPIRTI + Sbjct: 119 VRPGVNHKKVGWFHQPLQLDIMQRAANILIGEHDFSSFRAAACQAKSPIRTITQLKIARH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GNL+ + A +FL +R+ +G L +G GK++S + + L+ +R P P GLY Sbjct: 179 GNLLIFDLRANAFLQHMVRNIIGCLVYIGKGKYSSEWMLELLEGCNRAYAAPTFSPAGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LAGVKY 244 >gi|169347102|ref|ZP_02866044.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|169296785|gb|EDS78914.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] Length = 244 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA VA+F Sbjct: 6 LIIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAYVANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALN+ K+ I I+N V + FHAR+ ++Y Y I+ R+ P AL Sbjct: 66 TNSNIPGKNFKAALNS--KLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + GN I+ Sbjct: 124 ERNCVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETEGNKIK 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL + V Sbjct: 184 IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLCLEKVF 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|30248700|ref|NP_840770.1| tRNA pseudouridine synthase [Nitrosomonas europaea ATCC 19718] gi|42559793|sp|Q820P8|TRUA_NITEU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|30180295|emb|CAD84602.1| tRNA pseudouridine synthase [Nitrosomonas europaea ATCC 19718] Length = 272 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 139/251 (55%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY+G GY GWQ+Q S+Q +E A+ V G + V AGRTD+GVHAL Q Sbjct: 11 FVKIVLALEYDGRGYCGWQKQPGCLSVQSRLESALSGVAGRQIQVVAAGRTDAGVHALCQ 70 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-----ISILNLSIVDKQFHARFSAIRRSYLYR 115 V H + + + LNA+++ ++ ISIL S V FHARFSA R+YLY Sbjct: 71 VVHLE-------TCVRRPLNAWIRGTNALLPGDISILEASEVSDDFHARFSATERTYLYY 123 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +++R A + G+ + LD E M++AA+ L+G+HDF+ FRS CQ+ + IR + Sbjct: 124 LLSRPARPGIHHGKIGWVHYPLDLEKMQMAAKLLIGKHDFSAFRSSECQSRTAIRQLTRL 183 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +++ L A +FLH +R+ +G L +G GK+ + L+ +DR P Sbjct: 184 NISQHQQLFVFEFCANAFLHHMVRNILGGLVYIGRGKYPPEWMRILLEKRDRTLAAPTFS 243 Query: 236 PEGLYFDSVEY 246 P+GLY V Y Sbjct: 244 PDGLYLSGVRY 254 >gi|297545296|ref|YP_003677598.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843071|gb|ADH61587.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 240 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 137/242 (56%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++++Y+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL QVA+F Sbjct: 1 MIVVQYDGTNYHGWQYQKNAITVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L ALN+ L D I I V+ FHAR+SA R+ Y Y I+ R+ + Sbjct: 61 KTNTKIPAEKLPYALNSVL--PDDIVITQAKDVEDSFHARYSAKRKRYKYLILNRKFRMP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + + I Sbjct: 119 TMRNYCWHISYPLNVEKMKKAATYLIGTHDFSAFKASGSSKTSTIRTVYDLIIEKNEDFI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY + Sbjct: 179 NIEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYNILASKDRTKAGITAPPQGLYLIKI 238 Query: 245 EY 246 Y Sbjct: 239 IY 240 >gi|85859802|ref|YP_462004.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] gi|85722893|gb|ABC77836.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] Length = 259 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 139/242 (57%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY+G+ Y GWQRQ N +IQ +E++I +T E V++HG+GRTD+GVHAL QVA+F Sbjct: 20 LVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEPVILHGSGRTDAGVHALNQVANFR 79 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L + LN+ L I I VD++FH+R+SA +SYLYRI+ L Sbjct: 80 TSSRIPAANLLRGLNSLL--PGDIVIRETEDVDEEFHSRYSAKSKSYLYRILNSPVRSPL 137 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SFGNLI 184 ++ AW I LD E M A L G+HDFT+F + S +RTI ++ +I Sbjct: 138 QRNSAWFIRCCLDLEKMAGAISLLCGKHDFTSFCAAGSDVKSCVRTIIRAEIERETEQVI 197 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I V A FL +R+ VG+L +G G+ +S + L+A+DR G APP+GL+ V Sbjct: 198 TISVEADGFLRHMVRNIVGTLVEIGAGQDSSEIMRDILEAKDRGCAGITAPPQGLFLQKV 257 Query: 245 EY 246 Y Sbjct: 258 SY 259 >gi|289579109|ref|YP_003477736.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9] gi|289528822|gb|ADD03174.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9] Length = 240 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 137/242 (56%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++++Y+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL QVA+F Sbjct: 1 MIVVQYDGTNYHGWQLQKNAITVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L ALN+ L D I I V+ FHAR+SA R+ Y Y I+ R+ + Sbjct: 61 KTNTKMPAEKLPYALNSVL--PDDIVITQAKDVEDSFHARYSAKRKRYKYIILNRKFRMP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + + I Sbjct: 119 TMRNYCWHISYPLNVEKMKKAATYLIGTHDFSAFKASGSSKTSTIRTVYDLIIEKNEDFI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY + Sbjct: 179 NIEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYHILASKDRTKAGITAPPQGLYLIKI 238 Query: 245 EY 246 Y Sbjct: 239 IY 240 >gi|167573521|ref|ZP_02366395.1| tRNA pseudouridine synthase A [Burkholderia oklahomensis C6786] Length = 270 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFLP--STVSVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA+HLVG HDF+ FRS CQA SPI+ + + G Sbjct: 119 RSPMLAGRAGWVHMPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPIKHLYQISIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L ++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLDSRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|167624561|ref|YP_001674855.1| tRNA pseudouridine synthase A [Shewanella halifaxensis HAW-EB4] gi|189030143|sp|B0TKZ4|TRUA_SHEHH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167354583|gb|ABZ77196.1| tRNA pseudouridine synthase A [Shewanella halifaxensis HAW-EB4] Length = 261 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 138/247 (55%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ ++Q +EKA+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSQYFGWQRQAEVDTVQERLEKALSIVANEPIAVQCAGRTDAGVHATGQV 60 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HF+ VR+ L +N + D I++ + +VD +FHARF+A R Y Y I Sbjct: 61 VHFETNAVRKDTAWTLGVNVN----LPDNIAVRWVKVVDDEFHARFTATARRYRYMIYNH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + + P +D M AAQ+L+G DFT+FR++ CQ+++P R + +V+ Sbjct: 117 QLRPGILRSGVSHYPGVIDEAKMHQAAQYLLGEQDFTSFRAVQCQSNTPFRCVHEVNVSR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + + A +FLH +R+ VGSL VG G +E+ L +DR + A P GL Sbjct: 177 QGMYICVDIKANAFLHHMVRNIVGSLLEVGLGNQPIEWIEQLLALKDRNKAAATAKPNGL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YLVDVTY 243 >gi|110799502|ref|YP_697060.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|168205200|ref|ZP_02631205.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|168211871|ref|ZP_02637496.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] gi|110674149|gb|ABG83136.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|170663322|gb|EDT16005.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|170710156|gb|EDT22338.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] Length = 244 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 137/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA VA+F Sbjct: 6 LTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAYVANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALN+ K+ I I+N V + FHAR+ ++Y Y I+ R+ P AL Sbjct: 66 TNSNIPGKNFKAALNS--KLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + GN I+ Sbjct: 124 ERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETEGNKIK 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL + V Sbjct: 184 IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLCLEKVF 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|53722721|ref|YP_111706.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei K96243] gi|124382508|ref|YP_001025653.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10229] gi|126446203|ref|YP_001077728.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10247] gi|217422201|ref|ZP_03453704.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 576] gi|238563050|ref|ZP_04610365.1| tRNA pseudouridine synthase A [Burkholderia mallei GB8 horse 4] gi|251766902|ref|ZP_04819864.1| tRNA pseudouridine synthase A [Burkholderia mallei PRL-20] gi|254176501|ref|ZP_04883159.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 10399] gi|254184999|ref|ZP_04891588.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1655] gi|254201168|ref|ZP_04907533.1| tRNA pseudouridine synthase A [Burkholderia mallei FMH] gi|254205140|ref|ZP_04911493.1| tRNA pseudouridine synthase A [Burkholderia mallei JHU] gi|62901261|sp|Q63JL6|TRUA_BURPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228683|sp|A3MBU2|TRUA_BURM7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228684|sp|A2S134|TRUA_BURM9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52213135|emb|CAH39174.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei K96243] gi|126239057|gb|ABO02169.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10247] gi|147748780|gb|EDK55855.1| tRNA pseudouridine synthase A [Burkholderia mallei FMH] gi|147754726|gb|EDK61790.1| tRNA pseudouridine synthase A [Burkholderia mallei JHU] gi|160697543|gb|EDP87513.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 10399] gi|184215591|gb|EDU12572.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1655] gi|217394432|gb|EEC34451.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 576] gi|238521484|gb|EEP84935.1| tRNA pseudouridine synthase A [Burkholderia mallei GB8 horse 4] gi|243064541|gb|EES46727.1| tRNA pseudouridine synthase A [Burkholderia mallei PRL-20] gi|261826841|gb|ABM98766.2| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10229] Length = 271 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q ++E+++ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQSQPHGKTVQDALERSLAEFAQTSLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VVHFDTDLDRADFSWVRGTNAFLP--PTVAVQWAKPMPDTFHARFAAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA + LD + MR AA HLVG HDF+ FRS CQA SP++ + + Sbjct: 119 VRSPMLAGRAGWVHTPLDVDAMREAAAHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ S+ L + L+++DR P PEGLY Sbjct: 179 GDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLAEVLESRDRDCAAPTFMPEGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAHVGY 244 >gi|326795335|ref|YP_004313155.1| tRNA pseudouridine synthase A [Marinomonas mediterranea MMB-1] gi|326546099|gb|ADZ91319.1| tRNA pseudouridine synthase A [Marinomonas mediterranea MMB-1] Length = 270 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 140/246 (56%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EY+GS Y GWQ QK + ++Q +E A+ + V V AGRTD+GVHA QV Sbjct: 5 KVVLVVEYDGSRYKGWQAQKFDVDTVQEKLEYALSKIANHSVGVICAGRTDAGVHASSQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 HF+ E +N +L IS++ + V +FHARFSA+ R Y Y I + Sbjct: 65 VHFETASERPIRAWTLGVNTHL--PPDISVVAANYVADEFHARFSALTRRYRYVIYQSEF 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + KG W K L + M+ AA +G HDF+++R+I CQA SPIRT+ +F VN F Sbjct: 123 RPAIMAKGVTWTY-KDLSEQKMQQAAACFIGTHDFSSYRAIGCQARSPIRTVLNFSVNKF 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +FLH IR+F G L +G G+ ++ L A+DR + G APP GLY Sbjct: 182 GQYIVLDIRANAFLHHMIRNFAGVLMAIGAGEKPVQWAKQVLDAKDRTQGGVTAPPHGLY 241 Query: 241 FDSVEY 246 F +Y Sbjct: 242 FVDAQY 247 >gi|27365335|ref|NP_760863.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6] gi|37680609|ref|NP_935218.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016] gi|320155720|ref|YP_004188099.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O] gi|31340462|sp|Q8CWK3|TRUA_VIBVU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42559737|sp|Q7M7J4|TRUA_VIBVY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27361482|gb|AAO10390.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6] gi|37199357|dbj|BAC95189.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016] gi|319931032|gb|ADV85896.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O] Length = 264 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ +S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTDYFGWQRQREVASVQEKLEKALSKVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTNVERKMVAWTMGANANL--PKDIAVRWAKAVPDEFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR++ CQ+ SP R + H +V G Sbjct: 119 RPGILGSGVSHYHGELDEKKMHEAGQYLLGENDFTSFRAVQCQSLSPFRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +VG G+ ++ L+A+DRK GP A EGLY Sbjct: 179 HYVVIDIKANAFVHHMVRNITGSLIMVGRGEQDPEWIKWLLEAKDRKLAGPTAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|167566409|ref|ZP_02359325.1| tRNA pseudouridine synthase A [Burkholderia oklahomensis EO147] Length = 270 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFLP--STVSVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA+HLVG HDF+ FRS CQA SPI+ + + G Sbjct: 119 RSPMLAGRAGWVHMPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPIKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L ++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLDSRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|329900760|ref|ZP_08272580.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480] gi|327549402|gb|EGF33969.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480] Length = 267 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 140/252 (55%), Gaps = 12/252 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y+G+ + GWQ Q +G+++Q +++A+F T + H AGRTD+GVHA+ QV Sbjct: 5 RLVLGVQYDGTPWHGWQTQLSGNTVQDRLQQALFKFTQSDITTHCAGRTDTGVHAIEQVV 64 Query: 63 HFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQ--FHARFSAIRRSYLYR 115 HFD + WV + LN +L S + ++ +D Q FHARFSA R+Y Y Sbjct: 65 HFDTPLDRPISSWV-----RGLNTHLPPSIAVRWATVARLDPQHEFHARFSARSRTYHYL 119 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + L +A + + LD + MR AAQ L+G HDFT FRS CQA SP++ + Sbjct: 120 LYNNPVRSPLWNDKAGWVFRPLDLDRMREAAQSLIGTHDFTAFRSADCQAKSPVKMMHEI 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +LI I++ A +FLH +R+ VGSL VG G+ L + + +DR P Sbjct: 180 AITRRDDLIVIKLHANAFLHHMVRNLVGSLIYVGTGRQPVDWLSELILQKDRHLAAPTFS 239 Query: 236 PEGLYFDSVEYS 247 P+GLY ++Y Sbjct: 240 PDGLYLAKIDYD 251 >gi|168216665|ref|ZP_02642290.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] gi|182381201|gb|EDT78680.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] Length = 244 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 137/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA VA+F Sbjct: 6 LTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAYVANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALN+ K+ I I+N V + FHAR+ ++Y Y I+ R+ P AL Sbjct: 66 TNSNIPGKNFKAALNS--KLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + GN I+ Sbjct: 124 ERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETEGNKIK 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL + V Sbjct: 184 IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKSGICVPPTGLCLEKVF 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|18311353|ref|NP_563287.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13] gi|42559846|sp|Q8XHV5|TRUA2_CLOPE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|18146037|dbj|BAB82077.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13] Length = 244 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 137/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA VA+F Sbjct: 6 LTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAYVANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALN+ K+ I I+N V + FHAR+ ++Y Y I+ R+ P AL Sbjct: 66 TNSNIPGKNFKAALNS--KLPKDIVIINSEEVAEDFHARYMTTGKTYCYTILNREEPPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + GN I+ Sbjct: 124 ERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETEGNKIK 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL + V Sbjct: 184 IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLCLEKVF 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|260773232|ref|ZP_05882148.1| tRNA pseudouridine synthase A [Vibrio metschnikovii CIP 69.14] gi|260612371|gb|EEX37574.1| tRNA pseudouridine synthase A [Vibrio metschnikovii CIP 69.14] Length = 264 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 139/246 (56%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ YFGWQRQ++ S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYFGWQRQRDVISVQEKLEKALSIIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 HFD E NA L I++ +V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERNMAAWTMGANANL--PKDIAVRWAKVVADDFHARFSATARRYRYVIYNHAY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + P+ LD + M++A Q+L+G +DFT+FR++HCQ+ SP R I H +V+ Sbjct: 119 RPGILSSGVSHYHPE-LDVQRMQLAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVSRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + A +F+H +R+ VGSL VG G+ +E L A+DRK A EGLY Sbjct: 178 ERYVVVDIKANAFVHHMVRNIVGSLIEVGRGEKEPQWIEWLLAAKDRKLAAATAKAEGLY 237 Query: 241 FDSVEY 246 +V+Y Sbjct: 238 LVAVDY 243 >gi|83748092|ref|ZP_00945121.1| tRNA pseudouridine synthase A [Ralstonia solanacearum UW551] gi|207742812|ref|YP_002259204.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum IPO1609] gi|83725278|gb|EAP72427.1| tRNA pseudouridine synthase A [Ralstonia solanacearum UW551] gi|206594206|emb|CAQ61133.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum IPO1609] Length = 274 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 143/252 (56%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 + H D LVRE P + NA+L T+++ V + FHARFSA RR+Y Y ++ Sbjct: 61 IVHLDTDLVRE--PFSWVRGTNAFLP--STVAVRWAQAVPEDFHARFSAHRRTYYYALVS 116 Query: 118 --TRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 TR L + G L P LD M+ AAQ LVG HDF++FR+ CQA SP++T+ Sbjct: 117 GPTRSPLLGGKAGYVMLPPGEWLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTLYS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK P Sbjct: 177 AEVRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTF 236 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 237 MPDGLYLAEVGY 248 >gi|209694634|ref|YP_002262562.1| tRNA pseudouridine synthase A [Aliivibrio salmonicida LFI1238] gi|238057726|sp|B6EIW6|TRUA_ALISL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|208008585|emb|CAQ78760.1| tRNA pseudouridine synthase A [Aliivibrio salmonicida LFI1238] Length = 262 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 146/248 (58%), Gaps = 8/248 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQ QK+ +S+Q +EKA+ +V E + V AGRTD+GVH QV Sbjct: 1 MRIALCIEYDGASYHGWQSQKDVTSVQEELEKALMVVANEPIEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT- 118 HFD VR+ +PV + +NA L I++ + V++ FHARF+A R Y Y I Sbjct: 61 VHFDTNSVRK-LPVWMV-GVNANL--PKNIAVRWVKEVNEDFHARFTATARRYRYIIFNN 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ P G + ++LD + M A Q+L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 117 RQRPAIFSHGVS-HYHETLDADLMHEAGQYLLGENDFTSFRAVRCQSRTPWRNLIHLKVT 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I I + A +F+H +R+ GSL VG GK ++ L+A+DRK G A EG Sbjct: 176 RHGDFIVIDIKANAFVHHMVRNITGSLIEVGRGKQKPEWVQWLLEAKDRKLAGATAKAEG 235 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 236 LYLIDVDY 243 >gi|307825597|ref|ZP_07655815.1| tRNA pseudouridine synthase A [Methylobacter tundripaludum SV96] gi|307733483|gb|EFO04342.1| tRNA pseudouridine synthase A [Methylobacter tundripaludum SV96] Length = 267 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/251 (39%), Positives = 137/251 (54%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+GSG+ GWQ Q + S+Q +E+A+ V V V AGRTD+GVHAL Q Sbjct: 1 MTRIVLGIEYDGSGFSGWQWQTHQRSVQQVLEQALSKVANHPVTVQCAGRTDTGVHALEQ 60 Query: 61 VAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD E WV L + D + I + FHAR+SAI R Y Y Sbjct: 61 VVHFDAKVERELHTWV-------LGGNSNLPDDVRITWVKPAVGDFHARYSAIARFYRYV 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I+ R AL + +A LD + M AAQHL+G+HDF+TFR+ CQ+ SP R + Sbjct: 114 ILNRPIKSALLRNQATWHHNPLDADKMHRAAQHLIGKHDFSTFRAQGCQSKSPCREMYFI 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 DV + + I + A +FLH +R+ G L +G GK + ++ L+ ++RK G AP Sbjct: 174 DVYRDDDKVIIDISANAFLHHMVRNIAGVLMDIGAGKQDESWTQELLEVKNRKLGGVTAP 233 Query: 236 PEGLYFDSVEY 246 P GLY +V Y Sbjct: 234 PYGLYLGAVYY 244 >gi|207722996|ref|YP_002253419.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum MolK2] gi|206588185|emb|CAQ18754.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum MolK2] Length = 274 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/255 (38%), Positives = 146/255 (57%), Gaps = 16/255 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 + H D LVRE WV + NA+L T+++ V + FHARFSA RR+Y Y Sbjct: 61 IIHLDTDLVREAFSWV-----RGTNAFLP--STVAVRWAQAVPEDFHARFSAHRRTYYYA 113 Query: 116 II---TRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 ++ TR L + G L P +SLD M+ AAQ LVG HDF++FR+ CQA SP++T Sbjct: 114 LVSGPTRSPLLGGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKT 173 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + +V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK Sbjct: 174 LYSAEVRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAA 233 Query: 232 PLAPPEGLYFDSVEY 246 P P+GLY V Y Sbjct: 234 PTFMPDGLYLAEVGY 248 >gi|157374791|ref|YP_001473391.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3] gi|189030145|sp|A8FTU0|TRUA_SHESH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157317165|gb|ABV36263.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3] Length = 261 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 136/250 (54%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G YFGWQRQ S+Q +E+A+ V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGRQYFGWQRQAEVDSVQAQLERALSKVANEPIRVHCAGRTDAGVHATGQV 60 Query: 62 AHFDL--VRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ +R+ W L + + D I++ + IVD +FHARFSA R Y Y I Sbjct: 61 VHFETNAIRKDSAWT-------LGVNVNLPDDIAVRWVKIVDDEFHARFSATARRYRYMI 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + ++D + M AAQ VG HDFT+FR++HCQ+ +P R++ + Sbjct: 114 YNYDFRPGILRSGVSHYRGNIDADIMHQAAQQFVGEHDFTSFRALHCQSKTPFRSVHEVN 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G I + + A +FLH +R+ VG+L +G G + + L +DR + P A P Sbjct: 174 VTRQGMYICVDIKANAFLHHMVRNIVGTLLEIGLGNQRPEWIPQLLDLKDRSQAAPTAKP 233 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 234 NGLYMVDVTY 243 >gi|170691065|ref|ZP_02882231.1| tRNA pseudouridine synthase A [Burkholderia graminis C4D1M] gi|170144314|gb|EDT12476.1| tRNA pseudouridine synthase A [Burkholderia graminis C4D1M] Length = 270 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 134/248 (54%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R + I+Y+GS + GWQ Q +G+++Q +E+A+ F T VV AGRTD+GVH L Sbjct: 1 MKRIALGIQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVHTVV--AGRTDTGVHGL 58 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD E V + N +L TIS+ + + FHARFSA R+Y Y + Sbjct: 59 GQVVHFDTELERADVSWVRGTNTFLP--KTISVQWAKPMPEAFHARFSAFERTYYYLLYV 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + RA + LD E MR AA HL+G HDF+ FRS CQA +PI+ + D+ Sbjct: 117 HPVRSPMLAARAGWVHTPLDIEAMRAAAAHLIGEHDFSAFRSSQCQAKTPIKHLHQIDIE 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + R A +FLH +R+ +G L +G + + + L ++DR+ P P+G Sbjct: 177 QHGDFVHFRFRANAFLHHMVRNLMGCLVYIGKRRRPVEWMAEVLASRDRESAAPTFMPDG 236 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 237 LYLAQVGY 244 >gi|310659467|ref|YP_003937188.1| tRNA pseudouridine synthase a [Clostridium sticklandii DSM 519] gi|308826245|emb|CBH22283.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA pseudouridylate synthase I 1) [Clostridium sticklandii] Length = 249 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++IEY+G+ Y GWQRQ N +S+Q IEKAI+ VT + ++G+GRTD+ VHAL Q Sbjct: 1 MRNILILIEYDGTNYNGWQRQPNAASVQEEIEKAIYKVTKKQTDIYGSGRTDAKVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN L D I ILN V ++FH+R+SA ++Y YR++ Sbjct: 61 VANFHTDSAIPTEKFAVALNTNL--PDDIVILNSIEVPEEFHSRYSAKVKTYRYRVLNTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +E+ A+ + + LD + ++ A+ L+G HDF F S + IRTI + Sbjct: 119 VRRPIERNYAYHVREDLDLDIIKTMAKLLIGEHDFKAFSSSGSSVKTTIRTIYDIKITKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++IE FL+ +R VG+L +G K T D+++AL DR GP APP+GL+ Sbjct: 179 NDIIEFEFTGNGFLYNMVRIIVGTLIELGK-KSTRYDIQRALMTGDRGFAGPTAPPQGLF 237 Query: 241 FDSVEYS 247 V Y+ Sbjct: 238 LKKVSYN 244 >gi|34498219|ref|NP_902434.1| tRNA pseudouridine synthase A [Chromobacterium violaceum ATCC 12472] gi|42559750|sp|Q7NUD6|TRUA_CHRVO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|34104072|gb|AAQ60432.1| pseudouridylate synthase A [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 138/251 (54%), Gaps = 13/251 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 +R + IEY+G + GWQ Q +G+++Q + +A+ + G VV H AGRTD+GVHA Q Sbjct: 1 MRIALGIEYDGRAFAGWQSQPHGNTVQDRLNRALGQIAGNRDVVTHAAGRTDAGVHAAMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD + LNA+++ + ++++ V FHARFSA RSY Y Sbjct: 61 VVHFD-------TDASRPLNAWVRGVNALLPPEVAVVWAREVGDDFHARFSAFSRSYSYF 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++T L G+ ++LD MR AA L+GRHDF++FR+ CQA SP++ + Sbjct: 114 LLTHPVRSCLLAGKVGWYHQALDVAAMREAAAGLLGRHDFSSFRASECQAKSPVKDLQRL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D+ L+ + A +FLH +R+ VG+L VG G + D++ L A+DR P Sbjct: 174 DIIEADGLLRFDLHADAFLHHMVRNIVGALLYVGKGALSPADMQSLLAARDRTSAPPTFM 233 Query: 236 PEGLYFDSVEY 246 P+GLY V Y Sbjct: 234 PDGLYLTGVGY 244 >gi|312882128|ref|ZP_07741878.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122] gi|309370264|gb|EFP97766.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122] Length = 264 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQK S+Q +EKA+ +V V V AGRTD+GVH Q+ Sbjct: 1 MKIALGIEYNGSQYFGWQRQKEVKSVQECLEKALSIVANHKVEVQCAGRTDAGVHGTGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFETTASRKAVAWTMGANANL--PKDIAVRWAKEVPDEFHARFSATARRYRYLIFNDAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V S G Sbjct: 119 RPGILSSGVSHYHGDLDVTQMHKAGQYLLGENDFTSFRATHCQSKSPWRNLMHLNVTSHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +VG G+ + L +DRK+ G A EGLY Sbjct: 179 KYIVVDIKANAFVHHMVRNIVGSLLVVGRGEKKPEWIRDLLAIKDRKQAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|260776454|ref|ZP_05885349.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450] gi|260607677|gb|EEX33942.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450] Length = 264 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQK S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTHYYGWQRQKEVKSVQEKLERALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +NA L + I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTSASRKMVAWTMGVNANL--PNDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M A Q+L+G +DFT+FR++HCQ+ SP R I H DV G Sbjct: 119 RPGIMSSGVSHYHGELDAEKMHQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLDVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ +DRK G A GLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEWIKWLLEVKDRKLAGATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|17546704|ref|NP_520106.1| tRNA pseudouridine synthase A [Ralstonia solanacearum GMI1000] gi|42559848|sp|Q8XXX8|TRUA_RALSO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17429003|emb|CAD15687.1| probable trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum GMI1000] Length = 274 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 143/252 (56%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 V H D LVR+ P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTELVRD--PFSWVRGTNAFLP--PTVAVRWAQAMPEDFHARFSAHRRTYYYALTY 116 Query: 118 --TRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 TR L + G L P +SLD M AAQ LVG HDF++FR+ CQA SP++T+ Sbjct: 117 GPTRAPLLEGKAGYVTLPPGQSLDVTAMHEAAQVLVGEHDFSSFRAAECQAKSPVKTMYS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G + +R+ +FLH +R+ +G L +G GK + + + L A+DRK P Sbjct: 177 TEVRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPAAWMGEVLAARDRKAAAPTF 236 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 237 MPDGLYLAEVGY 248 >gi|323493306|ref|ZP_08098429.1| tRNA pseudouridine synthase A [Vibrio brasiliensis LMG 20546] gi|323312392|gb|EGA65533.1| tRNA pseudouridine synthase A [Vibrio brasiliensis LMG 20546] Length = 264 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +E A+ +V + V AGRTD+GVH QV Sbjct: 1 MRIALCIEYNGTQYFGWQRQREVKSVQEKLEHALSIVANHPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L D I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANL--PDDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAL 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSSGVS-HYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ +E L A+DRK G A EGLY Sbjct: 178 GQYVVIDIKANAFVHHMVRNITGSLICVGRGEQEPQWIEWLLAAKDRKLAGATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|167767146|ref|ZP_02439199.1| hypothetical protein CLOSS21_01665 [Clostridium sp. SS2/1] gi|167711121|gb|EDS21700.1| hypothetical protein CLOSS21_01665 [Clostridium sp. SS2/1] gi|291559527|emb|CBL38327.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2] Length = 248 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 135/244 (55%), Gaps = 5/244 (2%) Query: 6 MIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + IEY+GS Y GWQR N ++IQG +E + +TGE V ++G+GRTD+GVHA QVA Sbjct: 7 LTIEYDGSRYQGWQRLGGDSNANTIQGKLESVLSKMTGEDVNINGSGRTDAGVHAYGQVA 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + L YL SD I I+ +S ++FH+R +A ++YLYRI Sbjct: 67 NFHTDCMMSVSEIKNYLTKYLP-SD-IGIVEVSEASERFHSRLNAKEKTYLYRIAIPGVS 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E+ W P++LD + M AA L+G HDF F SI S +RTI + ++ Sbjct: 125 NVFERKYLWYFPETLDIKKMEEAASLLIGTHDFKGFSSIKKTKKSTVRTIYNIEIKKTKK 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I+I FLH +R G+L VG GK D+ KAL++ R + G APP+GL+ Sbjct: 185 EIQISYTGNGFLHNMVRILTGTLVEVGCGKIKPEDITKALESTKRSDAGITAPPQGLFLV 244 Query: 243 SVEY 246 SVEY Sbjct: 245 SVEY 248 >gi|237746730|ref|ZP_04577210.1| tRNA pseudouridine synthase A [Oxalobacter formigenes HOxBLS] gi|229378081|gb|EEO28172.1| tRNA pseudouridine synthase A [Oxalobacter formigenes HOxBLS] Length = 264 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 135/248 (54%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+G+ GWQ Q +G ++Q +E AI T + AGRTD+GVHA Q Sbjct: 4 MKRIALGIEYDGTGWRGWQTQPDGMTVQDQLEAAIRQFTRMDMATTCAGRTDAGVHATEQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTIS-ILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H D E +PV + +N+YL S + + FHAR SAI R Y Y + Sbjct: 64 VVHLDTGLERLPVSWVRGINSYLPSSIAVRWACEVPGGKDGFHARSSAIARRYRYLVYNS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L K RA + + LD E MR A L+G HDF+ FR+ CQ+ +P++T++ + Sbjct: 124 PVRSPLWKNRAGWVFRPLDLEWMREGAGFLLGEHDFSAFRAAECQSITPVKTMNGIGIEK 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GNLI A +FLH IR+ VGSL +VG G +++ L+++DR + P P+GL Sbjct: 184 QGNLIVFTFEANAFLHHMIRNIVGSLIVVGKGNRPPKWMKELLESRDRSQAAPTFMPDGL 243 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 244 YLSRVFYE 251 >gi|212635890|ref|YP_002312415.1| tRNA pseudouridine synthase A [Shewanella piezotolerans WP3] gi|226708659|sp|B8CPW5|TRUA_SHEPW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212557374|gb|ACJ29828.1| tRNA pseudouridine synthase [Shewanella piezotolerans WP3] Length = 261 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ + S+QG +EKA+ V E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSRYYGWQRQLDVDSVQGQLEKALSKVANEPITVQCAGRTDTGVHGTGQV 60 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD +R+ L +N + D I++ + +VD++FHARFSA R Y Y I Sbjct: 61 VHFDTNAIRKETAWTLGVNVN----LPDDIAVRWVKVVDEEFHARFSATARRYRYMIYNH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + + ++D + M AAQ VG HDFT+FR++ CQ+ +P R I +V Sbjct: 117 QLRPGILRSGVSHYRGNIDEDKMHQAAQLFVGEHDFTSFRALQCQSKTPFREIHEVNVTR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + + A +FLH +R+ VG+L +G G + L +DR + A P GL Sbjct: 177 QGMYICVDIKANAFLHHMVRNIVGTLLEIGKGNQPKEWVNTLLALKDRSKAAATAQPNGL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YLVDVTY 243 >gi|300114593|ref|YP_003761168.1| tRNA pseudouridine synthase A [Nitrosococcus watsonii C-113] gi|299540530|gb|ADJ28847.1| tRNA pseudouridine synthase A [Nitrosococcus watsonii C-113] Length = 259 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 95/250 (38%), Positives = 136/250 (54%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ QK ++Q ++E+A+ V E V V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGSNFSGWQSQKGVRTVQATLERALSTVANEPVTVITAGRTDAGVHAAAQV 60 Query: 62 AHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD L WV + ++IL V++ FHARFSAI R Y Y + Sbjct: 61 VHFDTTTFRLEHHWV-------FGGNANLPPEVAILWAQPVNEAFHARFSAIARHYRYIV 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + R+ A+ R + L M+ A LVG HDF++FR+ CQA SP+R + H + Sbjct: 114 LNRRTRPAIANRRVTWYCQPLSVTKMKEAGAFLVGEHDFSSFRAKACQAKSPVRNVHHLE 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ I + + A +FLH +R+ G L +G G+ E+ LQA+ R G A P Sbjct: 174 VTRQGDWIIMDISANAFLHHMVRNIAGVLMAIGKGEQPPRWAEEVLQARCRAVGGVTARP 233 Query: 237 EGLYFDSVEY 246 +GLY SV+Y Sbjct: 234 DGLYLVSVDY 243 >gi|110802389|ref|YP_699630.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] gi|110682890|gb|ABG86260.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] Length = 244 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 136/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA VA+F Sbjct: 6 LTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAYVANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALN+ K+ I I+N V + FHAR+ ++Y Y I+ R+ P AL Sbjct: 66 TNSNIPGKNFKAALNS--KLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + GN I+ Sbjct: 124 ERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIEIEGNKIK 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL + V Sbjct: 184 IYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLCLEKVF 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|313884603|ref|ZP_07818364.1| tRNA pseudouridine synthase A [Eremococcus coleocola ACS-139-V-Col8] gi|312620387|gb|EFR31815.1| tRNA pseudouridine synthase A [Eremococcus coleocola ACS-139-V-Col8] Length = 256 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 138/253 (54%), Gaps = 8/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 M RY + +EY+GS Y G+Q Q NG S+Q +++A+ + V+ +GRTDSGVH Sbjct: 1 MPRYAIKVEYDGSNYVGYQVQPNGPSVQAQLDRALLKLAKRPADHPVLTVASGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV HFDL E P+ L KALN+ L + I ++ +S V FHAR+ AI ++YLYRI Sbjct: 61 ALGQVVHFDLDFEIHPLALAKALNSIL--NKDIRVVAVSQVAPDFHARYHAIGKAYLYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 T+ P ++ P D M+ A LVG+HDFT+F S H +RTI Sbjct: 119 DTQAYPDPFKRFYTLHHPYRYDLGKMQRALTDLVGQHDFTSFCSTHSDKEDKVRTIKFAT 178 Query: 177 VNSFGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + E+R + FL+ +R VG+L +GDG + ++ L +DR + GP A Sbjct: 179 IEEDLVNQELRFMIAGNGFLYNMVRIIVGTLLQIGDGLKPVDEFKRLLAVKDRNQAGPTA 238 Query: 235 PPEGLYFDSVEYS 247 P GLY V+Y Sbjct: 239 DPSGLYLYRVDYK 251 >gi|294141648|ref|YP_003557626.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12] gi|293328117|dbj|BAJ02848.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12] Length = 275 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 133/247 (53%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ ++Q +E+A+ V + + VH AGRTD+GVH QV Sbjct: 15 MRVALGIEYDGSKYYGWQRQLEVDTVQAQLERALSKVANQPITVHCAGRTDAGVHGTGQV 74 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HF+ +R+ L +N + D I++ + +VD FHARFSA R Y Y I Sbjct: 75 VHFETTAIRKESAWTLGVNVN----LPDDIAVKWVKLVDDDFHARFSATARRYRYLIYNY 130 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + LD M AAQH VG HDFT+FR++HCQ+ SP R + +V Sbjct: 131 HLRPGILRSGVSHYRGQLDENKMHQAAQHFVGEHDFTSFRALHCQSKSPFRHVHEVNVTR 190 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A +FLH +R+ VGSL +G G + + L +DR + P A P GL Sbjct: 191 QGMYLCVDIKANAFLHHMVRNIVGSLIEIGQGHQQGDWIVELLALKDRSKAAPTAKPNGL 250 Query: 240 YFDSVEY 246 Y V Y Sbjct: 251 YMVDVTY 257 >gi|238024257|ref|YP_002908489.1| tRNA pseudouridine synthase A [Burkholderia glumae BGR1] gi|237878922|gb|ACR31254.1| Pseudouridylate synthase [Burkholderia glumae BGR1] Length = 276 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFHGWQSQPHGNTVQDTLERALKAFARVPLQTVVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L S +++ + + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRTAFSWVRGTNAFLPPS--VAVQWAKPMPEAFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD E MR AA HL+G HDF++FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLAARAGWVHTPLDVEAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDIRPSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L++ L A++R P P+GLY Sbjct: 179 SFIHFRFRANAFLHHMVRNLMGCLIAVGRGRYPADWLDEVLAARNRDRAAPTFAPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|299066408|emb|CBJ37593.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum CMR15] Length = 274 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 144/252 (57%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G ++ AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVVLPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 V H D LVR+ P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VIHLDTDLVRD--PFSWVRGTNAFLP--PTVAVRWAQAMPEDFHARFSAHRRTYYYALTY 116 Query: 118 --TRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 TR L + G L P +SLD M AAQ LVG HDF++FR+ CQA SP++T+ Sbjct: 117 GPTRAPLLEGKAGYVTLPPGQSLDVAAMHEAAQVLVGEHDFSSFRAAECQAKSPVKTMYS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G + +R+ +FLH +R+ +G L +G GK + + + L A++RK P Sbjct: 177 AEVRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPAAWMGEVLAARERKAAAPTF 236 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 237 MPDGLYLAEVGY 248 >gi|258646072|ref|ZP_05733541.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] gi|260403447|gb|EEW96994.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] Length = 246 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y I++Y+G+ Y GWQ+QK +IQG +EK + +TGE V V GAGRTD+GVH+L Q Sbjct: 1 MNYRCIVQYDGTRYEGWQKQKRTEETIQGKLEKTLRKITGEEVQVIGAGRTDAGVHSLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F L W L ALN L D I++ ++ +++FH+RFS + ++Y YRI T Sbjct: 61 VVNFHLKGRWKAEELETALNGDL--PDDIALKHMETAEERFHSRFSTLEKTYRYRIRTST 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ W KSLD E M+ AA L+G +DFT+F S +R I ++ Sbjct: 119 EKNVFERRFVWQYGKSLDIEAMKKAAAFLIGTYDFTSFCGNKKMKKSAVRCISGIEMKEI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I FL +R VG+L VG+GK + + L+++ R++ G APP+GL Sbjct: 179 KGELQIDFTGDGFLQGMVRILVGTLVEVGEGKRKAESIPAILESKSREKAGFTAPPQGLI 238 Query: 241 FDSVEYS 247 SV Y Sbjct: 239 LVSVRYE 245 >gi|331086292|ref|ZP_08335372.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406058|gb|EGG85581.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 249 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G+ Y GWQ Q NG +++ I KA+ +TGE + V GA RTDSGVHAL VA Sbjct: 5 RIKLTIAYDGTNYCGWQVQPNGITVEEVINKALCKLTGEDIAVIGASRTDSGVHALGNVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 FD P + ALN ++ D I I+ V FH R+ ++Y Y II + P Sbjct: 65 VFDSATSIPPERIAMALNQ--RLPDDIVIVKSEEVATDFHPRYCDCEKTYEYHIINTRTP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + ++ + + LD E M+ AA +LVG HDF +F ++ Q +RT+ +V G Sbjct: 123 IPTKRLTNYFVSYDLDVERMQQAADYLVGEHDFVSFCNVRTQVEDTVRTVTELEVLREGE 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I IR+ FL+ +R VG+L VG G +T +++ L+A+DRK G AP GL Sbjct: 183 EITIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRKAAGVTAPAHGLMLV 242 Query: 243 SVEY 246 + Y Sbjct: 243 EIRY 246 >gi|325662523|ref|ZP_08151126.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] gi|325471219|gb|EGC74444.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] Length = 249 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G+ Y GWQ Q NG +++ I KA+ +TGE + V GA RTDSGVHAL VA Sbjct: 5 RIKLTIAYDGTNYCGWQVQPNGITVEEVINKALCKLTGEDIAVIGASRTDSGVHALGNVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 FD P + ALN ++ D I I+ V FH R+ ++Y Y II + P Sbjct: 65 VFDSATSIPPERIAMALNQ--RLPDDIVIVKSEEVAPDFHPRYCDCEKTYEYHIINTRTP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + ++ + + LD E M+ AA +LVG HDF +F ++ Q +RT+ +V G Sbjct: 123 IPTKRLTNYFVSYDLDVERMQQAADYLVGEHDFVSFCNVRTQVEDTVRTVTELEVLREGE 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I IR+ FL+ +R VG+L VG G +T +++ L+A+DRK G AP GL Sbjct: 183 EITIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRKAAGVTAPAHGLMLV 242 Query: 243 SVEY 246 + Y Sbjct: 243 EIRY 246 >gi|125975420|ref|YP_001039330.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405] gi|256005284|ref|ZP_05430250.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360] gi|281419381|ref|ZP_06250396.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20] gi|166991160|sp|A3DJK8|TRUA_CLOTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125715645|gb|ABN54137.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405] gi|255990720|gb|EEU00836.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360] gi|281407001|gb|EFB37264.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20] gi|316939545|gb|ADU73579.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313] Length = 244 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 137/242 (56%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ Y GWQ+QKN ++Q +IE+AI +TGE V + GA RTD GVHAL QVA+F Sbjct: 6 LIIEYDGTNYHGWQKQKNAKTVQDTIERAIKGLTGEKVDLIGASRTDFGVHALGQVANF- 64 Query: 66 LVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +P ALN L D I I VD FHAR+ A + Y Y I Q P A Sbjct: 65 ITNSGIPGDRFSYALNRML--PDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFPSA 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L + R + + LD E+M+ AA + +G HDF+ FRS A + +RTI + ++ Sbjct: 123 LLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAFRSSGSSAKTSVRTITDVSLEREDKIV 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + + FL+ +R VG+L VG GK + ++ + ++++ RK G AP EGLY V Sbjct: 183 KFEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRTAPAEGLYLVEV 242 Query: 245 EY 246 Y Sbjct: 243 YY 244 >gi|53716174|ref|YP_106286.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 23344] gi|76817905|ref|YP_335930.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710b] gi|121597592|ref|YP_991241.1| tRNA pseudouridine synthase A [Burkholderia mallei SAVP1] gi|126443551|ref|YP_001063441.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 668] gi|126456028|ref|YP_001076342.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106a] gi|134278539|ref|ZP_01765253.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 305] gi|167724493|ref|ZP_02407729.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei DM98] gi|167743453|ref|ZP_02416227.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 14] gi|167820639|ref|ZP_02452319.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 91] gi|167828999|ref|ZP_02460470.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 9] gi|167850474|ref|ZP_02475982.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei B7210] gi|167899069|ref|ZP_02486470.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 7894] gi|167907414|ref|ZP_02494619.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei NCTC 13177] gi|167915752|ref|ZP_02502843.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 112] gi|167923592|ref|ZP_02510683.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei BCC215] gi|226195622|ref|ZP_03791209.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pakistan 9] gi|237508302|ref|ZP_04521017.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei MSHR346] gi|242312379|ref|ZP_04811396.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106b] gi|254186230|ref|ZP_04892748.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pasteur 52237] gi|254194496|ref|ZP_04900928.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei S13] gi|254265540|ref|ZP_04956405.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710a] gi|254301278|ref|ZP_04968722.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 406e] gi|254359267|ref|ZP_04975539.1| tRNA pseudouridine synthase A [Burkholderia mallei 2002721280] gi|62901257|sp|Q62AJ2|TRUA_BURMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123597008|sp|Q3JKH3|TRUA_BURP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228685|sp|A1UZ38|TRUA_BURMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228686|sp|A3P7N2|TRUA_BURP0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228687|sp|A3NM70|TRUA_BURP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52422144|gb|AAU45714.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 23344] gi|76582378|gb|ABA51852.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710b] gi|121225390|gb|ABM48921.1| tRNA pseudouridine synthase A [Burkholderia mallei SAVP1] gi|126223042|gb|ABN86547.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 668] gi|126229796|gb|ABN93209.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106a] gi|134250323|gb|EBA50403.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 305] gi|148028454|gb|EDK86414.1| tRNA pseudouridine synthase A [Burkholderia mallei 2002721280] gi|157811288|gb|EDO88458.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 406e] gi|157933916|gb|EDO89586.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pasteur 52237] gi|169651247|gb|EDS83940.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei S13] gi|225932107|gb|EEH28107.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pakistan 9] gi|235000507|gb|EEP49931.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei MSHR346] gi|242135618|gb|EES22021.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106b] gi|254216542|gb|EET05927.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710a] Length = 270 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+++ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERSLAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFLP--PTVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAGRAGWVHTPLDVDAMREAAAHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ S+ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLAEVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|323529192|ref|YP_004231344.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1001] gi|323386194|gb|ADX58284.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1001] Length = 270 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVQTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + + N++L T+S+ + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELERADISWVRGTNSFLP--KTVSVQWAKPMPEAFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + SLD + MR AA HL+G HDF+ FRS CQA +P++ + D+ Sbjct: 119 VRSPMLAARAGWVHASLDIDAMREAAVHLIGEHDFSAFRSSQCQAKTPVKHLYQIDIQQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L+ +DR+ P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNVMGCLVYIGKGRRPVQWMAEVLEGRDREWAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|121998585|ref|YP_001003372.1| tRNA pseudouridine synthase A [Halorhodospira halophila SL1] gi|121589990|gb|ABM62570.1| tRNA pseudouridine synthase A [Halorhodospira halophila SL1] Length = 266 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 132/249 (53%), Gaps = 12/249 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R +++EY+G+G+ GWQRQ + S+Q ++E A+ + V V AGRTD+GVHA QV Sbjct: 9 RIALVLEYDGTGFSGWQRQDDAPSVQEALEGAVSRIANHPVAVVCAGRTDAGVHAAAQVV 68 Query: 63 HFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD + WV L ++ +T+S+ + VD FHAR+ A RR Y Y + Sbjct: 69 HFDTTASRPLHAWV-------LGTNAQLPETVSVRSAHAVDADFHARYQAQRRGYRYVFL 121 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+A AL + R LD M AAQ LVG HDF+ FR+ CQA +R + DV Sbjct: 122 CRRARPALLRHRVAWTHHELDEGRMHRAAQALVGEHDFSAFRAAACQAPHAVREVYRLDV 181 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G L+ I + A +F+H +R+ G+L VG G+ L A DR G AP Sbjct: 182 HRHGELLFIDIEANAFVHHMVRNIAGTLMAVGTGEQPEHWPAGLLAAGDRTRSGMTAPAA 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLTRVVY 250 >gi|99034196|ref|ZP_01314273.1| hypothetical protein Wendoof_01000930 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 166 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 115/167 (68%), Gaps = 2/167 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE V ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E+ + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKEFELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 AP ALE G W + LD MR AA+HL+G+HD ++FRS CQA++ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCQAAN 166 >gi|114775677|ref|ZP_01451245.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1] gi|114553788|gb|EAU56169.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1] Length = 267 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 138/247 (55%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + +E++G + GWQ+Q+N +S+Q ++ A+ V GE + V AGRTD+GVHA + Sbjct: 11 RIALALEFDGRPFHGWQQQENATSVQACLQDALQAVEGEPLTVVAAGRTDAGVHAEALLV 70 Query: 63 HFDL-VREW--VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D+ W P N++L D I ++ + V FHARF+ RSY Y+I R Sbjct: 71 HADVSAARWQRSPRAYLHGCNSHLP--DEIRVVGVRAVAADFHARFACRGRSYRYQIWNR 128 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL++ R W +P+SL+ E M+ AA H +GRHDF+ R+ CQA+ + I ++ Sbjct: 129 NTASALQRWRHWWMPRSLNIEAMQGAAVHCLGRHDFSALRAAGCQAAHAEKHIRSLEIVQ 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I I V A +FL+ +R+ VG+L VG GK + D L ++DR+ AP GL Sbjct: 189 HGHCIHIHVSADAFLYHMVRNLVGNLVEVGAGKRSPDDFAALLASRDRQLGAATAPAHGL 248 Query: 240 YFDSVEY 246 YF Y Sbjct: 249 YFTDAWY 255 >gi|254228474|ref|ZP_04921900.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|262393647|ref|YP_003285501.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|151939062|gb|EDN57894.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|262337241|gb|ACY51036.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] Length = 264 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD + R+ ++ + A + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVTRK----MVAWTMGANANMPSDIAVRWAKEVPDDFHARFSATARRYRYIIFNH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 117 ALRPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFTSFRAAHCQSRSPFRNLMHLNVTR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + I + A +F+H +R+ GSL VG G+ + ++ L+A+DRK G A EGL Sbjct: 177 HGNYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRKLAGATAKAEGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YLVDVDY 243 >gi|158520483|ref|YP_001528353.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3] gi|158509309|gb|ABW66276.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3] Length = 252 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 135/243 (55%), Gaps = 5/243 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ + GWQ QK+ ++QG I A+ +TG+ V V G+GRTD+GVHA+ QVA F Sbjct: 7 LIIEYDGACFHGWQIQKDLRTVQGEITGALASITGQAVSVIGSGRTDAGVHAMAQVASFI 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P L KALN L + I I + V FHAR+SA ++Y YRI+ R P AL Sbjct: 67 CDTRLEPGTLQKALNGIL--AKDIVIHDCREVSLNFHARYSAKSKTYRYRILNRNLPAAL 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHFDVNSFGNL 183 +G AW I K LD M A H++GRHDF++F +S +R T F++ G L Sbjct: 125 YRGYAWHIKKPLDLGAMTAALPHILGRHDFSSFEGTGSPKASSVRHVTAATFNMAEDGYL 184 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + A FL +R+ VG+L VG GK T + L A+DR G AP GL+ Sbjct: 185 -AFEITADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDRSRAGATAPGHGLFLVR 243 Query: 244 VEY 246 V Y Sbjct: 244 VNY 246 >gi|300691102|ref|YP_003752097.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum PSI07] gi|299078162|emb|CBJ50805.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum PSI07] Length = 274 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 145/252 (57%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFAGVELPTIVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V H D LVR+ P + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 VVHLDTDLVRD--PFSWVRGTNAFLP--PTVAVRWAQEVPEDFHARFSAHRRTYYYALVS 116 Query: 119 --RQAPLALEKGRAWLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +APL K ++P +SLD M+ AAQ LVG HDF++FR+ CQA SP++T+ Sbjct: 117 GPTRAPLLGGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTMYS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + +R+ +FLH +R+ +G L +G GK + + L A+DRK P Sbjct: 177 AEARGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPVAWMGEVLAARDRKVAAPTF 236 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 237 MPDGLYLAEVGY 248 >gi|91223605|ref|ZP_01258870.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01] gi|269966027|ref|ZP_06180119.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 40B] gi|91191691|gb|EAS77955.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01] gi|269829423|gb|EEZ83665.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 40B] Length = 264 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 134/247 (54%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD + R+ ++ + A + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVTRK----MVAWTMGANANMPSDIAVRWAKEVSDDFHARFSATARRYRYIIFNH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + LD + M A Q L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 117 ALRPGILNSGVSHYHGELDEKKMHEAGQFLLGENDFTSFRAAHCQSRSPFRNLMHLNVTR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + I + A +F+H +R+ GSL VG G+ + ++ L+A+DRK G A EGL Sbjct: 177 HGNYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRKLAGATAKAEGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YLVDVDY 243 >gi|167577247|ref|ZP_02370121.1| tRNA pseudouridine synthase A [Burkholderia thailandensis TXDOH] Length = 270 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFLP--STVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD + MR AA+HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAARAGWVHTPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|307726601|ref|YP_003909814.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003] gi|307587126|gb|ADN60523.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003] Length = 270 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 136/248 (54%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ F T VV AGRTD+GVH L Sbjct: 1 MKRIALGVQYDGTAFCGWQSQPHGNTVQDELERALREFAQTPVHTVV--AGRTDTGVHGL 58 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD E V + N++L TIS+ + + FHARFSA R+Y Y + Sbjct: 59 GQVVHFDTELERADVSWVRGTNSFLP--KTISVQWAKPMPEAFHARFSAFERTYYYVLYV 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + GRA + +LD + M AA HL+G HDF+ FRS CQ+ +P++ + D+ Sbjct: 117 HPVRSPMLAGRAGWVHAALDIDAMHAAAAHLIGEHDFSAFRSSQCQSKTPVKHLYQIDIQ 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + R A +FLH +R+ +G L +G G+ + + L +DR+ P P+G Sbjct: 177 QHGDFVHFRFRANAFLHHMVRNVMGCLVYIGKGRRPVQWMAEVLAGRDREWAAPTFMPDG 236 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 237 LYLAQVGY 244 >gi|154505512|ref|ZP_02042250.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149] gi|153794170|gb|EDN76590.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 137/247 (55%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +++ + +A+ +TGE + V GA RTDSGVHAL Sbjct: 1 MKRLKLTVAYDGTNYCGWQIQPNGITVEEVLNRALRKLTGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + ALN ++ D I ++ V +H R+ +++Y Y I+ + Sbjct: 61 VAVFDSETSIPPERISYALNQ--RLPDDIVVIRSEEVSADWHPRYCNSKKTYEYHILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + LD E M+ AAQ+LVG HDF +F ++ +RTI D+ Sbjct: 119 IPDPTRRLTRYFVSFDLDIEKMKKAAQYLVGTHDFVSFCNVRTDVEDTVRTIYSLDILPV 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R VG+L VG G +T +++ L+A++RK G APP+GL+ Sbjct: 179 GDEITIRIQGNGFLYNMVRIIVGTLVRVGRGFYTPEQVQEILEAKNRKAAGVTAPPQGLF 238 Query: 241 FDSVEYS 247 +EY Sbjct: 239 LVGIEYE 245 >gi|21672480|ref|NP_660547.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091459|sp|Q8K9U4|TRUA_BUCAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21623097|gb|AAM67758.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 263 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 137/244 (56%), Gaps = 3/244 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 ++ + +EY+GS Y GWQ QK S+IQ IEKA+ + V V AGRTDSGVH++ QV Sbjct: 8 KFALGVEYDGSYYHGWQSQKGLSTIQSEIEKALSKIANHQVNVICAGRTDSGVHSIGQVI 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF + +N+YL S IS+ + V + F+AR+SAI RSY Y I + Sbjct: 68 HFTSISFRSDFSWIVGVNSYL--SKNISVKWIKEVSENFNARYSAISRSYRYIIYNHKCR 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + R+ + K L+ + M AQ L+G HDF++FRS CQ+ SP RTI ++ N Sbjct: 126 SAIFRNRSNHVYKELNVDKMYFEAQSLLGEHDFSSFRSSGCQSRSPFRTITDLNIRRLKN 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ I + A SFL+ +R+ VGSL + D ++K L +DR GP GLY Sbjct: 186 LVIIDITANSFLYHMVRNIVGSLIQINDNT-KKNYIKKILDKKDRNYAGPTVSARGLYLF 244 Query: 243 SVEY 246 V+Y Sbjct: 245 FVKY 248 >gi|254786497|ref|YP_003073926.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901] gi|237685680|gb|ACR12944.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901] Length = 286 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/252 (39%), Positives = 141/252 (55%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY G+ + G+Q+Q + ++Q +E+AI V E V + AGRTD+GV A Sbjct: 22 MQRVALGVEYLGASFRGFQKQASTPDTVQARLERAISAVAAEEVTLVCAGRTDAGVSASG 81 Query: 60 QVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD + + L A+L+ + D + + V FHARFSA+ R+Y Y Sbjct: 82 QVIHFD-------TLSSRPLKAWLQGVNTHLPDAVRVTWAMPVSFHFHARFSALSRTYHY 134 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I T AL + SLD E M++AA+ L+G HDF++FR+ CQA SP+R I Sbjct: 135 WIQTEPVRSALFSQQLTWTGHSLDVERMQLAAESLLGEHDFSSFRAAQCQAHSPVREIQA 194 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +GNLI RV A +FLH +R+ +GSL LVG G + + +E+ L A+DR P A Sbjct: 195 VSFERYGNLILFRVRANAFLHHMVRNLIGSLMLVGRGLQSPSWIEQLLAARDRTLAAPTA 254 Query: 235 PPEGLYFDSVEY 246 P GL +VEY Sbjct: 255 APWGLSLVAVEY 266 >gi|302876500|ref|YP_003845133.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307687172|ref|ZP_07629618.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302579357|gb|ADL53369.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 244 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 141/242 (58%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I+EY+G+ Y GWQ+QKN ++QG+IEKAI +T E V + G RTDSGVHA A+F Sbjct: 6 LILEYDGTKYSGWQKQKNSVTVQGTIEKAIEAITKESVELIGCSRTDSGVHAKGYTANF- 64 Query: 66 LVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +P+ A+NA K+ + I IL+ V + FH+RF+ I ++Y Y ++ R + A Sbjct: 65 FTNSKIPIERFYIAINA--KLPEDIVILSSEEVPEDFHSRFNCIGKTYCYSVLNRVSYPA 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + + +P+ L + M+ AA+ VG +DF FR++ + +S +RTI +V G++I Sbjct: 123 MYRNYLYHVPRKLSIDEMKKAAESFVGTYDFNAFRNLGTEVASTVRTIHRIEVEEHGDII 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I V FL+ +R G+L VG G+ S ++ L+++DR G AP GL D V Sbjct: 183 NILVTGDGFLYNMVRIIAGTLVEVGLGQKRSDQIKVILESKDRNRAGKTAPARGLSLDKV 242 Query: 245 EY 246 Y Sbjct: 243 YY 244 >gi|83718190|ref|YP_438876.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] gi|167621345|ref|ZP_02389976.1| tRNA pseudouridine synthase A [Burkholderia thailandensis Bt4] gi|257141962|ref|ZP_05590224.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] gi|123753984|sp|Q2T7H3|TRUA_BURTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83652015|gb|ABC36079.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] Length = 270 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFLP--STVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD + MR AA+HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAARAGWVHTPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLESRDRGCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|241663409|ref|YP_002981769.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12D] gi|309783472|ref|ZP_07678175.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_7_47FAA] gi|240865436|gb|ACS63097.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12D] gi|308917758|gb|EFP63452.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_7_47FAA] Length = 274 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 143/252 (56%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLESALRQFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 V H D LVRE P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTDLVRE--PFSWVRGTNAFLP--PTVAVRWAQEMPEGFHARFSAHRRTYYYALTF 116 Query: 118 -TRQAPLALEKGRAWLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +APL +K ++P +SLD E M AAQ LVG HDF++FR+ CQA SP++T+ Sbjct: 117 GPTRAPLLEDKAGYVMLPPGQSLDVEAMNEAAQVLVGEHDFSSFRAAECQAKSPVKTMYS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G + +R+ +FLH +R+ +G L +G G+ + + L A+ R P Sbjct: 177 VEVRGEGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRQPVSWMGDVLAARSRVAAAPTF 236 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 237 MPDGLYLAEVGY 248 >gi|332284539|ref|YP_004416450.1| tRNA pseudouridine synthase A [Pusillimonas sp. T7-7] gi|330428492|gb|AEC19826.1| tRNA pseudouridine synthase A [Pusillimonas sp. T7-7] Length = 267 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+GS + GWQ Q G ++Q ++E A+ V AGRTD+GVHAL Q+ H D Sbjct: 5 LAYDGSSWQGWQTQPGGLTVQDTLESALAEFLNHPVGTICAGRTDTGVHALEQIVHLDTQ 64 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 P + LNA L S I++ V FHARFSA+ RSY+Y + + L Sbjct: 65 AARRPESWVRGLNALLPAS--IAVQWAKPVSDSFHARFSALSRSYVYIVRNTRVRSPLMH 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 GR + SL + MR AA+ LVG HDF++FRS CQA+SP+RT+ V G+ R Sbjct: 123 GRVGWVYHSLQLDPMRDAARRLVGEHDFSSFRSSQCQAASPVRTLQEASVEQHGDFYLFR 182 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A +FLH IR+ +G++ +G GK +++ L +DR+ P P GLY V Y Sbjct: 183 FQANAFLHHMIRNLMGAILYIGQGKQEPGWIDELLAQRDRRRAAPTFSPAGLYLSGVRY 241 >gi|229074353|ref|ZP_04207391.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18] gi|228708795|gb|EEL60930.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18] Length = 245 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITNVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 239 YLESVEF 245 >gi|303257106|ref|ZP_07343120.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47] gi|302860597|gb|EFL83674.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47] Length = 259 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G ++Q +E A+ TGE V AGRTD+ VHA QV Sbjct: 1 MRVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D + + + LN+YL ++ +V +FHARFSA R+Y Y I+ Sbjct: 61 IHLDTGADRKEISWVRGLNSYLPTE--CAVRWAKVVPDEFHARFSACSRTYEYWIVNEPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + + L+ +NM A Q LVG HDF++FR+ CQ+ +P++ I++ V G Sbjct: 119 RSPILSGRTGWVFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVKNIEYLHVIRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+IRV A +FL+ +R+ VG L VG G + + + L+A+ R+ P P GLY Sbjct: 179 RFIKIRVKANAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|163750187|ref|ZP_02157429.1| tRNA pseudouridine synthase A [Shewanella benthica KT99] gi|161330043|gb|EDQ01027.1| tRNA pseudouridine synthase A [Shewanella benthica KT99] Length = 261 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 133/247 (53%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ ++Q +E+A+ V + + VH AGRTDSGVH QV Sbjct: 1 MRVALGIEYDGSKYYGWQRQLEVDTVQAQLERALSKVANQPISVHCAGRTDSGVHGTGQV 60 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HF+ +R+ L +N + D I++ + +VD FHARFSA R Y Y I Sbjct: 61 VHFETTAIRKESAWTLGVNVN----LPDDIAVKWVKLVDDDFHARFSATARRYRYIIYNY 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + LD + M AAQH VG HDFT+FR++HCQ+ +P R + +V Sbjct: 117 HLRPGILRSGVSHYRGQLDEDKMHHAAQHFVGEHDFTSFRALHCQSKTPFRHVHEVNVTR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A +FLH +R+ VGSL +G G + L +DR + P A P GL Sbjct: 177 QGMYLCVDIKANAFLHHMVRNIVGSLIEIGLGHQNEDWIVSLLALKDRSKAAPTAKPNGL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YMVDVTY 243 >gi|195940683|ref|ZP_03086065.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4024] gi|295098046|emb|CBK87136.1| pseudouridylate synthase I [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 270 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 RIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPISVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQA 121 HFD +NA L I++ + V FHARFSA R Y Y I R Sbjct: 71 HFDTTAVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYVIYNQRLR 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L +G + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 129 PAVLSQGVTHFY-EPLDAERMQRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|238022472|ref|ZP_04602898.1| hypothetical protein GCWU000324_02380 [Kingella oralis ATCC 51147] gi|237867086|gb|EEP68128.1| hypothetical protein GCWU000324_02380 [Kingella oralis ATCC 51147] Length = 260 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 137/252 (54%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + + YNGS +FG+Q+Q G +IQ ++E A+ + GE V + AGRTD+GVHA Sbjct: 1 MTRYALTLSYNGSAFFGFQKQAAGIPTIQTALEHALAQIAGEPVAITAAGRTDTGVHATA 60 Query: 60 QVAHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD + WV + +NA+L D I++L+ V FHARF A R Y Y Sbjct: 61 QVVHFDSHATRPLTAWV-----RGVNAHLP--DGIAVLHAQAVAPDFHARFDACGRHYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + L GRA LD M+ AA L+G HDF++FR+ CQA SP++T+ Sbjct: 114 LLQSAPVRSPLLVGRAGWTHYPLDMAAMQKAAALLLGEHDFSSFRAAECQAKSPVKTVYA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + I+I A +FLH +R+ VG+L VG G+ + + AQ R P Sbjct: 174 IAFSGCPSFIKIDFHANAFLHHMVRNIVGALVYVGCGRLAVGEFAEMFAAQSRLTAPPTF 233 Query: 235 PPEGLYFDSVEY 246 +GLYF V+Y Sbjct: 234 MADGLYFTGVDY 245 >gi|330820903|ref|YP_004349765.1| Pseudouridylate synthase [Burkholderia gladioli BSR3] gi|327372898|gb|AEA64253.1| Pseudouridylate synthase [Burkholderia gladioli BSR3] Length = 277 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 138/248 (55%), Gaps = 8/248 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R + I+Y+G+ + GWQ Q +G ++Q +E KA LV + VV AGRTD+GVH L Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDELERALKAFALVPLQTVV---AGRTDTGVHGL 57 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 58 GQVVHFDTDLDRSDFSWVRGTNAFLP--STVAVQWAKPMPDSFHARFAAFERTYYYALYV 115 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + RA + LD E MR AA+HL+G HDF++FRS CQ+ +P++ + D+ Sbjct: 116 HPVRSPMLASRAGWVHTPLDIEAMREAARHLIGEHDFSSFRSSECQSKTPVKHLYQIDIR 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ I R A +FLH +R+ +G L VG G++ + + + L A++R+ P P+G Sbjct: 176 ASGSFIHFRFRANAFLHHMVRNLMGCLIAVGRGRYPADWMAEVLAARNRERAAPTFAPDG 235 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 236 LYLAHVGY 243 >gi|228995804|ref|ZP_04155464.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17] gi|229003424|ref|ZP_04161244.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4] gi|228757802|gb|EEM07027.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4] gi|228763965|gb|EEM12852.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17] Length = 245 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQR N ++IQG IE + +TG + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGGRYKGWQRLGNNDNTIQGKIESVLSEMTGREIEIIGCSRTDAGVHALH 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ +V ++FHAR+++ ++YLY+I Sbjct: 61 QVANFKIDENLPELKVKKYLNQYL--PNDISITDVELVSERFHARYNSKSKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ENM+ AAQ+L+G HDFT F + + S +R I DV Sbjct: 119 EHTNPFMRKYSMHVGKKLNIENMQKAAQYLIGSHDFTAFSNAKSKKKSMVREIYMLDVVE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 SEGFIQIRVNGNGFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQINCLADASGL 238 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 239 YLEKVDF 245 >gi|323499722|ref|ZP_08104688.1| tRNA pseudouridine synthase A [Vibrio sinaloensis DSM 21326] gi|323315224|gb|EGA68269.1| tRNA pseudouridine synthase A [Vibrio sinaloensis DSM 21326] Length = 264 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 136/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ+ S+Q ++EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQQEVKSVQEALEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L SD +++ V + FHARFSA R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANLP-SD-VAVRWAKEVPEDFHARFSATARRYRYIIFNSAL 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSSGVS-HYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + A +F+H +R+ GSL VG G+ +E LQA+DRK G A EGLY Sbjct: 178 NQYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEWIEWLLQAKDRKLAGATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|83645231|ref|YP_433666.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396] gi|83633274|gb|ABC29241.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396] Length = 283 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 132/246 (53%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+GS Y GWQ Q +G S+Q +E A+ V V V AGRTD+GVHA+ QV Sbjct: 23 RVALVLGYDGSRYHGWQAQNSGVPSVQAEVESALAKVADHPVSVVCAGRTDAGVHAVNQV 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ P +N +L +S+ V + FHAR++A RSY Y I Sbjct: 83 VHFETKALRSPYSWAMGVNHFLPAD--VSVSWAGAVPEDFHARYTATSRSYRYVIYNHPI 140 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L W + LD E+M A HL+G +DF+ FR CQ+ SP R + +V+ F Sbjct: 141 RPAWLNNSVTWNY-RPLDVESMSAAGAHLIGENDFSAFRGSDCQSKSPFRNLTRLEVSRF 199 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ I V A +FLH +R+ G+L VG GK S + L ++ R + G APP GLY Sbjct: 200 GDMVVIEVEANAFLHHMVRNISGTLMAVGTGKKPSDWVADVLASKKRSKAGVTAPPFGLY 259 Query: 241 FDSVEY 246 SV Y Sbjct: 260 LTSVTY 265 >gi|71906507|ref|YP_284094.1| tRNA pseudouridine synthase A [Dechloromonas aromatica RCB] gi|123774503|sp|Q47HQ7|TRUA_DECAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71846128|gb|AAZ45624.1| tRNA pseudouridine synthase [Dechloromonas aromatica RCB] Length = 262 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+G+ GWQ Q G ++Q ++E A+ V G V V AGRTD+GVHA QV Sbjct: 1 MRVALGIEYCGTGFHGWQSQAGGGTVQDALEAALGEVAGVPVGVLCAGRTDAGVHATHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + +N++L + +++ V + FHARFSA R Y Y ++ R Sbjct: 61 AHFDAPVDRPLTAWVRGVNSHL--PEGVAVRWAQPVAEDFHARFSARGRRYRYLLLNRPQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L +GR L+ E M+ A L+G HDF+ FR+ +CQA SP++ + +V G Sbjct: 119 RPGLWQGRVGWFHWPLELEAMQEACLRLLGEHDFSAFRAANCQAKSPVKHMSRAEVRQCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+ A +FLH +R+ VG+L +G G +E LQ +DRK P P+GLYF Sbjct: 179 NMFVFDFEASAFLHHMVRNLVGTLVYIGKGTQQPDWIEALLQTKDRKLAAPTFSPDGLYF 238 Query: 242 DSVEYS 247 Y Sbjct: 239 RGPVYE 244 >gi|187929218|ref|YP_001899705.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12J] gi|238689527|sp|B2U6Z1|TRUA_RALPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187726108|gb|ACD27273.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12J] Length = 274 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 143/252 (56%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q ++E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDALESALRQFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 V H D LVRE P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTDLVRE--PFSWVRGTNAFLP--PTVAVRWAQEMPEDFHARFSAHRRTYYYALTF 116 Query: 118 -TRQAPLALEKGRAWLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +APL +K ++P +SLD M AAQ LVG HDF++FR+ CQA SP++T+ Sbjct: 117 GPTRAPLLEDKAGYVMLPPGQSLDVAAMNEAAQVLVGEHDFSSFRAAECQAKSPVKTMYS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G + +R+ +FLH +R+ +G L +G G+ + + L A+ R P Sbjct: 177 IEVRGEGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRQPVSWMGDVLAARSRVAAAPTF 236 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 237 MPDGLYLAEVGY 248 >gi|325266500|ref|ZP_08133177.1| tRNA pseudouridine synthase A [Kingella denitrificans ATCC 33394] gi|324981943|gb|EGC17578.1| tRNA pseudouridine synthase A [Kingella denitrificans ATCC 33394] Length = 265 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 140/245 (57%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+GS +FGWQ+Q G +++Q ++E A+ + GE V V AGRTD+GVHA QV Sbjct: 8 RYALTLAYDGSRFFGWQKQAEGVATVQAALEHALSQIAGEPVSVIAAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + +NA+L +++ I D FHARF A R Y Y + + Sbjct: 68 VHFDSRADRPLSAWVRGVNAHLP--QGVAVHKAQIADSAFHARFDASGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L GRA +L+ + MR AAQ LVG HDF++FR+ CQA SP++T+ + G Sbjct: 126 RSPLLYGRAGWTHYALNDDAMRQAAQLLVGEHDFSSFRAAQCQAKSPVKTMYAVHLQRTG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+++ + A +FLH +R+ +G+L VG G+ + + ++ + R P P+GLY Sbjct: 186 SLLKLDLHANAFLHHMVRNIMGALVYVGCGRLSVAQFGELIETRSRLYAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|331000940|ref|ZP_08324577.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT 11859] gi|329569899|gb|EGG51656.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT 11859] Length = 259 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G ++Q +E A+ TGE V AGRTD+ VHA QV Sbjct: 1 MRVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D + + + LN+YL ++ +V +FHARFSA R+Y Y I+ Sbjct: 61 IHLDTGADRKEISWVRGLNSYLPTE--CAVRWAKVVPDEFHARFSACSRTYEYWIVNEPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + + L+ +NM A Q LVG HDF++FR+ CQ+ +P++ I++ V G Sbjct: 119 RSPILSGRTGWVFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVKNIEYLHVIRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+IRV A +FL+ +R+ VG L VG G + + + L+A+ R+ P P GLY Sbjct: 179 RFIKIRVKADAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|302784784|ref|XP_002974164.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii] gi|300158496|gb|EFJ25119.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii] Length = 321 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/277 (36%), Positives = 151/277 (54%), Gaps = 33/277 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + IEY G+ + GWQRQ+ ++QG++E A G+ V G+ RTD+GVHALR V Sbjct: 29 RYLVGIEYIGTRFSGWQRQEGVRTVQGTLEDAFSSFMGQSVSTTGSSRTDAGVHALRNVF 88 Query: 63 HFDLVR-----------EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 H DL R P ++ +A+N +L + S + +++ V FHARF A R Sbjct: 89 HVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPDFHARFRAKER 148 Query: 111 SYLYRIITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YRI+ +L E+ RAW + + L+ M+ A Q L+G HDF++FR+ CQA+SP+ Sbjct: 149 TYYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAASPV 208 Query: 170 RTIDHFDV------------------NSFGNLIEIRVVAR--SFLHTQIRSFVGSLKLVG 209 +T++ + +S +L V AR SFL+ Q+R VG+LK VG Sbjct: 209 KTLEELSIRETVSWPHLLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVG 268 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GK T+ D+ K L+ + P+AP GL+ V+Y Sbjct: 269 AGKRTAEDVRKILEGRSISLALPMAPASGLFLADVKY 305 >gi|71892269|ref|YP_278003.1| tRNA pseudouridine synthase A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123775274|sp|Q492H3|TRUA_BLOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71796375|gb|AAZ41126.1| tRNA pseudouridine synthase A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 261 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y GWQRQ++ SIQ IE AI +T E V V AGRTDSGVHAL Q Sbjct: 1 MQKLALGIEYDGSWYCGWQRQRDAPSIQSYIENAIKKITSESVTVFCAGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +N YL +I + +V+K FHARFSAI R Y Y I Sbjct: 61 VVHFETYSRRSKSAWTLGMNRYLP--SSICVRWARLVNKDFHARFSAISRRYCYIINNNC 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + W K LD M AAQ+L+G +DF++FR+ CQ+ S R + H + Sbjct: 119 IRSALLFRKTWHYKKYLDINKMCDAAQYLLGENDFSSFRAAGCQSYSARRKLYHIRIIRK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A SF++ +R+ VGSL VG G+ + + L+ +R G AP GLY Sbjct: 179 GQCIVIDIKANSFMYRMVRNIVGSLVKVGCGEQPEKWIAELLENCNRSLAGVTAPASGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LVEVKY 244 >gi|156933088|ref|YP_001437004.1| tRNA pseudouridine synthase A [Cronobacter sakazakii ATCC BAA-894] gi|166228697|sp|A7MH65|TRUA_ENTS8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156531342|gb|ABU76168.1| hypothetical protein ESA_00898 [Cronobacter sakazakii ATCC BAA-894] Length = 270 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/248 (39%), Positives = 140/248 (56%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA Q Sbjct: 9 VVKIALGIEYDGSKYYGWQRQQEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHATGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-R 119 V HF+ +NA L I++ + V +FHARFSA R Y Y I R Sbjct: 69 VVHFETTAIRKDAAWTLGVNANL--PGDIAVRWVKDVPAEFHARFSATARRYRYVIYNHR 126 Query: 120 QAPLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P L +G + +P LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V Sbjct: 127 LRPAVLSQGVTHYHLP--LDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNLMHINVE 184 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 FG I + + A +F+H +R+ VGSL +G G + + + L A+DR A EG Sbjct: 185 RFGAYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRTLAAATAKAEG 244 Query: 239 LYFDSVEY 246 LY SV+Y Sbjct: 245 LYLVSVDY 252 >gi|229101230|ref|ZP_04231994.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28] gi|228682198|gb|EEL36311.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28] Length = 245 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITNVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYMLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +S+E+ Sbjct: 239 YLESIEF 245 >gi|53803316|ref|YP_114909.1| tRNA pseudouridine synthase A [Methylococcus capsulatus str. Bath] gi|62901252|sp|Q604P1|TRUA_METCA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|53757077|gb|AAU91368.1| tRNA pseudouridine synthase A [Methylococcus capsulatus str. Bath] Length = 271 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 132/250 (52%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSG+ GWQ Q +IQ +E+A+ V V V AGRTD+GVHA+ QV Sbjct: 1 MRIALGIEYDGSGFAGWQWQNGKRTIQAEVERALSRVADAPVRVTCAGRTDAGVHAIEQV 60 Query: 62 AHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AHFD R W+ L A + + + IL + + FHAR SAI R Y Y I Sbjct: 61 AHFDTESRRSERSWL-------LGANTALPEDVRILWVRETEPHFHARLSAIARYYRYEI 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + R AL + LD E MR A +LVG HDF++FR+ CQ+ SP R + Sbjct: 114 LNRPMRSALRPRQFTWCHAPLDVERMREGAAYLVGEHDFSSFRAQQCQSRSPFRRVHFLH 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + + + A +F+H +R+ G L VG GK + + L +DR + G APP Sbjct: 174 VRREGERVIMEIAANAFVHHMVRNIAGVLMAVGAGKRDPAWVGELLAMRDRAKGGVTAPP 233 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 234 DGLYLGGVCY 243 >gi|77164531|ref|YP_343056.1| pseudouridylate synthase [Nitrosococcus oceani ATCC 19707] gi|254433109|ref|ZP_05046617.1| tRNA pseudouridine synthase A [Nitrosococcus oceani AFC27] gi|123594636|sp|Q3JCC0|TRUA_NITOC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76882845|gb|ABA57526.1| Pseudouridylate synthase [Nitrosococcus oceani ATCC 19707] gi|207089442|gb|EDZ66713.1| tRNA pseudouridine synthase A [Nitrosococcus oceani AFC27] Length = 259 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 135/250 (54%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ QK ++Q ++E+A+ V E V V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGSNFSGWQSQKGVRTVQATLEQALSAVANEPVTVITAGRTDAGVHAAAQV 60 Query: 62 AHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD L WV + ++IL V++ FHARFSAI R Y Y I Sbjct: 61 VHFDTATFRLEHNWV-------FGGNANLLPEVAILWAQPVNEAFHARFSAIARHYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + R A A+ R + L M+ A LVG HDF++FR+ CQA SP+R + + + Sbjct: 114 LNRGARPAIANRRVTWYCQPLSVTKMKEAGAFLVGEHDFSSFRAKACQAKSPVRNVHYLE 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ I I + A +FLH +R+ G L +G G+ E+ LQA+ R G A P Sbjct: 174 VTRQGDWIVIDISANAFLHHMVRNIAGVLMAIGKGEQPPRWAEEVLQARCRAVGGVTARP 233 Query: 237 EGLYFDSVEY 246 +GLY V+Y Sbjct: 234 DGLYLVRVDY 243 >gi|237748866|ref|ZP_04579346.1| tRNA pseudouridine synthase A [Oxalobacter formigenes OXCC13] gi|229380228|gb|EEO30319.1| tRNA pseudouridine synthase A [Oxalobacter formigenes OXCC13] Length = 261 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 132/248 (53%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ + GWQ Q +G ++Q +++AIF T + AGRTD+GVHA Q Sbjct: 1 MKRIALGIEYDGTNWRGWQTQPDGMTVQDQLQEAIFRFTRTRISTMCAGRTDAGVHASEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTIS-ILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H D + +PV + +NAYL S + + FHAR SA+ R Y Y I Sbjct: 61 VVHLDTELDRLPVSWVRGVNAYLPSSIAVRWACEVPGGKDGFHARSSAMARRYRYLIYNS 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L K RA + K LD M+ A L+G HDF+ FR+ CQ+ +P++T+ D+ Sbjct: 121 PVRSPLWKNRAGWVFKPLDIGLMQKGAGLLLGEHDFSAFRAAECQSITPVKTVKRIDIEK 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GNLI A +FLH +R+ VGSL +G G +++ L A+DR P P+GL Sbjct: 181 QGNLIVFTFEANAFLHHMVRNIVGSLVYIGKGNHPPEWMKQLLDAKDRSLAAPTFMPDGL 240 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 241 YLSRVHYE 248 >gi|148977676|ref|ZP_01814237.1| tRNA pseudouridine synthase A [Vibrionales bacterium SWAT-3] gi|145963044|gb|EDK28313.1| tRNA pseudouridine synthase A [Vibrionales bacterium SWAT-3] Length = 264 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 138/246 (56%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANA--NMPKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSHSPWRNMIHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 178 GHYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEWIKWLLEAKDRKLAGATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|228989617|ref|ZP_04149601.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442] gi|228770154|gb|EEM18734.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQR N ++IQG IE + +TG + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGGRYKGWQRLGNNDNTIQGKIESVLSEMTGREIEIIGCSRTDAGVHALH 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ ++ ++FHAR+++ ++YLY+I Sbjct: 61 QVANFKIDENLPELKVKKYLNQYL--PNDISITDVELISERFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ENM+ AAQ+L+G HDFT F + + S +R I DV Sbjct: 119 EHTNPFMRKYSMHVGKKLNIENMQKAAQYLIGSHDFTAFSNAKSKKKSMVREIYMLDVVE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 SEGFIQIRVNGNGFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQINCLADASGL 238 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 239 YLEKVDF 245 >gi|304388653|ref|ZP_07370715.1| tRNA pseudouridine synthase A [Neisseria meningitidis ATCC 13091] gi|304337399|gb|EFM03571.1| tRNA pseudouridine synthase A [Neisseria meningitidis ATCC 13091] Length = 265 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|170718977|ref|YP_001784140.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336] gi|189030135|sp|B0USP1|TRUA_HAES2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168827106|gb|ACA32477.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336] Length = 269 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/252 (39%), Positives = 135/252 (53%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ N +S+Q +E A+ V E ++ AGRTDSGVHA QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQANVTSVQEKLESAVSFVANEFCQIYCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LNA L I++ +V + FHARFSA R Y Y I Sbjct: 61 VHFDTKAIRSEKAWTFGLNANLPAD--IAVRWAKVVSEDFHARFSATARRYRYLIYNH-- 116 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 PL R+ L P +LD M A Q+L+G HDF++FR+ CQ+++P R I H Sbjct: 117 PL-----RSALFPTGVTHHHVALDHHLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V N I + + A +F+H +R+ VGSL +G GK ++ L +DR P A Sbjct: 172 LHVFRQANYIIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 P+GLY V+Y Sbjct: 232 KPDGLYLVEVKY 243 >gi|198283837|ref|YP_002220158.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666580|ref|YP_002426474.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248358|gb|ACH83951.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518793|gb|ACK79379.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 23270] Length = 271 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + +EY+G+G+ GWQRQ + S+QG +E A+ V + V AGRTD+GVHAL QV Sbjct: 11 RWALGLEYDGNGFCGWQRQLDQDSVQGVVEAALSRVAQCPISVVVAGRTDTGVHALCQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD P + N L +++ +V FHARFSA R Y Y I+ R+ Sbjct: 71 HFDSPVLRRPEAWVRGANTALPAG--VALRWARVVPDSFHARFSATARRYRYVILNRREK 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AL + I LD E M+ AAQ L+G HDF+ FR+ CQA SP+R + V G+ Sbjct: 129 SALWRNHTAWIYSPLDVEAMQAAAQTLLGTHDFSAFRAAACQAKSPVRNLCQLRVVRRGD 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI + A FLH +R+ VG L +G + L ++DR G APP GLYF Sbjct: 189 LIAVDAEANGFLHHMVRNLVGVLIAIGKADRPVDWAAEVLASRDRCRAGVTAPPGGLYFV 248 Query: 243 SVEY 246 + Y Sbjct: 249 APRY 252 >gi|254804153|ref|YP_003082374.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha14] gi|254667695|emb|CBA03553.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha14] Length = 265 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGESVATTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTAAARPQQAWIRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRQAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|218767391|ref|YP_002341903.1| tRNA pseudouridine synthase A [Neisseria meningitidis Z2491] gi|25009506|sp|Q9JWF1|TRUA_NEIMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121051399|emb|CAM07691.1| tRNA pseudouridine synthase [Neisseria meningitidis Z2491] Length = 265 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|295109363|emb|CBL23316.1| pseudouridylate synthase I [Ruminococcus obeum A2-162] Length = 246 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + A+ + GE + + GA RTD+GVHAL Sbjct: 1 MKRVGLVVAYDGTNYSGWQIQPNGITIQGVLNDALSDLLGEKIEIMGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN ++ + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTNTRIPGEKISYALNQ--RLPEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD E MR A +L+GRHDF +F Q S +RTI DV Sbjct: 119 FPVPTERLYSYFYHYKLDIEKMREATSYLIGRHDFASFCGTGAQVKSTVRTITGIDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++K L A DR GP AP GL Sbjct: 179 GDIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|167840379|ref|ZP_02467063.1| tRNA pseudouridine synthase A [Burkholderia thailandensis MSMB43] Length = 270 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q S+E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDSLEAALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L TI++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFLP--STIAVQWAKPMPDTFHARFAAYERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + LD + MR AA HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAGRTGWVHTPLDIDAMREAAGHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L L+++DR P PEGLY Sbjct: 179 DFIHFRFRASAFLHHMVRNLMGCLVAVGRGRYPASWLADVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|186473191|ref|YP_001860533.1| tRNA pseudouridine synthase A [Burkholderia phymatum STM815] gi|238691329|sp|B2JQE6|TRUA_BURP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|184195523|gb|ACC73487.1| tRNA pseudouridine synthase A [Burkholderia phymatum STM815] Length = 267 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 133/248 (53%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R + I+Y+G+ + GWQ Q +G ++Q +E+A+ F +T VV AGRTD+GVH L Sbjct: 1 MTRIALGIQYDGAAFCGWQSQPHGKTVQDELERALREFALTPLQTVV--AGRTDTGVHGL 58 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 59 GQVVHFDTELDRAEFSWVRGTNAFLP--STVAVQWAKPMPDAFHARFSAFERTYYYALYV 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + RA I LD + MR AA L+G HDF+ FRS CQ+ +P++ + D+ Sbjct: 117 HPVRSPMLASRAGWIHTPLDVDAMREAAACLIGEHDFSAFRSSECQSKTPVKHLYQIDIR 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I R A +FLH +R+ +G L VG G++ + L + L +DR P P+G Sbjct: 177 PQGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPAAWLSEVLHGRDRNRAAPTFMPDG 236 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 237 LYLAQVGY 244 >gi|296159699|ref|ZP_06842522.1| tRNA pseudouridine synthase A [Burkholderia sp. Ch1-1] gi|295890143|gb|EFG69938.1| tRNA pseudouridine synthase A [Burkholderia sp. Ch1-1] Length = 270 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVQTIVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTEIDRADVSWVRGTNSFLP--KTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + +LD + M+ AA HL+G HDF+ FRS CQ+ +PI+ + DV Sbjct: 119 VRSPMLATRAGWVHTALDVDAMQAAAAHLIGEHDFSAFRSSQCQSKTPIKHLHQIDVRQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L ++DR P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNLMGCLVYIGRGRRPVEWMAEVLASRDRDFAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|189220286|ref|YP_001940926.1| pseudouridylate synthase [Methylacidiphilum infernorum V4] gi|259550415|sp|B3E0A0|TRUA_METI4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189187144|gb|ACD84329.1| Pseudouridylate synthase [Methylacidiphilum infernorum V4] Length = 255 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 145/249 (58%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ Y + + Y GSG+ GWQRQ ++Q ++E+A+ + E + V GAGRTD+GVHA Q Sbjct: 5 VVGYKLTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEPIPVEGAGRTDAGVHAKGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F R+ P +L +ALN +L DT+ + + IV ++F ARF A+ ++Y Y + Sbjct: 65 VASFAAPRKLEPEVLKRALNYHL--PDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDP 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTI-DHFDVN 178 GRAW IP+++D E M AA+ +G+H+F F S +P+RT+ D F + Sbjct: 123 VMDPFYLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVSNPGMPVKNPVRTVLDCFFLE 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+L+ V A FL+ +R+ VG+L VG G+ + +L+K + Q R E APP G Sbjct: 183 Q-GSLVFFNVKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFAAAPPWG 241 Query: 239 LYFDSVEYS 247 LY +V+Y Sbjct: 242 LYLLAVDYP 250 >gi|113461401|ref|YP_719470.1| tRNA pseudouridine synthase A [Haemophilus somnus 129PT] gi|122945393|sp|Q0I4X5|TRUA_HAES1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|112823444|gb|ABI25533.1| pseudouridylate synthetase [Haemophilus somnus 129PT] Length = 269 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 99/252 (39%), Positives = 135/252 (53%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ N +S+Q +E A+ V E ++ AGRTDSGVHA QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQANVTSVQEKLESAVSFVANEFCQIYCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LNA L I++ +V + FHARFSA R Y Y I Sbjct: 61 VHFDTKAIRSEKAWTFGLNANLPAD--IAVRWAKVVSEDFHARFSATARRYRYLIYNH-- 116 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 PL R+ L P +LD M A Q+L+G HDF++FR+ CQ+++P R I H Sbjct: 117 PL-----RSALFPTGVTHHHVALDHRLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V N I + + A +F+H +R+ VGSL +G GK ++ L +DR P A Sbjct: 172 LHVFRQANYIIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 P+GLY V+Y Sbjct: 232 KPDGLYLVEVKY 243 >gi|325131279|gb|EGC53990.1| tRNA pseudouridine synthase A [Neisseria meningitidis M6190] gi|325137309|gb|EGC59897.1| tRNA pseudouridine synthase A [Neisseria meningitidis ES14902] gi|325139358|gb|EGC61898.1| tRNA pseudouridine synthase A [Neisseria meningitidis CU385] Length = 265 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSS 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|319943971|ref|ZP_08018251.1| tRNA pseudouridine synthase A [Lautropia mirabilis ATCC 51599] gi|319742732|gb|EFV95139.1| tRNA pseudouridine synthase A [Lautropia mirabilis ATCC 51599] Length = 307 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 138/250 (55%), Gaps = 8/250 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 R+ + Y+G + GWQ+Q S+Q ++E A+ V G+ + + AGRTD+GVHAL Sbjct: 41 RWVCGVSYDGRDFCGWQKQPPVPGLAPSVQTTVEAALSAVAGQTIDIRCAGRTDAGVHAL 100 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV--DKQFHARFSAIRRSYLYRI 116 QV F + P + NA+L DT+++ + + D F ARFSA R+Y Y + Sbjct: 101 EQVIEFSTTAQRPPTAWVRGANAHLP--DTVAVRWAAPLAPDADFDARFSARERTYWYVL 158 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 I L +GRA + LD M+ AA+ ++G HDF++FR+ CQA++P+RT+ + Sbjct: 159 IDSPVAPPLWQGRAGWTHRPLDVARMQAAARSVLGTHDFSSFRASECQAATPVRTLTEWT 218 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ A +FLH +R+ VGSL VGDG+ + + + L A+ R P Sbjct: 219 VERHGAFVMMRLTANAFLHHMVRNLVGSLVYVGDGRRPVSWMAEVLAARSRSAGAPTFAA 278 Query: 237 EGLYFDSVEY 246 GLY SV Y Sbjct: 279 GGLYLASVRY 288 >gi|84394308|ref|ZP_00993032.1| tRNA pseudouridine synthase A [Vibrio splendidus 12B01] gi|84375076|gb|EAP91999.1| tRNA pseudouridine synthase A [Vibrio splendidus 12B01] Length = 264 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 138/246 (56%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANA--NMPKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSRSPWRNMIHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 178 GHYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEWIQWLLEAKDRKVAGATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|127513234|ref|YP_001094431.1| tRNA pseudouridine synthase A [Shewanella loihica PV-4] gi|166229835|sp|A3QFC4|TRUA_SHELP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126638529|gb|ABO24172.1| tRNA pseudouridine synthase A [Shewanella loihica PV-4] Length = 261 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ S+Q +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSRYFGWQRQAEVDSVQAQLERALSFVANEPISIQCAGRTDAGVHATGQV 60 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HF+ VR+ L +N + D I++ VD +FHARF+A R Y Y I Sbjct: 61 VHFETNAVRKESAWTLGVNVN----LPDDIAVRWAKDVDDEFHARFTATARRYRYMIYNH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + + P +D M AAQ L+G DFT+FR+I CQ+++P R + +V Sbjct: 117 QFRPGILRSGVSHYPGQIDEAKMHEAAQFLLGEQDFTSFRAIQCQSNTPFRCVHEVNVTR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + + A +FLH +R+ VGSL VG G+ + +++ L +DR + A P GL Sbjct: 177 QGMYICVDIKANAFLHHMVRNIVGSLLEVGYGRQPVSWIKELLALKDRTQAAATAKPNGL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YLVDVTY 243 >gi|261393361|emb|CAX50997.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I; tRNA pseudouridylate synthase I) [Neisseria meningitidis 8013] Length = 265 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSS 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 255 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 137/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMI-IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R MI IEY+G+ Y GWQ Q+N SIQ I KA+ VTGE + HG+GRTD+GVHA Q Sbjct: 1 MRNIMIEIEYDGTNYSGWQIQQNAPSIQEEIAKALKKVTGEEITTHGSGRTDAGVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F L + + ALN K+ I+IL + + FHAR+SAI + Y Y I+ Sbjct: 61 VASFQLHSKIPAERISFALNG--KLPRDITILEAKEMPEDFHARYSAIGKRYGYCIMNNT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + + +P LD + M+ A++ L+G HDF F + Q S +R ID + ++ Sbjct: 119 HGSALLRNYCYHVPYKLDLQKMKQASETLLGTHDFKGFMASGSQVKSTVRRIDEINFDTQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + FL+ +R VGSL +G GK L+ L+ Q+R+ AP +GLY Sbjct: 179 GSQIWITMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVKTAPAQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LQKVFY 244 >gi|260598738|ref|YP_003211309.1| tRNA pseudouridine synthase A [Cronobacter turicensis z3032] gi|260217915|emb|CBA32500.1| tRNA pseudouridine synthase A [Cronobacter turicensis z3032] Length = 262 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 139/248 (56%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E V V AGRTD+GVHA Q Sbjct: 1 MRKIALGIEYDGSKYYGWQRQQEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-R 119 V HF+ +NA L I++ + V +FHARFSA R Y Y I R Sbjct: 61 VVHFETTAVRKDAAWTLGVNANL--PGDIAVRWVKDVPAEFHARFSATARRYRYVIYNHR 118 Query: 120 QAPLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P L +G + +P LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V Sbjct: 119 LRPAVLSQGVTHYHLP--LDAQRMHRAAQCLIGENDFTSFRAVQCQSRTPWRNLMHINVE 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 FG I + + A +F+H +R+ VGSL +G G + + + L A+DR A EG Sbjct: 177 RFGAYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRTLAAATAKAEG 236 Query: 239 LYFDSVEY 246 LY SV+Y Sbjct: 237 LYLVSVDY 244 >gi|229159574|ref|ZP_04287588.1| tRNA pseudouridine synthase A 2 [Bacillus cereus R309803] gi|228623876|gb|EEK80688.1| tRNA pseudouridine synthase A 2 [Bacillus cereus R309803] Length = 250 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + V + K LN YL + ISI N+ V ++FHAR+++ ++YLY+I Sbjct: 66 QIANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHERFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVESMKQAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|228913175|ref|ZP_04076814.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846580|gb|EEM91593.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 250 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|302388745|ref|YP_003824566.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM 16646] gi|302199373|gb|ADL06943.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM 16646] Length = 243 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 134/242 (55%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY+G+ Y GWQ+Q N S+Q +EKAI+ +TGE V + GAGRTD+GVHA QVA+F Sbjct: 5 ILLEYDGTNYHGWQKQNNALSVQEVLEKAIYALTGERVSIIGAGRTDAGVHARGQVANFR 64 Query: 66 LVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +PV L A+N+ K+ + I++ V FHAR+SA + Y Y I P Sbjct: 65 -TNTRIPVERLPYAINS--KLPEDIAVKGAEAVPDDFHARYSAKAKVYTYSIYNAPFPSP 121 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L + ++ P LD E MR AA+ +G HDF FR+ + +R I DV G L+ Sbjct: 122 LLRRYSYFFPLPLDVEAMRRAAKAFIGVHDFAAFRASGSSVKTSVRNITRLDVKKCGKLL 181 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I V A FL+ +R G+L VG GK ++ ++++DR+ G P GL + V Sbjct: 182 TIEVEADGFLYNMVRIIAGTLLEVGTGKKDPEEIPSIIESRDRERAGVTLPAHGLCLEKV 241 Query: 245 EY 246 Y Sbjct: 242 IY 243 >gi|325133363|gb|EGC56028.1| tRNA pseudouridine synthase A [Neisseria meningitidis M13399] Length = 265 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGEAVSTIVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWIRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|257464802|ref|ZP_05629173.1| tRNA pseudouridine synthase A [Actinobacillus minor 202] gi|257450462|gb|EEV24505.1| tRNA pseudouridine synthase A [Actinobacillus minor 202] Length = 262 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 138/252 (54%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ++ S+Q +E+A+ +V V V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQESVESVQQKLEEALSIVANSPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + C NA+L D I++ V + FHARFSA R Y Y I R Sbjct: 61 VHFETEAKRPLQAWCFGTNAHL--PDDIAVKWAVEVPEDFHARFSATARRYRYIIFNR-- 116 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 K R+ ++PK LD E M A Q+L+G +DF++FR+ CQ+ +P R I H Sbjct: 117 -----KLRSAILPKGVSHYHVDLDHEKMHEAGQYLLGENDFSSFRAAKCQSHTPWRNIHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V+ G I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A Sbjct: 172 LNVSRLGAYIIVDIQANAFVHHMVRNIVGSLIEVGQGNQPPEWIKWLLEQKDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 EGLY V Y Sbjct: 232 KAEGLYLVDVHY 243 >gi|269962161|ref|ZP_06176515.1| tRNA pseudouridine synthase A [Vibrio harveyi 1DA3] gi|269833245|gb|EEZ87350.1| tRNA pseudouridine synthase A [Vibrio harveyi 1DA3] Length = 264 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQRDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANA--NMPSDIAVRWAVEVNDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPFRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|153834426|ref|ZP_01987093.1| tRNA pseudouridine synthase A [Vibrio harveyi HY01] gi|156975370|ref|YP_001446277.1| tRNA pseudouridine synthase A [Vibrio harveyi ATCC BAA-1116] gi|166229849|sp|A7MS76|TRUA_VIBHB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148869197|gb|EDL68225.1| tRNA pseudouridine synthase A [Vibrio harveyi HY01] gi|156526964|gb|ABU72050.1| hypothetical protein VIBHAR_03101 [Vibrio harveyi ATCC BAA-1116] Length = 264 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANA--NMPSDIAVRWAVEVNDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNMMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKSLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|270262840|ref|ZP_06191111.1| tRNA pseudouridine synthase A [Serratia odorifera 4Rx13] gi|270043524|gb|EFA16617.1| tRNA pseudouridine synthase A [Serratia odorifera 4Rx13] Length = 273 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ +S+Q S+E+A+ V + V AGRTD+GVHA QV Sbjct: 12 LKIALGIEYDGSRYYGWQRQQEVASVQASLEQALSKVANAPISVLCAGRTDAGVHATGQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ + +N +L I++ ++ V + FHARFSA R Y Y I R Sbjct: 72 VHFETTAQRKDAAWTMGVNTHL--PPDIAVRWVTGVAEDFHARFSATARRYRYIIYNHRY 129 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L++G LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V + Sbjct: 130 RPAVLQQGVTHFY-HPLDAERMERAAQALLGENDFTSFRAVQCQSRTPWRNVKHVKVTRY 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G + + + L +DR A EGLY Sbjct: 189 GEYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQSENWMAELLALKDRNLAAATARAEGLY 248 Query: 241 FDSVEY 246 SV+Y Sbjct: 249 LVSVDY 254 >gi|308270748|emb|CBX27358.1| tRNA pseudouridine synthase A [uncultured Desulfobacterium sp.] Length = 246 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 138/248 (55%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MI+ + + IEY+G+ + GWQRQ NG +IQG IEKAIF +T + + + GAGRTD+GVHAL Sbjct: 1 MIKNFKLTIEYDGTAFNGWQRQLNGRTIQGEIEKAIFAMTKQKIALTGAGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F P + LN+ L D I L + +K FH+R+ + + Y Y+I+ R Sbjct: 61 QVANFICDTNLEPDSFYRGLNSLLP-GDIIIKLCEQVCEK-FHSRYDSKSKLYRYKILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VN 178 P A+ + W I LD + MR A + G DF F S IRT+ + + Sbjct: 119 PLPSAIGRNYLWFIKSPLDLKAMREAVLFIAGTRDFKAFEGSGSPRKSTIRTVLRSELIE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + N+I+ + A FL +R+ VGSL VG GK D++ L ++DR++ APP G Sbjct: 179 NEDNIIQFEIEADGFLRFMVRNIVGSLISVGLGKLKPLDIKTILDSKDRRKASATAPPGG 238 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 239 LFLVKVRY 246 >gi|209518943|ref|ZP_03267753.1| tRNA pseudouridine synthase A [Burkholderia sp. H160] gi|209500595|gb|EEA00641.1| tRNA pseudouridine synthase A [Burkholderia sp. H160] Length = 270 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ T V AGRTD GVH L Q Sbjct: 1 MTRIALGVQYDGAAFAGWQSQPHGNTVQDELERALREFTRTPVQTVVAGRTDRGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + + NA+L TI + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRVDISWVRGPNAFLP--KTIGVQWAKPMPDDFHARFSAFERTYYYVLYVSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + LD + MR+AA+HL+G HDF+ FRS CQ+ +P + + DV Sbjct: 119 VRSPMLTTRAGWVHTPLDVDAMRLAAEHLIGEHDFSAFRSSQCQSKTPFKHLYQIDVKRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + R A +FLH +R+ +G L +G G+ + + L ++ R P P+GLY Sbjct: 179 GNFVHFRFRANAFLHHMVRNVMGCLIEIGSGRRPAAWMADVLASRSRDCAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|86148380|ref|ZP_01066673.1| tRNA pseudouridine synthase A [Vibrio sp. MED222] gi|218708902|ref|YP_002416523.1| tRNA pseudouridine synthase A [Vibrio splendidus LGP32] gi|254764875|sp|B7VL84|TRUA_VIBSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|85833863|gb|EAQ52028.1| tRNA pseudouridine synthase A [Vibrio sp. MED222] gi|218321921|emb|CAV17914.1| tRNA pseudouridine synthase A [Vibrio splendidus LGP32] Length = 264 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 137/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANA--NMPKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSRSPWRNMIHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A +F+H +R+ GSL VG G ++ L+A+DRK G A EGLY Sbjct: 178 GHYIVIDIKANAFVHHMVRNITGSLIAVGKGDQKPEWIQWLLEAKDRKVAGATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|332992505|gb|AEF02560.1| tRNA pseudouridine synthase A [Alteromonas sp. SN2] Length = 263 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 134/247 (54%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ GWQRQK+ +S+Q +EKA+ ++ + ++V AGRTD+GVHA Q Sbjct: 1 MGRIALGIEYDGASVHGWQRQKDVASVQEYLEKALTVIANKPIIVFCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-TR 119 + HFD E +NA + DTI++ V FHARFSA R Y Y I +R Sbjct: 61 IVHFDSDVERPERAWTLGINA--NMPDTIAVTWAKPVSDDFHARFSATHRRYRYVIYNSR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L G + LD E M AAQ LVG HDFTTFR+ CQ+ +P RT+ V+ Sbjct: 119 MRPAILHNGVTHEY-RELDAEKMHEAAQALVGEHDFTTFRASLCQSKTPHRTVSSVSVHR 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A +FLH +R+ GSL +G G+ + L +DR + A P GL Sbjct: 178 QGRYVVLDIRANAFLHHMVRNITGSLLCIGAGEQPVDWMAHLLTLKDRAKAATTAKPNGL 237 Query: 240 YFDSVEY 246 Y V Y Sbjct: 238 YLVDVTY 244 >gi|307544826|ref|YP_003897305.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581] gi|307216850|emb|CBV42120.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581] Length = 292 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 134/241 (55%), Gaps = 12/241 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M +EY+GS Y GWQR K+ +S+Q S+E+A+ V G V VH +GRTDSGVHA RQ+ HFD Sbjct: 1 MAVEYDGSQYCGWQRLKHAASVQASLEQALSRVAGAPVRVHASGRTDSGVHATRQIVHFD 60 Query: 66 LV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + WV A + I++ + V + FHARF A+ R Y Y ++ + Sbjct: 61 PPAPRSEKAWV-------FGANANLPRDIAVRWVMPVGEDFHARFKALARRYRYVLLNQP 113 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LE+ LD E M AAQ LVG HDF++FR+ CQ+ +P R + +V+ Sbjct: 114 SRPVLERANVTWCRDPLDAEAMHEAAQVLVGEHDFSSFRAAGCQSKTPWRHLHFIEVHRH 173 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+ + V +FLH IR+ G+L VG G+ + L + L +DR + AP GL+ Sbjct: 174 GPLVVVDVQGNAFLHHMIRNIAGALVTVGRGEQGADYLARLLALRDRTQGDVTAPACGLH 233 Query: 241 F 241 F Sbjct: 234 F 234 >gi|91792843|ref|YP_562494.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217] gi|123061034|sp|Q12P55|TRUA_SHEDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91714845|gb|ABE54771.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217] Length = 261 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y GWQRQ S+Q +EKA+ L+ E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSSYCGWQRQVEVDSVQAQLEKALSLIANEPIEVVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L DTI++ + +VD FHARFSA R Y Y I + Sbjct: 61 VHFDTTVIRPDSAWTLGVNANL--PDTIAVRWVKLVDDSFHARFSATARRYRYVIYNHKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + +D M AAQ L+G HDFT+FR++ CQ+ SP R++ +V G Sbjct: 119 RPGLLRHGLSHYHGDIDETLMHQAAQQLLGEHDFTSFRAMQCQSKSPFRSVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL +G G + K + +DR++ A P GLY Sbjct: 179 MYIMVDIKANAFLHHMVRNIVGSLLEIGLGNQPLNWISKLIAVKDRRQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|261340711|ref|ZP_05968569.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC 35316] gi|288317127|gb|EFC56065.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC 35316] Length = 270 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 RIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVLCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQA 121 HF+ +NA L I++ + V FHARFSA R Y Y I R Sbjct: 71 HFETTAVRKDAAWTLGVNANL--PGDIAVRWVKNVPDDFHARFSATARRYRYVIYNQRLR 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L +G + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 129 PAVLSQGVTHFY-EPLDAERMQRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|254670107|emb|CBA05050.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha153] gi|319409652|emb|CBY89952.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I; tRNA pseudouridylate synthase I) [Neisseria meningitidis WUE 2594] gi|325201326|gb|ADY96780.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240149] gi|325208888|gb|ADZ04340.1| tRNA pseudouridine synthase A [Neisseria meningitidis NZ-05/33] Length = 265 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 135/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQTALETALAQIAGEFVATTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAVRPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|229095128|ref|ZP_04226123.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29] gi|228688313|gb|EEL42196.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29] Length = 245 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 239 YLESVEF 245 >gi|293610220|ref|ZP_06692521.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827452|gb|EFF85816.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 265 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 134/248 (54%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + + E +V+HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADEPIVLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ ++ ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPETGWLRGANS--QLPKDISIQWIKLMDENFHARFKATARRYRYIIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTYIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIHCNYP 246 >gi|33152228|ref|NP_873581.1| tRNA pseudouridine synthase A [Haemophilus ducreyi 35000HP] gi|42559759|sp|Q7U335|TRUA_HAEDU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33148450|gb|AAP95970.1| tRNA pseudouridine synthase A [Haemophilus ducreyi 35000HP] Length = 261 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 140/247 (56%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q ++E+A+ VT + V AGRTDSGVH QV Sbjct: 1 MKVALGIEYDGSNYFGWQRQAEVVSVQQTLEEALSKVTNTTIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E C NA+L ++ I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFDTEVERPLASWCFGTNAHL--ANDIAVKWAVKVAEDFHARFSATARRYRYIIFNSKL 118 Query: 122 PLA-LEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A L KG A + P LD + M A Q+L+G DF++FR+ CQ+ +P R I H +V Sbjct: 119 RTAILPKGVAHYHYP--LDAQKMHQAGQYLLGEQDFSSFRAAKCQSHTPWRNIHHLNVVR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + + + A +F+H +R+ VGSL VG G+ ++ L+ ++R+ P EGL Sbjct: 177 QGNYVIVDIQANAFVHHMVRNIVGSLLEVGQGRQPIEWIKWLLEQKNRQLAAPTTKAEGL 236 Query: 240 YFDSVEY 246 Y +VEY Sbjct: 237 YLVNVEY 243 >gi|302770785|ref|XP_002968811.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii] gi|300163316|gb|EFJ29927.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii] Length = 300 Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 149/277 (53%), Gaps = 33/277 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + IEY G+ + GWQRQ ++QG++E A G+ V G+ RTD+GVHALR V Sbjct: 8 RYLVGIEYIGTRFSGWQRQGGVRTVQGTLEDAFSSFMGQSVSTTGSSRTDAGVHALRNVF 67 Query: 63 HFDLVR-----------EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 H DL R P ++ +A+N +L + S + +++ V FHARF A R Sbjct: 68 HVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPDFHARFRAKER 127 Query: 111 SYLYRIITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YRI+ +L E+ RAW + + L+ M+ A Q L+G HDF++FR+ CQA+SPI Sbjct: 128 TYYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAASPI 187 Query: 170 RTIDHFDV------------------NSFGNLIEIRVVAR--SFLHTQIRSFVGSLKLVG 209 +T++ + +S +L V AR SFL+ Q+R VG+LK VG Sbjct: 188 KTLEELSIRETVSWPHFLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVG 247 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GK T D+ K L+ + P+AP GL+ V+Y Sbjct: 248 AGKRTVEDVRKILEGRSISLALPMAPASGLFLADVKY 284 >gi|153826201|ref|ZP_01978868.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-2] gi|149740061|gb|EDM54230.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-2] Length = 264 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHDELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL +VG G+ ++ L +DR A EGLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLIVVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 SV+Y Sbjct: 238 LVSVDY 243 >gi|304315974|ref|YP_003851119.1| tRNA pseudouridine synthase A [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777476|gb|ADL68035.1| tRNA pseudouridine synthase A [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++IEY+G+ Y GWQ QKN +IQ +I KAI +T E V + G+ RTD+GVHAL Q Sbjct: 5 MRNIVLVIEYDGTNYHGWQIQKNVVTIQETITKAIKKITNEDVDLIGSSRTDAGVHALHQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + ALN+ L I I + D FH+R+SA + Y Y I R+ Sbjct: 65 VANFKTCTNIPTSKIPNALNSVLPAD--IVIKDAFEADMDFHSRYSAKGKRYKYIIYNRR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + K +W I KSLD E MR + ++L G HDF+ F++ SP+RT+ + Sbjct: 123 FSSPILKNYSWHISKSLDVEKMRESLKYLEGTHDFSAFKASGSSVKSPVRTVRDISLKKN 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +E + A FL+ +R VG++ VG GK D+++ L +++R G APP+GL+ Sbjct: 183 GFNVEFEIEADGFLYNMVRIIVGTIVDVGLGKINPIDVKEILDSKNRCMAGKTAPPQGLF 242 Query: 241 FDSVEY 246 + Y Sbjct: 243 LTKIYY 248 >gi|228937724|ref|ZP_04100358.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970604|ref|ZP_04131252.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977183|ref|ZP_04137582.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407] gi|228782492|gb|EEM30671.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407] gi|228789070|gb|EEM37001.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821932|gb|EEM67926.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 250 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVYDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HL G HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVESMKAAAKHLAGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|325129355|gb|EGC52190.1| tRNA pseudouridine synthase A [Neisseria meningitidis OX99.30304] Length = 265 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGEAVSTIVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESVPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSS 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|318606505|emb|CBY28003.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica Y11] Length = 280 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 I+ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 19 IKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF E +N++L I++ + VD FHARFSA R Y Y I R Sbjct: 79 VHFITTAERKNAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRY 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V Sbjct: 137 RPAVLAQGVTHCY-MPLDAEKMEQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRH 195 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 196 GAYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLY 255 Query: 241 FDSVEY 246 SV+Y Sbjct: 256 LVSVDY 261 >gi|91777254|ref|YP_552462.1| tRNA pseudouridine synthase A [Burkholderia xenovorans LB400] gi|123167830|sp|Q13S27|TRUA_BURXL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91689914|gb|ABE33112.1| tRNA pseudouridine synthase [Burkholderia xenovorans LB400] Length = 270 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSVFCGWQSQPHGNTVQDELERALREFAQTPVQTIVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRADVSWVRGTNSFLP--KTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + +LD + M+ AA HL+G HDF+ FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAARAGWVHAALDVDAMQAAAAHLIGEHDFSAFRSSQCQSKTPVKHLYQIDVRQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L +G G+ + + L ++DR+ P P+GLY Sbjct: 179 GDFIHFRFRANAFLHHMVRNLMGCLVYIGRGRRPVEWMAEVLASRDREFAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|332162419|ref|YP_004298996.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666649|gb|ADZ43293.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861403|emb|CBX71633.1| tRNA pseudouridine synthase A [Yersinia enterocolitica W22703] Length = 280 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 I+ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 19 IKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF E +N++L I++ + VD FHARFSA R Y Y I R Sbjct: 79 VHFITTAERKNAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRY 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V Sbjct: 137 RPAVLAQGVTHCY-MPLDAEKMEQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRH 195 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 196 GAYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLY 255 Query: 241 FDSVEY 246 SV+Y Sbjct: 256 LVSVDY 261 >gi|308390134|gb|ADO32454.1| tRNA pseudouridine synthase [Neisseria meningitidis alpha710] gi|325204986|gb|ADZ00440.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240355] Length = 265 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGESVATTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTVAVRPQQAWVRGVNAHLP--EGIAVLHAQQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIGPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|261496287|ref|ZP_05992691.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308049|gb|EEY09348.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 279 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 19 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I Sbjct: 79 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFN--- 133 Query: 122 PLALEKGRAWLIPKS-------LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +K R+ ++PK LD M A Q+L+G +DF++FR+ CQ+++P R I H Sbjct: 134 ----QKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHH 189 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V+ GN + + + A +F+H +R+ VG+L +G GK + + L+ +DR++ P A Sbjct: 190 LNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGKQSVEWAKWVLEQRDREKAAPTA 249 Query: 235 PPEGLYFDSVEY 246 EGLY V Y Sbjct: 250 KAEGLYLVEVHY 261 >gi|293395134|ref|ZP_06639420.1| tRNA pseudouridine synthase A [Serratia odorifera DSM 4582] gi|291422311|gb|EFE95554.1| tRNA pseudouridine synthase A [Serratia odorifera DSM 4582] Length = 270 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 138/247 (55%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +++ + IEY+GS Y+GWQRQ+ +S+QG +E+A+ V VVV AGRTD+GVHA Q Sbjct: 8 VLKIALGIEYDGSRYYGWQRQQEVASVQGCLEQALSKVADAPVVVFCAGRTDAGVHATGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-R 119 V HF+ +N +L I++ +S V + FHARFSA R Y Y I R Sbjct: 68 VVHFETTARRKDAAWTMGVNTHL--PPDIAVRWVSEVREDFHARFSATARRYRYLIFNHR 125 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L++G LD + M+ AAQ L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 126 YRPAVLQQGMTHFY-HPLDADRMQRAAQALLGENDFTSFRAVQCQSRTPWRNVKHVKVTR 184 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + + A +F+H +R+ VGSL +G G + + L +DR A +GL Sbjct: 185 HGQYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQDENWMAELLALKDRNLAAATAKADGL 244 Query: 240 YFDSVEY 246 Y +V+Y Sbjct: 245 YLVAVDY 251 >gi|325124398|gb|ADY83921.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus PHEA-2] Length = 265 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 134/248 (54%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ ++ ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPETGWLRGANS--QLPKDISIQWIKLMDENFHARFKATARRYRYIIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF YS Sbjct: 239 YFIQCNYS 246 >gi|228983685|ref|ZP_04143885.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776037|gb|EEM24403.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 250 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|229194805|ref|ZP_04321592.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293] gi|228588653|gb|EEK46684.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293] Length = 250 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYALDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|152971246|ref|YP_001336355.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166228703|sp|A6TC04|TRUA_KLEP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150956095|gb|ABR78125.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 270 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 133/240 (55%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETR 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 +G + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G + + Sbjct: 134 QGVTHF-HQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGAYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY SV+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVSVDY 252 >gi|261820765|ref|YP_003258871.1| tRNA pseudouridine synthase A [Pectobacterium wasabiae WPP163] gi|261604778|gb|ACX87264.1| tRNA pseudouridine synthase A [Pectobacterium wasabiae WPP163] Length = 283 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 23 LKIALGIEYDGSQYYGWQRQNDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQV 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +NA L I++ + VD+ FHARFSA R Y Y I R Sbjct: 83 VHFTTQAIRKDAAWTMGVNANLPPD--IAVRWVKTVDEDFHARFSATARRYRYVIYNHRY 140 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V Sbjct: 141 RPAVLSHGMTHFY-HPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRNVNHLKVTRH 199 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 200 GDYIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLVAKDRTLAGATARAEGLY 259 Query: 241 FDSVEY 246 +V+Y Sbjct: 260 LVAVDY 265 >gi|206974202|ref|ZP_03235119.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217958024|ref|YP_002336568.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|222094223|ref|YP_002528280.1| tRNA pseudouridine synthase a [Bacillus cereus Q1] gi|206747442|gb|EDZ58832.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217065270|gb|ACJ79520.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|221238278|gb|ACM10988.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A) [Bacillus cereus Q1] Length = 245 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|254429312|ref|ZP_05043019.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881] gi|196195481|gb|EDX90440.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881] Length = 267 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 136/253 (53%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY+G+ + GWQ Q+ G ++Q +E A+ V V V AGRTD+GVH Sbjct: 1 MTRIALGIEYDGTDFRGWQTQQPGVRTVQECLEAALSKVANHPVAVVCAGRTDAGVHGTG 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD ++ W+ + A + +++ + VD FHARFSA+ R Y Y Sbjct: 61 QVVHFDSEAPREMKSWI-------MGANTNLPRDVTVRWATPVDDAFHARFSAVSRRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I P AL + + + LD MR AA +LVG HDFT +RS+HCQA SP++T+ Sbjct: 114 VIYNHARPPALFRNQVTWNYRPLDVAAMREAAAYLVGEHDFTAYRSVHCQAKSPLKTMHS 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ G ++ + A +FL +R+ G L VG GK + + L+ +DR++ A Sbjct: 174 LELYEHGKVLVLEAHANAFLMHMVRNIAGVLMSVGAGKRPAHWAREVLEGRDRRKGAATA 233 Query: 235 PPEGLYFDSVEYS 247 PP GLY +EY Sbjct: 234 PPFGLYLVDIEYP 246 >gi|229137290|ref|ZP_04265906.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST26] gi|228646193|gb|EEL02411.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST26] Length = 250 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|229917326|ref|YP_002885972.1| tRNA pseudouridine synthase A [Exiguobacterium sp. AT1b] gi|259550390|sp|C4KZL4|TRUA_EXISA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229468755|gb|ACQ70527.1| tRNA pseudouridine synthase A [Exiguobacterium sp. AT1b] Length = 246 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 131/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y G+Q Q NG++IQ IE + + V + +GRTD+ VHAL Q Sbjct: 1 MRRIKLIVAYDGTHYAGYQVQPNGNTIQAEIESVLARMHRHPVKIIASGRTDARVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E KALNA L D I + +D FHAR+ A R+ Y Y I RQ Sbjct: 61 VIHFDTTLEMPAERFVKALNAML--PDDILVKQAEEMDDTFHARYGAKRKEYRYHI--RQ 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + L E MR A + L+G HDFT+F + +RTI +V Sbjct: 117 TEDPFRRHYAATVTYKLSLEAMRQAMERLIGTHDFTSFSVTKAEVEDRVRTIYEAEVLEM 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R V FL+ Q+R VG++ VG GK+ D+ + L+A+DR+ G APP GLY Sbjct: 177 GDEIIFRFVGSGFLYNQVRIMVGTVIEVGRGKYQPADITQMLEAKDRRVAGITAPPHGLY 236 Query: 241 FDSVEYS 247 +V Y Sbjct: 237 LWNVNYE 243 >gi|326938210|gb|AEA14106.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 245 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVYDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HL G HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVESMKAAAKHLAGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|120598385|ref|YP_962959.1| tRNA pseudouridine synthase A [Shewanella sp. W3-18-1] gi|166229838|sp|A1RIB0|TRUA_SHESW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120558478|gb|ABM24405.1| tRNA pseudouridine synthase A [Shewanella sp. W3-18-1] Length = 261 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ +V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLERALSIVANEPIGLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA + D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFDTNAIRNEGAWTLGVNA--NLPDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGNIDADKMHQAAQVLLGEQDFTSFRAVQCQSKTPFRNVHSVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|325206941|gb|ADZ02394.1| tRNA pseudouridine synthase A [Neisseria meningitidis M04-240196] Length = 265 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTIVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTAAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESVPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSS 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|123441645|ref|YP_001005630.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088606|emb|CAL11401.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 280 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 I+ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 19 IKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF E +N++L I++ + VD FHARFSA R Y Y I R Sbjct: 79 VHFITTAERKDAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRY 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V Sbjct: 137 RPAVLAQGVTHCY-MPLDAEKMAQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRH 195 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 196 GAYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLY 255 Query: 241 FDSVEY 246 SV+Y Sbjct: 256 LVSVDY 261 >gi|320183774|gb|EFW58608.1| tRNA pseudouridine synthase A [Shigella flexneri CDC 796-83] Length = 270 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L D I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|228919351|ref|ZP_04082720.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840287|gb|EEM85559.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 250 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|302877741|ref|YP_003846305.1| tRNA pseudouridine synthase A [Gallionella capsiferriformans ES-2] gi|302580530|gb|ADL54541.1| tRNA pseudouridine synthase A [Gallionella capsiferriformans ES-2] Length = 255 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 137/250 (54%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G Y GWQ Q G ++Q +++ A+ + V V+ AGRTD+GVHAL QV Sbjct: 1 MRIALGVEYDGKPYCGWQSQPGGRTVQDTLQSALSHIADAPVTVNAAGRTDTGVHALEQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ + WV + +NA L S + + V +FHARFSA RSY Y + Sbjct: 61 VHFETDANRPLSAWV-----RGVNAMLPPS--VVVRWAHPVPDEFHARFSAQGRSYRYLL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 I + A+ G+A LD MR AA +L+G HDF+ FR+ CQA SP++ ++ D Sbjct: 114 INKPVRSAIHAGKAGWFHLPLDIALMREAAGYLLGEHDFSAFRAAECQAKSPVKCMNKID 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+++ + A +FLH +R+ VG L VG GK+ + L ++ R P P Sbjct: 174 IYLNGDVLVFDLEANAFLHHMVRNIVGCLVYVGKGKYPPAWMADLLASRTRHLAAPTFSP 233 Query: 237 EGLYFDSVEY 246 +GLY ++Y Sbjct: 234 DGLYLRRIQY 243 >gi|194290207|ref|YP_002006114.1| tRNA pseudouridine synthase a [Cupriavidus taiwanensis LMG 19424] gi|238692732|sp|B3R117|TRUA_CUPTR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193224042|emb|CAQ70051.1| tRNA pseudouridylate synthase I [Cupriavidus taiwanensis LMG 19424] Length = 272 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 141/253 (55%), Gaps = 10/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIALGLHYDGAAFSGWQSQPHRNTVQDHLEDAIERFAGVRLLTTVAGRTDAGVHALGQ 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V H D LVRE P + +NA+L S I++ VD FHARF A R Y Y + T Sbjct: 61 VIHLDTELVRE--PFSWVRGVNAFLPPS--IALQWALPVDVGFHARFLAYERMYYYALYT 116 Query: 119 RQAPLALEKGRA--WLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + GRA ++P + LD E MR AA HL+G HDF+ FR+ CQA SP++T+ Sbjct: 117 GPHRVPMVHGRAGYQMLPPGQRLDVEAMRAAAAHLIGEHDFSAFRAAECQAKSPVKTMYD 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + GN + +R A +FLH +R+ +G L VG ++ + + L +DRK P Sbjct: 177 VTIRDDGNWVFLRFRASAFLHHMVRNLMGCLVAVGRRRYPPDWMAQVLAGRDRKLAAPTF 236 Query: 235 PPEGLYFDSVEYS 247 P+GLY V+Y Sbjct: 237 MPDGLYLVGVKYP 249 >gi|134293154|ref|YP_001116890.1| tRNA pseudouridine synthase A [Burkholderia vietnamiensis G4] gi|166228688|sp|A4JMC2|TRUA_BURVG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134136311|gb|ABO57425.1| tRNA pseudouridine synthase A [Burkholderia vietnamiensis G4] Length = 270 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 10/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--HG--AGRTDSGVHA 57 +R + ++Y+G+ + GWQ Q +G ++Q ++E+A+ GE V H AGRTD+GVH Sbjct: 1 MRIALGVQYDGAAFCGWQAQPHGKTVQDALERAL----GEFACVPLHTTVAGRTDTGVHG 56 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 57 LGQVVHFDTALDRAEFSWVRGTNAFLP--PTVSVQWAKAMPDTFHARFSAFERTYYYALY 114 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 115 VHPVRSPMLAGRAGWIHTPLDDDAMRAAAVHLIGEHDFSSFRSSECQSKTPVKHLYQIDV 174 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ I R A +FLH +R+ +G L VG G++ + L L +DR P + Sbjct: 175 RRSGHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMAD 234 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 235 GLYLAHVGY 243 >gi|261252353|ref|ZP_05944926.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891] gi|260935744|gb|EEX91733.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891] Length = 264 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ+ S+Q +E+A+ +V + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQREVKSVQEKLERALSVVANQPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L D I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTTATRKMVAWTMGANANL--PDDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSSGVSHYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ + + L +DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQQPEWIAELLAVKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|254506845|ref|ZP_05118984.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 16] gi|219550130|gb|EED27116.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 16] Length = 264 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQQDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L I++ V ++FHARF+A R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANL--PGDIAVRWAKEVPEEFHARFTATARRYRYIIFNSAL 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD + M +AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSTGVS-HYHGELDEKKMHLAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + A +F+H +R+ GSL VG G+ ++ L A+DRK G A EGLY Sbjct: 178 NQYVVIDIKANAFVHHMVRNITGSLICVGRGEQEPEWIQWLLGAKDRKLAGATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|229114082|ref|ZP_04243507.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3] gi|228669352|gb|EEL24769.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3] Length = 245 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +S+E+ Sbjct: 239 YLESIEF 245 >gi|322806167|emb|CBZ03735.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065] Length = 246 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKHSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|152974254|ref|YP_001373771.1| tRNA pseudouridine synthase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023006|gb|ABS20776.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98] Length = 260 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G + GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 16 MNNYKLTIQYDGGRFKGWQRLGNNDNTIQGKIESVLSEMIGQEIEIIGCSRTDAGVHALN 75 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + V + K LN YL + ISI + V ++FHAR+++ ++YLY+I Sbjct: 76 QVANFKVDEKLVETKVKKYLNQYL--PNDISITEVEQVPERFHARYNSKTKTYLYKIWNE 133 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + +PK L+ ENM+ AA + +G HDFT F + + S +R I DV Sbjct: 134 EHTNPFMRKYSMHVPKKLNVENMKQAAHYFIGSHDFTAFSNAKSKKKSMVREIYVLDVFE 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 194 SEGFIQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLADANGL 253 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 254 YLEKVDF 260 >gi|296104004|ref|YP_003614150.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058463|gb|ADF63201.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 270 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 132/240 (55%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVLCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYVIYNQRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 +G + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ FG + + Sbjct: 134 QGVTHFY-EPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRFGAYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY SV+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSVDY 252 >gi|118476179|ref|YP_893330.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|228925681|ref|ZP_04088768.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931917|ref|ZP_04094811.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944241|ref|ZP_04106617.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089549|ref|ZP_04220816.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42] gi|229120089|ref|ZP_04249341.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201] gi|118415404|gb|ABK83823.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|228663327|gb|EEL18915.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201] gi|228693765|gb|EEL47461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42] gi|228815392|gb|EEM61637.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827702|gb|EEM73442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833956|gb|EEM79506.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 250 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|157371571|ref|YP_001479560.1| tRNA pseudouridine synthase A [Serratia proteamaculans 568] gi|157323335|gb|ABV42432.1| tRNA pseudouridine synthase A [Serratia proteamaculans 568] Length = 273 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 137/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ +S+Q +E+A+ V + V AGRTD+GVHA QV Sbjct: 12 LKIALGIEYDGSQYYGWQRQQEVASVQACLEQALSKVADAPINVLCAGRTDAGVHATGQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ + +N +L I++ ++ V++ FHARFSA R Y Y I R Sbjct: 72 VHFETTAQRKDAAWTMGVNTHL--PPDIAVRWVTGVNEDFHARFSATARRYRYIIYNHRY 129 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L+KG LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V + Sbjct: 130 RPAVLQKGMTHFY-HPLDAERMERAAQALLGENDFTSFRTVQCQSRTPWRNVKHVKVTRY 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G + + L +DR A +GLY Sbjct: 189 GEYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQDENWMAELLALKDRNLAAATARADGLY 248 Query: 241 FDSVEY 246 SV+Y Sbjct: 249 LVSVDY 254 >gi|33596565|ref|NP_884208.1| tRNA pseudouridine synthase A [Bordetella parapertussis 12822] gi|33601118|ref|NP_888678.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50] gi|42559762|sp|Q7U376|TRUA_BORPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42559763|sp|Q7U386|TRUA_BORBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33566334|emb|CAE37247.1| tRNA pseudouridine synthase A [Bordetella parapertussis] gi|33575553|emb|CAE32631.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50] Length = 270 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 139/248 (56%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q +E A+ F G V AGRTD+GVHA Sbjct: 1 MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L S I + V + FHARFSA R+Y+Y + Sbjct: 61 MQVIHLDTDLQRRDESWVRGVNAFLPPS--IVVQWARPVSEAFHARFSARSRTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA + LD MR AA+ L+G HDF++FRS CQA P+RT+ D++ Sbjct: 119 GRVRPALWAGRAGWAFQPLDVPAMRAAARTLLGEHDFSSFRSSQCQARHPVRTLHRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L VG G+ + ++ L+A+DR+ P P+G Sbjct: 179 ERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGRESVAWMDALLRARDRRLGAPTFMPDG 238 Query: 239 LYFDSVEY 246 LY ++EY Sbjct: 239 LYLSAIEY 246 >gi|298370079|ref|ZP_06981395.1| tRNA pseudouridine synthase A [Neisseria sp. oral taxon 014 str. F0314] gi|298281539|gb|EFI23028.1| tRNA pseudouridine synthase A [Neisseria sp. oral taxon 014 str. F0314] Length = 275 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ +++ Y+GS +FGWQ+Q G ++Q +E AI + GE + V AGRTD+GVHA+ QV Sbjct: 14 RWILVLSYDGSRFFGWQKQAEGIPTVQAELESAISKIAGENISVTVAGRTDTGVHAVAQV 73 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P + +NAYL D +++L FHARF A R Y Y + + Sbjct: 74 VHFDTAVFRPPQAWVRGVNAYLP--DGVAVLCAQTTQPHFHARFDAFGRRYRYLLQSAPV 131 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L KGRA L+ E MR AA LVG HDF++FR+ CQA SP++TI ++ Sbjct: 132 RSPLMKGRAGWTHLPLNLERMRQAAALLVGEHDFSSFRAAECQAKSPVKTIYSTEIGGGA 191 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + +FLH +R+ +G+L VG G+ ++ + R + P +GLY Sbjct: 192 EWLYFDIHGNAFLHHMVRNIMGALVYVGCGRLDVGQFADLIKERSRLKAPPTFMSDGLYL 251 Query: 242 DSVEY 246 V+Y Sbjct: 252 TGVDY 256 >gi|261493083|ref|ZP_05989622.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311262|gb|EEY12426.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 279 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 140/252 (55%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 19 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I Sbjct: 79 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFN--- 133 Query: 122 PLALEKGRAWLIPKS-------LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +K R+ ++PK LD M A Q+L+G +DF++FR+ CQ+++P R I H Sbjct: 134 ----QKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHH 189 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V+ GN + + + A +F+H +R+ VG+L +G GK + L+ +DR++ P A Sbjct: 190 LNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGKQPVEWAKWVLEQRDREKAAPTA 249 Query: 235 PPEGLYFDSVEY 246 EGLY V Y Sbjct: 250 KAEGLYLVEVHY 261 >gi|240948735|ref|ZP_04753107.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305] gi|240296951|gb|EER47529.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305] Length = 262 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 136/252 (53%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ++ S+Q +E+A+ V V V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQESVESVQQKLEEALSTVANSPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V + FHARFSA R Y Y I R Sbjct: 61 VHFETDANRPLQAWCFGTNAHL--PDDIAVKWAVEVPEDFHARFSATARRYRYIIFNR-- 116 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 K R+ ++PK LD E M A Q+L+G +DF++FR+ CQ+ +P R I H Sbjct: 117 -----KLRSAILPKGVSHYHVDLDHEKMHEAGQYLLGENDFSSFRAAKCQSHTPWRNIHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V+ G I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A Sbjct: 172 LNVSRLGAYIIVDIQANAFVHHMVRNIVGSLIEVGQGNQPPEWIKWLLEQKDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 EGLY V Y Sbjct: 232 KAEGLYLVDVHY 243 >gi|168705501|ref|ZP_02737778.1| tRNA pseudouridine synthase A [Gemmata obscuriglobus UQM 2246] Length = 263 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 135/242 (55%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALRQVAHF 64 +II Y+G+ +FGWQ Q ++Q ++EKAI +T E V ++ +GRTDSGVHA+ QVA+ Sbjct: 6 LIIRYDGTDFFGWQTQPGRRTVQETVEKAIAEITREPRVRLNCSGRTDSGVHAVGQVANV 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +L KA+NA K+ + + + ++ + F A A+R+ Y Y + + Sbjct: 66 YTASKLSCAVLLKAINA--KLPEDVGVREVTEAPQSFCANKDAVRKMYRYVVQDGRLQDP 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + AW + + L+ E M A++ LVGRHDF F + + +RTI H VN FG I Sbjct: 124 FLRKYAWFVRQHLNAEAMARASRCLVGRHDFRCFETEWPNRLTSVRTITHLSVNRFGECI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I V A FL+ +R+ GSL VG G W T + L A DR+ GP APPEGL+ V Sbjct: 184 WIDVEANGFLYNMVRAIAGSLVQVGRGFWPETQIADVLHAMDRRLAGPTAPPEGLFLMRV 243 Query: 245 EY 246 Y Sbjct: 244 TY 245 >gi|153813476|ref|ZP_01966144.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174] gi|149830420|gb|EDM85512.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174] Length = 250 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + A+ + GE + + GA RTD+GVHAL Sbjct: 5 MKRVGLVVAYDGTNYSGWQIQPNGITIQGVLNDALTDLLGEKIEIMGASRTDAGVHALGN 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN ++ + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 65 VAVFDTNTRIPGEKISYALNQ--RLPEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD + MR A +L+GRHDF +F Q S +RT+ D+ Sbjct: 123 FPVPTERLYSYFYHYKLDVDKMREATSYLIGRHDFASFCGTGAQVKSTVRTLTGIDIWRD 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++K L A DR GP AP GL Sbjct: 183 GDIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLT 242 Query: 241 FDSVEY 246 +E+ Sbjct: 243 LMGIEF 248 >gi|119945656|ref|YP_943336.1| tRNA pseudouridine synthase A [Psychromonas ingrahamii 37] gi|166228751|sp|A1SW72|TRUA_PSYIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119864260|gb|ABM03737.1| tRNA pseudouridine synthase A [Psychromonas ingrahamii 37] Length = 261 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 138/247 (55%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQK S+Q +E+++ + V VH AGRTDSGVH+ QV Sbjct: 1 MRIALGIEYDGAAYYGWQRQKEVISVQQELEQSLSKIANHTVRVHCAGRTDSGVHSTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +NA L I++ + VD FHARFSA R Y Y II A Sbjct: 61 VHFETEAIRKDVAWTLGVNANL--PKDIAVRWVKQVDSSFHARFSATARHYRY-IIYNGA 117 Query: 122 --PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L G + LD + M +A Q L+G DFT+FR++HCQASSP++ I++ +++ Sbjct: 118 FRPGILGTGLSHY-HMDLDVQKMHLAGQMLLGEQDFTSFRALHCQASSPVKCIEYLNISQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + A +FLH +R+ GSL +G GK L+ L +DR + A P GL Sbjct: 177 RSQFIIIDIKANAFLHHMVRNIAGSLIEIGCGKQPVDWLKTLLAYKDRSKAAATAKPGGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YLVEVDY 243 >gi|47567253|ref|ZP_00237967.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] gi|47556096|gb|EAL14433.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] Length = 245 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGCVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|332307082|ref|YP_004434933.1| tRNA pseudouridine synthase A [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174411|gb|AEE23665.1| tRNA pseudouridine synthase A [Glaciecola agarilytica 4H-3-7+YE-5] Length = 263 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+G+ GWQRQ S+Q +E+A+ + E + V AGRTD+GVHA QV Sbjct: 1 MRIALGVEYDGAGFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N YL DT+S+ + V FHARFSA R Y Y I Sbjct: 61 VHFETNSQRPDRAWTLGINTYL--PDTVSVRWVKAVPDDFHARFSATARRYRYIIYNSTL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + I LD E M AAQ LVG+HDF++FR+++CQA + RT+ H V G Sbjct: 119 RSGILANGVTHIYGDLDHELMNQAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V A +FLH +R+ G+L +G + +++ L+ +DR + G A P GLY Sbjct: 179 DYIVIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VHVTY 243 >gi|206580474|ref|YP_002237289.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae 342] gi|288934225|ref|YP_003438284.1| tRNA pseudouridine synthase A [Klebsiella variicola At-22] gi|290508428|ref|ZP_06547799.1| tRNA pseudouridine synthase A [Klebsiella sp. 1_1_55] gi|238057733|sp|B5XNR9|TRUA_KLEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206569532|gb|ACI11308.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae 342] gi|288888954|gb|ADC57272.1| tRNA pseudouridine synthase A [Klebsiella variicola At-22] gi|289777822|gb|EFD85819.1| tRNA pseudouridine synthase A [Klebsiella sp. 1_1_55] Length = 270 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 135/247 (54%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH Q Sbjct: 9 IFKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-R 119 V HF+ + +NA L I++ + V FHARFSA R Y Y I R Sbjct: 69 VVHFETRAQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHR 126 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L G + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V Sbjct: 127 LRPAVLSHGVTHF-HQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +G + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGL Sbjct: 186 YGAYVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGL 245 Query: 240 YFDSVEY 246 Y SV+Y Sbjct: 246 YLVSVDY 252 >gi|238895838|ref|YP_002920574.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae NTUH-K2044] gi|329997357|ref|ZP_08302740.1| tRNA pseudouridine synthase A [Klebsiella sp. MS 92-3] gi|238548156|dbj|BAH64507.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328539106|gb|EGF65142.1| tRNA pseudouridine synthase A [Klebsiella sp. MS 92-3] Length = 270 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 132/240 (55%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETR 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 G + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G + + Sbjct: 134 HGVTHF-HQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGAYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY SV+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVSVDY 252 >gi|153816265|ref|ZP_01968933.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756] gi|317501758|ref|ZP_07959944.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088721|ref|ZP_08337631.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] gi|145846448|gb|EDK23366.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756] gi|316896791|gb|EFV18876.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407244|gb|EGG86747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] Length = 271 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +++ + KA+ +T E V V GA RTD+GVHA Sbjct: 1 MRRIKLTVAYDGTDYCGWQIQPNGITVEEVLNKALSDLTKETVKVIGASRTDAGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + A+NA L D I ++ V +H R+ ++Y Y I+ R+ Sbjct: 61 VAVFDTKSPIPPERIAYAVNALL--PDDIVVVRSEEVGCDWHPRYQNSIKTYEYTIVNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + +W + LD ++M+ AA++ +G HDF TF S+H + +R ID DV Sbjct: 119 MPDPLRRRDSWFVSFPLDIDDMKKAARYFIGEHDFKTFCSVHTGVKTTVRRIDSLDVEKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I+IR+ FL+ +R G+L VG G + +++++ L+ ++R G APP+GL Sbjct: 179 GERIKIRISGNGFLYNMVRIIAGTLVEVGRGAFAPSEVKEMLEQKERGRAGATAPPQGLV 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 LLGIVYD 245 >gi|313680524|ref|YP_004058263.1| tRNA pseudouridine synthase a [Oceanithermus profundus DSM 14977] gi|313153239|gb|ADR37090.1| tRNA pseudouridine synthase A [Oceanithermus profundus DSM 14977] Length = 251 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 141/249 (56%), Gaps = 7/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R +++EY+G+ + G+Q Q G ++QG +E A+ + G V AGRTDSGVHAL Sbjct: 1 MRRLKLVLEYDGTDFAGFQLQARGERTVQGVLEAALARIPGARPKVTAAGRTDSGVHALA 60 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H+D + VPV + +ALNA L + +L V +HAR+SA R YLYR++ Sbjct: 61 MPVHYD-TEDTVPVERVPQALNALL--PPDVRVLEAEEVPPDWHARYSARWRRYLYRVLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R+ P AL++ R W +P+ D + AA+ LVG HDF F + +A+ +R + V Sbjct: 118 RRQPTALDRHRVWWVPQPFDFPAIAAAARTLVGEHDFGAFANREKRAT--VRRLYQAHVE 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G + + V F+ Q+R+ VG+L VG G+ D+ + L+ +R E G APP+G Sbjct: 176 AVGGELHLHFVGSGFVRGQVRAMVGTLVEVGLGRRPPEDVARLLENPERSEGGATAPPQG 235 Query: 239 LYFDSVEYS 247 LYF + YS Sbjct: 236 LYFVAAGYS 244 >gi|262043366|ref|ZP_06016493.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039278|gb|EEW40422.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 270 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 132/240 (55%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETR 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKRVPADFHARFSATARRYRYVIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 G + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G + + Sbjct: 134 HGVTHF-HQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGAYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY SV+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLVSVDY 252 >gi|196034640|ref|ZP_03102048.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|196045298|ref|ZP_03112530.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|218901631|ref|YP_002449465.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|300119051|ref|ZP_07056762.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|301052143|ref|YP_003790354.1| tRNA pseudouridine synthase A [Bacillus anthracis CI] gi|195992683|gb|EDX56643.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|196023882|gb|EDX62557.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|218540034|gb|ACK92432.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|298723667|gb|EFI64398.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|300374312|gb|ADK03216.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis str. CI] Length = 245 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|28898964|ref|NP_798569.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD 2210633] gi|260365288|ref|ZP_05777845.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030] gi|260878838|ref|ZP_05891193.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034] gi|260896240|ref|ZP_05904736.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466] gi|260899991|ref|ZP_05908386.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037] gi|31340461|sp|Q87MP1|TRUA_VIBPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28807183|dbj|BAC60453.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD 2210633] gi|308088841|gb|EFO38536.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466] gi|308094227|gb|EFO43922.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034] gi|308107376|gb|EFO44916.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037] gi|308115414|gb|EFO52954.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030] gi|328474496|gb|EGF45301.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 10329] Length = 264 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVNRKMVAWTMGANA--NMPSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|311278721|ref|YP_003940952.1| tRNA pseudouridine synthase A [Enterobacter cloacae SCF1] gi|308747916|gb|ADO47668.1| tRNA pseudouridine synthase A [Enterobacter cloacae SCF1] Length = 270 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 132/240 (55%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVTVFCAGRTDAGVHGTGQVVHFETR 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 E +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AERKDAAWTLGVNANL--PGDIAVRWVKYVADDFHARFSATARRYRYVIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 +G + LD M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G + + Sbjct: 134 QGVT-HYHQPLDAARMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVERYGAYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY SV+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRTLAAATAKAEGLYLVSVDY 252 >gi|238916297|ref|YP_002929814.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238871657|gb|ACR71367.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 253 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q +I+ ++KAI +TGE V V GA RTD+GVHA Sbjct: 1 MRRIKLIVAYDGTEYSGWQIQPEAPTIEMCLDKAIRELTGENVHVTGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN +L D+I I + V FH R R++Y YRI+ Sbjct: 61 VAVFDTESTIPGDRFTFALNRFL--PDSIVIQDSWEVSGDFHPRHCNTRKTYEYRILNTV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL ++ W + S+D E M+ AA ++VG HDF +F + QA S +RTI +V Sbjct: 119 VPLPQKRNFTWHVTGSIDIEKMKEAAAYIVGEHDFKSFCCVRTQAESTVRTIYSLEVLQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R G+L VG G++ +++ L+A+DR G APP+GL Sbjct: 179 GSEIIIRIKGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQTAPPQGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVGIEY 244 >gi|113868577|ref|YP_727066.1| tRNA pseudouridine synthase A [Ralstonia eutropha H16] gi|123032833|sp|Q0K8H3|TRUA_RALEH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113527353|emb|CAJ93698.1| transfer RNA-pseudouridine synthase I [Ralstonia eutropha H16] Length = 272 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 140/251 (55%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIALGLHYDGAAFSGWQSQPHRNTVQDHLENAIERFAGVRLLTTVAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D E P + +NA+L S I++ VD+ FHARF A R Y Y + T Sbjct: 61 VIHLDTALEREPFSWVRGVNAFLPPS--IALQWALPVDQGFHARFLAFERMYYYALYTGP 118 Query: 121 APLALEKGRA--WLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L GRA ++P + LD + MR AA L+G HDF+ FR+ CQA SP++T+ Sbjct: 119 HRVPLVHGRAGYQMLPPGQRLDVDAMREAAACLLGEHDFSAFRAAECQAKSPVKTMYDVT 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + GN + +R A +FLH +R+ +G L VG G++ + L + L ++RK P P Sbjct: 179 IRDDGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPAHWLAQVLAGRERKLAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V+Y Sbjct: 239 DGLYLVGVKYP 249 >gi|332798239|ref|YP_004459738.1| tRNA pseudouridine synthase A [Tepidanaerobacter sp. Re1] gi|332695974|gb|AEE90431.1| tRNA pseudouridine synthase A [Tepidanaerobacter sp. Re1] Length = 243 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 139/242 (57%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY G+ Y GWQRQKN SIQ +E AI +TGE V V G+GRTD+GVHAL QVA+F Sbjct: 5 ILLEYEGTAYSGWQRQKNAISIQEVLENAIKSITGEAVNVIGSGRTDAGVHALGQVANFK 64 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +P+ L A+N+ K+ + I + + IV + FHARF A + Y Y I + P Sbjct: 65 -TQTKIPIEKLPYAINS--KLPEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKFPSP 121 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L K ++ P+ L+ M+ AA L+G HDF +F + + S +R I+ +V G+++ Sbjct: 122 LLKRYSYFYPRPLNVRAMKKAADMLIGTHDFASFMASNSPVKSTVRCIERLEVFQNGDIV 181 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + + A FL+ +R G+L VG K + D+ ++++DR G PP+GL V Sbjct: 182 KFEIEANGFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKTLPPQGLCLIKV 241 Query: 245 EY 246 Y Sbjct: 242 IY 243 >gi|30018678|ref|NP_830309.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206967868|ref|ZP_03228824.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|218230891|ref|YP_002365270.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|229068175|ref|ZP_04201482.1| tRNA pseudouridine synthase A 2 [Bacillus cereus F65185] gi|229108094|ref|ZP_04237719.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-15] gi|229125922|ref|ZP_04254947.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-Cer4] gi|296501252|ref|YP_003662952.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] gi|42559783|sp|Q813Z9|TRUA2_BACCR RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|29894219|gb|AAP07510.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206736788|gb|EDZ53935.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|218158848|gb|ACK58840.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228657580|gb|EEL13393.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-Cer4] gi|228675369|gb|EEL30588.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-15] gi|228714989|gb|EEL66857.1| tRNA pseudouridine synthase A 2 [Bacillus cereus F65185] gi|296322304|gb|ADH05232.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] Length = 245 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|152979369|ref|YP_001344998.1| tRNA pseudouridine synthase A [Actinobacillus succinogenes 130Z] gi|171704324|sp|A6VQ16|TRUA_ACTSZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150841092|gb|ABR75063.1| tRNA pseudouridine synthase A [Actinobacillus succinogenes 130Z] Length = 264 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EYNG YFGWQRQ+ S+Q +EKA+ V E + + AGRTDSGVH QV Sbjct: 1 MKIALGVEYNGKRYFGWQRQEKVLSVQEELEKALSFVANEKIDLFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E V A + D I++ D +FHARFSA R Y Y I T Sbjct: 61 VHFET--EVVRPERAWAFGTNANLPDDIAVKWAKTADDEFHARFSATARRYRYLIYTN-- 116 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 PL R+ ++P+ LD E M A Q L+G +DF++FR+ CQ+ +P R + H Sbjct: 117 PL-----RSAVLPEGVTHCHLPLDHEKMHEAGQFLLGENDFSSFRAAQCQSKTPWRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G I + + A +F+H +R+ VGSL VG G+ ++ L+ ++RK P A Sbjct: 172 LQVTRHGRYIVVDIQANAFVHHMVRNIVGSLMEVGSGRQPVEWMKWLLEQRNRKLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 232 KPQGLYLVRVTY 243 >gi|146312509|ref|YP_001177583.1| tRNA pseudouridine synthase A [Enterobacter sp. 638] gi|166991163|sp|A4WCV2|TRUA_ENT38 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145319385|gb|ABP61532.1| tRNA pseudouridine synthase A [Enterobacter sp. 638] Length = 270 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS Y+GWQRQ S+Q +EKA+ V + + V AGRTD+GVH QV Sbjct: 11 RIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANQPIAVCCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQA 121 HF+ +NA L I++ + V FHARFSA R Y Y I R Sbjct: 71 HFETTSVRKDAAWTLGVNANL--PGDIAVRWVKDVPDDFHARFSATARRYRYIIYNQRLR 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L +G + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 129 PAVLGQGVTHFY-EPLDAERMQRAAQSLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|117619854|ref|YP_857188.1| tRNA pseudouridine synthase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166228676|sp|A0KLN7|TRUA_AERHH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|117561261|gb|ABK38209.1| tRNA pseudouridine synthase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 269 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +EKA+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQEELEKALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTDANRAEGAWTLGLNSNLP--PDIAVRWVKQVDEGFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +++D + M A Q L+G HDF+TFR++ CQ+++P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETIDADLMHQAGQSLLGEHDFSTFRAVACQSNTPWRNVTHLCVSRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR GP A GLY Sbjct: 179 PYIVLDIKANAFLHHMVRNITGSLLLVGQGLQPVEWIAEVLAARDRNLAGPTAKAGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|210618029|ref|ZP_03291864.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787] gi|210149022|gb|EEA80031.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787] Length = 245 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +++ + KA+ +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTIAYDGTNYCGWQVQPNGITVEEVVNKALKKLTGEDIQVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + ALN ++ + I I+ V + FH R+ ++Y Y I+ + Sbjct: 61 VAVFDTHTTIPPERISYALNQ--RLPEDIVIVKSEEVAEDFHPRYCDCSKTYEYHILNMR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ ++ + + LD E MR AA +L+G HDF +F ++ +RT+ ++ Sbjct: 119 IPIPTKRLTNYFVSYDLDVEKMRKAAGYLIGEHDFVSFCNVRTDVEDTVRTVTELEILKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G + +++ L+A+DRK G APP GL Sbjct: 179 GEEITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPEKVKEILEAKDRKAAGVTAPPHGLI 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 LAEIRYE 245 >gi|163801903|ref|ZP_02195800.1| tRNA pseudouridine synthase A [Vibrio sp. AND4] gi|159174411|gb|EDP59215.1| tRNA pseudouridine synthase A [Vibrio sp. AND4] Length = 264 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQQELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANA--NMPSDIAVRWAVEVSDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNMMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L A+DRK G A EGLY Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPAWIKSLLDAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|15641014|ref|NP_230645.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587328|ref|ZP_01677099.1| tRNA pseudouridine synthase A [Vibrio cholerae 2740-80] gi|147674772|ref|YP_001216471.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|153819838|ref|ZP_01972505.1| tRNA pseudouridine synthase A [Vibrio cholerae NCTC 8457] gi|183179415|ref|ZP_02957626.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-3] gi|227081173|ref|YP_002809724.1| tRNA pseudouridine synthase A [Vibrio cholerae M66-2] gi|229505402|ref|ZP_04394912.1| tRNA pseudouridine synthase A [Vibrio cholerae BX 330286] gi|229510928|ref|ZP_04400407.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|229518049|ref|ZP_04407493.1| tRNA pseudouridine synthase A [Vibrio cholerae RC9] gi|229529907|ref|ZP_04419297.1| tRNA pseudouridine synthase A [Vibrio cholerae 12129(1)] gi|229608421|ref|YP_002879069.1| tRNA pseudouridine synthase A [Vibrio cholerae MJ-1236] gi|254848129|ref|ZP_05237479.1| tRNA pseudouridine synthase A [Vibrio cholerae MO10] gi|255744781|ref|ZP_05418732.1| tRNA pseudouridine synthase A [Vibrio cholera CIRS 101] gi|262151270|ref|ZP_06028406.1| tRNA pseudouridine synthase A [Vibrio cholerae INDRE 91/1] gi|262167166|ref|ZP_06034879.1| tRNA pseudouridine synthase A [Vibrio cholerae RC27] gi|262190865|ref|ZP_06049084.1| tRNA pseudouridine synthase A [Vibrio cholerae CT 5369-93] gi|297578606|ref|ZP_06940534.1| tRNA pseudouridine synthase A [Vibrio cholerae RC385] gi|298498887|ref|ZP_07008694.1| tRNA pseudouridine synthase A [Vibrio cholerae MAK 757] gi|24212594|sp|Q9KTA4|TRUA_VIBCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|172047415|sp|A5F2T4|TRUA_VIBC3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764874|sp|C3LTP7|TRUA_VIBCM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9655462|gb|AAF94160.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548411|gb|EAX58471.1| tRNA pseudouridine synthase A [Vibrio cholerae 2740-80] gi|126509619|gb|EAZ72213.1| tRNA pseudouridine synthase A [Vibrio cholerae NCTC 8457] gi|146316655|gb|ABQ21194.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|183012826|gb|EDT88126.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-3] gi|227009061|gb|ACP05273.1| tRNA pseudouridine synthase A [Vibrio cholerae M66-2] gi|227012816|gb|ACP09026.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|229333681|gb|EEN99167.1| tRNA pseudouridine synthase A [Vibrio cholerae 12129(1)] gi|229344764|gb|EEO09738.1| tRNA pseudouridine synthase A [Vibrio cholerae RC9] gi|229350893|gb|EEO15834.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|229357625|gb|EEO22542.1| tRNA pseudouridine synthase A [Vibrio cholerae BX 330286] gi|229371076|gb|ACQ61499.1| tRNA pseudouridine synthase A [Vibrio cholerae MJ-1236] gi|254843834|gb|EET22248.1| tRNA pseudouridine synthase A [Vibrio cholerae MO10] gi|255737812|gb|EET93206.1| tRNA pseudouridine synthase A [Vibrio cholera CIRS 101] gi|262024387|gb|EEY43075.1| tRNA pseudouridine synthase A [Vibrio cholerae RC27] gi|262030961|gb|EEY49589.1| tRNA pseudouridine synthase A [Vibrio cholerae INDRE 91/1] gi|262033256|gb|EEY51775.1| tRNA pseudouridine synthase A [Vibrio cholerae CT 5369-93] gi|297536200|gb|EFH75033.1| tRNA pseudouridine synthase A [Vibrio cholerae RC385] gi|297543220|gb|EFH79270.1| tRNA pseudouridine synthase A [Vibrio cholerae MAK 757] Length = 264 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 SV+Y Sbjct: 238 LVSVDY 243 >gi|251778715|ref|ZP_04821635.1| tRNA pseudouridine synthase A [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083030|gb|EES48920.1| tRNA pseudouridine synthase A [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 244 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 133/242 (54%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIE++G+ + GWQRQ ++QG +E AI +TGE + +G+ RTD GVHA VA+F Sbjct: 6 LIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITGEKSLTNGSSRTDGGVHAKAMVANF- 64 Query: 66 LVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +P +ALN K+ D ISI+ VD +FHAR+S+ + Y Y I+ R LA Sbjct: 65 ITNSSIPGEKFREALNT--KLPDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRYEKLA 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 K + K L+ E+M+ A ++ VG+HDF F S A + +RTI F + N+I Sbjct: 123 FGKQYLHHVRKELNVEDMKKACEYFVGKHDFKAFMSPGSSAKTTVRTITDFYIEENKNVI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG+L VG GK D+ + RK G PP GL + V Sbjct: 183 RIFISADGFLYNMVRIIVGTLINVGTGKTKLQDVNNIINDGIRKNAGMCVPPNGLVLEKV 242 Query: 245 EY 246 Y Sbjct: 243 FY 244 >gi|229143213|ref|ZP_04271645.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST24] gi|229177012|ref|ZP_04304407.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 172560W] gi|228606487|gb|EEK63913.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 172560W] gi|228640294|gb|EEK96692.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST24] Length = 250 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|229015811|ref|ZP_04172787.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273] gi|229022018|ref|ZP_04178574.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272] gi|228739274|gb|EEL89714.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272] gi|228745470|gb|EEL95496.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273] Length = 250 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 244 YLESVEF 250 >gi|146293537|ref|YP_001183961.1| tRNA pseudouridine synthase A [Shewanella putrefaciens CN-32] gi|166229836|sp|A4Y879|TRUA_SHEPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145565227|gb|ABP76162.1| tRNA pseudouridine synthase A [Shewanella putrefaciens CN-32] gi|319426837|gb|ADV54911.1| tRNA pseudouridine synthase A [Shewanella putrefaciens 200] Length = 261 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ +V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLERALSIVANEPIGLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA + D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFDTNAIRNEGAWTLGVNA--NLPDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGNIDADKMHQAAQVLLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|82544799|ref|YP_408746.1| tRNA pseudouridine synthase A [Shigella boydii Sb227] gi|123728357|sp|Q31YE0|TRUA_SHIBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81246210|gb|ABB66918.1| pseudouridylate synthase I [Shigella boydii Sb227] gi|332093646|gb|EGI98704.1| tRNA pseudouridine synthase A [Shigella boydii 3594-74] Length = 270 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L D I++ + V FHARFSA R Y Y I R P L Sbjct: 76 APRKDAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|52144819|ref|YP_082010.1| tRNA pseudouridine synthase A [Bacillus cereus E33L] gi|62901422|sp|Q63GF1|TRUA2_BACCZ RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|51978288|gb|AAU19838.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A) [Bacillus cereus E33L] Length = 245 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|152984048|ref|YP_001347395.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7] gi|150959206|gb|ABR81231.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7] Length = 285 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/248 (41%), Positives = 137/248 (55%), Gaps = 9/248 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ+ G S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGVEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAESVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT--- 118 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PGDISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R A +A E W + LD E MR AAQ LVG HDFT+FR++ CQA SP++T+ H + Sbjct: 137 RPAHMAEEV--TW-NHRPLDIERMREAAQVLVGTHDFTSFRAVQCQARSPVKTMHHVRLL 193 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P G Sbjct: 194 EHGRLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYG 253 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 254 LYLVRVEY 261 >gi|75761576|ref|ZP_00741532.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895546|ref|YP_002443957.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|228899172|ref|ZP_04063442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 4222] gi|228963570|ref|ZP_04124723.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|74490946|gb|EAO54206.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543347|gb|ACK95741.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|228796088|gb|EEM43543.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860441|gb|EEN04831.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 4222] Length = 245 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|170754451|ref|YP_001781475.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] gi|169119663|gb|ACA43499.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] Length = 246 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQCSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++I + FLH IR G+L +G S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDSYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|253988932|ref|YP_003040288.1| tRNA pseudouridine synthase A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780382|emb|CAQ83543.1| tRNA pseudouridine synthase A [Photorhabdus asymbiotica] Length = 264 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 139/246 (56%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ SIQG +E+A+ V E + V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGSQYYGWQRQQEVKSIQGCLEQALSKVADEPISVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ + +NA+L I++ + VD+ FHARFSA R Y Y I R Sbjct: 61 VHFETSAQRKDAAWTMGVNAHLPAD--IAVRWVKTVDEDFHARFSATARRYRYIIFNHRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G LD + M AAQ+L+G +DFT+FR++ CQ+ +P R + H +VN + Sbjct: 119 RPAVLASGVTHFY-YPLDEKRMHQAAQYLLGENDFTSFRAVQCQSKTPWRNVMHINVNRY 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I + A +F+H +R+ GSL +G G + + L +DR + A GLY Sbjct: 178 GHYVVIDIKANAFVHHMVRNIAGSLMEIGCGNQDINWMARLLALKDRTKAAATAKSAGLY 237 Query: 241 FDSVEY 246 +V+Y Sbjct: 238 LVAVDY 243 >gi|228950979|ref|ZP_04113100.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808706|gb|EEM55204.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 250 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNLFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|150020829|ref|YP_001306183.1| tRNA pseudouridine synthase ACD [Thermosipho melanesiensis BI429] gi|166229846|sp|A6LLJ7|TRUA_THEM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149793350|gb|ABR30798.1| tRNA pseudouridine synthase A [Thermosipho melanesiensis BI429] Length = 244 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 143/246 (58%), Gaps = 6/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + Y+G+ +FG+Q Q N ++QG +EKA+ + E + GAGRTD+GVHA Q Sbjct: 1 MKRFAIEFSYDGTNFFGYQGQPNVRTVQGELEKALERIFKERIFTQGAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F+ + + I K ALNA L + I + V+K F+ RF A +R Y Y + T Sbjct: 61 VAAFNCPIDRLAAIDIKNALNANL--PEDIYVKKAWEVEKNFNPRFRAKKRIYHYLVSTN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-N 178 + + ++ W L+ E MRIAA++L G HDF++F+ + + +PIRT+ + N Sbjct: 119 EKDV-FKRNYVWHFKYKLNIEAMRIAARYLEGEHDFSSFKKGNDK-KNPIRTVYRIRILN 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 LI IRV RSFL + +R+ VGSL VG G+WT ++K L+A+ R+E APP G Sbjct: 177 VKKELILIRVEGRSFLRSMVRNIVGSLVRVGLGQWTPEKIKKVLEARSRQEAAGTAPPHG 236 Query: 239 LYFDSV 244 LY V Sbjct: 237 LYLYKV 242 >gi|194099947|ref|YP_002003085.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae NCCP11945] gi|240017604|ref|ZP_04724144.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA6140] gi|240114197|ref|ZP_04728687.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|240116830|ref|ZP_04730892.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|254494689|ref|ZP_05107860.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291] gi|268600271|ref|ZP_06134438.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|268602508|ref|ZP_06136675.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|238693230|sp|B4RR02|TRUA_NEIG2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193935237|gb|ACF31061.1| TruA [Neisseria gonorrhoeae NCCP11945] gi|226513729|gb|EEH63074.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291] gi|268584402|gb|EEZ49078.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|268586639|gb|EEZ51315.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|317165398|gb|ADV08939.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107] Length = 265 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDITAARPQQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRTDLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|49476819|ref|YP_034755.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|62901429|sp|Q6HNW5|TRUA2_BACHK RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|49328375|gb|AAT59021.1| tRNA pseudouridine synthase I (tRNA pseudouridine synthase A) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 245 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHNRFHARYNSKVKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|332970287|gb|EGK09279.1| tRNA pseudouridine synthase A [Kingella kingae ATCC 23330] Length = 265 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 138/250 (55%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS +FGWQ+Q +G ++Q ++E A+ + GE + AGRTD+GVHA Q+ Sbjct: 8 RFALTVSYDGSQFFGWQKQADGVVTVQAALEHALSCIAGEPIATIAAGRTDTGVHATGQI 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD + WV + +NA+L D +++L V+ FHARF A R Y Y + Sbjct: 68 VHFDTQAHRPLSAWV-----RGVNAHLP--DGVAVLAAQAVEPAFHARFDATGRRYRYLL 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L RA +L+ + M+ A L+G HDF++FR+ CQA SPI+T+ Sbjct: 121 ESAPVRSPLLYRRAGWTHYALNTDPMQAAMNLLLGEHDFSSFRAAQCQAKSPIKTMYAAQ 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G LI++ A +FLH +R+ VG+L VG G+ + D L + R P P Sbjct: 181 LQRAGCLIKLDFHANAFLHHMVRNLVGALVYVGCGRLSVADFADLLAQKSRLTAPPTFMP 240 Query: 237 EGLYFDSVEY 246 +GLYF V+Y Sbjct: 241 DGLYFVGVDY 250 >gi|227114786|ref|ZP_03828442.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 283 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 136/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 23 LKIALGIEYDGSLYYGWQRQIDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQV 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +NA L I++ + VD+ FHARFSA R Y Y I R Sbjct: 83 VHFTTHAIRKDAAWTMGVNANLPPD--IAVRWVKTVDEDFHARFSATARRYRYVIYNHRY 140 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V Sbjct: 141 RPAVLSRGMTHFY-HPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRYVNHLKVTRH 199 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 200 GDYIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLAAKDRTLAGATARAEGLY 259 Query: 241 FDSVEY 246 +V+Y Sbjct: 260 LVAVDY 265 >gi|221134792|ref|ZP_03561095.1| tRNA pseudouridine synthase A [Glaciecola sp. HTCC2999] Length = 264 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/249 (38%), Positives = 134/249 (53%), Gaps = 16/249 (6%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M +EY G+ ++GWQRQ N S+Q ++E A V E V + +GRTD+GVHA Q+ +F Sbjct: 6 AMAVEYYGADFYGWQRQDNVPSVQQALEDAASFVADEKVNIICSGRTDAGVHATYQIVNF 65 Query: 65 DLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + W L K D I++ V FHARFSA R Y Y I Sbjct: 66 KTSAKRDEKAWT-------LGVTTKTPDAIAVKWAVEVPDTFHARFSATARRYRYIIYNH 118 Query: 120 QAPLA-LEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P A L KG +P LD + M AAQ LVG HDFT+FR+ CQ+ +P R I +V Sbjct: 119 RVPPAILAKGLTHCYLP--LDAQKMHEAAQVLVGEHDFTSFRAALCQSKTPFRNIHFVNV 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I + A +FLH +R+ GSL L+G G+ + L++ L+ +DR + G A P Sbjct: 177 QRVGEYVIIDIKANAFLHHMVRNIAGSLMLIGAGEQPLSWLQEILEIKDRTQAGVTAKPN 236 Query: 238 GLYFDSVEY 246 GLYF V+Y Sbjct: 237 GLYFVDVDY 245 >gi|49183490|ref|YP_026742.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|165870784|ref|ZP_02215437.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167634709|ref|ZP_02393028.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0442] gi|167640831|ref|ZP_02399090.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|170688574|ref|ZP_02879780.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|170707209|ref|ZP_02897665.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0389] gi|177654958|ref|ZP_02936652.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|227816641|ref|YP_002816650.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|229600408|ref|YP_002865093.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|254686878|ref|ZP_05150736.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066] gi|254725958|ref|ZP_05187740.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055] gi|254738895|ref|ZP_05196597.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western North America USA6153] gi|254743721|ref|ZP_05201406.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254744486|ref|ZP_05202165.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254756260|ref|ZP_05208289.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum] gi|254762079|ref|ZP_05213928.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] gi|270000592|ref|YP_003329030.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] gi|291612202|ref|YP_003541016.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|62901431|sp|Q6I3T8|TRUA2_BACAN RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|49177417|gb|AAT52793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|164713618|gb|EDR19142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167511225|gb|EDR86612.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|167529783|gb|EDR92531.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0442] gi|170127987|gb|EDS96858.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0389] gi|170667434|gb|EDT18191.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|172080343|gb|EDT65431.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|224552835|gb|ACN55049.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|227002712|gb|ACP12455.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|229264816|gb|ACQ46453.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|269850281|gb|ACZ49994.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] Length = 245 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|229188692|ref|ZP_04315731.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 10876] gi|228594881|gb|EEK52661.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 10876] Length = 250 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|329120625|ref|ZP_08249288.1| tRNA pseudouridine synthase A [Neisseria bacilliformis ATCC BAA-1200] gi|327460849|gb|EGF07183.1| tRNA pseudouridine synthase A [Neisseria bacilliformis ATCC BAA-1200] Length = 269 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +I+ Y+GS +FGWQ+Q G ++Q ++E+A+ + GE + V AGRTD+GVHA QV Sbjct: 8 RRALIVAYDGSRFFGWQKQAGGVPTVQAALEEALSGIAGERIAVTAAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + N+ L + +++L + V FHARF A R Y Y + + Sbjct: 68 VHFDTAAERPGQAWVRGTNSLLP--EGVAVLRVHNVPPHFHARFDACGRRYRYVLQSAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L GRA LD MR AA LVG HDF++FR+ CQA SP++T+ ++ Sbjct: 126 RSPLLAGRAGWTHTPLDPAPMREAAALLVGTHDFSSFRAAECQAKSPVKTLYSVRLSGTA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + +FLH +R+ VG+L VG G+ + + + A+ R + P P+GLY Sbjct: 186 RFMALDLHGNAFLHHMVRNIVGALVYVGSGRLSVAGFAELIAAKSRLKAPPTFMPDGLYL 245 Query: 242 DSVEYS 247 +Y Sbjct: 246 TGADYP 251 >gi|260549154|ref|ZP_05823375.1| tRNA-pseudouridine synthase I [Acinetobacter sp. RUH2624] gi|260407882|gb|EEX01354.1| tRNA-pseudouridine synthase I [Acinetobacter sp. RUH2624] Length = 265 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 134/248 (54%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADESIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + + N+ ++ ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPEMGWLRGANS--QLPKDISIQWIKLMDENFHARFKATARRYRYVIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PCRPALLHKQVTHIYQQLDVQKMIKAASKFEGTHNFETFRAAACQSNKPVRHVTHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDTMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCYYP 246 >gi|77458123|ref|YP_347628.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf0-1] gi|77382126|gb|ABA73639.1| pseudouridylate synthase I [Pseudomonas fluorescens Pf0-1] Length = 274 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 137/252 (54%), Gaps = 15/252 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y GWQRQ G ++Q ++EKA+ V + + AGRTD+GVHA Q Sbjct: 7 FRVALGVEYKGSRYSGWQRQSTGVLTVQETLEKALSKVADSPISLQCAGRTDAGVHACGQ 66 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD ++ WV + A + + IS+ I+ FHARF AI R Y Y Sbjct: 67 VVHFDTQVDRSLKAWV-------MGANINLPHDISVSWAKIMPAHFHARFKAIARRYRYV 119 Query: 116 IITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I Q P L + W + LD E M AAQ+L+G HDF+ FR+ CQA SPI+ + H Sbjct: 120 IYNDQIRPAHLNEEITW-NHRPLDVERMAEAAQYLIGTHDFSAFRAGQCQAKSPIKQMHH 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G +I + + A +FLH +R+ G L +G G+ +++ L++++R+ G A Sbjct: 179 LRVTRHGKMIVLDIRANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTA 238 Query: 235 PPEGLYFDSVEY 246 P GLY VEY Sbjct: 239 HPFGLYLVQVEY 250 >gi|229042328|ref|ZP_04190078.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH676] gi|228726987|gb|EEL78194.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH676] Length = 250 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|109897925|ref|YP_661180.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c] gi|123064742|sp|Q15VG2|TRUA_PSEA6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109700206|gb|ABG40126.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c] Length = 263 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ + GWQRQ S+Q +E+A+ + E + V AGRTD+GVHA QV Sbjct: 1 MRIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N YL DTIS+ + V + FHARFSA R Y Y I Sbjct: 61 VHFETTSQRPDRAWTLGINTYL--PDTISVRWVKAVPEDFHARFSATARRYRYIIYNNTL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + I LD E M AAQ LVG+HDF++FR+++CQA + RT+ H V G Sbjct: 119 RSGILANGVTHIYGDLDHELMHEAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V A +FLH +R+ G+L +G + +++ L+ +DR + G A P GLY Sbjct: 179 DYIVIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VHVTY 243 >gi|229077782|ref|ZP_04210409.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-2] gi|228705510|gb|EEL57869.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-2] Length = 245 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HL+G HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLIGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|229165426|ref|ZP_04293210.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621] gi|228618024|gb|EEK75065.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621] Length = 268 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 262 YLENVEF 268 >gi|114046997|ref|YP_737547.1| tRNA pseudouridine synthase A [Shewanella sp. MR-7] gi|123131546|sp|Q0HWL5|TRUA_SHESR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113888439|gb|ABI42490.1| tRNA pseudouridine synthase A [Shewanella sp. MR-7] Length = 261 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANLP--DNIAVRWAKEVDDSFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR+I CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDADKMHVAAQALLGEQDFTSFRAIQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|153216039|ref|ZP_01950244.1| tRNA pseudouridine synthase A [Vibrio cholerae 1587] gi|153829544|ref|ZP_01982211.1| tRNA pseudouridine synthase A [Vibrio cholerae 623-39] gi|254226230|ref|ZP_04919824.1| tRNA pseudouridine synthase A [Vibrio cholerae V51] gi|254291873|ref|ZP_04962656.1| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226] gi|124114489|gb|EAY33309.1| tRNA pseudouridine synthase A [Vibrio cholerae 1587] gi|125621266|gb|EAZ49606.1| tRNA pseudouridine synthase A [Vibrio cholerae V51] gi|148875004|gb|EDL73139.1| tRNA pseudouridine synthase A [Vibrio cholerae 623-39] gi|150422233|gb|EDN14197.1| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226] gi|327483717|gb|AEA78124.1| tRNA pseudouridine synthase A [Vibrio cholerae LMA3894-4] Length = 264 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTSAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 SV+Y Sbjct: 238 LVSVDY 243 >gi|153939803|ref|YP_001391236.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|152935699|gb|ABS41197.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] Length = 246 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVNLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|229154192|ref|ZP_04282315.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 4342] gi|228629282|gb|EEK85986.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 4342] Length = 250 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVVSEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|295700767|ref|YP_003608660.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1002] gi|295439980|gb|ADG19149.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1002] Length = 270 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ T V AGRTD GVH L Q Sbjct: 1 MKRIALGVQYDGAAFAGWQSQPHGNTVQDELERALREFTRTPVQTVVAGRTDRGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + + NA+L TI + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRVDISWVRGPNAFLP--KTIGVQWAKPMPDDFHARFSAFERTYYYVLYVSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + LD + MR AA+HL+G HDF+ FRS CQ+ +P + + DV Sbjct: 119 VRSPMLTTRAGWVHTPLDVDAMRSAAEHLIGEHDFSAFRSSQCQSKTPFKHLYRIDVKRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + R A +FLH +R+ +G L +G G+ + + L ++ R P P+GLY Sbjct: 179 GNFVHFRFRANAFLHHMVRNVMGCLIEIGSGRRPAAWMADVLASRSRDCAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|254362514|ref|ZP_04978619.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica PHL213] gi|153094111|gb|EDN75015.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica PHL213] Length = 261 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 140/252 (55%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I Sbjct: 61 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFN--- 115 Query: 122 PLALEKGRAWLIPKS-------LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +K R+ ++PK LD M A Q+L+G +DF++FR+ CQ+++P R I H Sbjct: 116 ----QKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V+ GN + + + A +F+H +R+ VG+L +G G+ + L+ +DR++ P A Sbjct: 172 LNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWVLEQRDREKAAPTA 231 Query: 235 PPEGLYFDSVEY 246 EGLY V Y Sbjct: 232 KAEGLYLVEVHY 243 >gi|225862468|ref|YP_002747846.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|225790549|gb|ACO30766.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] Length = 245 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|15677859|ref|NP_275027.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58] gi|25009507|sp|Q9JXI2|TRUA_NEIMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|7227297|gb|AAF42357.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58] gi|316983916|gb|EFV62895.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76] gi|325201083|gb|ADY96538.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76] Length = 265 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIGQMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYRADLTQSS 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|262280848|ref|ZP_06058631.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus RUH2202] gi|262257748|gb|EEY76483.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus RUH2202] Length = 265 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 133/248 (53%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + V E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKVANEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ ++ ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTHAIRPETGWLRGANS--QLPKDISIQWIKLMDESFHARFKATARRYRYIIYNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQPLDVQKMIEAASKFEGTHNFESFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEINHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCNYP 246 >gi|331091743|ref|ZP_08340575.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330402642|gb|EGG82209.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 245 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +I+ + KA+ +TGE +VV GA RTDSGVHA+ Sbjct: 1 MRRVKLTIAYDGTNYCGWQIQPNGITIEEIVNKALSKLTGEKIVVIGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + A+N L + I ++ V FH R+ ++Y Y I+ + Sbjct: 61 VAVFDTETTIPPERVAMAVNRIL--PEDIVVVKSEEVPLDFHPRYCDCEKTYEYHIVNTR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ ++ + + LD + MR A +L+G HDF +F +I S +RT+ ++ Sbjct: 119 IPIPTKRLTNYFVSYELDLDKMREGASYLIGEHDFASFCNIKTDVESTVRTVKELEILEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G + +++ L+A++RK G APP GL Sbjct: 179 GEEITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPVQVKEILEAKNRKAAGVTAPPHGLM 238 Query: 241 FDSVEYS 247 + Y+ Sbjct: 239 LMEIRYN 245 >gi|257092844|ref|YP_003166485.1| tRNA pseudouridine synthase A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045368|gb|ACV34556.1| tRNA pseudouridine synthase A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 266 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GSG+ GWQ Q G ++Q +++ A+ G V V AGRTD+GVHA QV Sbjct: 1 MRIALAVEYDGSGFRGWQTQPGGGTVQDAVQDALRQFAGVPVQVVSAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + N++L +++ V FHARFSA R Y Y +I R Sbjct: 61 VHFDAAVERSMFAWVRGTNSFLP--SAVAVRWARPVADDFHARFSAYARRYRYLLINRAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR LD M+ AA L+G DF+ FR+ CQA+SP++ + V FG Sbjct: 119 RTGVWNGRVGWYHHPLDVGTMQAAAHLLLGERDFSAFRAAECQANSPVKVMREAHVRRFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LI A +FLH +R+ VGSL VG GK + + L A DR+ P GLY Sbjct: 179 DLIAFDFEASAFLHHMVRNLVGSLVHVGQGKRPPEWIGELLAAGDRRLAAPTFAAAGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 FAVRY 243 >gi|168184901|ref|ZP_02619565.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|237795344|ref|YP_002862896.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] gi|182672019|gb|EDT83980.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|229263868|gb|ACQ54901.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] Length = 246 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|269102116|ref|ZP_06154813.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp. damselae CIP 102761] gi|268162014|gb|EEZ40510.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp. damselae CIP 102761] Length = 261 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ YFGWQRQ+ S+Q +EKA+ + E V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYFGWQRQREVDSVQERLEKALAKIANEPVDVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ +NA+L SD I++ + V FHARF+A R Y Y I Sbjct: 61 VHFDVNVNRKMAAWTMGVNAHLP-SD-IAVRWAAEVSDDFHARFTATARRYRYVIYNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H +V+ G Sbjct: 119 RPAILSSGVSHYHGDLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + A +F+H +R+ GSL VG G+ ++ L+ +DR G A EGLY Sbjct: 179 NYVIIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEQKDRTLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|117919927|ref|YP_869119.1| tRNA pseudouridine synthase A [Shewanella sp. ANA-3] gi|166229837|sp|A0KV94|TRUA_SHESA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|117612259|gb|ABK47713.1| tRNA pseudouridine synthase A [Shewanella sp. ANA-3] Length = 261 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWAKEVDDTFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR+I CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDTDKMHVAAQALLGEQDFTSFRAIQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|87121856|ref|ZP_01077742.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121] gi|86162885|gb|EAQ64164.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121] Length = 275 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EY GS Y GWQ QK + ++Q +E+A+ + + V AGRTD+ VHA QV Sbjct: 5 KVALVVEYKGSEYKGWQAQKYDVPTVQKCLEEALSKIAAHTIKVVCAGRTDASVHASAQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E +N+ L I+++ + + FHARFSA+ R Y Y I + Sbjct: 65 VHFETDVERSERAWTLGVNSNL--PKDIAVVAAANMHPSFHARFSAVSRRYRYVIYSHPL 122 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + K W K LD M+ AA+ VG+HDF++FR++ CQA +P+RTI +F++ Sbjct: 123 RPAIMSKEVTW-THKKLDILKMQQAAKVFVGKHDFSSFRAVGCQAHTPVRTILNFEIYQS 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +FLH IR+F G L +G G+ + K L A+DR + G PPEGLY Sbjct: 182 GQYIVLDIRANAFLHHMIRNFAGVLMTIGAGEEEVSWASKVLAAKDRTKGGITGPPEGLY 241 Query: 241 FDSVEY 246 F EY Sbjct: 242 FVDAEY 247 >gi|187921475|ref|YP_001890507.1| tRNA pseudouridine synthase A [Burkholderia phytofirmans PsJN] gi|238691591|sp|B2T9N4|TRUA_BURPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187719913|gb|ACD21136.1| tRNA pseudouridine synthase A [Burkholderia phytofirmans PsJN] Length = 270 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q + +++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHRNTVQDELERALREFARTPVQTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRADVSWVRGTNSFLP--KTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + SLD + M+ AA HL+G HDF+ FRS CQA +P++ + DV Sbjct: 119 VRSPMLATRAGWVHTSLDVDAMQKAAAHLLGEHDFSAFRSSQCQAKTPVKHLYQIDVKQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L ++DR P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNLMGCLVYIGGGRRPVEWMAEVLASRDRDFAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|229009911|ref|ZP_04167130.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048] gi|229131424|ref|ZP_04260320.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196] gi|228652008|gb|EEL07949.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196] gi|228751342|gb|EEM01149.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048] Length = 268 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 262 YLENVEF 268 >gi|330810793|ref|YP_004355255.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378901|gb|AEA70251.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 284 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 137/251 (54%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EYNGS Y GWQRQ +G ++Q ++E A+ V V +H AGRTD+GVHA QV Sbjct: 18 RIALGVEYNGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLHCAGRTDAGVHACGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQVERSMKAWV-------MGANINLPHDVSVSWAKVMPAHFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AAQ+LVG HDF+ FR+ CQA SPI+ + H Sbjct: 131 YNDQIRPAHLNEEITW-NHRPLDVERMAEAAQYLVGVHDFSAFRAGQCQAKSPIKELHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I + + A +FLH +R+ G L +G G+ +++ L ++ R+ G A Sbjct: 190 RVTRHGKMIVLDIRASAFLHHMVRNIAGVLMTIGAGERPVEWIKEVLDSRIRRSGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PFGLYLVQVEY 260 >gi|148379875|ref|YP_001254416.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 3502] gi|153930931|ref|YP_001384172.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|153935153|ref|YP_001387713.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] gi|148289359|emb|CAL83455.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC 3502] gi|152926975|gb|ABS32475.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|152931067|gb|ABS36566.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] Length = 246 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++I + FLH IR G+L +G S D++ L A+DR++ GP AP +GL Sbjct: 179 KDSYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILDAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|42779623|ref|NP_976870.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] gi|51316696|sp|Q73E17|TRUA2_BACC1 RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|42735539|gb|AAS39478.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] Length = 245 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|292488882|ref|YP_003531769.1| pseudouridylate synthase I [Erwinia amylovora CFBP1430] gi|292900028|ref|YP_003539397.1| tRNA pseudouridine synthase A [Erwinia amylovora ATCC 49946] gi|291199876|emb|CBJ47000.1| tRNA pseudouridine synthase A [Erwinia amylovora ATCC 49946] gi|291554316|emb|CBA21677.1| pseudouridylate synthase I [Erwinia amylovora CFBP1430] gi|312173042|emb|CBX81297.1| pseudouridylate synthase I [Erwinia amylovora ATCC BAA-2158] Length = 271 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH+ QV Sbjct: 11 MKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALTRVADGPIAVFCAGRTDAGVHSTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V FHARFSA R Y Y I R+ Sbjct: 71 VHFETTAQRKDAAWTLGVNANLPAD--IAVRWVKSVPDDFHARFSATARRYRYVIYNRRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G Sbjct: 129 RPAILAAGVTHFYHPLDVEKMQSAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLNVSRHG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + + L A+DRK A EGLY Sbjct: 189 AYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMSELLAAKDRKLAAATARAEGLYL 248 Query: 242 DSVEY 246 +V+Y Sbjct: 249 VAVDY 253 >gi|113969768|ref|YP_733561.1| tRNA pseudouridine synthase A [Shewanella sp. MR-4] gi|123325149|sp|Q0HKB3|TRUA_SHESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113884452|gb|ABI38504.1| tRNA pseudouridine synthase A [Shewanella sp. MR-4] Length = 261 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANLP--DNIAVRWAKEVDDSFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR++ CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDADKMHVAAQALLGEQDFTSFRAVQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|188590732|ref|YP_001919706.1| tRNA pseudouridine synthase A [Clostridium botulinum E3 str. Alaska E43] gi|238689635|sp|B2UYE4|TRUA_CLOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188501013|gb|ACD54149.1| tRNA pseudouridine synthase A [Clostridium botulinum E3 str. Alaska E43] Length = 244 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 133/242 (54%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIE++G+ + GWQRQ ++QG +E AI +TGE + +G+ RTD GVHA VA+F Sbjct: 6 LIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITGEKSLTNGSSRTDGGVHAKAMVANF- 64 Query: 66 LVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +P +ALN K+ D ISI+ VD +FHAR+S+ + Y Y I+ R LA Sbjct: 65 ITNSSIPGEKFREALNT--KLPDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRYEKLA 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 K + K L+ E+M+ A ++ +G+HDF F S A + +RTI F + N+I Sbjct: 123 FGKQYLHHVRKELNVEDMKKACEYFLGKHDFKAFMSPGSSAKTTVRTITDFYIEENKNVI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG+L VG GK D+ + RK G PP GL + V Sbjct: 183 RIFISADGFLYNMVRIIVGTLINVGTGKTKLQDVNNIINDGIRKNAGMCVPPNGLVLEKV 242 Query: 245 EY 246 Y Sbjct: 243 FY 244 >gi|228956904|ref|ZP_04118685.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802747|gb|EEM49583.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 250 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGVRFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|229148825|ref|ZP_04277073.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1550] gi|228634619|gb|EEK91200.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1550] Length = 250 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDVEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|15598310|ref|NP_251804.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO1] gi|107102663|ref|ZP_01366581.1| hypothetical protein PaerPA_01003728 [Pseudomonas aeruginosa PACS2] gi|218890685|ref|YP_002439549.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa LESB58] gi|254236084|ref|ZP_04929407.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719] gi|254241809|ref|ZP_04935131.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192] gi|296388384|ref|ZP_06877859.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAb1] gi|313108437|ref|ZP_07794441.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016] gi|8134770|sp|O87016|TRUA_PSEAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9949225|gb|AAG06502.1|AE004735_9 tRNA-pseudouridine synthase I [Pseudomonas aeruginosa PAO1] gi|3237313|gb|AAC23941.1| HisT [Pseudomonas aeruginosa PAO1] gi|126168015|gb|EAZ53526.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719] gi|126195187|gb|EAZ59250.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192] gi|218770908|emb|CAW26673.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa LESB58] gi|310880943|gb|EFQ39537.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016] Length = 285 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 136/249 (54%), Gaps = 9/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ+ G S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT--- 118 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANLPAD--ISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R A LA E W + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + Sbjct: 137 RPAHLAEEV--TWNH-RPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLL 193 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P G Sbjct: 194 EHGRLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYG 253 Query: 239 LYFDSVEYS 247 LY VEY Sbjct: 254 LYLVRVEYP 262 >gi|319789624|ref|YP_004151257.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1] gi|317114126|gb|ADU96616.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1] Length = 254 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 138/251 (54%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + +EY G+ Y+GWQ + ++QG I + + V V + GA RTD+GVHA Q Sbjct: 1 MRNFKLTVEYLGTNYYGWQFLPDKPTVQGEIIRCLETVLRHPVKLIGASRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +E L ALN L I + + V +FHAR SA + Y YR+ R Sbjct: 61 VANFLTAKEVSCEKLLSALNGLL--PPDIRVKEVEEVPLEFHARRSARGKLYRYRLFIRD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 P E R+W + ++L E MR A Q LVG HDFTTF +S + +PIRTID ++ + Sbjct: 119 VPSPFEFRRSWYLRRTLSVEPMREATQFLVGTHDFTTFSKSERKREVNPIRTIDKIEITN 178 Query: 180 F----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G L+E+ RSFL +R V +L VG G+ ++++ LQA+DR LAP Sbjct: 179 KEWEEGVLVELLFTGRSFLRHMVRVIVATLVKVGTGEVKPQEVKEMLQAKDRSRAPFLAP 238 Query: 236 PEGLYFDSVEY 246 P+GLY + V Y Sbjct: 239 PDGLYLERVFY 249 >gi|163938417|ref|YP_001643301.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] gi|163860614|gb|ABY41673.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] Length = 245 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 119 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|323977481|gb|EGB72567.1| tRNA pseudouridine synthase A [Escherichia coli TW10509] Length = 270 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|161869166|ref|YP_001598332.1| tRNA pseudouridine synthase A [Neisseria meningitidis 053442] gi|189030137|sp|A9M0B8|TRUA_NEIM0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|161594719|gb|ABX72379.1| tRNA pseudouridine synthase [Neisseria meningitidis 053442] Length = 265 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 138/250 (55%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD V+ WV + +NA+L + I++L+ V +FHARF A R Y Y + Sbjct: 68 VHFDTAAVRPVQAWV-----RGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLL 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L K RA LD MR AA L+G DF++FR+ CQA SP++TI D Sbjct: 121 ESAPVRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRAD 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P Sbjct: 181 LTQSSGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMP 240 Query: 237 EGLYFDSVEY 246 +GLY V+Y Sbjct: 241 DGLYLTGVDY 250 >gi|330829261|ref|YP_004392213.1| tRNA pseudouridine synthase A [Aeromonas veronii B565] gi|328804397|gb|AEB49596.1| tRNA pseudouridine synthase A [Aeromonas veronii B565] Length = 269 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +E A+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQAELETALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTEANRAEGAWTLGLNSNLP--PDIAVRWVKQVDESFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ ++++ E M A Q L+G HDF+TFR++ CQ+++P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETINAELMHQAGQSLLGEHDFSTFRAVACQSNTPWRNVTHLCVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR GP A GLY Sbjct: 179 PYIVLDIRANAFLHHMVRNITGSLLLVGQGLKPVEWIAEVLAAKDRNLAGPTAKAGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|261346179|ref|ZP_05973823.1| tRNA pseudouridine synthase A [Providencia rustigianii DSM 4541] gi|282565835|gb|EFB71370.1| tRNA pseudouridine synthase A [Providencia rustigianii DSM 4541] Length = 271 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 137/247 (55%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + R + IEYNGS Y+GWQRQ+ S+QG +E+A+ + E + V+ AGRTD+GVHA Q Sbjct: 7 LYRIALGIEYNGSRYYGWQRQQEVKSVQGCLEEALSKIAAEPISVNCAGRTDAGVHATGQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-R 119 V HF+ N +L I++ VD++FHARFSA R Y Y I R Sbjct: 67 VVHFETTAIRKEAAWTMGANTHL--PPDIAVRWCKPVDEEFHARFSATARRYRYVIFNHR 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L G LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V Sbjct: 125 YRPAILSNGVTHF-HYPLDEKRMHQAAQALLGENDFTSFRAVQCQSRTPWRNVMHVNVTR 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + + + A +F+H +R+ VGSL +G G + + L+ +DR + A EGL Sbjct: 184 HGNYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMHQLLELKDRTKAAATAKAEGL 243 Query: 240 YFDSVEY 246 Y SV+Y Sbjct: 244 YLVSVDY 250 >gi|229083731|ref|ZP_04216052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44] gi|228699589|gb|EEL52253.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44] Length = 268 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y I+Y+G+ Y GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKFTIQYDGARYKGWQRLGNNDNTIQGKIESVLSEMVGQEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ V ++FHAR+++ ++YLY+I Sbjct: 84 QVANFKIEEKLSEPKVKKYLNQYL--PNDISITDVEQVPERFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AAQ+L+G HDFT F + + S +R + DV Sbjct: 142 EHTNPFMRKYSMHVQKKLNIESMQKAAQYLIGSHDFTAFSNAKSKKKSMVREVYMLDVAE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 202 SEGFIQIRVSGNGFLHNMVRKIVGALVEVGLGQLDADAIPQILEAKQRNQINCLADASGL 261 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 262 YLEKVDF 268 >gi|92113385|ref|YP_573313.1| tRNA pseudouridine synthase A [Chromohalobacter salexigens DSM 3043] gi|91796475|gb|ABE58614.1| tRNA pseudouridine synthase A [Chromohalobacter salexigens DSM 3043] Length = 290 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 134/244 (54%), Gaps = 8/244 (3%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M +EY+GS Y GWQR K+ +S+QG++E A+ + V V +GRTDSGVHA RQV HFD Sbjct: 1 MGVEYDGSAYCGWQRLKHAASVQGTLEAALSRIANAPVQVLCSGRTDSGVHATRQVVHFD 60 Query: 66 LVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 PV + A + +++ + V FHAR SA+ R Y Y I+ + + Sbjct: 61 -----APVTRTQKAWLFGANANLPRDVAVRWVVPVADDFHARLSALARRYRYVILNQPSR 115 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 LE+ A + LD E M AAQ LVG HDF++FR+ CQ+ S R + +V +G Sbjct: 116 PVLERANATWCREPLDAERMHAAAQALVGEHDFSSFRAAGCQSKSRWRHVHFIEVRRYGQ 175 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ I + A +FLH IR+ G+L VG G ++ L + L +DR + AP GL+F Sbjct: 176 LVVIDIQANAFLHHMIRNIAGALVAVGRGDHSTGYLGELLALRDRTQGNVTAPGCGLHFV 235 Query: 243 SVEY 246 Y Sbjct: 236 DALY 239 >gi|119775285|ref|YP_928025.1| tRNA pseudouridine synthase A [Shewanella amazonensis SB2B] gi|166229832|sp|A1S7J9|TRUA_SHEAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119767785|gb|ABM00356.1| pseudouridylate synthase [Shewanella amazonensis SB2B] Length = 261 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 136/251 (54%), Gaps = 14/251 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS ++GWQRQ +S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSKFYGWQRQAEVNSVQAELERALSIVANEPIEVQCAGRTDAGVHATGQV 60 Query: 62 AHFDL--VRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD VR+ W L + + D I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNAVRKEGAWT-------LGVNVHLPDDIAVRWAMPVNDDFHARFSATARRYRYVI 113 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P L KG + +D E M AAQ L+G DFT+FR+I CQ+++P R + Sbjct: 114 FNHNFRPGILRKGVSHY-HGDIDVERMHDAAQALIGERDFTSFRAIGCQSNTPFRNVHKV 172 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V+ G I + + A +FLH +R+ VGSL +G G + L+A+DR + A Sbjct: 173 SVSRHGMYIVVDIQANAFLHHMVRNIVGSLLEIGLGNQPLDWMATLLEAKDRSQAAATAK 232 Query: 236 PEGLYFDSVEY 246 P GLY V Y Sbjct: 233 PHGLYLVDVTY 243 >gi|301156483|emb|CBW15954.1| pseudouridylate synthase I [Haemophilus parainfluenzae T3T1] Length = 264 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 136/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y GWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKQYCGWQRQEKVRSVQEELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ + W A + D IS+ +VD +FHARFSA R Y Y Sbjct: 61 VHFETTAVRPEKAW-------AFGTNANLPDDISVSWAKVVDDEFHARFSATARRYRY-- 111 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 L K R+ ++P+ LD + M A Q L+G +DF++FR+ CQ+++P Sbjct: 112 -----ILYCNKLRSAILPEGITHCHLDLDEKKMHQAGQFLLGENDFSSFRAAQCQSNTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + H +V G + + + A +F+H +R+ VGSL VG G ++ L+ +DRK Sbjct: 167 RNVHHLNVVRKGQFVIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A PEGLY +V Y Sbjct: 227 AAPTAKPEGLYLVNVIY 243 >gi|299771694|ref|YP_003733720.1| tRNA pseudouridine synthase A [Acinetobacter sp. DR1] gi|298701782|gb|ADI92347.1| tRNA pseudouridine synthase A [Acinetobacter sp. DR1] Length = 265 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 133/248 (53%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + V E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKVANEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ ++ ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTHAIRPETGWLRGANS--QLPKDISIQWIKLMDESFHARFKATARRYRYIIYNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVKKMIEAASKFEGTHNFESFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIEADGFLHHMVRNIVGCLLEIGQGMYEIDHIDTMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCNYP 246 >gi|40063298|gb|AAR38116.1| tRNA pseudouridine synthase A [uncultured marine bacterium 578] Length = 247 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 140/252 (55%), Gaps = 15/252 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E A+ LV V V GRTDSGVHA Q Sbjct: 1 MKIALGVEYLGTNFNGWQIQKSGIRTVQEVVESALSLVANHPVRVFCCGRTDSGVHAKEQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HF+ WV + + ++ VD FHARF+A RSY Y+ Sbjct: 61 VIHFETDSNRSNEAWV-------FGGNVNLPSDVNFSWAKDVDDDFHARFNAYARSYEYK 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I +L P+SL+ + MR AA L+G HDF++FR CQA SP++T+++ Sbjct: 114 IHNHPVRSSLNANYYLWEPRSLNIDEMRKAANFLIGEHDFSSFRGRLCQAKSPVKTVEYL 173 Query: 176 DV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 D+ S NLI +++ A +FLH +R+ VG+L +G G+ + + L+++DR+E GP A Sbjct: 174 DIIESDDNLI-VKIKANAFLHHMVRNIVGTLLKIGRGERDAEWMLSVLESKDRREAGPTA 232 Query: 235 PPEGLYFDSVEY 246 P+GLYF Y Sbjct: 233 EPQGLYFIKAYY 244 >gi|325135431|gb|EGC58051.1| tRNA pseudouridine synthase A [Neisseria meningitidis M0579] Length = 265 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGESVATTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKHRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|295319272|gb|ADF99649.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613] Length = 246 Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FLH IR G+L VG S D + L+A+DR++ GP AP +GL Sbjct: 179 KDGYVNLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDCKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|258622013|ref|ZP_05717042.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573] gi|258585766|gb|EEW10486.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573] Length = 264 Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R I H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVEVDY 243 >gi|153001275|ref|YP_001366956.1| tRNA pseudouridine synthase A [Shewanella baltica OS185] gi|166229834|sp|A6WQ04|TRUA_SHEB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151365893|gb|ABS08893.1| tRNA pseudouridine synthase A [Shewanella baltica OS185] Length = 261 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+QG +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQGQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA + D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNA--NLPDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|50121981|ref|YP_051148.1| tRNA pseudouridine synthase A [Pectobacterium atrosepticum SCRI1043] gi|62901300|sp|Q6D2N7|TRUA_ERWCT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49612507|emb|CAG75957.1| tRNA pseudouridine synthase A [Pectobacterium atrosepticum SCRI1043] Length = 283 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 23 LKIALGIEYDGSQYYGWQRQIDVASVQACLEKALSKVADEPIEVLCAGRTDAGVHGTGQV 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +NA L I++ + V + FHARFSA R Y Y I R Sbjct: 83 VHFTTQAIRKDAAWTMGVNANL--PPDIAVRWVKAVHEDFHARFSATARRYRYIIYNHRY 140 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V Sbjct: 141 RPAVLSHGMTHFY-HPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRNVNHLKVTRH 199 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 200 GNYIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLAAKDRTLAGATARAEGLY 259 Query: 241 FDSVEY 246 +V+Y Sbjct: 260 LVAVDY 265 >gi|118594739|ref|ZP_01552086.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181] gi|118440517|gb|EAV47144.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181] Length = 264 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + YNG G+ GWQ+Q + +IQG IE A+ + + V+ H +GRTDSGVHAL Q+ Sbjct: 1 MRIACSVSYNGYGFSGWQKQPDVKTIQGLIESALTEIAKDTVITHASGRTDSGVHALGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + K +NA+L S I + + + FHAR S + R Y Y +I Sbjct: 61 IHFDTTKNRPLTAWVKGVNAFLPSS--IKVRWAKNISESFHARHSVLEREYQYLLIKDTN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ A LD N+ A + G HDF++FRS CQA SP+RTI+ F FG Sbjct: 119 NSAIFHATAGWTYFDLDDYNLMAACKCFEGTHDFSSFRSSECQAKSPVRTINQFRCEQFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + A FLH QIR+ + ++ V + + ++ L +DR P P GLY Sbjct: 179 NTYLFTIRANGFLHHQIRNMIAAVIHVAKNEDSVGFIDDLLSKKDRTLAPPTFMPNGLYL 238 Query: 242 DSVEY 246 +++Y Sbjct: 239 SNIKY 243 >gi|258627102|ref|ZP_05721898.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603] gi|258580620|gb|EEW05573.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603] Length = 264 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R I H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVEVDY 243 >gi|324324528|gb|ADY19788.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 245 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+++ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILESKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|237653725|ref|YP_002890039.1| tRNA pseudouridine synthase A [Thauera sp. MZ1T] gi|237624972|gb|ACR01662.1| tRNA pseudouridine synthase A [Thauera sp. MZ1T] Length = 265 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 128/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY G + GWQ Q +G ++Q +E+A+ + GE V H AGRTD+GVHA Q Sbjct: 1 MRRIVLGLEYAGDAFCGWQSQAHGRTVQDVLERALAQIAGEPVRTHCAGRTDTGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + +NA L + + + V FHARF A R Y Y + Sbjct: 61 VAHFDTRAVRPASAWVRGVNALLP--PAVVVRWSTEVGDDFHARFLACERQYRYILHNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ GR +LD E M AAQ LVG HDF++FR+ CQA +P+R + V Sbjct: 119 TRPAMLAGRVGWYHPALDVERMAAAAQCLVGTHDFSSFRAAGCQAKTPVRVMHEARVVRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FLH IR+ VG+L VG G++ + + L+A+DR P P+GLY Sbjct: 179 GEYLLFDFRANGFLHHMIRNLVGALVYVGKGRYPVAWMRELLEARDRARAAPTFSPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LCGVAYP 245 >gi|169797325|ref|YP_001715118.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AYE] gi|213155861|ref|YP_002317906.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB0057] gi|215484762|ref|YP_002326997.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB307-0294] gi|301346428|ref|ZP_07227169.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB056] gi|301511754|ref|ZP_07236991.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB058] gi|301594287|ref|ZP_07239295.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB059] gi|332852976|ref|ZP_08434486.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013150] gi|332866410|ref|ZP_08436994.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013113] gi|226708639|sp|B7H0S9|TRUA_ACIB3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708640|sp|B7I4E8|TRUA_ACIB5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688022|sp|B0V4L0|TRUA_ACIBY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169150252|emb|CAM88148.1| tRNA-pseudouridine synthase I [Acinetobacter baumannii AYE] gi|213055021|gb|ACJ39923.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB0057] gi|213988479|gb|ACJ58778.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB307-0294] gi|332728912|gb|EGJ60267.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013150] gi|332734636|gb|EGJ65742.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013113] Length = 265 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 135/253 (53%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + A ++ ISI + +D++FHARF A R Y Y Sbjct: 61 MVAHFDTTAIRPERGWI-------MGANSQLPKDISIQWIKQMDEEFHARFKATARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H Sbjct: 114 VVYNAPHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + ++ A+DRK G A Sbjct: 174 CRLFQHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITA 233 Query: 235 PPEGLYFDSVEYS 247 PP+GLYF Y Sbjct: 234 PPDGLYFIQCYYP 246 >gi|218548227|ref|YP_002382018.1| tRNA pseudouridine synthase A [Escherichia fergusonii ATCC 35469] gi|226708655|sp|B7LLF2|TRUA_ESCF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218355768|emb|CAQ88381.1| pseudouridylate synthase I [Escherichia fergusonii ATCC 35469] gi|324112855|gb|EGC06831.1| tRNA pseudouridine synthase A [Escherichia fergusonii B253] gi|325496642|gb|EGC94501.1| tRNA pseudouridine synthase A [Escherichia fergusonii ECD227] Length = 270 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|196040200|ref|ZP_03107502.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] gi|196029055|gb|EDX67660.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] Length = 245 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN +L + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQHL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|150015077|ref|YP_001307331.1| tRNA pseudouridine synthase A [Clostridium beijerinckii NCIMB 8052] gi|189030131|sp|A6LPU5|TRUA_CLOB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149901542|gb|ABR32375.1| tRNA pseudouridine synthase A [Clostridium beijerinckii NCIMB 8052] Length = 244 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 137/242 (56%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIE++GS + GWQRQ G +IQ IE AIF TGE ++++G+ RTD+GVHA VA+F Sbjct: 6 LIIEFDGSNFCGWQRQPKGRTIQKVIETAIFKATGEEIMINGSSRTDAGVHAREMVANF- 64 Query: 66 LVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L +P +A+N ++ + +SI+ V + FHAR+S+ ++Y Y II R L+ Sbjct: 65 LTNSSIPGDKFREAINT--RLPEDVSIIKSEEVSEDFHARYSSKGKTYSYTIINRYERLS 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L + LD MR A ++ +GRHDF F S + RTI ++ GN I Sbjct: 123 LGHQYLYHYKYRLDVNEMRRACEYFIGRHDFRAFMSPGSSIKTTTRTIHDLYIDQNGNEI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + A FL+ +R VG+L +G+GK +++ ++ +RK+ G PP GL + V Sbjct: 183 KIFITADGFLYNMVRIIVGTLIKIGNGKLEVENIKDIIEEGNRKKAGMCVPPNGLILEKV 242 Query: 245 EY 246 Y Sbjct: 243 FY 244 >gi|237732351|ref|ZP_04562832.1| tRNA pseudouridine synthase A [Citrobacter sp. 30_2] gi|226907890|gb|EEH93808.1| tRNA pseudouridine synthase A [Citrobacter sp. 30_2] Length = 270 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANERINVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLG 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V FG + + Sbjct: 134 KGVTHYY-EPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHIKVERFGAYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDY 252 >gi|262171995|ref|ZP_06039673.1| tRNA pseudouridine synthase A [Vibrio mimicus MB-451] gi|261893071|gb|EEY39057.1| tRNA pseudouridine synthase A [Vibrio mimicus MB-451] Length = 264 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLITVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVEVDY 243 >gi|91200879|emb|CAJ73934.1| strongly similar to tRNA pseudouridine synthase I [Candidatus Kuenenia stuttgartiensis] Length = 244 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 134/241 (55%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY G+ Y GWQ QKN S+Q ++ A+ V E V +HGAGRTD+GVHAL QVA+F Sbjct: 6 LTIEYEGTNYAGWQWQKNAISVQETLTHAVRTVIREEVEIHGAGRTDAGVHALGQVANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L +A+N +L I+I +++ +++ FHAR+SA + Y Y ++ +L Sbjct: 66 TYSAIPAKQLLRAINFHL--PQDITIKDVADMEEGFHARYSATSKVYRYTVLNDWLRTSL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + ++ LD M AAQ+L+G HDFT+F + IRTI + ++ G I Sbjct: 124 NRNFCYVYGFPLDLSKMMTAAQYLIGTHDFTSFTTKALDNKDRIRTIKNLEIQKEGKYIY 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 V A FL+ +R+ VG+L +G GK + K L+ +R + GP AP +GL V+ Sbjct: 184 FVVEANGFLYKMVRTIVGTLLEIGRGKMDVYLIRKLLETGNRDDAGPTAPAKGLCMKEVK 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|325578129|ref|ZP_08148264.1| tRNA pseudouridine synthase A [Haemophilus parainfluenzae ATCC 33392] gi|325159865|gb|EGC71994.1| tRNA pseudouridine synthase A [Haemophilus parainfluenzae ATCC 33392] Length = 264 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 136/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y GWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKQYCGWQRQEKVRSVQEELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ + W A + D IS+ +VD +FHARFSA R Y Y Sbjct: 61 VHFETTAVRPEKAW-------AFGTNANLPDDISVSWAKVVDDEFHARFSATARRYRY-- 111 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 L K R+ ++P+ LD + M A Q L+G +DF++FR+ CQ+++P Sbjct: 112 -----ILYCNKLRSAILPEGITHCHLDLDEKKMHQAGQFLLGENDFSSFRAAQCQSNTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + H +V G + + + A +F+H +R+ VGSL VG G ++ L+ +DRK Sbjct: 167 RNVHHLNVVRKGQYVIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A PEGLY +V Y Sbjct: 227 AAPTAKPEGLYLVNVIY 243 >gi|229028278|ref|ZP_04184414.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271] gi|228733042|gb|EEL83888.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271] Length = 250 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + IS+ ++ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISVTDVEEVPDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPYILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|307131844|ref|YP_003883860.1| tRNA pseudouridine synthase A [Dickeya dadantii 3937] gi|306529373|gb|ADM99303.1| tRNA pseudouridine synthase A [Dickeya dadantii 3937] Length = 276 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 136/247 (55%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+QG +E A+ V E + V AGRTD+GVHA QV Sbjct: 13 LKIALGIEYDGSRYYGWQRQAEVDSVQGCLEAALSQVANERIDVFCAGRTDAGVHATGQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 HF +NA L I++ + VD FHARFSA R Y Y I R+ Sbjct: 73 VHFTTRAARKDAAWTMGVNANLPPD--IAVRWVKTVDDAFHARFSATARRYRYVIYNRRF 130 Query: 121 APLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L +G + +P LD E M A Q L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 131 RPAILSRGVTHYYLP--LDAERMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVAR 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + + A +F+H +R+ VGSL +G G + + + L A+DR A +GL Sbjct: 189 QGDYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQSENWMAELLAAKDRTLAAATAKADGL 248 Query: 240 YFDSVEY 246 Y SV+Y Sbjct: 249 YLVSVDY 255 >gi|183599662|ref|ZP_02961155.1| hypothetical protein PROSTU_03151 [Providencia stuartii ATCC 25827] gi|188021916|gb|EDU59956.1| hypothetical protein PROSTU_03151 [Providencia stuartii ATCC 25827] Length = 271 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 97/248 (39%), Positives = 137/248 (55%), Gaps = 10/248 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS Y+GWQRQ+ S+QG +E A+ V + V AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYYGWQRQQEVKSVQGCLEDALSKVANHPINVFCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT- 118 HFD PVI +A + + + I++ VD++FHARFSA R Y Y I Sbjct: 69 HFD-----TPVIRKEAAWTMGVNTHLPEDIAVRWCKPVDEEFHARFSATARRYRYVIFNH 123 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R P L G LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 124 RYRPAILSSGVTHF-HYPLDEKKMHEAAQALLGENDFTSFRAVQCQSRTPWRNVMHVQVT 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN + + + A +F+H +R+ VGSL +G G + + L+ +DR + A +G Sbjct: 183 RHGNYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDINWMAQLLELKDRTKAAATAKADG 242 Query: 239 LYFDSVEY 246 LY SV+Y Sbjct: 243 LYLVSVDY 250 >gi|15802865|ref|NP_288892.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 EDL933] gi|15832456|ref|NP_311229.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. Sakai] gi|26248707|ref|NP_754747.1| tRNA pseudouridine synthase A [Escherichia coli CFT073] gi|82777729|ref|YP_404078.1| tRNA pseudouridine synthase A [Shigella dysenteriae Sd197] gi|168748172|ref|ZP_02773194.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4113] gi|168755075|ref|ZP_02780082.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4401] gi|168761239|ref|ZP_02786246.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4501] gi|168767949|ref|ZP_02792956.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4486] gi|168772951|ref|ZP_02797958.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4196] gi|168780178|ref|ZP_02805185.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4076] gi|168787230|ref|ZP_02812237.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869] gi|168798493|ref|ZP_02823500.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508] gi|170680088|ref|YP_001744518.1| tRNA pseudouridine synthase A [Escherichia coli SMS-3-5] gi|195935697|ref|ZP_03081079.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4024] gi|208807895|ref|ZP_03250232.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4206] gi|208811862|ref|ZP_03253191.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4045] gi|208821544|ref|ZP_03261864.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4042] gi|209397276|ref|YP_002271727.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4115] gi|217327172|ref|ZP_03443255.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14588] gi|218695917|ref|YP_002403584.1| tRNA pseudouridine synthase A [Escherichia coli 55989] gi|218700794|ref|YP_002408423.1| tRNA pseudouridine synthase A [Escherichia coli IAI39] gi|218705848|ref|YP_002413367.1| tRNA pseudouridine synthase A [Escherichia coli UMN026] gi|227887378|ref|ZP_04005183.1| tRNA pseudouridine synthase A [Escherichia coli 83972] gi|254794211|ref|YP_003079048.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14359] gi|261223227|ref|ZP_05937508.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. FRIK2000] gi|261259223|ref|ZP_05951756.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. FRIK966] gi|291283559|ref|YP_003500377.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615] gi|293405784|ref|ZP_06649776.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1412] gi|293410675|ref|ZP_06654251.1| tRNA pseudouridine synthase A [Escherichia coli B354] gi|293415611|ref|ZP_06658254.1| tRNA pseudouridine synthase A [Escherichia coli B185] gi|293446655|ref|ZP_06663077.1| tRNA pseudouridine synthase A [Escherichia coli B088] gi|298381467|ref|ZP_06991066.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1302] gi|300822193|ref|ZP_07102335.1| tRNA pseudouridine synthase A [Escherichia coli MS 119-7] gi|300936897|ref|ZP_07151784.1| tRNA pseudouridine synthase A [Escherichia coli MS 21-1] gi|300983542|ref|ZP_07176636.1| tRNA pseudouridine synthase A [Escherichia coli MS 45-1] gi|301024150|ref|ZP_07187860.1| tRNA pseudouridine synthase A [Escherichia coli MS 69-1] gi|301049077|ref|ZP_07196061.1| tRNA pseudouridine synthase A [Escherichia coli MS 185-1] gi|301303220|ref|ZP_07209345.1| tRNA pseudouridine synthase A [Escherichia coli MS 124-1] gi|307311121|ref|ZP_07590765.1| tRNA pseudouridine synthase A [Escherichia coli W] gi|309784972|ref|ZP_07679605.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1617] gi|309793201|ref|ZP_07687629.1| tRNA pseudouridine synthase A [Escherichia coli MS 145-7] gi|331663835|ref|ZP_08364745.1| tRNA pseudouridine synthase A [Escherichia coli TA143] gi|331669017|ref|ZP_08369865.1| tRNA pseudouridine synthase A [Escherichia coli TA271] gi|331673820|ref|ZP_08374583.1| tRNA pseudouridine synthase A [Escherichia coli TA280] gi|331678264|ref|ZP_08378939.1| tRNA pseudouridine synthase A [Escherichia coli H591] gi|54039780|sp|P65845|TRUA_ECO57 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042085|sp|P65844|TRUA_ECOL6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123755724|sp|Q32DL8|TRUA_SHIDS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708651|sp|B7NNZ9|TRUA_ECO7I RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708653|sp|B7N5T0|TRUA_ECOLU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708654|sp|B1LLS3|TRUA_ECOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057729|sp|B5YXV8|TRUA_ECO5E RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789635|sp|B7LBH2|TRUA_ECO55 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12516677|gb|AAG57447.1|AE005463_10 pseudouridylate synthase I [Escherichia coli O157:H7 str. EDL933] gi|26109112|gb|AAN81315.1|AE016763_274 tRNA pseudouridine synthase A [Escherichia coli CFT073] gi|13362672|dbj|BAB36625.1| pseudouridylate synthase I [Escherichia coli O157:H7 str. Sakai] gi|81241877|gb|ABB62587.1| pseudouridylate synthase I [Shigella dysenteriae Sd197] gi|170517806|gb|ACB15984.1| tRNA pseudouridine synthase A [Escherichia coli SMS-3-5] gi|187771144|gb|EDU34988.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4196] gi|188017261|gb|EDU55383.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4113] gi|189001906|gb|EDU70892.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4076] gi|189357607|gb|EDU76026.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4401] gi|189362830|gb|EDU81249.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4486] gi|189368293|gb|EDU86709.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4501] gi|189372810|gb|EDU91226.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869] gi|189378874|gb|EDU97290.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508] gi|208727696|gb|EDZ77297.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4206] gi|208733139|gb|EDZ81826.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4045] gi|208741667|gb|EDZ89349.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4042] gi|209158676|gb|ACI36109.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4115] gi|209764788|gb|ACI80706.1| pseudouridylate synthase I [Escherichia coli] gi|209764790|gb|ACI80707.1| pseudouridylate synthase I [Escherichia coli] gi|209764792|gb|ACI80708.1| pseudouridylate synthase I [Escherichia coli] gi|209764796|gb|ACI80710.1| pseudouridylate synthase I [Escherichia coli] gi|217319539|gb|EEC27964.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14588] gi|218352649|emb|CAU98430.1| pseudouridylate synthase I [Escherichia coli 55989] gi|218370780|emb|CAR18593.1| pseudouridylate synthase I [Escherichia coli IAI39] gi|218432945|emb|CAR13839.1| pseudouridylate synthase I [Escherichia coli UMN026] gi|222034074|emb|CAP76815.1| tRNA pseudouridine synthase A [Escherichia coli LF82] gi|227835728|gb|EEJ46194.1| tRNA pseudouridine synthase A [Escherichia coli 83972] gi|254593611|gb|ACT72972.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14359] gi|284922306|emb|CBG35391.1| tRNA pseudouridine synthase A [Escherichia coli 042] gi|290763432|gb|ADD57393.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615] gi|291323485|gb|EFE62913.1| tRNA pseudouridine synthase A [Escherichia coli B088] gi|291427992|gb|EFF01019.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1412] gi|291433259|gb|EFF06238.1| tRNA pseudouridine synthase A [Escherichia coli B185] gi|291471143|gb|EFF13627.1| tRNA pseudouridine synthase A [Escherichia coli B354] gi|298278909|gb|EFI20423.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1302] gi|300299124|gb|EFJ55509.1| tRNA pseudouridine synthase A [Escherichia coli MS 185-1] gi|300396694|gb|EFJ80232.1| tRNA pseudouridine synthase A [Escherichia coli MS 69-1] gi|300408504|gb|EFJ92042.1| tRNA pseudouridine synthase A [Escherichia coli MS 45-1] gi|300458008|gb|EFK21501.1| tRNA pseudouridine synthase A [Escherichia coli MS 21-1] gi|300525323|gb|EFK46392.1| tRNA pseudouridine synthase A [Escherichia coli MS 119-7] gi|300841394|gb|EFK69154.1| tRNA pseudouridine synthase A [Escherichia coli MS 124-1] gi|306908627|gb|EFN39124.1| tRNA pseudouridine synthase A [Escherichia coli W] gi|307554380|gb|ADN47155.1| tRNA pseudouridine synthase A [Escherichia coli ABU 83972] gi|308123487|gb|EFO60749.1| tRNA pseudouridine synthase A [Escherichia coli MS 145-7] gi|308927342|gb|EFP72816.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1617] gi|312946937|gb|ADR27764.1| tRNA pseudouridine synthase A [Escherichia coli O83:H1 str. NRG 857C] gi|315061611|gb|ADT75938.1| pseudouridylate synthase I [Escherichia coli W] gi|315255255|gb|EFU35223.1| tRNA pseudouridine synthase A [Escherichia coli MS 85-1] gi|315292275|gb|EFU51627.1| tRNA pseudouridine synthase A [Escherichia coli MS 153-1] gi|320192058|gb|EFW66703.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC1212] gi|320641146|gb|EFX10625.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. G5101] gi|320646361|gb|EFX15284.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str. 493-89] gi|320651631|gb|EFX20011.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str. H 2687] gi|320657383|gb|EFX25185.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662918|gb|EFX30242.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. USDA 5905] gi|320667662|gb|EFX34573.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. LSU-61] gi|323184362|gb|EFZ69738.1| tRNA pseudouridine synthase A [Escherichia coli 1357] gi|323377808|gb|ADX50076.1| tRNA pseudouridine synthase A [Escherichia coli KO11] gi|323944831|gb|EGB40897.1| tRNA pseudouridine synthase A [Escherichia coli H120] gi|326339671|gb|EGD63482.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1125] gi|326344133|gb|EGD67894.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1044] gi|331059634|gb|EGI31611.1| tRNA pseudouridine synthase A [Escherichia coli TA143] gi|331064211|gb|EGI36122.1| tRNA pseudouridine synthase A [Escherichia coli TA271] gi|331069093|gb|EGI40485.1| tRNA pseudouridine synthase A [Escherichia coli TA280] gi|331074724|gb|EGI46044.1| tRNA pseudouridine synthase A [Escherichia coli H591] Length = 270 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|24113690|ref|NP_708200.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 301] gi|30063744|ref|NP_837915.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T] gi|110806283|ref|YP_689803.1| tRNA pseudouridine synthase A [Shigella flexneri 5 str. 8401] gi|187733598|ref|YP_001881140.1| tRNA pseudouridine synthase A [Shigella boydii CDC 3083-94] gi|191168731|ref|ZP_03030509.1| tRNA pseudouridine synthase A [Escherichia coli B7A] gi|193062289|ref|ZP_03043384.1| tRNA pseudouridine synthase A [Escherichia coli E22] gi|194432876|ref|ZP_03065160.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1012] gi|209919818|ref|YP_002293902.1| tRNA pseudouridine synthase A [Escherichia coli SE11] gi|218554873|ref|YP_002387786.1| tRNA pseudouridine synthase A [Escherichia coli IAI1] gi|256017524|ref|ZP_05431389.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|260844905|ref|YP_003222683.1| pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009] gi|300818078|ref|ZP_07098290.1| tRNA pseudouridine synthase A [Escherichia coli MS 107-1] gi|300918510|ref|ZP_07135103.1| tRNA pseudouridine synthase A [Escherichia coli MS 115-1] gi|300924588|ref|ZP_07140550.1| tRNA pseudouridine synthase A [Escherichia coli MS 182-1] gi|301328823|ref|ZP_07221865.1| tRNA pseudouridine synthase A [Escherichia coli MS 78-1] gi|331653762|ref|ZP_08354763.1| tRNA pseudouridine synthase A [Escherichia coli M718] gi|332278531|ref|ZP_08390944.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|42559800|sp|Q83QR3|TRUA_SHIFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122957319|sp|Q0T2G7|TRUA_SHIF8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708652|sp|B7M6J9|TRUA_ECO8A RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057730|sp|B6I4U6|TRUA_ECOSE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691701|sp|B2TWA0|TRUA_SHIB3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24052758|gb|AAN43907.1| pseudouridylate synthase I [Shigella flexneri 2a str. 301] gi|30041999|gb|AAP17725.1| pseudouridylate synthase I [Shigella flexneri 2a str. 2457T] gi|110615831|gb|ABF04498.1| pseudouridylate synthase I [Shigella flexneri 5 str. 8401] gi|187430590|gb|ACD09864.1| tRNA pseudouridine synthase A [Shigella boydii CDC 3083-94] gi|190901221|gb|EDV60992.1| tRNA pseudouridine synthase A [Escherichia coli B7A] gi|192931955|gb|EDV84554.1| tRNA pseudouridine synthase A [Escherichia coli E22] gi|194418864|gb|EDX34949.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1012] gi|209913077|dbj|BAG78151.1| tRNA pseudouridine synthase A [Escherichia coli SE11] gi|218361641|emb|CAQ99237.1| pseudouridylate synthase I [Escherichia coli IAI1] gi|257760052|dbj|BAI31549.1| pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009] gi|281601759|gb|ADA74743.1| tRNA pseudouridine synthase A [Shigella flexneri 2002017] gi|300414324|gb|EFJ97634.1| tRNA pseudouridine synthase A [Escherichia coli MS 115-1] gi|300419219|gb|EFK02530.1| tRNA pseudouridine synthase A [Escherichia coli MS 182-1] gi|300529222|gb|EFK50284.1| tRNA pseudouridine synthase A [Escherichia coli MS 107-1] gi|300844772|gb|EFK72532.1| tRNA pseudouridine synthase A [Escherichia coli MS 78-1] gi|313651142|gb|EFS15541.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T] gi|320178707|gb|EFW53670.1| tRNA pseudouridine synthase A [Shigella boydii ATCC 9905] gi|320199909|gb|EFW74498.1| tRNA pseudouridine synthase A [Escherichia coli EC4100B] gi|323172001|gb|EFZ57645.1| tRNA pseudouridine synthase A [Escherichia coli LT-68] gi|324020840|gb|EGB90059.1| tRNA pseudouridine synthase A [Escherichia coli MS 117-3] gi|324117804|gb|EGC11703.1| tRNA pseudouridine synthase A [Escherichia coli E1167] gi|331048611|gb|EGI20687.1| tRNA pseudouridine synthase A [Escherichia coli M718] gi|332088449|gb|EGI93567.1| tRNA pseudouridine synthase A [Shigella boydii 5216-82] gi|332090156|gb|EGI95255.1| tRNA pseudouridine synthase A [Shigella dysenteriae 155-74] gi|332100883|gb|EGJ04229.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|332754968|gb|EGJ85333.1| tRNA pseudouridine synthase A [Shigella flexneri 4343-70] gi|332755368|gb|EGJ85732.1| tRNA pseudouridine synthase A [Shigella flexneri K-671] gi|332756607|gb|EGJ86958.1| tRNA pseudouridine synthase A [Shigella flexneri 2747-71] gi|332766138|gb|EGJ96348.1| tRNA pseudouridine synthase A [Shigella flexneri 2930-71] gi|333001463|gb|EGK21031.1| tRNA pseudouridine synthase A [Shigella flexneri VA-6] gi|333001944|gb|EGK21510.1| tRNA pseudouridine synthase A [Shigella flexneri K-218] gi|333002687|gb|EGK22247.1| tRNA pseudouridine synthase A [Shigella flexneri K-272] gi|333016355|gb|EGK35686.1| tRNA pseudouridine synthase A [Shigella flexneri K-304] gi|333016571|gb|EGK35901.1| tRNA pseudouridine synthase A [Shigella flexneri K-227] Length = 270 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|325127315|gb|EGC50250.1| tRNA pseudouridine synthase A [Neisseria meningitidis N1568] Length = 265 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAVRPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSS 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|300897000|ref|ZP_07115479.1| tRNA pseudouridine synthase A [Escherichia coli MS 198-1] gi|300359181|gb|EFJ75051.1| tRNA pseudouridine synthase A [Escherichia coli MS 198-1] Length = 270 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|260769069|ref|ZP_05878003.1| tRNA pseudouridine synthase A [Vibrio furnissii CIP 102972] gi|260617099|gb|EEX42284.1| tRNA pseudouridine synthase A [Vibrio furnissii CIP 102972] gi|315180810|gb|ADT87724.1| tRNA pseudouridine synthase A [Vibrio furnissii NCTC 11218] Length = 264 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ +S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTQYYGWQRQREVNSVQEELEKALSVIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 HFD ++ + A + I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTA--TRKMIAWTMGANANLPKNIAVRWAKEVPDEFHARFSATARRYRYVIYNHMF 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD M A Q L+G +DFT+FR++HCQ+ SP R I H +V Sbjct: 119 RPGILATGVS-HYHGELDVARMHQAGQFLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 178 ERYVVIDIKANAFVHHMVRNITGSLIAVGRGEQEPEWIQWLLEAKDRKLAGATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|323967759|gb|EGB63171.1| tRNA pseudouridine synthase A [Escherichia coli M863] gi|327252589|gb|EGE64248.1| tRNA pseudouridine synthase A [Escherichia coli STEC_7v] Length = 270 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|209764794|gb|ACI80709.1| pseudouridylate synthase I [Escherichia coli] Length = 270 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNYRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|85059597|ref|YP_455299.1| tRNA pseudouridine synthase A [Sodalis glossinidius str. 'morsitans'] gi|84780117|dbj|BAE74894.1| pseudouridylate synthase I [Sodalis glossinidius str. 'morsitans'] Length = 271 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ +S+Q +E+A+ V E V V+ AGRTD+GVHA QV Sbjct: 10 MKLALGIEYDGSAYYGWQRQQEVASVQACLERALSTVADETVTVYCAGRTDAGVHATGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L I++ ++ V FHARFSA R Y Y I Sbjct: 70 VHFDTRSRRPDTAWTLGVNANLPAD--IAVRWVAPVTDDFHARFSATARRYRYIIYNHPL 127 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD +M A Q L+G +DFT+FR++ CQ+ SP R + H V Sbjct: 128 RPALLGRGLTHYY-HPLDAPSMARAGQCLLGENDFTSFRALQCQSRSPWRNVHHLYVTRQ 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A +F+H +R+ VGSL VG G + + L +DR + G A EGLY Sbjct: 187 GRYVVVDIKANAFVHHMVRNIVGSLLEVGCGNRPESWIADLLACRDRTQAGATARAEGLY 246 Query: 241 FDSVEY 246 +V+Y Sbjct: 247 LVAVDY 252 >gi|88860431|ref|ZP_01135069.1| tRNA pseudouridine synthase A [Pseudoalteromonas tunicata D2] gi|88817629|gb|EAR27446.1| tRNA pseudouridine synthase A [Pseudoalteromonas tunicata D2] Length = 262 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 140/247 (56%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ N S+Q +E+A+ + V V AGRTDSGVH QV Sbjct: 1 MRIALGIEYDGSNYFGWQRQNNVISVQQEVEQALSRICNHPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N+ L D +++ V FHARFSA R Y Y I+ + Sbjct: 61 VHFDTDANRDISAFYLGMNSVLP--DAVAVRWAQEVSLDFHARFSATARRYRYVILNQNN 118 Query: 122 -PLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L+ G + + +P LD + M A +L+G +DFT+FR++HCQ+++P R I H V+ Sbjct: 119 RPGILKNGISHYHLP--LDADAMNQACSYLLGENDFTSFRAVHCQSNTPFRNIMHLRVDR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG+ + I + A +FLH +R+ G L +G GK+ ++ ++ L+ +DR + A GL Sbjct: 177 FGDYVVIDIKANAFLHHMVRNITGCLIDIGIGKYPASWMKDVLELKDRTKASATAKAAGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YLVDVDY 243 >gi|121728128|ref|ZP_01681164.1| tRNA pseudouridine synthase A [Vibrio cholerae V52] gi|229512439|ref|ZP_04401912.1| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21] gi|121629596|gb|EAX62018.1| tRNA pseudouridine synthase A [Vibrio cholerae V52] gi|229350520|gb|EEO15467.1| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21] Length = 264 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 132/246 (53%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 178 SRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 SV+Y Sbjct: 238 LVSVDY 243 >gi|291548427|emb|CBL21535.1| pseudouridylate synthase I [Ruminococcus sp. SR1/5] Length = 245 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + + + GE + GA RTD+GVHAL Sbjct: 1 MKRVGLVVAYDGTKYSGWQTQPNGITIQGVLNDTLSELLGEKIETIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN ++ + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTESRIPGEKFSYALNQ--RLPEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD + M+ A +L+GRHDF +F Q + IRT+ DV Sbjct: 119 FPVPTERLYSYFYHYKLDVDKMKEATSYLIGRHDFASFCGSGAQVKTTIRTVTSMDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IR+ FL+ +R G+L +G+G++ ++K L+A DR GP AP +GL Sbjct: 179 GDMVTIRISGTGFLYNMVRIISGTLIEIGNGQYPPERMDKILKACDRGAAGPTAPAQGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|328958698|ref|YP_004376084.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] gi|328675022|gb|AEB31068.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] Length = 279 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 143/249 (57%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 IRY +I++Y+G+ + G+Q Q + ++QG I+KA+ ++T I V++HG+GRTDSGVHA Q Sbjct: 4 IRYKLIVQYDGTHFAGFQIQPHDRTVQGEIQKALKIMTKGIEVIIHGSGRTDSGVHAKGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +ALN+ SD I + ++SIV+ +FHAR++ + Y YR+ + Sbjct: 64 VIHFDYPFVIPAKNMKRALNSL--TSDEIFVKDVSIVEDEFHARYNTSGKKYQYRVDLNE 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 P ++ P LD + ++ A + L G HDF +F + H + +RT+ V + Sbjct: 122 IPDPFKRLYTLHHPYPLDMDKLKNALKDLEGEHDFASFCASHSGRENKVRTVYEASVVKD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 F N + FL+ +R FVG+L + +G + ++++ L+ +DR E GP A P+G Sbjct: 182 DFNNELLFTFRGNGFLYNMVRIFVGTLLQIANGLRPADEIQRLLEVKDRNEAGPTAKPQG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLMEVYYK 250 >gi|193068139|ref|ZP_03049103.1| tRNA pseudouridine synthase A [Escherichia coli E110019] gi|192958418|gb|EDV88857.1| tRNA pseudouridine synthase A [Escherichia coli E110019] Length = 270 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPDSWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|292492023|ref|YP_003527462.1| tRNA pseudouridine synthase A [Nitrosococcus halophilus Nc4] gi|291580618|gb|ADE15075.1| tRNA pseudouridine synthase A [Nitrosococcus halophilus Nc4] Length = 259 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 130/250 (52%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +EY GS + GWQ Q+ ++Q ++E+A+ V + + V AGRTD+GVHA QV Sbjct: 1 MRIAFGVEYEGSSFCGWQSQRGVPTVQATLEEAVSKVANQPITVITAGRTDAGVHAAAQV 60 Query: 62 AHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD L W+ + + + +L VD+ FHARFSA+ R Y Y I Sbjct: 61 VHFDTTASRLEHNWI-------FGCNMNLPPEVVVLWAQPVDETFHARFSAVARHYRYVI 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + R+ A+ R L MR HL+G HDF++FR+ CQA SPIR + + Sbjct: 114 LNRRVRPAIANRRVTWYCHPLSVSRMREGGAHLIGEHDFSSFRAKACQAKSPIRNVHRLE 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V + + I + A +FLH +R+ G L VG G+ +E+ LQA+ R A P Sbjct: 174 VRRQEDFVVIDISANAFLHHMVRNIAGVLMAVGKGEQPPCWVEEVLQARCRALGSVTARP 233 Query: 237 EGLYFDSVEY 246 +GLY V+Y Sbjct: 234 DGLYLMGVDY 243 >gi|261211961|ref|ZP_05926247.1| tRNA pseudouridine synthase A [Vibrio sp. RC341] gi|260838569|gb|EEX65220.1| tRNA pseudouridine synthase A [Vibrio sp. RC341] Length = 264 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L I++ S V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWASSVPDDFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVSHYHCE-LDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVEVDY 243 >gi|229591618|ref|YP_002873737.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens SBW25] gi|229363484|emb|CAY50706.1| pseudouridylate synthase I [Pseudomonas fluorescens SBW25] Length = 284 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 136/251 (54%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++EKA+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQAERSMKAWV-------MGANINLPHDVSVSWAKVMPAHFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AAQHLVG HDF+ FR+ CQA SPI+ + H Sbjct: 131 YNDQIRPAHLNEEITW-NHRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I + + A +FLH +R+ G L +G G+ ++ L+++ R+ G A Sbjct: 190 RVTRHGKMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVAWAKEVLESRVRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PFGLYLVDVEY 260 >gi|312796827|ref|YP_004029749.1| tRNA pseudouridine synthase A [Burkholderia rhizoxinica HKI 454] gi|312168602|emb|CBW75605.1| tRNA pseudouridine synthase A (EC 4.2.1.70) [Burkholderia rhizoxinica HKI 454] Length = 271 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + ++Y+G+ + GWQ Q +G+++Q +E+A+ + AGRTD+GVHAL QV Sbjct: 6 MRIALGLQYDGAAFCGWQAQPHGNTVQNVLERALEQFAQVPLPTVVAGRTDTGVHALGQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + + +NA+L S +S+ V FHARF+A R+Y Y + Sbjct: 66 VHFDTLLDRAAFSWVRGVNAFLPPS--VSVQWAKPVPPTFHARFAAFERTYFYVLYVHPV 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD E MR AA +L+G HDF++FRS CQA +P++ + D+ G Sbjct: 124 RSPMLARRAGWVHTPLDVEAMREAAGYLIGEHDFSSFRSSDCQAKTPVKHLYAIDIVEHG 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + +R A +FLH +R+ +G L VG + + + + L A++RK P P+GLY Sbjct: 184 PFVHLRFRANAFLHHMVRNIMGCLVSVGRHRHPACWMAEVLAARERKHAAPTFMPDGLYL 243 Query: 242 DSVEYS 247 V Y Sbjct: 244 AQVGYP 249 >gi|145299467|ref|YP_001142308.1| tRNA pseudouridine synthase A [Aeromonas salmonicida subsp. salmonicida A449] gi|166228677|sp|A4SNT8|TRUA_AERS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|142852239|gb|ABO90560.1| tRNA pseudouridine synthase A [Aeromonas salmonicida subsp. salmonicida A449] Length = 269 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +EKA+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQAELEKALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTHAIRSESAWTLGLNSNLP--PDIAVRWVKEVDETFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +++D M +A Q L+G DFT+FR+I CQ+ +P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETIDAALMHLAGQCLLGEQDFTSFRAIGCQSKTPWRNVTHLCVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR + GP A GLY Sbjct: 179 PYIVLDIRANAFLHHMVRNITGSLLLVGQGLKPVEWIAELLAAKDRNQAGPTAKAGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|262402660|ref|ZP_06079221.1| tRNA pseudouridine synthase A [Vibrio sp. RC586] gi|262351442|gb|EEZ00575.1| tRNA pseudouridine synthase A [Vibrio sp. RC586] Length = 264 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L I++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 178 GRYVVIDLKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVDVDY 243 >gi|240000017|ref|ZP_04719941.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] gi|268595826|ref|ZP_06129993.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] gi|268549215|gb|EEZ44633.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] Length = 265 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDITAARPQQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|212712250|ref|ZP_03320378.1| hypothetical protein PROVALCAL_03336 [Providencia alcalifaciens DSM 30120] gi|212684996|gb|EEB44524.1| hypothetical protein PROVALCAL_03336 [Providencia alcalifaciens DSM 30120] Length = 271 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 135/246 (54%), Gaps = 6/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS Y+GWQRQ+ S+QG +E A+ + E + V+ AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYYGWQRQQEVQSVQGCLEAALSKIAAEPISVNCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQA 121 HF+ N +L D I++ VD +FHARFSA R Y Y I R Sbjct: 69 HFETSAIRKEAAWTMGTNTHL--PDDIAVRWCKPVDDEFHARFSATARRYRYVIFNHRYR 126 Query: 122 PLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + P LD + M AAQ L+G DFT+FR++ CQ+ +P R + H +V Sbjct: 127 PAILSNGVTHFHFP--LDEKRMHQAAQALLGERDFTSFRAVQCQSKTPWRNVMHVNVTRH 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + + + A +F+H +R+ VGSL +G G + L+ +DR + A EGLY Sbjct: 185 GNYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMAHLLELKDRTKAAATAKAEGLY 244 Query: 241 FDSVEY 246 SV+Y Sbjct: 245 LVSVDY 250 >gi|121635695|ref|YP_975940.1| tRNA pseudouridine synthase A [Neisseria meningitidis FAM18] gi|166228740|sp|A1KWB6|TRUA_NEIMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120867401|emb|CAM11173.1| tRNA pseudouridine synthase [Neisseria meningitidis FAM18] gi|325143594|gb|EGC65914.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240013] Length = 265 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESVPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIGPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSS 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|259047524|ref|ZP_05737925.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175] gi|259035715|gb|EEW36970.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175] Length = 249 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY + I+Y+G+ Y G+Q Q+NG+SIQ + KA+ +T G+ + V G+GRTDSGVHA Sbjct: 1 MQRYKLTIQYDGTPYVGFQVQENGNSIQAELNKALKKMTKGQYIPVSGSGRTDSGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV H D + L +A+N+ L S I I++ V ++FHAR+S + Y+Y++ T Sbjct: 61 QVVHIDYPKRIEANSLVRAMNSLLPTS--IRIVSAEAVSEEFHARYSVTGKRYIYKVTTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + P D + + A + ++G HDFT+F S S +R + +V Sbjct: 119 QVQSPFLRQYELHHPFKTDVDRINKAFEAVIGEHDFTSFCSTKSDKDSKVRVVTKAEVKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL+ +R VG+ +GDG ++++ L+A DR GP AP GL Sbjct: 179 NGDELIFTFEGKGFLYNMVRILVGTALQIGDGLREVEEMKQILEAMDRNAAGPTAPSHGL 238 Query: 240 YFDSVEY 246 Y D V Y Sbjct: 239 YLDEVFY 245 >gi|91211615|ref|YP_541601.1| tRNA pseudouridine synthase A [Escherichia coli UTI89] gi|110642522|ref|YP_670252.1| tRNA pseudouridine synthase A [Escherichia coli 536] gi|117624508|ref|YP_853421.1| tRNA pseudouridine synthase A [Escherichia coli APEC O1] gi|157155365|ref|YP_001463662.1| tRNA pseudouridine synthase A [Escherichia coli E24377A] gi|191170294|ref|ZP_03031848.1| tRNA pseudouridine synthase A [Escherichia coli F11] gi|215487531|ref|YP_002329962.1| tRNA pseudouridine synthase A [Escherichia coli O127:H6 str. E2348/69] gi|218559231|ref|YP_002392144.1| tRNA pseudouridine synthase A [Escherichia coli S88] gi|218690478|ref|YP_002398690.1| tRNA pseudouridine synthase A [Escherichia coli ED1a] gi|237704797|ref|ZP_04535278.1| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA] gi|300928489|ref|ZP_07144015.1| tRNA pseudouridine synthase A [Escherichia coli MS 187-1] gi|300986858|ref|ZP_07177840.1| tRNA pseudouridine synthase A [Escherichia coli MS 200-1] gi|306814570|ref|ZP_07448732.1| tRNA pseudouridine synthase A [Escherichia coli NC101] gi|312967618|ref|ZP_07781833.1| tRNA pseudouridine synthase A [Escherichia coli 2362-75] gi|331647974|ref|ZP_08349066.1| tRNA pseudouridine synthase A [Escherichia coli M605] gi|331658401|ref|ZP_08359363.1| tRNA pseudouridine synthase A [Escherichia coli TA206] gi|331683990|ref|ZP_08384586.1| tRNA pseudouridine synthase A [Escherichia coli H299] gi|123049014|sp|Q0TFC8|TRUA_ECOL5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123084414|sp|Q1R994|TRUA_ECOUT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228696|sp|A1ADG7|TRUA_ECOK1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166991161|sp|A7ZPD3|TRUA_ECO24 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708650|sp|B7MG82|TRUA_ECO45 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789634|sp|B7UFX6|TRUA_ECO27 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789636|sp|B7MXZ5|TRUA_ECO81 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91073189|gb|ABE08070.1| tRNA pseudouridylate synthase I [Escherichia coli UTI89] gi|110344114|gb|ABG70351.1| tRNA pseudouridine synthase A [Escherichia coli 536] gi|115513632|gb|ABJ01707.1| tRNA pseudouridine synthase A [Escherichia coli APEC O1] gi|157077395|gb|ABV17103.1| tRNA pseudouridine synthase A [Escherichia coli E24377A] gi|190909810|gb|EDV69395.1| tRNA pseudouridine synthase A [Escherichia coli F11] gi|215265603|emb|CAS10006.1| pseudouridylate synthase I [Escherichia coli O127:H6 str. E2348/69] gi|218366000|emb|CAR03744.1| pseudouridylate synthase I [Escherichia coli S88] gi|218428042|emb|CAR08961.2| pseudouridylate synthase I [Escherichia coli ED1a] gi|226901163|gb|EEH87422.1| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA] gi|281179405|dbj|BAI55735.1| tRNA pseudouridine synthase A [Escherichia coli SE15] gi|294491901|gb|ADE90657.1| tRNA pseudouridine synthase A [Escherichia coli IHE3034] gi|300306347|gb|EFJ60867.1| tRNA pseudouridine synthase A [Escherichia coli MS 200-1] gi|300463484|gb|EFK26977.1| tRNA pseudouridine synthase A [Escherichia coli MS 187-1] gi|305851964|gb|EFM52416.1| tRNA pseudouridine synthase A [Escherichia coli NC101] gi|307626145|gb|ADN70449.1| tRNA pseudouridine synthase A [Escherichia coli UM146] gi|312287815|gb|EFR15720.1| tRNA pseudouridine synthase A [Escherichia coli 2362-75] gi|315288292|gb|EFU47691.1| tRNA pseudouridine synthase A [Escherichia coli MS 110-3] gi|315298147|gb|EFU57411.1| tRNA pseudouridine synthase A [Escherichia coli MS 16-3] gi|320196186|gb|EFW70810.1| tRNA pseudouridine synthase A [Escherichia coli WV_060327] gi|323187957|gb|EFZ73252.1| tRNA pseudouridine synthase A [Escherichia coli RN587/1] gi|323952111|gb|EGB47985.1| tRNA pseudouridine synthase A [Escherichia coli H252] gi|323955889|gb|EGB51643.1| tRNA pseudouridine synthase A [Escherichia coli H263] gi|324009238|gb|EGB78457.1| tRNA pseudouridine synthase A [Escherichia coli MS 57-2] gi|331043698|gb|EGI15836.1| tRNA pseudouridine synthase A [Escherichia coli M605] gi|331056649|gb|EGI28658.1| tRNA pseudouridine synthase A [Escherichia coli TA206] gi|331078942|gb|EGI50144.1| tRNA pseudouridine synthase A [Escherichia coli H299] Length = 270 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|169634476|ref|YP_001708212.1| tRNA pseudouridine synthase A [Acinetobacter baumannii SDF] gi|260556213|ref|ZP_05828432.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 19606] gi|238688125|sp|B0VLA5|TRUA_ACIBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169153268|emb|CAP02373.1| tRNA-pseudouridine synthase I [Acinetobacter baumannii] gi|260410268|gb|EEX03567.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 19606] Length = 265 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 135/253 (53%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + A ++ ISI + +D++FHARF A R Y Y Sbjct: 61 MVAHFDTNAIRPERGWI-------MGANSQLPKDISIQWIKQMDEEFHARFKATARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H Sbjct: 114 VVYNAPHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + ++ A+DRK G A Sbjct: 174 CRLFEHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITA 233 Query: 235 PPEGLYFDSVEYS 247 PP+GLYF Y Sbjct: 234 PPDGLYFIQCYYP 246 >gi|239500845|ref|ZP_04660155.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB900] Length = 265 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 135/253 (53%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + A ++ ISI + +D++FHARF A R Y Y Sbjct: 61 MVAHFDTNAIRQERGWI-------MGANSQLPKDISIQWIKQMDEEFHARFKATARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H Sbjct: 114 VVYNAPHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + ++ A+DRK G A Sbjct: 174 CRLFEHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITA 233 Query: 235 PPEGLYFDSVEYS 247 PP+GLYF Y Sbjct: 234 PPDGLYFIQCYYP 246 >gi|324015393|gb|EGB84612.1| tRNA pseudouridine synthase A [Escherichia coli MS 60-1] Length = 270 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAGLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|322831951|ref|YP_004211978.1| tRNA pseudouridine synthase A [Rahnella sp. Y9602] gi|321167152|gb|ADW72851.1| tRNA pseudouridine synthase A [Rahnella sp. Y9602] Length = 276 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 135/247 (54%), Gaps = 8/247 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS YFGWQRQ+ +S+Q +EKA+ V +VV AGRTD+GV A QV Sbjct: 17 RVALGIEYDGSAYFGWQRQQGVASVQECLEKALSRVANAPIVVFCAGRTDAGVSATGQVV 76 Query: 63 HFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD PV+ A + + I++ + V + FHARFSA R Y Y I Sbjct: 77 HFD-----TPVLRKDAAWTMGVNTHLPKDIAVRWCANVGEDFHARFSATARRYRYVIYNN 131 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A+ + LD E M++A Q L+G +DFT+FR+ CQ+ +P R + H +V+ Sbjct: 132 RYRSAILHAGVTHVHMPLDVEKMQLAGQALLGENDFTSFRASQCQSRTPWRYVMHVNVSR 191 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + + A +F+H +R+ VGSL +G G + + L A+DR PEGL Sbjct: 192 HGSYVVVDIKANAFVHHMVRNIVGSLVEIGAGNQPVGWMGELLAAKDRNLAAATGKPEGL 251 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 252 YLVCVDY 258 >gi|284009291|emb|CBA76427.1| tRNA pseudouridine synthase A [Arsenophonus nasoniae] Length = 270 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y+GWQRQ+ SIQ +E A+ V E + V AGRTD+GVHA Q Sbjct: 9 MFKIALGIEYDGSHYYGWQRQQQVKSIQACVESALTKVAHESIQVCCAGRTDAGVHATGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +N++L I++ V+ FHARFSA R Y Y I + Sbjct: 69 VIHFETSVIRKDSAWTMGVNSHLPAD--IAVRWSKDVEPDFHARFSATARRYRYIIFNHR 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ LD E M IAAQ LVG DFT+FR+I CQ+ SP R I H VN + Sbjct: 127 YRPAILAAGVTHYHAPLDAEKMHIAAQALVGEQDFTSFRAIQCQSKSPWRNIKHVHVNRY 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + + A +F+H +R+ VGSL +G G + + L +DR + A EGLY Sbjct: 187 GDYIVVDIKANAFVHHMVRNIVGSLLAIGCGVQDINWIAELLALKDRTKAAATAKAEGLY 246 Query: 241 FDSVEY 246 +V+Y Sbjct: 247 LVAVDY 252 >gi|262165233|ref|ZP_06032970.1| tRNA pseudouridine synthase A [Vibrio mimicus VM223] gi|262024949|gb|EEY43617.1| tRNA pseudouridine synthase A [Vibrio mimicus VM223] Length = 264 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVEVDY 243 >gi|238685503|sp|A3M1T4|TRUA_ACIBT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193076245|gb|ABO10878.2| tRNA-pseudouridine synthase I [Acinetobacter baumannii ATCC 17978] Length = 265 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 135/253 (53%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + A ++ ISI + +D++FHARF A R Y Y Sbjct: 61 MVAHFDTNAIRPERGWI-------MGANSQLPKDISIQWIKQMDEEFHARFKATARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H Sbjct: 114 VVYNAPHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + ++ A+DRK G A Sbjct: 174 CRLFEHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITA 233 Query: 235 PPEGLYFDSVEYS 247 PP+GLYF Y Sbjct: 234 PPDGLYFIQCYYP 246 >gi|325199128|gb|ADY94584.1| tRNA pseudouridine synthase A [Neisseria meningitidis G2136] Length = 265 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 135/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAVRPQQAWIRGVNAHLP--EGIAVLHARQVALEFHARFDAYGRHYRYLLESSPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA +L+G DF++FR+ CQA SPI+TI ++ Sbjct: 126 RSPLLKNRAGWTHLKLDIGPMRQAATYLIGEQDFSSFRAAECQAKSPIKTIYRANLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|170760365|ref|YP_001787307.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] gi|169407354|gb|ACA55765.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] Length = 246 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+ +DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEVEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|116051110|ref|YP_790059.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa UCBPP-PA14] gi|115586331|gb|ABJ12346.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 285 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 135/249 (54%), Gaps = 9/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ+ G S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT--- 118 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANLPAD--ISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R A LA E W + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + Sbjct: 137 RPAHLAEEV--TWNH-RPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLL 193 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G LI + + +FLH +R+ G L +G G+ ++ L+ +DR+ G A P G Sbjct: 194 EHGRLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLETRDRRAGGVTAHPYG 253 Query: 239 LYFDSVEYS 247 LY VEY Sbjct: 254 LYLVRVEYP 262 >gi|15807281|ref|NP_296011.1| pseudouridylate synthase I [Deinococcus radiodurans R1] gi|42559894|sp|Q9RS37|TRUA_DEIRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|6460099|gb|AAF11837.1|AE002061_4 pseudouridylate synthase I [Deinococcus radiodurans R1] Length = 280 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 136/248 (54%), Gaps = 7/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH-GAGRTDSGVHALRQV 61 R + + ++G Y GWQ Q+N S+Q +++ A+ + GE + AGRTD+GVHA Sbjct: 17 RLRLTVAWDGRDYAGWQEQRNAVSVQETLQTALHALGGEGALRPVSAGRTDAGVHAEAMP 76 Query: 62 AHFDLVREW-VPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H+D+ + VP++ L +ALNA+L S +S+L+ + FHARFS R Y+YR+ Sbjct: 77 LHWDVPTTFRVPLVQLPRALNAWLPAS--VSVLSAEVAPAGFHARFSCTERRYVYRLWVA 134 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GRA +P LD E M AAQ L+G HDF F + + + +R + +V Sbjct: 135 PQRHPLWAGRALHVPGPLDAEAMNRAAQSLIGLHDFAAFATREDRQT--VRDLLRLEVQP 192 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L +I V SFL +R VG+L LVG GK + ++E L +++R G PP GL Sbjct: 193 QGELWDIHVAGESFLRHMVRGLVGTLLLVGQGKLGAAEVEGILASRERARAGANVPPGGL 252 Query: 240 YFDSVEYS 247 YF EY Sbjct: 253 YFAGAEYG 260 >gi|229525612|ref|ZP_04415017.1| tRNA pseudouridine synthase A [Vibrio cholerae bv. albensis VL426] gi|229339193|gb|EEO04210.1| tRNA pseudouridine synthase A [Vibrio cholerae bv. albensis VL426] Length = 264 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 132/246 (53%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTSAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 178 SRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLY 237 Query: 241 FDSVEY 246 SV+Y Sbjct: 238 LVSVDY 243 >gi|240143728|ref|ZP_04742329.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|257204287|gb|EEV02572.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|291537295|emb|CBL10407.1| pseudouridylate synthase I [Roseburia intestinalis M50/1] gi|291539242|emb|CBL12353.1| pseudouridylate synthase I [Roseburia intestinalis XB6B4] Length = 251 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y MI++Y+G+ Y GWQ +IQG ++ + + G V V G+GRTD+GVHA Q Sbjct: 1 MANYKMILQYDGTRYRGWQVLPAELTIQGKLQDVLSKMAGYQVEVTGSGRTDAGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F L EW + LN YL + I++ + VD++FH+R+ A+ ++YLYRI T + Sbjct: 61 TANFHLREEWDEDKILFYLNQYL--PEDIAVCEVKRVDERFHSRYQAVEKTYLYRIHTGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E+ + + LD MR AA++L G HDF +F S +RTI + Sbjct: 119 IPEVFERRYVYDYTEPLDVNRMRKAAEYLCGTHDFKSFCGNKKMKKSTVRTISRIQIKEL 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I FL +R G+L +GDG+ T D+ + L+A++R+ G AP GL Sbjct: 179 PGEIQIYYTGNGFLQNMVRILTGTLIEIGDGRRTPEDVSEILEAKNRERAGYTAPACGLT 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LLEVIYG 245 >gi|332524310|ref|ZP_08400532.1| tRNA pseudouridine synthase A [Rubrivivax benzoatilyticus JA2] gi|332107641|gb|EGJ08865.1| tRNA pseudouridine synthase A [Rubrivivax benzoatilyticus JA2] Length = 274 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 127/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y G+ Y GWQ Q +G ++Q +E+A+ V AGRTD+GVHA QV Sbjct: 16 RIALGIAYRGARYHGWQSQPDGRTVQDVLERALGQFAATPVGTLCAGRTDAGVHAFNQVV 75 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD E + N YL D +++ VD +FHAR SA R Y + I+ Sbjct: 76 HFDAPVERDEFSWVRGTNRYLP--DDVAVQWCRRVDARFHARNSAQGRRYRFVILEAPVR 133 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+E G + + LD + MR AA HL+G HDF++FR+ CQA +P++T+ V G Sbjct: 134 PAIEAGACGWVFRPLDGDAMRAAAAHLIGEHDFSSFRAAGCQALTPVKTMRSIGVERRGA 193 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I A +FLH +R+ VG L VG G+ + + L A+ R P PP+GLYF Sbjct: 194 YWRIEFDASAFLHHMVRNIVGCLVTVGSGRQRPEWMAEVLAARSRDAAAPTFPPDGLYFV 253 Query: 243 SVEY 246 Y Sbjct: 254 GPYY 257 >gi|291618223|ref|YP_003520965.1| TruA [Pantoea ananatis LMG 20103] gi|291153253|gb|ADD77837.1| TruA [Pantoea ananatis LMG 20103] gi|327394617|dbj|BAK12039.1| tRNA pseudouridine synthase A TruA [Pantoea ananatis AJ13355] Length = 267 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 132/240 (55%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ+ S+Q +E+A+ V V V AGRTD+GVH QV HF+ V Sbjct: 13 IEYDGSRYYGWQRQQEVRSVQEKLERALSKVADHPVSVFCAGRTDAGVHGTGQVVHFETV 72 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L D I++ + V FHARFSA R Y Y I R P L Sbjct: 73 AQRADAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYLIYNQRLRPAILG 130 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 G LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 131 NGVTHFY-YPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVMHLNVTRHGPYVIV 189 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL +G G + + + + L A+DR A EGLY +V+Y Sbjct: 190 DIKANAFVHHMVRNIVGSLMEIGCGNQSESWMAELLAAKDRTLAAATAKAEGLYLVAVDY 249 >gi|168180502|ref|ZP_02615166.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|182668817|gb|EDT80795.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] Length = 246 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + V+++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVNERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|49083216|gb|AAT50973.1| PA3114 [synthetic construct] Length = 286 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 135/249 (54%), Gaps = 9/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ+ G S+Q ++E+A V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERASSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT--- 118 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANLPAD--ISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R A LA E W + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + Sbjct: 137 RPAHLAEEV--TWNH-RPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLL 193 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P G Sbjct: 194 EHGRLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYG 253 Query: 239 LYFDSVEYS 247 LY VEY Sbjct: 254 LYLVRVEYP 262 >gi|312962053|ref|ZP_07776550.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6] gi|311283863|gb|EFQ62447.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6] Length = 284 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 135/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++EKA+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVPTVQETLEKALSKVADSSVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQAERTMKAWV-------MGANINLPHDVSVSWAKVMPAHFHARFKAIARRYRYVI 130 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AAQHLVG HDF+ FR+ CQA SPI+ + H Sbjct: 131 YNDQIRPAHLNEEITW-NHRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I + + A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 190 RVTRHGKMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVDWAREVLESRIRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PFGLYLVDVEY 260 >gi|260869040|ref|YP_003235442.1| pseudouridylate synthase I [Escherichia coli O111:H- str. 11128] gi|257765396|dbj|BAI36891.1| pseudouridylate synthase I [Escherichia coli O111:H- str. 11128] gi|323176756|gb|EFZ62346.1| tRNA pseudouridine synthase A [Escherichia coli 1180] Length = 270 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVMRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|119897336|ref|YP_932549.1| tRNA pseudouridine synthase A [Azoarcus sp. BH72] gi|119669749|emb|CAL93662.1| pseudouridine synthase A [Azoarcus sp. BH72] Length = 265 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 131/251 (52%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY G + GWQ Q++G ++Q ++E A+ + GE V +H AGRTD+GVHA Q Sbjct: 1 MVRLALGVEYAGDRFEGWQSQRHGRTVQDALEAALSRIAGEAVKLHCAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSI-----VDKQFHARFSAIRRSYLYR 115 VAHFD + L+A+++ +T +++ VD FHARF A R Y Y Sbjct: 61 VAHFD-------TAAVRPLSAWIRGVNTHLPAGVAVRWAVEVDDAFHARFLAYERRYRYV 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + AL GR LD M AA+ LVG DF+ FR+ CQA +P+R + Sbjct: 114 LFNAPTRPALLAGRVGWFHLPLDEGAMAEAARCLVGMQDFSAFRAAECQAKTPVRDMREV 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G+ + A FLH IR+ VG+L VG G++ L + L +DR P Sbjct: 174 RVQRSGDYLIFDFRADGFLHHMIRNLVGALVYVGKGRYPPGWLAEVLAGRDRSRAAPTFA 233 Query: 236 PEGLYFDSVEY 246 P+GLY V Y Sbjct: 234 PDGLYLCGVSY 244 >gi|332290494|ref|YP_004421346.1| tRNA pseudouridine synthase A [Gallibacterium anatis UMN179] gi|330433390|gb|AEC18449.1| tRNA pseudouridine synthase A [Gallibacterium anatis UMN179] Length = 265 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + I Y+GS YFGWQ+Q++ SIQ +E+A+ + E + + AGRTD+GVHA Q Sbjct: 1 MKKIALGISYDGSRYFGWQKQQSVQSIQNELEQALSTIANEPIEIFCAGRTDAGVHATGQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HF+ ++ W+ + + + I++ + V++ FHARFSA+ R Y Y Sbjct: 61 VIHFETSASRPLQAWI-------FGTNVHLPNDIAVKWSTEVNEDFHARFSALSRRYRYI 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I R A+ LD + M IA Q+L+G +DF++FR+ CQ+ SP R + H Sbjct: 114 IYNRPQRFAILPTGITHHHYPLDEKLMHIAGQYLLGENDFSSFRAAQCQSKSPYRNVHHL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V+ G+ + + + A +F+H +R+ VGSL +VG+GK ++ LQ +DR P A Sbjct: 174 QVSRIGDYLIVDIQANAFVHHMVRNIVGSLLVVGEGKQKPEWIKWLLQQRDRSCAAPTAK 233 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 234 AAGLYLVKVHY 244 >gi|120554480|ref|YP_958831.1| tRNA pseudouridine synthase A [Marinobacter aquaeolei VT8] gi|120324329|gb|ABM18644.1| tRNA pseudouridine synthase A [Marinobacter aquaeolei VT8] Length = 302 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 132/250 (52%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +I EY+G + GWQ QK+G S++ + +A V V + AGRTD+GVHA QV Sbjct: 18 RVAIIFEYDGQAFHGWQLQKSGVRSVEAELSRAAARVADHPVDLVCAGRTDAGVHASFQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AHFD +R WV + + D IS+ FHARFSAI R Y Y I Sbjct: 78 AHFDTPSVRNLRSWV-------MGMNTALPDDISVHWAGNGQGDFHARFSAIYRRYRYVI 130 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +++G+ + LD E M A+Q LVG HDF++FR+ CQ+ +P+R ++ Sbjct: 131 YNHPVRPGIQRGQVSWTFRPLDAERMHRASQALVGEHDFSSFRAAGCQSRTPVRFLEQIS 190 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + I V A +FLH +R+ G+L VG+G+ + L+ +DRK G APP Sbjct: 191 VTRCGEFVVIDVQANAFLHHMVRNIAGALMAVGNGQQPEDWIGDILECRDRKLAGVTAPP 250 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 251 YGLYLVDVGY 260 >gi|323161584|gb|EFZ47470.1| tRNA pseudouridine synthase A [Escherichia coli E128010] Length = 270 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|77358715|ref|YP_338281.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 493] gi|153206765|ref|ZP_01945606.1| tRNA pseudouridine synthase A [Coxiella burnetii 'MSU Goat Q177'] gi|154705837|ref|YP_001424337.1| tRNA pseudouridine synthase A [Coxiella burnetii Dugway 5J108-111] gi|161830159|ref|YP_001596814.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 331] gi|165918506|ref|ZP_02218592.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 334] gi|212212657|ref|YP_002303593.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuG_Q212] gi|212218370|ref|YP_002305157.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuK_Q154] gi|226708643|sp|B6J6W3|TRUA_COXB1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708644|sp|B6J0H0|TRUA_COXB2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708645|sp|A9KFZ5|TRUA_COXBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708646|sp|A9ND24|TRUA_COXBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71066705|gb|AAZ22627.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 493] gi|120577128|gb|EAX33752.1| tRNA pseudouridine synthase A [Coxiella burnetii 'MSU Goat Q177'] gi|154355123|gb|ABS76585.1| tRNA pseudouridine synthase A [Coxiella burnetii Dugway 5J108-111] gi|161762026|gb|ABX77668.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 331] gi|165917752|gb|EDR36356.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 334] gi|212011067|gb|ACJ18448.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuG_Q212] gi|212012632|gb|ACJ20012.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuK_Q154] Length = 261 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 133/252 (52%), Gaps = 14/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+GS Y GWQ Q+ ++QG +EKA+ V V V AGRTD+GVHA Q Sbjct: 1 MARIALGIRYDGSAYHGWQVQEALKTVQGEVEKALSAVANHPVFVTCAGRTDAGVHASAQ 60 Query: 61 VAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 VAHFD WV A + ISIL V++ FHAR+SA+ R Y Y Sbjct: 61 VAHFDTTAYRSDHAWV-------FGANSNLPHDISILWAKAVEEDFHARYSAMARRYRYI 113 Query: 116 IITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + P L K W + LD + M+ AQ+L+G HDF++F+ CQ+ +P+R I Sbjct: 114 VYNHEIRPAILRKAIGWHY-RPLDEKRMQAGAQYLIGEHDFSSFQGAGCQSRTPVRKIFQ 172 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ ++ I V A +FL +R+ G L +G G+ + L+A+DR++ G Sbjct: 173 IEIYRIRRMVVIEVQANAFLLHMVRNIAGVLIAIGSGEKHPDWAQTVLKAKDRRQGGVTV 232 Query: 235 PPEGLYFDSVEY 246 PP GLY V Y Sbjct: 233 PPNGLYLVEVNY 244 >gi|114562572|ref|YP_750085.1| tRNA pseudouridine synthase A [Shewanella frigidimarina NCIMB 400] gi|122300225|sp|Q084R8|TRUA_SHEFN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114333865|gb|ABI71247.1| tRNA pseudouridine synthase A [Shewanella frigidimarina NCIMB 400] Length = 261 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS + GWQRQ S+Q IEKA+ V E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSSFCGWQRQLEVDSVQAQIEKALSYVANEPITVSCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + +NA + D+++I VD FHAR+SA R Y Y I + Sbjct: 61 VHFDTDVQRPMTAWTQGVNA--NLPDSVAIRWAKEVDDSFHARYSATARRYRYVIYNHKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +D M AAQ VG HDFT+FR++HCQ+ +P R + +V G Sbjct: 119 RPGILSAGVSHYHGDIDETLMHKAAQLFVGEHDFTSFRALHCQSKTPFRNVHQVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G + + ++RK P A P GLY Sbjct: 179 MYVMVDIQANAFLHHMVRNIVGSLLQIGLGNQPIEWITELFALKNRKLAAPTAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|74312835|ref|YP_311254.1| tRNA pseudouridine synthase A [Shigella sonnei Ss046] gi|123759585|sp|Q3YZP3|TRUA_SHISS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|73856312|gb|AAZ89019.1| pseudouridylate synthase I [Shigella sonnei Ss046] gi|323168509|gb|EFZ54189.1| tRNA pseudouridine synthase A [Shigella sonnei 53G] Length = 270 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPERWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|240129104|ref|ZP_04741765.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] gi|268687486|ref|ZP_06154348.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] gi|268627770|gb|EEZ60170.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] Length = 265 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRTGLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|330837397|ref|YP_004412038.1| tRNA pseudouridine synthase A [Spirochaeta coccoides DSM 17374] gi|329749300|gb|AEC02656.1| tRNA pseudouridine synthase A [Spirochaeta coccoides DSM 17374] Length = 299 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/256 (38%), Positives = 141/256 (55%), Gaps = 15/256 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R M + Y+G+GY GWQ Q+N S+Q IE A++ +TG V V G+GRTDSGVHAL QV Sbjct: 21 RVRMTVAYDGTGYSGWQHQRNAPSVQAEIEDALYRLTGHSVTVVGSGRTDSGVHALGQVC 80 Query: 63 HFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL E P V+ +ALNA+L + I I++ + FHARFSA+ R Y Y +I R+A Sbjct: 81 HFDLPDERFPAVVFKRALNAFLPPA--IRIMDSEETNDSFHARFSAMAREYRY-LIKREA 137 Query: 122 PLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVN 178 + + GR W++ + E ++ A + G HDFTTF + C+ + F V Sbjct: 138 DMTPFDSGRVWVVKELPSLELLKAHAAEIAGTHDFTTFTAAGDMCERRHRDIYVSDFSVE 197 Query: 179 SFGNLIEIRV---VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + E+ V +FL+ +RS VG+L + G +T+ + L A+DR + G A Sbjct: 198 KDIHGAEVLVYTICGNAFLYKMVRSIVGTLFFLVLGGVPATETARRLAARDRSQAGRTAS 257 Query: 236 PEGLY-----FDSVEY 246 GLY FD EY Sbjct: 258 AHGLYLSRISFDEKEY 273 >gi|194429433|ref|ZP_03061956.1| tRNA pseudouridine synthase A [Escherichia coli B171] gi|194412494|gb|EDX28793.1| tRNA pseudouridine synthase A [Escherichia coli B171] gi|195183057|dbj|BAG66617.1| pseudouridylate synthase I [Escherichia coli O111:H-] Length = 270 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|149175153|ref|ZP_01853776.1| tRNA pseudouridine synthase A [Planctomyces maris DSM 8797] gi|148846131|gb|EDL60471.1| tRNA pseudouridine synthase A [Planctomyces maris DSM 8797] Length = 267 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 132/264 (50%), Gaps = 27/264 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+GS Y GWQ Q NG S+Q +EKAI +T + V AGRTD+GVHAL QVA F Sbjct: 6 LTLAYDGSEYAGWQVQPNGPSVQACVEKAIEQLTQQRSPVLVAGRTDAGVHALGQVASFQ 65 Query: 66 LVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 I CK L L+ + ++I + + V FHA +SAI++ Y Y I P Sbjct: 66 TES----AIPCKNLQTGLQRFLPESICVREVREVPPDFHATYSAIQKRYRYVIHNSAVPY 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-- 181 K + LD + M A Q L+G+HDF F S + ++ +RTI V G Sbjct: 122 PFLKKYVSEFGRPLDSDRMHAAGQQLLGQHDFRCFESHYPNKATSVRTITELTVQRTGVW 181 Query: 182 -------------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 I + VVA FL+ +R+ VG+L VG G+WTS D++K L Sbjct: 182 PVWGVLEQAHLSMENSTSAEFITVDVVADGFLYNMVRAIVGTLLDVGVGRWTSNDVQKIL 241 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 DR + GP AP GLY V+Y Sbjct: 242 TGMDRSQAGPTAPACGLYLVQVDY 265 >gi|261868098|ref|YP_003256020.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413430|gb|ACX82801.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D11S-1] Length = 261 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 139/252 (55%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQRQ+ +SIQ +E+AI +V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKHYFGWQRQEKVASIQAELERAISVVANEDIGIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L D I++ +V+ FHARFSA R Y Y Sbjct: 61 LHFETTAQRPEKAWSFGVNANL--PDDIAVRWAKVVEDDFHARFSATARRYRYI------ 112 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 L K R+ ++P+ LD + M A Q L+G +DF++FR+ CQ+++P R + H Sbjct: 113 -LYCNKLRSAILPQGVTHYHLELDHQLMHGAGQALLGENDFSSFRAAQCQSNTPWRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A Sbjct: 172 LNVTRQGQYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWMKWLLEQKDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 PEGLY +V Y Sbjct: 232 KPEGLYLVNVIY 243 >gi|124267346|ref|YP_001021350.1| tRNA pseudouridine synthase A [Methylibium petroleiphilum PM1] gi|166228739|sp|A2SHS6|TRUA_METPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124260121|gb|ABM95115.1| Pseudouridylate synthase [Methylibium petroleiphilum PM1] Length = 260 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 124/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y G Y GWQ Q +G ++Q +E+A+ V AGRTD+GVHAL QV Sbjct: 1 MRLALGLSYRGGAYRGWQSQPDGLTVQDRVEEALARFADRPVRTVCAGRTDAGVHALNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D E P + N YL I++ VD FHAR SA R Y Y ++ Sbjct: 61 VHLDTEIEREPFSWVRGTNRYLP--PDIAVQWCRPVDAAFHARNSARGRRYAYLLLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+E G + + LD MR AA HL+G HDF+ FRS CQA+SP++ + ++ G Sbjct: 119 RPAIEAGAVGWVFRPLDATPMREAAAHLIGEHDFSAFRSAECQAASPVKNLRRIEIVRCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH +R+ +G L VG G L + L A DR+ P P+GLYF Sbjct: 179 AYWRFEFEASAFLHHMVRNLMGCLLAVGQGVRAPQWLAEVLAAGDRRRAAPTFAPDGLYF 238 Query: 242 DSVEY 246 +Y Sbjct: 239 LGPQY 243 >gi|192361259|ref|YP_001982227.1| tRNA pseudouridine synthase A [Cellvibrio japonicus Ueda107] gi|190687424|gb|ACE85102.1| tRNA pseudouridine synthase A [Cellvibrio japonicus Ueda107] Length = 299 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/253 (37%), Positives = 138/253 (54%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY G+ + G+Q Q NG ++Q S+EKA+ +V E + + AGRTD+GVHA Sbjct: 28 MRRVALGVEYKGADFHGFQVQPNGVKTVQQSLEKALSIVADEPITLVCAGRTDAGVHATN 87 Query: 60 QVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD + + + L A+++ + DTI I V FHARFSA R+Y Y Sbjct: 88 QVIHFDTLAQ-------RPLKAWMRGLGPHLPDTIGIRWAQDVSPGFHARFSAQSRTYRY 140 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + AL + + LD MR A L+G HDFT+FR+ CQA SP+R I++ Sbjct: 141 LMSDGASSPALLHDQVSWSSRPLDVALMRQGAACLIGEHDFTSFRATQCQAKSPVRRIEY 200 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G LI + + A +FLH +R+ VG L VG G + + L A+DR G A Sbjct: 201 LHLVRRGELIVMEIRANAFLHHMVRNIVGVLMQVGAGFKKPSWVGDVLAARDRTAAGATA 260 Query: 235 PPEGLYFDSVEYS 247 P GLY +V+Y Sbjct: 261 KPNGLYLVAVDYP 273 >gi|283832251|ref|ZP_06351992.1| tRNA pseudouridine synthase A [Citrobacter youngae ATCC 29220] gi|291071892|gb|EFE10001.1| tRNA pseudouridine synthase A [Citrobacter youngae ATCC 29220] Length = 270 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVSVFCAGRTDAGVHGTGQVVHFETH 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLG 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V FG + + Sbjct: 134 KGVTHYY-EPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVERFGAYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|229056264|ref|ZP_04195685.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603] gi|228721069|gb|EEL72607.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603] Length = 268 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEVDAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y + +E+ Sbjct: 262 YLEKIEF 268 >gi|240118890|ref|ZP_04732952.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|240126753|ref|ZP_04739639.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] gi|268604599|ref|ZP_06138766.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|268685331|ref|ZP_06152193.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] gi|268588730|gb|EEZ53406.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|268625615|gb|EEZ58015.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] Length = 265 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRAGLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|253996350|ref|YP_003048414.1| tRNA pseudouridine synthase A [Methylotenera mobilis JLW8] gi|253983029|gb|ACT47887.1| tRNA pseudouridine synthase A [Methylotenera mobilis JLW8] Length = 261 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + + Y+GS Y GWQ Q + +Q ++E A+ V V VH AGRTD+GVHAL Q+ Sbjct: 1 MKIALGVSYDGSLYCGWQSQPSACGVQDALESALQDVAQHAVRVHAAGRTDTGVHALGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + + +NA+L TI + VD FHARFSA RSY Y + Sbjct: 61 VHFETDAKRPLSAWVRGVNAHLPA--TIRVEWAHAVDDDFHARFSAFSRSYQYLLYNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +A LD M AA +L+G HDFT FR+ CQA + IR + V G Sbjct: 119 ASALMADKAGWFHLPLDYAAMSEAASYLIGEHDFTAFRASECQAKTAIRHMSQAGVVQSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FL Q+R+ VG+L +G GK+ + + LQ +DR P P GLY Sbjct: 179 QFFLFNFSANAFLQHQVRNMVGALIYIGKGKYPPAYMRELLQGKDRTLSPPTFSPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TDVGY 243 >gi|259907892|ref|YP_002648248.1| tRNA pseudouridine synthase A [Erwinia pyrifoliae Ep1/96] gi|224963514|emb|CAX55004.1| tRNA pseudouridylate synthase I [Erwinia pyrifoliae Ep1/96] gi|283477767|emb|CAY73683.1| pseudouridylate synthase I [Erwinia pyrifoliae DSM 12163] Length = 271 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 130/239 (54%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH QV HF+ Sbjct: 17 IEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADRPIAVFCAGRTDAGVHGTGQVVHFETT 76 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + +NA L I++ + V FHARFSA R Y Y I ++ A+ Sbjct: 77 AQRKDAAWTLGVNANLPAD--IAVRWVKAVADDFHARFSATARRYRYVIYNQRLRPAILA 134 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H V+ G + + Sbjct: 135 GGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLKVSRHGAYVVVD 194 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL +G G + + L A+DRK A EGLY +V+Y Sbjct: 195 IKANAFVHHMVRNIVGSLMEIGCGNQPEGWMRELLVAKDRKLAAATARAEGLYLVAVDY 253 >gi|271501293|ref|YP_003334318.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech586] gi|270344848|gb|ACZ77613.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech586] Length = 292 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 136/247 (55%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+QG +E A+ V E + V AGRTD+GVHA QV Sbjct: 13 LKIALGIEYDGSRYYGWQRQAEVGSVQGCLEAALSQVANERIDVFCAGRTDAGVHATGQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 HF +NA L I++ + VD+ FHARFSA R Y Y I R+ Sbjct: 73 VHFTTNAVRKDAAWTMGVNANLPPD--IAVRWVKTVDEAFHARFSATARRYRYVIYNRRF 130 Query: 121 APLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L G + +P LD + M A Q L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 131 RPAILSHGVTHYYLP--LDADRMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVTR 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + + A +F+H +R+ VGSL +G G +++ L A+DR A +GL Sbjct: 189 LGDYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPENWMDELLAAKDRTLAAATAKADGL 248 Query: 240 YFDSVEY 246 Y +V+Y Sbjct: 249 YLVAVDY 255 >gi|304311263|ref|YP_003810861.1| tRNA pseudouridine synthase A [gamma proteobacterium HdN1] gi|301796996|emb|CBL45209.1| tRNA pseudouridine synthase A [gamma proteobacterium HdN1] Length = 265 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + IEY+GS Y GWQRQ + +++Q +E A+ V V V GRTD+GVH Q Sbjct: 1 MRIALGIEYDGSPYHGWQRQGHEPNTVQQILESALSQVADHPVTVICCGRTDAGVHGYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P NA L S IS+ V + FHARFSA R Y Y I Sbjct: 61 VVHFDTHAMRTPRAWIHGANAALPHS--ISVRWSQEVPEHFHARFSAYARRYCYVIYNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + LD M AQ LVG HDFT+FR++ CQA SPI+TI V Sbjct: 119 IRPALGMRHMTWQYRPLDERQMEEGAQALVGTHDFTSFRALGCQAKSPIKTIHSIRVERR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I I V A ++LH +R+ G L VG GK S +++ L+ +DR G APP GLY Sbjct: 179 GAMIFISVHANAYLHHMVRNIAGVLMAVGTGKAASRWVKEVLELRDRSRGGVTAPPYGLY 238 Query: 241 FDSVEY 246 F +Y Sbjct: 239 FMEAQY 244 >gi|325141434|gb|EGC63912.1| tRNA pseudouridine synthase A [Neisseria meningitidis 961-5945] Length = 265 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTIVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTAAARPQQAWVRGVNAHLP--EGIAVLHARQVAPEFHARFDAYGRHYRYLLESVPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIGPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQSS 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|310768198|gb|ADP13148.1| tRNA pseudouridine synthase A [Erwinia sp. Ejp617] Length = 271 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH QV HF+ Sbjct: 17 IEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADRPIAVFCAGRTDAGVHGTGQVVHFETT 76 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + +NA L I++ + V FHARFSA R Y Y I ++ A+ Sbjct: 77 AQRKDAAWTLGVNANLPAD--IAVRWVKAVADDFHARFSATARRYRYVIYNQRLRPAILA 134 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G + + Sbjct: 135 GGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLNVSRHGAYVVVD 194 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL +G G + + L A+DRK A EGLY +V+Y Sbjct: 195 IKANAFVHHMVRNIVGSLIEIGCGNQPEGWMRELLVAKDRKLAAATARAEGLYLVAVDY 253 >gi|187478755|ref|YP_786779.1| tRNA pseudouridine synthase A [Bordetella avium 197N] gi|123738625|sp|Q2KYM0|TRUA_BORA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115423341|emb|CAJ49875.1| tRNA pseudouridine synthase A [Bordetella avium 197N] Length = 267 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/253 (37%), Positives = 140/253 (55%), Gaps = 14/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q ++E A+ F TG + AGRTD+GVHA Sbjct: 1 MTRIALGLSYDGSSWQGWQTQPHGQTVQDTLEAALGQFSGTGAPLDTLCAGRTDTGVHAA 60 Query: 59 RQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 QV H D WV + +NA+L S ISI V + FHARFSA R+Y+ Sbjct: 61 MQVVHVDTHLNRRAESWV-----RGVNAFLPSS--ISIHWAKEVGEDFHARFSARSRTYV 113 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + + AL RA + LD MR AAQ L+G HDF++FRS CQA P+R + Sbjct: 114 YLLWRGRVRPALWAHRAGWCFQPLDVTAMRQAAQALLGEHDFSSFRSSQCQARHPVRHLT 173 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 D+ G+ + + A +FLH +R+ +G+L +G G+ + + L+A+DR+ P Sbjct: 174 RLDIAERGSFLVFTLQANAFLHHMVRNIMGALLQIGQGRESVDWMASLLRARDRRLGAPT 233 Query: 234 APPEGLYFDSVEY 246 P+GLY +++Y Sbjct: 234 FSPDGLYLSAIDY 246 >gi|323483257|ref|ZP_08088647.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323691247|ref|ZP_08105522.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] gi|323403355|gb|EGA95663.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323504587|gb|EGB20374.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] Length = 341 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KA+ + E V V GA RTDSGVHA Sbjct: 1 MKRIKLTVAYDGTAYCGWQIQPNGVTIEEVLNKALTGLLKEPVTVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN ++ D I + V FH R + ++Y Y+I+ R+ Sbjct: 61 VAVFDTESRIPGDKICFALNQ--RLPDDIRVQASEEVPLSFHPRKANCTKTYEYKILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LE+ + +LD E M+ AA LVG HDF +F ++ QA +RTI DV+ Sbjct: 119 ISMPLERLYSHFCYFNLDVEKMKQAAAFLVGEHDFKSFCTVRTQAEETVRTIYSLDVSKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R G+L VG G + +E+ L+A+DR GP P GL Sbjct: 179 GDMITIRISGSGFLYNMVRIITGTLVKVGLGVYPPEHMEEILEARDRSAAGPTIPAVGLT 238 Query: 241 FDSVEYS 247 S+EY Sbjct: 239 LVSLEYE 245 >gi|325523908|gb|EGD02125.1| tRNA pseudouridine synthase A [Burkholderia sp. TJI49] Length = 270 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQNALEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + NA+L S +++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLDREPFSWVRGTNAFLPPS--VAVQWAKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDRRAGWIHTPLDDDAMRTAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWMAAVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|320174675|gb|EFW49808.1| tRNA pseudouridine synthase A [Shigella dysenteriae CDC 74-1112] Length = 270 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 VPRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|320540467|ref|ZP_08040117.1| pseudouridylate synthase I [Serratia symbiotica str. Tucson] gi|320029398|gb|EFW11427.1| pseudouridylate synthase I [Serratia symbiotica str. Tucson] Length = 273 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQ+Q+ +S+QG +E+A+ V + V AGRTDSGVHA QV HF+ Sbjct: 18 IEYDGSRYYGWQQQREVASVQGCLEQALSKVADAPINVLCAGRTDSGVHATGQVVHFETS 77 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +N +L I++ +S V FHARFSAI R Y Y I R P L+ Sbjct: 78 ARRKDAAWSMGVNTHL--PPDIAVRWVSAVADDFHARFSAIARRYRYIIYNHRNRPAVLQ 135 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 +G LD M AAQ L+G +DFT+FR+ CQ+ +P R + H V G I + Sbjct: 136 QGVTHFY-HPLDAVRMHRAAQALLGENDFTSFRAAQCQSRTPWRKVKHVKVTRQGEYIVV 194 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL +G GK L + L +DR A EGLY SV+Y Sbjct: 195 DIKANAFVHHMVRNIVGSLMEIGCGKRNENWLAELLALRDRNLAAATARAEGLYLVSVDY 254 >gi|229171272|ref|ZP_04298862.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MM3] gi|228612229|gb|EEK69461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MM3] Length = 250 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN +L + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQHL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|260439477|ref|ZP_05793293.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] gi|291042704|ref|ZP_06568449.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] gi|291013373|gb|EFE05335.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] Length = 265 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDASGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAASLLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|225573074|ref|ZP_03781829.1| hypothetical protein RUMHYD_01265 [Blautia hydrogenotrophica DSM 10507] gi|225039560|gb|EEG49806.1| hypothetical protein RUMHYD_01265 [Blautia hydrogenotrophica DSM 10507] Length = 245 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 135/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +IQG + + + + GE + GA RTD+GVHA+ Sbjct: 1 MKRVGLIVAYDGTNYCGWQVQPNGITIQGELNRCLSELLGEEIETIGASRTDAGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN ++ + I I + FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTETRMPGEKISYALNQ--RLPEDIRIQLSEEMPMDFHPRYCDSVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ ++ LD + MR A +L+GRHDF +F Q S +RTI +V F Sbjct: 119 FQIPTERLYSYFYHYKLDEKKMREATSYLIGRHDFASFCGAGAQVKSTVRTIRSVEVERF 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IR+ FL+ +R G+L +G+G++ +++ L A+DR+ GP AP +GL Sbjct: 179 GDMVTIRISGEGFLYNMVRIIAGTLIEIGNGQYPPERMQEILDARDREWAGPTAPAKGLT 238 Query: 241 FDSVEYS 247 ++Y Sbjct: 239 LLGIQYE 245 >gi|90579292|ref|ZP_01235102.1| tRNA pseudouridine synthase A [Vibrio angustum S14] gi|90440125|gb|EAS65306.1| tRNA pseudouridine synthase A [Vibrio angustum S14] Length = 261 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V NA+L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFDINIDRKMVAWTMGANAHL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H V G Sbjct: 119 RPAILGNGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ +E L ++R G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEENPEWIEWLLAQKNRTLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|240081654|ref|ZP_04726197.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] gi|268597753|ref|ZP_06131920.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] gi|268551541|gb|EEZ46560.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] Length = 265 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDTAAVRPAQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|304411873|ref|ZP_07393484.1| tRNA pseudouridine synthase A [Shewanella baltica OS183] gi|307303359|ref|ZP_07583114.1| tRNA pseudouridine synthase A [Shewanella baltica BA175] gi|304349733|gb|EFM14140.1| tRNA pseudouridine synthase A [Shewanella baltica OS183] gi|306913719|gb|EFN44141.1| tRNA pseudouridine synthase A [Shewanella baltica BA175] Length = 261 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA + D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETHAIRNEGAWTLGVNA--NLPDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R I +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNIHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|228906232|ref|ZP_04070119.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 200] gi|228853388|gb|EEM98158.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 200] Length = 250 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|73541994|ref|YP_296514.1| tRNA pseudouridine synthase A [Ralstonia eutropha JMP134] gi|123774054|sp|Q46YW3|TRUA_RALEJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72119407|gb|AAZ61670.1| tRNA pseudouridine synthase [Ralstonia eutropha JMP134] Length = 273 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 141/250 (56%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E +I G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIAIGLHYDGAAFSGWQSQPHRNTVQDYLEDSIERFAGVRLLTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D + + +NA+L S I++ VD+ FHARF A R Y Y + T Sbjct: 61 VIHLDTTLDRTTFSWVRGINAFLPPS--IALQWARPVDESFHARFLAFERMYYYALYTGP 118 Query: 121 APLALEKGRA--WLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L GRA ++P + LD + M+ A++ L+G DF++FR+ CQA SP++T+ Sbjct: 119 HRVPLAHGRAGYLMLPPGQRLDVDAMQAASRCLLGEQDFSSFRAAECQAKSPVKTMYDVT 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + GN + +R A +FLH +R+ +G L VG G++ L + L A+DRK P P Sbjct: 179 LKADGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPPEWLAEVLAARDRKLAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V+Y Sbjct: 239 DGLYLADVKY 248 >gi|300312591|ref|YP_003776683.1| tRNA pseudouridine synthase [Herbaspirillum seropedicae SmR1] gi|300075376|gb|ADJ64775.1| tRNA pseudouridine synthase protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 137/274 (50%), Gaps = 32/274 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y+G+ + GWQ Q + ++Q +E A+ + + + AGRTDSGVHAL Q+ Sbjct: 13 RVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALQRFSTQPIATTCAGRTDSGVHALEQIV 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISI---LNLSIVDKQ------------------- 100 HFD + NA+L TI++ L VD Sbjct: 73 HFDTPIARDSFSWVRGTNAFLP--PTIAVRWACELPYVDDAAIASAASQAAELHGADRAG 130 Query: 101 --------FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 FHARFSAI R+Y Y + L G+A + LD + M AAQHL+G Sbjct: 131 ADSLSQFGFHARFSAIARTYHYVLYNHAVRTPLLAGKAGWTFRPLDADRMHRAAQHLIGE 190 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 HDFT+FR++ CQA SP+R ++ V G++I + A +FLH +R+ VGSL +VG GK Sbjct: 191 HDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRNIVGSLVVVGSGK 250 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + L +DR P P+GLY V+Y Sbjct: 251 QEPDWMGQVLALRDRSRAAPTFMPDGLYLARVDY 284 >gi|161502487|ref|YP_001569599.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189030140|sp|A9MJ57|TRUA_SALAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160863834|gb|ABX20457.1| hypothetical protein SARI_00531 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 270 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 V +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 ALRKDVAWTLGVNANL--PGDIAVRWVKAVADDFHARFSATARRYRYIIYNHRLRPAVLA 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG K LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G + + Sbjct: 134 KGVTHYY-KPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHISVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|8569326|pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution gi|8569327|pdb|1DJ0|B Chain B, The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution Length = 264 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 10 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 69 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 70 ALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 127 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 128 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 186 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 187 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 246 >gi|240124428|ref|ZP_04737384.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] gi|268683056|ref|ZP_06149918.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] gi|268623340|gb|EEZ55740.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] Length = 265 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRAGLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|300717686|ref|YP_003742489.1| tRNA pseudouridylate synthase I [Erwinia billingiae Eb661] gi|299063522|emb|CAX60642.1| tRNA pseudouridylate synthase I [Erwinia billingiae Eb661] Length = 271 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 134/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 12 KLALGIEYDGSHYYGWQRQQEVRSVQEKLEKALSKVADHPVSVFCAGRTDAGVHGTGQVV 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L D I++ + V FHARFSA R Y Y I R+ Sbjct: 72 HFETTSLRKDAAWTLGVNANL--PDDIAVRWVKPVSDDFHARFSATARRYRYVIYNRRLR 129 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V+ FG Sbjct: 130 PAILHGGVTHFYHPLDVERMQRAGQSLLGENDFTSFRAVQCQSRTPWRRVFHLNVSRFGA 189 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 190 YVIVDIKANAFVHHMVRNIVGSLMEVGCGNQQESWIAELLAAKDRTLAAATARAEGLYLV 249 Query: 243 SVEY 246 SV+Y Sbjct: 250 SVDY 253 >gi|160875946|ref|YP_001555262.1| tRNA pseudouridine synthase A [Shewanella baltica OS195] gi|189030142|sp|A9KTU7|TRUA_SHEB9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160861468|gb|ABX50002.1| tRNA pseudouridine synthase A [Shewanella baltica OS195] gi|315268141|gb|ADT94994.1| tRNA pseudouridine synthase A [Shewanella baltica OS678] Length = 261 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA + D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNA--NLPDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|157363557|ref|YP_001470324.1| tRNA pseudouridine synthase ACD [Thermotoga lettingae TMO] gi|166991166|sp|A8F526|TRUA_THELT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157314161|gb|ABV33260.1| tRNA pseudouridine synthase A [Thermotoga lettingae TMO] Length = 245 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+ Y+G+ + G+Q QK+ ++QG E+A+ + + V+ AGRTD+GVHA Q Sbjct: 1 MKRFMAIVSYDGTNFCGFQVQKDVRTVQGMFEQALERILKQRVITIAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD + + A+NA L D I + + VDK FH RF A RR Y Y I Q Sbjct: 61 IVCFDCYLDIDEESMKNAMNANL--PDDIYVRKVVEVDKNFHPRFDAKRRIYHYLIYNSQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW P L+ MR AA+ G HDF +F + +RTI V Sbjct: 119 EPNLFIRNYAWWFPYKLNICKMREAAKFFEGEHDFRSFMKSGDHRENTVRTIYRVRVLQL 178 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +I IRV RSFL +R+ VG+L VG G+W D+ + L+ +DR + APP GL Sbjct: 179 RGGIILIRVEGRSFLRRMVRNMVGALVKVGVGEWKPEDISRVLELKDRSKAAVTAPPHGL 238 Query: 240 YFDSVEY 246 Y +V++ Sbjct: 239 YLYAVDF 245 >gi|315634336|ref|ZP_07889623.1| tRNA pseudouridine synthase A [Aggregatibacter segnis ATCC 33393] gi|315476926|gb|EFU67671.1| tRNA pseudouridine synthase A [Aggregatibacter segnis ATCC 33393] Length = 261 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 136/252 (53%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQ+Q+ +S+Q +E+AI V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKRYFGWQKQEKVASVQAELEQAISTVANEEISIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ +VD FHARFSA R Y Y Sbjct: 61 IHFETTANRPEKAWSFGVNANL--PDDIAVRWAKVVDDDFHARFSATARRYRYI------ 112 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 L K R+ ++P+ LD + M A Q L+G +DF++FR+ CQ+++P R + H Sbjct: 113 -LYCNKLRSAILPQGITHCHLELDHQLMHQAGQALLGENDFSSFRAAQCQSNTPWRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V+ G I + + A +F+H +R+ VGSL VG G L L QDR P A Sbjct: 172 LNVSRQGQYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWLAWLLGQQDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 PEGLY +V Y Sbjct: 232 KPEGLYLVNVLY 243 >gi|16130253|ref|NP_416821.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. MG1655] gi|89109138|ref|AP_002918.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. W3110] gi|170081934|ref|YP_001731254.1| tRNA pseudouridine synthase A [Escherichia coli str. K-12 substr. DH10B] gi|238901493|ref|YP_002927289.1| pseudouridylate synthase I [Escherichia coli BW2952] gi|123176|sp|P07649|TRUA_ECOLI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; Short=PSU-I; AltName: Full=tRNA-uridine isomerase I gi|229557954|sp|B1X929|TRUA_ECODH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259550387|sp|C4ZVL1|TRUA_ECOBW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149242461|pdb|2NQP|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242462|pdb|2NQP|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242463|pdb|2NQP|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242464|pdb|2NQP|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242466|pdb|2NR0|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242467|pdb|2NR0|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242468|pdb|2NR0|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242469|pdb|2NR0|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242475|pdb|2NRE|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|41718|emb|CAA26522.1| unnamed protein product [Escherichia coli K-12] gi|1788657|gb|AAC75378.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. MG1655] gi|1799711|dbj|BAA16175.1| pseudouridylate synthase I [Escherichia coli str. K12 substr. W3110] gi|169889769|gb|ACB03476.1| tRNA pseudouridine synthase A [Escherichia coli str. K-12 substr. DH10B] gi|238863332|gb|ACR65330.1| pseudouridylate synthase I [Escherichia coli BW2952] gi|260448588|gb|ACX39010.1| tRNA pseudouridine synthase A [Escherichia coli DH1] gi|315136953|dbj|BAJ44112.1| tRNA pseudouridine synthase A [Escherichia coli DH1] Length = 270 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 ALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|293398170|ref|ZP_06642375.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62] gi|291611433|gb|EFF40503.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62] Length = 265 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRAGLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|328951248|ref|YP_004368583.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM 14884] gi|328451572|gb|AEB12473.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM 14884] Length = 249 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 130/248 (52%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY+G+ + G+QRQ G ++Q +E A+ + G + V AGRTD+GVHAL Sbjct: 1 MRRIKLTLEYDGTRFAGFQRQAKGERTVQAELESALAQIPGAVPKVVAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H+D P + ALN L + L FHAR+S R Y YRI+ R Sbjct: 61 MVVHYDTEDRIPPEKIPYALNRLL--PPDVRALAAEAAPPGFHARYSCHWRRYRYRILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q P AL + R W +PK LD M+ H +G HDF F + + + +RT+ + Sbjct: 119 QMPSALARERTWWVPKPLDANAMQQGLAHFLGEHDFKAFATQERRGT--VRTLYRARLER 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +V FL Q+R+ VG+L VG GK + L +RK+ GP APP+GL Sbjct: 177 CGEEIVIDLVGNGFLRGQVRAMVGTLVEVGLGKRDPDVIAWLLAHGERKDAGPSAPPQGL 236 Query: 240 YFDSVEYS 247 YF + Y+ Sbjct: 237 YFVAAGYA 244 >gi|229844824|ref|ZP_04464962.1| tRNA pseudouridine synthase A [Haemophilus influenzae 6P18H1] gi|229812205|gb|EEP47896.1| tRNA pseudouridine synthase A [Haemophilus influenzae 6P18H1] Length = 269 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + NA+L D I++ VD +FHARFSAI R Y Y + + Sbjct: 61 VHFETNAVRLEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSAIARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLFGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L ++R+ P A P+GLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|188533312|ref|YP_001907109.1| tRNA pseudouridine synthase A [Erwinia tasmaniensis Et1/99] gi|188028354|emb|CAO96215.1| tRNA pseudouridylate synthase I [Erwinia tasmaniensis Et1/99] Length = 271 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 11 VKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADCPVNVFCAGRTDAGVHGTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V +FHARFSA R Y Y I ++ Sbjct: 71 VHFETTAQRKDAAWTLGVNANLPAD--IAVRWVKAVPDEFHARFSATARRYRYIIYNQRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G Sbjct: 129 RPAILAGGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVIHLNVSRHG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + + A+DRK A EGLY Sbjct: 189 AYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPEGWMRELMIARDRKLAAATARAEGLYL 248 Query: 242 DSVEY 246 +V+Y Sbjct: 249 VAVDY 253 >gi|90408620|ref|ZP_01216774.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3] gi|90310264|gb|EAS38395.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3] Length = 261 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 132/246 (53%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQK+ S+Q +EKA+ +V V V+ AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTAYYGWQRQKDVISVQEELEKALSIVANHSVRVNCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +NA L I++ VD FHARFSA R Y Y I Sbjct: 61 IHFDTQAVRNDVAWTLGINANL--PKDIAVRWCKHVDDSFHARFSATARRYRYIIYNHVL 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD + M A Q +VG HDFT+FR++HCQA++P+R+I +V Sbjct: 119 RPGILNSGLSHY-HHLLDADKMHQAGQFIVGTHDFTSFRALHCQANTPVRSIHSLNVTRR 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I I + A +FLH +R+ GSL +G L L+ ++R A P GLY Sbjct: 178 ADFIIIDIKANAFLHHMVRNIAGSLIEIGQDNQKVDWLMTLLEYKNRARAAATAKPGGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LVEVDY 243 >gi|126174949|ref|YP_001051098.1| tRNA pseudouridine synthase A [Shewanella baltica OS155] gi|166229833|sp|A3D666|TRUA_SHEB5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125998154|gb|ABN62229.1| tRNA pseudouridine synthase A [Shewanella baltica OS155] Length = 261 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA + D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETQAIRNEGAWTLGVNA--NLPDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|94311405|ref|YP_584615.1| tRNA pseudouridine synthase A [Cupriavidus metallidurans CH34] gi|93355257|gb|ABF09346.1| pseudouridylate synthase I [Cupriavidus metallidurans CH34] Length = 278 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 141/248 (56%), Gaps = 6/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+GS Y GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL QV Sbjct: 5 RIAIGLHYDGSAYSGWQSQPHRNTVQDHLEDAIERFAGVRLLTTVAGRTDAGVHALGQVI 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT--RQ 120 H D + + +NA+L S I++ VD+ FHARF A R Y Y + T + Sbjct: 65 HLDTELDRDRFSWVRGVNAFLPPS--IALQWAEPVDENFHARFLAYERMYYYALYTGPHR 122 Query: 121 APLALEKGRAWLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 AP+ + ++P + LD E MR A+ L+G HDF+ FR+ CQA SP++T+ + Sbjct: 123 APMIHGRAGYLMLPHGQRLDTEAMRRASACLLGEHDFSAFRAAECQAKSPVKTMYDVTIE 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + GN + +R A +FLH +R+ +G L VG G++ + + + L+ ++R++ P P+G Sbjct: 183 ADGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPAEWMAEVLEGRNRQKAAPTFMPDG 242 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 243 LYLVDVKY 250 >gi|157161806|ref|YP_001459124.1| tRNA pseudouridine synthase A [Escherichia coli HS] gi|170019373|ref|YP_001724327.1| tRNA pseudouridine synthase A [Escherichia coli ATCC 8739] gi|188492228|ref|ZP_02999498.1| tRNA pseudouridine synthase A [Escherichia coli 53638] gi|194436017|ref|ZP_03068119.1| tRNA pseudouridine synthase A [Escherichia coli 101-1] gi|253772758|ref|YP_003035589.1| tRNA pseudouridine synthase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162327|ref|YP_003045435.1| tRNA pseudouridine synthase A [Escherichia coli B str. REL606] gi|256021997|ref|ZP_05435862.1| tRNA pseudouridine synthase A [Escherichia sp. 4_1_40B] gi|300948533|ref|ZP_07162627.1| tRNA pseudouridine synthase A [Escherichia coli MS 116-1] gi|300956414|ref|ZP_07168705.1| tRNA pseudouridine synthase A [Escherichia coli MS 175-1] gi|301023565|ref|ZP_07187329.1| tRNA pseudouridine synthase A [Escherichia coli MS 196-1] gi|301647579|ref|ZP_07247376.1| tRNA pseudouridine synthase A [Escherichia coli MS 146-1] gi|307138983|ref|ZP_07498339.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|312973422|ref|ZP_07787594.1| tRNA pseudouridine synthase A [Escherichia coli 1827-70] gi|331642958|ref|ZP_08344093.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|166991162|sp|A8A2I7|TRUA_ECOHS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030133|sp|B1IXM4|TRUA_ECOLC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157067486|gb|ABV06741.1| tRNA pseudouridine synthase A [Escherichia coli HS] gi|169754301|gb|ACA77000.1| tRNA pseudouridine synthase A [Escherichia coli ATCC 8739] gi|188487427|gb|EDU62530.1| tRNA pseudouridine synthase A [Escherichia coli 53638] gi|194424745|gb|EDX40730.1| tRNA pseudouridine synthase A [Escherichia coli 101-1] gi|242377951|emb|CAQ32720.1| tRNA pseudouridine synthase I [Escherichia coli BL21(DE3)] gi|253323802|gb|ACT28404.1| tRNA pseudouridine synthase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974228|gb|ACT39899.1| tRNA pseudouridine synthase A [Escherichia coli B str. REL606] gi|253978395|gb|ACT44065.1| tRNA pseudouridine synthase A [Escherichia coli BL21(DE3)] gi|299880800|gb|EFI89011.1| tRNA pseudouridine synthase A [Escherichia coli MS 196-1] gi|300316763|gb|EFJ66547.1| tRNA pseudouridine synthase A [Escherichia coli MS 175-1] gi|300451943|gb|EFK15563.1| tRNA pseudouridine synthase A [Escherichia coli MS 116-1] gi|301074269|gb|EFK89075.1| tRNA pseudouridine synthase A [Escherichia coli MS 146-1] gi|309702630|emb|CBJ01959.1| tRNA pseudouridine synthase A [Escherichia coli ETEC H10407] gi|310332017|gb|EFP99252.1| tRNA pseudouridine synthase A [Escherichia coli 1827-70] gi|315615587|gb|EFU96219.1| tRNA pseudouridine synthase A [Escherichia coli 3431] gi|323936608|gb|EGB32895.1| tRNA pseudouridine synthase A [Escherichia coli E1520] gi|323940985|gb|EGB37172.1| tRNA pseudouridine synthase A [Escherichia coli E482] gi|323961391|gb|EGB57002.1| tRNA pseudouridine synthase A [Escherichia coli H489] gi|323973098|gb|EGB68291.1| tRNA pseudouridine synthase A [Escherichia coli TA007] gi|331039756|gb|EGI11976.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|332344100|gb|AEE57434.1| tRNA pseudouridine synthase TruA [Escherichia coli UMNK88] Length = 270 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 ALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|229846251|ref|ZP_04466363.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1] gi|229811255|gb|EEP46972.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1] Length = 269 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 131/250 (52%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ + W A + D I++ VD +FHARFSA R Y Y + Sbjct: 61 VHFETNAVRPEKAW-------AFGTNANLPDDIAVAWAKQVDDEFHARFSATARRYRYIL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + A+ G LD E M A Q L+G HDF++FR+ CQ+ +P R + H + Sbjct: 114 YCNKLRSAILAGGMTHCHLDLDAEKMHQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLN 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P Sbjct: 174 VSRIGQYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKP 233 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 234 DGLYLVDVIY 243 >gi|56460125|ref|YP_155406.1| tRNA pseudouridine synthase A [Idiomarina loihiensis L2TR] gi|62901213|sp|Q5QUE5|TRUA_IDILO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56179135|gb|AAV81857.1| Pseudouridylate synthase (tRNA psi55) [Idiomarina loihiensis L2TR] Length = 261 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS Y+GWQRQ+ +S+Q +E+A+ + V V AGRTD+GVHA Q+ Sbjct: 1 MRMALCLEYDGSRYYGWQRQREVASVQQCVEEALSKIANAPVEVTCAGRTDAGVHATAQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ V +N+ L I++ VD +F ARFSA R Y Y I + Sbjct: 61 VHFDVPVPRADVAWTLGVNSNLPAG--IAVRWAREVDSEFSARFSATSRRYRYIIANTRF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M+ AAQ LVG HDFT FR+ HCQ+ +P R + V G Sbjct: 119 RPGIHSAGVSHYHQPLDAEVMQEAAQALVGEHDFTAFRASHCQSHTPFRKVSDLTVERRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ VGSL +VG + + L+ +DR + A P GLY Sbjct: 179 DYIIVDISANAFLHHMVRNIVGSLIVVGQHLQPPDWIGELLRQKDRTKAAATAKPGGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VAVTY 243 >gi|297521911|ref|ZP_06940297.1| tRNA pseudouridine synthase A [Escherichia coli OP50] Length = 259 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 10 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 69 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 70 ALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 127 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 128 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 186 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 187 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 246 >gi|300724021|ref|YP_003713336.1| pseudouridylate synthase I [Xenorhabdus nematophila ATCC 19061] gi|297630553|emb|CBJ91218.1| pseudouridylate synthase I [Xenorhabdus nematophila ATCC 19061] Length = 281 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 139/246 (56%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 16 VKIALGIEYDGSRYYGWQRQQEVRSVQECLEKALSQVANEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ + +N +L I++ + VD +FHARFSA R Y Y I R Sbjct: 76 VHFETSAQRKDAAWTMGVNTHLP--SNIAVRWIKTVDDEFHARFSATARRYRYVIFNHRY 133 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD + M AAQ L+G +DFT+FR++ CQ++SP R + H +V+ Sbjct: 134 RPAVLAQG-IMHFHSPLDEKKMHEAAQSLLGENDFTSFRAVQCQSNSPWRNMMHINVSRH 192 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + + A +F+H +R+ VGSL +G G + + L +DR + A +GLY Sbjct: 193 GHYIVVDIKANAFVHHMVRNIVGSLLEIGCGNQNIGWMAELLTLKDRTKAAATAKADGLY 252 Query: 241 FDSVEY 246 +V+Y Sbjct: 253 LVAVDY 258 >gi|309973317|gb|ADO96518.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2846] Length = 269 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSAI R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSAIARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLFGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|296131870|ref|YP_003639117.1| tRNA pseudouridine synthase A [Thermincola sp. JR] gi|296030448|gb|ADG81216.1| tRNA pseudouridine synthase A [Thermincola potens JR] Length = 246 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 136/244 (55%), Gaps = 6/244 (2%) Query: 6 MIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 M IEY+G+ Y G+Q+Q +N +IQ ++EKA+ +TGE + V GAGRTD+GVHAL QV + Sbjct: 6 MTIEYDGTSYHGFQKQADQNLPTIQEALEKALRKLTGEEISVTGAGRTDAGVHALGQVIN 65 Query: 64 FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +P +ALN+ L + I + FHA+F A +++Y Y I P Sbjct: 66 F-YTESSIPTGNFVRALNSVL--PEDIVAKDAVEAPGDFHAQFWAKKKTYRYTIFNDTVP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + +P L+ +NMR AA LVG+HDF+ FR+ A S IRT+ +V G Sbjct: 123 SVFYRRYSLFVPCKLNVDNMRKAASFLVGQHDFSAFRAAGSTARSSIRTMYRAEVEQEGE 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI + + A FL+ +R G+L +G GK +++ + + DR GP PP+GL Sbjct: 183 LIHVYLEANGFLYNMVRIITGTLLYIGQGKLRVEEMKDIIASGDRTLAGPTVPPQGLCLM 242 Query: 243 SVEY 246 VEY Sbjct: 243 RVEY 246 >gi|251792608|ref|YP_003007334.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus NJ8700] gi|247534001|gb|ACS97247.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus NJ8700] Length = 261 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 137/252 (54%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQ+Q+ +S+Q +E+AI V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKQYFGWQKQEKVASVQAELERAISTVANEEISIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D +++ +VD FHARFSA R Y Y Sbjct: 61 IHFETTANRPEKAWSFGVNANL--PDDVAVRWAKVVDDDFHARFSATARRYRY------- 111 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 L K R+ ++P+ LD + M A Q L+G +DF++FR+ CQ+++P R + H Sbjct: 112 ILYCNKLRSAILPQGVTHCHLELDHQLMHQAGQALLGENDFSSFRAAQCQSNTPWRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V+ G I + + A +F+H +R+ VGSL VG G + L L +DR P A Sbjct: 172 LNVSRQGQYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQSVEWLAWLLAQKDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 PEGLY +V Y Sbjct: 232 KPEGLYLVNVFY 243 >gi|217972794|ref|YP_002357545.1| tRNA pseudouridine synthase A [Shewanella baltica OS223] gi|254764864|sp|B8EEB7|TRUA_SHEB2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217497929|gb|ACK46122.1| tRNA pseudouridine synthase A [Shewanella baltica OS223] Length = 261 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA + D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETHAIRNEGAWTLGVNA--NLPDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|240015157|ref|ZP_04722070.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI18] gi|240122134|ref|ZP_04735096.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID24-1] Length = 265 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDTTAARPQQAWVRGVNAHLP--EGIAVLHARQVAPGFHARFDAYGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD E M AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLKLDIEPMCRAASLLVGEQDFSSFRAAGCQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|50083718|ref|YP_045228.1| tRNA pseudouridine synthase A [Acinetobacter sp. ADP1] gi|51316594|sp|Q6FEV2|TRUA_ACIAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49529694|emb|CAG67406.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ADP1] Length = 271 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 134/252 (53%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G Y GWQ Q+ G SIQ +IEK + + E +++HGAGRTD+GVHA Sbjct: 2 MQRYAVGIEFCGIRYRGWQTQQAGVPSIQETIEKVLSKIADEPIILHGAGRTDAGVHATN 61 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + A ++ ISI + ++ FHARF A R Y Y Sbjct: 62 MVAHFDTNAIRPQRGWL-------MGANSQLPKDISIQWIKEMNTDFHARFKATARRYRY 114 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + + ++LD + M +AA+ G H+F TFR+ CQ+S P+R + H Sbjct: 115 VVYNTLNRPALLHKQVTHVYQTLDVDKMMLAARKFEGTHNFETFRAASCQSSQPVRHLSH 174 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + ++ AQDRK G A Sbjct: 175 CRLTRHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGCYEIEHIDTMFAAQDRKAAGVTA 234 Query: 235 PPEGLYFDSVEY 246 P +GLYF Y Sbjct: 235 PADGLYFIQAYY 246 >gi|260914049|ref|ZP_05920522.1| tRNA pseudouridine synthase A [Pasteurella dagmatis ATCC 43325] gi|260631682|gb|EEX49860.1| tRNA pseudouridine synthase A [Pasteurella dagmatis ATCC 43325] Length = 264 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 134/252 (53%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I+YNG YFGWQRQ+ +S+Q +EKAI V E + AGRTDSGVHA QV Sbjct: 1 MKVALGIQYNGKNYFGWQRQERVASVQEELEKAISFVANEHCQIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D IS+ IVD+ FHARFSA R Y Y Sbjct: 61 IHFETNANRPEKAWSFGVNANL--PDDISVSWAKIVDEDFHARFSANARRYRYI------ 112 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 L K R+ ++PK LD + M A Q L+G +DF++FR+ CQ+ +P R + H Sbjct: 113 -LYCNKLRSAILPKGITHCHLELDHQLMHQAGQVLLGENDFSSFRASQCQSHTPFRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G I + + A +F+H +R+ VGSL +G G + L +DR P A Sbjct: 172 LNVIRRGQYIIVDIQANAFVHHMVRNIVGSLIEIGAGHQPVEWMSWLLAQKDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 PEGLY +V Y Sbjct: 232 KPEGLYLVNVIY 243 >gi|330962608|gb|EGH62868.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 274 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + IS+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERSLKAWV-------MGANINLPHDISVSWARVMPATFHARFKAIARRYRYVI 120 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA HLVG HDF+ FR+ CQA SP++ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAAHLVGTHDFSAFRAGQCQAKSPVKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWAREVLESKVRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVQVEY 250 >gi|110834324|ref|YP_693183.1| tRNA pseudouridine synthase A [Alcanivorax borkumensis SK2] gi|123149458|sp|Q0VPI7|TRUA_ALCBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110647435|emb|CAL16911.1| Pseudouridylate synthase [Alcanivorax borkumensis SK2] Length = 267 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/252 (36%), Positives = 132/252 (52%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY+G+ + GWQ Q++G ++Q +E A+ V V V AGRTD+GVH Sbjct: 1 MTRIALGIEYDGTDFRGWQMQQSGVRTVQECLEAALSKVANHSVTVVCAGRTDAGVHGTG 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD ++ W+ + + ++I V FHARFSA+ R Y Y Sbjct: 61 QVVHFDSDAPREMKSWI-------MGGNTNLPRDVTIRWAVPVSDDFHARFSAVSRRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I P AL + + + LD MR AA +LVG HDFT +RS+HCQA SP++T+ Sbjct: 114 VIYNHARPPALYRSQVTWNHRPLDVAAMREAASYLVGHHDFTAYRSVHCQAKSPLKTLHS 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ G ++ + A +FL +R+ G L VG GK + L+ +DR+ A Sbjct: 174 LELYEQGKVLVLEAHANAFLMHMVRNIAGVLMKVGAGKKPPVWAKDVLECRDRRLGAATA 233 Query: 235 PPEGLYFDSVEY 246 PP GLY +EY Sbjct: 234 PPFGLYLVEIEY 245 >gi|184156753|ref|YP_001845092.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ACICU] gi|332873165|ref|ZP_08441122.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6014059] gi|238691030|sp|B2I367|TRUA_ACIBC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|183208347|gb|ACC55745.1| Pseudouridylate synthase [Acinetobacter baumannii ACICU] gi|322506645|gb|ADX02099.1| truA [Acinetobacter baumannii 1656-2] gi|323516520|gb|ADX90901.1| tRNA pseudouridine synthase A [Acinetobacter baumannii TCDC-AB0715] gi|332738677|gb|EGJ69547.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6014059] Length = 265 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 134/253 (52%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q+ G +S+Q +IE + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIELVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + A ++ ISI + +D++FHARF A R Y Y Sbjct: 61 MVAHFDTNAIRPERGWI-------MGANSQLPKDISIQWIKQMDEEFHARFKATARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H Sbjct: 114 VVYNAPHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + ++ A+DRK G A Sbjct: 174 CRLFEHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITA 233 Query: 235 PPEGLYFDSVEYS 247 PP+GLYF Y Sbjct: 234 PPDGLYFIQCYYP 246 >gi|154498331|ref|ZP_02036709.1| hypothetical protein BACCAP_02320 [Bacteroides capillosus ATCC 29799] gi|150272642|gb|EDM99820.1| hypothetical protein BACCAP_02320 [Bacteroides capillosus ATCC 29799] Length = 249 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 2/237 (0%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y G+ Y GWQ QKN +++ ++EKAI V G V GAGRTD+GVHA +A+F Sbjct: 10 YVGTAYHGWQIQKNAVTVEETLEKAIASVVGHPVKCTGAGRTDAGVHAENYIANFRTTST 69 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 L A+N ++ + I ++ + V F+A S I++ Y YRI + A R Sbjct: 70 IPCDRLPLAVNT--RLPEDIVVVKATEVHDGFNAIGSCIKKEYTYRIYNSRIRNAFFVNR 127 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 AW PK LD + M+ AA VG HDF +S+ + S +RT+ +F++ G++IE RV Sbjct: 128 AWFYPKHLDEKVMQAAADRFVGTHDFAAVQSVGTEVQSTVRTVHYFNMTRSGDMIECRVC 187 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A FL+ +R+ VG+ +GK+ + L+ + R GP APP GLY + Y Sbjct: 188 ANGFLYNMVRAMVGTCVYAAEGKFPPEAVSDILEGRCRTAAGPTAPPGGLYMTKLWY 244 >gi|148653728|ref|YP_001280821.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1] gi|148572812|gb|ABQ94871.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1] Length = 302 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 132/249 (53%), Gaps = 12/249 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + +E+NG+ Y GWQRQ+ +Q +E+ + + E + V AGRTD+GVH +AH Sbjct: 39 YALGVEFNGANYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDAGVHGGNMLAH 98 Query: 64 FDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 F V W+ + N+ L D I+I + + FHARF AI R Y Y + Sbjct: 99 FTTSAKRGVYNWL-----RGANSLLP--DDIAIRWIQPMPDTFHARFGAIARRYRYITLN 151 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + A+ I + LD M+ AA+H+VG HDF++FR+ CQ+ P+R I H + Sbjct: 152 QPQRPAVLNHLVTHIHEPLDLALMQQAAEHIVGTHDFSSFRAAACQSKQPVRNIHHAKLF 211 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I + A FLH +R+ +G+L +G G+ D + LQA+DR P APP+G Sbjct: 212 KHGEFIVFDIQADGFLHHMVRNLMGTLFAIGKGELQPEDYLRILQAKDRTIAPPTAPPDG 271 Query: 239 LYFDSVEYS 247 LYF + Y Sbjct: 272 LYFINAYYP 280 >gi|229523210|ref|ZP_04412617.1| tRNA pseudouridine synthase A [Vibrio cholerae TM 11079-80] gi|229339573|gb|EEO04588.1| tRNA pseudouridine synthase A [Vibrio cholerae TM 11079-80] Length = 264 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 132/246 (53%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EK++ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKSLSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-Q 120 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L +DR A GLY Sbjct: 178 GRYVVIDIKANAFVHHMVRNITGSLIAVGCGEQKPEWIQWLLAQKDRTLAAATAKAGGLY 237 Query: 241 FDSVEY 246 SV+Y Sbjct: 238 LVSVDY 243 >gi|255526613|ref|ZP_05393520.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296187301|ref|ZP_06855697.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|255509721|gb|EET86054.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296048172|gb|EFG87610.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 247 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 134/241 (55%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++IEY+G+ Y GWQRQ N SIQ +E+AI T V G+ RTD+GVHA V +F Sbjct: 9 LVIEYDGTNYCGWQRQDNAESIQQKVEEAIERATKVFSKVTGSSRTDAGVHAEGFVCNFF 68 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P +ALN +L + I I+ VDK+FH+RF++I + Y+Y ++T A+ Sbjct: 69 TESSIPPENFKEALNVFL--PEDIVIIESKEVDKEFHSRFNSIGKKYVYTVLTGSHRPAI 126 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + K+L+ M+ AA++ +G HDF+ F+ + IRTI +++ GN I+ Sbjct: 127 RRNYVYYFNKNLNIGQMKEAAKYFLGTHDFSAFKKSGSSVKTSIRTIKELNIDIDGNYIK 186 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 ++ FL+ +R VG+L VG ++ D++K + +++R G AP GL + V Sbjct: 187 FSIIGDGFLYNMVRIIVGTLLDVGTNRFNPEDIDKIISSKNRSNAGKSAPACGLTLEKVF 246 Query: 246 Y 246 Y Sbjct: 247 Y 247 >gi|289623904|ref|ZP_06456858.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649364|ref|ZP_06480707.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. 2250] gi|298486236|ref|ZP_07004299.1| tRNA pseudouridine synthase A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159243|gb|EFI00301.1| tRNA pseudouridine synthase A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325326|gb|EFW81393.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. B076] gi|320327689|gb|EFW83697.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330869252|gb|EGH03961.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877919|gb|EGH12068.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330891458|gb|EGH24119.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. mori str. 301020] gi|330985608|gb|EGH83711.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 284 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQAERTMKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 131 YNDQIRPAHLNQEITW-NHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ L+++ R+ G A Sbjct: 190 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVQVEY 260 >gi|170767244|ref|ZP_02901697.1| tRNA pseudouridine synthase A [Escherichia albertii TW07627] gi|170123578|gb|EDS92509.1| tRNA pseudouridine synthase A [Escherichia albertii TW07627] Length = 270 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 ALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHHQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 >gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4] Length = 255 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 133/245 (54%), Gaps = 5/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + +EY+GS Y GWQ+Q N ++IQG +E +F + GE + VHG+GRTD+GVHA QVA+F Sbjct: 7 ITLEYDGSRYDGWQKQGNTDNTIQGKLENVLFRMAGEEIEVHGSGRTDAGVHARGQVANF 66 Query: 65 DLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + E P + LN YL D I +L+ IV ++FH+R SA ++Y Y + T Sbjct: 67 HINAEICPDGEAAREYLNRYL--PDDIRVLSAKIVPERFHSRLSATSKTYGYYVETGDKK 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E+ + K LD + MR AA+ L+G HDF +F + S +R ID + G Sbjct: 125 NVFERKYVYGCGKKLDVKAMRQAAEFLIGEHDFKSFCANRRMKKSTVRRIDEIRIVEHGT 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +E FL+ +R G+L VG G +++ + A++R G APPEGL+ Sbjct: 185 KLEFLYTGNGFLYNMVRILTGTLLEVGSGTRRPEKMKEIIAAKNRDMAGRTAPPEGLFLL 244 Query: 243 SVEYS 247 V Y Sbjct: 245 HVGYE 249 >gi|218781331|ref|YP_002432649.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans AK-01] gi|218762715|gb|ACL05181.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans AK-01] Length = 245 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I+EY+G+ Y GWQRQ + +IQ +E A+ +T + VV+GAGRTDSGVHAL VA+F Sbjct: 7 LILEYDGTHYHGWQRQPHDLTIQEVLEGALEKITRQKCVVYGAGRTDSGVHALNYVANFR 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + KALN+ L I ++ FHAR SA+ + Y Y I P A+ Sbjct: 67 CNTHLDAGVFVKALNSTL--PKDIVCKESTLAPDGFHARKSAVSKIYEYHITNGPTPPAV 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + AW + + LD E M AA+ +G HDF+ F ++ +R I + S+ N I Sbjct: 125 CRQYAWHVRRRLDKEAMTRAAKLFLGSHDFSAFEGAGSPKATSVRNIMQSHIQSWENHII 184 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 RV A FL +R+ VG+L +G GK + L + DR + GP APPEGL+ V+ Sbjct: 185 YRVEANGFLRYMVRNIVGTLVYIGMGKIPPEAVMDILASGDRGQAGPTAPPEGLFMMCVK 244 Query: 246 Y 246 Y Sbjct: 245 Y 245 >gi|270157075|ref|ZP_06185732.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968] gi|289164512|ref|YP_003454650.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150] gi|269989100|gb|EEZ95354.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968] gi|288857685|emb|CBJ11528.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150] Length = 262 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 136/250 (54%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q ++Q ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVADLPISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD +R W+ +N++L I + + ++FHAR+SA R Y Y I Sbjct: 61 IHFDSEKQRSIRAWI-----HGVNSFL--PKDICVKWGKELSEEFHARYSATARRYRYVI 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 AL + + LD M AAQ L+G +DFT+FRS+ CQ+++P+R + Sbjct: 114 YNSAIRPALLRSNVTWQYRQLDHRLMHQAAQVLLGENDFTSFRSVECQSNTPMRNVYKLQ 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 VN G+L+ I + A +FLH +R+ G L VG GK +E+ LQA+DR+ AP Sbjct: 174 VNRMGDLVIIDITANAFLHHMVRNIAGVLIAVGSGKRPVFWVEEVLQAKDRRLGAETAPA 233 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 234 YGLYLVQVNY 243 >gi|319787538|ref|YP_004147013.1| tRNA pseudouridine synthase A [Pseudoxanthomonas suwonensis 11-1] gi|317466050|gb|ADV27782.1| tRNA pseudouridine synthase A [Pseudoxanthomonas suwonensis 11-1] Length = 257 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 128/242 (52%), Gaps = 4/242 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+G G+ GWQ S++Q ++E+A+ V + + V AGRTD+GVHA Sbjct: 1 MRYALGVEYDGGGFQGWQGLGPSGPSTVQATLERALSSVADQAITVSCAGRTDAGVHAEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E P L ++ T+ + VD FHARFSA R Y Y ++ R Sbjct: 61 QVVHFDSTAERDPRAW--TLGVTGRLPPTVCVRWCMPVDDAFHARFSARARRYRYTLVNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + LD + M AAQ L+G +DF+ FR++HCQA R + V Sbjct: 119 PVRPALYRSTMAWERRPLDADAMHRAAQALLGENDFSAFRTVHCQAPHARRNLQDIQVRR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I V A +FLH +R+ VGSL VG G + + L +DR GP A P+GL Sbjct: 179 SGETVSIEVQANAFLHHMVRNIVGSLLEVGAGARDEGWIARLLAGRDRTLAGPTAAPQGL 238 Query: 240 YF 241 F Sbjct: 239 VF 240 >gi|293604664|ref|ZP_06687064.1| tRNA pseudouridine synthase A [Achromobacter piechaudii ATCC 43553] gi|292816833|gb|EFF75914.1| tRNA pseudouridine synthase A [Achromobacter piechaudii ATCC 43553] Length = 270 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 138/253 (54%), Gaps = 14/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q + ++Q ++E A+ F + V AGRTD+GVH Sbjct: 2 MSRVALGLAYDGSAWQGWQTQPHRQTVQDTLESALARFCGVQDPVPTICAGRTDTGVHGA 61 Query: 59 RQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 QV H D + WV + +NA+L S +S+ V +FHARFSA R+Y+ Sbjct: 62 MQVVHLDTSLDRRMESWV-----RGVNAFLPPS--VSVQWAQEVSDEFHARFSARARTYV 114 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + + AL GRA ++LD + MR AAQ LVG HDF++FRS CQA P+R + Sbjct: 115 YLLWRGRVRPALWAGRAGWCFQTLDVDAMRAAAQALVGEHDFSSFRSSQCQAKHPVRHMH 174 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 D+ G + + A +FLH +R+ +G+L VG G+ + + + L +DR P Sbjct: 175 RLDIAERGPFLVFTLKANAFLHHMVRNIMGALLQVGQGRESVDWMAQLLSLRDRTRGAPT 234 Query: 234 APPEGLYFDSVEY 246 P+GLY S++Y Sbjct: 235 FAPDGLYLSSIDY 247 >gi|71737567|ref|YP_273899.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558120|gb|AAZ37331.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. phaseolicola 1448A] Length = 274 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERTMKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 120 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVQVEY 250 >gi|262369979|ref|ZP_06063306.1| tRNA-pseudouridine synthase I [Acinetobacter johnsonii SH046] gi|262315018|gb|EEY96058.1| tRNA-pseudouridine synthase I [Acinetobacter johnsonii SH046] Length = 265 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 133/252 (52%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + IE+ G+ Y GWQ Q+ G S+Q +IEK + + E + +HGAGRTD+GVHA Sbjct: 1 MQRFAIGIEFCGTHYRGWQTQQTGVISVQETIEKVLSKIANEPISLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + + ++ ISI + +D+ FHARF A R Y Y Sbjct: 61 MVAHFDSSALRSERGWL-------MGSNSQLPKDISIQWIKAMDQDFHARFKAQARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + +LD M AAQ G H+F +FR+ CQ++ P+R + H Sbjct: 114 VVYNHPQRPALMHKQVTHAYYALDVAKMMQAAQKFEGTHNFESFRAAACQSNQPVRHVSH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + +E A+DRK G A Sbjct: 174 CRLIQHGPYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEVEHIEAIFAAEDRKAAGITA 233 Query: 235 PPEGLYFDSVEY 246 PP+GLYF +Y Sbjct: 234 PPDGLYFIHADY 245 >gi|320101703|ref|YP_004177294.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644] gi|319748985|gb|ADV60745.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644] Length = 275 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 132/249 (53%), Gaps = 7/249 (2%) Query: 1 MIRYC-MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+R +I+ Y+G+ + GWQRQ ++Q +E A+ +TGE V V +GRTD+GVHAL Sbjct: 1 MLRTLKLILAYDGTEFSGWQRQPGHRTVQEVVESALRPLTGEPVAVTASGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAHF + P + KALNA L + ++ + FHA A +S YR + Sbjct: 61 QVAHFHTIARHPPEVFLKALNATLPPD--VRVVWAEEAPQSFHATLDA--QSKRYRYVID 116 Query: 120 QAPLA--LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P A + AW + + LD M A Q L GRHDF +F + S +RTI V Sbjct: 117 NGPFADPFLRRTAWHLFRPLDAPRMNRAVQALRGRHDFRSFETNWPNRMSSVRTILDVQV 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + +E+ V A FL+ +RS G+ LVG G T + + L AQDR+ GP APP+ Sbjct: 177 RRIDHRVELEVEADGFLYNMVRSIAGTAVLVGLGDRPETFVAEVLHAQDRRLAGPTAPPQ 236 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 237 GLFLLQVRY 245 >gi|59802129|ref|YP_208841.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA 1090] gi|62901142|sp|Q5F5V8|TRUA_NEIG1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|59719024|gb|AAW90429.1| putative tRNA pseudouridine synthase [Neisseria gonorrhoeae FA 1090] Length = 265 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 68 VHFDTAAVRPAQAWIRGVNAHLP--EGIAVLHARQVAPGFHARFDASGRHYRYLLESAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 126 RSPLLKNRAGWTHLELDIGPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRADLTQSA 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 GLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLYL 245 Query: 242 DSVEY 246 V+Y Sbjct: 246 TGVDY 250 >gi|70729445|ref|YP_259183.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf-5] gi|68343744|gb|AAY91350.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf-5] Length = 274 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 100/251 (39%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G S+Q ++EKA+ V VVV AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVPSVQETLEKALSRVADSPVVVSCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + IS+ + FHARF AI R Y Y I Sbjct: 68 VHFDTQAVRSMKAWV-------MGANINLPHDISVSWAKEMPAHFHARFKAIARRYRYVI 120 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA LVG HDF+ FR+ CQA SPI+ I H Sbjct: 121 YNDQIRPAHLNEEITW-NHRPLDIERMAQAAAFLVGTHDFSAFRAGQCQAKSPIKEIHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I + + A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 180 RVTRHGKMIVLDIRASAFLHHMVRNIAGVLMTIGAGERPVEWAREVLESRIRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PFGLYLVQVEY 250 >gi|257487527|ref|ZP_05641568.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012647|gb|EGH92703.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 284 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD E WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQAERTTKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 131 YNDQIRPAHLNQEITW-NHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ L+++ R+ G A Sbjct: 190 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVQVEY 260 >gi|190150230|ref|YP_001968755.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263568|ref|ZP_07545183.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692338|sp|B3GXP8|TRUA_ACTP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189915361|gb|ACE61613.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871211|gb|EFN02940.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 262 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ ++ W C NA L D I++ V + FHARFSA R Y Y I Sbjct: 61 VHFETQAIRPLQSW-----CFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 K R+ ++PK LD + M A Q L+G +DF++FR+ CQ+ +P Sbjct: 114 FN-------NKLRSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + H +V+ GN I + + A +F+H +R+ VGSL VG G+ ++ L +DR Sbjct: 167 RNVHHLNVSRLGNYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 227 AAPTAKAEGLYLVDVHY 243 >gi|303251239|ref|ZP_07337417.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252529|ref|ZP_07534425.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261387|ref|ZP_07543062.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302649781|gb|EFL79959.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860121|gb|EFM92138.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869118|gb|EFN00920.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 262 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ ++ W C NA L D I++ V + FHARFSA R Y Y I Sbjct: 61 VHFETQAIRPLQSW-----CFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 K R+ ++PK LD + M A Q L+G +DF++FR+ CQ+ +P Sbjct: 114 FN-------NKLRSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + H +V+ GN I + + A +F+H +R+ VGSL VG G+ ++ L +DR Sbjct: 167 RNVHHLNVSRLGNYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 227 AAPTAKAEGLYLVDVHY 243 >gi|307245766|ref|ZP_07527852.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254739|ref|ZP_07536566.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259179|ref|ZP_07540909.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853468|gb|EFM85687.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862265|gb|EFM94232.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866846|gb|EFM98704.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 262 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ ++ W C NA L D I++ V + FHARFSA R Y Y I Sbjct: 61 VHFETQAIRPLQSW-----CFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 K R+ ++PK LD + M A Q L+G +DF++FR+ CQ+ +P Sbjct: 114 FN-------NKLRSAILPKGISHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + H +V+ GN I + + A +F+H +R+ VGSL VG G+ ++ L +DR Sbjct: 167 RNVHHLNVSRLGNYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 227 AAPTAKAEGLYLVDVHY 243 >gi|46143880|ref|ZP_00204588.1| COG0101: Pseudouridylate synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 262 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ ++ W C NA L D I++ V + FHARFSA R Y Y I Sbjct: 61 VHFETQAIRPLQSW-----CFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 K R+ ++PK LD + M A Q L+G +DF++FR+ CQ+ +P Sbjct: 114 FN-------NKLRSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + H +V+ GN I + + A +F+H +R+ VGSL VG G+ ++ L +DR Sbjct: 167 RNVHHLNVSRLGNYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 227 AAPTAKAEGLYLVDVHY 243 >gi|226951929|ref|ZP_03822393.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ATCC 27244] gi|294649190|ref|ZP_06726629.1| tRNA pseudouridine synthase A [Acinetobacter haemolyticus ATCC 19194] gi|226837469|gb|EEH69852.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ATCC 27244] gi|292824908|gb|EFF83672.1| tRNA pseudouridine synthase A [Acinetobacter haemolyticus ATCC 19194] Length = 265 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G+ Y GWQ Q+ G +S+Q +IEK + + +++HGAGRTD+GVHA Sbjct: 1 MQRYAIGIEFCGTQYRGWQTQQAGVASVQETIEKVLSTIADHPIILHGAGRTDAGVHATN 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + ++ IS+ + +D+ FHARF A R Y Y Sbjct: 61 MVAHFDTTAIRPDRGWL-------MGTNSQLPKDISLQWIKRMDESFHARFKARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + + ++LD + M AA G H+F TFR+ CQ++ P+R + H Sbjct: 114 IVYNAPTRPALLYKQVTHLYQTLDVQKMIAAAAKFEGTHNFETFRAAACQSNQPVRHVKH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + ++ AQDRK G A Sbjct: 174 CRLFEHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDHMFAAQDRKAAGITA 233 Query: 235 PPEGLYFDSVEY 246 P +GLYF EY Sbjct: 234 PADGLYFIQAEY 245 >gi|145641169|ref|ZP_01796749.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] gi|145274006|gb|EDK13872.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.4-21] Length = 269 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNVIRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|251788988|ref|YP_003003709.1| tRNA pseudouridine synthase A [Dickeya zeae Ech1591] gi|247537609|gb|ACT06230.1| tRNA pseudouridine synthase A [Dickeya zeae Ech1591] Length = 276 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 135/247 (54%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+QG +E A+ V + V AGRTD+GVHA QV Sbjct: 13 LKIALGIEYDGSRYYGWQRQAEVDSVQGCLEAALSQVANARIDVFCAGRTDAGVHATGQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 HF +NA L I++ + VD+ FHARFSA R Y Y I R+ Sbjct: 73 VHFTTHAVRKDAAWTMGVNANLPPD--IAVRWVKTVDEAFHARFSATARRYRYVIYNRRF 130 Query: 121 APLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L +G + +P LD E M A Q L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 131 RPAILSQGVTHYYLP--LDAERMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVTR 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + + A +F+H +R+ VGSL +G G + + L A+DR A +GL Sbjct: 189 LGDYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPENWMAELLAAKDRTLAAATAKADGL 248 Query: 240 YFDSVEY 246 Y +V+Y Sbjct: 249 YLVAVDY 255 >gi|297538368|ref|YP_003674137.1| tRNA pseudouridine synthase A [Methylotenera sp. 301] gi|297257715|gb|ADI29560.1| tRNA pseudouridine synthase A [Methylotenera sp. 301] Length = 272 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GWQ Q NG +Q ++E AI + V VH AGRTD+GVHA QV Sbjct: 1 MRISLCLAYDGANFCGWQSQSNGGGVQDALELAISSIAQHQVRVHAAGRTDTGVHARCQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L +T+ + VD+ FHARFSA RSY Y + Sbjct: 61 VHFDTTSIRPLTAWVRGVNAHLP--ETVRVEWAHEVDEDFHARFSAFSRSYQYLLYNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +A L+ E M AA +LVG HDF+ FR+ CQA + R + +V G Sbjct: 119 APALMATKAGWFHLPLNGEAMSEAASYLVGEHDFSGFRASECQAKTATRNMIKSEVKVAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FL Q+R+ +G+L +G G + +++ LQ +DR P P GLY Sbjct: 179 KYFIFEFSANAFLQHQVRNMIGALVYIGKGAYPPIYMKELLQKRDRTLSPPTFSPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|78485146|ref|YP_391071.1| tRNA pseudouridine synthase A [Thiomicrospira crunogena XCL-2] gi|123741632|sp|Q31HH6|TRUA_THICR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78363432|gb|ABB41397.1| tRNA pseudouridine synthase A [Thiomicrospira crunogena XCL-2] Length = 262 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY G+ Y GWQ QK+ S+Q +EKA+ + E + ++ AGRTD+GVHA+ Q+AHF+ Sbjct: 8 IEYQGTAYCGWQHQKHCDSVQQQLEKALSYIADEPIGLNCAGRTDTGVHAIGQIAHFETN 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + +N ++ + I + + + + FHARFSA+ R Y Y I R A+ Sbjct: 68 ASRPDKAWIQGVNT--QLPNDIRVTWVKPMPEDFHARFSAVARQYRYVIFNRPVHSAILA 125 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 R + LD + M AAQ L+G +DF++FR+ CQAS R + + V+ GN + + Sbjct: 126 NRVTWENRPLDVKKMHAAAQDLLGENDFSSFRAAGCQASHANRNVQYLQVSRQGNFVFVD 185 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +FLH +R+ VG+L VG + + L+ QDR + G AP GLYF + Y Sbjct: 186 IQANAFLHHMVRNIVGTLLEVGRLDKPVEWVSELLKKQDRTQAGMTAPAAGLYFVNALY 244 >gi|312877809|ref|ZP_07737759.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus 6A] gi|311795435|gb|EFR11814.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus 6A] Length = 244 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 135/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q A+F Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQKANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALN+ L IS+ + V F AR+SA +++Y Y I +++ AL Sbjct: 66 TNSKIPTDKFPLALNSVL--PGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + I Sbjct: 124 LRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFENECIA 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY V Sbjct: 184 IYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLVIESKDRTKAGKTLPPWGLYLVDVV 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|283786396|ref|YP_003366261.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168] gi|282949850|emb|CBG89473.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168] Length = 269 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 +EY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 15 VEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETS 74 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V + FHARFSA R Y Y I R P L Sbjct: 75 ALRKDAAWTLGVNANL--PGDIAVRWVKAVPEDFHARFSATARRYRYIIYNHRLRPAVLA 132 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ G + + Sbjct: 133 KGVTHYY-EPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRHGAYVVV 191 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 192 DIKANAFVHHMVRNIVGSLMEVGAHHQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 251 >gi|260584448|ref|ZP_05852195.1| tRNA pseudouridine synthase A [Granulicatella elegans ATCC 700633] gi|260157966|gb|EEW93035.1| tRNA pseudouridine synthase A [Granulicatella elegans ATCC 700633] Length = 250 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY +I+ Y+G+ Y G+Q Q+NG+SIQ + KA+ +T G + V G+GRTDSGVHA QV Sbjct: 4 RYKVILSYDGTNYVGFQVQENGNSIQAELNKALRKMTKGLYIPVCGSGRTDSGVHANGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + L +ALN+ L D IS + V +FHAR+S + Y+YR+ ++ Sbjct: 64 IHFDYPTKIEEENLQRALNSLL--PDDISAKQVMAVSDEFHARYSVTGKRYIYRVNIQKF 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + P ++ +NM A Q ++G HDFT+F S S +R + +V Sbjct: 122 VNPFSRLYTLHHPYRVNVDNMNEALQAVIGEHDFTSFCSTKTDKESKVRIVTKAEVVEKD 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + FL+ IR VG+ +GDG +D+ L A DR++ GP APP+GLY Sbjct: 182 GELVFTFEGNGFLYNMIRILVGTSLQIGDGLRPVSDMRDILVAMDRQKAGPTAPPQGLYL 241 Query: 242 DSVEYS 247 D V Y Sbjct: 242 DEVFYE 247 >gi|126208378|ref|YP_001053603.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae L20] gi|166228675|sp|A3N0R2|TRUA_ACTP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126097170|gb|ABN73998.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 262 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 137/257 (53%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ ++ W C NA L D I++ V + FHARFSA R Y Y I Sbjct: 61 VHFETQAIRPLQSW-----CFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 K R+ ++PK +LD + M +A Q L+G +DF++FR+ CQ+ +P Sbjct: 114 FN-------NKLRSAILPKGVSHYHYALDHQKMHVAGQFLLGENDFSSFRAAKCQSHTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + H +V+ GN I + + A +F+H +R+ V SL VG G+ ++ L +DR Sbjct: 167 RNVHHLNVSRLGNYIVVDIQANAFVHHMVRNIVESLIEVGQGRQPVEWIQWLLAQRDRTL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 227 AAPTAKAEGLYLVDVHY 243 >gi|329297440|ref|ZP_08254776.1| tRNA pseudouridine synthase A [Plautia stali symbiont] Length = 270 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 130/246 (52%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 8 FKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVANHPVNVFCAGRTDAGVHGTGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ +N+ + D I++ + V + FHARFSA R Y Y I R Sbjct: 68 VHFETTLSRADSAWTLGVNS--NLPDDIAVRWVKAVPETFHARFSATARRYRYVIYNQRL 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L KG LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 126 RPAILGKGITHFY-HPLDAEKMHRAAQALLGENDFTSFRAVQCQSRTPWRNVMHLYVTRQ 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A +F+H +R+ VGSL +G G T + L A+DR A EGLY Sbjct: 185 GPYVIVDIKANAFVHYMVRNIVGSLLEIGCGNQPETWMATLLAAKDRTLAAATAKAEGLY 244 Query: 241 FDSVEY 246 +V+Y Sbjct: 245 LVAVDY 250 >gi|226949212|ref|YP_002804303.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] gi|226843950|gb|ACO86616.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] Length = 246 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 137/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+T E + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTREDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILTAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|187933357|ref|YP_001884507.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund 17B] gi|238691608|sp|B2TIK9|TRUA_CLOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187721510|gb|ACD22731.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund 17B] Length = 244 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIE++G+ + GWQRQ ++QG +EKAI +TGE + +G+ RTD GVHA VA+F Sbjct: 6 LIIEFDGTNFCGWQRQIKDRTVQGCLEKAILKITGEKSLTNGSSRTDGGVHAKAMVANF- 64 Query: 66 LVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +P +ALN K+ D I+++ VD FHAR+S+ + Y Y I+ R L+ Sbjct: 65 ITNSSIPGEKFREALNT--KLPDDIAVIKSEEVDMDFHARYSSKGKMYSYTIVNRYEKLS 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 K + K L+ E+M+ A + +G+HDF F S A + +RTI F + ++I Sbjct: 123 FGKQYVHHVRKELNVEDMKKACECFIGKHDFKAFMSPGSSAKTTVRTIQEFYIEKNEDVI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + A FL+ +R VG+L +G GK D++ + RK G PP GL + V Sbjct: 183 KIFISADGFLYNMVRIIVGTLINIGTGKTKLEDVDNIINDGIRKRSGMCVPPNGLVLEKV 242 Query: 245 EY 246 Y Sbjct: 243 FY 244 >gi|330446609|ref|ZP_08310261.1| tRNA pseudouridine synthase A [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490800|dbj|GAA04758.1| tRNA pseudouridine synthase A [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 261 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + + V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPIEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V NA L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFDVNIDRKMVAWTMGANANL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H V G Sbjct: 119 RPAILGTGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L+ +DR G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEEKPEWIKWLLEQKDRTLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|312793879|ref|YP_004026802.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181019|gb|ADQ41189.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kristjanssonii 177R1B] Length = 244 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 135/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q A+F Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQKANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALN+ L ISI + V F AR+SA +++Y Y I +++ AL Sbjct: 66 TNSKIPTDKFPLALNSVL--PGDISIKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + I Sbjct: 124 LRNYAYHYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFENECIA 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY V Sbjct: 184 IYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLVIESKDRTKAGKTLPPWGLYLVDVV 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|330952706|gb|EGH52966.1| tRNA pseudouridine synthase A [Pseudomonas syringae Cit 7] Length = 274 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERTMKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 120 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVGVEY 250 >gi|238897977|ref|YP_002923657.1| pseudouridylate synthase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465735|gb|ACQ67509.1| pseudouridylate synthase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 277 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 139/244 (56%), Gaps = 11/244 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--D 65 IEYNG Y+GWQRQ++ SIQ +E A+ + E + V AGRTD+GVHA QV HF Sbjct: 21 IEYNGYRYYGWQRQEHVPSIQSCLEHALSKIANESITVCCAGRTDAGVHATAQVVHFLTK 80 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLA 124 VR+ V I+ +N YL I++ V+K FHARFSA R Y Y I R P Sbjct: 81 AVRKEVSWIM--GVNTYL--PPDITVRWAKKVEKDFHARFSATARRYRYLIFNDRHRPAL 136 Query: 125 LEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-N 182 +G A + +P LD + M AAQ ++G +DF++FR+ CQ+ +P R + H V+ FG + Sbjct: 137 FSEGLAHYSMP--LDEKKMERAAQCVLGENDFSSFRAAQCQSKTPWRYVHHLKVSRFGMH 194 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +FLH +R+ VGSL VG G+ + + L +DR + A GLY Sbjct: 195 YIMVDIKANAFLHHMVRNIVGSLIEVGIGRQNEHWIAQLLALKDRTQAAVTAKASGLYLV 254 Query: 243 SVEY 246 SV+Y Sbjct: 255 SVDY 258 >gi|330901134|gb|EGH32553.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 284 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQAERTLKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 131 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 190 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVGVEY 260 >gi|289671992|ref|ZP_06492882.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae FF5] gi|330975198|gb|EGH75264.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 274 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERTLKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 120 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVGVEY 250 >gi|89073216|ref|ZP_01159746.1| tRNA pseudouridine synthase A [Photobacterium sp. SKA34] gi|89050926|gb|EAR56390.1| tRNA pseudouridine synthase A [Photobacterium sp. SKA34] Length = 261 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF++ + V NA+L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFEINIDRKIVAWTMGANAHL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPAILGNGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAMHCQSRSPWRNLIHLNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ +E L ++R G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEEKPEWIEWLLAQKNRTLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|330943525|gb|EGH45866.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. pisi str. 1704B] Length = 284 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQAERTLKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 131 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 190 RVTHHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVGVEY 260 >gi|66044907|ref|YP_234748.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae B728a] gi|63255614|gb|AAY36710.1| tRNA pseudouridine synthase [Pseudomonas syringae pv. syringae B728a] Length = 284 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQAERSMKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 131 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 190 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPIEWAREVLESRIRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVGVEY 260 >gi|330973842|gb|EGH73908.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 274 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERSMKAWV-------MGANINLPHDVSVTWARVMPATFHARFKAIARRYRYVI 120 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SP++ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPIEWAREVLESRIRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVGVEY 250 >gi|332970004|gb|EGK09003.1| tRNA pseudouridine synthase A [Psychrobacter sp. 1501(2011)] Length = 314 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 132/249 (53%), Gaps = 12/249 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + IE+NGS Y GWQRQ+ +Q +E+ + + E + V AGRTD+GVH +AH Sbjct: 52 YALGIEFNGSNYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDAGVHGGNMLAH 111 Query: 64 FDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 F V W+ + N+ L D I+I + + FHARF AI R Y Y + Sbjct: 112 FKTSANRGVYNWL-----RGANSLLP--DDIAIRWIQPMPDDFHARFGAIARRYRYITLN 164 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + A+ I + LD M+ AA H+VG+HDF++FR+ CQ++ P+R I H + Sbjct: 165 QPQRPAVLNHLVTHIHEPLDLAKMQQAAAHIVGQHDFSSFRAAACQSNQPVRNIHHAKLF 224 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I + A FLH +R+ +G+L +G G+ D + L+A+DR P A P+G Sbjct: 225 QHGQFIVFDIQADGFLHHMVRNLMGTLFAIGKGELQPMDYLRILEAKDRTIAPPTASPDG 284 Query: 239 LYFDSVEYS 247 LYF + Y Sbjct: 285 LYFINAYYP 293 >gi|302871559|ref|YP_003840195.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis OB47] gi|302574418|gb|ADL42209.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis OB47] Length = 244 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 135/245 (55%), Gaps = 10/245 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q A+F Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQKANFK 65 Query: 66 ----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + P+ L L + + D I V F AR+SA +++Y Y I +++ Sbjct: 66 TSSKIPTDKFPLALNSVLPGDISVKDAIE------VSLDFSARYSAKQKTYKYLIYNKKS 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + A+ P LD + M+ A ++ +G +DF +F S+ ++ + +R I + + Sbjct: 120 RPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSVDSESKTTVRRIYNAYLTFEN 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ R G++ VG GK D+ ++++DR G PP GLY Sbjct: 180 ECIAIYLTANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGKTLPPWGLYL 239 Query: 242 DSVEY 246 V Y Sbjct: 240 VDVAY 244 >gi|157144741|ref|YP_001452060.1| tRNA pseudouridine synthase A [Citrobacter koseri ATCC BAA-895] gi|166228694|sp|A8ADR1|TRUA_CITK8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157081946|gb|ABV11624.1| hypothetical protein CKO_00468 [Citrobacter koseri ATCC BAA-895] Length = 270 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V + FHARFSA R Y Y I R P L Sbjct: 76 ALRKDAAWTLGVNANL--PGDIAVRWVKAVPEDFHARFSATARRYRYIIYNHRLRPAILG 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 G + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 HGVTHFY-EPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVTRHGAYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR+ A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRRLSAATAKAEGLYLVAVDY 252 >gi|237800363|ref|ZP_04588824.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023220|gb|EGI03277.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 284 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 132/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD + E WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTLAERSLKAWV-------MGANINLPHDVSVTWARVMPANFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA+ LVG HDF+ FR+ CQA SP++ + H Sbjct: 131 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEFLVGTHDFSAFRAGQCQAKSPVKQLHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ L+++ R+ G A Sbjct: 190 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVQVEY 260 >gi|253579808|ref|ZP_04857076.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848807|gb|EES76769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 246 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG ++QG + + + GE + GA RTD+GVHA+ Sbjct: 1 MKRIGLVVAYDGTNYCGWQTQPNGITVQGVLNDTLSELLGEKIETIGASRTDAGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN ++ + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTNTRIPGEKISYALNQ--RLPEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + LD + M+ A +L+G+HDF +F Q + IRT+ DV Sbjct: 119 FPVPTERLYTYFYHYKLDVDKMKAATSYLIGQHDFASFCGAKAQVKTTIRTVTGIDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++ L+A +R+ GP AP +GL Sbjct: 179 GDIVTIRVTGTGFLYNMVRIISGTLIEVGNGQYPPERVKTILEACNREMAGPTAPAQGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|303252899|ref|ZP_07339058.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247890|ref|ZP_07529926.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648329|gb|EFL78526.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855692|gb|EFM87859.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 262 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 136/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ ++ W C NA L D I++ V + FHARFSA R Y Y I Sbjct: 61 VHFETQAIRPLQSW-----CFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 K R+ ++PK LD + M A Q L+G +DF++FR+ CQ+ +P Sbjct: 114 FN-------NKPRSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + + +V+ GN I + + A +F+H +R+ VGSL VG G+ ++ L +DR Sbjct: 167 RNVHYLNVSRLGNYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 227 AAPTAKAEGLYLVDVHY 243 >gi|302060553|ref|ZP_07252094.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato K40] Length = 284 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 78 VHFDTQAERSLKAWV-------MGANINLPHDVSVSWARVMPATFHARFKAIARRYRYVI 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H Sbjct: 131 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ L+++ R+ G A Sbjct: 190 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVQVEY 260 >gi|162533082|ref|YP_001621406.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str. DC3000] gi|213971672|ref|ZP_03399779.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1] gi|301386519|ref|ZP_07234937.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato Max13] gi|302134665|ref|ZP_07260655.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|118201619|gb|ABK79682.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str. DC3000] gi|213923557|gb|EEB57145.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1] gi|331019139|gb|EGH99195.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 274 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERSLKAWV-------MGANINLPHDVSVSWARVMPATFHARFKAIARRYRYVI 120 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVQVEY 250 >gi|226327923|ref|ZP_03803441.1| hypothetical protein PROPEN_01804 [Proteus penneri ATCC 35198] gi|225203627|gb|EEG85981.1| hypothetical protein PROPEN_01804 [Proteus penneri ATCC 35198] Length = 294 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 I+ + +EY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 26 IKIALGVEYDGSRYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ +N +L I++ + V FHARFSA R Y Y I R Sbjct: 86 VHFETTAHRKDPAWTMGVNTHLPAD--IAVRWVKTVADDFHARFSATARRYRYVIFNHRY 143 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ + Sbjct: 144 RPAILSSGVTHF-HYPLDAERMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVSRY 202 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 203 GDYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDITWMAELLALKDRTKAAATAKANGLY 262 Query: 241 FDSVEY 246 SV+Y Sbjct: 263 LVSVDY 268 >gi|330878235|gb|EGH12384.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 274 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERSLKAWV-------MGANINLPHDVSVSWAKVMPATFHARFKAIARRYRYVI 120 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVQVEY 250 >gi|16761293|ref|NP_456910.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141011|ref|NP_804353.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412735|ref|YP_149810.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180940|ref|YP_217357.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612896|ref|YP_001586861.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549625|ref|ZP_02343384.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168229744|ref|ZP_02654802.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237394|ref|ZP_02662452.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242494|ref|ZP_02667426.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465920|ref|ZP_02699790.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817894|ref|ZP_02829894.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443793|ref|YP_002041632.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450234|ref|YP_002046424.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471784|ref|ZP_03077768.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734499|ref|YP_002115439.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248953|ref|YP_002147329.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361669|ref|YP_002141305.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245997|ref|YP_002216441.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388490|ref|ZP_03215102.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929209|ref|ZP_03220352.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353481|ref|YP_002227282.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857786|ref|YP_002244437.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022210|ref|ZP_03336657.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161334|ref|ZP_03347044.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426977|ref|ZP_03359727.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646800|ref|ZP_03376853.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852689|ref|ZP_03382221.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583142|ref|YP_002636940.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912353|ref|ZP_04656190.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289827487|ref|ZP_06546099.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|24212558|sp|Q8Z500|TRUA_SALTI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901206|sp|Q5PCV6|TRUA_SALPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81309634|sp|Q57LY6|TRUA_SALCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030141|sp|A9N476|TRUA_SALPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689938|sp|B5BCH8|TRUA_SALPK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690009|sp|B5EZQ2|TRUA_SALA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690247|sp|B4TBN7|TRUA_SALHS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690344|sp|B5FPL2|TRUA_SALDC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690447|sp|B5R349|TRUA_SALEP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690504|sp|B5RCJ3|TRUA_SALG2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238693568|sp|B4SZP0|TRUA_SALNS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238693647|sp|B4TQA4|TRUA_SALSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764863|sp|C0PZZ5|TRUA_SALPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25292042|pir||AF0802 pseudouridylate synthase (EC 4.2.1.70) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503592|emb|CAD07600.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi] gi|29136636|gb|AAO68202.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126992|gb|AAV76498.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128573|gb|AAX66276.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362260|gb|ABX66028.1| hypothetical protein SPAB_00602 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402456|gb|ACF62678.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408538|gb|ACF68757.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458148|gb|EDX46987.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710001|gb|ACF89222.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631471|gb|EDX50031.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093145|emb|CAR58589.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212656|gb|ACH50053.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289616|gb|EDY28979.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940513|gb|ACH77846.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605588|gb|EDZ04133.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321753|gb|EDZ06952.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273262|emb|CAR38227.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325206|gb|EDZ13045.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335762|gb|EDZ22526.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338670|gb|EDZ25434.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344778|gb|EDZ31542.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709589|emb|CAR33934.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467669|gb|ACN45499.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320086803|emb|CBY96575.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322617114|gb|EFY14020.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617581|gb|EFY14480.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624790|gb|EFY21619.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630340|gb|EFY27110.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634520|gb|EFY31253.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639231|gb|EFY35923.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640094|gb|EFY36761.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645687|gb|EFY42211.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652051|gb|EFY48414.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656223|gb|EFY52520.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659375|gb|EFY55622.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665835|gb|EFY62018.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669927|gb|EFY66068.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673912|gb|EFY70009.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678671|gb|EFY74727.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683535|gb|EFY79549.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687610|gb|EFY83580.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715420|gb|EFZ06991.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193556|gb|EFZ78761.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198463|gb|EFZ83565.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204575|gb|EFZ89578.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208487|gb|EFZ93426.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213625|gb|EFZ98414.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218340|gb|EGA03050.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220106|gb|EGA04572.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224520|gb|EGA08802.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232335|gb|EGA16438.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235632|gb|EGA19716.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241209|gb|EGA25245.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244951|gb|EGA28953.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250070|gb|EGA33964.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253854|gb|EGA37679.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254991|gb|EGA38782.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259823|gb|EGA43455.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264157|gb|EGA47664.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270855|gb|EGA54293.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624193|gb|EGE30538.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628574|gb|EGE34917.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 270 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 ALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLA 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHYY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDY 252 >gi|16765695|ref|NP_461310.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993057|ref|ZP_02574152.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168261608|ref|ZP_02683581.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263425|ref|ZP_03163499.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|24212561|sp|Q8ZNB9|TRUA_SALTY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16420911|gb|AAL21269.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241680|gb|EDY24300.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328800|gb|EDZ15564.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205349584|gb|EDZ36215.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247574|emb|CBG25401.1| Pseudouridine synthase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994470|gb|ACY89355.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158926|emb|CBW18439.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913359|dbj|BAJ37333.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222930|gb|EFX48001.1| tRNA pseudouridine synthase A ; tRNA Psi38, Psi39 and Psi40 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130701|gb|ADX18131.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989301|gb|AEF08284.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 270 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 ALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLA 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHYY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDY 252 >gi|312135434|ref|YP_004002772.1| tRNA pseudouridine synthase a [Caldicellulosiruptor owensensis OL] gi|311775485|gb|ADQ04972.1| tRNA pseudouridine synthase A [Caldicellulosiruptor owensensis OL] Length = 244 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 134/241 (55%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q A+F Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQKANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALN+ L IS+ + V F AR+SA +++Y Y I +++ AL Sbjct: 66 TSSKIPTDKFPLALNSVL--PGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A+ P LD + M+ A ++ +G +DF +F S +A + IR I + + I Sbjct: 124 LRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRHIYNAYLTFENECIA 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A FL+ R G++ VG GK D+ ++++DR G PP GLY V Sbjct: 184 IYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGKTLPPWGLYLVDVV 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|262276338|ref|ZP_06054147.1| tRNA pseudouridine synthase A [Grimontia hollisae CIP 101886] gi|262220146|gb|EEY71462.1| tRNA pseudouridine synthase A [Grimontia hollisae CIP 101886] Length = 264 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 138/252 (54%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS ++GWQRQ+ S+Q +EKA+ + + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGSQFYGWQRQREVPSVQEHLEKALSKIANQPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD+ +R W +N +L DTI++ V +FHARFSA R Y Y I Sbjct: 61 VHFDIEGSRPLRAW-----TMGVNTHL--PDTIAVRWAKEVPDEFHARFSATARRYRY-I 112 Query: 117 ITRQA--PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I A P L G + LD M A Q+L+G +DFT+FR++ CQ+ SP R + H Sbjct: 113 IYNHALRPGILRHGVS-HYHGELDETLMHEAGQYLLGENDFTSFRAVQCQSKSPWRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G + I + A +F+H +R+ GSL +VG + ++ L+A+DR A Sbjct: 172 INVTRQGRFVIIDIKANAFVHHMVRNITGSLIVVGRKEQKPEWIKWLLEAKDRNLAAATA 231 Query: 235 PPEGLYFDSVEY 246 EGLY VEY Sbjct: 232 KAEGLYLVEVEY 243 >gi|293390012|ref|ZP_06634346.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950546|gb|EFE00665.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D7S-1] Length = 261 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 138/252 (54%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQRQ+ +SIQ +E+AI ++ E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKHYFGWQRQEKVASIQAELERAISVIANEDIGIFCAGRTDSGVHAAGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L D I++ +V+ FHARFSA R Y Y Sbjct: 61 IHFETTAQRPEKAWSFGVNANL--PDDIAVRWAKVVEDDFHARFSATARRYRYI------ 112 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 L K R+ ++P+ LD + M A Q L+G +DF++FR+ CQ+++P R + H Sbjct: 113 -LYCNKLRSAILPQGVTHCHLELDHQLMHDAGQALLGENDFSSFRAAQCQSNTPWRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V G I + + A +F+H +R+ VGSL VG ++ L+ +DR P A Sbjct: 172 LNVTRQGQYIIVDIQANAFVHHMVRNIVGSLIEVGCCNQPVEWMKWLLEQKDRALAAPTA 231 Query: 235 PPEGLYFDSVEY 246 PEGLY +V Y Sbjct: 232 KPEGLYLVNVIY 243 >gi|222529670|ref|YP_002573552.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM 6725] gi|254789602|sp|B9MKC1|TRUA_ANATD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222456517|gb|ACM60779.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM 6725] Length = 244 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 134/241 (55%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q A+F Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQKANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALN+ L ISI + F AR+SA +++Y Y I +++ AL Sbjct: 66 TSSKIPTDKFPLALNSVL--PGDISIKDAVEAPLDFSARYSARQKTYKYLIYNKKSRPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + I Sbjct: 124 LRNYAYYYPYQLDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFENECIA 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY V Sbjct: 184 IYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLYLVDVV 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|163857158|ref|YP_001631456.1| tRNA pseudouridine synthase A [Bordetella petrii DSM 12804] gi|229557953|sp|A9IRL0|TRUA_BORPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163260886|emb|CAP43188.1| pseudouridylate synthase I [Bordetella petrii] Length = 268 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVHA 57 M R + + Y+GS + GWQ Q + ++Q ++E A+ + G + V AGRTD+GVHA Sbjct: 1 MPRMALGLAYDGSSWQGWQTQPHRQTVQDTLEAALARFAGIDGSLPTV-CAGRTDTGVHA 59 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV H D E + +NA+L S I++ V FHARFSA R+YLY + Sbjct: 60 AMQVVHLDTRLERRAESWVRGVNAFLPPS--IAVQWAQPVPDDFHARFSARSRTYLYLLW 117 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + L GRA + LD + MR AA L+G HDF++FRS CQA P+RT+ D+ Sbjct: 118 RGRVRPPLWAGRAGWCFQPLDVQAMRQAASALLGEHDFSSFRSSQCQARHPVRTLHRLDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + + A +FLH +R+ +G+L +G G+ + L A+DR+ P + Sbjct: 178 DERGPFLVFTLRANAFLHHMVRNLMGALLQIGQGRQPVAWMPAVLAARDRRLAAPTFAAD 237 Query: 238 GLYFDSVEY 246 GLY ++EY Sbjct: 238 GLYLSAIEY 246 >gi|302038272|ref|YP_003798594.1| tRNA pseudouridine synthase A [Candidatus Nitrospira defluvii] gi|300606336|emb|CBK42669.1| tRNA pseudouridine synthase A [Candidatus Nitrospira defluvii] Length = 253 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 139/252 (55%), Gaps = 12/252 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++EY+G+ Y GWQRQ N +IQ ++E+A+ + + + GAGRTD+GVHA Q Sbjct: 1 MTTFKLVLEYDGTQYAGWQRQPNAPTIQAAVEEALAAIAQTRLTIIGAGRTDAGVHAFGQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 VA F REW+ +ALNA+L IS L++ V FHAR+SA + Y Y Sbjct: 61 VASFRTDRGLSQREWL-----RALNAHLPAD--ISALSVKAVPDHFHARYSANGKLYEYH 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ R L + RAW++ K LD M AA +L G HDF++F + +P + Sbjct: 114 LMNRSERAPLLRERAWMLYKPLDFAAMTEAAAYLTGSHDFSSFETAPTDNENPQCRLQRA 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D+ G+LI + A FL +RS VG+L VG GK T+ D+ L A+ R G AP Sbjct: 174 DLRRQGDLIILSFYADRFLKQMVRSMVGTLVEVGQGKRTAADMRTVLAARARAAAGRTAP 233 Query: 236 PEGLYFDSVEYS 247 GLY V+Y+ Sbjct: 234 AHGLYLVRVDYT 245 >gi|268590477|ref|ZP_06124698.1| tRNA pseudouridine synthase A [Providencia rettgeri DSM 1131] gi|291314156|gb|EFE54609.1| tRNA pseudouridine synthase A [Providencia rettgeri DSM 1131] Length = 271 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 134/247 (54%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + R + IEYNGS YFGWQRQ+ S+QG +E+A+ + E + V AGRTD+GVHA Q Sbjct: 7 LYRIALGIEYNGSRYFGWQRQQEVKSVQGCLEEALSKIAAEPISVFCAGRTDAGVHATGQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-R 119 V HF+ N +L I++ V ++FHARFSA R Y Y I R Sbjct: 67 VVHFETSAIRKEAAWTMGANTHL--PPDIAVRWCKPVAEEFHARFSATARRYRYVIFNHR 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L G LD + M AAQ L+G DFT+FR++ CQ+ SP R + H +V+ Sbjct: 125 YRPAILSSGVTHF-HYPLDEKRMHEAAQALLGERDFTSFRAVQCQSKSPWRNVMHVNVSR 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + + A +F+H +R+ VGSL +G G + L+ +DR + A EGL Sbjct: 184 HGHYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQNIDWMAHLLELKDRTKAAATAKAEGL 243 Query: 240 YFDSVEY 246 Y SV+Y Sbjct: 244 YLVSVDY 250 >gi|52078642|ref|YP_077433.1| tRNA pseudouridine synthase A [Bacillus licheniformis ATCC 14580] gi|52784004|ref|YP_089833.1| tRNA pseudouridine synthase A [Bacillus licheniformis ATCC 14580] gi|319649083|ref|ZP_08003291.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2] gi|62901269|sp|Q65P74|TRUA_BACLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52001853|gb|AAU21795.1| pseudouridylate synthase I [Bacillus licheniformis ATCC 14580] gi|52346506|gb|AAU39140.1| TruA [Bacillus licheniformis ATCC 14580] gi|317388783|gb|EFV69602.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2] Length = 247 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 136/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G ++G+Q Q +IQ +EKA+ + E + V +GRTDSGVHA+ Sbjct: 1 MRMKCTISYDGHLFYGYQVQPGQRTIQDELEKALQTLHKAKERIPVVSSGRTDSGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD ALNA L D IS+ V+ QFHARFSA R+ Y Y I Sbjct: 61 QTIHFDSPLSIPEAKWPYALNALL--PDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ +P LD E ++ A+++LVG HDFT+F + + +RT+ + + Sbjct: 119 RHPDVFKRYYAYHVPYDLDMEKVKEASRYLVGTHDFTSFCATKTEVKDKVRTVHELEWSD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +++R+V FL+ +R G+L VG GK++ D+EK + A++R G AP GL Sbjct: 179 TGDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGRTAPAHGL 238 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 239 YLWRVIYD 246 >gi|312622107|ref|YP_004023720.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kronotskyensis 2002] gi|312202574|gb|ADQ45901.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kronotskyensis 2002] Length = 244 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 10/245 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q A+F Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQKANFK 65 Query: 66 ----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + P+ L L + I D I V F AR+SA +++Y Y I +++ Sbjct: 66 TSSKIPTDKFPLALNSVLPGDISIKDAIE------VPLDFSARYSARQKTYKYLIYNKKS 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + A+ P LD + M+ ++ +G +DF +F S +A + IR + + + Sbjct: 120 RPALLRNYAYYYPYQLDVDAMQRTCEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFEN 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 180 ECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLYL 239 Query: 242 DSVEY 246 V Y Sbjct: 240 VDVVY 244 >gi|330966232|gb|EGH66492.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 274 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERSLKAWV-------MGANINLPHDVSVSWARVMPATFHARFKAIARRYRYVI 120 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVQVEY 250 >gi|158319577|ref|YP_001512084.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] gi|158139776|gb|ABW18088.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] Length = 248 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 136/247 (55%), Gaps = 5/247 (2%) Query: 2 IRYCMI-IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R MI IEY+GS Y GWQ Q N +IQ I KA+ + G+ VV+HG+GRTD+GVHA Q Sbjct: 1 MRNIMIEIEYDGSNYSGWQVQPNAITIQEEIMKALKKLEGKDVVIHGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F L+ +PV L A+N+ L I+I++ V FHAR+SAI + Y+Y I Sbjct: 61 VATF-LMERNIPVERLPLAMNSNL--PKDITIIDAKEVPMDFHARYSAIGKRYIYHIYES 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A+ + ++ I LD M A++ L+G HDF F S +RTI + S Sbjct: 118 RYRSAILRNYSYHINYKLDRSKMMEASKLLIGTHDFRGFMSNGSSVEDTVRTIKSLEFKS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + + FL+ +R G+L +G G +EK L+ +DR G APP+GL Sbjct: 178 DGENIYMIIEGDGFLYNMVRIITGTLVQIGAGNKPLEQIEKILKTKDRSLAGHTAPPQGL 237 Query: 240 YFDSVEY 246 + D V Y Sbjct: 238 FLDKVFY 244 >gi|22125494|ref|NP_668917.1| tRNA pseudouridine synthase A [Yersinia pestis KIM 10] gi|45442187|ref|NP_993726.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Microtus str. 91001] gi|108808073|ref|YP_651989.1| tRNA pseudouridine synthase A [Yersinia pestis Antiqua] gi|108812343|ref|YP_648110.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|145599273|ref|YP_001163349.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides F] gi|162419146|ref|YP_001604969.1| tRNA pseudouridine synthase A [Yersinia pestis Angola] gi|165925379|ref|ZP_02221211.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. F1991016] gi|165937079|ref|ZP_02225644.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. IP275] gi|166008316|ref|ZP_02229214.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. E1979001] gi|166214223|ref|ZP_02240258.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. B42003004] gi|167398935|ref|ZP_02304459.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421195|ref|ZP_02312948.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424547|ref|ZP_02316300.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469280|ref|ZP_02333984.1| tRNA pseudouridine synthase A [Yersinia pestis FV-1] gi|170023770|ref|YP_001720275.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis YPIII] gi|229838336|ref|ZP_04458495.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895366|ref|ZP_04510539.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides A] gi|229898902|ref|ZP_04514047.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. India 195] gi|229902698|ref|ZP_04517815.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|270490127|ref|ZP_06207201.1| tRNA pseudouridine synthase A [Yersinia pestis KIM D27] gi|294504649|ref|YP_003568711.1| tRNA pseudouridine synthase A [Yersinia pestis Z176003] gi|21958390|gb|AAM85168.1|AE013763_2 pseudouridylate synthase I [Yersinia pestis KIM 10] gi|45437051|gb|AAS62603.1| pseudouridylate synthase I [Yersinia pestis biovar Microtus str. 91001] gi|108775991|gb|ABG18510.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|108779986|gb|ABG14044.1| tRNA pseudouridine synthase A [Yersinia pestis Antiqua] gi|145210969|gb|ABP40376.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides F] gi|162351961|gb|ABX85909.1| tRNA pseudouridine synthase A [Yersinia pestis Angola] gi|165914942|gb|EDR33554.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. IP275] gi|165922986|gb|EDR40137.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. F1991016] gi|165992698|gb|EDR44999.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. E1979001] gi|166204579|gb|EDR49059.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. B42003004] gi|166960684|gb|EDR56705.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051439|gb|EDR62847.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056429|gb|EDR66198.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750304|gb|ACA67822.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis YPIII] gi|229680145|gb|EEO76244.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|229688450|gb|EEO80521.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. India 195] gi|229694702|gb|EEO84749.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701674|gb|EEO89700.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides A] gi|262362710|gb|ACY59431.1| tRNA pseudouridine synthase A [Yersinia pestis D106004] gi|270338631|gb|EFA49408.1| tRNA pseudouridine synthase A [Yersinia pestis KIM D27] gi|294355108|gb|ADE65449.1| tRNA pseudouridine synthase A [Yersinia pestis Z176003] gi|320014566|gb|ADV98137.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 293 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 30 LKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQV 89 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +N++L I++ + VD FHARFSA R Y Y I + R Sbjct: 90 VHFVTSAVRKDAAWTMGVNSHLPAD--IAVRWVKTVDNDFHARFSATARRYRYIIFSHRY 147 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 148 RPAILAQGVTHCY-MPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRH 206 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 207 GAYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLY 266 Query: 241 FDSVEY 246 SV+Y Sbjct: 267 LVSVDY 272 >gi|68249766|ref|YP_248878.1| tRNA pseudouridine synthase A [Haemophilus influenzae 86-028NP] gi|81335806|sp|Q4QL79|TRUA_HAEI8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|68057965|gb|AAX88218.1| tRNA pseudouridine synthase A [Haemophilus influenzae 86-028NP] Length = 269 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|163790163|ref|ZP_02184597.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] gi|159874654|gb|EDP68724.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] Length = 279 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 143/253 (56%), Gaps = 15/253 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 IRY MII+Y+G+ + G+Q Q N ++QG I+KA+ ++T G +++HG+GRTDSGVHA Q Sbjct: 4 IRYKMIIQYDGTHFAGFQIQPNDRTVQGEIQKALKIMTKGLEIIIHGSGRTDSGVHAKGQ 63 Query: 61 VAHFDLVREWVPVILC-----KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD P++L +ALN+ +D + + ++IVD FHAR++ + Y YR Sbjct: 64 VIHFDY-----PILLPVENMQRALNSL--TTDELFVEKVAIVDTNFHARYNTSGKKYQYR 116 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + P ++ P +D E ++ A + L G HDF++F + + + +RT+ Sbjct: 117 VDLNAIPNPFKRLYTLHHPYPIDMEKLQNALKDLEGEHDFSSFCASNSGRENKVRTVYEA 176 Query: 176 DV--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V + F N + FL+ +R FVG+L + +G + ++++ L +DR E GP Sbjct: 177 SVVKDIFNNELIFTFSGNGFLYNMVRIFVGTLLQIANGLRPADEIKRLLAVKDRNEAGPT 236 Query: 234 APPEGLYFDSVEY 246 A P+GLY V Y Sbjct: 237 AKPQGLYLMEVYY 249 >gi|302187262|ref|ZP_07263935.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae 642] Length = 274 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 133/251 (52%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD ++ WV + A + + +S+ ++ FHARF AI R Y Y I Sbjct: 68 VHFDTQAERTMKAWV-------MGANINLPHDVSVTWARVMPAAFHARFKAIARRYRYVI 120 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P L + W + LD E M AA+ LVG HDF+ FR+ CQA SP++ + H Sbjct: 121 YNDQIRPAHLNQEITW-NHRPLDVERMAQAAEFLVGTHDFSAFRAGQCQAKSPVKQLHHL 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A Sbjct: 180 RVTRHGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAH 239 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 240 PYGLYLVGVEY 250 >gi|319897314|ref|YP_004135510.1| tRNA pseudouridine synthase a [Haemophilus influenzae F3031] gi|317432819|emb|CBY81184.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3031] Length = 269 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|197285647|ref|YP_002151519.1| tRNA pseudouridine synthase A [Proteus mirabilis HI4320] gi|194683134|emb|CAR43721.1| tRNA pseudouridine synthase A [Proteus mirabilis HI4320] Length = 281 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 18 LKIALGIEYDGSHYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ +N +L I++ + V FHARFSA R Y Y I R Sbjct: 78 VHFETTAHRKDAAWTMGVNTHLP--QDIAVRWVKTVANDFHARFSATARRYRYVIFNHRY 135 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ + Sbjct: 136 RPAILSSGVTHF-HYPLDAQRMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHVNVSRY 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 195 GDYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQAITWMAELLALKDRTKAAATAKANGLY 254 Query: 241 FDSVEY 246 SV+Y Sbjct: 255 LVSVDY 260 >gi|262366637|gb|ACY63194.1| tRNA pseudouridine synthase A [Yersinia pestis D182038] Length = 293 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 30 LKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQV 89 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +N++L I++ + VD FHARFSA R Y Y I + R Sbjct: 90 VHFVTSAVRKDAAWTMGVNSHLPAD--IAVRWVKTVDNDFHARFSATARRYRYIIFSHRY 147 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 148 RPAILAQGVTHCY-MPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRH 206 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 207 GAYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLY 266 Query: 241 FDSVEY 246 SV+Y Sbjct: 267 LVSVDY 272 >gi|16273533|ref|NP_439786.1| tRNA pseudouridine synthase A [Haemophilus influenzae Rd KW20] gi|260580419|ref|ZP_05848248.1| tRNA pseudouridine synthase A [Haemophilus influenzae RdAW] gi|1174804|sp|P45291|TRUA_HAEIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1574492|gb|AAC23291.1| pseudouridylate synthase I (truA) [Haemophilus influenzae Rd KW20] gi|260093096|gb|EEW77030.1| tRNA pseudouridine synthase A [Haemophilus influenzae RdAW] Length = 269 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGTGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|51596937|ref|YP_071128.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 32953] gi|186896018|ref|YP_001873130.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis PB1/+] gi|51590219|emb|CAH21856.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 32953] gi|186699044|gb|ACC89673.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis PB1/+] Length = 299 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 36 LKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQV 95 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +N++L I++ + VD FHARFSA R Y Y I + R Sbjct: 96 VHFVTSAVRKDAAWTMGVNSHLPAD--IAVRWVKTVDNDFHARFSATARRYRYIIFSHRY 153 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 154 RPAILAQGVTHCY-MPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRH 212 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 213 GAYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLY 272 Query: 241 FDSVEY 246 SV+Y Sbjct: 273 LVSVDY 278 >gi|266620223|ref|ZP_06113158.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] gi|288868186|gb|EFD00485.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] Length = 354 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +I+ + +A+ + E V V GA RTDSGVHA Sbjct: 1 MKRIKLIVAYDGTNYCGWQIQNNGRTIEEVLNEALTALLHEKVAVIGASRTDSGVHAEGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN ++ + I +L V +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTENRMPADKICFALNQ--RLPEDIRVLKSEEVPLTWHPRKCNCVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + A+ LD E M+ AA++LVG HDFT+F + QA +RTI DV Sbjct: 119 IEVPTLRLYAYFCYYPLDVEKMKQAAEYLVGEHDFTSFCAPRTQAEDMVRTIYSLDVGKT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IRV FL+ +R G+L VG G W +E+ L A+ R GP A GL Sbjct: 179 GDMITIRVSGSGFLYNMVRIIAGTLMKVGLGVWPPEHVEEILDARSRAAAGPTAVARGLT 238 Query: 241 FDSVE 245 S+E Sbjct: 239 LISLE 243 >gi|165976323|ref|YP_001651916.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307250146|ref|ZP_07532106.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256957|ref|ZP_07538734.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|238687566|sp|B0BPI7|TRUA_ACTPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|165876424|gb|ABY69472.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306857811|gb|EFM89907.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864532|gb|EFM96438.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 262 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 136/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ ++ W C NA L D I++ V + FHARFSA R Y Y I Sbjct: 61 VHFETQAIRPLQSW-----CFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 K R+ ++PK LD + M A Q L+G +DF++FR+ CQ+ +P Sbjct: 114 FN-------NKLRSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + + +V+ GN I + + A +F+H +R+ VGSL VG G+ ++ L +DR Sbjct: 167 RNVHYLNVSRLGNYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 227 AAPTAKAEGLYLVDVHY 243 >gi|260589149|ref|ZP_05855062.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|331082565|ref|ZP_08331690.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] gi|260540569|gb|EEX21138.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|330400543|gb|EGG80173.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] Length = 245 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG ++Q + + + TGE + GA RTD+GVHAL Sbjct: 1 MKRVKLTVAYDGTNYCGWQVQPNGITVQEVLNQCLSEFTGENIETIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN ++ + I I VD FH R+ +++Y YRI+ + Sbjct: 61 VAVFDTEMRMPGDKFSFALNQ--RLPEDIRIQKSEEVDADFHPRYVKSQKTYEYRILNCR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + LD + M+ AA +L+G HDF +F Q + +RT+ + Sbjct: 119 FPIPTERFYSHFTYIPLDVDKMKEAASYLIGEHDFKSFCGTGAQVKTTVRTVKEIQIEKS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R G+L +G G + +++ L+A+DRK+ GP AP GL Sbjct: 179 GDRITIRITGEGFLYNMVRIIAGTLMDIGGGLYPPEKMKEILEAKDRKKAGPTAPARGLT 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LMKIQY 244 >gi|134301921|ref|YP_001121890.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis WY96-3418] gi|166228700|sp|A4IXW8|TRUA_FRATW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134049698|gb|ABO46769.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis WY96-3418] Length = 258 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q S+EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQESLEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|37527059|ref|NP_930403.1| tRNA pseudouridine synthase A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786492|emb|CAE15547.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 279 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 137/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+QG +E+A+ V E + V AGRTD+GVHA QV Sbjct: 16 MKIALGIEYDGSRYYGWQRQQEVKSVQGCLEEALSKVADEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ + +N +L I++ + VD+ FHARFSA R Y Y I R Sbjct: 76 VHFETSVQRKDAAWTMGVNVHL--PPDIAVRWVKTVDEGFHARFSATARRYRYIIFNHRY 133 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G LD + M AAQ ++G +DFT+FR++ CQ+ +P R + H +VN + Sbjct: 134 RPAVLANGVTHF-HYPLDEKRMHQAAQCILGENDFTSFRAVQCQSKTPWRNVMHINVNRY 192 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I + A +F+H +R+ GSL +G G + + L +DR + A GLY Sbjct: 193 GHYVVIDIKANAFVHHMVRNIAGSLMEIGCGNQDINWMAQLLALKDRAKAAATAKAAGLY 252 Query: 241 FDSVEY 246 +V+Y Sbjct: 253 LVAVDY 258 >gi|227356152|ref|ZP_03840541.1| tRNA pseudouridine synthase A [Proteus mirabilis ATCC 29906] gi|227163616|gb|EEI48532.1| tRNA pseudouridine synthase A [Proteus mirabilis ATCC 29906] Length = 289 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 26 LKIALGIEYDGSHYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF+ +N +L I++ + V FHARFSA R Y Y I R Sbjct: 86 VHFETTAHRKDAAWTMGVNTHLP--QDIAVRWVKTVANDFHARFSATARRYRYVIFNHRY 143 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ + Sbjct: 144 RPAILSSGVTHF-HYPLDAQRMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHVNVSRY 202 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 203 GDYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQAITWMAELLALKDRTKAAATAKANGLY 262 Query: 241 FDSVEY 246 SV+Y Sbjct: 263 LVSVDY 268 >gi|260582150|ref|ZP_05849944.1| tRNA pseudouridine synthase A [Haemophilus influenzae NT127] gi|260094782|gb|EEW78676.1| tRNA pseudouridine synthase A [Haemophilus influenzae NT127] Length = 269 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRQEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|160881752|ref|YP_001560720.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160430418|gb|ABX43981.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 245 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q N +I+G + + + + E +V+ GA RTD+GVHA Sbjct: 1 MKRVLLKVAYDGTNYCGWQVQPNAKTIEGVLNECLTKLLKEEIVIIGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD L ALNA+L + I I V+ FH R+ R++Y YRI Sbjct: 61 VAVFDTNSRIPAEKLSYALNAHL--PEDIVIQASMEVESDFHPRYCDTRKTYEYRIYNAT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + A + LD E MR AA +L+G HDF +F S + Q RTI + Sbjct: 119 FPLPTNRRYAHFVYYDLDLEAMRKAASYLIGEHDFVSFCSANTQVKDTTRTIYDIQIEKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI IR+ FL+ +R G+L VG +W + +AL +DR+ GP AP +GL Sbjct: 179 RELIVIRIKGNGFLYNMVRIIAGTLIQVGTHQWEPERVLEALTKKDRQAAGPTAPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|325276985|ref|ZP_08142659.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51] gi|324097881|gb|EGB96053.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51] Length = 286 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 130/251 (51%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ +G S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 20 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPIAVVCAGRTDAGVHGCGQV 79 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R W + + IS++ + FHARF A R Y Y I Sbjct: 80 VHFDTRAVRDERAWT-------MGTNFNLPHDISVVWSQPMPADFHARFKACARRYRYVI 132 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P L + W + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H Sbjct: 133 YNDPIRPAHLAEEVTW-NHRPLDVERMAQAAQSLLGTHDFSAFRASQCQAKSPIKHIYHL 191 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I + V A +FLH +R+ G L +G G+ + + L+ +DR+E G A Sbjct: 192 RVTRHGQMIVLDVRATAFLHHMVRNIAGVLMAIGSGERPVSWAREVLEGRDRREGGVTAH 251 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 252 PYGLYLVQVEY 262 >gi|90410767|ref|ZP_01218782.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK] gi|90328398|gb|EAS44696.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK] Length = 261 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYCGWQRQVDVDSVQERLEKALSHIANKPIAVFCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V +NA+L IS+ + V FHARFSA R Y Y I Sbjct: 61 VHFDVDVDRQMVAWTIGVNAHL--PRDISVRWATPVSDDFHARFSATARRYRYIIYNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ+LVG HDFT+ R+ CQ+ SP R + H +V+ G Sbjct: 119 RPAIFGIGVSHYHGHLDEKKMHEAAQYLVGEHDFTSVRASQCQSRSPWRAMKHVNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ T ++ L+ +DR+ G A GLY Sbjct: 179 DFVIIDIKANAFVHHMVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAGLYL 238 Query: 242 DSVEY 246 +V+Y Sbjct: 239 VAVDY 243 >gi|32491058|ref|NP_871312.1| hypothetical protein WGLp309 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340463|sp|Q8D2P5|TRUA_WIGBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25166265|dbj|BAC24455.1| truA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 264 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 139/241 (57%), Gaps = 6/241 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--D 65 I Y G+ Y GWQ QKN SIQ +E A+F +GE + ++ AGRTD+ VHAL QV HF D Sbjct: 8 ISYQGNNYCGWQSQKNIISIQEYVELALFKFSGEKIKIYCAGRTDAKVHALLQVVHFYTD 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + R + IL +N+YL ISI+ + V FHAR+SAI + YLY I + + Sbjct: 68 IKRSYRQWIL--GVNSYLPYD--ISIMWVIKVHNNFHARYSAIAKKYLYLIHNNISRSGI 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + + SL+ +M+ AAQ L+G+HDF++F+ CQ+ + R I + +N + I Sbjct: 124 FRKYCFNVFISLNINDMKKAAQKLIGKHDFSSFKGSECQSKTTYRVIYYIRINKYKEYIF 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A SFL+ +R+ +G+L +G GK + + + L ++ K A P+GLY +V Sbjct: 184 VEIKANSFLNHMMRNIIGNLIEIGKGKKSKEWMSELLFLKNNKFSIFSADPKGLYLSNVY 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|149365240|ref|ZP_01887275.1| tRNA pseudouridine synthase A [Yersinia pestis CA88-4125] gi|153950548|ref|YP_001400399.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 31758] gi|218929838|ref|YP_002347713.1| tRNA pseudouridine synthase A [Yersinia pestis CO92] gi|25009503|sp|Q8ZD27|TRUA_YERPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901277|sp|Q668W9|TRUA_YERPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166991167|sp|A7FGM1|TRUA_YERP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115348449|emb|CAL21385.1| tRNA pseudouridine synthase A [Yersinia pestis CO92] gi|149291653|gb|EDM41727.1| tRNA pseudouridine synthase A [Yersinia pestis CA88-4125] gi|152962043|gb|ABS49504.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 31758] Length = 264 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +N++L I++ + VD FHARFSA R Y Y I + R Sbjct: 61 VHFVTSAVRKDAAWTMGVNSHLPAD--IAVRWVKTVDNDFHARFSATARRYRYIIFSHRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 119 RPAILAQGVTHCY-MPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 178 GAYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLY 237 Query: 241 FDSVEY 246 SV+Y Sbjct: 238 LVSVDY 243 >gi|146282143|ref|YP_001172296.1| tRNA pseudouridine synthase A [Pseudomonas stutzeri A1501] gi|145570348|gb|ABP79454.1| tRNA-pseudouridine synthase I [Pseudomonas stutzeri A1501] Length = 286 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 135/252 (53%), Gaps = 16/252 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y G+QRQ+ G SIQ S+E A+ V G V + AGRTD+ VHA Q Sbjct: 19 RIALGVEYKGSRYRGFQRQRAGVPSIQESLENALTRVAGGHPVTLSCAGRTDALVHASGQ 78 Query: 61 VAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD E WV + A + + IS+ + F ARFSA+ R Y Y Sbjct: 79 VVHFDTPVERSMHAWV-------MGANMNLPPDISVTWAKKMPPHFDARFSAMARRYRYV 131 Query: 116 IITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I Q P + + W + LD E MR AA LVG HDF+ FR+ CQA SPI+TI H Sbjct: 132 IYNDQIRPAHMAEEVTWNH-RPLDIERMRAAAAALVGTHDFSAFRARQCQAKSPIKTIHH 190 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ FG LI I V A +FLH +R+F G L +G G+ + L+++ R+ G A Sbjct: 191 LELLQFGRLIVIDVRANAFLHHMVRNFAGVLMTIGAGERPVEWAAQVLESRVRRTGGVTA 250 Query: 235 PPEGLYFDSVEY 246 P GLY V+Y Sbjct: 251 HPYGLYLVEVDY 262 >gi|319776538|ref|YP_004139026.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3047] gi|329124048|ref|ZP_08252595.1| tRNA pseudouridine synthase A [Haemophilus aegyptius ATCC 11116] gi|317451129|emb|CBY87362.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3047] gi|327467473|gb|EGF12971.1| tRNA pseudouridine synthase A [Haemophilus aegyptius ATCC 11116] Length = 269 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHRAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|296315347|ref|ZP_06865288.1| tRNA pseudouridine synthase A [Neisseria polysaccharea ATCC 43768] gi|296837693|gb|EFH21631.1| tRNA pseudouridine synthase A [Neisseria polysaccharea ATCC 43768] Length = 267 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 10 RWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 70 VHFDTAARRPAQAWIRGTNAVLP--EGIAVLHARQTAPGFHARFDAYGRHYRYLLESSPV 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + G Sbjct: 128 RSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQAG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 188 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSALIQERSRLKAPPTFMPDGLYL 247 Query: 242 DSVEY 246 V+Y Sbjct: 248 TGVDY 252 >gi|262198313|ref|YP_003269522.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365] gi|262081660|gb|ACY17629.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365] Length = 264 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 128/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY+G+G GWQRQ N ++Q +E A+ + G V + GA RTD+GVHAL QVAHF Sbjct: 9 LVLEYDGTGLSGWQRQNNAPTVQAHVEDALSSMLGRAVQIVGASRTDAGVHALGQVAHFR 68 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P + LN K+ I+++ + V FHARF + + Y Y + TR A L Sbjct: 69 TGSSIPPHGFLRGLNG--KLPPAIAVVACAEVRADFHARFDSRGKHYRYALHTRAARAPL 126 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SFGNLI 184 + RAW P+ LD M AAQ ++G DF FR+ C A + R +D ++ +LI Sbjct: 127 LRERAWHCPRPLDLAAMERAAQAMLGERDFQAFRASGCTAKTSRRRVDRVALSRPAADLI 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I V +FL +R G+L VG G+ + ++ L ++DR G AP GL V Sbjct: 187 HIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHGLTLVEV 246 Query: 245 EY 246 Y Sbjct: 247 FY 248 >gi|299138466|ref|ZP_07031645.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX8] gi|298599712|gb|EFI55871.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX8] Length = 271 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 99/270 (36%), Positives = 142/270 (52%), Gaps = 26/270 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + GWQ Q ++QGS+ A+ VTGE V+ G+GRTDSGVHAL Q Sbjct: 1 MNHWKLTLSYDGTLFHGWQVQPELPTVQGSLALALKYVTGESVLPQGSGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L P L +ALN L S I IL +VD+ FHAR SA R++Y YRI R+ Sbjct: 61 VTSFALETSIPPANLQRALNRALPPS--IRILTAELVDESFHARHSARRKTYEYRIFERR 118 Query: 121 APLALEK--GRAWLIPKSLDC------ENMRIAAQHLVGRHDFTTF------RSIHCQAS 166 + + +L P + DC E M+ A+++L G HDFT+F R + + S Sbjct: 119 TAASPSERICSPFLAPYAWDCRWQLAIEPMQEASKYLCGTHDFTSFAASDPERGLREEES 178 Query: 167 ----------SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +P++T+ L+ RV FLH +R+ VG+L VG G Sbjct: 179 DDANGKAHGPNPVKTLLQAGWAHEDGLLVYRVTGSGFLHHMVRNIVGTLADVGRGSLAVD 238 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ + L A++R GP AP GL+ SVEY Sbjct: 239 EIPRILAARNRTAAGPTAPACGLFLHSVEY 268 >gi|170720741|ref|YP_001748429.1| tRNA pseudouridine synthase A [Pseudomonas putida W619] gi|169758744|gb|ACA72060.1| tRNA pseudouridine synthase A [Pseudomonas putida W619] Length = 284 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 130/251 (51%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G S+Q ++E+A+ V E + V AGRTD+GVH Q+ Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSKVANEPITVVCAGRTDAGVHGCGQI 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R W L + IS++ + FHARF A R Y Y I Sbjct: 78 VHFDTRANRDERAWT-------LGTNFNLPHDISVVWSRPMPADFHARFKATARRYRYVI 130 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P L + W + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H Sbjct: 131 YNDPIRPAHLAEEVTW-NHRPLDVERMADAAQFLLGTHDFSAFRASQCQAKSPIKHIHHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I + V A +FLH +R+ G L +G G+ + + L+ ++R+E G A Sbjct: 190 RVTRHGQMIVLDVRATAFLHHMVRNIAGVLMTIGAGERPAGWAREVLEGRNRREGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVQVEY 260 >gi|325265188|ref|ZP_08131914.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324029592|gb|EGB90881.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 263 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + K + +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTVAYDGTNYCGWQIQPNGITIEEILNKKLSRLTGEEIRVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P L ALN ++ + I I+ V +H R+ ++Y Y I+ + Sbjct: 61 VAVFDTETTIPPDRLAYALNQ--RMPEDIVIVKSEEVPADWHPRYCDTVKTYEYLILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + LD + MR AA +L G HDF +F ++ +RTI D+ Sbjct: 119 IPDPTRRLTTYFVSYDLDLQKMRRAAGYLSGEHDFASFCNVRTNVEDTVRTIYELDILEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G +T ++ L+A+DR+ G APP GL Sbjct: 179 GEEITIRIRGNGFLYNMVRIIVGTLLRVGRGFYTPEQVKDILEAKDRQAAGVTAPPHGLR 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LIGIEY 244 >gi|323143617|ref|ZP_08078294.1| tRNA pseudouridine synthase A [Succinatimonas hippei YIT 12066] gi|322416680|gb|EFY07337.1| tRNA pseudouridine synthase A [Succinatimonas hippei YIT 12066] Length = 261 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY G Y G+QRQ N ++QG +EKA+ ++ E V + AGRTD+GV+A QV Sbjct: 1 MRVALGVEYEGWNYAGFQRQPNAVTVQGELEKALSIIADEPVSLVCAGRTDAGVNATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-TRQ 120 H D+ ++ L N K+ I+I IV + FHARFSA R Y Y I T Sbjct: 61 IHIDITKDRSEKALLLGTNT--KLPSDIAITWAKIVSEDFHARFSARARRYRYIIQNTMH 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L KG + + D E M+ AA+ L+G HDF +F+ Q+SS R + + +++ Sbjct: 119 RPGVLNKGVS-VYHGDYDIELMQKAAKILIGEHDFASFKGADEQSSSTFRCVHYIEISRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + A +FL+ +R+ VGSL LVG ++ E+A +A++R GP A P+GLY Sbjct: 178 GPFIVFDIAANAFLNHMVRNIVGSLLLVGSKVKSTAWFEEAFKARNRDAAGPTAHPDGLY 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LVDVTY 243 >gi|145633047|ref|ZP_01788779.1| tRNA pseudouridine synthase A [Haemophilus influenzae 3655] gi|144986273|gb|EDJ92852.1| tRNA pseudouridine synthase A [Haemophilus influenzae 3655] Length = 269 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|145639258|ref|ZP_01794864.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittII] gi|145271561|gb|EDK11472.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittII] gi|309751137|gb|ADO81121.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2866] Length = 269 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPNKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|145637534|ref|ZP_01793192.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittHH] gi|145269340|gb|EDK09285.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittHH] Length = 269 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|308050321|ref|YP_003913887.1| tRNA pseudouridine synthase A [Ferrimonas balearica DSM 9799] gi|307632511|gb|ADN76813.1| tRNA pseudouridine synthase A [Ferrimonas balearica DSM 9799] Length = 263 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 126/247 (51%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G GYFGWQRQ+ +Q +E AI V V V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGHGYFGWQRQREVVGVQERLEAAIAKVANHPVEVACAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HFD + P LNA L D I++ V FHARFSA R Y Y I R Sbjct: 61 VHFDAQFDRRPAAWTLGLNANL--PDGIAVRWAQPVSDDFHARFSATARRYRYIIFNNRL 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G + LD M A Q L+G +DF+ FR+I CQ+ +P R I H V Sbjct: 119 RPGILRHGVSHYH-HPLDEALMHQAGQQLLGENDFSAFRAIQCQSRTPWRNIHHLRVTRQ 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G + + L+ +DR A EGLY Sbjct: 178 GQYVIIDIKANAFVHHMVRNIAGSLMEVGMGNRPVEWIAELLEGKDRNLAAATAKAEGLY 237 Query: 241 FDSVEYS 247 V+Y Sbjct: 238 LVEVDYP 244 >gi|145630935|ref|ZP_01786711.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] gi|144983402|gb|EDJ90878.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] Length = 269 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVYHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|52425230|ref|YP_088367.1| tRNA pseudouridine synthase A [Mannheimia succiniciproducens MBEL55E] gi|52307282|gb|AAU37782.1| TruA protein [Mannheimia succiniciproducens MBEL55E] Length = 270 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 94/258 (36%), Positives = 132/258 (51%), Gaps = 26/258 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +++ + IEYNG YFGWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH Q Sbjct: 7 IMKIALGIEYNGKNYFGWQRQEKVHSVQAELEKALSFVANEKIEVFCAGRTDSGVHGTGQ 66 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HF+ + W A + D I++ V FHARFSA R Y Y Sbjct: 67 VVHFETNAIRPEKAW-------AFGTNANLPDDIAVRWAKEVPDDFHARFSATARRYRYV 119 Query: 116 IITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 L K R+ ++P LD M+ A + L+G +DF++FR+ CQ+++P Sbjct: 120 -------LYCNKLRSAILPYGITHTHLDLDEHKMQEAGRFLLGENDFSSFRAAQCQSNTP 172 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 R I H +V GN + + + A +F+H +R+ VGSL VG G +E L ++RK Sbjct: 173 WRNIHHLNVIRRGNFVIVDIKANAFVHHMVRNIVGSLMEVGCGNQPPEWIEWLLAQKNRK 232 Query: 229 ECGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 233 LAAPTAKAEGLYLVQVTY 250 >gi|261401977|ref|ZP_05988102.1| tRNA pseudouridine synthase A [Neisseria lactamica ATCC 23970] gi|269207832|gb|EEZ74287.1| tRNA pseudouridine synthase A [Neisseria lactamica ATCC 23970] Length = 267 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 10 RWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGESVATTVAGRTDTGVHATAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 70 VHFDTAARRPAQAWIRGTNAALP--EGIAVLHARQTSPGFHARFDAYGRHYRYLLESSPV 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + G Sbjct: 128 RSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQTG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 188 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSTLIRERSRLKAPPTFMPDGLYL 247 Query: 242 DSVEY 246 V+Y Sbjct: 248 TGVDY 252 >gi|42559741|sp|Q7MB17|TRUA_PHOLL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 264 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ+ S+QG +E+A+ V E + V AGRTD+GVHA QV HF+ Sbjct: 7 IEYDGSRYYGWQRQQEVKSVQGCLEEALSKVADEPISVFCAGRTDAGVHATGQVVHFETS 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +N +L I++ + VD+ FHARFSA R Y Y I R P L Sbjct: 67 VQRKDAAWTMGVNVHL--PPDIAVRWVKTVDEGFHARFSATARRYRYIIFNHRYRPAVLA 124 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 G LD + M AAQ ++G +DFT+FR++ CQ+ +P R + H +VN +G+ + I Sbjct: 125 NGVTHF-HYPLDEKRMHQAAQCILGENDFTSFRAVQCQSKTPWRNVMHINVNRYGHYVVI 183 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ GSL +G G + + L +DR + A GLY +V+Y Sbjct: 184 DIKANAFVHHMVRNIAGSLMEIGCGNQDINWMAQLLALKDRAKAAATAKAAGLYLVAVDY 243 >gi|148828368|ref|YP_001293121.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittGG] gi|166228702|sp|A5UIY2|TRUA_HAEIG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148719610|gb|ABR00738.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittGG] Length = 269 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAIRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|145627788|ref|ZP_01783589.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.1-21] gi|144979563|gb|EDJ89222.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.1-21] Length = 269 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHEAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|54309813|ref|YP_130833.1| tRNA pseudouridine synthase A [Photobacterium profundum SS9] gi|51316618|sp|Q6LNU5|TRUA_PHOPR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46914251|emb|CAG21031.1| Putative tRNA pseudouridine synthase A [Photobacterium profundum SS9] Length = 261 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYCGWQRQVDVDSVQERLEKALSHIANKPIAVFCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V +NA+L IS+ + V FHARFSA R Y Y I Sbjct: 61 VHFDVDVDRQMVAWTIGVNAHL--PRDISVRWATQVSDDFHARFSATARRYRYIIYNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ+LVG HDFT+ R+ CQ+ SP R + H +V+ G Sbjct: 119 RPAIFGVGVSHYHGHLDEKKMHEAAQYLVGEHDFTSVRASQCQSRSPWRAMKHVNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ T ++ L+ +DR+ G A GLY Sbjct: 179 DFVIIDIKANAFVHHMVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAGLYL 238 Query: 242 DSVEY 246 +V+Y Sbjct: 239 VAVDY 243 >gi|301170402|emb|CBW30008.1| pseudouridylate synthase I [Haemophilus influenzae 10810] Length = 269 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDTEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|237808326|ref|YP_002892766.1| tRNA pseudouridine synthase A [Tolumonas auensis DSM 9187] gi|259550489|sp|C4LF13|TRUA_TOLAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|237500587|gb|ACQ93180.1| tRNA pseudouridine synthase A [Tolumonas auensis DSM 9187] Length = 261 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ Y+GWQRQ+ +S+Q +E A+ V V + AGRTD+GV+A QV Sbjct: 1 MRIALGIEYFGADYYGWQRQREVNSVQQELETALSRVANHPVEIQCAGRTDAGVNATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA ++ D I++ +VD FHARFSA R Y Y I Sbjct: 61 IHFDTTANRQMSAWTLGINA--QLPDDIAVRWAHVVDDNFHARFSATARRYRYIIYNEPL 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L KG + L+ + M A Q L+G DFT+FR+ CQ+++P R I V+ Sbjct: 119 RPGILAKGVSHYY-HPLNADQMNEAGQLLLGERDFTSFRAAQCQSNTPFRNIMSLSVHRA 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + + A +FLH +R+ +GSL LVG G+ + + L A+DR G A EGLY Sbjct: 178 GSYVILDIQANAFLHHMVRNIMGSLLLVGTGEKPKEWIGEILDAKDRTVSGATAKAEGLY 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LVDVTY 243 >gi|118497491|ref|YP_898541.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida U112] gi|195536184|ref|ZP_03079191.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida FTE] gi|254372827|ref|ZP_04988316.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida GA99-3549] gi|166228699|sp|A0Q6C2|TRUA_FRATN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118423397|gb|ABK89787.1| tRNA pseudouridine synthase A [Francisella novicida U112] gi|151570554|gb|EDN36208.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3549] gi|194372661|gb|EDX27372.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida FTE] Length = 258 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGRNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|300903709|ref|ZP_07121624.1| tRNA pseudouridine synthase A [Escherichia coli MS 84-1] gi|300404291|gb|EFJ87829.1| tRNA pseudouridine synthase A [Escherichia coli MS 84-1] Length = 270 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 130/241 (53%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTRAAATAKAEGLYLVAVDY 252 Query: 247 S 247 Sbjct: 253 P 253 >gi|332678185|gb|AEE87314.1| tRNA pseudouridine synthase A [Francisella cf. novicida Fx1] Length = 258 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IINFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|74317934|ref|YP_315674.1| tRNA pseudouridine synthase A [Thiobacillus denitrificans ATCC 25259] gi|123759044|sp|Q3SHL7|TRUA_THIDA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|74057429|gb|AAZ97869.1| tRNA pseudouridine synthase [Thiobacillus denitrificans ATCC 25259] Length = 260 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY G G+ GWQ Q +Q ++EKA+ + GE + V AGRTD+GVHA Q Sbjct: 1 MMRIAVGLEYRGVGFCGWQSQPQACGVQDAVEKAVSAIAGEAITVTAAGRTDTGVHAALQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + +N++L +++L VD +FHARF+A R Y Y ++ Sbjct: 61 IVHFDTTSVRPLTAWVRGVNSHLPAG--VAVLWAREVDAEFHARFAAFERGYRYVLLNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L G + LD M AA L+GRHDF+ FR+ CQA SP++ + + Sbjct: 119 VRPGLNAGLVGWHHRPLDVACMNRAASPLIGRHDFSAFRAAECQARSPVKELRRALIERR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + A FLH +R+ +G L +G G L + L +DR P GLY Sbjct: 179 GDYLLCDFRADGFLHHMVRNLMGCLVQIGAGGRPPEWLHEVLAGRDRTRAAPTFEAAGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LTHIRY 244 >gi|119475872|ref|ZP_01616224.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2143] gi|119450499|gb|EAW31733.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2143] Length = 288 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 132/247 (53%), Gaps = 6/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+GS Y GWQ Q+ +++Q ++EKA+ V V+V AGRTD+GVHA Q Sbjct: 27 RVALCVSYDGSAYHGWQSQRKPQVATVQETLEKALSSVANANVIVQCAGRTDTGVHASHQ 86 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + N L S I+I V +F+ARFSA R Y Y I+ R Sbjct: 87 IVHFDSPSARGEKAWVRGGNTNLPSS--IAIQWAKPVSAKFNARFSATARRYRYVILNRP 144 Query: 121 APLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A A L G W LD +M AAQ LVG DFT++R+ CQ+ +P+R I DV+ Sbjct: 145 ARSAILSAGVTWQR-YPLDEISMHEAAQALVGELDFTSYRAAACQSKTPMRNIHRVDVSR 203 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ I + A +FLH +R+ G L +G G + E+ L A+DR APP GL Sbjct: 204 QGDLVIIDIQANAFLHHMVRNIAGVLMAIGTGAKPTVWAEEVLLAKDRSVAAATAPPHGL 263 Query: 240 YFDSVEY 246 Y V Y Sbjct: 264 YLIGVTY 270 >gi|327480383|gb|AEA83693.1| tRNA pseudouridine synthase A [Pseudomonas stutzeri DSM 4166] Length = 275 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 135/252 (53%), Gaps = 16/252 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y G+QRQ+ G SIQ S+E A+ V G V + AGRTD+ VHA Q Sbjct: 8 RIALGVEYKGSRYRGFQRQRAGVPSIQESLENALTRVAGGHPVTLSCAGRTDALVHASGQ 67 Query: 61 VAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD E WV + A + + IS+ + F ARFSA+ R Y Y Sbjct: 68 VVHFDTPVERSMHAWV-------MGANMNLPPDISVTWAKKMPPHFDARFSAMARRYRYV 120 Query: 116 IITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I Q P + + W + LD E MR AA LVG HDF+ FR+ CQA SPI+TI H Sbjct: 121 IYNDQIRPAHMAEEVTWNH-RPLDIERMRAAAAALVGTHDFSAFRARQCQAKSPIKTIHH 179 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ FG LI I V A +FLH +R+F G L +G G+ + L+++ R+ G A Sbjct: 180 LELLQFGRLIVIDVRANAFLHHMVRNFAGVLMTIGAGERPVEWAAQVLESRVRRTGGVTA 239 Query: 235 PPEGLYFDSVEY 246 P GLY V+Y Sbjct: 240 HPYGLYLVEVDY 251 >gi|205372037|ref|ZP_03224854.1| tRNA pseudouridine synthase A [Bacillus coahuilensis m4-4] Length = 251 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 143/254 (56%), Gaps = 16/254 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++Y+G+ Y G+Q Q N +IQG IEK + + G+ + + +GRTD+GVHA+ Q Sbjct: 4 MRRIKCTVQYDGTWYAGYQVQPNSKTIQGEIEKVLEKIHGKPIRISASGRTDAGVHAIGQ 63 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD V +W+P+ N+ ++ + I ++++ V FH+RF +I + Y Y+ Sbjct: 64 VFHFDTDTKFPVEKWLPI-----FNS--QLPNDIVVIHVEEVAGSFHSRFGSIEKEYRYK 116 Query: 116 II--TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 + ++P + A+ +P SL + M A+++L+G HDFT+F S + +RTI Sbjct: 117 VYRAPHKSPFLIH--HAYHVPHSLSVQKMEEASRYLLGTHDFTSFCSAKTEVEDKVRTIF 174 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + N++ +V FL+ +R +G L VG GK ++++ L+A+DR+ G Sbjct: 175 TISIEEEENMLTFSLVGNGFLYNMVRIIIGVLIEVGQGKRAPIEVKEILEAKDRRAGGKT 234 Query: 234 APPEGLYFDSVEYS 247 AP +GLY V+YS Sbjct: 235 APAQGLYLYRVKYS 248 >gi|160935852|ref|ZP_02083227.1| hypothetical protein CLOBOL_00746 [Clostridium bolteae ATCC BAA-613] gi|158441596|gb|EDP19306.1| hypothetical protein CLOBOL_00746 [Clostridium bolteae ATCC BAA-613] Length = 248 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 3/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G+ Y GWQ+Q N +IQG +E + + G V VHG+GRTD+GVHA QVA+F L Sbjct: 7 LSYDGTRYDGWQKQGNTDRTIQGKLEAVLEKLEGSPVEVHGSGRTDAGVHAESQVANFHL 66 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + P + + +N YL + I++ ++ ++FH+R +A+R++Y Y+I T E Sbjct: 67 AKNMTPDEIMRYMNRYL--PEDIAVTRACVMPERFHSRLNALRKTYRYQIETAPKKNVFE 124 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + + + + LD M AA L G HD+ +F S IRTI+ G+ I I Sbjct: 125 RYYYYGLGQDLDVGKMEQAAAILTGTHDYKSFCGNKKMKKSTIRTIESICFYRMGSRIHI 184 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 FL +R G+L VG GK ++ L+A DR G APPEGL+ + VEY Sbjct: 185 SFTGNGFLQQMVRILSGTLIEVGTGKRKPEEMAAILEAGDRSMAGFTAPPEGLFLEKVEY 244 Query: 247 S 247 Sbjct: 245 G 245 >gi|187779482|ref|ZP_02995955.1| hypothetical protein CLOSPO_03078 [Clostridium sporogenes ATCC 15579] gi|187773107|gb|EDU36909.1| hypothetical protein CLOSPO_03078 [Clostridium sporogenes ATCC 15579] Length = 246 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + G+GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIGSGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTNFQGSTNEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPQTLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I + FLH IR G+L +G + +++ L+A+DR++ AP +GL Sbjct: 179 KDGYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLSPMNVKTILEAEDRRKASSTAPSQGL 238 Query: 240 YFDSVEY 246 + SV Y Sbjct: 239 FMTSVTY 245 >gi|145635070|ref|ZP_01790776.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittAA] gi|145267678|gb|EDK07676.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittAA] Length = 269 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EK++ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKSLSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVVY 243 >gi|312127288|ref|YP_003992162.1| tRNA pseudouridine synthase a [Caldicellulosiruptor hydrothermalis 108] gi|311777307|gb|ADQ06793.1| tRNA pseudouridine synthase A [Caldicellulosiruptor hydrothermalis 108] Length = 244 Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 133/241 (55%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ YFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q A+F Sbjct: 6 LTIEYDGTEYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQKANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALN+ L ISI + V F AR+SA +++Y Y I + + AL Sbjct: 66 TSSKIPTDKFPLALNSVL--PGDISIKDAVEVPLNFSARYSAKQKTYKYLIYNKNSRPAL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + I Sbjct: 124 LRNYAYYYPYQLDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNSYLTFENECIA 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY V Sbjct: 184 IYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLYLVDVV 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|258545708|ref|ZP_05705942.1| tRNA pseudouridine synthase A [Cardiobacterium hominis ATCC 15826] gi|258519078|gb|EEV87937.1| tRNA pseudouridine synthase A [Cardiobacterium hominis ATCC 15826] Length = 265 Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY+G+ Y GWQRQ ++IQ +E A+ V V AGRTD+GVHA QV Sbjct: 4 RYAVGLEYDGTHYAGWQRQPFFAATIQEQLECALSQVAAHPVETTCAGRTDAGVHATAQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N YL I + + V +FHAR+SA R Y Y I R Sbjct: 64 IHFDTGAARSDFAWLAGANRYLPAD--IRLQWIRAVPAEFHARYSARERHYRYLIRHRAQ 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P AL R KSLD M AAQ L+G HDF+ FR+ CQA SP R I DV Sbjct: 122 PSALWARRCHWHKKSLDAAAMHSAAQALIGEHDFSAFRAAECQAKSPWRFIRSIDVRERH 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + +FLH +R+ VG+L VGDG+ + + L ++DR+ G AP +GLYF Sbjct: 182 GWIAVDICGNAFLHHMVRNIVGTLLAVGDGRRDTAWPGEVLASRDRRCAGVTAPAQGLYF 241 Query: 242 DSVEY 246 V Y Sbjct: 242 HGVAY 246 >gi|62901272|sp|Q65TC8|TRUA_MANSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 263 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 131/257 (50%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG YFGWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKNYFGWQRQEKVHSVQAELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ + W A + D I++ V FHARFSA R Y Y Sbjct: 61 VHFETNAIRPEKAW-------AFGTNANLPDDIAVRWAKEVPDDFHARFSATARRYRYV- 112 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 L K R+ ++P LD M+ A + L+G +DF++FR+ CQ+++P Sbjct: 113 ------LYCNKLRSAILPYGITHTHLDLDEHKMQEAGRFLLGENDFSSFRAAQCQSNTPW 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R I H +V GN + + + A +F+H +R+ VGSL VG G +E L ++RK Sbjct: 167 RNIHHLNVIRRGNFVIVDIKANAFVHHMVRNIVGSLMEVGCGNQPPEWIEWLLAQKNRKL 226 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 227 AAPTAKAEGLYLVQVTY 243 >gi|311694720|gb|ADP97593.1| tRNA pseudouridine synthase A [marine bacterium HP15] Length = 302 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 129/250 (51%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + EY+G G+ GWQ QK+G S++ + A+ V V + AGRTD+GVHA Q+ Sbjct: 18 RVALAFEYDGRGFHGWQLQKSGVRSVEAELTAAVAKVANHAVDLVCAGRTDAGVHASYQI 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AHFD +R WV + + D IS+ FHARFSA R Y Y I Sbjct: 78 AHFDTPSVRNLRSWV-------MGINTALPDDISVHWAGNGVGDFHARFSATYRRYRYII 130 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +++G+ + LD + M AAQ L G HDF++FR+ CQ+ +PIR ++ Sbjct: 131 YNHPVRPGIQRGQVSWTFRPLDADRMHRAAQALAGEHDFSSFRAAGCQSRTPIRFLERIS 190 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V + + I V A +FLH +R+ G+L VG GK + + L A+DR G APP Sbjct: 191 VTRKRDFVVIDVQANAFLHHMVRNIAGALMAVGSGKQRPEWIHEILVARDRTAAGVTAPP 250 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 251 HGLYLVDVGY 260 >gi|295698698|ref|YP_003603353.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA] gi|291157129|gb|ADD79574.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA] Length = 255 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 139/247 (56%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y+GS Y GWQ+QKNG SIQ +E ++ +T E + + GRTDSGVHA QV Sbjct: 4 RVALGIQYDGSRYHGWQKQKNGLDSIQKRLESSLKKLTDEDIKTYCGGRTDSGVHAFGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V+ +N +L IS+L + V +FHARFSAI R Y Y I ++ Sbjct: 64 VHFETYKIRKDVVWVSGVNHFL--PKDISVLWVKPVSHRFHARFSAISRHYRYLIFNKEI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSF 180 A+ + I K LD ++M AAQ L+G +D +F S ++ S R I + +V F Sbjct: 122 RPAIFRSNVLHISKKLDYKDMNKAAQCLLGENDLISFISFDRRSFRSTKRNIRYINVKRF 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + I +VA SF + +R+ VGSL VG GK + ++K + +DR + GP +GLY Sbjct: 182 DSYVIIDIVANSFAYNMVRNIVGSLIEVGLGKKGTEWIKKLIDLKDRTKSGPKVHSKGLY 241 Query: 241 FDSVEYS 247 + YS Sbjct: 242 LMHINYS 248 >gi|322514646|ref|ZP_08067676.1| tRNA pseudouridine synthase A [Actinobacillus ureae ATCC 25976] gi|322119437|gb|EFX91539.1| tRNA pseudouridine synthase A [Actinobacillus ureae ATCC 25976] Length = 289 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 135/257 (52%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V V AGRTDSGVH QV Sbjct: 28 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSVVANAPVEAFCAGRTDSGVHGTGQV 87 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HF+ ++ W C NA L + I++ V + FHARFSA R Y Y I Sbjct: 88 VHFETETVRPLQSW-----CFGTNANL--PNDIAVKWAVEVSEDFHARFSATARRYRYII 140 Query: 117 ITRQAPLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 K R+ ++PK LD + M A Q L+G +DF++FR+ C++ +P Sbjct: 141 FN-------NKLRSAILPKGVSHYHHELDHQKMHEAGQFLLGENDFSSFRAAKCESHTPW 193 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R I H +V+ GN I + + A +F+H +R+ VGSL VG G+ ++ L +DR Sbjct: 194 RNIHHLNVSRLGNYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTL 253 Query: 230 CGPLAPPEGLYFDSVEY 246 P A EGLY V Y Sbjct: 254 AAPTAKAEGLYLVDVHY 270 >gi|325678788|ref|ZP_08158386.1| tRNA pseudouridine synthase A [Ruminococcus albus 8] gi|324109292|gb|EGC03510.1| tRNA pseudouridine synthase A [Ruminococcus albus 8] Length = 250 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 127/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+GSGY GWQRQ N ++Q +E AIF +TGE VVV G RTD+GVHA Sbjct: 1 MRNFKVTLAYDGSGYHGWQRQSNALAVQEVVENAIFKLTGEKVVVQGCSRTDAGVHARMY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +L P + LN++L D IS++ + FHAR+ + Y Y + + Sbjct: 61 VLSMELESTITPRGIQLGLNSWL--PDDISVIGCEECEAGFHARYHCKGKEYEYIVHNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K A+ +D + AA+ VG HDF F S C +RTI FDV Sbjct: 119 IKDPFLKNTAFRNTYPIDEVLLDKAAKDYVGEHDFKAFCSTACDKEITVRTIYRFDVRRE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+ V FL+ +R VG+L + +GK + + + ++++DR + G PP+GLY Sbjct: 179 GELVIFTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRIIESKDRTKAGKTVPPQGLY 238 Query: 241 FDSVEYS 247 + V Y Sbjct: 239 LNKVYYD 245 >gi|171463727|ref|YP_001797840.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226708657|sp|B1XV49|TRUA_POLNS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171193265|gb|ACB44226.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 276 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 12/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG------AGRTDSGV 55 +R + ++Y+GS Y GWQ Q N +++Q +EKAI GE V AGRTD+GV Sbjct: 1 MRIALGLQYDGSPYSGWQTQVNHNTVQNELEKAISAFVGEQACVVKPINTITAGRTDTGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HAL QV HFD E + +N++L S +I I V ++F ARFSA R Y+Y Sbjct: 61 HALGQVVHFDTNVEREDFSWVRGVNSFL--SSSIVINWAKPVSEEFCARFSAYEREYIYA 118 Query: 116 IITR--QAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 + ++P+A + ++P S D E M+ +A+ L+G HDF++FRS CQ+ +PI+T Sbjct: 119 LHAGPCRSPMAHSRAGYLMLPPSQWFDIEAMQKSAECLIGEHDFSSFRSSECQSKTPIKT 178 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I ++ S + R+ +FLH IR+ VG +G GK TS + + L A++R+ Sbjct: 179 IYLIEIISKQPWLYFRIRGNAFLHHMIRNLVGCFLQIGQGKQTSQWMAEVLAAKNRQIAA 238 Query: 232 PLAPPEGLYFDSVEY 246 P +GLY + Y Sbjct: 239 PTFMADGLYLAKITY 253 >gi|260856362|ref|YP_003230253.1| pseudouridylate synthase I [Escherichia coli O26:H11 str. 11368] gi|257755011|dbj|BAI26513.1| pseudouridylate synthase I [Escherichia coli O26:H11 str. 11368] gi|323156469|gb|EFZ42624.1| tRNA pseudouridine synthase A [Escherichia coli EPECa14] Length = 270 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV HF+ Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V FHARFSA R Y Y I R P L Sbjct: 76 AQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 KG + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 134 KGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVMRHGPYVVV 192 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTRAAATAKAEGLYLVAVDY 252 >gi|306825673|ref|ZP_07459012.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432034|gb|EFM35011.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 261 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 134/251 (53%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + L G + VHGAGRTDSGVHAL Sbjct: 13 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGHAITVHGAGRTDSGVHALG 72 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL+ + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 73 QVIHFDLLYQMDEEKLRFALDT--QSPEDIDVISMELVADDFHCRYAKHSKTYEF-IVDR 129 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFD 176 P + + A P LD E M++A + L G HDFT F + +RTI + Sbjct: 130 GRPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEANLT 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 190 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 249 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 250 NGLYLKEIRYE 260 >gi|254514517|ref|ZP_05126578.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR5-3] gi|219676760|gb|EED33125.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR5-3] Length = 272 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 136/252 (53%), Gaps = 15/252 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 R + IEY+GS Y GWQ Q ++Q +E A+ + V V AGRTD+GVHA Sbjct: 7 RVALKIEYDGSAYSGWQSQPQLPKVRTVQTEVEVALSKIANSPVRVFCAGRTDTGVHAAA 66 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 Q HFD ++ W+ V L ++++D +S V + FHAR SA+ R Y Y Sbjct: 67 QWLHFDAPCDRSLKAWI-VGANAQLPLDVRLTDGLS------VAEDFHARHSAVARQYDY 119 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I + P AL R + + LD MR + Q L+G DF+ FR+ CQ+++P+R ++ Sbjct: 120 LIANTRTPSALLANRMVWVRQPLDANLMRCSLQALLGEQDFSAFRAASCQSTTPMRFMES 179 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G++I+IRVVA +FLH +R+ VGS VG + + L + L +DR + A Sbjct: 180 TQVFRRGDIIQIRVVANAFLHHMVRNIVGSCLQVGLCEQPAGWLGELLAGRDRTQAAATA 239 Query: 235 PPEGLYFDSVEY 246 PP+GLY V Y Sbjct: 240 PPQGLYLTGVRY 251 >gi|56708110|ref|YP_170006.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110670581|ref|YP_667138.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC198] gi|224457202|ref|ZP_03665675.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|254370594|ref|ZP_04986599.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC033] gi|254874909|ref|ZP_05247619.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|62901197|sp|Q5NG36|TRUA_FRATT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123169371|sp|Q14HI8|TRUA_FRAT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56604602|emb|CAG45654.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320914|emb|CAL09037.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC198] gi|151568837|gb|EDN34491.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC033] gi|254840908|gb|EET19344.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|282159310|gb|ADA78701.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis NE061598] Length = 258 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|262375036|ref|ZP_06068270.1| tRNA pseudouridine synthase A [Acinetobacter lwoffii SH145] gi|262310049|gb|EEY91178.1| tRNA pseudouridine synthase A [Acinetobacter lwoffii SH145] Length = 265 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + IE+ G Y GWQ Q+ G +S+Q +IEK + V + + +HGAGRTD+GVHA Sbjct: 1 MQRFAVGIEFCGMHYRGWQTQQPGVASVQETIEKVLSKVADQPISLHGAGRTDAGVHATN 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + C + ++ ISI + +D FHARF A R Y Y Sbjct: 61 MVAHFDTDAVRSERGWL--MGCNS-----QLPKDISIQWIKEMDHSFHARFKAQARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + + LD E M AA+ G H+F +FR+ CQ++ P+R + H Sbjct: 114 VVYNHPVRPALLHKQVTHVYAPLDVEQMIYAAKKFEGTHNFESFRAAACQSNQPVRHVSH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + + ++ A+DRK G A Sbjct: 174 CRLIQHGQYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYAADHIDNIFAAEDRKAAGVTA 233 Query: 235 PPEGLYFDSVEY 246 P +GLYF +Y Sbjct: 234 PADGLYFIHADY 245 >gi|297623065|ref|YP_003704499.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093] gi|297164245|gb|ADI13956.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093] Length = 260 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 137/255 (53%), Gaps = 13/255 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + +E++G+ +FGWQ Q + ++QG +E A+ + G H AGRTD+GVH Sbjct: 1 MRRIKLTLEFDGTDFFGWQVQAGAAHPVRTVQGVLEAALATLPGARPKAHAAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL VAH+D + +PV + ALNA ++ + +L+ V + F A+FS R YLYR Sbjct: 61 ALAMVAHYD-TDDRIPVAKVPAALNA--RLPPDVRVLHAEEVPRSFEAQFSCCYRRYLYR 117 Query: 116 ---IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + +A ALE+ R +P +LD E M+ AA G DF + + + +RT+ Sbjct: 118 MRLLRASRAGSALERRRVLFVPGALDLEAMQRAAPRFEGTRDFAALATQESRTT--VRTV 175 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + + G + + + A FL +R+ VG+L VG+GK D+ L A+DR+ GP Sbjct: 176 YRCRLGAAGPDLTLDIAADGFLRNMVRAVVGTLLWVGEGKLAPEDVSALLAARDRRRAGP 235 Query: 233 LAPPEGLYFDSVEYS 247 APP GLYF Y Sbjct: 236 NAPPHGLYFAEAGYE 250 >gi|254374311|ref|ZP_04989793.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548] gi|151572031|gb|EDN37685.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548] Length = 258 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PKDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|153874369|ref|ZP_02002618.1| tRNA pseudouridine synthase A [Beggiatoa sp. PS] gi|152069168|gb|EDN67383.1| tRNA pseudouridine synthase A [Beggiatoa sp. PS] Length = 272 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 133/255 (52%), Gaps = 22/255 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ +FGWQ Q + S+QG +E A+ V V V AGRTD+GVHA+ QV Sbjct: 1 MRIALGVEYNGANFFGWQFQPHARSVQGEVEIALSKVANHPVKVICAGRTDTGVHAIGQV 60 Query: 62 AHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 H D+ R WV N+ L I +S+L VD FHARFSA R Y Y I Sbjct: 61 IHADVTVQRSTRSWV-----LGTNSNLPID--VSMLWAQSVDNNFHARFSAQARHYRYII 113 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + R P L K W + L+ E M+IA +L+G HDF + +PIRTI Sbjct: 114 LNRPTRPALLTKQVTWE-RRILEVERMQIAGNYLIGTHDFHLIVPFPVKQKTPIRTISRL 172 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG----KWTSTDLEKALQAQDRKECG 231 V+ + + I + A +FLH +R+ G L +G G KW T LE AQDR G Sbjct: 173 MVSRMDDRVIIDISANAFLHHMVRNIAGVLITIGAGEKRPKWADTVLE----AQDRTMGG 228 Query: 232 PLAPPEGLYFDSVEY 246 AP GLYF ++Y Sbjct: 229 ITAPAAGLYFCGIDY 243 >gi|253577209|ref|ZP_04854529.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786 str. D14] gi|251843453|gb|EES71481.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786 str. D14] Length = 261 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/263 (36%), Positives = 138/263 (52%), Gaps = 26/263 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ YFG+Q Q G+++Q IE AI +TGE V +HG+GRTD+GVHA +Q Sbjct: 1 MRNLLMTVSYDGTNYFGFQTQPGGNTVQDHIEGAIRQLTGETVKIHGSGRTDAGVHARQQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HF V W C ALNA ++ I +L V FH+R SA R++Y Y Sbjct: 61 PFHFHTDSRIPVERW-----CLALNA--RLPSDIRVLTAREVPLTFHSRHSAKRKTYRYT 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I T + P ++ + P L+ + M+ + +LVG HDFT+F S S +RTI + Sbjct: 114 INTNRFPDVFQRNYQFHHPGQLNVDAMQASLPYLVGTHDFTSFASRQSTKLSHVRTI--Y 171 Query: 176 D----VNSFGN--------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 D V+S ++ V FL +R VG+L +G+GK T ++ L+ Sbjct: 172 DARIVVDSLAKIPGTTGQGIVHFYVTGSGFLQHMVRIIVGTLIEIGEGKRTPESIQAILE 231 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A+DR GP A +GL SVEY Sbjct: 232 AKDRTAAGPTAESKGLMLWSVEY 254 >gi|172056172|ref|YP_001812632.1| tRNA pseudouridine synthase A [Exiguobacterium sibiricum 255-15] gi|229470753|sp|B1YH83|TRUA_EXIS2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171988693|gb|ACB59615.1| tRNA pseudouridine synthase A [Exiguobacterium sibiricum 255-15] Length = 249 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+Y+G+ Y G+Q Q NG +IQ +EK + + V V G+GRTD+ VHA Q Sbjct: 1 MRRFKCTIQYDGTDYSGYQVQPNGLTIQEVLEKTLGRMHKHPVKVIGSGRTDARVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P + KALN L D I + + V F AR+ + + Y Y R+ Sbjct: 61 VIHFDTELSIAPASMVKALNTLL--PDDIRVRDCKEVASDFEARYDVVGKEYRY--FVRR 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + ++ LIP SLD +R+ HLVG HDF++F + + +RTI ++ Sbjct: 117 TENAFRRHQSVLIPYSLDVAQIRLGLAHLVGTHDFSSFCVAKTETDNRVRTIYEAELIEQ 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + R FL+ QIR VG+L VG G++ D+++ L+A+DR G APP GLY Sbjct: 177 GEELIFRFQGSGFLYNQIRIMVGTLLDVGRGRFAPDDIKRMLEAKDRNVAGVTAPPHGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LWEVFY 242 >gi|149377425|ref|ZP_01895168.1| tRNA pseudouridine synthase A [Marinobacter algicola DG893] gi|149358266|gb|EDM46745.1| tRNA pseudouridine synthase A [Marinobacter algicola DG893] Length = 298 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + EY+G G+ GWQ QK+G S+QG + +A+ V V + AGRTD+GVHA Q+ Sbjct: 18 RVAIAFEYDGRGFHGWQYQKSGVRSVQGELTQAVSKVADHPVELVCAGRTDAGVHASYQI 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ P +N L + + D FHARFSA R Y Y I Sbjct: 78 AHFETPSVRNPRSWVMGINTSLPQDIAVHWAGNGVDD--FHARFSATYRRYRYVIYNHAV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G+ + LD M AAQ L G HDF++FR+ CQ+ SPIR ++ +V G Sbjct: 136 RPGILHGQVSWTFRPLDEALMHQAAQFLCGEHDFSSFRAAGCQSRSPIRFLEAIEVTRKG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V A +FLH +R+ G+L VG GK + + L+A+DR G APP GLY Sbjct: 196 DFVVIDVQANAFLHHMVRNIAGALMSVGTGKQRPEWIREILEARDRTVAGVTAPPHGLYL 255 Query: 242 DSVEY 246 V Y Sbjct: 256 VDVGY 260 >gi|328951883|ref|YP_004369217.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109] gi|328452207|gb|AEB08036.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109] Length = 267 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 137/245 (55%), Gaps = 7/245 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 C+ +EY+G+ Y GWQRQ N +IQ +E + +TG+++ +H +GRTD+GVHAL QVAHF Sbjct: 26 CLTLEYDGTAYHGWQRQANALTIQEVVETCLARLTGQVIRLHSSGRTDAGVHALGQVAHF 85 Query: 65 DLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 L +P+ + LN+ L ++IL + FHAR+SA ++Y YRI+ R Sbjct: 86 -LTTSSLPLSAFREGLNSLLP--RDLAILKVCDAPAGFHARYSATAKTYEYRILNRPVRS 142 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVNSFG 181 + W + + LD +R AA +++G DF F++ + R + ++ G Sbjct: 143 PVHCNYCWWLARPLDQGLLRQAAGYILGEQDFAAFQASGGSVKTTTRKVMAASWEEKPGG 202 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I ++ A FL +R+ VG++ VG GK + DL++ L A+DR++ GP AP GLY Sbjct: 203 WRI-FQITANGFLRGMVRALVGTMVEVGWGKRSPGDLKRLLAARDRRQAGPTAPAAGLYL 261 Query: 242 DSVEY 246 V Y Sbjct: 262 VEVRY 266 >gi|253689176|ref|YP_003018366.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755754|gb|ACT13830.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 283 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 23 LKIALGIEYDGSQYYGWQRQSDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQV 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +NA L I++ + V++ FHARFSA R Y Y I R Sbjct: 83 VHFTTQAIRKDAAWTMGVNANL--PPDIAVRWVKTVEEDFHARFSATARRYRYVIYNHRY 140 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L G LD + M A Q L+G +DFT+FR++ CQ+ +P R ++H V Sbjct: 141 RPAVLSHGMTHFY-HPLDVDRMERAGQCLLGENDFTSFRAVQCQSRTPWRYVNHLKVTRH 199 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 200 GDYIVVDIKANAFVHHMVRNIVGSLMEVGCGNRPESWIAELLAAKDRTLAAATARAEGLY 259 Query: 241 FDSVEY 246 +V+Y Sbjct: 260 LVAVDY 265 >gi|225025215|ref|ZP_03714407.1| hypothetical protein EIKCOROL_02112 [Eikenella corrodens ATCC 23834] gi|224941973|gb|EEG23182.1| hypothetical protein EIKCOROL_02112 [Eikenella corrodens ATCC 23834] Length = 269 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 132/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+GS +FGWQ+Q +G +++Q ++E A+ + E + V AGRTD+GVHA QV Sbjct: 8 RRALFVSYDGSRFFGWQKQADGIATVQSALEAALSELAQERISVVTAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA L + +++ + V +FHARF A R Y Y + + Sbjct: 68 VHFDSAARRPDQAWVRGVNALLP--EGVAVWRVQDVAPEFHARFDACGRRYRYLLQSAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L GRA +LD MR AA LVG HDF++FR+ CQA SP++T+ + Sbjct: 126 RSPLLVGRAGWTHYALDMAAMRQAAALLVGEHDFSSFRAAECQAKSPVKTLYRVALCGTP 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + +FLH +R+ +G+L VG GK + L A+ RK P P+GLY Sbjct: 186 ELMAVDFHGNAFLHHMVRNLMGALVYVGCGKLSVDGFAGLLAARSRKLAPPTFMPDGLYL 245 Query: 242 DSVEY 246 ++Y Sbjct: 246 TGIDY 250 >gi|313669058|ref|YP_004049342.1| tRNA pseudouridine synthase [Neisseria lactamica ST-640] gi|313006520|emb|CBN87984.1| tRNA pseudouridine synthase [Neisseria lactamica 020-06] Length = 267 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 10 RWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 70 VHFDTAARRPAQAWIRGTNAALP--EGIAVLHARQTAPGFHARFDAYGRHYRYLLESSPV 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + G Sbjct: 128 RSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQTG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 188 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSALIRERSRLKAPPTFMPDGLYL 247 Query: 242 DSVEY 246 V+Y Sbjct: 248 TGVDY 252 >gi|148986314|ref|ZP_01819186.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71] gi|147921782|gb|EDK72913.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71] gi|301800423|emb|CBW33056.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae OXC141] Length = 249 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+++ VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQVITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|85860424|ref|YP_462626.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] gi|85723515|gb|ABC78458.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] Length = 328 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 133/246 (54%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++Y + +EY+G+GY GWQ QKN SIQG++ + + G V + GAGRTD+GVHAL QV Sbjct: 65 VKYRLTLEYDGTGYSGWQMQKNAKSIQGTLLRVAEDLLGGPVDIQGAGRTDAGVHALAQV 124 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH + R P L + LN L S I+IL + FHAR SA RSYLY I + Sbjct: 125 AHLETTRRMPPRKLLEGLNDALPSS--INILRVEEAPPLFHARHSAQLRSYLYVISGHRT 182 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT-IDHFDVNSF 180 A K W I L+ + M+ A++ G HDF++F +P R ++ ++++ Sbjct: 183 --AFGKRYVWWIRDHLELKKMQAASRLFAGFHDFSSFADKRMDKQAPTRVKVEATELHAS 240 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI RV FL +R VG + VG K +D+ + L++ + APP GLY Sbjct: 241 GDLIFFRVTGSHFLWKMVRRMVGVMVEVGREKLDISDVRQMLKSYSPEPARLTAPPSGLY 300 Query: 241 FDSVEY 246 + V Y Sbjct: 301 LERVLY 306 >gi|225377724|ref|ZP_03754945.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM 16841] gi|225210401|gb|EEG92755.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM 16841] Length = 245 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQ Q + G +IQG IE + + G V V G+GRTD+GVHA Sbjct: 1 MNNYKITIQYDGTRYKGWQGQNSTGLTIQGKIEAVLGQMAGHAVEVIGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + LN YL D I+++ + VD++FH+R++A +++Y Y I Sbjct: 61 QVANFHIEEHFTEGKILSYLNHYL--PDDIAVIAVEQVDERFHSRYAAKKKTYRYHIHMG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + E+ + K+LD E M+ AA +L+G HDFT+F + +RTI + Sbjct: 119 EISDVFERKYEYQYEKTLDVERMKEAASYLIGTHDFTSFCGNKKMKKTAVRTIYEINFTK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + I FL +R G+L VGDG+ +L + L++++R+ G AP GL Sbjct: 179 KGNDLWIDYRGNGFLQNMVRILTGTLIEVGDGRRAPEELPQILESKNRENAGYTAPACGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 MLMEVHY 245 >gi|309378319|emb|CBX23065.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 267 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 10 RWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 70 VHFDTAARRPAQAWIRGTNAALP--EGIAVLHARQTAPGFHARFDAYGRHYRYLLESSPV 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + G Sbjct: 128 RSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQTG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 188 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSTLIRERSRLKAPPTFMPDGLYL 247 Query: 242 DSVEY 246 V+Y Sbjct: 248 TGVDY 252 >gi|120609904|ref|YP_969582.1| tRNA pseudouridine synthase A [Acidovorax citrulli AAC00-1] gi|166228672|sp|A1TLH0|TRUA_ACIAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120588368|gb|ABM31808.1| tRNA pseudouridine synthase A [Acidovorax citrulli AAC00-1] Length = 278 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 127/258 (49%), Gaps = 20/258 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNGS Y GWQ Q G+++Q +E A+ V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGSAYRGWQSQPGGATVQDRLEAALARFATHEVSTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P + N +L I++ V + FH+R SA R Y Y ++ Sbjct: 61 VHFDTPLERTPFSWVRGTNTFLPPD--IAVQWARPVPEAFHSRASATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + +LD + MR AA+HL+G HDFT+FR+ CQA SP++T+ ++ G Sbjct: 119 RPSVEAGRVGWVFHALDGDAMRAAARHLLGEHDFTSFRASACQAKSPVKTLRRIEITQRG 178 Query: 182 N------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FLH +R+ +G L VG G+ + + LQ Sbjct: 179 TGGVPAGQAPGDRGDVPTCYWRFEFEGNAFLHHMVRNIMGCLVAVGQGQHPADWMHAVLQ 238 Query: 224 AQDRKECGPLAPPEGLYF 241 A+ R P P+GLYF Sbjct: 239 ARSRDAAAPTFSPDGLYF 256 >gi|326203861|ref|ZP_08193723.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] gi|325985959|gb|EGD46793.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] Length = 245 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 133/248 (53%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +IIEY+G+ Y GWQ QKN ++Q +++KAI + GE V V G RTD GVHA Q Sbjct: 1 MRKIKIIIEYDGTNYHGWQVQKNAKTVQETVQKAISKLLGEGVGVTGCSRTDVGVHAYGQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHF L +P A+N L D I I + V ++FHAR+S + Y Y I Sbjct: 61 VAHF-LTDSQIPGDKFSYAINNLL--PDDIVIKHSEEVSEEFHARYSTKGKKYRYLIYNA 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A+ + R+ + LD E M+ AA++ +G HDF F++ Q S +R I +V+ Sbjct: 118 PHPSAIMRNRSCHVRPVLDIEQMKKAARYFIGEHDFAAFQATGGQVRSTVREIYSMEVSG 177 Query: 180 F-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N+I I V FL+ +R G+L VG GK +++ + DR + G AP +G Sbjct: 178 KEDNMIYIEVSGNGFLYNMVRIIAGTLIYVGMGKLQESEIPGIIAGLDRTKSGKTAPAQG 237 Query: 239 LYFDSVEY 246 LY + Y Sbjct: 238 LYLMEIYY 245 >gi|208779289|ref|ZP_03246635.1| tRNA pseudouridine synthase A [Francisella novicida FTG] gi|208745089|gb|EDZ91387.1| tRNA pseudouridine synthase A [Francisella novicida FTG] Length = 258 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNDFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIYKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|254369374|ref|ZP_04985386.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp. holarctica FSC022] gi|157122324|gb|EDO66464.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp. holarctica FSC022] Length = 258 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +F + P+ + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNF-YSNAYRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNS 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 118 ATSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GL Sbjct: 178 QGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGL 237 Query: 240 YFDSVEY 246 YF VEY Sbjct: 238 YFVGVEY 244 >gi|307706977|ref|ZP_07643775.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321] gi|307617638|gb|EFN96807.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321] Length = 249 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVVSIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLR 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + +E L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIELILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|90416037|ref|ZP_01223970.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2207] gi|90332411|gb|EAS47608.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2207] Length = 285 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 138/250 (55%), Gaps = 14/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY ++ Y+GS + G+Q+QK+ S+Q +E+A+ V ++V AGRTD+ VHA QV Sbjct: 26 RYAAVVSYDGSAFCGFQKQKHSPSVQQELERALSSVANAEIIVSCAGRTDTAVHASYQVI 85 Query: 63 HFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD R WV K N+ ++ D+I++L V++ FHARFSA R+Y Y I Sbjct: 86 HFDTQALRTGRNWV-----KGSNS--QLPDSIALLWADEVNETFHARFSATSRTYRYVIH 138 Query: 118 TRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + A P L +G W + K L+ M+ A Q+L+G DF+ FR CQ+ SP R I Sbjct: 139 SAPARPAILSQGVTW-VRKPLNTAAMQEACQYLLGEQDFSAFRGAGCQSLSPNRNITSAK 197 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G LI V A +F+ +R+ +GSL VG G+ + + ++ +DR + A P Sbjct: 198 IIQAGELIVFEVTANAFVLHMVRNIIGSLMEVGFGRRDPGWIGQLIKGRDRTKSAATASP 257 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 258 KGLYLVQVGY 267 >gi|54114177|gb|AAV29722.1| NT02FT0202 [synthetic construct] Length = 258 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI Y + I Y G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MINYLLQIGYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|296136763|ref|YP_003644005.1| tRNA pseudouridine synthase A [Thiomonas intermedia K12] gi|295796885|gb|ADG31675.1| tRNA pseudouridine synthase A [Thiomonas intermedia K12] Length = 257 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 129/241 (53%), Gaps = 1/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y G+ Y GWQ Q G +Q +E+A G AGRTD+GVHAL QV H D Sbjct: 1 MGLSYGGTSYCGWQSQPGGCGVQDFLERAFAQFLGVPTRTICAGRTDAGVHALGQVVHLD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P + +NA+L D + + + F AR SA +R Y Y + AL Sbjct: 61 TPLQREPSSWVRGVNAFLP-RDMAVQWARTDLPQTFDARRSAYQRRYRYVLRNHPVRPAL 119 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + RA + LD + +R AAQ L+G HDF+ FRS CQA SP++T+ ++ +G+ + Sbjct: 120 DHARAGWTHRPLDLDLLRAAAQCLLGEHDFSAFRSSECQALSPVKTLHAIEIARYGHTLV 179 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + A +FLH +R+ VGSL VG+G + L + L ++DR+ P P+GLYF + Sbjct: 180 FDLRANAFLHHMVRNIVGSLLAVGNGSKPVSWLAEVLASRDRRLAAPTFMPDGLYFLGPD 239 Query: 246 Y 246 Y Sbjct: 240 Y 240 >gi|307709543|ref|ZP_07645997.1| tRNA pseudouridine synthase A [Streptococcus mitis SK564] gi|307619674|gb|EFN98796.1| tRNA pseudouridine synthase A [Streptococcus mitis SK564] Length = 249 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLAYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLR 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|311105424|ref|YP_003978277.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans A8] gi|310760113|gb|ADP15562.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans A8] Length = 269 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/253 (35%), Positives = 136/253 (53%), Gaps = 14/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q + ++Q ++E A+ F V AGRTD+GVH Sbjct: 1 MSRVALGLAYDGSAWQGWQTQPHRQTVQDTLEAALGSFCGVKGPVATICAGRTDTGVHGA 60 Query: 59 RQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 QV H D + WV + +NA+L S IS+ V +FHARFSA R+Y+ Sbjct: 61 MQVVHLDTELDRRMESWV-----RGVNAFLPSS--ISVQWAQPVSDEFHARFSARARTYV 113 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + + AL GRA + LD + MR AA L+G HDF++FRS CQA P+R + Sbjct: 114 YLLWRGRVRPALWAGRAGWCFQPLDVDAMRTAANALLGEHDFSSFRSSQCQAKHPVRHLY 173 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 D++ G + + A +FLH +R+ +G+L +G G+ + + L +DRK P Sbjct: 174 RLDIDERGPFLVFTLKANAFLHHMVRNIMGALLQIGQGREPVDWMAQLLSWRDRKLGAPT 233 Query: 234 APPEGLYFDSVEY 246 P+GLY +++Y Sbjct: 234 FAPDGLYLSAIDY 246 >gi|319942390|ref|ZP_08016704.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B] gi|319804078|gb|EFW00986.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B] Length = 269 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY G+ + GWQ Q + S+Q ++E A+ + V AGRTD+GVHA QV F V Sbjct: 15 IEYRGTAFNGWQVQPDHPSVQAALEAALSQFADHPISVICAGRTDTGVHATHQVVSFTSV 74 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + +NA L +++++ + VD++FHARFSA R+Y Y I L + Sbjct: 75 ARRPSAGWIRGVNAILP--ESVAVRWMREVDEKFHARFSARSRTYEYWIWNDPVRSPLFE 132 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 G A + + LD M+ A L+G HDFT+FR+ CQA +P+RTI + G L+ +R Sbjct: 133 GSAGWVFRPLDEALMQRGATALIGEHDFTSFRASECQAKTPVRTISELKIVRRGALVGVR 192 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +FL +R+ VG+L VG G+ + + L A+ R P P GLY V Y Sbjct: 193 ITANAFLQHMVRNIVGALIYVGTGRERPEWIAEVLAAKSRDAAAPTFSPAGLYLTGVGY 251 >gi|153007028|ref|YP_001381353.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. Fw109-5] gi|152030601|gb|ABS28369.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. Fw109-5] Length = 245 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY+G+ Y GWQ Q NG SIQ +E+A+ + E V AGRTD+GVHA QV F Sbjct: 6 LVLEYDGTRYVGWQVQPNGPSIQAEVERALATLHKEPRRVTAAGRTDAGVHARGQVVSFP 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 R K +NA L D +++ S+ F AR SA + Y Y + + L Sbjct: 66 EARPLPLAAYVKGMNALL--PDEVAVRAASVEPDGFDARRSARGKRYRYVLENLETRAPL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGNLI 184 + +AW + +LD MR A++HL+GR DF F++ C +R + DV + Sbjct: 124 SRLQAWQLFGALDVGAMREASRHLLGRQDFAAFQAADCACDHAVREVHRLDVLGEPSGRV 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E+ V A +F+ +R+FVG+L VG G+ + D+ + ++DR G APP+GL+ + V Sbjct: 184 ELVVEATAFVKHMVRNFVGTLVEVGKGRRRAEDMPALVASRDRTRAGRTAPPQGLFLEEV 243 Query: 245 EY 246 Y Sbjct: 244 FY 245 >gi|269468479|gb|EEZ80140.1| pseudouridylate synthase [uncultured SUP05 cluster bacterium] Length = 247 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 13/246 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E+A+ V V V +GRTD+GVHAL Q Sbjct: 1 MKLALGVEYLGTNFHGWQLQKSGIRTVQQVVEQALSSVADHPVRVFCSGRTDAGVHALEQ 60 Query: 61 VAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HF+ + WV L + + ++ V+ FHARF A R Y Y+ Sbjct: 61 VIHFETTAKREDKAWV-------LGGNVNLPFDVNFKWAKQVNDDFHARFDAHARQYHYK 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I A++ ++LD + M AA+ L+G HDF++FR CQA SPI+T++ Sbjct: 114 IHNTPVRSAVKHAYTLWESRTLDIKLMNQAAECLIGEHDFSSFRGSLCQAKSPIKTVEFI 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + GN I + + A +FLH +R+ VG+L VG G+ S ++ L A+DRK+ G A Sbjct: 174 RLTQSGNGILLDIKANAFLHHMVRNIVGTLIKVGKGEQDSAWVKTVLDAKDRKQAGVTAE 233 Query: 236 PEGLYF 241 P+GLYF Sbjct: 234 PQGLYF 239 >gi|104780847|ref|YP_607345.1| tRNA pseudouridine synthase A [Pseudomonas entomophila L48] gi|95109834|emb|CAK14539.1| tRNA-pseudouridine synthase I [Pseudomonas entomophila L48] Length = 284 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 132/253 (52%), Gaps = 19/253 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G S+Q ++E+A+ V E + V AGRTD+GVH Q+ Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSTVANEPITVVCAGRTDAGVHGCGQI 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R W L + IS++ + + FHARF A R Y Y I Sbjct: 78 VHFDTRAVRDERAWT-------LGTNFNLPHDISVVWSAPMPAHFHARFKATARRYRYVI 130 Query: 117 IT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R A LA E W + LD M AA++L+G HDF+ FR+ CQA SPI+ I Sbjct: 131 YNDPIRPAHLAEEV--TW-NHRPLDVTRMAEAARYLLGTHDFSAFRASQCQAKSPIKHIH 187 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 H V G +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G Sbjct: 188 HLRVTRHGQMIVLDVRATAFLHHMVRNIAGVLMTIGAGERPVEWAREVLEGRNRREGGVT 247 Query: 234 APPEGLYFDSVEY 246 A P GLY VEY Sbjct: 248 AHPYGLYLVQVEY 260 >gi|160894208|ref|ZP_02074986.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50] gi|156864241|gb|EDO57672.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50] Length = 273 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +I Y+G+ Y GW+ +K+ +IQG IE + L+ GE V ++GAGRTD+GVHA Sbjct: 25 MQNYRFLIAYDGTRYHGWEHKKDVVTIQGKIESVLSLMAGEEVRINGAGRTDAGVHARAM 84 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA + + P + +N YL D I IL ++ ++FHARF+A + Y Y I + Sbjct: 85 VASGPVPTDKTPEEIRDYMNHYL--PDDICILEVTPAAERFHARFNAKGKHYRYTIYRGR 142 Query: 121 APLALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ W + + ++DCE MR AA +LVG HDF +F S +R + D+ Sbjct: 143 LKPVFDRKYVWTLDEGETIDCERMRKAAAYLVGEHDFKSFCGNKQMKKSTVRKLFAIDIK 202 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + FL +R G+L VG G+ +E+ L + R+ GP APP+G Sbjct: 203 EDGDYVILDFYGAGFLQNMVRILTGTLVEVGAGRMEPAYMEEVLTGRCRQLAGPTAPPQG 262 Query: 239 LYFDSVEYS 247 L V+Y Sbjct: 263 LCLMQVDYE 271 >gi|313891575|ref|ZP_07825185.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|313120034|gb|EFR43216.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] Length = 244 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MIIEY+G+ Y GWQ+QK+ ++QG IEKA VTGE V + GAGRTDSGVHA Q Sbjct: 1 MNYKMIIEYDGTRYEGWQKQKHSDETLQGKIEKAFEKVTGENVQIIGAGRTDSGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + L + L LN L D I I + V+++FH+RF A + Y Y + Sbjct: 61 VVNVHLPYDLNAENLKNELNEIL--PDDIYIKQCTEVEEKFHSRFHAKSKIYEYNLRIGS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +K W K L E M+ AA+ L G HDFT F + S +RT+ ++++ Sbjct: 119 NKDVFQKRFIWQFAKPLCIEKMKRAAEILQGTHDFTAFCNNKNFKKSAVRTVYSIEISTS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ +R FL IR VG+L VG+ K + L L+++ R G APP+GL Sbjct: 179 NDILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQRSNAGFTAPPQGLT 238 Query: 241 FDSVEY 246 SV+Y Sbjct: 239 LISVQY 244 >gi|331266815|ref|YP_004326445.1| tRNA pseudouridine synthase A [Streptococcus oralis Uo5] gi|326683487|emb|CBZ01105.1| tRNA pseudouridine synthase A [Streptococcus oralis Uo5] Length = 249 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++ + IV FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVILIEIVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P L + A P LD E M++A + L G HDFT F + +RTI Sbjct: 118 GRPKNPLRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLS 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNDRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|167032538|ref|YP_001667769.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1] gi|166859026|gb|ABY97433.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1] Length = 286 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 130/251 (51%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ +G S+Q ++E+A+ V E + V AGRTD+GVH Q+ Sbjct: 20 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQI 79 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R W + + IS++ + FHARF A R Y Y I Sbjct: 80 VHFDTRAVRDERAWT-------MGTNFNLPHDISVVWSQPMPADFHARFKACARRYRYVI 132 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P L + W + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H Sbjct: 133 YNDPIRPAHLAEEVTW-NHRPLDVERMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIYHL 191 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I + V A +FLH +R+ G L +G G+ T + L+ ++R+E G A Sbjct: 192 RVTRHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVTWAREVLEGRNRREGGVTAH 251 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 252 PYGLYLVQVEY 262 >gi|298373324|ref|ZP_06983313.1| tRNA pseudouridine synthase A [Bacteroidetes oral taxon 274 str. F0058] gi|298274376|gb|EFI15928.1| tRNA pseudouridine synthase A [Bacteroidetes oral taxon 274 str. F0058] Length = 247 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG+ Y GWQ Q N ++Q ++ +A+ +V G V + GAGRTD+GVHA Sbjct: 1 MRYFIYIAYNGTNYHGWQIQPNAVTVQETVGQAMSVVLGSNVEITGAGRTDTGVHARTMT 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFDL + L K LN+ L I++ + V + HARFSA+ R+Y Y + + Sbjct: 61 AHFDLTKRIDEANLVKRLNSLLPAD--IAVYKIVEVIPEAHARFSAMSRTYEYLLYLDKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +G A+ + LD E M IAA + DFT+F +H + T+ + + Sbjct: 119 PFL--RGLAYRHYRDLDFEKMNIAANKMRDYTDFTSFAKLHTDTRTNNCTVSKAEWHKQD 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+ +VA FL +R+ VG+L LVG+G+ T D + ++A+DR++ G +GLY Sbjct: 177 NIWIFTIVADRFLRDMVRATVGTLILVGEGRITVDDFCRIIEAKDRQKAGQSIDAQGLYL 236 Query: 242 DSVEY 246 ++Y Sbjct: 237 TDIQY 241 >gi|322374222|ref|ZP_08048755.1| tRNA pseudouridine synthase A [Streptococcus sp. C150] gi|321276927|gb|EFX53999.1| tRNA pseudouridine synthase A [Streptococcus sp. C150] Length = 248 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+QRQ + SIQ IEK + L +G VVVHGAGRTD+GVHA Sbjct: 1 MVRYKAIISYDGTLFSGFQRQPDARSIQEEIEKTLLRLNSGTPVVVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V + FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEDFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P L M+ AA+ LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKVRTITQARVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPISQVKTVLESCDRNLAGPTASGN 238 Query: 238 GLYFDSVEY 246 GLY ++Y Sbjct: 239 GLYLKEIKY 247 >gi|254673733|emb|CBA09384.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha275] Length = 266 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 6/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 8 RWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQV 67 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD VR I + + K + +L+ V +FHARF A R Y Y + + Sbjct: 68 VHFDTTAVRPQQAWIRGRKMPTCPK---ALPVLHARQVALEFHARFDAYGRHYRYLLESS 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L K RA LD MR AA +L+G DF++FR+ CQA SPI+TI ++ Sbjct: 125 PVRSPLLKNRAGWTHLKLDIGPMRQAATYLIGEQDFSSFRAAECQAKSPIKTIYRANLTQ 184 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GL Sbjct: 185 SAGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGL 244 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 245 YLTGVDY 251 >gi|126667385|ref|ZP_01738357.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17] gi|126628141|gb|EAZ98766.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17] Length = 303 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++ EY+G + GWQ+QK+G ++Q + KA V V + AGRTD+GVHA Q+ Sbjct: 18 RVALVFEYDGREFHGWQQQKSGIRAVQQQLAKAASKVADHDVELVCAGRTDAGVHASYQL 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD +R WV +N L IS+ FHARFSA+ R Y Y I Sbjct: 78 VHFDTPSLRTMRSWV-----MGINTALPFD--ISVRWAGQCQGDFHARFSAVYRRYRYII 130 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +++G+ + L+ ENM AAQ LVG HDF+ FR+ CQ+ SPIR + Sbjct: 131 YNNPVRPGIQRGQVSWNFRPLNAENMHQAAQALVGEHDFSAFRAAGCQSHSPIRFLQSIS 190 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ + I V A +FLH +R+ G+L VG + + + L +DR++ G APP Sbjct: 191 VTRKGDYLVIDVQANAFLHHMVRNIAGALMAVGCQEQAPDWIGQILATKDRRQAGVTAPP 250 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 251 DGLYLVDVGY 260 >gi|255067233|ref|ZP_05319088.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256] gi|255048601|gb|EET44065.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256] Length = 272 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 135/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q +G ++Q +E A+ + GE + AGRTD+GVHA QV Sbjct: 15 RWALTLSYDGSRFYGWQKQADGLPTVQTVLESALSQIAGETIRTIVAGRTDTGVHATAQV 74 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NAYL + +++L V FHARF A R Y Y + + Sbjct: 75 VHFDTQVARPEQAWVRGVNAYLP--EGVAVLFAQQVAPHFHARFDAYGRRYRYLLESSPV 132 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +G+ LD E M+ AA L G HDF++FR++ CQA SP++T+ ++ Sbjct: 133 RSPILQGKVGWTHLKLDPEKMQQAALLLEGEHDFSSFRAVECQAKSPVKTLYSAKISGTP 192 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + +FLH +R+ +G+L VG G+ + + + ++ + R + P P+GLY Sbjct: 193 QFLKLDLHGNAFLHHMVRNIMGALVYVGSGRLSISGFQDLIEERSRLKAPPTFMPDGLYL 252 Query: 242 DSVEY 246 V+Y Sbjct: 253 TGVDY 257 >gi|290475958|ref|YP_003468853.1| pseudouridylate synthase I [Xenorhabdus bovienii SS-2004] gi|289175286|emb|CBJ82089.1| pseudouridylate synthase I [Xenorhabdus bovienii SS-2004] Length = 279 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 137/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 16 VKIALGIEYDGSRYYGWQRQQEVKSVQECLEKALSKVADEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF + +N++L I++ + VD +FHARFSA R Y Y I R Sbjct: 76 VHFKTSAQRKDAAWTMGVNSHL--PPDIAVRWVKTVDDEFHARFSATARRYRYIIFNHRY 133 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L +G LD M AAQ L+G +DFT+FR++ CQ++SP R + H +V+ Sbjct: 134 RPAVLAQGVTHF-HYLLDERKMHEAAQSLLGENDFTSFRAVQCQSNSPWRNMMHINVSRH 192 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + + A +F+H +R+ VGSL +G + + L +DR + A EGLY Sbjct: 193 GHYVVVDIKANAFVHHMVRNIVGSLLEIGCSNQDIGWMAELLALKDRTKAAATAKAEGLY 252 Query: 241 FDSVEY 246 +V+Y Sbjct: 253 LVAVDY 258 >gi|255321215|ref|ZP_05362381.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SK82] gi|262380100|ref|ZP_06073255.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SH164] gi|255301769|gb|EET81020.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SK82] gi|262298294|gb|EEY86208.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SH164] Length = 265 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 134/252 (53%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G Y GWQ Q+ G S+Q ++E+ + + E +++HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFCGIRYRGWQTQQAGVPSVQETLERVLSKIADEKIILHGAGRTDAGVHATN 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + + ++ I++ L + + FHARF A R Y Y Sbjct: 61 MVAHFDTHAIRTERGWM-------MGSNSQLPKDIALQWLQPMGEDFHARFKACARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I AL + + + LD E M+ AA+ G H+F +FR+ CQ++ PIR + H Sbjct: 114 VIYNAPYRPALLHKQVTHVYQQLDIEKMKKAAKKFRGVHNFESFRAAACQSNQPIRDVTH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ G + + + A FLH +R+ VG L VG G + ++ A+DR+ G A Sbjct: 174 CELFEHGRYLVLDIQANGFLHHMVRNIVGCLLEVGQGMYDIGHIDSIFAAEDRRAAGMTA 233 Query: 235 PPEGLYFDSVEY 246 P +GLYF Y Sbjct: 234 PADGLYFIQAYY 245 >gi|317492661|ref|ZP_07951088.1| tRNA pseudouridine synthase A [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919411|gb|EFV40743.1| tRNA pseudouridine synthase A [Enterobacteriaceae bacterium 9_2_54FAA] Length = 285 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y GWQRQ + S+Q +EKA+ V E + V AGRTD+GVHA QV HF+ Sbjct: 31 IEYDGSQYAGWQRQSDAPSVQECLEKALSKVACEPITVSCAGRTDAGVHATGQVVHFETH 90 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 +N ++ I++ + V + FHARFSA R Y Y I + A+ + Sbjct: 91 VARKDAAWTMGVNTHMP--KDIAVRWVKSVSEDFHARFSATARRYRYVIYNHRYRQAVLQ 148 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 LD E M A Q L+G +DFT+FR+ CQ+ +P R + H V G+ + + Sbjct: 149 NGLTHFYHHLDAERMERAGQALLGENDFTSFRASQCQSRTPWRNVSHLKVTRLGDYVIVD 208 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL +G G + + + L A+DRK A GLY SV+Y Sbjct: 209 IKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRKLAAATAKAAGLYLVSVDY 267 >gi|266623132|ref|ZP_06116067.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] gi|288865107|gb|EFC97405.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] Length = 404 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y ++++Y+GS Y GWQ+Q N G++IQG +E + +TG V VHG+GRTD+GVHAL Q A Sbjct: 159 YKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGILLKLTGRPVEVHGSGRTDAGVHALAQTA 218 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + N YL + I++L++ V +FH+R +A++++YLYRI Sbjct: 219 NFHADTGMTEDQIRAYFNQYL--PEDIAVLSVEKVQDKFHSRLNAVQKTYLYRIEMGPKK 276 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E+ + + K L + M+ AA ++G HDF +F S +RTI + G Sbjct: 277 DVFERKYCYGLGKQLSADRMKEAAACVLGEHDFKSFCGNKKMKKSTVRTISDITIEKEGT 336 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + IR FL+ +R G+L +G + + ++++ L DR+ G APPEGL+ + Sbjct: 337 KLLIRYTGNGFLYHMVRILTGTLIEIGLEERSPQEMKEILLKLDRQAAGFTAPPEGLFLE 396 Query: 243 SVEY 246 V Y Sbjct: 397 RVMY 400 >gi|89256403|ref|YP_513765.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica LVS] gi|115314847|ref|YP_763570.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica OSU18] gi|167010425|ref|ZP_02275356.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FSC200] gi|254367741|ref|ZP_04983762.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica 257] gi|122325138|sp|Q0BLV1|TRUA_FRATO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122999741|sp|Q2A3D7|TRUA_FRATH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89144234|emb|CAJ79507.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica LVS] gi|115129746|gb|ABI82933.1| tRNA-pseudouridine synthase I [Francisella tularensis subsp. holarctica OSU18] gi|134253552|gb|EBA52646.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica 257] Length = 258 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +F + P+ + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNF-YSNAYRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNS 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 118 ATSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GL Sbjct: 178 QGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGL 237 Query: 240 YFDSVEY 246 YF VEY Sbjct: 238 YFVGVEY 244 >gi|329121886|ref|ZP_08250501.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] gi|327467824|gb|EGF13316.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] Length = 244 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MIIEY+G+ Y GWQ+QK+ ++QG IEKA VTGE V + GAGRTDSGVHA Q Sbjct: 1 MNYKMIIEYDGTRYEGWQKQKHSDETLQGKIEKAFEKVTGENVQIIGAGRTDSGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ L + L LN L D I I V+++FH+RF A + Y Y + Sbjct: 61 VANVHLPYDLNAENLKNELNEIL--PDDIYIKQCIEVEEKFHSRFHAKSKIYEYNLRIGS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +K W K L E M+ AA+ L G HDFT F + S +RT+ ++++ Sbjct: 119 NKDVFQKRFIWQFAKPLCIEKMKRAAEILQGTHDFTAFCNNKHFKKSAVRTVYSIEISTS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ +R FL IR VG+L VG+ K + L L+++ R G APP+GL Sbjct: 179 NDILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQRSNAGFTAPPQGLT 238 Query: 241 FDSVEY 246 SV+Y Sbjct: 239 LISVQY 244 >gi|228477786|ref|ZP_04062414.1| tRNA pseudouridine synthase A [Streptococcus salivarius SK126] gi|228250478|gb|EEK09692.1| tRNA pseudouridine synthase A [Streptococcus salivarius SK126] Length = 248 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + L +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I ++++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDVVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L M+ AA+ LVG HDFT F + + +RTI V Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L+++DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|322377359|ref|ZP_08051850.1| tRNA pseudouridine synthase A [Streptococcus sp. M334] gi|321281559|gb|EFX58568.1| tRNA pseudouridine synthase A [Streptococcus sp. M334] Length = 249 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMSRYYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLK 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|302873576|ref|YP_003842209.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307688243|ref|ZP_07630689.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302576433|gb|ADL50445.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 245 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 136/249 (54%), Gaps = 7/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQ+ + +IQ +EK + + E V V G+GRTD+GVHA + Sbjct: 1 MNNYKLTIQYDGKNYRGWQKLSDSDKTIQSKLEKVLSTLVDEEVNVIGSGRTDAGVHARK 60 Query: 60 QVAHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+A+F ++ W V+ + Y + + I + + VD++FHAR++A ++ Y YRI Sbjct: 61 QIANFHTEKDLKWKDVLK----HCYTYLPEDIVVKSCDKVDEKFHARYNAKKKIYTYRIC 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 A E+ ++L+ K L+ + M A+++ +G HDF +F S+ + S +R I + Sbjct: 117 NSAFGDAFERKYSYLVDKKLNIDKMLAASKYFIGIHDFKSFTSMKSKKKSTVREIYDISI 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+++EI + FLH IR G+L VG GK ++ + +R + G AP Sbjct: 177 NCIGDMVEITYIGEGFLHNMIRILTGTLIEVGLGKMKIDEIPTIMDGLERSDAGFTAPAH 236 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 237 GLFLVDVIY 245 >gi|187776609|ref|ZP_02993082.1| hypothetical protein CLOSPO_00123 [Clostridium sporogenes ATCC 15579] gi|187775268|gb|EDU39070.1| hypothetical protein CLOSPO_00123 [Clostridium sporogenes ATCC 15579] Length = 246 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 134/241 (55%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QKN ++QG++EK I +T E V + GA RTDSGVHA + +F Sbjct: 8 LEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITKEKVEITGASRTDSGVHAKGYMCNFF 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P L + +N L I +L+ V +FH+RF + ++Y Y I+ + P+A+ Sbjct: 68 TNSRIPPENLQRVINNNL--PPDIVVLSSEEVSSEFHSRFCSKGKTYEYTILNKSEPIAI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + LD + M+IA+++ +G HDF+ F++ + +RTI F++N G+LI+ Sbjct: 126 GRNYVFHFKYKLDIDKMKIASKYFIGTHDFSAFQTKGSSVKTSVRTISKFEINKSGDLIK 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG+L +G K +E ++++DR++ G P GL V Sbjct: 186 FIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIEYVIKSKDRRKAGKCVPSSGLCLKEVF 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|326316049|ref|YP_004233721.1| tRNA pseudouridine synthase A [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372885|gb|ADX45154.1| tRNA pseudouridine synthase A [Acidovorax avenae subsp. avenae ATCC 19860] Length = 278 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 20/258 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNGS Y GWQ Q G+++Q +E A+ V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGSAYRGWQSQPGGATVQDRLEAALARFATHEVSTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +P + N +L I++ V + FH+R SA R Y Y ++ Sbjct: 61 VHFDTPLDRMPFSWVRGTNTFLPPD--IAVQWARPVPEAFHSRASATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + +LD + MR AA+HL+G HDFT+FR+ CQA SP++T+ ++ G Sbjct: 119 RPSVESGRVGWVFHALDGDAMRAAARHLLGEHDFTSFRASACQAKSPVKTLRRIEITQRG 178 Query: 182 N------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FLH +R+ +G L VG G+ + + LQ Sbjct: 179 TGGVPAGQASGDRGDVPTCYWRFEFEGNAFLHHMVRNIMGCLVAVGQGQHPADWMHAVLQ 238 Query: 224 AQDRKECGPLAPPEGLYF 241 A+ R P P+GLYF Sbjct: 239 ARSRDAAAPTFSPDGLYF 256 >gi|240144416|ref|ZP_04743017.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|257203524|gb|EEV01809.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] Length = 294 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + K + + GE +VV GA RTDSGVH+L + Sbjct: 48 MRVKMIVAYDGTNYKGWQVQPNGITIEEVLNKNLSNLLGEQIVVSGASRTDSGVHSLGNI 107 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD + ALN ++ + I + V+ +H R+ R++Y YRI+ R Sbjct: 108 AVFDTNTRMPADKIAFALNQ--RLPEDIVVQGSCEVEDGWHPRYQNSRKTYEYRILNRTF 165 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + + LD E M+ AA +L G HDF +F +I Q + +RTI DV G Sbjct: 166 RMPTRRLDTYFYHYPLDVEKMKKAASYLEGEHDFKSFCAIGAQVKTTVRTIYACDVEKEG 225 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L VG G ++ L +DR GP AP GL Sbjct: 226 DIITIRVTGNGFLYNMVRIIAGTLVQVGGGAIKPEAVKGILAKKDRSAAGPTAPAHGLTM 285 Query: 242 DSVEY 246 +E+ Sbjct: 286 MGIEF 290 >gi|187931655|ref|YP_001891639.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. mediasiatica FSC147] gi|238691562|sp|B2SGK2|TRUA_FRATM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187712564|gb|ACD30861.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. mediasiatica FSC147] Length = 258 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+ +DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEVKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|222100131|ref|YP_002534699.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359] gi|254764873|sp|B9K8Q0|TRUA_THENN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221572521|gb|ACM23333.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359] Length = 245 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 133/246 (54%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I+EY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MRRVAAIVEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + K A+NA L D + + + V K FH RF +R Y Y I T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKKVFEVPKNFHPRFDVKKRIYHYFIHTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + AW P LD E MR AA++L G HDFT+F++ P+RTI + S Sbjct: 119 REKNVFLRKYAWWFPYELDLEAMRKAAKYLEGTHDFTSFKT-GSDERDPVRTIYRIRILS 177 Query: 180 FG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++I IRV RSFL +R+ V +L VG +W L++ L+A+DR AP G Sbjct: 178 LGKDMILIRVEGRSFLRRMVRNIVAALVKVGLRQWEPEKLKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|315169224|gb|EFU13241.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341] gi|315171531|gb|EFU15548.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342] Length = 277 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 37 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 96 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 97 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 154 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 155 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIERNGEML 214 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 215 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 274 Query: 245 EY 246 Y Sbjct: 275 YY 276 >gi|52841533|ref|YP_095332.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54297221|ref|YP_123590.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Paris] gi|148358844|ref|YP_001250051.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Corby] gi|296106890|ref|YP_003618590.1| tRNA pseudouridine synthase A [Legionella pneumophila 2300/99 Alcoy] gi|62901237|sp|Q5X5Q4|TRUA_LEGPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901247|sp|Q5ZVY6|TRUA_LEGPH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228736|sp|A5IBF5|TRUA_LEGPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52628644|gb|AAU27385.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751006|emb|CAH12417.1| tRNA-pseudouridine synthase I [Legionella pneumophila str. Paris] gi|148280617|gb|ABQ54705.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Corby] gi|295648791|gb|ADG24638.1| tRNA pseudouridine synthase A [Legionella pneumophila 2300/99 Alcoy] Length = 262 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 135/250 (54%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q +IQ ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVVEYDGSQYHGWQAQTGLHTIQQAVEFALSKVADSSISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSI-----VDKQFHARFSAIRRSYLYRI 116 HFD ++ +++ A++ ++T ++ + + + FHAR+SA+ R Y Y I Sbjct: 61 IHFDCEKD-------RSIRAWIHGANTFLPKDICVKWGKEMPENFHARYSAVSRRYRYVI 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G + LD M+ Q L+G +DFT+FRS+ CQ+++P+R I Sbjct: 114 YNGAIRPGLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVECQSNTPMRNIHQLQ 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+L+ + + A +FLH +R+ G L VG GK ++ L A+DRK AP Sbjct: 174 VTRHGDLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVLNAKDRKLGAETAPS 233 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 234 YGLYLVQVTY 243 >gi|262374120|ref|ZP_06067397.1| tRNA pseudouridine synthase A [Acinetobacter junii SH205] gi|262311131|gb|EEY92218.1| tRNA pseudouridine synthase A [Acinetobacter junii SH205] Length = 265 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 13/247 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G+ Y GWQ Q+ G S+Q +IEK + + V++H AGRTD+GVHA Sbjct: 1 MQRYAIGIEFCGTQYRGWQTQQAGVVSVQETIEKVLSKIADHPVILHAAGRTDAGVHATN 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R W+ + A ++ ISI + +D+ FHARF A+ R Y Y Sbjct: 61 MVAHFDTTAIRPERGWL-------MGANSQLPKDISIQWIKCMDENFHARFKAMARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AL + + + LD + M AA G H+F +FR+ CQ++ P+R + H Sbjct: 114 LVYNAPTRPALLHKQVTHLYQELDVQKMIKAAAKFEGTHNFESFRAAACQSNQPVRHVKH 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + + A FLH +R+ +G L +G G + ++ A+DR+ G A Sbjct: 174 CRLFEHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRRAAGITA 233 Query: 235 PPEGLYF 241 P +GLYF Sbjct: 234 PADGLYF 240 >gi|15903494|ref|NP_359044.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6] gi|116516785|ref|YP_816881.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39] gi|148988650|ref|ZP_01820083.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73] gi|149004327|ref|ZP_01829087.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69] gi|169833383|ref|YP_001694996.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Hungary19A-6] gi|182684548|ref|YP_001836295.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14] gi|221232354|ref|YP_002511507.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC 700669] gi|225855038|ref|YP_002736550.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA] gi|237649225|ref|ZP_04523477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI 1974] gi|237822076|ref|ZP_04597921.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI 1974M2] gi|307127806|ref|YP_003879837.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B] gi|38258775|sp|Q8CWQ1|TRUA_STRR6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122278273|sp|Q04JF7|TRUA_STRP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688376|sp|B1ID11|TRUA_STRPI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691180|sp|B2IRB1|TRUA_STRPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764868|sp|B8ZM12|TRUA_STRPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764870|sp|C1CFH9|TRUA_STRZJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15459107|gb|AAL00255.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6] gi|116077361|gb|ABJ55081.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39] gi|147757704|gb|EDK64720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69] gi|147925851|gb|EDK76926.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73] gi|168995885|gb|ACA36497.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Hungary19A-6] gi|182629882|gb|ACB90830.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14] gi|220674815|emb|CAR69389.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC 700669] gi|225723432|gb|ACO19285.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA] gi|306484868|gb|ADM91737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B] gi|332072765|gb|EGI83246.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17545] gi|332200155|gb|EGJ14228.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47368] Length = 249 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-- 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLI 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|291279383|ref|YP_003496218.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1] gi|290754085|dbj|BAI80462.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1] Length = 244 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++EY+G+ +FGWQRQK+ ++QG IE A+ + + + G+GRTD+GVHA+ Q Sbjct: 1 MYKKKCVVEYDGTYFFGWQRQKDLRTVQGVIEAALSKIYKSSINIVGSGRTDTGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF R + LN+ L + + I ++ VD FHA+ SAI ++Y+Y+I Q Sbjct: 61 VFHFVSERYLENRSVLLGLNSVL--PEDVVIKHVEDVDLSFHAQKSAISKTYIYKIYNYQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + RAW I ++D + + + G DF+ +P+RTI++ Sbjct: 119 IRSALFRNRAWWIRDNIDVDLLNEYLKFFKGEKDFSAMCLKRSVPENPVRTINYIFAKRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A FLH +R+ VG++ + + +E+ L+++DRK G APP+GLY Sbjct: 179 GDFINIEINANGFLHNMVRNIVGTVIDLYSDNSSPEKIEEILKSKDRKNAGRTAPPQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LKEVFY 244 >gi|255974352|ref|ZP_05424938.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|257088141|ref|ZP_05582502.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|307278161|ref|ZP_07559243.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|255967224|gb|EET97846.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256996171|gb|EEU83473.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|306505150|gb|EFM74338.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|315026898|gb|EFT38830.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137] Length = 246 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|303240936|ref|ZP_07327447.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] gi|302591522|gb|EFL61259.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] Length = 245 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 8/244 (3%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ Y GWQ Q N ++Q ++EKAI+ +TGE++ ++G+ RTD GVHA QVA+F Sbjct: 6 LIIEYDGTNYHGWQSQSNAKTVQETVEKAIYGLTGEVININGSSRTDQGVHAYGQVANF- 64 Query: 66 LVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +P ALN L + I I V FHAR+ A + Y Y I P A Sbjct: 65 FTKSNIPHDRFSYALNRML--PEDIIIRKSEEVSMDFHARYCAKGKKYRYLIYNSSFPSA 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--SFGN 182 + + R++ + +LD ++M+ A G HDF+ F++ + +RTI FDVN + Sbjct: 123 IFRNRSYHVSHNLDMDSMKKAIPFFKGTHDFSAFKATGSSVKTSVRTI--FDVNLSRAED 180 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I V FL+ +R VG+L VG G+ + ++ +++ DRK G APP+GLY Sbjct: 181 NIWFEVSGDGFLYNMVRIMVGTLVDVGMGRIKAEEIPGIIESCDRKRAGRTAPPQGLYLV 240 Query: 243 SVEY 246 V Y Sbjct: 241 EVYY 244 >gi|291520511|emb|CBK75732.1| pseudouridylate synthase I [Butyrivibrio fibrisolvens 16/4] Length = 245 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++ Y+GS Y GWQ Q NG +I+ + +A+ + E + + GA RTD+GVH+L V Sbjct: 1 MRVMIVVAYDGSNYSGWQIQPNGVTIEQKLNEALTDLLQEPISIMGASRTDAGVHSLGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD + ALN ++ D I + V+ FH R++A R++Y Y+I+ R+ Sbjct: 61 AVFDTNSRMPADKISFALNQ--RLPDDIVVQYSCQVEDDFHPRYAACRKTYEYKILNRKM 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ + LD E M AA +L+G+HDFT+F S+ Q S +RTI V Sbjct: 119 PDPTKRKDTFHYYYDLDVEKMNEAAAYLIGQHDFTSFSSVKAQVKSRVRTIYTAKVYKED 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IR+ FL+ +R G+L VG G+ + + + ++R+ GP AP GL Sbjct: 179 DVIHIRLTGDGFLYNMVRIIAGTLIKVGAGEMEPMYMLEIFRGRNRELAGPTAPAHGLTM 238 Query: 242 DSVEYS 247 +EY Sbjct: 239 IGIEYE 244 >gi|308172039|ref|YP_003918744.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7] gi|307604903|emb|CBI41274.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7] gi|328551849|gb|AEB22341.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens TA208] gi|328910104|gb|AEB61700.1| pseudouridylate synthase I [Bacillus amyloliquefaciens LL3] Length = 247 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ T V V+ +GRTDS VHA Sbjct: 1 MRMKCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGRVPVYSSGRTDSDVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAEKWPFALNALL--PDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ + MR A++HL+G HDFT+F ++ +RTI + Sbjct: 119 KHPDVFKRHYAYHFAYQLNVQKMREASRHLIGTHDFTSFCAVDTAVQDKVRTIYELEWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +++R+ FL+ +R G+L G GK++ D++ L+A+DR+ G AP GL Sbjct: 179 TGDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y SV Y Sbjct: 239 YLWSVCYD 246 >gi|270293156|ref|ZP_06199367.1| tRNA pseudouridine synthase A [Streptococcus sp. M143] gi|270279135|gb|EFA24981.1| tRNA pseudouridine synthase A [Streptococcus sp. M143] Length = 249 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + L G+ V VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAVTVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFDL + L AL+ + + I ++++ IV FH R++ ++Y + I+ R Sbjct: 61 QAIHFDLPYQMNEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+ A + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVEQMQEAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLS 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDKTGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|281202734|gb|EFA76936.1| hypothetical protein PPL_09688 [Polysphondylium pallidum PN500] Length = 275 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 32/250 (12%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL----------VREWVPVILC 76 +Q +E+++ + + V + G+ RTD+GV+AL QVAHFD+ + P ++ Sbjct: 10 VQQVLEESLEVFIRKKVRLVGSSRTDTGVNALHQVAHFDVDTRISKTGEEIDMMPPEVIT 69 Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII----TRQAPLALEKGRAWL 132 ALN ++ + +++ IVD FH+RFSA R+YLYR++ QAP L K R W Sbjct: 70 MALNQNVQ-GYPVRVISTEIVDDSFHSRFSAKSRTYLYRMLGGMHRNQAPFEL-KDRVWA 127 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN---------- 182 + LD M+ AA L GRH+F +FRS CQA +P+RTI F V N Sbjct: 128 VTNQLDVPKMQEAATLLCGRHNFNSFRSSKCQADNPVRTISSFQVFDLPNPDIWQYNSAP 187 Query: 183 ------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 LI I V AR+FLH Q+R V +L+ VG + + L++ + A+DR++ P APP Sbjct: 188 LGVNPQLIGIEVKARAFLHNQVRIMVSTLERVGSHQMSLDQLQELIDAKDRQKAPPTAPP 247 Query: 237 EGLYFDSVEY 246 L V Y Sbjct: 248 YPLTLTKVSY 257 >gi|110636905|ref|YP_677113.1| tRNA pseudouridine synthase A [Cytophaga hutchinsonii ATCC 33406] gi|110279586|gb|ABG57772.1| pseudouridylate synthase I [Cytophaga hutchinsonii ATCC 33406] Length = 248 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ Y GWQ Q+N ++QG ++KA+ V G + + G+GRTD+GVHA Q+ Sbjct: 1 MRYFLDISYRGANYHGWQIQENAVTVQGVLQKALSNVLGAKIDILGSGRTDTGVHASSQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D +E + L +N YL I I + +V HARF A+ R+Y+YRI + Sbjct: 61 VHLDSPKE-IDAALIFRINGYL--PKDICIKSARLVQDDAHARFDALSRAYVYRITLVKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E G A+ ++ + M AA L+ DF +F +H ++ TI H G Sbjct: 118 PF--EIGLAYYFYPPIEIDRMNKAAAILLQYEDFESFSKVHTDVTNFNCTIFHAYWERNG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ V A FL +R+ VG++ VG G+ + D + + A+DRK G APPE LY Sbjct: 176 DMLYFHVKANRFLRGMVRTLVGTMLEVGKGRMSLDDFVQIILAKDRKRAGISAPPEALYL 235 Query: 242 DSVEY 246 VEY Sbjct: 236 SEVEY 240 >gi|293364991|ref|ZP_06611708.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|307703239|ref|ZP_07640185.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|291316441|gb|EFE56877.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|307623314|gb|EFO02305.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] Length = 249 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAIAVHGAGRTDSGVHALE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+ A + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLS 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|170703047|ref|ZP_02893873.1| tRNA pseudouridine synthase A [Burkholderia ambifaria IOP40-10] gi|170132039|gb|EDT00541.1| tRNA pseudouridine synthase A [Burkholderia ambifaria IOP40-10] Length = 270 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 136/249 (54%), Gaps = 10/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHG--AGRTDSGVHA 57 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ GE V +H AGRTD+GVH Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERAL----GEFACVPLHTTVAGRTDTGVHG 56 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 57 LGQVVHFDTDLDRTDFSWVRGTNAFLP--STVSVQWAKPMPDTFHARFAAFERTYYYVLY 114 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 115 VHPVRSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDV 174 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ I R A +FLH +R+ +G L VG G++ + L L +DRK P + Sbjct: 175 RRAGHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRKLAAPTFMAD 234 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 235 GLYLAHVGY 243 >gi|241668494|ref|ZP_04756072.1| tRNA pseudouridine synthase A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877028|ref|ZP_05249738.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843049|gb|EET21463.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 258 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL++ +VD F++RF+A R+Y Y I Sbjct: 61 VVNFHSDADRNLSSWMRGTNALL--PQDIKILDIKVVDNDFNSRFTAKNRTYNYIIYNSL 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + L+ + M A ++L+G DFT+FRS CQ+++P R I + Sbjct: 119 ISSPIFAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+F+GSL VG + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNFIGSLLKVGLEFESPEWIKLVLEAKDRTKAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|149021302|ref|ZP_01835548.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72] gi|168491513|ref|ZP_02715656.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04] gi|225861429|ref|YP_002742938.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Taiwan19F-14] gi|298229625|ref|ZP_06963306.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254115|ref|ZP_06977701.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503335|ref|YP_003725275.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae TCH8431/19A] gi|254764872|sp|C1CSL6|TRUA_STRZT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147930403|gb|EDK81387.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72] gi|183574268|gb|EDT94796.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04] gi|225728219|gb|ACO24070.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Taiwan19F-14] gi|298238930|gb|ADI70061.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae TCH8431/19A] gi|327389783|gb|EGE88128.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04375] gi|332073932|gb|EGI84410.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41301] Length = 249 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVAADFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-- 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLI 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|306829107|ref|ZP_07462297.1| tRNA pseudouridine synthase A [Streptococcus mitis ATCC 6249] gi|304428193|gb|EFM31283.1| tRNA pseudouridine synthase A [Streptococcus mitis ATCC 6249] Length = 249 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++ + IV FH R++ + Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVILIEIVADDFHCRYAKHSKIYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+IA + L G HDFT F + + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVENKVRTITEASLT 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMLVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|15901439|ref|NP_346043.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4] gi|111656856|ref|ZP_01407696.1| hypothetical protein SpneT_02001886 [Streptococcus pneumoniae TIGR4] gi|149013277|ref|ZP_01834035.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75] gi|168486863|ref|ZP_02711371.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00] gi|225859353|ref|YP_002740863.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585] gi|303253960|ref|ZP_07340080.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455] gi|303258528|ref|ZP_07344508.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293] gi|303262617|ref|ZP_07348557.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292] gi|303263556|ref|ZP_07349478.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397] gi|303267576|ref|ZP_07353421.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457] gi|303269928|ref|ZP_07355667.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458] gi|25453312|sp|Q97PL0|TRUA_STRPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764867|sp|C1C8I7|TRUA_STRP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14973090|gb|AAK75683.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4] gi|147762942|gb|EDK69888.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75] gi|183570198|gb|EDT90726.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00] gi|225721425|gb|ACO17279.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585] gi|301794601|emb|CBW37047.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV104] gi|301802309|emb|CBW35063.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV200] gi|302599048|gb|EFL66074.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455] gi|302636173|gb|EFL66668.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292] gi|302640029|gb|EFL70484.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293] gi|302640531|gb|EFL70939.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458] gi|302642899|gb|EFL73201.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457] gi|302646594|gb|EFL76819.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397] Length = 249 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|325955163|ref|YP_004238823.1| tRNA pseudouridine synthase A [Weeksella virosa DSM 16922] gi|323437781|gb|ADX68245.1| tRNA pseudouridine synthase A [Weeksella virosa DSM 16922] Length = 248 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 132/246 (53%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG YFGWQRQ S+Q IE + + E + + GAGRTD+GVHA + Sbjct: 1 MRYFLELAYNGQNYFGWQRQPKQLSVQEKIEFCLSTLLREEINIVGAGRTDTGVHAKKMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + LN++L + IS+ ++ V + HARF A++R+Y Y I T++ Sbjct: 61 AHFDFDGSLTDDFI-RRLNSFL--PEDISVTSIHCVAPEAHARFDAVKRTYHYHIYTQKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSF 180 P +W I K LD E M AA++L+ + DF +F +H + I T+ + + Sbjct: 118 PFTTTT--SWQIRKPLDIEKMNEAAKYLIKKADFGSFAKLHTDVKTNICTVYRAEWIQIE 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK T +D + +DRK APP+GL+ Sbjct: 176 KDFFCFEITADRFLRNMVRAIVGTLVEVGLGKITPSDFNNIIDKKDRKFAAASAPPQGLF 235 Query: 241 FDSVEY 246 V Y Sbjct: 236 LVEVLY 241 >gi|322517723|ref|ZP_08070585.1| tRNA pseudouridine synthase A [Streptococcus vestibularis ATCC 49124] gi|322123654|gb|EFX95247.1| tRNA pseudouridine synthase A [Streptococcus vestibularis ATCC 49124] Length = 249 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + L +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L M+ AA LVG HDFT F + + +RTI V Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESCDRNLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|317403279|gb|EFV83796.1| pseudouridylate synthase I [Achromobacter xylosoxidans C54] Length = 268 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 132/243 (54%), Gaps = 4/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAH 63 M + Y+GS + GWQ Q + ++Q ++E A+ F + V AGRTD+GVH QV H Sbjct: 1 MGLAYDGSAWQGWQTQPHRQTVQDTLEAALAQFCGVTDAVPTICAGRTDTGVHGAMQVIH 60 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D + + +NA+L S IS+ V FHARFSA R+Y+Y + + Sbjct: 61 LDTTLDRRMESWVRGVNAFLPSS--ISVQWAKAVPDAFHARFSARARTYVYLLWRGRVRP 118 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 AL GRA + LD MR AA L+G HDF++FRS CQA P+R + D++ G Sbjct: 119 ALWAGRAGWCYQPLDVGAMRAAANALLGEHDFSSFRSSQCQAKHPVRIMHRLDIDERGPF 178 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A +FLH +R+ +G+L +G G+ + + + L +DR+ P P+GLY + Sbjct: 179 LVFTLRANAFLHHMVRNIMGALLQIGQGRESVDWMAQLLSWRDRRRGAPTFSPDGLYLSA 238 Query: 244 VEY 246 ++Y Sbjct: 239 IDY 241 >gi|160872663|ref|ZP_02062795.1| tRNA pseudouridine synthase A [Rickettsiella grylli] gi|159121462|gb|EDP46800.1| tRNA pseudouridine synthase A [Rickettsiella grylli] Length = 264 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 128/250 (51%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I Y G Y GWQ Q IQ +E+AI V V + AGRTD GVHAL QV Sbjct: 1 MRIAFGISYQGGAYHGWQSQTKLPCIQTYLERAISRVADHSVRLQCAGRTDKGVHALSQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD + W+ N+YL I + + +V+ FHARFSA+ R Y Y I Sbjct: 61 VHFDTDVWRSKKSWL-----FGSNSYLP--PDIRVNWVQVVEDTFHARFSALARRYRYII 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 R AL L+ ++M AAQ+LVG HDF++FR+ CQA+ +R I H Sbjct: 114 YNRHLKSALWNAYTSHCCYPLNEKDMHRAAQYLVGEHDFSSFRAASCQANHALREIQHIQ 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ + + + A +FLH +R+ L L+G GK ++ ++ L AQ+RK A P Sbjct: 174 VKRHGDYVIMDIQANAFLHHMVRNISAVLMLIGQGKKSTLWAQEVLFAQNRKMADVTASP 233 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 234 TGLYLSHVIY 243 >gi|256618219|ref|ZP_05475065.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|256597746|gb|EEU16922.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|315033638|gb|EFT45570.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017] Length = 246 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|55820220|ref|YP_138662.1| tRNA pseudouridine synthase A [Streptococcus thermophilus LMG 18311] gi|55822111|ref|YP_140552.1| tRNA pseudouridine synthase A [Streptococcus thermophilus CNRZ1066] gi|62901189|sp|Q5M1T6|TRUA_STRT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901193|sp|Q5M6C9|TRUA_STRT2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|55736205|gb|AAV59847.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Streptococcus thermophilus LMG 18311] gi|55738096|gb|AAV61737.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Streptococcus thermophilus CNRZ1066] Length = 248 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 135/250 (54%), Gaps = 7/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + L +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L M+ AA LVG HDFT F + + +RTI V S Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASV-S 177 Query: 180 FGNLIEIRVVARS---FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V A S FL+ Q+R+ VG+L +G+G+ + ++ L+++DR GP Sbjct: 178 IDEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTVAG 237 Query: 237 EGLYFDSVEY 246 GLY + Y Sbjct: 238 NGLYLKEIRY 247 >gi|15602502|ref|NP_245574.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp. multocida str. Pm70] gi|13431946|sp|P57861|TRUA_PASMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12720912|gb|AAK02721.1| TruA [Pasteurella multocida subsp. multocida str. Pm70] Length = 264 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 129/252 (51%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I+YNG Y GWQRQ+N +S+Q +EKAI V + + AGRTDSGVHA QV Sbjct: 1 MKIALGIQYNGKNYCGWQRQENVASVQEQLEKAISFVANQPCQIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D IS+ V FHARFSA R Y Y Sbjct: 61 VHFETDAIRAEKAWSFGVNANL--PDDISVSWAKCVTDDFHARFSATARRYRY------- 111 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 L K R+ ++P+ LD M A Q L+G DF++FR+ CQ+ +P R + H Sbjct: 112 ILYCNKLRSAILPEGVTHCHLDLDHHLMHQAGQALLGEQDFSSFRAAQCQSHTPFRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G I + + A +F+H +R+ VGSL VG G + L +DR+ P A Sbjct: 172 LKVVRRGQYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAQKDRRLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 PEGLY +V Y Sbjct: 232 KPEGLYLVNVSY 243 >gi|182418813|ref|ZP_02950078.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521] gi|237666467|ref|ZP_04526452.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377310|gb|EDT74871.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521] gi|237657666|gb|EEP55221.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E BL5262] Length = 244 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 134/242 (55%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IE++GS + GWQ+Q G ++Q IE+AIF TGE ++++G+ RTDSGVHA +A+F Sbjct: 6 LTIEFDGSEFCGWQKQPKGRTVQKVIEEAIFKATGEEIIINGSSRTDSGVHAKDMIANF- 64 Query: 66 LVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +P +ALN +++ +SI+ V + FHAR+S+ ++Y Y II R ++ Sbjct: 65 FTNSTIPGDKFREALN--VRLPKDVSIIRSEEVSEDFHARYSSKGKTYSYTIIHRYERVS 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + LD +NMR A ++ +G HDF F S + +RTI + G I Sbjct: 123 FGHQYVYHWRHDLDIDNMREACKYFIGTHDFRAFMSPGSSIKTTVRTITDLHIEQNGEKI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I V A FL+ +R VG+L VG+ K D++ ++ +RK G + PP GL + V Sbjct: 183 KIFVSADGFLYNMVRIIVGTLIKVGNKKLKPEDIQDIIREGNRKRAGMVVPPNGLVLEKV 242 Query: 245 EY 246 Y Sbjct: 243 FY 244 >gi|239814424|ref|YP_002943334.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110] gi|259550491|sp|C5CSH0|TRUA_VARPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239801001|gb|ACS18068.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110] Length = 270 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 131/246 (53%), Gaps = 10/246 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I YNG Y GWQ Q++G ++Q +E A+ + + AGRTD+GVHAL QV Sbjct: 1 MRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAAQPIGTLCAGRTDAGVHALMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P + N +L D I++ V +FH R SA+ R YLY + Q+ Sbjct: 61 VHFDTTVEREPFSWMRGTNRFLP--DDIAVQWAQPVPDEFHCRASALARRYLY--VLSQS 116 Query: 122 PL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P+ +L+ GR LD + MR AA LVG+HDF++FR+ CQA SP++ + ++ Sbjct: 117 PVRPSLDSGRVGWSMHPLDGDAMRAAAALLVGKHDFSSFRASACQARSPVKDLRRIEITR 176 Query: 180 FGNLIEIR----VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G+ R A +FLH IR+ +G L +G G + + L+A+ RK P Sbjct: 177 VGSGDRCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEWITEVLEARSRKVAAPTFS 236 Query: 236 PEGLYF 241 GLYF Sbjct: 237 ANGLYF 242 >gi|148997657|ref|ZP_01825221.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70] gi|168575203|ref|ZP_02721166.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016] gi|194397044|ref|YP_002038227.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54] gi|307068239|ref|YP_003877205.1| pseudouridylate synthase [Streptococcus pneumoniae AP200] gi|238690845|sp|B5E6N8|TRUA_STRP4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147756156|gb|EDK63198.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70] gi|183578806|gb|EDT99334.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016] gi|194356711|gb|ACF55159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54] gi|306409776|gb|ADM85203.1| Pseudouridylate synthase [Streptococcus pneumoniae AP200] gi|332199640|gb|EGJ13715.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41317] Length = 249 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-ILDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-- 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLI 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|88799996|ref|ZP_01115567.1| tRNA-pseudouridine synthase I [Reinekea sp. MED297] gi|88777274|gb|EAR08478.1| tRNA-pseudouridine synthase I [Reinekea sp. MED297] Length = 286 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ + GWQ QK+G S+IQ ++E AI V E V AGRTD+GVHA Q+ Sbjct: 15 RIVLCLEYKGTAFHGWQIQKSGVSTIQAALEAAIAKVADEPVSTIVAGRTDAGVHATNQI 74 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N ++ D IS+ ++ VD+ FHARFSA R+Y + I Sbjct: 75 VHFDTRAQRSDYGWKMGING--RLPDDISVKWVTQVDEHFHARFSAQERAYRFIIHNNWV 132 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL LD M+ AA L+G HDF++FR+ CQA SP+RT+ V FG Sbjct: 133 KSALLHEVTTWEQYELDVGLMQQAANRLLGTHDFSSFRAAECQAHSPVRTLRELTVARFG 192 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I+ A FLH +R+ VG + +G G+ L +DR+ G A GLYF Sbjct: 193 EFIVIQARADGFLHHMVRNLVGVMLPIGRGRKPVDWASDVLNYKDRRRGGVTAKGNGLYF 252 Query: 242 DSVEYS 247 Y+ Sbjct: 253 VRASYN 258 >gi|146307739|ref|YP_001188204.1| tRNA pseudouridine synthase A [Pseudomonas mendocina ymp] gi|145575940|gb|ABP85472.1| tRNA pseudouridine synthase A [Pseudomonas mendocina ymp] Length = 287 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 133/252 (52%), Gaps = 16/252 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ N +SIQG +E A+ V G E + + AGRTD+ VHA Q Sbjct: 19 RIALGLEYKGARYRGFQRQAGNVASIQGCLESALSKVAGGEPINIMCAGRTDASVHASGQ 78 Query: 61 VAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD E W+ + A + + + IS+ ++ FHARFSA+ R Y Y Sbjct: 79 VVHFDTAVERPLHAWI-------MGANMNLPNDISVTWARVMPAHFHARFSAMARRYRYV 131 Query: 116 IITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I P + + W + LD MR AA+ LVG HDF+ FR+ CQA SPI+T+ H Sbjct: 132 IYNDPIRPAHMAEEVTW-NHRPLDVTRMREAARALVGTHDFSAFRATQCQAKSPIKTVHH 190 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G I + + A +FLH +R+ G L +G G+ + L+ DR+ G A Sbjct: 191 LQVIEHGCFIVLDIRANAFLHHMVRNIAGVLMAIGAGERPVEWAREVLERADRRSGGVTA 250 Query: 235 PPEGLYFDSVEY 246 P GLY VEY Sbjct: 251 HPYGLYLVQVEY 262 >gi|54294200|ref|YP_126615.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Lens] gi|62901233|sp|Q5WX34|TRUA_LEGPL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|53754032|emb|CAH15505.1| tRNA-pseudouridine synthase I [Legionella pneumophila str. Lens] Length = 262 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 131/250 (52%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q +IQ ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVVEYDGSQYHGWQAQTGLHTIQQAVEFALSKVADSSISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD +R W+ N++L I + + + FHAR+SA+ R Y Y I Sbjct: 61 IHFDCEKDRSIRAWI-----HGANSFL--PKDICVKWGKEMPENFHARYSAVSRRYRYVI 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G + LD M+ Q L+G +DFT+FRS+ CQ+++P+R I Sbjct: 114 YNGAIRPGLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVECQSNTPMRNIHQLQ 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+L+ + + A +FLH +R+ G L VG GK ++ L A+DRK AP Sbjct: 174 VTRHGDLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVLNAKDRKLGAETAPS 233 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 234 YGLYLVQVTY 243 >gi|257083304|ref|ZP_05577665.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] gi|256991334|gb|EEU78636.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] Length = 246 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTNKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|164688053|ref|ZP_02212081.1| hypothetical protein CLOBAR_01698 [Clostridium bartlettii DSM 16795] gi|164602466|gb|EDQ95931.1| hypothetical protein CLOBAR_01698 [Clostridium bartlettii DSM 16795] Length = 245 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M++EY+GS + G+Q+ K N ++IQG +E + + E + + G+GRTD GVHA QV +F Sbjct: 6 MVVEYDGSNFKGFQKLKDNENTIQGKLESVLSQMADENIEIIGSGRTDMGVHAYGQVVNF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + K L YL +I+I + VD +FH+R++A R+ YLY+I + P Sbjct: 66 KTNSPLSLNKMHKYLYEYL--PQSIAIREIEEVDDRFHSRYNAKRKVYLYKIDNNEYPNP 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + +PK +D + MR A LVG HDFT+F S + S +R I +N LI Sbjct: 124 FNRKYTCHVPKKIDLDKMRAVADVLVGEHDFTSFCSSRSKKKSHVREIYSISINENNGLI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 EI V FL+ +R G+L G K T +++ L+ +DR + AP +GL+ V Sbjct: 184 EIYVEGNGFLYNMVRIIAGTLIDAGHNKITPEEVKNLLELKDRSKSPETAPSKGLFLYRV 243 Query: 245 EY 246 +Y Sbjct: 244 KY 245 >gi|288554758|ref|YP_003426693.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4] gi|288545918|gb|ADC49801.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4] Length = 247 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 134/248 (54%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R II Y+G+ + G+Q Q N ++Q IE+A+ V G+ V V +GRTD+GVHA Sbjct: 1 MNRIACIISYDGTNFSGYQVQPNKRTVQLEIEQALKRVHKGQEVSVTASGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD KALNA L D I +L+ +K FHAR+ + Y YR++ Sbjct: 61 QVIHFDSPFRIPAAQWPKALNACL--PDDIRVLSAHYAEKDFHARYHTTGKEYRYRVLNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + +LD + MR AA +L+G HDF+ F + + +RT+ D+N Sbjct: 119 EDPDVFRRHHTAHVLYALDIDKMRQAAAYLIGTHDFSAFCAANTSVIDKVRTLYAVDINV 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FL+ +R VG+L VG GK T+ ++ AL+ R + G APP+GL Sbjct: 179 HEDELHFILRGNGFLYNMVRIIVGTLLEVGYGKRTAESVDTALRTCKRDDAGKTAPPQGL 238 Query: 240 YFDSVEYS 247 Y SV+Y+ Sbjct: 239 YLWSVQYN 246 >gi|322388332|ref|ZP_08061936.1| tRNA pseudouridine synthase A [Streptococcus infantis ATCC 700779] gi|321141004|gb|EFX36505.1| tRNA pseudouridine synthase A [Streptococcus infantis ATCC 700779] Length = 249 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + L G+ + +HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTKLNKGQAITIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEVVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+ A + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTAAGTSVEDKVRTITEASLR 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|296333145|ref|ZP_06875599.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672848|ref|YP_003864519.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296149761|gb|EFG90656.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411091|gb|ADM36209.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 247 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + + + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAEKWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ +NMR AA+HL+G HDFT+F ++ + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYHLNVQNMREAAKHLLGTHDFTSFCAVKTEVQDKVRTIYELDWAE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + D++ L+A+DR+ G AP GL Sbjct: 179 TDDGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLWNVFYD 246 >gi|326792573|ref|YP_004310394.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326543337|gb|ADZ85196.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 245 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +I+ Y+G+ Y G+ +Q N ++IQG+++ AI + V GAGRTD GVHA Q Sbjct: 1 MKRFKLIVAYDGTNYNGFAKQPNATTIQGTLDVAIAKIVQHEVRTLGAGRTDRGVHAFAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 FD + L KA+N+ L IS+ ++ V + FH RF A R++Y Y+I+ + Sbjct: 61 CCVFDSDTKIPADRLAKAINSQLPAD--ISVKSVEEVSEDFHPRFGAKRKTYRYQILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L P LD E M+ AA ++G HDF F + +R I DV Sbjct: 119 IRDPFLYKYALLYPYELDVERMQEAANEMIGEHDFACFCAAGSTVKDTVRIIYSIDVKKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ I V FL+ +R +G+L V + K T ++ +++++R+ GP PP+GL Sbjct: 179 GDLVSIDVCGNGFLYNMVRIIIGTLLDVNENKITKDSIKTIIESKNRELAGPTVPPQGLT 238 Query: 241 FDSVEYS 247 ++ Y+ Sbjct: 239 MLNIVYN 245 >gi|315612755|ref|ZP_07887666.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 49296] gi|315314865|gb|EFU62906.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 49296] Length = 274 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 26 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 85 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + I+ R Sbjct: 86 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEF-IVDR 142 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M++A + L G HDFT F + +RTI Sbjct: 143 GRPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEARLS 202 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 203 VDETGQFLTFSFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILKKKDRQLAGPTAAP 262 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 263 NGLYLKEIRYE 273 >gi|315651854|ref|ZP_07904857.1| tRNA pseudouridine synthase A [Eubacterium saburreum DSM 3986] gi|315485856|gb|EFU76235.1| tRNA pseudouridine synthase A [Eubacterium saburreum DSM 3986] Length = 245 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ+Q NG +++ + +AI +TGE + V GA RTDSGVHA Sbjct: 1 MRRIRLIVSYDGTNYCGWQKQPNGITVEEILNRAISKLTGEEIEVIGASRTDSGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD A+N ++ D I I V+ +H R + ++Y YRI+ R+ Sbjct: 61 VAVFDTNVRMAADKFAFAINQ--RLPDDIRIQYSDEVESDWHPRKNDCIKTYTYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ A +LD E MR A+ + +G HDFT+F S QASSPIRT+ +V Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCSQKSQASSPIRTVFSLEVLQD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I I V FL+ IR G+L VG G + + + + ++A++RK G P +GL Sbjct: 179 EDMITIVVRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKERKFAGQTMPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|290968602|ref|ZP_06560140.1| tRNA pseudouridine synthase A [Megasphaera genomosp. type_1 str. 28L] gi|290781255|gb|EFD93845.1| tRNA pseudouridine synthase A [Megasphaera genomosp. type_1 str. 28L] Length = 264 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 131/244 (53%), Gaps = 4/244 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 C+I+ Y+G+ + G+QRQ N SSIQ IE+A+ + E + V+GA RTD+GVHA QV +F Sbjct: 8 CLIVAYDGTDFHGFQRQTNASSIQQYIEEALTRIFQEPITVYGAARTDAGVHARGQVVNF 67 Query: 65 DLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 +PV + A+ AYL TI++L + F R + Y YRI+ R P Sbjct: 68 -YASGSIPVDKIPYAMKAYL--PPTIAVLQAREMASHFSVRHDNCGKHYCYRIVNRAVPD 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + +W I K LD E MR A L+G HDF+ F + +PI+T+ + + Sbjct: 125 PFQLRYSWFIRKPLDVEAMRQGANILLGTHDFSAFEGKNTTPMNPIKTMYAVQIQKNRDN 184 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +EI V+ FL+ +R+ G L +G ++T+ + L+ DRK+ G AP GL + Sbjct: 185 VEIHVIGDGFLYHMVRNMAGGLADIGLHRFTTIHFRRILKGLDRKKLGATAPAGGLCLEE 244 Query: 244 VEYS 247 V Y+ Sbjct: 245 VFYT 248 >gi|317055617|ref|YP_004104084.1| tRNA pseudouridine synthase A [Ruminococcus albus 7] gi|315447886|gb|ADU21450.1| tRNA pseudouridine synthase A [Ruminococcus albus 7] Length = 245 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 126/244 (51%), Gaps = 6/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y+GS Y GWQRQ N ++Q +E AIF +TGE VVV G RTD+GVHA V F Sbjct: 1 MTLAYDGSNYHGWQRQSNALAVQEVVEDAIFKLTGENVVVQGCSRTDAGVHAREYVLSFG 60 Query: 66 LVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 L +P I C+ + L + D IS++ D+ FHAR+ + Y Y + + Sbjct: 61 L---ELP-INCRGIQLGLNSWLPDDISVIGCEEADEGFHARYMCKGKEYEYIVHNSRIKD 116 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + A+ +D + AA++ VG HDF F S C +R I FDV G+ Sbjct: 117 PFMRNTAFRNTYPIDEVLLDRAAKYFVGEHDFKAFCSTACDKEITVRKIYRFDVRREGDK 176 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + V FL+ +R VG+L + +GK + + + L ++DRK+ G PP+GLY + Sbjct: 177 VIFTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRILDSKDRKKAGKTVPPQGLYLNK 236 Query: 244 VEYS 247 V Y Sbjct: 237 VYYD 240 >gi|269213866|ref|ZP_05983015.2| tRNA pseudouridine synthase A [Neisseria cinerea ATCC 14685] gi|269145225|gb|EEZ71643.1| tRNA pseudouridine synthase A [Neisseria cinerea ATCC 14685] Length = 277 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA QV Sbjct: 20 RWALTLSYDGSRFYGWQKQAGGVPTVQTALENALAQIAGEAVSTIVAGRTDTGVHATAQV 79 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA L + I++L+ +FHARF A R Y Y + + Sbjct: 80 VHFDTAAVRPAQAWIRGVNANLP--EGIAVLHAQQAAPEFHARFDAYGRHYRYLLESSPV 137 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K R LD E MR AA LVG DF++FR+ CQA SP++TI ++ Sbjct: 138 RSPLLKHRVGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAECQAKSPVKTIYSAEIAYGR 197 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 198 GLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVDGFAALIRERSRLKAPPTFMPDGLYL 257 Query: 242 DSVEY 246 ++Y Sbjct: 258 TGIDY 262 >gi|118444045|ref|YP_877232.1| tRNA pseudouridine synthase A [Clostridium novyi NT] gi|118134501|gb|ABK61545.1| tRNA pseudouridine synthase A [Clostridium novyi NT] Length = 246 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 139/242 (57%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++IEY+GS Y GWQ+QK+ +IQ IE+AIF +T + + V+G RTD+GVHA VA+F Sbjct: 7 LVIEYDGSNYSGWQKQKHSMTIQQRIEEAIFDITKQKIEVNGCSRTDAGVHARNFVANFI 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P A+N+ K+ I I N V FHARF + + Y+Y I+ R+ P + Sbjct: 67 IDSSIPPEKFKYAMNS--KLPKDIVIKNSCEVPMDFHARFQSKGKKYVYTILNREEPPTI 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 ++G + K LD + MR A+++ +G H+F +F + S +RTI + DV ++I Sbjct: 125 DRGVVYHFNKKLDVDLMRSASKYFIGSHEFDSFYKKAGSSVKSTLRTIYYCDVTKVDDII 184 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I V+ FL+ +R G+L VG + D++ + A+DR++ G PP+GL + V Sbjct: 185 KIIVIGEGFLYNMVRIIAGTLVEVGIARIKPEDIKNIILAKDREKAGRSLPPQGLCLEEV 244 Query: 245 EY 246 Y Sbjct: 245 LY 246 >gi|332201036|gb|EGJ15107.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47901] Length = 249 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-ILDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-- 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLI 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|217077259|ref|YP_002334977.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B] gi|226708660|sp|B7IHS2|TRUA_THEAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217037114|gb|ACJ75636.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B] Length = 244 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 6/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + Y+G+ +FG+Q Q N ++QG +E A+ + E + AGRTD+GVHA Q Sbjct: 1 MKRFAIEFAYDGTKFFGYQGQPNVRTVQGDLEDALERIFKERIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F+ + + ALNA L D I + +VDK F+ RF+A +R Y Y I T Sbjct: 61 VAAFNCPIERLTETDIKNALNANL--PDDIYVKKAWVVDKSFNPRFAATKRIYHYFISTN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + W LD E MR AA L G HDF++F+ + +P+RTI + + Sbjct: 119 EKDVFM-RNYVWNFRYDLDIEAMRKAASFLEGEHDFSSFKKGKDE-KNPVRTIYRIRILT 176 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 LI IRV RSFL + +R+ VGSL VG G+W + + L+ + R+E APP G Sbjct: 177 LKKGLILIRVEGRSFLRSMVRNIVGSLVRVGLGQWKPEKILEVLEKRSRQEAAGTAPPHG 236 Query: 239 LYFDSV 244 LY V Sbjct: 237 LYLYKV 242 >gi|27904686|ref|NP_777812.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611884|sp|P59508|TRUA_BUCBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27904083|gb|AAO26917.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I) [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 264 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 129/242 (53%), Gaps = 6/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--D 65 IEYNGS Y GWQ QK SS+Q +E A+ ++ V V AGRTD+GVH+ QV HF Sbjct: 12 IEYNGSNYHGWQYQKFASSVQEKVELALSIIANHPVRVTCAGRTDAGVHSTGQVVHFCTS 71 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +R IL N YL IS++ V FHAR+SA+ R Y Y + ++ Sbjct: 72 SIRNDQAWIL--GTNRYL--PKDISVIWKRDVPMHFHARYSALSRRYRYILYNNSCRSSI 127 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + L+ E M AAQ+L+G HDFTTFRS HCQ+ +P R I + +V LI Sbjct: 128 FYQGLKFYHRILNVEKMNQAAQYLLGEHDFTTFRSSHCQSKTPFRKILYVNVFCINCLII 187 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I +VA SFL+ +R+ VG L +G K T + L+ ++R + GLY V+ Sbjct: 188 IDIVANSFLYHMVRNIVGCLIEIGISKKKVTWIRDILKFKNRTSSTKIVESNGLYLVQVQ 247 Query: 246 YS 247 YS Sbjct: 248 YS 249 >gi|297582482|ref|YP_003698262.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10] gi|297140939|gb|ADH97696.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10] Length = 261 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R + IEY+GSG+ G+Q+Q N ++QG +E+A+ ++ E +GRTD+GVH +R Sbjct: 1 MRRMLIRIEYDGSGFNGYQKQPNARTVQGELERALSVMHKAESWPCTSSGRTDTGVHGVR 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD ALN+ L D I +L VD FHAR+ + + Y YR+ T Sbjct: 61 QPVHFDSPLTIPDERWPMALNSLL--PDDIQVLGAMEVDASFHARYDTVGKVYRYRVDTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P ++D E MR AA+HL G HDFT+ S +RT+ + Sbjct: 119 KRQTVFRRSFAAHFPGNMDIEAMREAAKHLEGTHDFTSLSSPKTDVKDKVRTLFAVSLEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++ FL+ +R +G+L VG G W + ++ Q+R+ GP AP GL Sbjct: 179 REDGFDVVFAGSGFLYQMVRILMGTLIKVGSGDWPPDVIPAIIEKQERQAAGPTAPGHGL 238 Query: 240 YFDSVEYS 247 Y + V Y+ Sbjct: 239 YLEDVFYT 246 >gi|254248703|ref|ZP_04942023.1| Pseudouridylate synthase [Burkholderia cenocepacia PC184] gi|124875204|gb|EAY65194.1| Pseudouridylate synthase [Burkholderia cenocepacia PC184] Length = 271 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQAQPHGKTVQNRLEHALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTDLEREVFSWVRGTNAFLP--PTVSVQWAKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 GYFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAHVGYP 245 >gi|196233677|ref|ZP_03132518.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428] gi|196222347|gb|EDY16876.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428] Length = 251 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 130/250 (52%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R M+I Y+G + GWQ Q ++Q +E A G VVVHG+GRTD+GVHAL Q Sbjct: 4 ILRLKMLIAYDGRPFRGWQSQATKDAVQDHMEAAFAKTIGGRVVVHGSGRTDAGVHALAQ 63 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +AH D+ + V + ALN +L I +L +S FHARF A + Y YR+ Sbjct: 64 IAHADVPAARLEVSAWRGALNNFL--PPEIRVLRVSRAAPDFHARFHARGKIYTYRMWNA 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIHCQASSPIRTIDHFD 176 LE GRAW +P LD + +R AQ L G+HDF F R+ A +RTI H Sbjct: 122 SYLHPLEIGRAWHMPSKLDLDILRQGAQMLEGKHDFAGFAANRAPGYAAEDTVRTIQHIC 181 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+L+ +R FL+ +R G+L G+ T +++ L + K+ AP Sbjct: 182 LTRRGDLLNLRFEGNGFLYKMVRLLTGTLVRCAQGRAELTFIKELLAGKGAKKTSFAAPA 241 Query: 237 EGLYFDSVEY 246 EGLY V Y Sbjct: 242 EGLYLTRVLY 251 >gi|153839728|ref|ZP_01992395.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] gi|149746752|gb|EDM57740.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] Length = 246 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 123/233 (52%), Gaps = 2/233 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVNRKMVAWTMGANA--NMPSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATA 231 >gi|242239994|ref|YP_002988175.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech703] gi|242132051|gb|ACS86353.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech703] Length = 275 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 136/247 (55%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 13 LKIALGIEYDGSRYYGWQRQAEVESVQECLEKALSNVANEPISVFCAGRTDAGVHATGQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 HF +NA+L SD I++ ++ VD+ FHARFSA R Y Y I R Sbjct: 73 VHFTTGAVRKDAAWTMGVNAHLP-SD-IAVRWVTTVDEAFHARFSATARRYRYVIYNHRY 130 Query: 121 APLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L G + +P LD M A Q L+G +DFT+FR++ CQ+ +P R + H V Sbjct: 131 RPAILSHGVTHYHLP--LDAARMERAGQCLLGENDFTSFRAVQCQSRTPWRNVKHLKVMR 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + + A +F+H +R+ VGSL VG G + + L A+DR A +GL Sbjct: 189 HGAYIVVDIKANAFVHHMVRNIVGSLMEVGCGNQPEGWIAELLAAKDRTLAAATARADGL 248 Query: 240 YFDSVEY 246 Y +V+Y Sbjct: 249 YLVAVDY 255 >gi|210623220|ref|ZP_03293659.1| hypothetical protein CLOHIR_01609 [Clostridium hiranonis DSM 13275] gi|210153757|gb|EEA84763.1| hypothetical protein CLOHIR_01609 [Clostridium hiranonis DSM 13275] Length = 243 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 5/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + ++YNG+ Y GWQ Q N IQG+IE AI +TGE V ++G+GRTD+GVHAL QVA+F Sbjct: 6 ITVQYNGANYCGWQEQPNSPGIQGNIEYAIKEITGEKVKINGSGRTDAGVHALGQVANFK 65 Query: 66 LVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +PV + ALN+ K+ ISI++ V+ +FHAR+SA + Y Y + + Sbjct: 66 -IESQIPVNRIPDALNS--KLPKDISIIDAEEVEDEFHARYSAKGKIYKYLVYNSRYRNP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + K ++ + LD E M+ A+ L+G +DF F S +RTI + +LI Sbjct: 123 ILKDISYQVKYDLDFEKMKKEAESLIGTYDFCGFMSSGSSVKDTVRTIKSVKIEKEDDLI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ +R G+L +G G+ T + +E +++QDR + G AP L+ V Sbjct: 183 VFEFEGNGFLYNMVRILSGTLIDIGRGRITES-MEDIIKSQDRSKAGHTAPGHALFLKKV 241 Query: 245 EY 246 Y Sbjct: 242 FY 243 >gi|156502494|ref|YP_001428559.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953826|ref|ZP_06558447.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica URFT1] gi|295312837|ref|ZP_06803569.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica URFT1] gi|166228698|sp|A7NCA0|TRUA_FRATF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156253097|gb|ABU61603.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FTNF002-00] Length = 258 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +F + P+ + +NA L I IL + V+ F++RF+AI R+Y Y I Sbjct: 61 IVNF-YSNAYRPLSAWQRGVNALL--PQDIKILAVQQVNNNFNSRFTAINRTYNYIIYNS 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 118 ATSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GL Sbjct: 178 QGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGL 237 Query: 240 YFDSVEY 246 YF VEY Sbjct: 238 YFVGVEY 244 >gi|326202743|ref|ZP_08192611.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] gi|325987327|gb|EGD48155.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] Length = 247 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y +I++Y+GS Y GWQ+ K+ SIQG IE + ++GE + V G GRTD+G HA Sbjct: 1 MKNYKIIVQYDGSKYKGWQKLKDSDLSIQGKIETVLSKMSGEEIQVIGCGRTDAGTHAEN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F P ++ L +L I + ++ VD++FHA+ +A ++Y+Y I Sbjct: 61 YVANFHTNSRMSPKLILNHLYEFL--PQDIVVRSVEEVDERFHAQHNAKAKTYVYSITKG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ + LD M+ AA++L+G HDF +F S+ + S IRTI+ D+ Sbjct: 119 KFRNVFNRKYSFHSEEKLDLVQMKNAAEYLIGTHDFQSFTSLKEGSKSTIRTINSLDIIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +IEI + FL R VG+L VG K + D++K L + R E P+A P+GL Sbjct: 179 NGMVIEIIINGNDFLLHMARLVVGALLEVGKNKIKAIDVQKILNEKKRTEAVPMAQPKGL 238 Query: 240 YFDSVEYS 247 V+YS Sbjct: 239 CLRDVKYS 246 >gi|148993376|ref|ZP_01822893.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP9-BS68] gi|168488681|ref|ZP_02712880.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP195] gi|147927931|gb|EDK78951.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP9-BS68] gi|183572616|gb|EDT93144.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP195] gi|332072441|gb|EGI82924.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17570] Length = 249 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-- 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLI 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|312277540|gb|ADQ62197.1| tRNA pseudouridine synthase A [Streptococcus thermophilus ND03] Length = 248 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 134/250 (53%), Gaps = 7/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + L +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLSQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L M+ AA LVG HDFT F + + +RTI V S Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASV-S 177 Query: 180 FGNLIEIRVVARS---FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V A S FL+ Q+R+ VG+L +G+G+ + + L+++DR GP Sbjct: 178 IDEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQAKTVLESRDRNLAGPTVAG 237 Query: 237 EGLYFDSVEY 246 GLY + Y Sbjct: 238 NGLYLKEIRY 247 >gi|312862611|ref|ZP_07722852.1| tRNA pseudouridine synthase A [Streptococcus vestibularis F0396] gi|311101871|gb|EFQ60073.1| tRNA pseudouridine synthase A [Streptococcus vestibularis F0396] Length = 249 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + L +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L M+ AA LVG HDFT F + + +RTI V Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESCDRNLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|168493506|ref|ZP_02717649.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC3059-06] gi|183576362|gb|EDT96890.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC3059-06] Length = 249 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E MR A + L G HDFT F + IRTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLT 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEICYE 248 >gi|295093425|emb|CBK82516.1| pseudouridylate synthase I [Coprococcus sp. ART55/1] Length = 247 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ Y Y+G+ Y GW+ + N +++G IE + + V +HGAGRTD+GVHA Sbjct: 1 MVNYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLTRMVDAKVDIHGAGRTDAGVHARAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ L + P + LN YL I L++++ +FHAR +A + Y Y + Sbjct: 61 VANGRLETDKTPEEIKDYLNRYLPAD--ICALDVAVAGDRFHARLNATGKVYEYTLYVGA 118 Query: 121 APLALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ W +P+ +LD + M+ AA +LVG+HDF +F + S +RTI D+ Sbjct: 119 EKPVFDRNYVWCVPQGSALDVDVMKKAASYLVGKHDFRSFCGNNKMKKSTVRTIYDVDIV 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + +R FL +R G+L VG G ++ + + + DR+ GP APP G Sbjct: 179 KEGDYVRMRFHGNGFLQNMVRILTGTLVEVGYGNMSAEHIPEIIAGMDRQLAGPTAPPHG 238 Query: 239 LYFDSVEYS 247 L VEY Sbjct: 239 LCLMKVEYD 247 >gi|328676060|gb|AEB28735.1| tRNA pseudouridine synthase A [Francisella cf. novicida 3523] Length = 258 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQAELEKALSKIANRNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL V+ F++RF+AI R+Y Y I Sbjct: 61 VVNFHSDADRPLSAWQRGANALL--PHDIKILAAQEVNDDFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKLVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|325294776|ref|YP_004281290.1| tRNA pseudouridine synthase A [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065224|gb|ADY73231.1| tRNA pseudouridine synthase A [Desulfurobacterium thermolithotrophum DSM 11699] Length = 250 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 129/243 (53%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY G+ YFGWQ +IQG I K + + V + GA RTD+GVHA QVA+F Sbjct: 6 LTIEYLGTNYFGWQILPEKPTIQGEIIKVLERILQHPVKLTGASRTDAGVHAFGQVANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +E L ALN L I I+++ V +F +R A + Y YRI R+ P Sbjct: 66 TKKEIPLYKLQSALNGLL--PPDIKIISVEEVPLEFDSRRWAKGKRYRYRIFNRKVPSPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 E R+W +P LD M A + L+G DFT+F +S +P+RT+D+ ++ + I Sbjct: 124 EYKRSWFVPYQLDISLMEKAKEFLIGTFDFTSFSKSDRNVDINPVRTVDNIEIVKKESHI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + RSFL +R V +L VG GK D+++ + ++RK LAPP+GLY + V Sbjct: 184 DFIFYGRSFLRHMVRIMVATLVEVGKGKLRPEDIKEIREKKNRKFAPFLAPPDGLYLEKV 243 Query: 245 EYS 247 Y Sbjct: 244 YYD 246 >gi|149006661|ref|ZP_01830347.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP18-BS74] gi|147761576|gb|EDK68540.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP18-BS74] Length = 249 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFDGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-- 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLI 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|294506655|ref|YP_003570713.1| tRNA pseudouridine synthase A [Salinibacter ruber M8] gi|294342983|emb|CBH23761.1| tRNA pseudouridine synthase A [Salinibacter ruber M8] Length = 265 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 131/250 (52%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IEY+G+ + GWQ Q ++QG++E+A+ V G V G+GRTD+GVHA Q Sbjct: 1 MPRYRFLIEYDGTDFHGWQIQPTVPTVQGALEEAVDTVVGTACRVAGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL P L +LN D +++ + FHAR+ A RR Y Y + T+ Sbjct: 61 VAHVDLPETRDPYRLRGSLNGL--TPDAVAVRRVERAPDDFHARYDACRRRYHYHLHTQ- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF---DV 177 P AL + + D +R AA L+GRH+F++F + + + T+ H D Sbjct: 118 -PCALGRRARTPVRPVPDFGRIRAAAPDLLGRHNFSSFCLTQSETENRVCTLTHLRWVDE 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + VV FLH +R+ VG+L +G K + L L A+DR+ GP PPE Sbjct: 177 ARRG-CWRVEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPE 235 Query: 238 GLYFDSVEYS 247 GL ++V Y Sbjct: 236 GLVLEAVRYE 245 >gi|46931324|gb|AAT06466.1| At1g09800 [Arabidopsis thaliana] Length = 372 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/314 (30%), Positives = 153/314 (48%), Gaps = 70/314 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 56 RYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVC 115 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A R Sbjct: 116 HVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQER 175 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR+++ PL+ LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA SP+ Sbjct: 176 TYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPM 235 Query: 170 RTIDHFDV---------------------------------------------------- 177 R++D ++ Sbjct: 236 RSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTGG 295 Query: 178 NSFGNLIEIR---VVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +SFG R V ARS FL+ Q+R VG+LK VG G+ T +D+E+ L+A+ P Sbjct: 296 DSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKP 355 Query: 233 LAPPEGLYFDSVEY 246 +AP GLY V Y Sbjct: 356 MAPASGLYLARVRY 369 >gi|167627942|ref|YP_001678442.1| tRNA pseudouridine synthase A [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189029995|sp|B0U0B1|TRUA_FRAP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167597943|gb|ABZ87941.1| tRNA-pseudouridine synthase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 258 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL++ VD F++RF+A R+Y Y I Sbjct: 61 VVNFHSDADRNLSSWMRGTNALL--PQGIKILDIKEVDNDFNSRFTATNRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + L+ + M A ++L+G DFT+FRS CQ+++P R I + Sbjct: 119 ISSPILAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+F+GSL +G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNFIGSLLKIGLEFESPEWIKLVLEAKDRTKAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|42561874|ref|NP_172451.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|332190374|gb|AEE28495.1| tRNA pseudouridine synthase A [Arabidopsis thaliana] Length = 372 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/314 (30%), Positives = 153/314 (48%), Gaps = 70/314 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 56 RYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVC 115 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A R Sbjct: 116 HVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQER 175 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR+++ PL+ LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA SP+ Sbjct: 176 TYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPM 235 Query: 170 RTIDHFDV---------------------------------------------------- 177 R++D ++ Sbjct: 236 RSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTEG 295 Query: 178 NSFGNLIEIR---VVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +SFG R V ARS FL+ Q+R VG+LK VG G+ T +D+E+ L+A+ P Sbjct: 296 DSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKP 355 Query: 233 LAPPEGLYFDSVEY 246 +AP GLY V Y Sbjct: 356 MAPASGLYLARVRY 369 >gi|51971559|dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana] gi|51971573|dbj|BAD44451.1| unnamed protein product [Arabidopsis thaliana] Length = 368 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/314 (30%), Positives = 153/314 (48%), Gaps = 70/314 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 52 RYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVC 111 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A R Sbjct: 112 HVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQER 171 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR+++ PL+ LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA SP+ Sbjct: 172 TYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPM 231 Query: 170 RTIDHFDV---------------------------------------------------- 177 R++D ++ Sbjct: 232 RSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTGG 291 Query: 178 NSFGNLIEIR---VVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +SFG R V ARS FL+ Q+R VG+LK VG G+ T +D+E+ L+A+ P Sbjct: 292 DSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKP 351 Query: 233 LAPPEGLYFDSVEY 246 +AP GLY V Y Sbjct: 352 MAPASGLYLARVRY 365 >gi|331007056|ref|ZP_08330287.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC1989] gi|330419141|gb|EGG93576.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC1989] Length = 286 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY G + G+Q Q + ++Q ++E A+ LV E + + AGRTD+GVHA Sbjct: 24 MQRVALGIEYAGHVFHGFQSQPHDEKTVQSALENALSLVANEPIKLVCAGRTDAGVHATN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+ HFD + + + NA K+ D ++I V FH+RFSA R+Y Y I Sbjct: 84 QIVHFDTLAKRKDTAWLRGANA--KLPDGVAIRWAQDVSCDFHSRFSAKHRTYRYVIYNS 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL K +SLD + M A+Q LVGRHDF FR+ CQA++ IR + + V+ Sbjct: 142 RTHSALLKNFVTWDRRSLDIDAMAEASQALVGRHDFNAFRASQCQANNAIRDMHYIKVHR 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I I V A +FL+ +R+ VG L + G+ + ++ L+++DR+ G A P+GL Sbjct: 202 QNDFIVIEVQATAFLYHMVRNIVGVLSTIAAGEKPVSWAKEVLESKDRRCGGITASPDGL 261 Query: 240 YFDSVEY 246 Y +VEY Sbjct: 262 YLVAVEY 268 >gi|268318033|ref|YP_003291752.1| tRNA pseudouridine synthase A [Rhodothermus marinus DSM 4252] gi|262335567|gb|ACY49364.1| tRNA pseudouridine synthase A [Rhodothermus marinus DSM 4252] Length = 252 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/253 (38%), Positives = 138/253 (54%), Gaps = 14/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y ++IEY+G+ + GWQ Q+NG SIQ ++E+A+ +V E V V G+GRTD+GVHA Q Sbjct: 1 MPTYRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVLRERVRVVGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF R P L +LN L S I+I ++S+ FHAR+ A R Y Y + T Sbjct: 61 VAHFRTDRPVDPERLQGSLNGLLPPS--IAIRSVSLAPDDFHARYDARWRRYHYYVAT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT------IDH 174 P ALE+ W + + D E M AA L+G HDFTTF C+ + R + Sbjct: 117 VPCALERHLRWYLRPAPDFERMNRAACDLLGTHDFTTF----CRTQTATRNRTCTVYLAR 172 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + +VA FLH +R+ VG+L +G G+ L + L A+DR+ GP A Sbjct: 173 WVPDPRPGDWHFEIVADRFLHGMVRAIVGTLIEIGRGQRDIAALPELLAARDRRLAGPAA 232 Query: 235 PPEGLYFDSVEYS 247 P GL ++V Y Sbjct: 233 PAHGLVLEAVGYE 245 >gi|148548973|ref|YP_001269075.1| tRNA pseudouridine synthase A [Pseudomonas putida F1] gi|148513031|gb|ABQ79891.1| tRNA pseudouridine synthase A [Pseudomonas putida F1] Length = 332 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 131/253 (51%), Gaps = 19/253 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ +G S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 66 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 125 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R W + + IS++ + FHARF A R Y Y I Sbjct: 126 VHFDTRAVRDERAWT-------MGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVI 178 Query: 117 IT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R A LA E W + LD + M AAQ L+G HDF+ FR+ CQA SPI+ I Sbjct: 179 YNDPIRPAHLAEEV--TWNH-RPLDVDRMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIY 235 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 H V G +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G Sbjct: 236 HLRVTRHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVT 295 Query: 234 APPEGLYFDSVEY 246 A P GLY VEY Sbjct: 296 AHPYGLYLVQVEY 308 >gi|224542274|ref|ZP_03682813.1| hypothetical protein CATMIT_01449 [Catenibacterium mitsuokai DSM 15897] gi|224524816|gb|EEF93921.1| hypothetical protein CATMIT_01449 [Catenibacterium mitsuokai DSM 15897] Length = 245 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I+ Y+G+ ++GWQ Q + ++Q I+KAI+ +T E V +H +GRTD+GVHA+ QV Sbjct: 1 MRIKCIVTYDGTHFYGWQIQPDKRTVQEEIQKAIYKITHEEVTIHSSGRTDAGVHAVGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ +E +ALN +L D I I + IVD+ FHAR+SA ++ Y Y + T+ Sbjct: 61 FHFDINKEIPEKQWIRALNNFL--PDDIYIKDSFIVDESFHARYSAKKKEYRYLVSTKPY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +E+ + +SLD E MR A+ +G HDF +F + IR I+ D+ Sbjct: 119 N-PIERLYVYQHNRSLDIEAMRECAKIFLGEHDFASF-CVFNGLGDTIRVIETIDIQEKD 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ +R + F +R G+L VG T +E L ++ +K+C A PEGLY Sbjct: 177 GIVTMRFIGNGFRRYMVRLITGALIQVGSHWRTKEFVEDLLNSKGKKKCLFKAKPEGLYL 236 Query: 242 DSVEYS 247 V Y Sbjct: 237 QEVYYE 242 >gi|254253654|ref|ZP_04946971.1| Pseudouridylate synthase [Burkholderia dolosa AUO158] gi|124898299|gb|EAY70142.1| Pseudouridylate synthase [Burkholderia dolosa AUO158] Length = 271 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + NA+L S +++ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTDLDRADFSWVRGTNAFLPPS--VAVQWAKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA + LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWVHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 GHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRDLAAPTFMADGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAHVGY 244 >gi|255526720|ref|ZP_05393623.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|255509607|gb|EET85944.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 249 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 7/246 (2%) Query: 6 MIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+I+Y+GS Y GWQ+Q + S+IQ IE + +TGE + V G GRTD+GVHA Sbjct: 6 MLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGVHAENY 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + K L +L + I + +L ++FHAR++A ++YLY I + Sbjct: 66 VANFHTDSILTVEDMLKYLYEFL--PEDIVVKSLRDTSERFHARYNAKSKTYLYTINNNK 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ + ++L+ MR AA+ L G HDF +F S+ S +RTI++ + Sbjct: 124 FRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTKSTVRTINYISITEE 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I I V SFL +R VG+L VG G +D+EK L + R E GP+A +GL Sbjct: 184 HGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPMAAAKGLC 243 Query: 241 FDSVEY 246 ++Y Sbjct: 244 LKDIQY 249 >gi|332141777|ref|YP_004427515.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Deep ecotype'] gi|327551799|gb|AEA98517.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Deep ecotype'] Length = 264 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 128/251 (50%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ +GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA Q Sbjct: 1 MGRIALGIEYDGAAVYGWQRQREVPSVQEHLEKALSTVANEPIEVQCAGRTDAGVHATGQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HF+ R W L + +++++ V FHARFSA R Y Y Sbjct: 61 VVHFNCDAPRSERAWT-------LGVNANLPNSVAVTWAKNVADDFHARFSATHRRYRYV 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + A+ I + LD + M +AAQ L+G DFT+FR+ CQ+ +P R + + Sbjct: 114 IHNAKMRPAILSSGVTHIHRELDEKKMHLAAQALLGEQDFTSFRAALCQSKTPFRNVTNV 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G + I + A +FLH +R+ G+L +G G+ + L +DR + A Sbjct: 174 GVYRQGRYVIIDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAK 233 Query: 236 PEGLYFDSVEY 246 P GLY V Y Sbjct: 234 PNGLYLVDVTY 244 >gi|223935594|ref|ZP_03627510.1| tRNA pseudouridine synthase A [bacterium Ellin514] gi|223895602|gb|EEF62047.1| tRNA pseudouridine synthase A [bacterium Ellin514] Length = 270 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 137/249 (55%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +++ + I Y+G Y GWQ QK+G +Q +E+A+ + + +H + RTD+GVHA+ V Sbjct: 4 LKFKLTIAYDGKNYSGWQVQKSGIGVQQRVEEALTKLFPSVGRIHSSSRTDTGVHAIGMV 63 Query: 62 AHFDLVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AH ++ + + L A+NA+L + I +++ V FHARF A + Y Y + Sbjct: 64 AHMEIPKAEFRMTSEKLALAINAHL--PEDIRVMSAQKVAADFHARFDAAGKQYRYFVWN 121 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDV 177 + A L + +AW +PK LD + MR AA+ G+HDF +F S + + S +RT+ D+ Sbjct: 122 QTAMNPLLREQAWQVPKELDLKAMRSAAKLFPGKHDFRSFAASRNYEVESTVRTLARCDI 181 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+L+ + FL+ R VG+L VG GK + D++K L+ +DR+ G AP Sbjct: 182 KKSGSLLTFIIEGDGFLYKMCRGIVGTLVQVGQGKIAAADIKKILETRDRRVAGMTAPAH 241 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 242 GLVLWKVFY 250 >gi|171321983|ref|ZP_02910866.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MEX-5] gi|171092713|gb|EDT37998.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MEX-5] Length = 270 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 10/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--HG--AGRTDSGVHA 57 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ GE V H AGRTD+GVH Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERAL----GEFACVPLHTTVAGRTDTGVHG 56 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 57 LGQVVHFDTDLDRTDFSWVRGTNAFLP--STVSVQWAKPMADTFHARFAAFERTYYYVLY 114 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 115 VHPVRSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDV 174 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ I R A +FLH +R+ +G L VG G++ + L L +DR P + Sbjct: 175 RRAGHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMAD 234 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 235 GLYLAHVGY 243 >gi|313499900|gb|ADR61266.1| TruA [Pseudomonas putida BIRD-1] Length = 284 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 129/251 (51%), Gaps = 15/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ +G S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 18 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQV 77 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R W + + IS++ + FHARF A R Y Y I Sbjct: 78 VHFDTRAVRDERAWT-------MGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVI 130 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P L + W + LD + M AAQ L+G HDF+ FR+ CQA SPI+ I H Sbjct: 131 YNDPIRPAHLAEEVTW-NHRPLDVDRMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIYHL 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G A Sbjct: 190 RVTRHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAH 249 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 250 PYGLYLVQVEY 260 >gi|172062883|ref|YP_001810534.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MC40-6] gi|238692865|sp|B1Z1N7|TRUA_BURA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171995400|gb|ACB66318.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MC40-6] Length = 270 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 135/249 (54%), Gaps = 10/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHG--AGRTDSGVHA 57 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ GE V +H AGRTD+GVH Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERAL----GEFACVPLHTTVAGRTDTGVHG 56 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 57 LGQVVHFDTDLDRTDFSWVRGTNAFLP--STVSVQWAKPMPDTFHARFAAFERTYYYVLY 114 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 115 VHPVRSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDV 174 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ I R A +FLH +R+ +G L VG G++ + L L +DR P + Sbjct: 175 RRSGHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRTLAAPTFMAD 234 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 235 GLYLAHVGY 243 >gi|154483152|ref|ZP_02025600.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC 27560] gi|149735960|gb|EDM51846.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC 27560] Length = 246 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ Y GWQ Q NG +++ + KA+ + E + V GA RTDSGVHA+ Sbjct: 1 MKRVRLIIAYDGTNYCGWQVQINGITVEEVLNKALKDLLNEEIAVIGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN ++ + I I V +H R+ ++Y Y+I+ R+ Sbjct: 61 VAVFDTETRIPAEKISFALNQ--RLPNDIRIQKSDEVPLDWHPRYRDSTKTYEYKILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L++ + LD + M+ AA+++VG HDF +F S Q S +RT+ VN Sbjct: 119 FPDPLQRFYTHFMYMPLDEQKMKEAAEYIVGEHDFASFCSAGSQVDSTVRTVYSLSVNKR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I IR+ FL+ +R VG+L VG G + +++ ++A+DR GP AP GL Sbjct: 179 DDVISIRITGNGFLYNMVRIIVGTLIKVGLGVYPPEHVKEIIEAKDRYVAGPKAPACGLT 238 Query: 241 FDSVEYS 247 +EYS Sbjct: 239 LVGIEYS 245 >gi|115358097|ref|YP_775235.1| tRNA pseudouridine synthase A [Burkholderia ambifaria AMMD] gi|122321799|sp|Q0BAC2|TRUA_BURCM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115283385|gb|ABI88901.1| tRNA pseudouridine synthase A [Burkholderia ambifaria AMMD] Length = 270 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 10/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHG--AGRTDSGVHA 57 +R + ++Y+G+ + GWQ Q +G ++Q ++E+A+ GE V +H AGRTD+GVH Sbjct: 1 MRIALGVQYDGAAFCGWQAQPHGKTVQDALERAL----GEFACVPLHTTVAGRTDTGVHG 56 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + + NA+L T+S+ + + FHARF+A R+Y Y + Sbjct: 57 LGQVVHFDTDLDRTDFSWVRGTNAFLP--STVSVQWAKPMPETFHARFAAFERTYYYVLY 114 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 115 VHPVRSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDV 174 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ I R A +FLH +R+ +G L VG G++ + L L +DR P + Sbjct: 175 RRSGHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRTLAAPTFMAD 234 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 235 GLYLAHVGY 243 >gi|108758714|ref|YP_633269.1| tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] gi|30913405|sp|Q93NE2|TRUA_MYXXA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14517923|gb|AAK64428.1|AF377337_4 pseudouridine synthase TruA [Myxococcus xanthus] gi|108462594|gb|ABF87779.1| tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] Length = 265 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY G+ Y GWQ Q NG SIQ +E + + G V V AGRTD+GVHA Q Sbjct: 1 MPRLKLTLEYEGTRYVGWQVQPNGPSIQSVLESGLERLLGARVSVASAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD R LN L +++++ V + F R + + Y YR+ R+ Sbjct: 61 VACFDSPRVLPMKAYVMGLNGLL--PPDVAVVDAVEVAEDFDPRRWSRGKRYRYRVSNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 L + W + LD E MR AA HL+GRHDF+ FR+ CQA +R I V + Sbjct: 119 TRSPLRRMTHWEVFAPLDVEAMRQAAAHLLGRHDFSAFRAADCQAKHAVREIRSLAVEGT 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + V +FL +R+ G+L VG G+ ++ + + L +Q+RK GP APP+GL Sbjct: 179 SGDAVSFVVEGTAFLKHMVRNLAGTLVEVGKGRRPASWVAEVLASQERKRAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 VLEEVFY 245 >gi|225857220|ref|YP_002738731.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae P1031] gi|254764871|sp|C1CLU3|TRUA_STRZP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225725422|gb|ACO21274.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae P1031] Length = 249 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQIDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-- 176 P + + A P LD E M+IA + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLI 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|206562845|ref|YP_002233608.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia J2315] gi|198038885|emb|CAR54847.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia J2315] Length = 271 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELEREVFSWVRGTNAFLP--PTVSVQWAKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA I LD + MR AA +L+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWIHTPLDDDAMRAAAAYLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 GHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAHVGY 244 >gi|309798794|ref|ZP_07693058.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1302] gi|308117611|gb|EFO55023.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1302] Length = 249 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IE + L G+ + +HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEITLTKLNKGQAITIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M++A + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHYPYPLDVERMQLAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLR 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|325282723|ref|YP_004255264.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP] gi|324314532|gb|ADY25647.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP] Length = 294 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 129/249 (51%), Gaps = 7/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + ++GS Y GWQ Q N S+Q ++ A+ + E AGRTD+GVHAL A Sbjct: 32 RVLLTVAWDGSAYGGWQSQPNAPSVQDTLHAALNRLGLEAARPVAAGRTDAGVHALNMPA 91 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H DL +P AL ++ ++++L+ FHARFS +R YLY+I+ A Sbjct: 92 HVDLHAPRIPPERL-ALALARQLPRSVAVLSAQAAPAGFHARFSCTQRRYLYQILNAPAR 150 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS--- 179 LE+GR+ + LD M AAQHL+G HDF F + + + +R + V + Sbjct: 151 HPLEEGRSLWVRGQLDLSAMNAAAQHLIGLHDFAAFATKEDRQT--VRELQRLAVTASPL 208 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +G + + VV SFL +R VG+L VG GK + + L + DR++ G P+G Sbjct: 209 PYGQRVTLAVVGESFLRHMVRGLVGTLIAVGQGKLAPEAVAEILASGDRRQAGINVAPDG 268 Query: 239 LYFDSVEYS 247 LYF Y+ Sbjct: 269 LYFAGAGYA 277 >gi|33592579|ref|NP_880223.1| tRNA pseudouridine synthase A [Bordetella pertussis Tohama I] gi|42559761|sp|Q7U363|TRUA_BORPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33572225|emb|CAE41775.1| tRNA pseudouridine synthase A [Bordetella pertussis Tohama I] gi|332381997|gb|AEE66844.1| tRNA pseudouridine synthase A [Bordetella pertussis CS] Length = 270 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 137/248 (55%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q +E A+ F G V AGRTD+GVHA Sbjct: 1 MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L S I + V + FHARFSA R+Y+Y + Sbjct: 61 MQVIHLDTDLQRRDESWVRGVNAFLPPS--IVVQWARPVSEAFHARFSARSRTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA + LD MR AA+ L+G HDF++FRS CQA P+RT+ D++ Sbjct: 119 GRVRPALWAGRAGWAFQPLDVPAMRAAARALLGEHDFSSFRSSQCQARHPVRTLHRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L VG G+ ++ L A+DR+ P P+G Sbjct: 179 ERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGREPVAWMDALLCARDRRLGAPTFMPDG 238 Query: 239 LYFDSVEY 246 LY ++EY Sbjct: 239 LYLSAIEY 246 >gi|307702068|ref|ZP_07639075.1| tRNA pseudouridine synthase A [Streptococcus mitis NCTC 12261] gi|307616555|gb|EFN95745.1| tRNA pseudouridine synthase A [Streptococcus mitis NCTC 12261] Length = 249 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQTHARSVQEEIEKTLTRLNKGKAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+ A + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLR 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|33519947|ref|NP_878779.1| tRNA pseudouridine synthase A [Candidatus Blochmannia floridanus] gi|42559760|sp|Q7U356|TRUA_BLOFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33504293|emb|CAD83185.1| tRNA pseudouridine synthase A [Candidatus Blochmannia floridanus] Length = 252 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 129/239 (53%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 +EY+GS Y GWQ+QK SSIQ +E A+ V+ E ++V GRTDSGVHAL Q+ HF+ Sbjct: 8 VEYDGSMYCGWQKQKCVSSIQSCLEYALSKVSSESILVFCGGRTDSGVHALEQIVHFETQ 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + +N +L + I + +S VD FHARFSAI R Y Y I + A+ Sbjct: 68 LKCSRSAWTLGVNCHLP--NDICVRWVSEVDNSFHARFSAISRRYCYFIYNNRIRSAVFC 125 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 R W + LD M AAQ+L+G +DF+ FRS Q+ S R I H V G+ + I Sbjct: 126 KRVWSYSRFLDVNKMSKAAQYLLGENDFSVFRSSGSQSCSTNRNIYHLRVIRQGHYVVID 185 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +FL+ +R+ VGSL VG G T + + L+ AP GLY ++Y Sbjct: 186 IRANAFLYRMVRNIVGSLVEVGCGNKPVTWILELLKNYRGSLNRITAPASGLYLVEIKY 244 >gi|107026755|ref|YP_624266.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia AU 1054] gi|116692053|ref|YP_837586.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia HI2424] gi|170735954|ref|YP_001777214.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia MC0-3] gi|123370548|sp|Q1BM62|TRUA_BURCA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123464580|sp|A0AZ67|TRUA_BURCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688629|sp|B1K370|TRUA_BURCC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|105896129|gb|ABF79293.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia AU 1054] gi|116650053|gb|ABK10693.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia HI2424] gi|169818142|gb|ACA92724.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia MC0-3] Length = 270 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLEREVFSWVRGTNAFLP--STVSVQWAKPMPDTFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|257452870|ref|ZP_05618169.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|317059412|ref|ZP_07923897.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|313685088|gb|EFS21923.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] Length = 251 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 128/245 (52%), Gaps = 9/245 (3%) Query: 8 IEYNGSGYFGWQR---QKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHALRQV 61 IEY G+ Y GWQR ++ +IQG IE+ + F + E V V +GRTD+GVHA Q+ Sbjct: 10 IEYEGTRYLGWQRLGEKQREKTIQGKIEQVLARLFALNPEEVSVIASGRTDAGVHAKEQI 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+ L P + + N YL + I I + V++ FH+RF A + Y Y I + Q Sbjct: 70 ANVHLPSGKSPQEIEEYCNQYL--PEDIRIFHAHFVEELFHSRFHAKTKEYHYEI-SLQK 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + W P LD E M+ ++Q+ +G HDF F S+ S IR ID ++ Sbjct: 127 PSVFHRNVTWYCPMQLDIEKMKESSQYFLGEHDFIAFSSLKKTKKSTIRRIDRIEIQETE 186 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R V FL IR VG+L VG+GK T D+ Q++ R++ G LAP +GL Sbjct: 187 SGLLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKTRQKAGFLAPAKGLTL 246 Query: 242 DSVEY 246 V Y Sbjct: 247 YKVYY 251 >gi|158320711|ref|YP_001513218.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] gi|158140910|gb|ABW19222.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] Length = 245 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 132/242 (54%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++IEY+GS Y GWQR K+ +IQG IEK + +TG V + G+GRTD+GVHA Q+A+F Sbjct: 6 LVIEYDGSRYDGWQRLKDSEQTIQGKIEKVLNEMTGSSVEIIGSGRTDAGVHAKNQIANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +N YL I + + V +FH+R++A ++ Y Y + + P A Sbjct: 66 KTKSSMSIRDIHNYMNHYL--PQDIVVKEVKEVSDRFHSRYNAQKKKYTYYVWNHRIPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ ++ P++LD + M AA L+G HDF F S+ S +RTI+ + +++ Sbjct: 124 FQRKYSYYFPETLDLQRMEAAANQLLGTHDFIGFSSVKKAKKSTVRTIEEITIVQNNHML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E + FLH IR +G+L +G + + +++ ++ R G AP +GL+ + V Sbjct: 184 EFSFIGDGFLHNMIRILMGTLLEIGTREKDISCIDEIFTSKTRAMAGKTAPAQGLFLEEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|259502563|ref|ZP_05745465.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041] gi|259169515|gb|EEW54010.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041] Length = 256 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/253 (35%), Positives = 137/253 (54%), Gaps = 11/253 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q + +++ ++ A+ + V V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKHPDPPVSVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + + KALN+ L + I + VD+ FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDIPYQLSDEAMRKALNSLLPLD--ILVKKAERVDENFHARYSAHRKTYRYRVD 118 Query: 118 TRQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P + +P +D E MR+AA+ +G HDFT+F + QA S +RT++ Sbjct: 119 QGDFVDPFKRNYTAHYKVP--VDIEKMRLAAKDFIGEHDFTSFVASGSQAKSNVRTVEKI 176 Query: 176 DVN--SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 VN N + FL+ QIR V L VG G+ +D+++ L A+DR + Sbjct: 177 TVNRDPAQNEVVFEFTGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQARMT 236 Query: 234 APPEGLYFDSVEY 246 AP GLY SV+Y Sbjct: 237 APASGLYLVSVDY 249 >gi|283796516|ref|ZP_06345669.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|291075930|gb|EFE13294.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|295092580|emb|CBK78687.1| pseudouridylate synthase I [Clostridium cf. saccharolyticum K10] Length = 368 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 131/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + +A+ + E + V GA RTDSGVHA+ Sbjct: 1 MKRIRLTVAYDGTNYCGWQLQPNGITIEEVLNRALSELLKEEIQVVGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD P +C ALN ++ + + + V FH R + ++Y Y+I+ R+ Sbjct: 61 IAVFDTESRIPPEKICFALNQ--RLPEDVRVQKSEEVPLTFHPRKANCVKTYEYKILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 + L + LD E MR AA LVG HDF +F ++ QA +RTI V+ Sbjct: 119 IDMPLNRLYCHFCYFDLDVEKMRRAAAFLVGEHDFKSFCTVRTQAEETVRTIYSLTVDRG 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IR+ FL+ +R G+L +G G W +E+ L+A+DR GP P +GL Sbjct: 179 ADDVIVIRISGSGFLYNMVRIITGTLVKIGMGVWPPEYMEEILEARDRAAAGPTIPAKGL 238 Query: 240 YFDSVEYS 247 S+EY Sbjct: 239 TLVSMEYE 246 >gi|116627085|ref|YP_819704.1| tRNA pseudouridine synthase A [Streptococcus thermophilus LMD-9] gi|122268312|sp|Q03MR4|TRUA_STRTD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116100362|gb|ABJ65508.1| Pseudouridylate synthase [Streptococcus thermophilus LMD-9] Length = 248 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 134/250 (53%), Gaps = 7/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + L +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGIPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L M+ AA LVG HDFT F + + +RTI V S Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASV-S 177 Query: 180 FGNLIEIRVVARS---FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V A S FL+ Q+R+ VG+L +G+G+ + + L+++DR GP Sbjct: 178 IDEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQAKTVLESRDRNLAGPTVAG 237 Query: 237 EGLYFDSVEY 246 GLY + Y Sbjct: 238 NGLYLKEIRY 247 >gi|239825725|ref|YP_002948349.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70] gi|259550397|sp|C5D3U9|TRUA_GEOSW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239806018|gb|ACS23083.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70] Length = 248 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 3/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G+ +FG+Q Q ++QG +E+ + + G+ + V +GRTD+GVHA QV HFD Sbjct: 9 LSYDGTHFFGYQIQPGKRTVQGELERVLEQMHKGKAIRVTASGRTDAGVHAYGQVIHFDT 68 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 P KALNA ++ D I I ++ D FHARFSA + Y Y++ Q Sbjct: 69 FLSLSPDQWKKALNA--QLPDDIVIKDVQEADPSFHARFSAKAKEYRYKVRIAQERDVFL 126 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + + P LD E MR A + + G HDFT+F S +RTI D+ +L+E Sbjct: 127 RNYCYHYPYPLDMEAMRHALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMAMHDDLLEF 186 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + FL+ +R VG++ VG GK + + A +A+DR+ G APP+GLY V Y Sbjct: 187 CFIGNGFLYNMVRIIVGTILEVGQGKRSIDSISHAFEAKDRQFAGKTAPPQGLYLWKVYY 246 Query: 247 S 247 Sbjct: 247 D 247 >gi|289167524|ref|YP_003445793.1| tRNA pseudouridine synthase A [Streptococcus mitis B6] gi|288907091|emb|CBJ21925.1| tRNA pseudouridine synthase A [Streptococcus mitis B6] Length = 249 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + E + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKEQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYTKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E MR A + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLT 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|332664422|ref|YP_004447210.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] gi|332333236|gb|AEE50337.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] Length = 256 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M ++ + +EY+GS + GWQ Q++ SIQG + KA +V + V V+G+GRTD+GVHAL Sbjct: 1 MAKFKLTLEYDGSRFKGWQVQEDARSIQGQLIKAAKIVFETDKVEVYGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH + + ++ + LN L + I++L++ V +FHAR A+ RSY+Y+I R Sbjct: 61 QVAHLAVDTKMPVKMIRQKLNDQL--THDINVLSVDPVSDKFHARHDAVARSYVYQISRR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A K W + LD E M +AA HL+G HDF +F + S + H V Sbjct: 119 RN--AFGKHFMWWVKDPLDVERMNVAAAHLIGMHDFKSFSNEKGTEKSSKVELQHLKVVE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + ++A FL +R VGSL VG G+ ++ L+ ++ APP GL Sbjct: 177 KGDKVVVHIIASHFLWKMVRRVVGSLVEVGAGRLDPDKFKEWLEKPSQEPAKFTAPPAGL 236 Query: 240 YFDSVEY 246 + + V + Sbjct: 237 FLERVYF 243 >gi|290891783|ref|ZP_06554780.1| truA protein [Listeria monocytogenes FSL J2-071] gi|290558377|gb|EFD91894.1| truA protein [Listeria monocytogenes FSL J2-071] Length = 248 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 133/251 (52%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMNKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ KAL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEY 246 P+GLY V+Y Sbjct: 237 PQGLYLWRVDY 247 >gi|294637213|ref|ZP_06715519.1| tRNA pseudouridine synthase A [Edwardsiella tarda ATCC 23685] gi|291089602|gb|EFE22163.1| tRNA pseudouridine synthase A [Edwardsiella tarda ATCC 23685] Length = 275 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 126/240 (52%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV HF Sbjct: 21 IEYDGSRYAGWQRQQEVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVHFTTH 80 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA+L I++ + V FHARFSA R Y Y I R P L+ Sbjct: 81 ASRQEGAWTMGVNAHLP--KDIAVRWVKAVSADFHARFSATARRYRYVIYNHRYRPAVLQ 138 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 G LD E M A Q L+G +DF++FR+ CQ+ +P R + H VN +G + + Sbjct: 139 SGVTHFY-HPLDAERMARAGQALLGENDFSSFRAAQCQSRTPWRNVSHLWVNRYGPYVVV 197 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL VG G + + L A+DR A GLY +V+Y Sbjct: 198 DIKANAFVHHMVRNIVGSLLEVGCGNQPEGWIAELLAARDRTLAAATAKAAGLYLVAVDY 257 >gi|311070796|ref|YP_003975719.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942] gi|310871313|gb|ADP34788.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942] Length = 247 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 4/242 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQVAHFD 65 I Y+G + G+Q Q ++Q +EKA+ ++ + + V V +GRTDSGVHA QV HFD Sbjct: 7 ISYDGHLFNGYQVQPGKRTVQAELEKALAILHKSEDKVPVISSGRTDSGVHAAGQVIHFD 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALNA L I++ D FHARFSAI++ Y Y + T + P Sbjct: 67 TPLSIPAERWPYALNALL--PGDIAVKTAEHADDGFHARFSAIKKEYRYFVYTEKHPDVF 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 ++ A+ L+ + MR A++HL+G HDFT+F S + + +RTI D + ++ Sbjct: 125 KRHYAYHFSYRLNVQKMREASEHLIGTHDFTSFCSANTEVRDKVRTIYELDWTDTDDGLQ 184 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 +R+V FL+ +R G+L VG GK+++ D++ L A+DR+ G AP GLY V Sbjct: 185 MRIVGSGFLYNMVRIIAGTLLDVGTGKFSADDVKGMLDAKDREAAGRTAPGHGLYLWHVY 244 Query: 246 YS 247 Y Sbjct: 245 YD 246 >gi|322392372|ref|ZP_08065833.1| tRNA pseudouridine synthase A [Streptococcus peroris ATCC 700780] gi|321144907|gb|EFX40307.1| tRNA pseudouridine synthase A [Streptococcus peroris ATCC 700780] Length = 249 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY +I Y+G + G+QRQ + S+Q IEK + L G V +HGAGRTDSGVHAL Sbjct: 1 MTRYKAVISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGLGVTIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMEEEKLRFALDT--QSPEDIDVISVEIVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M+ A + L G HDFT F + +RTI Sbjct: 118 GRPKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLK 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|85713087|ref|ZP_01044122.1| tRNA pseudouridine synthase A [Idiomarina baltica OS145] gi|85693073|gb|EAQ31036.1| tRNA pseudouridine synthase A [Idiomarina baltica OS145] Length = 261 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G Y+GWQRQ+ S+Q +E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGRAYYGWQRQREVDSVQQRLENALSKVADQAVETVCAGRTDAGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + +N++L I++ VD F ARFSA R Y Y I Sbjct: 61 VHFDVSTQRRAAAWTLGVNSHLPPD--IAVRWAQPVDDSFSARFSATARRYRYIIANHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M+ A L+G HDF+ FR+ CQ+ S R I H +V+ G Sbjct: 119 RPGIHSHGVSHYHHPLDVDAMQAATPALLGEHDFSAFRAAQCQSHSAHREITHLNVHRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ VGSL ++G + + L + L +DR + A P GLY Sbjct: 179 DFIIVDIKANAFLHHMVRNIVGSLIVIGRHQQDPSWLGELLAGKDRTKAAATAKPGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|297849290|ref|XP_002892526.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp. lyrata] gi|297338368|gb|EFH68785.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp. lyrata] Length = 373 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/314 (30%), Positives = 152/314 (48%), Gaps = 70/314 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + IEY G+ + G Q+Q ++ G ++ A G+ V + + RTD+GVHAL V Sbjct: 57 RYLVAIEYIGTRFSGSQQQAKDRTVVGVLQDAFHKFIGQPVKIFCSSRTDAGVHALSNVC 116 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A R Sbjct: 117 HVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQER 176 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR++ PL+ LEK R W +P+ L+ +M+ A + LVG HDF++FR+ CQA SP+ Sbjct: 177 TYFYRLLAGSDPLSILEKDRCWHVPEELNPRSMQEACRVLVGYHDFSSFRAAGCQAKSPM 236 Query: 170 RTIDHFDV---------------------------------------------------- 177 R +D ++ Sbjct: 237 RYLDELNITEVPSTPYFPSITERAWSNLNNGDPLACSSQPKSETAGVTTNVGEVEGSTDG 296 Query: 178 NSFGNLIEIR---VVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +SFG R V ARS FL+ Q+R VG+LK VG G+ T +D+E+ L+A+ P Sbjct: 297 DSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKP 356 Query: 233 LAPPEGLYFDSVEY 246 +AP GLY V+Y Sbjct: 357 MAPASGLYLARVKY 370 >gi|170289026|ref|YP_001739264.1| tRNA pseudouridine synthase A [Thermotoga sp. RQ2] gi|238688847|sp|B1LB83|TRUA_THESQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170176529|gb|ACB09581.1| tRNA pseudouridine synthase A [Thermotoga sp. RQ2] Length = 245 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + K A+NA L D + + + V K FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKEVFEVSKNFHPRFDVKKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR AA++L G HDFT+F++ P+RTI + Sbjct: 119 KQKNVFLRKYVWWFPYELDLDAMRKAAKYLEGTHDFTSFKT-GSDERDPVRTIYRIRILR 177 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP G Sbjct: 178 LKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|297567108|ref|YP_003686080.1| tRNA pseudouridine synthase A [Meiothermus silvanus DSM 9946] gi|296851557|gb|ADH64572.1| tRNA pseudouridine synthase A [Meiothermus silvanus DSM 9946] Length = 259 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 133/257 (51%), Gaps = 13/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +E++G+ + G Q Q G ++Q ++E+A+ + G I V AGRTD+GVHAL Sbjct: 1 MRRIKLTVEFDGTHFAGLQTQAKGERTVQNTLEQALAQIPGAIPKVVAAGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H+D + P + ALN L + L V +FHAR S R+Y YRI+ R Sbjct: 61 MPLHYDTLDPIPPEKIPLALNGLL--PPDLRALAAEEVAPEFHARKSCHWRAYRYRILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---------RSIHCQASSPIR 170 + P AL + AW IP+ L+ MR A +HLVG HDF F R I+ +A + Sbjct: 119 KTPSALLRHYAWWIPQQLNLVAMRHALEHLVGEHDFKAFAVKEKRPTVRRIY-RAHLTVL 177 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T D I + V FL Q+RS VG+L VG GK S L + L+ R + Sbjct: 178 TPDIAQDAKNEREIHLEFVGSGFLRGQVRSMVGTLVEVGLGKRDSQSLGELLRTGTRSQA 237 Query: 231 GPLAPPEGLYFDSVEYS 247 GP APP+GLYF Y+ Sbjct: 238 GPTAPPQGLYFVGAGYA 254 >gi|258592098|emb|CBE68403.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [NC10 bacterium 'Dutch sediment'] Length = 263 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+G+ Y GWQ Q ++IQG+++ A+ + G+ V V GAGRTD+GVHA Q Sbjct: 1 MTTFKLTIEYDGTDYHGWQVQPGMTTIQGTLQGAVARIVGKDVHVMGAGRTDAGVHAHGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA P +AL + L SD I + + +D FHA++SA + Y Y ++TR Sbjct: 61 VASLRTEFHHPPDTFRRALTSVLP-SD-IVVTAVEEMDDDFHAQYSAQWKRYRYSLLTRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P A+E+ +P L + M +AA LVG HDF+ F++ H A SP+RT+ + Sbjct: 119 YPSAIERRYTLFVPYPLQTDAMAVAAGSLVGTHDFSAFQAAHSSAESPVRTVLVAEFRQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +VA FL IR +G+L +G G+ L + +DR + P GL Sbjct: 179 GDHLLFEIVADGFLRHMIRIIMGTLLDIGRGRLQVEALHIIREGRDRNQASKTISPHGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLEVGY 244 >gi|317131990|ref|YP_004091304.1| tRNA pseudouridine synthase A [Ethanoligenens harbinense YUAN-3] gi|315469969|gb|ADU26573.1| tRNA pseudouridine synthase A [Ethanoligenens harbinense YUAN-3] Length = 252 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 2/242 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++ ++G+ Y GWQ QKNG ++Q ++ A+ V V G RTD+GVHAL +F Sbjct: 6 LLLRFDGAAYHGWQVQKNGVTVQEVLQNALETVLRHRPPVTGCSRTDAGVHALAYACNFR 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L +ALNA L D I++ V FHAR+SA + Y+YRI+ A Sbjct: 66 TEHTIPCQNLVRALNACL--PDDIAVFACREVPPDFHARYSAHEKEYVYRILNAPARDPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 +GRA +P LD M AA+ +G HDF FR+ +RT+ H V G+L+ Sbjct: 124 WRGRALHVPYPLDEAVMDKAARGFLGTHDFAGFRAAGSDVKDTVRTVFHSGVQRDGDLVL 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 RV A FL+ +R VG+L K D+ + ++DR GP AP GLY + V Sbjct: 184 FRVRADGFLYNMVRIMVGTLLYTAQDKLQPADILAVIDSRDRTAAGPTAPAHGLYLNRVF 243 Query: 246 YS 247 Y Sbjct: 244 YD 245 >gi|306820983|ref|ZP_07454602.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550924|gb|EFM38896.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 245 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 5/241 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ Y GWQRQKN SIQ IE AI L+ E + V +GRTD+GVHAL Q+A+F Sbjct: 8 ISYDGTNYSGWQRQKNAISIQEKIEDAISLICNEEINVIASGRTDAGVHALSQIANFSTS 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 KA+N K+ D I IL+ VD+ F+ARFSA +++Y+Y I+ R+ Sbjct: 68 SSIDAKKFAKAINT--KLPDDIRILSSKEVDEDFNARFSAKKKTYIYHILNREIKNPFWD 125 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFD-VNSFGNLIE 185 + I + LD E M+ + L+G HDFT+F + + I+TI D V + +++ Sbjct: 126 KYSMHINRKLDLELMKSNSNMLIGTHDFTSFYTYEENNPKNTIKTIYSSDIVKIYEDILT 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG+L +G + + D+ + L +DR + G A +GL+ +VE Sbjct: 186 FSITGDGFLYNMVRIIVGTLIEIGLHQ-KNDDISQILMYKDRIKAGATAKAKGLFLKNVE 244 Query: 246 Y 246 Y Sbjct: 245 Y 245 >gi|168483521|ref|ZP_02708473.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1873-00] gi|172043050|gb|EDT51096.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1873-00] Length = 249 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYVFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E MR A + L G HDFT F + IRTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLT 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAP 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEICYE 248 >gi|221212470|ref|ZP_03585447.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD1] gi|221167569|gb|EEE00039.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD1] Length = 270 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFLP--PTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHVYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRNRAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|325913236|ref|ZP_08175605.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B] gi|325477500|gb|EGC80643.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B] Length = 260 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P + ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALM--PRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QHGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLYHVFYD 247 >gi|168178866|ref|ZP_02613530.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|226950899|ref|YP_002805990.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] gi|182670055|gb|EDT82031.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|226843785|gb|ACO86451.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] Length = 246 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 134/241 (55%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA + +F Sbjct: 8 LEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAKGYICNFF 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P L K +N L I +L+ +FH+RF + ++Y Y ++ P+A+ Sbjct: 68 TNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSSKPIAI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N G+ I+ Sbjct: 126 GRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEINKKGDFIK 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG+L +G K ++ ++++DR++ G P GL V Sbjct: 186 FIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRRKAGKCVPSSGLCLKEVF 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|225448126|ref|XP_002263416.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297739525|emb|CBI29707.3| unnamed protein product [Vitis vinifera] Length = 380 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/315 (30%), Positives = 149/315 (47%), Gaps = 71/315 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ + G Q+Q N ++ G++++A G+ V + + RTD+GVHAL V Sbjct: 63 RYLVAVEYIGTRFSGSQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVC 122 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L+ ++ + ++++ V FHAR+ A R Sbjct: 123 HVDVERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARER 182 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR+++ PL+ EK RAW +P+ LD M+ A + LVG HDF++FR+ CQA SPI Sbjct: 183 TYFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPI 242 Query: 170 RTIDHFDV-------------------------------------------------NSF 180 RT+D V N Sbjct: 243 RTLDELCVSEVLPTPYFPSITERAQNNFTEENPLACSNNAEVPDSPSTANHDRLDGFNGA 302 Query: 181 GNLIEIRVVARSFLHT---------QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 G +R R FL T Q+R VG +K VG G T +D+E+ L A+ Sbjct: 303 GQGFGVRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAAS 362 Query: 232 PLAPPEGLYFDSVEY 246 P+AP GLY +V Y Sbjct: 363 PMAPACGLYLGNVNY 377 >gi|241765867|ref|ZP_04763802.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN] gi|241364216|gb|EER59401.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN] Length = 289 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 134/263 (50%), Gaps = 24/263 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + YNG Y GWQ Q +G+++Q +E A+ T + V AGRTD+GVH L QV Sbjct: 18 TRVALGVSYNGQRYNGWQSQPSGNTVQDHLEAALGRFTTQQVSTLCAGRTDAGVHGLMQV 77 Query: 62 AHFD--LVR---EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD LVR WV + NA+L I++ V FHAR SA+ R Y Y + Sbjct: 78 VHFDTTLVRPDASWV-----RGTNAFLP--QDIAVQWARAVPSGFHARASAVARRYAYVL 130 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + ++E GR + +L+ + MR AA L+G HDFT+FR+ CQA SP++T+ D Sbjct: 131 LQSPVRPSVEAGRVGWVFNALNEDAMRQAALRLLGEHDFTSFRASACQAKSPVKTLQRID 190 Query: 177 V--------NSFGNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + ++ G A +FLH IR+ +GSL VG G + + + L A Sbjct: 191 ITRTPCPRASAAGEFDACYWRFEFEANAFLHHMIRNIMGSLVAVGKGTKPPSWISEVLDA 250 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 R P P+GLYF Y+ Sbjct: 251 HSRDAAAPTFSPDGLYFQGPVYA 273 >gi|254480499|ref|ZP_05093746.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2148] gi|214039082|gb|EEB79742.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2148] Length = 277 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 125/241 (51%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 IEYNG+ Y GWQ Q N ++Q +E A+ V + VH AGRTD+GVH Q+ HFD Sbjct: 16 IEYNGARYNGWQSQPHLNVLTVQQELESALSSVADHPLRVHCAGRTDTGVHGHCQIVHFD 75 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P NA ++ + + ++V + FHARF A+ R Y Y I A+ Sbjct: 76 APAARAPKAWVLGANA--SMAKDVRVHWATVVPESFHARFCAVARRYRYVIANTLVRPAV 133 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 G+ LD M AAQ L+G DF+ FR+ CQ++SP+R + V G+L+ Sbjct: 134 LVGQVSWYRYPLDAAIMDKAAQSLLGEQDFSAFRAAACQSNSPMRNVHSVAVRRIGDLVV 193 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A +FLH +R+ VGSL VG G+ + + L A+DR + A P GLY V Sbjct: 194 VDIQANAFLHHMVRNIVGSLLAVGSGRKPEAWIGQLLAARDRTQAADTAAPHGLYLADVL 253 Query: 246 Y 246 Y Sbjct: 254 Y 254 >gi|313606591|gb|EFR83384.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL F2-208] Length = 248 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 134/251 (53%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIITYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSDLDITAEKFQKALQVMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G+HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGKHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ KAL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEY 246 P+GLY V+Y Sbjct: 237 PQGLYLWRVDY 247 >gi|332982675|ref|YP_004464116.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON] gi|332700353|gb|AEE97294.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON] Length = 245 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 131/243 (53%), Gaps = 6/243 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + ++Y+G+ Y GWQ QKN +IQ +E+AI +TG+ V AGRTD GVHAL QV +F Sbjct: 7 LTLQYDGTAYAGWQYQKNALTIQQVVEEAIESLTGQHSTVIAAGRTDRGVHALGQVTNFK 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-- 123 ALNA L + I +++ V FHARF A + LYR I AP Sbjct: 67 TESNIPTDRWLYALNAVL--PEDIRVIDAQDVLPSFHARFDA--KGKLYRYIIWNAPYSS 122 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 AL + + + + LD + M+ AA + VG HDF++F++ +R I + + G + Sbjct: 123 ALLRNFSLHVARPLDADAMKRAALYFVGTHDFSSFQASGSTVRDTVRNIWDISIQTEGKM 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I I + FL+ +R VG+L VG GK T+ D + L+A+DRK G A P GLY Sbjct: 183 ISISISGDGFLYNMVRIMVGTLIDVGIGKITACDAKLILEARDRKRAGKTAGPHGLYLVE 242 Query: 244 VEY 246 V Y Sbjct: 243 VYY 245 >gi|170761533|ref|YP_001788787.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] gi|169408522|gb|ACA56933.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] Length = 246 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 132/241 (54%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QKN ++QG++EK I +T E V + G RTDSGVHA V +F Sbjct: 8 LEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITKEKVEIIGVSRTDSGVHAKGYVCNFF 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P L K +N L I +L+ V +FH+RF + ++Y Y ++ P+A+ Sbjct: 68 TNTRIPPENLQKVINNNL--PQDIVVLSSEEVSNEFHSRFCSKGKTYEYTVLNSPQPIAI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + L+ +NM+IA+++ +G HDF+ F++ + +RTI+ F+++ G+ I+ Sbjct: 126 GRNYIFQFKDKLNIDNMKIASRYFIGTHDFSAFKTKGSSVKTSVRTINEFEIDKKGDFIK 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG L +G K +E ++++DR++ G P GL V Sbjct: 186 FTITGDGFLYNMVRIIVGILIEIGLNKREPEYVEYVIKSKDRRKAGKCVPSSGLCLKEVF 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|78062974|ref|YP_372882.1| tRNA pseudouridine synthase A [Burkholderia sp. 383] gi|123728751|sp|Q393X8|TRUA_BURS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77970859|gb|ABB12238.1| Pseudouridylate synthase [Burkholderia sp. 383] Length = 270 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFD--LVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD L RE WV + NA+L T+++ + + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLDREVFSWV-----RGTNAFLP--STVAVQWAKPMPETFHARFSAFERTYYYAL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + D Sbjct: 114 YVHPVRSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQID 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ + R A +FLH +R+ +G L VG G++ + L L +DR P Sbjct: 174 VRRVGHFVHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMA 233 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 234 DGLYLAHVGY 243 >gi|313622273|gb|EFR92777.1| tRNA pseudouridine synthase A [Listeria innocua FSL J1-023] Length = 248 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 131/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG+FG+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF I + Y Y I Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEAQADFHARFGTIGKEYRYVIKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E M+ A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDIEKMKQASERLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ KAL A DR++ AP Sbjct: 177 YEEDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLISKTAP 236 Query: 236 PEGLYFDSVEYS 247 P+GLY V+Y Sbjct: 237 PQGLYLWRVDYE 248 >gi|309809150|ref|ZP_07703023.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D] gi|308170595|gb|EFO72615.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D] Length = 260 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P + ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALM--PRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QNGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQQARNTAPASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLYHVFYD 247 >gi|116515069|ref|YP_802698.1| hypothetical protein BCc_129 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256923|gb|ABJ90605.1| pseudouridylate synthase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 269 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +++ +EY+GS Y GWQ+QK+ +IQ IE A+ + + V AGRTD GVHA+ Q+ Sbjct: 1 MKFVFGVEYDGSIYHGWQKQKSVLTIQECIEHALSKIANSKIEVICAGRTDKGVHAITQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF + + LN+ L I++L L V FHARFSA+ RSY Y I R+ Sbjct: 61 VHFSSLIIRNEEVWFTGLNSLL--PKNITVLWLKKVSSNFHARFSALSRSYRYIIFNRKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K + + LD M+ ++Q L+G HDF++F+S CQ+ S + I + Sbjct: 119 RSSFLKNYYFHVRNFLDIYKMKTSSQFLIGNHDFSSFKSSGCQSFSSRKNIFSLIIYRIN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A SFL+ +R+ VG L LVG K ++ LQ +D K+ P +GLYF Sbjct: 179 DFIIIDITANSFLYHMVRNIVGCLILVGLSKKKPEWVQYILQKKDIKKTYSTVPAQGLYF 238 Query: 242 DSVEY 246 Y Sbjct: 239 LFASY 243 >gi|148245016|ref|YP_001219710.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii HA] gi|146326843|dbj|BAF61986.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 133/246 (54%), Gaps = 13/246 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK N ++Q IE+A+ V + V V +GRTD+GVHA Q Sbjct: 1 MKLALGVEYLGTHFHGWQCQKSNIRTVQQVIEQALSSVANQPVRVFCSGRTDTGVHATCQ 60 Query: 61 VAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HF+ + W+ + + ++ + VD FHARFS I R Y Y+ Sbjct: 61 VIHFETNIKRKNKAWL-------FGGNVHLPSDVNFTWVKPVDDNFHARFSVITRQYNYK 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + ++ + P+ LD M A Q+L G+H+F+ FR CQA SPI+ I+ Sbjct: 114 IHNTKIRSSIIATHSLWEPRKLDIVAMNKAGQYLTGKHNFSAFRGSLCQAKSPIKNIEFI 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I + + A +FLH +R+ VG+L VG G+ + + L ++ RK+ GP AP Sbjct: 174 KLTKHDDNILLDIKANAFLHHMVRNIVGTLLKVGKGEKPIEWVREVLNSKQRKQAGPTAP 233 Query: 236 PEGLYF 241 P+GLYF Sbjct: 234 PQGLYF 239 >gi|197302933|ref|ZP_03167984.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC 29176] gi|197298014|gb|EDY32563.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC 29176] Length = 297 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q N ++I+G + + +TG+ V V GA RTD+GVHA Sbjct: 26 MKRIRLTVAYDGTDYCGWQVQNNVATIEGELNTVLTQLTGQTVKVIGASRTDAGVHARGN 85 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P A+NA L + I +++ V +H R ++Y YR++ ++ Sbjct: 86 VAVFDTESSIPPERFLYAVNALL--PEDIVVVDSCEVAADWHPRHCNTEKTYEYRVLNQK 143 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + LD E MR AA +L G HDF +F ++H +RTI +V Sbjct: 144 LPDPMRRRDTYFVSFPLDLERMRQAAGYLEGEHDFKSFCNVHTHVEDTVRTIYRLEVIRE 203 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I RV FL+ +R G+L VG G ++ L+A+DR+ G PP+GL Sbjct: 204 ENVITFRVRGNGFLYNMVRILAGTLIGVGRGLIDPEEIPAMLEAKDRQAAGMTVPPQGLT 263 Query: 241 FDSVEY 246 ++Y Sbjct: 264 LMKIDY 269 >gi|168028382|ref|XP_001766707.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682139|gb|EDQ68560.1| predicted protein [Physcomitrella patens subsp. patens] Length = 331 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 151/304 (49%), Gaps = 60/304 (19%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ + G+QRQK ++QG +E A G+ V+ + RTD+GVHAL Sbjct: 11 RYLITVEYIGTRFLGFQRQKGKRTVQGCLESAFEKFIGQPVISAVSSRTDTGVHALANTC 70 Query: 63 HFDLVRE-----------WVPVILCKALNAYL---KISDTISILNLSIVDKQFHARFSAI 108 H D+ R+ P ++ A+N +L K + ++++ + V FHAR+ A Sbjct: 71 HVDVERKSKRKPGEVMPPHEPRVVQTAINHFLHAQKDAGDMAVVGVQCVSPDFHARYRAQ 130 Query: 109 RRSYLYRIITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y YR++T +++ +K +AW + + L+ +M A + LVG HDF++FR+ CQA+S Sbjct: 131 ERTYHYRVLTGNRQMSVFQKDQAWHVSEELNLTSMMEACKVLVGHHDFSSFRATGCQANS 190 Query: 168 PIRTIDHFDV----------------------------------------NSFGNLIEIR 187 PIRT+D V + G ++R Sbjct: 191 PIRTLDELHVCEMPAWPCFPSPEERQQSSQNAETKDLESTTSELKDPILTSKLGTSEKLR 250 Query: 188 VV-----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ARSFL+ Q+R VG+LK VG G T D+++ L A+ + +AP GLY Sbjct: 251 CFVITARARSFLYHQVRLMVGTLKAVGCGDLTVQDVQRILDARTITQAPAMAPACGLYLA 310 Query: 243 SVEY 246 +V+Y Sbjct: 311 NVKY 314 >gi|254854197|ref|ZP_05243545.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503] gi|300763651|ref|ZP_07073649.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017] gi|258607589|gb|EEW20197.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503] gi|300515928|gb|EFK42977.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017] Length = 248 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 134/251 (53%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL A IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQAMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ +AL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEY 246 P+GLY V+Y Sbjct: 237 PQGLYLWRVDY 247 >gi|91789465|ref|YP_550417.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666] gi|123059533|sp|Q126M3|TRUA_POLSJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91698690|gb|ABE45519.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666] Length = 264 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 126/244 (51%), Gaps = 6/244 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+GS Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRIALGISYSGSAYEGWQSQLSGNTVQDKLESALARFAAQPVRTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V + NA+L SD I++ V FH R SAI R Y Y ++ Sbjct: 61 VHFDTVLHRDMGSWVRGTNAFLP-SD-IAVQWAREVPDTFHCRGSAIARRYAYVVLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--- 178 ++E GR + + LD MR A HLVG HDF++FR+ CQA SP++TI+ +++ Sbjct: 119 RPSVEAGRVGWVYRPLDGAAMRQAITHLVGEHDFSSFRAAQCQAKSPVKTINRIEISERA 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + A +FLH IR+ +G L +G G L + A+ R P P Sbjct: 179 GTGSKYWHFEFEANAFLHHMIRNIMGCLVAIGQGSHEPGWLLDVMAARSRDAAAPTFSPN 238 Query: 238 GLYF 241 GLYF Sbjct: 239 GLYF 242 >gi|221307961|ref|ZP_03589808.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. 168] gi|221312282|ref|ZP_03594087.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317216|ref|ZP_03598510.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321479|ref|ZP_03602773.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. SMY] gi|255767037|ref|NP_388029.2| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. 168] gi|321313820|ref|YP_004206107.1| tRNA pseudouridine synthase A [Bacillus subtilis BSn5] gi|239938721|sp|P70973|TRUA_BACSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225184664|emb|CAB11924.2| pseudouridylate synthase I [Bacillus subtilis subsp. subtilis str. 168] gi|291482520|dbj|BAI83595.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. natto BEST195] gi|320020094|gb|ADV95080.1| tRNA pseudouridine synthase A [Bacillus subtilis BSn5] Length = 247 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + + + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAERWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ ++MR AA+HL+G HDFT+F + + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTEVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + +++ L+A+DR+ G AP GL Sbjct: 179 TADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLWNVYYD 246 >gi|312109293|ref|YP_003987609.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1] gi|311214394|gb|ADP72998.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1] Length = 248 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 126/241 (52%), Gaps = 3/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G+ +FG+Q Q ++QG +E+A+ + G+ + V +GRTD+GVHA QV HFD Sbjct: 9 LSYDGTHFFGYQIQPGKRTVQGELEQALEQIHKGKAIRVTASGRTDAGVHAYGQVIHFDT 68 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 P KALNA L D I I + FHARFSA + Y Y++ Q Sbjct: 69 FLSLSPEQWKKALNALL--PDDIVIKDAQEAAPSFHARFSATAKEYRYKVRIAQERDVFL 126 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + + P LD E M A + + G HDFT+F S +RTI D+ +L+E Sbjct: 127 RHYCYHYPYPLDMEAMGRALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMTVRDDLLEF 186 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R + FL+ +R VG++ VG GK + + AL A+DR+ G APP+GLY V Y Sbjct: 187 RFIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGKTAPPQGLYLWKVYY 246 Query: 247 S 247 Sbjct: 247 D 247 >gi|153938429|ref|YP_001392800.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|152934325|gb|ABS39823.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|295320780|gb|ADG01158.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613] Length = 246 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 133/241 (55%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA + +F Sbjct: 8 LEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAKGYICNFF 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P L K +N L I +L+ +FH+RF + ++Y Y ++ P+A+ Sbjct: 68 TNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSSQPIAI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N G+ I+ Sbjct: 126 GRNYIFQFKNKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEINKKGDFIK 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG+L +G K ++ ++++DR + G P GL V Sbjct: 186 FIITGDGFLYNMVRIMVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSGLCLKEVF 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|317048970|ref|YP_004116618.1| tRNA pseudouridine synthase A [Pantoea sp. At-9b] gi|316950587|gb|ADU70062.1| tRNA pseudouridine synthase A [Pantoea sp. At-9b] Length = 268 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ+ S+Q +EKA+ V V V AGRTD+GVH QV HF+ Sbjct: 14 IEYDGSRYYGWQRQQEVRSVQEKLEKALSKVANHDVSVFCAGRTDAGVHGTGQVVHFETT 73 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V + FHARFSA R Y Y I R P L Sbjct: 74 SQRADGAWTLGVNANL--PPDIAVRWVKAVPETFHARFSATARRYRYVIYNQRLRPAILG 131 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 G LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 132 SGVTHFY-HPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVMHLNVTRQGPYVIV 190 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL +G G + + L A+DR A EGLY +V+Y Sbjct: 191 DIKANAFVHHMVRNIVGSLMEIGCGNQPESWMATLLAAKDRTLAAATARAEGLYLVAVDY 250 >gi|308187626|ref|YP_003931757.1| pseudouridylate synthase I [Pantoea vagans C9-1] gi|308058136|gb|ADO10308.1| pseudouridylate synthase I [Pantoea vagans C9-1] Length = 267 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +E+A+ V V + AGRTD+GVH QV HF+ Sbjct: 13 IEYDGSRYYGWQRQNEVRSVQEKVERALSKVADHPVSIFCAGRTDAGVHGTGQVVHFETT 72 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V +FHARFSA R Y Y I R P L Sbjct: 73 SQRPDGAWTLGVNANLPAD--IAVRWVKAVPDEFHARFSATARRYRYLIYNQRLRPAVLA 130 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 +G LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 131 QGVTHFY-HPLDAEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVIHLNVTRQGPYVIV 189 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL +G G + + L A+DR A EGLY +V+Y Sbjct: 190 DIKANAFVHHMVRNIVGSLMEIGCGNKPESWMATLLAAKDRTLAAATARAEGLYLVAVDY 249 >gi|154684666|ref|YP_001419827.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens FZB42] gi|166228678|sp|A7Z0S0|TRUA_BACA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154350517|gb|ABS72596.1| TruA [Bacillus amyloliquefaciens FZB42] Length = 247 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 132/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ T V V+ +GRTDS VHA Sbjct: 1 MRVKCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGRVPVYSSGRTDSDVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPGEKWPFALNALL--PDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ + MR A++HLVG HDFT+F + +RTI D Sbjct: 119 KHPDVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFTSFCAADTAVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK++ D++ L+A+DR+ G AP GL Sbjct: 179 TVDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y SV Y Sbjct: 239 YLWSVCYD 246 >gi|259500923|ref|ZP_05743825.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335] gi|302190624|ref|ZP_07266878.1| tRNA pseudouridine synthase A [Lactobacillus iners AB-1] gi|309803645|ref|ZP_07697735.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d] gi|309804945|ref|ZP_07699003.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c] gi|309806696|ref|ZP_07700691.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b] gi|309808529|ref|ZP_07702428.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a] gi|312871160|ref|ZP_07731258.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a] gi|312872668|ref|ZP_07732733.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1] gi|315653995|ref|ZP_07906911.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195] gi|259167617|gb|EEW52112.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335] gi|308164243|gb|EFO66500.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d] gi|308165705|gb|EFO67930.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c] gi|308166876|gb|EFO69060.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b] gi|308168357|gb|EFO70476.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a] gi|311091710|gb|EFQ50089.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1] gi|311093174|gb|EFQ51520.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a] gi|315488691|gb|EFU78337.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195] Length = 260 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P + ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALM--PRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QNGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLYHVFYD 247 >gi|160941032|ref|ZP_02088370.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC BAA-613] gi|158435981|gb|EDP13748.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC BAA-613] Length = 247 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q +I+ + +A+ + E + V GA RTDSGVHA Sbjct: 1 MKRIRLVVAYDGTQYHGWQIQPGAVTIESVLNEALTQLMREPIQVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + P +C ALN ++ + I + V +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTESQMPPDKICMALNQ--RLPEDIRVQVSEEVPSDWHPRKCTCIKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 + +E+ + LD + M+ AA L G HDF +F S+ Q + +RT+ DV + Sbjct: 119 INMPMERLYSHFCYYKLDVDRMQAAANMLAGEHDFKSFCSVRTQVTDTVRTVYRIDVTRN 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IRV FL+ +R G+L VG G + D+ L+A+DR+ GP AP GL Sbjct: 179 ADDIITIRVTGNGFLYNMVRIIAGTLMAVGTGHIQAEDMPSILEAKDRRAAGPTAPARGL 238 Query: 240 YFDSVEYS 247 ++Y Sbjct: 239 TLIEMKYE 246 >gi|295093665|emb|CBK82756.1| pseudouridylate synthase I [Coprococcus sp. ART55/1] Length = 247 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +++ + K + + E + V GA RTDSGVHAL Sbjct: 3 MKRVKLIVAYDGTNYCGWQVQINGITVEEVLNKTLSELCHEDIKVIGASRTDSGVHALGN 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN ++ + I I V FH R+ ++Y Y+I+ R+ Sbjct: 63 VAVFDTESGIPGEKFSFALNQ--RLPEDIRIQESCQVADDFHPRYCDTIKTYEYKILNRR 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ + + LD + M+ AA LVG HDF +F S Q + +RTI ++ Sbjct: 121 FDMPTERLYSTFVYYPLDIDKMKRAAAVLVGEHDFKSFCSSRSQVENTVRTITDITIDKA 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L +G G W +E L+A+DR + GP A +GL Sbjct: 181 GDMIHIRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILEAKDRTKAGPKAEAKGLT 240 Query: 241 FDSVEY 246 ++Y Sbjct: 241 LVEIKY 246 >gi|304398239|ref|ZP_07380113.1| tRNA pseudouridine synthase A [Pantoea sp. aB] gi|304354105|gb|EFM18478.1| tRNA pseudouridine synthase A [Pantoea sp. aB] Length = 267 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 129/240 (53%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y+GWQRQ S+Q +E+A+ V V + AGRTD+GVH QV HF+ Sbjct: 13 IEYDGSRYYGWQRQNEVRSVQEKVERALSKVADHPVSIFCAGRTDAGVHGTGQVVHFETT 72 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + +NA L I++ + V +FHARFSA R Y Y I R P L Sbjct: 73 SQRPDGAWTLGVNANL--PPDIAVRWVKAVPDEFHARFSATARRYRYLIYNQRLRPAVLA 130 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 +G LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G + + Sbjct: 131 QGVTHFY-HPLDAEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVIHLNVTRQGPYVIV 189 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A +F+H +R+ VGSL +G G + + L A+DR A EGLY +V+Y Sbjct: 190 DIKANAFVHHMVRNIVGSLMEIGCGNKPESWMATLLAAKDRTLAAATARAEGLYLVAVDY 249 >gi|254496537|ref|ZP_05109407.1| tRNA pseudouridine synthase A [Legionella drancourtii LLAP12] gi|254354236|gb|EET12901.1| tRNA pseudouridine synthase A [Legionella drancourtii LLAP12] Length = 262 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q ++Q ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVLEYDGSHYHGWQAQTGLHTVQQALEHALSKVADCPISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +E N++L S + + + + F+AR+SA R Y Y I Sbjct: 61 VHFDTDKERSIRAWIHGANSFL--SKDVCVKWGKELSETFNARYSATARRYRYVIYNGAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + + LD M AAQ L+G +DFT+FRS+ CQ+++P+R I V Sbjct: 119 RPALLRSNVTWQYRQLDHRLMHQAAQLLLGENDFTSFRSVECQSNTPMRNIHKLQVTRTN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A +FLH +R+ G L VG GK + +++ L+A+DR+ AP GLY Sbjct: 179 DLVIIDITANAFLHHMVRNIAGVLIAVGSGKHPVSWVDEVLKARDRRLGAETAPAYGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VQVTY 243 >gi|163816009|ref|ZP_02207379.1| hypothetical protein COPEUT_02189 [Coprococcus eutactus ATCC 27759] gi|158448819|gb|EDP25814.1| hypothetical protein COPEUT_02189 [Coprococcus eutactus ATCC 27759] Length = 254 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +++ + K + + E + V GA RTDSGVHAL Sbjct: 10 MKRVKLVVAYDGTNYCGWQVQINGITVEEVLNKTLSELCHENIKVIGASRTDSGVHALGN 69 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN ++ + I I V FH R+ ++Y Y+I+ R+ Sbjct: 70 VAVFDTESGIPGEKFSFALNQ--RLPEDIRIQESCQVADDFHPRYCDTIKTYEYKILNRR 127 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ + + LD + M+ AA LVG HDF +F S Q + +RTI ++ Sbjct: 128 FDMPTERLYSTFVYYPLDIDKMKRAAAVLVGEHDFNSFCSTRSQVENTVRTITDITIDKV 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L +G G W +E L A+DR + GP A +GL Sbjct: 188 GDMIHIRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILAAKDRTKAGPKAEAKGLT 247 Query: 241 FDSVEY 246 ++Y Sbjct: 248 LVEIKY 253 >gi|161521167|ref|YP_001584594.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|189352656|ref|YP_001948283.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|42559801|sp|Q83WJ5|TRUA_BURM1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28971662|dbj|BAC65262.1| tRNA pseudouridine synthase [Burkholderia multivorans] gi|160345217|gb|ABX18302.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|189336678|dbj|BAG45747.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] Length = 270 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFLP--PTVAVQWAKSMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHLYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRNRAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|255025629|ref|ZP_05297615.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-003] Length = 248 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 133/251 (52%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ KAL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEY 246 P+GLY V+Y Sbjct: 237 PQGLYLWRVDY 247 >gi|239623391|ref|ZP_04666422.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522357|gb|EEQ62223.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 247 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 132/248 (53%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q +I+ + +A+ + GE V V GA RTDSGVHA Sbjct: 1 MKRVRLVVAYDGTHYHGWQIQPGKVTIESRLNEALTSLLGEPVQVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN ++ + I + + VD +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTSHRMPADRICMALNQ--RLPEDIRVQSSEEVDPDWHPRKCRCVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 + +++ + +LD E M+ AA LVG HDF +F S+ Q + +RTI +V Sbjct: 119 IEMPMQRFYSHFCYFNLDLEKMQKAAGLLVGEHDFKSFCSVRTQVTDTVRTIYSIEVKRD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IRV FL+ +R G+L VG G+ D+ L+A+DR+ GP AP GL Sbjct: 179 EEDMIGIRVTGNGFLYNMVRIIAGTLMAVGMGQIAPEDMGAILEARDRRAAGPTAPARGL 238 Query: 240 YFDSVEYS 247 +EY Sbjct: 239 TLIQMEYD 246 >gi|169335662|ref|ZP_02862855.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM 17244] gi|169258400|gb|EDS72366.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM 17244] Length = 244 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQ Q NG S++ ++ AI + E V ++G+GRTDSGVHAL Q A F Sbjct: 5 LITIEYDGKNYVGWQMQNNGISVEEKVKTAIEKLVKEEVKLYGSGRTDSGVHALGQAASF 64 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L +N++L + I ++ ++ FHAR+SA + Y+Y I R Sbjct: 65 YTNSNISADKLPYGINSFL--PEDIRVIKAEEKEEDFHARYSAKGKEYVYLIYNRSIMNP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + KGRA + LD + M+ A++ L+G HDF F S +R I D+ +LI Sbjct: 123 IYKGRASHVFYKLDLDKMKRASKSLIGIHDFAGFMGSGSDVKSTVREIYDIDITKDNDLI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I++ FL+ +R V SL +G G++ +E+ L+ + R AP GLY + V Sbjct: 183 KIKISGSGFLYNMVRIIVASLIDIGRGRFDENRIEEILETKQRSMANVTAPAVGLYLNKV 242 Query: 245 EY 246 Y Sbjct: 243 FY 244 >gi|307705317|ref|ZP_07642179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597] gi|307621104|gb|EFO00179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597] Length = 249 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 P + + A P LD E M++A + L G HDFT F + IRTI Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTNVEDKIRTITEASLR 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDLILEKKDRQLAGPTAAS 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|170756303|ref|YP_001783087.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] gi|169121515|gb|ACA45351.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] Length = 246 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 133/241 (55%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA + +F Sbjct: 8 LEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAKGYICNFF 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P L K +N L I +L+ +FH+RF + ++Y Y ++ P+A+ Sbjct: 68 TNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSSQPIAI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N G+ I+ Sbjct: 126 GRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEINKKGDFIK 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG+L +G K ++ ++++DR + G P GL V Sbjct: 186 FIITGDGFLYNMVRIMVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSGLCLKEVF 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|255284006|ref|ZP_05348561.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] gi|255265459|gb|EET58664.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] Length = 245 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q N +I+ + + + GE + V GA RTD+GVHAL Sbjct: 1 MKRVKLIVAYDGTNYSGWQIQPNAVTIESMLNLHLSELLGEPIRVIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + A+N ++ I I + V FH RF ++Y YRI+ R+ Sbjct: 61 VAVFDTSARMPAEKISYAMNT--RLPQDIRIQDSCEVAADFHPRFCKTIKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + LD ENMR A +LVG HDF + + + + +RTI D+ Sbjct: 119 FPDPTRRLYSLFYYYPLDVENMRRALAYLVGEHDFKSLCTHKEEVENTVRTIYEADIQKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L VG G + +++ L A++R+ G APP+GL Sbjct: 179 GDMISIRISGNGFLYNMVRIIVGTLLRVGSGYYPPEYMQELLAAKNRQAAGETAPPQGLT 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LLEIRY 244 >gi|241759308|ref|ZP_04757414.1| tRNA pseudouridine synthase A [Neisseria flavescens SK114] gi|241320444|gb|EER56741.1| tRNA pseudouridine synthase A [Neisseria flavescens SK114] Length = 270 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + + Y+GS ++GWQ+Q ++Q ++E+A+ + GE + AGRTD+GVHA Sbjct: 1 MQRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVAGRTDTGVHATA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +NA+L D +++L V FHARF A R Y Y + + Sbjct: 61 QVVHFDTSVSRPEQAWVRGVNAHLP--DGVAVLVAQKVAPHFHARFDAYGRHYRYLLESS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 119 PVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYRTSISG 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + +FLH +R+ +G+L VG G+ + + E A+ R + P +GL Sbjct: 179 TSRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKAPPTFMSDGL 238 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 239 YLTGVDY 245 >gi|283795894|ref|ZP_06345047.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|291076529|gb|EFE13893.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] Length = 275 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 141/262 (53%), Gaps = 23/262 (8%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++++Y+GS Y GWQ+Q N ++IQG +E + + GE V +HG+GRTD+GVHAL QVA+F Sbjct: 7 IVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLAGEPVEIHGSGRTDAGVHALGQVANF 66 Query: 65 DLVREWVPVILCKA--------------------LNAYLKISDTISILNLSIVDKQFHAR 104 L + ++ K LN YL + I++++ V ++FH+R Sbjct: 67 RLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYL--PEDIAVISAMEVPERFHSR 124 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 +A+ ++YLY+I T E+ + + + LD M+ AA+ L+G HDF F S Sbjct: 125 LNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLLAMKEAAKLLLGSHDFRAFSSAKRM 184 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 S +R + +++ G+ + + FL+ +R G+L +G + T + KAL++ Sbjct: 185 KKSTVRELRKIEIHRDGSRVLLEFTGNGFLYNMVRILTGTLIEIGLHRRTVDSVRKALES 244 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 QDR+ G AP EGL SV Y Sbjct: 245 QDRENAGFTAPAEGLLLKSVRY 266 >gi|217966203|ref|YP_002351881.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23] gi|254789639|sp|B8DB42|TRUA_LISMH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217335473|gb|ACK41267.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23] gi|307572187|emb|CAR85366.1| tRNA pseudouridine synthase A [Listeria monocytogenes L99] Length = 248 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 133/251 (52%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRDFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ KAL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEY 246 P+GLY V+Y Sbjct: 237 PQGLYLWRVDY 247 >gi|220915529|ref|YP_002490833.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] gi|219953383|gb|ACL63767.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] Length = 245 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA QV F Sbjct: 6 LVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQVVSFP 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 R +NA L +++ S+ F AR SA + Y Y I L Sbjct: 66 EERPLPVKAYVMGMNALL--PPDVAVRAASLAPDGFDARRSARGKRYRYVIENLPTRAPL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLI 184 + +AW L+ N+R AA HLVGRHDF F++ C +R + D V G I Sbjct: 124 TRLQAWQHFHPLELANVREAAAHLVGRHDFAAFQASDCACEHAVREVRRLDVVGEGGGRI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL+ + V Sbjct: 184 EVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLDLLARGDRTEAGPTAPPQGLFLEEV 243 Query: 245 EY 246 Y Sbjct: 244 FY 245 >gi|148381387|ref|YP_001255928.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 3502] gi|153931537|ref|YP_001385762.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|153934471|ref|YP_001389169.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] gi|148290871|emb|CAL85007.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC 3502] gi|152927581|gb|ABS33081.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|152930385|gb|ABS35884.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] Length = 246 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 133/241 (55%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA + +F Sbjct: 8 LEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHARGYICNFF 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P L K +N L I +L+ +FH+RF + ++Y Y ++ P+A+ Sbjct: 68 TNTKIPPENLQKVINNIL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSSKPIAI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N G+ I+ Sbjct: 126 GRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEINKKGDFIK 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG+L +G K ++ ++++DR + G P GL V Sbjct: 186 FIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSGLCLKEVF 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|322807772|emb|CBZ05347.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065] Length = 246 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 133/241 (55%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA + +F Sbjct: 8 LEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAKGYICNFF 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P L K +N L I +L+ +FH+RF + ++Y Y ++ P+A+ Sbjct: 68 TNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSSQPIAI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N G+ I+ Sbjct: 126 GRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEINKKGDFIK 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG+L +G K ++ ++++DR + G P GL V Sbjct: 186 FIITGDGFLYNMVRIIVGTLIEIGLNKRKPEYIKYVIKSKDRTKAGKCVPSSGLCLKEVF 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|325107879|ref|YP_004268947.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305] gi|324968147|gb|ADY58925.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305] Length = 278 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 133/260 (51%), Gaps = 21/260 (8%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+GSGY+GWQ Q + +IQ +E+AI +TG V GAGRTD+GVHA+ QVA F Sbjct: 8 LTLSYDGSGYYGWQVQPDRPTIQEHLERAIGNITGTPSRVAGAGRTDTGVHAIGQVACFR 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 AL + ++ D I I FHA +++ + Y Y ++ + P Sbjct: 68 TESNIPAERFRPALQS--QLPDDIVIWKSEEAADDFHAGYASRWKQYRYLVLNEEIPRPQ 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN------- 178 + A I LD + M AA LVG+HDF +F S ++ +RT+ H VN Sbjct: 126 MRRYATRIGTRLDLDAMNEAASALVGKHDFRSFESQFPNKATSVRTVLHCRVNEAETCPL 185 Query: 179 ------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + G + + + A FL+ +R+ +G+L +G G W ++ ++ L+A D Sbjct: 186 WQPGLGGQRFGQAVGRCVYLDIAADGFLYNMVRAIMGTLLKIGIGSWPASAGKEVLEAMD 245 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R+ GP APPEGLY VEY Sbjct: 246 RRVAGPTAPPEGLYLMHVEY 265 >gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM 16841] gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM 16841] Length = 247 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +I+ + + + + GE + V GA RTDSGVH++ Sbjct: 1 MKRVKLIVAYDGTNYCGWQVQPNGITIEQVLNENLSKLLGEEITVTGASRTDSGVHSMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN ++ + I + + V +H R+ R++Y YRI+ R Sbjct: 61 VAIFDTETRMPADKISFALNQ--RLPEDIVVQDSCEVPSDWHPRYQVSRKTYEYRILNRT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + LD + M+ AA +LVG HDF +F ++ Q + RTI +V Sbjct: 119 FRMPNRRLDTYFYHHKLDVDKMKQAASYLVGEHDFKSFCAVGAQVKTTTRTIYSCEVEKD 178 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN +I IRV FL+ +R G+L VG G+ ++ + L +DR GP AP GL Sbjct: 179 GNDIITIRVTGNGFLYNMVRIIAGTLIRVGGGEMAPDEIPQILGKKDRTAAGPTAPAHGL 238 Query: 240 YFDSVEY 246 +EY Sbjct: 239 TMMGIEY 245 >gi|331002224|ref|ZP_08325743.1| tRNA pseudouridine synthase A [Lachnospiraceae oral taxon 107 str. F0167] gi|330411318|gb|EGG90734.1| tRNA pseudouridine synthase A [Lachnospiraceae oral taxon 107 str. F0167] Length = 245 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ+Q NG +I+ + AI +TGE + V GA RTDSGVHA Sbjct: 1 MRRIRLIVSYDGTNYCGWQKQPNGITIEEVLNNAITKLTGEDIEVIGASRTDSGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD A+N ++ + I I V+ +H R + ++Y YRI+ R+ Sbjct: 61 IAVFDTNARIAADKFAFAINQ--RLPEDIRIQYSDEVESGWHPRKNDCIKTYTYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ A +LD E MR A+ + +G HDFT+F S QASSPIRTI ++ Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCSQKSQASSPIRTIFSLEILQD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ I + FL+ IR G+L VG G + + + + ++A++RK G P +GL Sbjct: 179 EDMVTIVIRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKNRKLAGQTMPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|294669057|ref|ZP_06734143.1| tRNA pseudouridine synthase A [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309049|gb|EFE50292.1| tRNA pseudouridine synthase A [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 326 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS +FGWQ+Q +G S+Q ++E A+ + GE V V AGRTD+GVHA QV Sbjct: 62 RWALTLSYDGSRFFGWQKQADGVVSVQAALESALSQIAGETVNVVAAGRTDTGVHATAQV 121 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + +N+ L +++ V FHARF A R Y Y + + Sbjct: 122 VHFDTAAERGEQSWIRGVNSLLP--QGVAVWQAKRVASHFHARFDAFGRRYRYVLQSSPV 179 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L R LD M+ AA LVG HDF++FR+ CQA SP++T+ ++ Sbjct: 180 RSPLLAARVGWTHTPLDFAAMQAAAALLVGEHDFSSFRASQCQAKSPVKTLYSVVLHGTP 239 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ VG+L VG+G+ + + L + R + P P+GLY Sbjct: 240 QLMALDLHGNAFLHHMVRNIVGALVYVGNGRLSVQGFAELLAEKSRLKAPPTFMPDGLYL 299 Query: 242 DSVEY 246 V+Y Sbjct: 300 TGVDY 304 >gi|291522074|emb|CBK80367.1| pseudouridylate synthase I [Coprococcus catus GD/7] Length = 247 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 4/243 (1%) Query: 6 MIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++IEY+GS Y GWQR + +G +IQG +E + +TGE V + GAGRTD+GVHA QVA+ Sbjct: 7 LLIEYDGSRYDGWQRLGKGHGVTIQGKLEDVLSKMTGEQVELIGAGRTDAGVHAYEQVAN 66 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + LN YL I++ + V ++FH+R++A + YLYRI P Sbjct: 67 FHTNSNMKCWEMKYYLNRYL--PGDIAVNRVDDVPERFHSRYNAKAKKYLYRIAIGDVPC 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 ++ W LD M+ AA LVG HDF F S S +R I D+ + Sbjct: 125 VFDRKYTWYCFDKLDVTAMKKAAALLVGEHDFKAFCSNKRTNKSTVREIYDIDIYADTRE 184 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 ++I V FL+ +R VG+L VG G+ ++ L++++R + G A +GL+ Sbjct: 185 LQITVYGNGFLYNMVRIIVGTLIEVGKGERRPEEMTAILESRERTKAGATAAAQGLFLQE 244 Query: 244 VEY 246 VEY Sbjct: 245 VEY 247 >gi|311745793|ref|ZP_07719578.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] gi|126575993|gb|EAZ80271.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] Length = 252 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 131/255 (51%), Gaps = 26/255 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y G+ Y GWQ Q N S+Q IE A+ + V G+GRTD+GVHA QV Sbjct: 6 RYFLELSYKGTKYHGWQIQNNAFSVQECIESALSTYFRSPITVMGSGRTDTGVHAKMQVC 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFDL + KA+N L I ISI+++ V HARF A+ RSY+YRII ++ P Sbjct: 66 HFDLADDIDYGKFLKAINGILPID--ISIMSIRQVTPNAHARFDAVSRSYVYRIIFQKNP 123 Query: 123 LALEKGRAW---LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 G AW IP D E M +AA+ L+ DF F +H + + HF D+ Sbjct: 124 FL--DGLAWHSYFIP---DLEKMNLAAETLLKHDDFECFSKVHTE-------VKHFRCDI 171 Query: 178 NSF------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 S G L+ + A FL +R+ VG+L VG GK D+EK + ++DR G Sbjct: 172 KSCSWEQKDGELL-FHITANRFLRGMVRAIVGTLMEVGLGKKAPEDMEKIILSKDRSNAG 230 Query: 232 PLAPPEGLYFDSVEY 246 AP GL+ + Y Sbjct: 231 KSAPARGLFLSRIIY 245 >gi|225388793|ref|ZP_03758517.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme DSM 15981] gi|225045068|gb|EEG55314.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme DSM 15981] Length = 250 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MI++Y+G+ Y GWQRQ N +IQG +E + + E + VHG+GRTD GVHA Q Sbjct: 1 MNYKMILQYDGTRYDGWQRQGNTDRTIQGKLEAVLGRLAEETLEVHGSGRTDGGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F L + P + LN YL + I +L L+ ++FH+R +A R++Y Y+I Sbjct: 61 VANFHLKQAREPEEIRAYLNRYL--PEDICVLELTAAPERFHSRLNACRKTYRYQIWMDG 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + + K LD M AA L+G HDF +F S +RTI + Sbjct: 119 KTDVFQRDYFYGLGKQLDIGQMERAAGTLLGTHDFKSFCGNKKMKKSTVRTITAIRLIRL 178 Query: 181 --GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + V FL +R G+L VG GK + LE L+ ++R G APPEG Sbjct: 179 CDGKALAVDVTGNGFLQQMVRILAGTLIEVGLGKREADSLEAVLELKERSAAGFTAPPEG 238 Query: 239 LYFDSVEYS 247 L +V+Y Sbjct: 239 LCLMNVQYE 247 >gi|323706484|ref|ZP_08118045.1| tRNA pseudouridine synthase A [Thermoanaerobacterium xylanolyticum LX-11] gi|323534204|gb|EGB23994.1| tRNA pseudouridine synthase A [Thermoanaerobacterium xylanolyticum LX-11] Length = 239 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 131/242 (54%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY+G+ Y GWQ QKN ++Q I KAI +T E V + G+ RTD+GVHAL QVA+F Sbjct: 1 MVIEYDGTNYHGWQIQKNAVTVQEVITKAIKKITSEDVNLIGSSRTDAGVHALNQVANF- 59 Query: 66 LVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +P+ + ALN+ L I I N D FH+R+SA + Y Y I R+ Sbjct: 60 ISNCNIPLSKMPNALNSVL--PKDIVIKNAYEADMDFHSRYSAKGKRYKYIIYNRKFNSP 117 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + +W I LD + M + +L G HDF+ F+S IRT+ + + Sbjct: 118 VYRNYSWHISDELDLDKMIESLTYLKGTHDFSAFKSSGSSVKDSIRTVRDISLRKNDFNV 177 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E + A FL+ +R VG++ VG GK +++ L+++DR G APP+GL+ + Sbjct: 178 EFEIEADGFLYNMVRIIVGTIVDVGIGKINPIHVKEILESKDRCMAGKTAPPQGLFLTKI 237 Query: 245 EY 246 Y Sbjct: 238 YY 239 >gi|291524335|emb|CBK89922.1| pseudouridylate synthase I [Eubacterium rectale DSM 17629] gi|291527615|emb|CBK93201.1| pseudouridylate synthase I [Eubacterium rectale M104/1] Length = 244 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + + + + E + V GA RTD+GVH+L V Sbjct: 1 MRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLKEDIKVTGASRTDAGVHSLGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD + ALN K+ + I +++ V FH RFS R++Y YRI+ + Sbjct: 61 CMFDTNTRMPAEKISYALNQ--KLPEDIVVVDSCEVSDDFHPRFSKSRKTYEYRILNARF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M AA++L+G HDF +F S + QA + +RTI V+ G Sbjct: 119 RNPTRRLDTYFYHYPLDTEKMSEAAKYLIGEHDFASFCSANSQAQTTVRTIYDCTVSKAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L +G + ++ + A DR GP AP GL Sbjct: 179 DIITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIAATDRAAAGPTAPAHGLTM 238 Query: 242 DSVEY 246 ++Y Sbjct: 239 IGLKY 243 >gi|255571004|ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis] gi|223534233|gb|EEF35948.1| pseudouridylate synthase, putative [Ricinus communis] Length = 372 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 149/315 (47%), Gaps = 71/315 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ + G Q+Q NG ++ G +E+A G+ V V + RTD+GVHAL V Sbjct: 55 RYLIAVEYIGTKFAGSQKQLNGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNVC 114 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L+ ++ I + ++ V FHARF A R Sbjct: 115 HVDIERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQER 174 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR ++ PL+ EK RAW + + LD M+ A + LVG HDF++FR+ CQA SPI Sbjct: 175 TYFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSPI 234 Query: 170 RTI------------------------------------------DHFDVN----SFGNL 183 RT+ H + N SFG Sbjct: 235 RTLAEISVSEVASTLYFPSITEREQNCENGENSCCKKFKTDLPMGSHSNTNVAESSFGET 294 Query: 184 ---IEIRVVARSFLHT---------QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 IR R F+ T Q+R VG LK VG G T++D+E+ L A+ Sbjct: 295 DLGFGIRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAAS 354 Query: 232 PLAPPEGLYFDSVEY 246 P+AP GLY V+Y Sbjct: 355 PMAPARGLYLGHVKY 369 >gi|312874027|ref|ZP_07734062.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d] gi|312874727|ref|ZP_07734746.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b] gi|325912360|ref|ZP_08174756.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D] gi|329920629|ref|ZP_08277316.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G] gi|311089472|gb|EFQ47897.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b] gi|311090367|gb|EFQ48776.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d] gi|325475831|gb|EGC79001.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D] gi|328935887|gb|EGG32347.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G] Length = 260 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P + ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALM--PRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A++R++ AP G Sbjct: 179 QHGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNTAPASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLYHVFYD 247 >gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM 12680] gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM 12680] Length = 244 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++EY G+ Y G+QRQ G +I+G +E AI +TGE V V AGRTD+GVHAL Q Sbjct: 1 MNRIKALVEYEGTRYSGFQRQPRGLTIEGELEAAICKLTGERVKVLAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD P ALN+ L SD I +L + FH R+ A ++Y Y I ++ Sbjct: 61 VIAFDTESPIPPERFAPALNSVLP-SD-IRVLKSEKAKEGFHPRYQARAKAYRYLIYRQE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ P+ LD M AA+++ G HDF F + + +RT+ +N Sbjct: 119 EGRTFYRNLAYYYPQPLDLPAMAKAARYMEGTHDFMAFCASGSGVRNYVRTVFEVSINEK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I V FL+ +R VG+L VG + ++E+ L ++DR+ GP P GLY Sbjct: 179 PPFLQIDVCGDGFLYNMVRIMVGTLLEVGRKRLAPEEVEQILLSRDRQRAGPTVPACGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LKRVFY 244 >gi|221196945|ref|ZP_03569992.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2M] gi|221203615|ref|ZP_03576634.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2] gi|221177549|gb|EEE09977.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2] gi|221183499|gb|EEE15899.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2M] Length = 270 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFLP--PTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHVYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGCDRNRAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|116749101|ref|YP_845788.1| tRNA pseudouridine synthase A [Syntrophobacter fumaroxidans MPOB] gi|116698165|gb|ABK17353.1| tRNA pseudouridine synthase A [Syntrophobacter fumaroxidans MPOB] Length = 261 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 5/246 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + +I+EY+GS Y GWQRQ +IQ +E + ++ V V +GRTD+GVHA QV + Sbjct: 12 FKLILEYDGSHYHGWQRQLGVLTIQEVLESRLEVMLQSPVGVRASGRTDAGVHACGQVVN 71 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + P + + +N+ L I +L+ + + FHARFSA ++Y Y I+ R Sbjct: 72 FHVHTRLRPEEILRGINSLL--PPDIVVLHAEVAAESFHARFSATGKTYEYHILNRPIRS 129 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 AL++ AW +P+ L+ + MR L+GRHDF F + + S RTI D++ N Sbjct: 130 ALQRRYAWHVPQPLEPQRMRECLGSLLGRHDFAAFMASGSKVKSTERTIRRADLDCLEN- 188 Query: 184 IEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 E+R+V A FL +R+ VG++ VG G + L ++DRK G AP GL+ Sbjct: 189 GEMRLVFEANGFLRHMVRNLVGTIVEVGRGVRAPEEFLDILSSRDRKRAGMTAPAHGLFL 248 Query: 242 DSVEYS 247 +V Y+ Sbjct: 249 TAVHYT 254 >gi|3915176|sp|Q45557|TRUA_BACSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|289265|gb|AAA73188.1| unknown [Bacillus sp. KSM-64] Length = 244 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y ++I+Y+G Y GWQR NG ++IQG IE + + G + + G+GRTD+GVHAL Sbjct: 1 MNNYKLMIQYDGGRYKGWQRLGNGENTIQGKIETVLSEMVGRKIEIIGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+ L + + + LN YL IS+ +++V +FH+R++A ++YLY+I Sbjct: 61 QVANVKLSENFTVKEVKEYLNRYL--PHDISVTEVTLVPDRFHSRYNAKDKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + I K L +NM A+Q VG HDFT F + + + RTI + Sbjct: 119 DYTHPFMRKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNAKSKKKTNTRTIHSITIQD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FL+ +R VG+L VG G+ + L+++DR + G A GL Sbjct: 179 NQGFIDIRVCGDGFLYNMVRKMVGTLIEVGLGEKEPEQVLTILESKDRSQAG-FADATGL 237 Query: 240 YFDSVEY 246 Y + + + Sbjct: 238 YLEGISF 244 >gi|330502915|ref|YP_004379784.1| tRNA pseudouridine synthase A [Pseudomonas mendocina NK-01] gi|328917201|gb|AEB58032.1| tRNA pseudouridine synthase A [Pseudomonas mendocina NK-01] Length = 287 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 131/254 (51%), Gaps = 20/254 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ +SIQG +E A+ V G V +H AGRTD+ VH+ Q Sbjct: 19 RVALGLEYKGARYRGFQRQGGKVASIQGCLEDALSKVAGGAPVTIHCAGRTDASVHSSGQ 78 Query: 61 VAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD E WV + A + + IS+ ++ FHARFSA+ R Y Y Sbjct: 79 VVHFDTTVERSLHAWV-------MGANMNLPSDISVTWAKVMPAHFHARFSAMARRYRYV 131 Query: 116 IIT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 I R A +A E W + LD MR AA LVG HDF+ FR+ CQA SPI+T+ Sbjct: 132 IYNDPIRPAHMAEEV--TW-NHRPLDVARMREAALALVGTHDFSAFRATRCQAKSPIKTV 188 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 H + G I + + A +FLH +R+ G L +G G+ + L+ DR G Sbjct: 189 HHLQLIEHGRFIVLDIRANAFLHHMVRNIAGVLMTIGAGERPPEWAREVLERGDRHSGGV 248 Query: 233 LAPPEGLYFDSVEY 246 A P GLY V+Y Sbjct: 249 TAHPYGLYLVQVDY 262 >gi|327536150|gb|AEA94984.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF] Length = 246 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + R P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNRPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|261364797|ref|ZP_05977680.1| tRNA pseudouridine synthase A [Neisseria mucosa ATCC 25996] gi|288566820|gb|EFC88380.1| tRNA pseudouridine synthase A [Neisseria mucosa ATCC 25996] Length = 270 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 136/250 (54%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ +I+ Y+GS ++GWQ+Q G ++Q ++E A+ + E + AGRTD+GVHA QV Sbjct: 13 RWALILSYDGSRFYGWQKQAGGLPTVQTTLEYALSQIASENIRTIVAGRTDTGVHATAQV 72 Query: 62 AHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD + WV + +NA+L + +S+L V FHARF A R Y Y + Sbjct: 73 IHFDTTVVRPEQAWV-----RGVNAHLP--EGVSVLFAQQVASHFHARFDAYGRRYRYLL 125 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + +GR LD + M+ AA L G HDF++FR+ CQA SPI+T+ Sbjct: 126 ESSPVRSPILQGRVGWTHLKLDPDKMQQAALLLEGEHDFSSFRAAECQAKSPIKTLYSAK 185 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +++ + +FLH +R+ +G+L VG G+ + + + + + R + P P Sbjct: 186 ISGTPQFLKLDLHGNAFLHHMVRNIMGALVYVGSGRLSVSGFQTLIGERSRLKAPPTFMP 245 Query: 237 EGLYFDSVEY 246 +GLY V+Y Sbjct: 246 DGLYLTGVDY 255 >gi|16804636|ref|NP_466121.1| tRNA pseudouridine synthase A [Listeria monocytogenes EGD-e] gi|224499270|ref|ZP_03667619.1| tRNA pseudouridine synthase A [Listeria monocytogenes Finland 1988] gi|224503609|ref|ZP_03671916.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-561] gi|254829047|ref|ZP_05233734.1| truA [Listeria monocytogenes FSL N3-165] gi|254830971|ref|ZP_05235626.1| tRNA pseudouridine synthase A [Listeria monocytogenes 10403S] gi|254899951|ref|ZP_05259875.1| tRNA pseudouridine synthase A [Listeria monocytogenes J0161] gi|254912843|ref|ZP_05262855.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818] gi|254937223|ref|ZP_05268920.1| truA [Listeria monocytogenes F6900] gi|255029029|ref|ZP_05300980.1| tRNA pseudouridine synthase A [Listeria monocytogenes LO28] gi|284800516|ref|YP_003412381.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578] gi|284993702|ref|YP_003415470.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923] gi|24212550|sp|Q8Y457|TRUA_LISMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16412086|emb|CAD00676.1| truA [Listeria monocytogenes EGD-e] gi|258601456|gb|EEW14781.1| truA [Listeria monocytogenes FSL N3-165] gi|258609828|gb|EEW22436.1| truA [Listeria monocytogenes F6900] gi|284056078|gb|ADB67019.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578] gi|284059169|gb|ADB70108.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923] gi|293590841|gb|EFF99175.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818] Length = 248 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 133/251 (52%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ +AL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEY 246 P+GLY V+Y Sbjct: 237 PQGLYLWRVDY 247 >gi|260588018|ref|ZP_05853931.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|331082412|ref|ZP_08331538.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] gi|260541545|gb|EEX22114.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|330400898|gb|EGG80499.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] Length = 244 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y + I+Y+GS Y GWQRQK+ ++IQG IE + + G V + GAGRTD+GVHA Q Sbjct: 1 MNYRLDIQYDGSRYGGWQRQKDTDNTIQGKIEDVLTKMLGTEVQIQGAGRTDAGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F E +C+ LN YL + I I +S +++FH+R +A + Y YRI++ Sbjct: 61 VANFHADCEKSCEEICQYLNEYL--PEDIEISKVSEAEERFHSRLNAKEKVYQYRIVSGI 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + ++LD M+ AA++L G HDF +F S S +RTI ++ Sbjct: 119 HKNVFERKYQCPLHETLDVNAMQEAAKYLEGTHDFKSFCSNKKMKKSSVRTIYSIEIVDL 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I FL+ +R G+L VG G+ +++ L+ DRKE G AP GL Sbjct: 179 TQEIVITYTGNGFLYNMVRILTGTLIEVGRGRRKPEEMKGILEGCDRKEAGFTAPARGLT 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLEVRY 244 >gi|225075428|ref|ZP_03718627.1| hypothetical protein NEIFLAOT_00433 [Neisseria flavescens NRL30031/H210] gi|224953246|gb|EEG34455.1| hypothetical protein NEIFLAOT_00433 [Neisseria flavescens NRL30031/H210] Length = 281 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + + Y+GS ++GWQ+Q ++Q ++E+A+ + GE + AGRTD+GVHA Sbjct: 12 MQRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVAGRTDTGVHATA 71 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +NA+L D +++L V FHARF A R Y Y + + Sbjct: 72 QVVHFDTSVSRPEQAWVRGVNAHLP--DGVAVLVAQKVAPHFHARFDAYGRHYRYLLESS 129 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GR LD MR AA L G HDF++FR+ CQA SP++T+ ++ Sbjct: 130 PVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPVKTLYSTKISG 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + +FLH +R+ +G+L VG G+ + + E A+ R + P +GL Sbjct: 190 TSRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKAPPTFMSDGL 249 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 250 YLTGVDY 256 >gi|257870548|ref|ZP_05650201.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] gi|257804712|gb|EEV33534.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] Length = 247 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ V +HG+GRTD+GVHAL Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTRMNNGQAVQIHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + P+ + + + I++ + IVD+ FHAR+ ++Y +R+ Sbjct: 61 QVIHFDF--DERPLEKMR-FGLDTQTPEDIAVKQVEIVDEHFHARYLVREKTYQFRVDIG 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P LD ++ A L+G HDFT+F + +RTI +V Sbjct: 118 KPRSPFRRYYASYYPYPLDLMKIQQALPDLLGTHDFTSFCATGSSVEDKVRTIHQASMEV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ + + + +DR GP A PE Sbjct: 178 NEAGDELLFTFRGDGFLYKMIRIMVGTLLKIGNGRLPADSIPAIIAQKDRNAAGPTAHPE 237 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 238 GLYLVRVAYE 247 >gi|257466765|ref|ZP_05631076.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|315917914|ref|ZP_07914154.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|313691789|gb|EFS28624.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] Length = 251 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 13/247 (5%) Query: 8 IEYNGSGYFGWQR---QKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHALRQV 61 IEY G+ Y GWQR ++ +IQG IE+ + F + E V V +GRTD+GVHA Q+ Sbjct: 10 IEYEGTRYLGWQRLGEKQREKTIQGKIEQVLARLFALNPEEVSVIASGRTDAGVHAKEQI 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+ L P + + N YL + I I + V++ FH+RF A + Y Y I + Q Sbjct: 70 ANVHLPSGKSPQEIEEYCNQYL--PEDIRIFHAHFVEELFHSRFHAKTKEYHYEI-SLQK 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--S 179 P + W P LD E M+ ++Q+ +G HDF F S+ S IR ID ++ Sbjct: 127 PSVFHRNVTWYCPIQLDIEKMKESSQYFLGEHDFLAFSSLKKTKKSTIRRIDRIEIQETE 186 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG L R V FL IR VG+L VG+GK T D+ Q++ R++ G LAP +GL Sbjct: 187 FGLL--FRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKARQKAGFLAPAKGL 244 Query: 240 YFDSVEY 246 V Y Sbjct: 245 TLYKVYY 251 >gi|121534665|ref|ZP_01666486.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1] gi|121306685|gb|EAX47606.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1] Length = 250 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYC-MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y G+QRQ N ++Q +E+ + + G + V GA RTD+GVHA QV Sbjct: 8 RYLKLTVAYDGTAYHGFQRQANAITVQQVLEERLATIFGHPLKVTGAARTDAGVHAYGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + +A + L I ++ V FHARFSA + YLYRI Sbjct: 68 VGFATSGTIPAANIVRAAKSVLP--PDIVVVKAEEVSADFHARFSARSKIYLYRIYNAAV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + + LD M A Q +VG HDF+ FR+ SP+RTI G Sbjct: 126 ADPFRRNYAWHVTQPLDEAAMDTAVQTVVGTHDFSAFRAAGGPPVSPVRTIYEAGCTREG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++E R FL+ +R+ VG+L VG G+ T + L +DR G APP+GLY Sbjct: 186 DMLEFRFWGNGFLYHMVRNLVGTLVDVGLGRLTRDGFTRILAGRDRTRAGITAPPQGLYL 245 Query: 242 DSVEY 246 + Y Sbjct: 246 KEIFY 250 >gi|86156809|ref|YP_463594.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] gi|85773320|gb|ABC80157.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] Length = 264 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 124/242 (51%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA QVA F Sbjct: 25 LVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQVASFR 84 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 R +NA L +++ S+ F AR SA + Y Y I L Sbjct: 85 EDRPLPVKAYVMGMNAVL--PPDVAVRAASLEPDGFDARRSARGKRYRYVIENLPTRAPL 142 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGNLI 184 + +AW L+ N+R AA HLVGRHDF F++ C +R + +V G I Sbjct: 143 TRLQAWQHFHPLELANVREAAAHLVGRHDFAAFQAADCACEHAVREVRRLEVLGEAGGRI 202 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL+ + V Sbjct: 203 EVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLALLARGDRTEAGPTAPPQGLFLEEV 262 Query: 245 EY 246 Y Sbjct: 263 FY 264 >gi|311029085|ref|ZP_07707175.1| Pseudouridylate synthase I [Bacillus sp. m3-13] Length = 248 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R I+ Y+G+G+ G+Q QK ++Q +++A+ + G V V +GRTD+GVHA+ Sbjct: 1 MNRLKCILTYDGAGFEGYQIQKEKRTVQLEVQRALSRIHKGTEVKVSASGRTDAGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +PV + ALNA+L I + + V FHARF +++ Y Y++ Sbjct: 61 QVLHFDSPLS-IPVAAWQNALNAHL--PKDIWVKKVESVSGDFHARFDVVKKEYRYKVSL 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ + + P LD E ++ A HL+G HDFT+F S + +RTI +V Sbjct: 118 AKDFNVFDRDQVYHYPYPLDLEAVKEACGHLIGEHDFTSFCSAKTEVEDKVRTIYSLEVV 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G +E R++ FL+ +R VG+L +G GK D+ L+A+DR G AP G Sbjct: 178 RNGEELEFRIIGNGFLYNMVRIIVGTLLEIGQGKKLPRDIFSILEARDRGAAGKTAPAHG 237 Query: 239 LYFDSVEYS 247 LY +V Y Sbjct: 238 LYLWNVVYD 246 >gi|256822702|ref|YP_003146665.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069] gi|256796241|gb|ACV26897.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069] Length = 264 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 122/247 (49%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+G Y GWQRQ + SS+Q ++EK + + E + V AGRTD+GVHA Q Sbjct: 1 MTKVALCIEYDGHRYHGWQRQSHASSVQQTLEKVLSTIADEPIEVSCAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-TR 119 + HF+L E + + A ++ D I++ V FHARFSA R Y Y I T Sbjct: 61 IIHFELSNE--RPLKAWTMGANTQLPDDIAVRWAHSVSDDFHARFSAKARRYRYIIANTP 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P G W LD + M A + G DF F++ CQ+ + R I H V Sbjct: 119 TRPAISRSGLTWCR-APLDIDVMNQACAYFPGEQDFAAFQAASCQSKTSFRNIHHLFVER 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I + A +FLH +R+ GSL +G ++ L +DR + A P GL Sbjct: 178 LGEYVVIDIKANAFLHHMVRNIAGSLIEIGRYNQKPEWAKQLLDGKDRTQAASTASPNGL 237 Query: 240 YFDSVEY 246 Y VEY Sbjct: 238 YLVDVEY 244 >gi|257865435|ref|ZP_05645088.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257871770|ref|ZP_05651423.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257875038|ref|ZP_05654691.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|325569125|ref|ZP_08145372.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] gi|257799369|gb|EEV28421.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257805934|gb|EEV34756.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257809204|gb|EEV38024.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|325157583|gb|EGC69741.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] Length = 245 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQ +E I L+TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYLGWQRLGDSEKTIQEKVEGVIKLLTGEEIEIVGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + + N YL I + + V ++FHAR+ A + Y Y + P Sbjct: 66 KTTHQMSLPEMQQFFNRYL--PQDIVVNKIEEVPERFHARYHAKGKQYSYYVWNNAIPSV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + ++ P+ LD E M+ AA+ L+G HDF F ++ S +RTID + G+L+ Sbjct: 124 FARNTSFHCPQPLDLEKMQQAAEKLIGTHDFIGFSALKKSKKSTVRTIDEITITPEGDLL 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FLH +R G+L +GDG +++ L + R+ G P GL+ D V Sbjct: 184 RFTFKGNGFLHKMVRILTGTLIAIGDGTLPPEVIDQVLADKVRQAAGETVPSHGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|312880338|ref|ZP_07740138.1| tRNA pseudouridine synthase A [Aminomonas paucivorans DSM 12260] gi|310783629|gb|EFQ24027.1| tRNA pseudouridine synthase A [Aminomonas paucivorans DSM 12260] Length = 260 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 125/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y G+ + G+Q Q N S+QG +E A+ ++G V HGAGRTD+GVHA Q Sbjct: 1 MPRYAAEVAYVGASFAGFQAQPNRPSVQGVLEAALEALSGSPVRCHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL R W P L A+ A+L S + IL ++ V FHARF A+ R Y + + + Sbjct: 61 VVHFDLPRPWDPFRLRGAMAAHLPPS--VEILQVAQVPDSFHARFDALWREYRFFLWNQA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 A + + W + LD ++ L GRHDF F RS+ S RT+ H Sbjct: 119 ACVPHLRPFVWWVKSPLDWTLVQHLLPSLRGRHDFGAFCRSVDRPEDS-WRTLLHVSCRR 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I R FL +R VG+L+ V G L+ R E G APP+GL Sbjct: 178 RGPFIRFRFRGDGFLTNMVRILVGTLEGVARGGMEPEAFLNLLEGGCRSEAGRTAPPQGL 237 Query: 240 YFDSVEYS 247 +F V Y+ Sbjct: 238 FFWRVGYA 245 >gi|310829551|ref|YP_003961908.1| hypothetical protein ELI_4001 [Eubacterium limosum KIST612] gi|308741285|gb|ADO38945.1| hypothetical protein ELI_4001 [Eubacterium limosum KIST612] Length = 244 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 MII Y G+ Y GWQRQ N +++ ++ AI VTGE V ++G+GRTD+GVHAL Q AHF Sbjct: 6 MIIAYKGTRYAGWQRQPNAPTVEEALTGAIKAVTGETVTLYGSGRTDAGVHALGQSAHFH 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P ALN ++ I +L+ + FH+R+SA + Y Y++ Sbjct: 66 TESRVPPERFAAALNT--RLPGDIRVLSSCEAPEGFHSRYSAKGKVYTYQLYLNPVLSPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 +W + +D M+ A+ +G HDF F + +RTI G L+ Sbjct: 124 YAEYSWHVNYPVDVSRMKAASAAFLGEHDFCGFMAAGSSVRGTVRTIRAITFEQEGALLR 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I FL+ +R G+L +G G+ + L + + DRK+ G APP+GL+ V Sbjct: 184 ITYTGNGFLYNMVRIMTGTLAEIGMGRIKAEALPGIIASCDRKQAGMTAPPQGLFLREVL 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|15896350|ref|NP_349699.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum ATCC 824] gi|30913407|sp|Q97EL1|TRUA_CLOAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15026164|gb|AAK81039.1|AE007806_12 Pseudouridylate synthase, TRUA [Clostridium acetobutylicum ATCC 824] gi|325510506|gb|ADZ22142.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum EA 2018] Length = 244 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 129/241 (53%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + +EY+G+ Y GWQ+QKN ++Q +EK I +TGE + V G RTDSGVHA +F Sbjct: 6 LTLEYDGTNYCGWQKQKNVVTVQEEVEKIIGEITGEKIDVIGCSRTDSGVHAKAYTCNFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P LN+ L D I LN V FH+RF ++Y Y I+ R A+ Sbjct: 66 TNTVIPPEKFYLVLNSVL--PDDIVALNSEEVPMDFHSRFDNKGKTYSYTILNRLQRAAI 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 ++ + L+C+ MR A ++++G HDFT+F+S + S IRTI + N + Sbjct: 124 DRNYVYQYGHKLNCDLMREATKYILGTHDFTSFKSTGSKVKSNIRTIYEARIVEDENKVI 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 V FL+ +R VG+L VG+ K T +++ ++++DR + G + P +GL + V Sbjct: 184 FYVTGDGFLYNMVRIIVGTLLEVGEEKITPLNVKTIVESKDRTKAGRVVPAKGLCLEKVM 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|326803064|ref|YP_004320882.1| tRNA pseudouridine synthase A [Aerococcus urinae ACS-120-V-Col10a] gi|326650503|gb|AEA00686.1| tRNA pseudouridine synthase A [Aerococcus urinae ACS-120-V-Col10a] Length = 264 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 132/249 (53%), Gaps = 9/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY I Y+G+ Y G+Q Q NG SIQ ++EKA+ L+T G+ + V+G+GRTDSGVHAL QV Sbjct: 4 RYKATIAYDGTPYVGFQVQPNGPSIQAALEKALKLMTKGQEIPVYGSGRTDSGVHALGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E L +ALN+ L D I + + V+K FHAR+ A R++YLY++ A Sbjct: 64 VHFDYPSEIETEGLLRALNSIL--DDAICVKTVEPVEKHFHARYHAQRKAYLYKV--SLA 119 Query: 122 PLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P R +++ P D ++ A L+G H+F +F S + R I + + Sbjct: 120 PFVSPFERHYVLHHPYRTDVSRIQAALPALIGAHNFKSFCSTKTDKTVFDREIYRAECQA 179 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + FL+ +R VG+ +GDG +L L+ QDR GP A Sbjct: 180 SWDGQTLTFYFEGNGFLYNMVRIIVGTCLQIGDGLRPVENLSDLLRIQDRNAAGPTAKAH 239 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 240 GLYLHHVDY 248 >gi|168181898|ref|ZP_02616562.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|237796908|ref|YP_002864460.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] gi|182674803|gb|EDT86764.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|229262719|gb|ACQ53752.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] Length = 246 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V G RTDSGVHA V +F Sbjct: 8 LEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGVSRTDSGVHAKGYVCNFF 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P L K +N L I +L+ +FH+RF + ++Y Y ++ P+A+ Sbjct: 68 TNTKIPPENLQKVINNNLPAD--IVVLSSEEASNEFHSRFCSKGKTYEYTVLNSSQPIAI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N G+ I+ Sbjct: 126 GRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEINKKGDFIK 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R VG+L +G K ++ ++++DR + G P GL V Sbjct: 186 FIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSGLCLKEVF 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|119471543|ref|ZP_01613957.1| tRNA pseudouridine synthase A [Alteromonadales bacterium TW-7] gi|119445486|gb|EAW26772.1| tRNA pseudouridine synthase A [Alteromonadales bacterium TW-7] Length = 264 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +EKA+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVEKALSSICNHPVEIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +N L I+I V + FHARFSA R Y Y I Sbjct: 61 VHFETNASREMVAFTMGMNTLL--PKDIAIRFAQPVVEDFHARFSATARRYRYVIYNYPY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M+ A QHL+G HDFT+FR++HCQA++ RTI H V G Sbjct: 119 RGAVMNEGVTHFHHKLDEKVMQEACQHLIGEHDFTSFRALHCQANTAKRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 DYVVIDIKANAFLHHMVRNITGCLMDIGLHKHQPVWLKELLDLKERAKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|320107224|ref|YP_004182814.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing protein [Terriglobus saanensis SP1PR4] gi|319925745|gb|ADV82820.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Terriglobus saanensis SP1PR4] Length = 287 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/257 (36%), Positives = 134/257 (52%), Gaps = 20/257 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ + GWQ Q +IQGS+ AI VT E V+ G+GRTD+GVHAL QV L Sbjct: 21 LAYDGTDFAGWQVQPGLPTIQGSLASAIRSVTSEEVLPQGSGRTDAGVHALGQVVSLKLA 80 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-------TRQ 120 P L +ALN L S I +L IV +FHAR + ++Y Y + + Sbjct: 81 VPIPPDNLKRALNRILPTS--IRVLEAGIVAPEFHARRGVLSKTYRYTLFLCRPTKDVEE 138 Query: 121 APLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--------IHCQASSP--I 169 + E+ R W P LD M AA+ VG HDFT+F + + ++++P I Sbjct: 139 IVCSPERARWVWQYPAPLDVAAMMQAAERFVGTHDFTSFAANDPERKTRLEAESNAPDNI 198 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 RT+ G+ + +V FLH +R+ VG+ VG G+ +T++EK L A++R Sbjct: 199 RTLYSSAWTLCGDELSYQVRGSGFLHHMVRNLVGTCVDVGAGRILATEMEKILVAKNRGA 258 Query: 230 CGPLAPPEGLYFDSVEY 246 GP APP+GL VEY Sbjct: 259 AGPTAPPQGLSLLEVEY 275 >gi|77360999|ref|YP_340574.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis TAC125] gi|123587603|sp|Q3IF40|TRUA_PSEHT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76875910|emb|CAI87131.1| tRNA pseudouridylate synthase I [Pseudoalteromonas haloplanktis TAC125] Length = 264 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +E A+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVETALSRICNHPVAIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +N L I+I V FHARFSA R Y Y I Sbjct: 61 VHFDTDAPRDMVAFTLGMNTLL--PKDIAIRFAQPVADDFHARFSATARRYRYVIYNNPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD M+ A Q+L+G++DFT+FR+IHCQA++ IRTI H V G Sbjct: 119 RGAVLNEGVTHFHHTLDETKMQEACQYLIGKYDFTSFRAIHCQANTAIRTIQHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 SYVIIDIKANAFLHHMVRNITGCLMDIGLHKQQPVWLKELLDLKERAKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|121605935|ref|YP_983264.1| tRNA pseudouridine synthase A [Polaromonas naphthalenivorans CJ2] gi|166228746|sp|A1VRR5|TRUA_POLNA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120594904|gb|ABM38343.1| tRNA pseudouridine synthase A [Polaromonas naphthalenivorans CJ2] Length = 264 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 135/249 (54%), Gaps = 16/249 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+GS Y GWQ Q +G ++Q +E A+ + + V AGRTD+GVHAL QV Sbjct: 1 MRIALGISYSGSAYEGWQSQLSGKTVQDKLELALSRFAVQPIRVMCAGRTDAGVHALMQV 60 Query: 62 AHFD--LVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD L RE WV + NA+L SD I++ V +FH+R SAI R Y Y + Sbjct: 61 VHFDTPLQRETSSWV-----RGTNAFLP-SD-IAVQWAQPVPDEFHSRASAIARRYAYVV 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + ++E GR + + LD + MR AA HL+G HDF++FR+ CQA SP++T+ + Sbjct: 114 LESPVRPSVEAGRVGWVYRPLDGDAMRQAALHLMGEHDFSSFRAAQCQAKSPVKTMSRIE 173 Query: 177 VNSFGN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++ A +FLH IR+ +G L +G G L + + A+ R P Sbjct: 174 ISQRAGPGSRYWRFEFEANAFLHHMIRNIMGCLLAIGQGNHPPEWLAEVVAARRRDAAAP 233 Query: 233 LAPPEGLYF 241 P+GLYF Sbjct: 234 TFSPDGLYF 242 >gi|323703112|ref|ZP_08114766.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] gi|323531889|gb|EGB21774.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] Length = 245 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 129/242 (53%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I+Y+GS Y GWQR + +IQG IE + +TGE + + G+GRTD+GVHAL QVA+F Sbjct: 6 LTIQYDGSRYRGWQRLGDTDVTIQGKIEAVLSRMTGEEIEIFGSGRTDTGVHALAQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L YL + I + + V +FHAR++ + YLY+I + Sbjct: 66 KTNSNMSTGEIMDYLYHYL--PEDIVVTRVEEVSDRFHARYNVKSKKYLYKIWNHKYHDP 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + +P+ L + M+ AA L+G HDF +FR+ + S ++TI D+ LI Sbjct: 124 FRRKFVHHVPEPLQIKAMQKAAAFLIGEHDFASFRASKSKKKSSVKTIYAIDIVKKDPLI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I V FLH +R VG+L VG G +++ L +DR GP AP +GLY V Sbjct: 184 KITVHGNGFLHNMVRIIVGTLVEVGLGHMRPEQVKEILSKKDRSAAGPTAPAKGLYLLEV 243 Query: 245 EY 246 EY Sbjct: 244 EY 245 >gi|46908770|ref|YP_015159.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b str. F2365] gi|47093538|ref|ZP_00231299.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b H7858] gi|226225144|ref|YP_002759251.1| pseudouridylate synthase I [Listeria monocytogenes Clip81459] gi|254825041|ref|ZP_05230042.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194] gi|254992719|ref|ZP_05274909.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-064] gi|255520577|ref|ZP_05387814.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-175] gi|51316671|sp|Q71WI0|TRUA_LISMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259550404|sp|C1KZ13|TRUA_LISMC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46882043|gb|AAT05336.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b str. F2365] gi|47018098|gb|EAL08870.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b H7858] gi|225877606|emb|CAS06320.1| Putative pseudouridylate synthase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594283|gb|EFG02044.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194] gi|328468084|gb|EGF39090.1| tRNA pseudouridine synthase A [Listeria monocytogenes 1816] Length = 248 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 133/251 (52%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ +AL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEY 246 P+GLY V+Y Sbjct: 237 PQGLYLWRVDY 247 >gi|254517504|ref|ZP_05129560.1| tRNA-pseudouridine synthase I [Clostridium sp. 7_2_43FAA] gi|226911253|gb|EEH96454.1| tRNA-pseudouridine synthase I [Clostridium sp. 7_2_43FAA] Length = 244 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 138/241 (57%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + +EY+G+ Y GWQ+QK G++IQ ++E+AI L+T E V G+ RTD+GVHA VA+F Sbjct: 6 LTLEYDGTNYLGWQKQKIGATIQETLEEAIRLLTNEESEVIGSSRTDAGVHARGFVANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +A+N ++ + I IL V++ FH+R+SA ++Y Y I+ R A+ Sbjct: 66 TNSTIPSEKFREAIN--YRLPNDIVILKSEEVEEDFHSRYSAKGKTYSYSILNRDVNSAI 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 K + + + LD E+M+ A ++ +G DF F+S + +RTI ++ ++I+ Sbjct: 124 GKDYVYHVKRKLDVEDMKEACKYFIGTKDFMAFKSSGSSVKTTVRTISDLYIDIKDDIIK 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V FL+ +R VG+L +VG K S +++ ++++DRK+ G P GL + V Sbjct: 184 IYVTGDGFLYNMVRIIVGTLIMVGSNKIDSREVKNIIESKDRKKAGICVPAAGLVLEKVY 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|146296772|ref|YP_001180543.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166228689|sp|A4XKB7|TRUA_CALS8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145410348|gb|ABP67352.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 244 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ YFGWQ+Q N ++QG IE AI +TGE V + G+GRTD GVHAL Q A+F Sbjct: 6 LTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITGEDVNLVGSGRTDRGVHALGQKANFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALN+ L + ISI + + V F AR+SA +++Y Y I + A+ Sbjct: 66 TESKIPTEKFPLALNSVL--PNDISIKDAAEVSLDFSARYSAKQKTYKYLIYNHKFRPAI 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + P LD +M+ + ++ +G +DF++F S + +S +R I + + I Sbjct: 124 LCNYVYHFPYELDLVSMQKSCEYFIGEYDFSSFCSSGSETNSKVRRIFDCYLTFENDCIA 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A FL+ R G++ VG G++ TD+ ++++DR + G PP GLY V Sbjct: 184 IYITANGFLYNMARIIAGTILDVGVGRFKPTDIPLIIESKDRTKAGKTLPPWGLYLVDVV 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|253701944|ref|YP_003023133.1| tRNA pseudouridine synthase A [Geobacter sp. M21] gi|259550393|sp|C6E4S9|TRUA_GEOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|251776794|gb|ACT19375.1| tRNA pseudouridine synthase A [Geobacter sp. M21] Length = 247 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 124/242 (51%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ Y GWQ Q NG ++Q ++E+A+ + G +HG+GRTD+GVHA VA F Sbjct: 6 LIIEYDGTAYCGWQVQPNGRTVQEALEEALASMLGGKTALHGSGRTDAGVHARGMVACFQ 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + LN L I++ V +FH RF A+ + Y Y ++ L Sbjct: 66 TDKGMPLRAFREGLNCLLPAD--IAVREACEVPLEFHPRFDALAKHYRYTMLLDDLRSPL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + AW + LD + MR A VG HDF FR+ +C A + +R I D+ G + Sbjct: 124 SRLTAWRLKGKLDVDAMRSACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQEGPFLH 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLAPPEGLYFDSV 244 + V FL +R G+L VG GK + D+ + L+ DR++ G PP+GL V Sbjct: 184 LDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLKGSDRQQNSGMTVPPQGLCLMQV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|257417873|ref|ZP_05594867.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|257159701|gb|EEU89661.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] Length = 246 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE++ + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGELIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|257888836|ref|ZP_05668489.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257824892|gb|EEV51822.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] Length = 246 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + +N YL I I + + ++FHAR++A+ + Y Y + P A Sbjct: 66 KTNTEIELSEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNNVIPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + G ++ Sbjct: 124 FERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIERKGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 V FL+ +R +G+L +G G +++ +++ R+ G P +GL+ D V Sbjct: 184 HFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKARQHAGETVPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|269139760|ref|YP_003296461.1| tRNA pseudouridine synthase A [Edwardsiella tarda EIB202] gi|267985421|gb|ACY85250.1| tRNA pseudouridine synthase A [Edwardsiella tarda EIB202] gi|304559626|gb|ADM42290.1| tRNA pseudouridine synthase A [Edwardsiella tarda FL6-60] Length = 275 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 127/242 (52%), Gaps = 8/242 (3%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV HF Sbjct: 21 IEYDGSRYAGWQRQREVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVHFTTH 80 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA+L +++ + V FHARFSA R Y Y I R P L+ Sbjct: 81 ALRQEGAWTMGVNAHLP--KDVAVRWVKSVSPDFHARFSATARRYRYVIYNHRYRPAVLQ 138 Query: 127 KG--RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 G +L LD E M A Q L+G +DF+ FR+ CQ+ +P R + H VN +G + Sbjct: 139 SGVTHCYL---PLDAERMARAGQALLGENDFSAFRAAQCQSRTPWRNVSHLRVNRYGPYV 195 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + + A +F+H +R+ VGSL VG G + + + L +DR A GLY +V Sbjct: 196 VVDIKANAFVHHMVRNIVGSLLEVGCGNQPESWIAELLAGRDRTLAAATAKAAGLYLVAV 255 Query: 245 EY 246 +Y Sbjct: 256 DY 257 >gi|281412654|ref|YP_003346733.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10] gi|281373757|gb|ADA67319.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10] Length = 245 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 130/246 (52%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + K A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR AA++L G HDFT+F++ P+RTI + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAAKYLEGTHDFTSFKT-GSDERDPVRTIYRIRILR 177 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP G Sbjct: 178 LKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|332532285|ref|ZP_08408166.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis ANT/505] gi|332038383|gb|EGI74828.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis ANT/505] Length = 264 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG Y GWQRQ + +S+Q +EKA+ + V V AGRTD+GVH Q+ Sbjct: 1 MRVALGVEYNGVRYSGWQRQSHVNSVQQEVEKALSRICNHPVEVVCAGRTDAGVHGTGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +N L I VD FHARFSA R Y Y I Sbjct: 61 IHFETEASRDMVAFTMGMNTLLPKDIAIRFAQPVAVD--FHARFSATARRYRYIIYNSPF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A Q+L+G HDFT+FR+IHCQA++P RTI H V G Sbjct: 119 RGAVLSEGVTHFHHPLDEVKMQEACQYLIGTHDFTSFRAIHCQANTPTRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +FLH +R+ GSL +G K L++ L ++R + A GLY Sbjct: 179 CYVIIDIKANAFLHHMVRNITGSLMDIGIHKQQPIWLKELLDCKERAKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|312870517|ref|ZP_07730636.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3] gi|311093979|gb|EFQ52304.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3] Length = 256 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 137/253 (54%), Gaps = 11/253 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q + +++ ++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKYPDPPISVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + + KALN+ L + I + VD+ FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDLPYQLSDESMRKALNSLLPLD--ILVKKAERVDESFHARYSAHRKTYRYRVD 118 Query: 118 TRQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P + +P +D + MR+AA+ +G HDFT+F + QA S +RT++ Sbjct: 119 QGDFVDPFKRNYTAHYKVP--VDIDKMRLAAKDFIGEHDFTSFVASGSQAKSNVRTVEKI 176 Query: 176 --DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 D + N + FL+ QIR V L VG G+ +D+++ L A+DR + Sbjct: 177 TVDRDPAQNEVVFEFTGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQARMT 236 Query: 234 APPEGLYFDSVEY 246 AP GLY SV+Y Sbjct: 237 APASGLYLVSVDY 249 >gi|69244266|ref|ZP_00602734.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257878927|ref|ZP_05658580.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257881556|ref|ZP_05661209.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257890781|ref|ZP_05670434.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|258615438|ref|ZP_05713208.1| tRNA pseudouridine synthase A [Enterococcus faecium DO] gi|261206813|ref|ZP_05921504.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289567364|ref|ZP_06447735.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|293563155|ref|ZP_06677615.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|293568529|ref|ZP_06679849.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|294614075|ref|ZP_06694002.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|294620867|ref|ZP_06700069.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|314939024|ref|ZP_07846289.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|314943424|ref|ZP_07850191.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|314948177|ref|ZP_07851572.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] gi|314952740|ref|ZP_07855717.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|314991371|ref|ZP_07856849.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|314995418|ref|ZP_07860520.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|68196452|gb|EAN10879.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257813155|gb|EEV41913.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257817214|gb|EEV44542.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257827141|gb|EEV53767.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|260078943|gb|EEW66643.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289160842|gb|EFD08771.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|291588865|gb|EFF20693.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|291593065|gb|EFF24647.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|291599569|gb|EFF30584.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291604885|gb|EFF34359.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|313590351|gb|EFR69196.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|313594045|gb|EFR72890.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|313595146|gb|EFR73991.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|313597796|gb|EFR76641.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|313641733|gb|EFS06313.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|313645389|gb|EFS09969.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] Length = 246 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + +N YL I I + + ++FH+R++A+ + Y Y + P A Sbjct: 66 KTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNNVIPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + G ++ Sbjct: 124 FERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIERKGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 V FL+ +R +G+L +G G +++ +++ R+ G P +GL+ D V Sbjct: 184 HFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|94677014|ref|YP_588808.1| tRNA pseudouridine synthase A [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220164|gb|ABF14323.1| tRNA pseudouridine synthase A [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 267 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 I+ + I YNGS Y+GWQRQK S+Q S+E+A+ +V E + V AGRTD+GVHA QV Sbjct: 7 IKIALGIAYNGSLYYGWQRQKELPSVQASLERALSIVANEKISVFCAGRTDTGVHATGQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +NA L S I++ V FHARFSA RSY Y I Sbjct: 67 VHFETVALRTNKAWTLGVNANLPAS--IAVRWAMTVTLNFHARFSATARSYRYIIYNHPL 124 Query: 122 PLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ ++ + LD M A Q L+G DFT+FR+ C + +P R + V Sbjct: 125 RPAMLGSSGYMHFYQPLDPLKMDRAGQCLLGERDFTSFRAQQCTSRTPWRNLHQLIVKRH 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + + A +FL+ +R+ VG L +G GK + L +DR G A +GLY Sbjct: 185 GSYIIVDITANAFLYRMVRNIVGCLIEIGSGKKPENWIADLLARRDRSLAGITARAKGLY 244 Query: 241 FDSVEY 246 +V Y Sbjct: 245 LVNVYY 250 >gi|317471507|ref|ZP_07930858.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA] gi|316901002|gb|EFV22965.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA] Length = 249 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 9/244 (3%) Query: 8 IEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 IEY+G+ Y GWQ+ N S+IQG +E + +TGE + + G+GRTD+GVHA Q+A+F Sbjct: 10 IEYDGTRYQGWQKLGKNANASTIQGKLESVLSKMTGESIQIIGSGRTDAGVHACGQIANF 69 Query: 65 DLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + C+ + YL + I I+ V ++FH+R +A +++Y YRI Sbjct: 70 HTDCSFS----CREIKEYLTKYLPSDIGIVTADEVSERFHSRLNAKQKTYQYRIAIPGTV 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E+ W P++L+ E M AA +G HDF F S+ S +RTI + + Sbjct: 126 NVFERKYLWKYPETLNIEKMNKAAAFCLGTHDFLGFSSVKKTKKSTVRTIYSIVIEEEHS 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + FL+ +R G+L +G G + Q++DRK+ G APP+GL+ Sbjct: 186 EIRLSFTGDGFLYNMVRILTGTLAEIGAGSRDPESIFHVFQSKDRKDAGITAPPQGLFLM 245 Query: 243 SVEY 246 +VEY Sbjct: 246 NVEY 249 >gi|257900124|ref|ZP_05679777.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] gi|257838036|gb|EEV63110.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] Length = 247 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + +N YL I I + + ++FHAR++A+ + Y Y + P A Sbjct: 66 KTNSEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNNVIPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + G ++ Sbjct: 124 FERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIERKGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 V FL+ +R +G+L +G G +++ +++ R+ G P +GL+ D V Sbjct: 184 HFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|197117301|ref|YP_002137728.1| tRNA pseudouridine synthase A [Geobacter bemidjiensis Bem] gi|238690881|sp|B5EFM8|TRUA_GEOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|197086661|gb|ACH37932.1| tRNA pseudouridines 38,39,40 synthase [Geobacter bemidjiensis Bem] Length = 250 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ Y GWQ Q NG ++Q +++A+ + GE +HG+GRTD+GVHA VA F Sbjct: 6 LIIEYDGTAYCGWQVQPNGRTVQEVLQEALAAMLGEKTPLHGSGRTDAGVHARGMVACFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + LN L I++ V +FH RF A + Y Y I+ L Sbjct: 66 TDKAMPLRAFREGLNCLL--PGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDDLRSPL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + W + LD + MR A VG HDF FR+ +C A + +R I D+ G L+ Sbjct: 124 SRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQEGCLLH 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLAPPEGLYFDSV 244 + V FL +R G+L VG GK + D+ + LQ DR++ G PP+GL V Sbjct: 184 LDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLQGGDRQQNSGMTVPPQGLCLMQV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|229548121|ref|ZP_04436846.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|257091270|ref|ZP_05585631.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|257417169|ref|ZP_05594163.1| tRNA pseudouridine synthase [Enterococcus faecalis AR01/DG] gi|300861430|ref|ZP_07107514.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|312905329|ref|ZP_07764444.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|229306807|gb|EEN72803.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|257000082|gb|EEU86602.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|257158997|gb|EEU88957.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG] gi|295114364|emb|CBL33001.1| pseudouridylate synthase I [Enterococcus sp. 7L76] gi|300848891|gb|EFK76644.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|310631353|gb|EFQ14636.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|315145838|gb|EFT89854.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141] gi|315162508|gb|EFU06525.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645] gi|315578608|gb|EFU90799.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630] Length = 246 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYLGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|293556963|ref|ZP_06675523.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] gi|294618124|ref|ZP_06697719.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|291595614|gb|EFF26912.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|291600783|gb|EFF31075.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] Length = 247 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + +N YL I I + + ++FH+R++A+ + Y Y + P A Sbjct: 66 KTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNNVIPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + G ++ Sbjct: 124 FERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIERKGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 V FL+ +R +G+L +G G +++ +++ R+ G P +GL+ D V Sbjct: 184 HFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|291530837|emb|CBK96422.1| pseudouridylate synthase I [Eubacterium siraeum 70/3] Length = 250 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 128/251 (50%), Gaps = 18/251 (7%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA V + Sbjct: 6 VTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAFVFN-- 63 Query: 66 LVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 V+ P+ K NA L I+ L+ + FHARF + + Y+YRI T Sbjct: 64 -VKTNCPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYRIYTGDVR 120 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS------SPIRTIDHFD 176 A P D E MR AA+ +VG HDF +F C+A + +RT+ D Sbjct: 121 DVFSADTALHYPYKPDIEKMRKAARLIVGEHDFASF----CKAEAKEHLLTTVRTVYSID 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ +EI+V FLH +R VG+L + +GK T D+ AL DR+ G PP Sbjct: 177 VEQTGDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPP 236 Query: 237 EGLYFDSVEYS 247 GLY + V Y Sbjct: 237 CGLYLNKVFYE 247 >gi|78221826|ref|YP_383573.1| tRNA pseudouridine synthase A [Geobacter metallireducens GS-15] gi|78193081|gb|ABB30848.1| tRNA pseudouridine synthase [Geobacter metallireducens GS-15] Length = 256 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 126/243 (51%), Gaps = 6/243 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY+G+ Y GWQ Q NG S+Q +E+A+ + E V VH +GRTD+GVHA VA F Sbjct: 18 LVLEYDGTNYAGWQIQPNGISVQQVVEEALARLLKEPVRVHSSGRTDAGVHARGMVAAFT 77 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI--ITRQAPL 123 + LNA L I+++ F+ RF A + Y Y I R++PL Sbjct: 78 TAKGLPMRAFSDGLNALLP--PDIAVMEALEAPDGFNPRFDAAGKHYRYTIHRGERRSPL 135 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + W ++LD M A H+VG HDF +FR+ C A + +R ID D+ G+L Sbjct: 136 C--RHYVWHARETLDLAAMEKGASHMVGEHDFASFRTAGCAARTTVRRIDAVDLALEGDL 193 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + I V FL +R VG+L VG G+ ++ D+ + + GP APP+GL Sbjct: 194 LHIDVKGSGFLRNMVRIMVGTLVEVGRGRRSADDVALLFRYPGERFAGPTAPPQGLCLME 253 Query: 244 VEY 246 V Y Sbjct: 254 VYY 256 >gi|87308089|ref|ZP_01090231.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645] gi|87289171|gb|EAQ81063.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645] Length = 260 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 10/247 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I+ Y+G+ Y GWQ Q + +IQG++E+ + +TGE + V G+GRTDSGVHA+ QV F Sbjct: 11 LIVSYDGTNYAGWQIQNDQRTIQGALERTLLKITGEKIRVTGSGRTDSGVHAIGQVVSFR 70 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + P ++ +ALNA L + +I +F+A AI++ Y Y + + Sbjct: 71 MQSQLSPDVMRRALNAELPPDIVVQSARNAI--PEFNAIDCAIKKRYRYLLQEGRIDDVF 128 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG---- 181 + AW + K L+ M+ AAQHL+G HDF +F S+ + + +R + FDV Sbjct: 129 SRQYAWFVKKELNFAAMQAAAQHLIGEHDFASFESVGSERMTTVRHV--FDVQVLRSERH 186 Query: 182 --NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + I V A FL+ +R VG+L VG G+ + + L A+ R G AP GL Sbjct: 187 EFDKVAIEVEANGFLYNMVRIIVGTLVDVGKGRRPPEWVAEVLAAKKRTAGGMTAPAHGL 246 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 247 YLLRVDY 253 >gi|218289976|ref|ZP_03494153.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius LAA1] gi|218239961|gb|EED07148.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius LAA1] Length = 262 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R +++ Y+GSG+ G+ RQ+ ++QG +E + + G +VV G+GRTD GVHA QV Sbjct: 6 RIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDIVVEGSGRTDRGVHARAQVV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFDL + P + ++ + VD FHARFS +R++Y Y + P Sbjct: 66 HFDL--PYGPPADRMVHVLHRRLPADLLPRQADEVDDGFHARFSVVRKTYRYTLDLAPLP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 +W +P+ LD M+ AA+HL+G HDFT+F + +R ID + G+ Sbjct: 124 SLYWYRFSWHLPEYLDLAAMQEAARHLLGEHDFTSFCAAEAPQRDKVRRIDRVEFRQDGS 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I FL +R VG+L VG GK + L+A+DR+ G APP GL Sbjct: 184 RLHIEFEGNGFLQYMVRILVGTLVKVGRGKERPDRIPLILEARDRRLAGETAPPHGLCLW 243 Query: 243 SVEYS 247 +VEY Sbjct: 244 NVEYP 248 >gi|295398321|ref|ZP_06808363.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563] gi|294973460|gb|EFG49245.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563] Length = 285 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ + ++Y+G+ + G+Q Q NG ++Q ++EKA+ L++ G + V G+GRTDSGVHAL Sbjct: 1 MPRFKVTLQYDGTPFVGFQVQPNGHTVQEALEKALKLMSKGHDIQVVGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + +A+N+ L D I I + V+ FHARF + Y+Y++ T Sbjct: 61 QVIHFDYPAEIGEEAVLRAMNSIL--DDAIRITKVERVEDDFHARFHTNGKKYIYKVDTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P D M+ A + ++G HDF +F S ++ +R I +V + Sbjct: 119 KFPSPFTRQYMYHHPYRTDVTRMQTALKDIIGVHDFKSFCSTKTDKTNFVREIYRAEVTA 178 Query: 180 FGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + V FL+ +R VG+ +GDG ++++ + A+DR E GP A Sbjct: 179 DPDAETLTFVFEGSGFLYNMVRILVGTTLQIGDGLRPVDEMKRLITAEDRNEAGPTAAAH 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLAEVYY 247 >gi|304405587|ref|ZP_07387246.1| tRNA pseudouridine synthase A [Paenibacillus curdlanolyticus YK9] gi|304345626|gb|EFM11461.1| tRNA pseudouridine synthase A [Paenibacillus curdlanolyticus YK9] Length = 248 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 125/242 (51%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M + Y+G+ Y G+Q Q +G++IQ +E AI +TGE + + G+GRTD+GVHA QV +F Sbjct: 6 VMTVSYDGTTYSGFQSQPSGNTIQDIVETAIHSLTGEQLRIIGSGRTDAGVHARGQVFNF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 A+N ++ D I IL + FHAR SA R++Y Y I R+ P Sbjct: 66 HTESRIPQERWALAMNT--RLPDDIVILEAWEAPEAFHARHSAKRKTYRYTIDRRKFPDV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + A+ P L MR A HL+G HDFT+F SI +RTI + G L+ Sbjct: 124 FSRMYAFHHPTPLQVGAMREALTHLIGEHDFTSFTSIQSTQPHHVRTIFEAWLEEDGPLL 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FL+ +R G++ VG+GK D+ L A DR GP A GL +V Sbjct: 184 YLFVTGNGFLYNMVRIIAGTMMWVGEGKLAPADIPAMLAAVDRTCAGPTAMAHGLMLWNV 243 Query: 245 EY 246 EY Sbjct: 244 EY 245 >gi|315127206|ref|YP_004069209.1| tRNA pseudouridine synthase A [Pseudoalteromonas sp. SM9913] gi|315015720|gb|ADT69058.1| tRNA pseudouridine synthase A [Pseudoalteromonas sp. SM9913] Length = 264 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +EKA+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVEKALSRICNHPVEIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V +N L I+I V + FHARFSA R Y Y I Sbjct: 61 VHFDTHAEREMVAFTLGMNTLL--PKDIAIRFAQPVAEDFHARFSATARRYRYVIYNYAF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A Q+L+G HDFT+FR++HCQA++ RTI H V G Sbjct: 119 RGAVLNEGVTHFHHPLDEVKMQQACQYLLGEHDFTSFRALHCQANTATRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 AYVIIDIKANAFLHHMVRNITGCLMDIGLHKHEPIWLKELLDVKERAKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|227550954|ref|ZP_03981003.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257893717|ref|ZP_05673370.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257896582|ref|ZP_05676235.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|293379717|ref|ZP_06625853.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] gi|227179913|gb|EEI60885.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257830096|gb|EEV56703.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257833147|gb|EEV59568.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|292641715|gb|EFF59889.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] Length = 247 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + +N YL I I + + ++FHAR++A+ + Y Y + P A Sbjct: 66 KTNTEIELSEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNNVIPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + G ++ Sbjct: 124 FERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIERKGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 V FL+ +R +G+L +G G +++ +++ R+ G P +GL+ D V Sbjct: 184 HFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|225026395|ref|ZP_03715587.1| hypothetical protein EUBHAL_00644 [Eubacterium hallii DSM 3353] gi|224956284|gb|EEG37493.1| hypothetical protein EUBHAL_00644 [Eubacterium hallii DSM 3353] Length = 256 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 134/254 (52%), Gaps = 10/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +++ Y+G+ Y GWQ Q NG +++ + K + E + + GA RTDSGVH+ Sbjct: 4 MKRFKLVVAYDGTNYCGWQIQPNGITVEEVLNKTLSRFLKEEIHIIGASRTDSGVHSFGN 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P LC ALN ++ + I I++ V FH R+ R++Y Y I + Sbjct: 64 VAVFDSETTIPPEKLCFALNP--QLPEDIRIVSSEQVPGDFHPRYCDTRKTYEYHIQNGK 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL E+ + L+ L+ + M+ A+Q+LVG HDF +F + QA + +RT+ +V + Sbjct: 122 IPLPTERLYSHLVIFPLNIQAMQEASQYLVGTHDFKSFCAAKTQAQTTVRTVTGIEVEAH 181 Query: 181 --------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + IRV FL+ +R G+L VG G + +++ L+A DR + G Sbjct: 182 PLSEGEYPSKKVIIRVTGEGFLYNMVRIISGTLIKVGLGVYPPEHVKQILEACDRSQAGE 241 Query: 233 LAPPEGLYFDSVEY 246 P +GL+ +EY Sbjct: 242 TVPAKGLFLKKIEY 255 >gi|238925343|ref|YP_002938860.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] gi|238877019|gb|ACR76726.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] Length = 252 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + + + + E + V GA RTD+GVH+L V Sbjct: 9 MRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLKEDIKVTGASRTDAGVHSLGNV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD + ALN K+ + I +++ V FH RFS R++Y YRI+ + Sbjct: 69 CMFDTNTRMPAEKISYALNQ--KLPEDIVVVDSCEVSDDFHPRFSKSRKTYEYRILNARF 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M AA++L+G HDF +F S + QA + +RTI V+ G Sbjct: 127 RNPTRRLDTYFYHYPLDTEKMSEAAKYLIGEHDFASFCSANSQAQTTVRTIYDCTVSKAG 186 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L +G + ++ + DR GP AP GL Sbjct: 187 DIITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIATTDRAAAGPTAPAHGLTM 246 Query: 242 DSVEY 246 ++Y Sbjct: 247 IGLKY 251 >gi|257886188|ref|ZP_05665841.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|257822044|gb|EEV49174.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] Length = 247 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + +N YL I I + + ++FH+R++A+ + Y Y + P A Sbjct: 66 KTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNNVIPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + G ++ Sbjct: 124 FERNHSFYFPQELDMDKLDAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIERKGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 V FL+ +R +G+L +G G +++ +++ R+ G P +GL+ D V Sbjct: 184 HFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|323485798|ref|ZP_08091133.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323693150|ref|ZP_08107368.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] gi|323400786|gb|EGA93149.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323502633|gb|EGB18477.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] Length = 265 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 137/252 (54%), Gaps = 12/252 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++++Y+G+ Y GWQ+Q N ++QG +E + + G V VHG+GRTD+GVHAL QVA+F Sbjct: 8 ILLQYDGTRYDGWQKQGNTQQTVQGKLEAVLSCLAGGPVEVHGSGRTDAGVHALGQVANF 67 Query: 65 DLV--------REWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 L E +I K LN YL + I +L +FH+R +A+ ++Y+YR Sbjct: 68 HLPLSVFCGSQTEAADMIRIKNYLNEYL--PEDIRVLVAEEARPRFHSRLNALSKTYIYR 125 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I T E+ + + K D E M+ AA LVG HDF F S+ S +RTI+ Sbjct: 126 IETADKNDVFERKYRYGLGKEPDLEIMKRAASILVGTHDFRAFSSLKKTKKSTVRTINRI 185 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D+ G +EI + FL+ +R VG+L G + + +++AL++ DR G AP Sbjct: 186 DIRRDGTQLEILLEGNGFLYNMVRIIVGTLVEAGLLERSVQSVKEALESLDRSLAGRTAP 245 Query: 236 PEGLYFDSVEYS 247 +GL+ +V Y Sbjct: 246 AKGLFLAAVAYE 257 >gi|229496121|ref|ZP_04389842.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC 35406] gi|229316952|gb|EEN82864.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC 35406] Length = 264 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I ++GS Y GWQRQ NG ++Q IE+A+ L+ + + GAGRTD+GV+A Sbjct: 1 MPRYFLDIAFDGSSYCGWQRQPNGLAVQQVIEEALSLLFRTPISIVGAGRTDAGVNAYSL 60 Query: 61 VAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AH D+ + P K+LN L I+I ++ V HARF AI R YLY I Sbjct: 61 PAHVDIPETAKGTPYRWRKSLNGILP--HNINIRSIRPVQPSAHARFDAISRRYLYFIAE 118 Query: 119 RQAPLALEKGRAWLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-- 174 + P R W++P D E M AAQ+L+G HDFT+F +H + I TI Sbjct: 119 ERDPF----NRQWVLPVRPFPDIEKMNQAAQYLLGTHDFTSFSRLHTDTHTNICTIQEAF 174 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +S+ + + + A FL +R+ VG+L VG D+ + ++AQDR G Sbjct: 175 WSPSSYPSTWQFSITANRFLRNMVRAIVGTLLEVGASTLAPEDIIEIIRAQDRNRAGASV 234 Query: 235 PPEGLYFDSVEY 246 E L+ VEY Sbjct: 235 RGEALFLAHVEY 246 >gi|227550751|ref|ZP_03980800.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257887991|ref|ZP_05667644.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257893205|ref|ZP_05672858.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257896390|ref|ZP_05676043.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|293379476|ref|ZP_06625620.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] gi|293570714|ref|ZP_06681764.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|227180069|gb|EEI61041.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257824045|gb|EEV50977.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257829584|gb|EEV56191.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257832955|gb|EEV59376.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|291609186|gb|EFF38458.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|292641999|gb|EFF60165.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] Length = 248 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV ++FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEEFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDV 177 + + A P LD E ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|313631806|gb|EFR98984.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL N1-067] Length = 248 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + I+ ++ D FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKALQVMTPFDISFLIVEEALAD--FHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT---IDHFD 176 + + A P L+ E M++A++ LVG HDFT+F S + S +RT ID ++ Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + + + I FL+ +R G+L G G+ + D+ KAL A+DR++ AP Sbjct: 179 EDD--DTLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEYS 247 P+GLY V+Y Sbjct: 237 PQGLYLWRVDYE 248 >gi|219853559|ref|YP_002470681.1| hypothetical protein CKR_0216 [Clostridium kluyveri NBRC 12016] gi|219567283|dbj|BAH05267.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 247 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++IEY+G+ Y GWQRQ N +IQ +E+AI TGE V G+ RTD+GVHA V +F Sbjct: 9 LVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGFVCNFF 68 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + LN L + I++L+ VD FH+R+ + Y Y I+T P + Sbjct: 69 TASKIPTSNIKMVLNTLL--PEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGDRPPVI 126 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + + LD E ++ + ++ +G HDF+ F+ A S IRTI V N+I+ Sbjct: 127 GRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKEKNIIK 186 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 +V FL+ +R +G+L VG G+++ ++ L+++DR + G P +GL + V Sbjct: 187 FNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCLEKVF 246 Query: 246 Y 246 Y Sbjct: 247 Y 247 >gi|222056725|ref|YP_002539087.1| tRNA pseudouridine synthase A [Geobacter sp. FRC-32] gi|254789637|sp|B9M6W5|TRUA_GEOSF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221566014|gb|ACM21986.1| tRNA pseudouridine synthase A [Geobacter sp. FRC-32] Length = 244 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ Y GWQ Q NG +IQ IE+++ + G+ V + +GRTD+GVHAL VA F Sbjct: 6 LIIEYDGTAYCGWQLQPNGITIQQVIEESLEKMLGQSVRLQSSGRTDAGVHALGMVAVFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ++ LN L I+I + S V F+ R AI + Y Y I + L Sbjct: 66 TQKDLPVRAFSDGLNCLLP--PDIAIRDASEVPLSFNPRADAISKHYRYTIYNSKRRSPL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + +W + L+ E M++ A H VG HDF FR+ +C A + IR + H V G+ + Sbjct: 124 TRLNSWHLRGILNMELMQLGASHFVGEHDFAAFRASNCVAKTTIRRMFHVSVAKVGDSVI 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V FL +R G+L VG GK + + L DR G APP+GL V Sbjct: 184 IDVHGSGFLKNMVRVIAGTLVAVGQGKLDPSAIPGLLAGGDRSASGITAPPQGLCLMEVF 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|16801808|ref|NP_472076.1| tRNA pseudouridine synthase A [Listeria innocua Clip11262] gi|24212565|sp|Q927P1|TRUA_LISIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16415283|emb|CAC97973.1| truA [Listeria innocua Clip11262] gi|313616961|gb|EFR89587.1| tRNA pseudouridine synthase A [Listeria innocua FSL S4-378] Length = 248 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 130/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG+FG+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y I Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEAPADFHARFGTVGKEYRYVIKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M+ A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDIAKMKQASERLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ KAL A DR++ AP Sbjct: 177 YEEDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLISKTAP 236 Query: 236 PEGLYFDSVEYS 247 P+GLY V+Y Sbjct: 237 PQGLYLWRVDYE 248 >gi|194366624|ref|YP_002029234.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia R551-3] gi|238693473|sp|B4SQV6|TRUA_STRM5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|194349428|gb|ACF52551.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia R551-3] Length = 256 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 13/246 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E+A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLEQALSSVADTPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD R W+ L ++ +I++ V FHARFSA R Y YR Sbjct: 61 VVHFDTDVVRDPRAWM-------LGTTTRLPRSIAVRWCVPVADDFHARFSARARRYRYR 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ R+ ALE+ ++LD M IA Q L+G +DF FRS+ CQA R + Sbjct: 114 LLNREVRPALERQTLSWERRALDETRMHIAGQALLGENDFNAFRSVQCQALHARRELQSL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V+ G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP AP Sbjct: 174 QVSRHGEVIEVSVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAP 233 Query: 236 PEGLYF 241 P+GL F Sbjct: 234 PQGLVF 239 >gi|319763817|ref|YP_004127754.1| tRNA pseudouridine synthase a [Alicycliphilus denitrificans BC] gi|330823919|ref|YP_004387222.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans K601] gi|317118378|gb|ADV00867.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans BC] gi|329309291|gb|AEB83706.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans K601] Length = 272 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 125/258 (48%), Gaps = 14/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGQAYSGWQSQPSGNTVQDHLEAALGRFATQKVATICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FHAR A+ R Y Y ++ Sbjct: 61 VHFDTGLQRAPFSWVRGTNTFLP--PDIAVQWAQPVPDAFHARACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + LD + M+ A QHL+G HDF++FR+ CQA SP++T+ + G Sbjct: 119 RPSVEAGRVGWVFHELDGQAMQDAVQHLLGEHDFSSFRASACQAKSPVKTLHRIAITRRG 178 Query: 182 N------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 +FLH IR+ +G + +G G + + + L A+ R Sbjct: 179 PANGPSLHGCAPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPQWMRQVLDARSRDA 238 Query: 230 CGPLAPPEGLYFDSVEYS 247 P P+GLYF Y+ Sbjct: 239 AAPTFSPDGLYFLGPVYA 256 >gi|313201346|ref|YP_004040004.1| tRNA pseudouridine synthase a [Methylovorus sp. MP688] gi|312440662|gb|ADQ84768.1| tRNA pseudouridine synthase A [Methylovorus sp. MP688] Length = 225 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 114/209 (54%), Gaps = 12/209 (5%) Query: 43 VVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIV 97 V V AGRTD+GVHAL QV HF+ E + LNA+++ + ++ +L V Sbjct: 6 VRVIAAGRTDTGVHALAQVVHFETTTE-------RPLNAWVRGVNAGLPSSVRVLWAQQV 58 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 D +FHARFSA +R Y Y + + A+ G+ + LD + M AA HL+G HDF+ Sbjct: 59 DDEFHARFSARQRYYQYILFDQAVAPAILAGKVGWFHQPLDVDAMAEAAAHLIGEHDFSA 118 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 FR+ CQA SP+RT+ +V G I +FLH Q+R+ VG+L VG G Sbjct: 119 FRAAECQAKSPVRTLQQAEVRRAGQAILFEFSGNAFLHHQVRNMVGALVYVGKGSQPPAF 178 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +++ LQ+ DR+ P P+GLY V Y Sbjct: 179 IQQLLQSHDRRLAPPTFSPDGLYLSGVGY 207 >gi|227543592|ref|ZP_03973641.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A] gi|300909379|ref|ZP_07126840.1| tRNA-pseudouridine synthase I [Lactobacillus reuteri SD2112] gi|227186432|gb|EEI66503.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A] gi|300893244|gb|EFK86603.1| tRNA-pseudouridine synthase I [Lactobacillus reuteri SD2112] Length = 256 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q N +++ +++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPNPAIPVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + KALN+ L + I I +VD FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDIPYHLSNESMRKALNSILPLD--ILIKKAELVDNDFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ L+ E MR AA LVG HDFT+F + QA S +RTI+ + Sbjct: 119 QGEFVNPFKRNYTSHFKYPLNLEKMRKAANDLVGTHDFTSFVASGSQAKSNVRTIESITI 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + N + FL+ Q+R V L +G + D+ + L+A+DR AP Sbjct: 179 KRDELRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLEAKDRTLARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY +V+Y Sbjct: 239 ASGLYLVNVDY 249 >gi|167746683|ref|ZP_02418810.1| hypothetical protein ANACAC_01394 [Anaerostipes caccae DSM 14662] gi|167653643|gb|EDR97772.1| hypothetical protein ANACAC_01394 [Anaerostipes caccae DSM 14662] Length = 249 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 9/244 (3%) Query: 8 IEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 IEY+G+ Y GWQ+ N S+IQG +E + +TGE + + G+GRTD+GVHA Q+A+F Sbjct: 10 IEYDGTRYQGWQKLGKNANASTIQGKLESVLSKMTGESIQIIGSGRTDAGVHACGQIANF 69 Query: 65 DLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + C+ + YL + I I+ V ++FH+R +A +++Y YRI Sbjct: 70 HTDCSFS----CREIKEYLTKYLPSDIGIVTADEVSERFHSRLNAKQKTYQYRIAIPGTV 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E+ W P++L+ E M AA +G HDF F S+ S +RTI + + Sbjct: 126 NVFERKYLWKYPETLNIEKMNKAAAFCLGTHDFLGFSSVKKTKKSTVRTIYSIVIEEEHS 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + FL+ +R G+L +G G + Q++DRK+ G APP GL+ Sbjct: 186 EIRLSFTGDGFLYNMVRILTGTLAEIGAGTRDPESIFHVFQSKDRKDAGITAPPHGLFLM 245 Query: 243 SVEY 246 +VEY Sbjct: 246 NVEY 249 >gi|153952894|ref|YP_001393659.1| tRNA pseudouridine synthase A [Clostridium kluyveri DSM 555] gi|189029994|sp|A5N4T0|TRUA_CLOK5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146345775|gb|EDK32311.1| TruA [Clostridium kluyveri DSM 555] Length = 244 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++IEY+G+ Y GWQRQ N +IQ +E+AI TGE V G+ RTD+GVHA V +F Sbjct: 6 LVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGFVCNFF 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + LN L + I++L+ VD FH+R+ + Y Y I+T P + Sbjct: 66 TASKIPTSNIKMVLNTLL--PEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGDRPPVI 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + + LD E ++ + ++ +G HDF+ F+ A S IRTI V N+I+ Sbjct: 124 GRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKEKNIIK 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 +V FL+ +R +G+L VG G+++ ++ L+++DR + G P +GL + V Sbjct: 184 FNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCLEKVF 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|238920608|ref|YP_002934123.1| tRNA pseudouridine synthase A, [Edwardsiella ictaluri 93-146] gi|238870177|gb|ACR69888.1| tRNA pseudouridine synthase A, putative [Edwardsiella ictaluri 93-146] Length = 275 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 128/241 (53%), Gaps = 6/241 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV HF Sbjct: 21 IEYDGSRYAGWQRQREVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVHFTTH 80 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 +NA+L +++ + V FHARFSA R Y Y I R P L+ Sbjct: 81 ALRQEGAWTMGVNAHLP--KDVAVRWVKDVSPDFHARFSATARRYRYVIYNHRYRPAVLQ 138 Query: 127 KGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 G + +P LD E M A Q L+G +DF+ FR+ CQ+ +P R + H V+ +G+ + Sbjct: 139 SGVTHFYLP--LDAERMARAGQALLGENDFSAFRAAQCQSRTPWRNVSHLRVDRYGSYVV 196 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A +F+H +R+ VGSL VG G + + L +DR A GLY +V+ Sbjct: 197 VDIKANAFVHHMVRNIVGSLLEVGCGNQPESWIAGLLAGRDRTLAAATAKAAGLYLVAVD 256 Query: 246 Y 246 Y Sbjct: 257 Y 257 >gi|148270348|ref|YP_001244808.1| tRNA pseudouridine synthase ACD [Thermotoga petrophila RKU-1] gi|166229847|sp|A5IM09|TRUA_THEP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147735892|gb|ABQ47232.1| tRNA pseudouridine synthase A [Thermotoga petrophila RKU-1] Length = 245 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYIQAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + + A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIRNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR A ++L G HDFT+F++ P+RTI + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAVKYLEGTHDFTSFKT-GSDERDPVRTIYRIRILR 177 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP G Sbjct: 178 LKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|148544665|ref|YP_001272035.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016] gi|184154018|ref|YP_001842359.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112] gi|194466922|ref|ZP_03072909.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23] gi|227363788|ref|ZP_03847895.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3] gi|325682999|ref|ZP_08162515.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A] gi|166991164|sp|A5VLH4|TRUA_LACRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229557996|sp|B2G8U7|TRUA_LACRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148531699|gb|ABQ83698.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016] gi|183225362|dbj|BAG25879.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112] gi|194453958|gb|EDX42855.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23] gi|227071145|gb|EEI09461.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3] gi|324977349|gb|EGC14300.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A] Length = 256 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 135/252 (53%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M RY + Y+G+ + G+Q Q N +++ +++ A+ + T I V+ G+GRTD+GVH Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVI-GSGRTDAGVH 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QVAHFD+ + KALN+ L + I I +VD FHAR+SA R++Y YR+ Sbjct: 60 ALNQVAHFDIPYHLSNESMRKALNSILPLD--ILIKKAELVDNDFHARYSAHRKTYRYRV 117 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + ++ L+ E MR AA LVG HDFT+F + QA S +RTI++ Sbjct: 118 DQGEFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFVASGSQAKSNVRTIENIT 177 Query: 177 V--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + N + FL+ Q+R V L +G + D+ + L+A+DR A Sbjct: 178 IKRDEVRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLKAKDRTLARMTA 237 Query: 235 PPEGLYFDSVEY 246 P GLY +V+Y Sbjct: 238 PASGLYLVNVDY 249 >gi|222111761|ref|YP_002554025.1| tRNA pseudouridine synthase a [Acidovorax ebreus TPSY] gi|254789633|sp|B9MDL6|TRUA_ACIET RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221731205|gb|ACM34025.1| tRNA pseudouridine synthase A [Acidovorax ebreus TPSY] Length = 274 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 128/259 (49%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRMALGVSYNGQAYNGWQSQPSGNTVQDRLEAALGRFATQEVHTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A+ R Y Y ++ Sbjct: 61 VHFDTQLQRAPFSWVRGTNTFLPTD--IAVQWAQPVPDAFHSRACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--- 178 +++ GR + +LD + M A QHL+G HDFT+FR+ CQA SP++T+ D+ Sbjct: 119 RPSVDAGRVGWVFHALDEQAMHRAVQHLLGEHDFTSFRASACQAKSPVKTLHRIDITRRA 178 Query: 179 -----SFGNLIEIRVVAR------SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 S G I R +FLH IR+ +G + +G G + + L+A+ R Sbjct: 179 PPAGESTGTHGCIPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPEWMRTVLEARSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 DAAAPTFSPDGLYFQGPVY 257 >gi|256956829|ref|ZP_05561000.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|257078499|ref|ZP_05572860.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|294781084|ref|ZP_06746435.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|300861778|ref|ZP_07107858.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|307269121|ref|ZP_07550482.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|307286980|ref|ZP_07567055.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|312901088|ref|ZP_07760376.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|256947325|gb|EEU63957.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|256986529|gb|EEU73831.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|294451887|gb|EFG20338.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|295112531|emb|CBL31168.1| pseudouridylate synthase I [Enterococcus sp. 7L76] gi|300848303|gb|EFK76060.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|306501926|gb|EFM71215.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|306514601|gb|EFM83155.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|311291760|gb|EFQ70316.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|315031173|gb|EFT43105.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017] gi|315035981|gb|EFT47913.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027] gi|315145370|gb|EFT89386.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141] gi|315165868|gb|EFU09885.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302] Length = 249 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + IRTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKIRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|118581782|ref|YP_903032.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379] gi|166228745|sp|A1AUF4|TRUA_PELPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118504492|gb|ABL00975.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379] Length = 244 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 6/243 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ Y GWQ Q NG ++Q +E+A+ + GE V + +GRTD+GVHA VA F Sbjct: 6 LTIEYDGTNYAGWQVQPNGLAVQQVLEEALLRLLGERVRLRSSGRTDAGVHARAMVASFT 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-- 123 R N +L D I+IL+ + +F A RS YR AP+ Sbjct: 66 TSRSLPLQAFVGGANRFLP--DDIAILSAAEAAPEFRPIQDA--RSKWYRYTIYNAPVRS 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L + +W + + LD + M++AA H GRHDF FR+ +C A + +R ID + S G L Sbjct: 122 PLRRLFSWHVREPLDTDAMQLAAHHFPGRHDFAAFRASNCAAKTTLRRIDSVTIASEGEL 181 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I I V+ FL +R G+L VG G++ + L+ DRK+ G AP GL Sbjct: 182 IVIDVIGEGFLKNMVRVMAGTLVDVGRGRFEPERVAWLLENPDRKKAGVTAPACGLCLMD 241 Query: 244 VEY 246 V Y Sbjct: 242 VSY 244 >gi|58582878|ref|YP_201894.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624740|ref|YP_452112.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577717|ref|YP_001914646.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae PXO99A] gi|62901158|sp|Q5GXR2|TRUA_XANOR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123766543|sp|Q2P0T9|TRUA_XANOM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689565|sp|B2SVP0|TRUA_XANOP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58427472|gb|AAW76509.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368680|dbj|BAE69838.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522169|gb|ACD60114.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 257 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ FHARFSA R Y Y Sbjct: 61 QVVHFDSDAHREPRGWM-------LGTTARLPPSIAVRWCVPAAADFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD + M +AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTLSWERRPLDADAMHVAAQALLGENDFSAFRSVQCQALHARRNLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP A Sbjct: 174 IHVQRIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|69247200|ref|ZP_00604262.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257878755|ref|ZP_05658408.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257881397|ref|ZP_05661050.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257890614|ref|ZP_05670267.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|258615179|ref|ZP_05712949.1| tRNA pseudouridine synthase A [Enterococcus faecium DO] gi|293562977|ref|ZP_06677444.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|314937639|ref|ZP_07844965.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|314942862|ref|ZP_07849675.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|314948002|ref|ZP_07851406.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] gi|314950919|ref|ZP_07853988.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|314991433|ref|ZP_07856910.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|314995046|ref|ZP_07860166.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|68194965|gb|EAN09433.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257812983|gb|EEV41741.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257817055|gb|EEV44383.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257826974|gb|EEV53600.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|291605103|gb|EFF34570.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|313590772|gb|EFR69617.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|313593913|gb|EFR72758.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|313596928|gb|EFR75773.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|313598334|gb|EFR77179.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|313643016|gb|EFS07596.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|313645600|gb|EFS10180.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] Length = 248 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDV 177 + + A P LD E ++ A L+G HDFT+F + IRTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKIRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|166712630|ref|ZP_02243837.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 257 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ FHARFSA R Y Y Sbjct: 61 QVVHFDSDARREPRGWM-------LGTTARLPPSIAVRWCVPTAADFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD + M +AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTLSWERRPLDADAMHVAAQALLGENDFSAFRSVQCQALHARRNLQT 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP A Sbjct: 174 IHVQRIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIAMLLAGRDRTVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|315149110|gb|EFT93126.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012] Length = 246 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERSGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|257088682|ref|ZP_05583043.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|256997494|gb|EEU84014.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|315160761|gb|EFU04778.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645] gi|315579360|gb|EFU91551.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630] Length = 249 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLVRMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|329577713|gb|EGG59139.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467] Length = 249 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGAHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + IRTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKIRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|295401888|ref|ZP_06811851.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius C56-YS93] gi|294976018|gb|EFG51633.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius C56-YS93] Length = 248 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 125/241 (51%), Gaps = 3/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G+ +FG+Q Q ++QG +E+A+ + G+ + V +GRTD+GVHA QV HFD Sbjct: 9 LSYDGTHFFGYQIQPGKRTVQGELEQALEQIHKGKAIRVTASGRTDAGVHAYGQVIHFDT 68 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 P KALNA L D I I + FHARFSA + Y Y++ Q Sbjct: 69 FLSLSPEQWKKALNALL--PDDIVIKDAQEAAPSFHARFSATAKEYRYKVRIAQERDVFL 126 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + + P LD E M A + + G HDFT+F S +RTI D+ +L+E Sbjct: 127 RHYCYHYPYPLDMEAMGRALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMTVRDDLLEF 186 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + FL+ +R VG++ VG GK + + AL A+DR+ G APP+GLY V Y Sbjct: 187 CFIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGKTAPPQGLYLWKVYY 246 Query: 247 S 247 Sbjct: 247 D 247 >gi|167750462|ref|ZP_02422589.1| hypothetical protein EUBSIR_01438 [Eubacterium siraeum DSM 15702] gi|167656613|gb|EDS00743.1| hypothetical protein EUBSIR_01438 [Eubacterium siraeum DSM 15702] Length = 250 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 18/251 (7%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA V + Sbjct: 6 VTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAFVFN-- 63 Query: 66 LVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 V+ P+ K NA L I+ L+ + FHARF + + Y+Y+I T Sbjct: 64 -VKTNCPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYKIYTGDVR 120 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS------SPIRTIDHFD 176 A P D E MR AA+ +VG HDF +F C+A + +RT+ D Sbjct: 121 DVFSADTALHYPYKPDIEKMRKAARLIVGEHDFASF----CKAEAKEHLLTTVRTVYSID 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ +EI+V FLH +R VG+L + +GK T D+ AL DR+ G PP Sbjct: 177 VEQTGDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPP 236 Query: 237 EGLYFDSVEYS 247 GLY + V Y Sbjct: 237 CGLYLNKVFYE 247 >gi|312904650|ref|ZP_07763805.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|310632002|gb|EFQ15285.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] Length = 249 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLVRMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLVGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|293388406|ref|ZP_06632914.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|291082181|gb|EFE19144.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] Length = 280 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 40 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 99 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 100 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 157 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 158 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 217 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 218 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 277 Query: 245 EY 246 Y Sbjct: 278 YY 279 >gi|89900579|ref|YP_523050.1| tRNA pseudouridine synthase A [Rhodoferax ferrireducens T118] gi|123278889|sp|Q21XI4|TRUA_RHOFD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89345316|gb|ABD69519.1| tRNA pseudouridine synthase A [Rhodoferax ferrireducens T118] Length = 260 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q + ++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRLALGVSYNGQAYQGWQSQLSRQTVQDQLEMALSKLASHRVSTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + NA L I++ V +FH R SA+ R Y Y ++ Sbjct: 61 IHFDTPLDRAPNSWVRGTNALLP--RDIAVEWARPVPPEFHCRASALSRRYAYILLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++ G+ K L+ M+ AA HL+G HDF++FR+ CQA SP++ + D++ G Sbjct: 119 RPSIDAGQVGWTFKPLEQVAMQQAASHLLGEHDFSSFRASACQALSPVKMLQRLDISRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH IR+ +G L VG GK L++ L A++R P GLYF Sbjct: 179 ACWRFEFEANAFLHHMIRNIMGCLITVGQGKKPPEWLKEVLLARNRNVAAPTFSAHGLYF 238 Query: 242 DSVEYS 247 Y+ Sbjct: 239 LGPRYA 244 >gi|140053519|gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula] Length = 361 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 100/315 (31%), Positives = 148/315 (46%), Gaps = 71/315 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ +FG+Q+Q ++ G +E A G+ V V + RTD+GVHAL V Sbjct: 43 RYLVAVEYIGTRFFGFQKQLTDRTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHALSNVC 102 Query: 63 HFDLVR-----------EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L K + ++++++ V FHAR+ A R Sbjct: 103 HVDIERISKRKPGEVLQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKAQER 162 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-- 167 +Y YR+++ L+ EK RAW IP+ L+ M+ A + LVG HDF++FR+ CQA S Sbjct: 163 TYFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQAKSPI 222 Query: 168 -------------------------PIRTIDH---FDVNS-------------------- 179 PI D F NS Sbjct: 223 RSLDELSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSETVIPLGSSARIDEVSASKE 282 Query: 180 ---FGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 FG + + AR+FL+ Q+R VG LK VG G T TD+E+ L A+ Sbjct: 283 DVGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTATS 342 Query: 232 PLAPPEGLYFDSVEY 246 P+AP GLY V+Y Sbjct: 343 PMAPACGLYLGEVKY 357 >gi|293567901|ref|ZP_06679242.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|291589486|gb|EFF21293.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] Length = 248 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + +V + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEVVSEDFHARYLVTEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDV 177 + + A P LD E ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|225849320|ref|YP_002729484.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium azorense Az-Fu1] gi|225643913|gb|ACN98963.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium azorense Az-Fu1] Length = 244 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 127/245 (51%), Gaps = 9/245 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + I Y G+ Y GWQRQKN IQ IE + + E + + G+GRTD+GVHAL QVA+ Sbjct: 7 YKLTISYIGTRYSGWQRQKNAVGIQQIIEDLLEKLFKEKITLIGSGRTDAGVHALNQVAN 66 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P + LNA K+ IS+ + VD F+ARFSA ++YLYRI T+ P Sbjct: 67 FKTYSYKDPSTIYSYLNA--KLPRDISVKKVEEVDLNFNARFSAKGKTYLYRIYTKPDPF 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF--G 181 GR W K LD M + L D T S+ + + + +D ++ + G Sbjct: 125 LY--GRGWFFDKDLDIVKMLQGIEILKKYKDLT---SLAKEGNYIRKEVDLREIKLYYDG 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I+I + A FL +R VG L +G G + + E ++A+D + LAPPEGLY Sbjct: 180 KIIDIEITASHFLRNLVRRIVGHLVAIGRGSLSLQEFEDIIKAKDSSKGKFLAPPEGLYL 239 Query: 242 DSVEY 246 V Y Sbjct: 240 KEVYY 244 >gi|197120829|ref|YP_002132780.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] gi|196170678|gb|ACG71651.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] Length = 245 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA QV F Sbjct: 6 LVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQVVSFP 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 R +NA L +++ S+ F AR SA + Y Y I L Sbjct: 66 EDRPLPVKAYVMGMNALL--PPDVAVRAASLEPDGFDARRSARGKRYRYVIENLPTRAPL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGNLI 184 + +AW L+ ++R AA HLVGRHDF F++ C +R + DV G I Sbjct: 124 TRLQAWQHFHPLELASVREAAAHLVGRHDFAAFQASDCACEHAVREVRRLDVLGEAGGRI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL+ + V Sbjct: 184 EVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLDLLARGDRTEAGPTAPPQGLFLEEV 243 Query: 245 EY 246 Y Sbjct: 244 FY 245 >gi|227554442|ref|ZP_03984489.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|229547551|ref|ZP_04436276.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255970776|ref|ZP_05421362.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|256761150|ref|ZP_05501730.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256960384|ref|ZP_05564555.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|257080567|ref|ZP_05574928.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|293384357|ref|ZP_06630242.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|307274425|ref|ZP_07555609.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|307287287|ref|ZP_07567351.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|307289762|ref|ZP_07569700.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|312902050|ref|ZP_07761311.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|312908558|ref|ZP_07767502.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|312908972|ref|ZP_07767834.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|312951751|ref|ZP_07770643.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|227176427|gb|EEI57399.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|229307324|gb|EEN73311.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255961794|gb|EET94270.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|256682401|gb|EEU22096.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256950880|gb|EEU67512.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|256988597|gb|EEU75899.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|291078349|gb|EFE15713.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|306499218|gb|EFM68695.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|306501620|gb|EFM70914.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|306508935|gb|EFM78021.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|310625525|gb|EFQ08808.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|310630239|gb|EFQ13522.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|311290672|gb|EFQ69228.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|311290832|gb|EFQ69388.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|315030617|gb|EFT42549.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000] gi|315148974|gb|EFT92990.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244] gi|315153400|gb|EFT97416.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031] gi|315160015|gb|EFU04032.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312] gi|315166006|gb|EFU10023.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302] gi|315575028|gb|EFU87219.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B] gi|315581086|gb|EFU93277.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A] gi|323478960|gb|ADX78399.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62] Length = 246 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|126697674|ref|YP_001086571.1| tRNA pseudouridine synthase 1 [Clostridium difficile 630] gi|254973765|ref|ZP_05270237.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-66c26] gi|255091155|ref|ZP_05320633.1| tRNA pseudouridine synthase 1 [Clostridium difficile CIP 107932] gi|255099266|ref|ZP_05328243.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-63q42] gi|255305049|ref|ZP_05349221.1| tRNA pseudouridine synthase 1 [Clostridium difficile ATCC 43255] gi|255312809|ref|ZP_05354392.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-76w55] gi|255515568|ref|ZP_05383244.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-97b34] gi|255648663|ref|ZP_05395565.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-37x79] gi|260681880|ref|YP_003213165.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196] gi|260685478|ref|YP_003216611.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291] gi|306518785|ref|ZP_07405132.1| tRNA pseudouridine synthase ACD [Clostridium difficile QCD-32g58] gi|115249111|emb|CAJ66922.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile] gi|260208043|emb|CBA60248.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196] gi|260211494|emb|CBE01638.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291] Length = 243 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 11/243 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I+YNG Y GWQ+Q + IQG+IE+AI+ +T E + G+GRTDSGVHA+ Q+A+F + Sbjct: 8 IQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETSLIGSGRTDSGVHAIGQIANFKIN 67 Query: 68 R----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 E +P+ ALNA K+ IS++ V+ FH+R+SA ++Y Y + + Sbjct: 68 SGISIESIPM----ALNA--KLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFRN 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + ++ + LD + M A+ L+G HDF F S +RTI D++ +L Sbjct: 122 PILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSGSSVKDTVRTIYDIDISKKDDL 181 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + FL+ +R VG+L +G G+ L+ +Q++ R CG AP +GL+ Sbjct: 182 ITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLD-IIQSKTRSRCGHTAPAQGLFLKK 240 Query: 244 VEY 246 V Y Sbjct: 241 VHY 243 >gi|319792244|ref|YP_004153884.1| tRNA pseudouridine synthase a [Variovorax paradoxus EPS] gi|315594707|gb|ADU35773.1| tRNA pseudouridine synthase A [Variovorax paradoxus EPS] Length = 273 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 131/249 (52%), Gaps = 13/249 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHAL 58 +R + I YNG Y GWQ Q++G ++Q +E A+ + G AGRTD+GVHAL Sbjct: 1 MRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAADPSGRIGTLCAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD E P + N +L D I++ V +FH R SA+ R YLY + Sbjct: 61 MQVVHFDTEIEREPFSWMRGTNRFLP--DDIAVQWAQPVPDEFHCRASALARRYLY--VL 116 Query: 119 RQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 Q+P+ +L+ GR LD + MR AA L+G HDF++FR+ CQA SP++ + + Sbjct: 117 SQSPVRPSLDSGRVGWSMHPLDGDAMRKAAAVLIGTHDFSSFRASACQAKSPVKNLRRIE 176 Query: 177 VNSFGNLIEIR----VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + G+ R A +FLH IR+ +G L +G G + + L+A+ RK P Sbjct: 177 ITRVGDGERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEWIAEVLEARSRKVAAP 236 Query: 233 LAPPEGLYF 241 +GLYF Sbjct: 237 TFSADGLYF 245 >gi|227517362|ref|ZP_03947411.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] gi|227075232|gb|EEI13195.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] Length = 277 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 37 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 96 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 97 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 154 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 155 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERDGEML 214 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 215 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 274 Query: 245 EY 246 Y Sbjct: 275 YY 276 >gi|315173151|gb|EFU17168.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346] Length = 877 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 637 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 696 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 697 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 754 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 755 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGKML 814 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 815 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 874 Query: 245 EY 246 Y Sbjct: 875 YY 876 >gi|325567346|ref|ZP_08144013.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] gi|325158779|gb|EGC70925.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] Length = 248 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + +HG+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIHGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ ++ IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKSVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P LD E ++ A +G HDFT+F + RTI V Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRIAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLVHVAYE 248 >gi|256962868|ref|ZP_05567039.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|307274272|ref|ZP_07555473.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|256953364|gb|EEU69996.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|306509045|gb|EFM78114.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] Length = 246 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMERACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4] gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4] Length = 259 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 2/242 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G+ + G+QRQ ++QG +E+A+ +T E V GAGRTD+GVHA QV F Sbjct: 8 LKVAYDGTAFSGFQRQPGLRTVQGVLEEALARLTKETCQVKGAGRTDAGVHAEGQVVSFR 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L ALN L +++L + V +QFH R+ A+ + Y Y R L Sbjct: 68 TASSIPTPRLVPALNGLL--PPDVAVLAAAEVPEQFHPRYDAVSKVYRYTFFRRAVRCPL 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A +P+ LD E MR AA +L GRHDF F++ S +RT+ + G + Sbjct: 126 TRFYALHVPEPLDVERMREAAAYLGGRHDFRAFQNTGRPVKSSVRTVFSCRLEEAGPFLY 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + A FL+ +R G+L +G GK + + AL+ +R+ GP APP GL V+ Sbjct: 186 FWIEADGFLYQMVRVIAGTLLEIGRGKLEPSVILAALEKGERQLLGPTAPPHGLCLVQVK 245 Query: 246 YS 247 Y Sbjct: 246 YP 247 >gi|253682551|ref|ZP_04863348.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] gi|253562263|gb|EES91715.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] Length = 246 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+GS Y GWQ+QK+ ++Q +E+AI +T + G RTD+GVHA VA+F Sbjct: 7 LIIEYDGSNYSGWQKQKHSITVQQKVEEAISEITKTDTEIIGCSRTDAGVHARNFVANFI 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P A+N+ K+ I I S V FHARF + + Y+Y I+ R+ P + Sbjct: 67 TESSVPPSKFKYAINS--KLPKDIVIKKSSEVPLDFHARFHSKGKKYVYTILNREEPPTI 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ + K LD M++A+++ +G H+F +F + S +RTI + DV ++I Sbjct: 125 DRNVMYHFNKDLDVNAMKMASKYFIGSHEFDSFYKKSGSSVKSTLRTIYYCDVTKCEDVI 184 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V+ FL+ +R G+L G G+ D++ + A+DR++ G PP+GL V Sbjct: 185 KFTVIGEGFLYNMVRIMAGTLIEAGIGRIRPEDIKAIILAKDREKAGRSLPPQGLCLQEV 244 Query: 245 EY 246 Y Sbjct: 245 LY 246 >gi|229546930|ref|ZP_04435655.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|229550518|ref|ZP_04439243.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|255971742|ref|ZP_05422328.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|255974742|ref|ZP_05425328.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256618347|ref|ZP_05475193.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|257081530|ref|ZP_05575891.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|257417608|ref|ZP_05594602.1| tRNA pseudouridine synthase [Enterococcus faecalis AR01/DG] gi|257421532|ref|ZP_05598522.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|307276430|ref|ZP_07557553.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|307278640|ref|ZP_07559710.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|312952641|ref|ZP_07771505.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|229304375|gb|EEN70371.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|229307858|gb|EEN73845.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255962760|gb|EET95236.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|255967614|gb|EET98236.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256597874|gb|EEU17050.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|256989560|gb|EEU76862.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|257159436|gb|EEU89396.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG] gi|257163356|gb|EEU93316.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|306504700|gb|EFM73900.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|306506910|gb|EFM76057.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|310629429|gb|EFQ12712.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|315026801|gb|EFT38733.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137] gi|315147137|gb|EFT91153.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244] gi|315153575|gb|EFT97591.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031] gi|315156245|gb|EFU00262.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043] gi|315158610|gb|EFU02627.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312] gi|315168134|gb|EFU12151.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341] gi|315171426|gb|EFU15443.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342] gi|323479455|gb|ADX78894.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62] gi|327534038|gb|AEA92872.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF] Length = 249 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|254931132|ref|ZP_05264491.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262] gi|293582680|gb|EFF94712.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262] gi|328469771|gb|EGF40688.1| tRNA pseudouridine synthase A [Listeria monocytogenes 220] gi|332313028|gb|EGJ26123.1| tRNA pseudouridine synthase A 1 [Listeria monocytogenes str. Scott A] Length = 248 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 132/252 (52%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRIKASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G + + D+ +AL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQDRISPDDISEALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEYS 247 P+GLY V+Y Sbjct: 237 PQGLYLWRVDYE 248 >gi|260558318|ref|ZP_05830514.1| tRNA pseudouridine synthase [Enterococcus faecium C68] gi|261207023|ref|ZP_05921712.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289565342|ref|ZP_06445792.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|294615363|ref|ZP_06695236.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|294618289|ref|ZP_06697870.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|260075492|gb|EEW63798.1| tRNA pseudouridine synthase [Enterococcus faecium C68] gi|260078651|gb|EEW66353.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289162832|gb|EFD10682.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|291591737|gb|EFF23373.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|291595383|gb|EFF26695.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] Length = 248 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDV 177 + + A P LD E ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|333029910|ref|ZP_08457971.1| tRNA pseudouridine synthase A [Bacteroides coprosuis DSM 18011] gi|332740507|gb|EGJ70989.1| tRNA pseudouridine synthase A [Bacteroides coprosuis DSM 18011] Length = 260 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 5/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+GS Y GWQ Q NGSS+Q + A+ + + + V GAGRTD+GVHA + +A Sbjct: 13 RYFIYLSYDGSNYHGWQIQPNGSSVQECLMDALKMFLRKEIEVVGAGRTDAGVHAKQMIA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD R+ +C LN L I+I + V+K+ HARF A R+Y Y I TR+ P Sbjct: 73 HFDFERKLDVDKVCDKLNRIL--PHDIAIHKVIEVNKEAHARFDATARTYQYYITTRKDP 130 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG- 181 + A+ + +SLD M AAQ L DFT+F +H + + TI + Sbjct: 131 --FRRNYAYRLYQSLDILKMNEAAQILFEFEDFTSFSKLHSDTRTNLCTIMQAEWTEVDE 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L VG GK + + K ++ QDR G P + L+ Sbjct: 189 HTLVFTIQANRFLRNMVRAIVGTLIEVGRGKISLEEFRKIIEEQDRGLAGASVPGQALFL 248 Query: 242 DSVEY 246 +VEY Sbjct: 249 IAVEY 253 >gi|256960635|ref|ZP_05564806.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|293382724|ref|ZP_06628649.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|293388093|ref|ZP_06632621.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|312908619|ref|ZP_07767561.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|312909233|ref|ZP_07768090.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|256951131|gb|EEU67763.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|291079884|gb|EFE17248.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|291082544|gb|EFE19507.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|310625406|gb|EFQ08689.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|311290475|gb|EFQ69031.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] Length = 249 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NKTGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|315154834|gb|EFT98850.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043] Length = 277 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 37 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARGQVANF 96 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 97 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 154 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 155 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 214 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 215 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 274 Query: 245 EY 246 Y Sbjct: 275 YY 276 >gi|257885664|ref|ZP_05665317.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|293553909|ref|ZP_06674515.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] gi|257821520|gb|EEV48650.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|291601961|gb|EFF32207.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] Length = 248 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDV 177 + + A P LD E ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|294666793|ref|ZP_06732027.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603454|gb|EFF46871.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 257 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 135/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ FHARFSA R Y Y Sbjct: 61 QVVHFDSDARREPRGWM-------LGTTARLPPSIAVRWCVPAADDFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTLSWERRPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V FG ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP A Sbjct: 174 IHVQRFGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|227555887|ref|ZP_03985934.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|256964165|ref|ZP_05568336.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|257418666|ref|ZP_05595660.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|307274205|ref|ZP_07555413.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|227175054|gb|EEI56026.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|256954661|gb|EEU71293.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|257160494|gb|EEU90454.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|306509167|gb|EFM78229.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|315573548|gb|EFU85739.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B] gi|315582104|gb|EFU94295.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A] Length = 249 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|257876163|ref|ZP_05655816.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|257810329|gb|EEV39149.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] Length = 248 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + +HG+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIHGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ + IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKAVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P LD E ++ A +G HDFT+F + RTI V Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLVHVAYE 248 >gi|257084178|ref|ZP_05578539.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] gi|256992208|gb|EEU79510.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] Length = 249 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|256958303|ref|ZP_05562474.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|257078388|ref|ZP_05572749.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|257420509|ref|ZP_05597499.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|294780153|ref|ZP_06745525.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|307268416|ref|ZP_07549794.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|256948799|gb|EEU65431.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|256986418|gb|EEU73720.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|257162333|gb|EEU92293.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|294452696|gb|EFG21126.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|306515223|gb|EFM83760.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|315036592|gb|EFT48524.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027] gi|329575477|gb|EGG57017.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467] Length = 246 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ G AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|322418344|ref|YP_004197567.1| tRNA pseudouridine synthase A [Geobacter sp. M18] gi|320124731|gb|ADW12291.1| tRNA pseudouridine synthase A [Geobacter sp. M18] Length = 250 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 121/241 (50%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ Y GWQ Q NG ++Q +E A+ + GE +H +GRTD+GVHA VA F Sbjct: 6 LIIEYDGTAYSGWQVQPNGVTVQAVMEDALSRMLGERTPLHASGRTDAGVHARGMVACFK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + LN L SD I++ + V FH RF A + Y Y ++ L Sbjct: 66 TGKTMPLRAFREGLNTLLP-SD-IAVREAAEVPLGFHPRFDAQAKHYRYTMLLDDLRSPL 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + AW I LD E MR A VG HDF FR +C A + +R I ++ L+ Sbjct: 124 SRHTAWRIKGKLDLEAMRAACTVFVGEHDFAAFRGANCAAKTTVRRIYSMELVQEDRLLH 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + FL +R G+L VG G+ + D+ + L+ DR+ G PP+GL V Sbjct: 184 LDIKGSGFLKNMVRIITGTLVDVGQGRLGAADVARLLKGGDRQNAGMTVPPQGLCLMRVF 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|220930998|ref|YP_002507906.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|220931093|ref|YP_002508001.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|219992308|gb|ACL68911.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|219992403|gb|ACL69006.1| pseudouridylate synthase I [Halothermothrix orenii H 168] Length = 246 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 130/243 (53%), Gaps = 5/243 (2%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + +EY+G+ Y GWQ Q N +IQG + K +F + V + GA RTD+GVHA QVA+F Sbjct: 7 ITVEYDGTNYSGWQIQNNTPETIQGVLSKCLFDINKSPVKLIGASRTDAGVHARGQVANF 66 Query: 65 DLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 L + +PV + ALN+ K+ I + V + FHARF A + Y+YRI+ + P Sbjct: 67 RL-KVGIPVERIPLALNS--KLPPDIVCKDAEEVTEDFHARFDARGKRYIYRILNSEYPS 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + + IP +L+ + MR A L+G HDF +F++ + +RTI D+ Sbjct: 124 PFLRNYTYFIPHNLNIDKMREAGSLLIGEHDFASFQASGGSNKTTVRTITKLDIYRDQYQ 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I+I V FL+ +R G+L VG GK T + + L+ +DR G APP GL Sbjct: 184 IKIEVCGNGFLYKMVRIIAGTLIEVGLGKRTVKSVGQLLEIKDRDRAGFTAPPRGLTLIE 243 Query: 244 VEY 246 V Y Sbjct: 244 VFY 246 >gi|329894995|ref|ZP_08270775.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC3088] gi|328922563|gb|EGG29899.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC3088] Length = 274 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 132/248 (53%), Gaps = 15/248 (6%) Query: 6 MIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + +EYNGS + GWQRQ ++Q ++E A+ + V V AGRTDSGVHA QV F Sbjct: 16 LAVEYNGSLFHGWQRQGGTDQTVQATLEAALSQIANHDVRVACAGRTDSGVHATSQVVSF 75 Query: 65 DLVREWVPVILCKALNAYLKISD-----TISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 PV ++L A++ S+ T+ + V +FHARFSAI+R+Y Y + Sbjct: 76 K-----APV--SRSLKAWVVGSNAVLPPTVRVHWACAVPDEFHARFSAIQRTYRYVWCVQ 128 Query: 120 QA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P +L K W +L + M AAQ L+G DF+ FR+ CQ+++P R + V Sbjct: 129 EVRPTSLLKQVTWSR-NALCSQTMNEAAQSLLGEQDFSAFRAASCQSNTPFREVQAVSVV 187 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + + A +FLH +R+ GSL LVG G + + LQ +DR A P+G Sbjct: 188 GRGPFVVMEIRANAFLHHMVRNIAGSLSLVGRGLKPVDWIAQLLQGKDRTVAADTASPDG 247 Query: 239 LYFDSVEY 246 LY SV Y Sbjct: 248 LYLTSVAY 255 >gi|242277723|ref|YP_002989852.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638] gi|259550311|sp|C6BW69|TRUA_DESAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|242120617|gb|ACS78313.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638] Length = 271 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 133/250 (53%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ + GWQ Q ++QG +EKAI +TG V VHG+GRTDSGVHAL Q Sbjct: 1 MQRIKLIIAYDGTNFCGWQLQPKLRTVQGDLEKAITRITGTTVRVHGSGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI-ITR 119 VAHFD+ + V +ALN+ L D ++IL+ +V +FH+R+SAIR++Y Y + + Sbjct: 61 VAHFDVDSCFASVKWQRALNSLL--PDDVTILDAQLVSPEFHSRYSAIRKTYTYTLWLEN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + W LD + Q+ +G HDF++F++ + S +RTI F Sbjct: 119 SFFLPWRRHYVWKC-GPLDFCALDQGMQYFLGEHDFSSFQNTGTEIKSTVRTIHEFKRYP 177 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + V FL +R+ VG L +G GK + LQ +DR AP + Sbjct: 178 GQTEQEMILEVCGSGFLKQMVRNMVGCLVRIGRGKAEPETVRSLLQMKDRTAAPATAPAQ 237 Query: 238 GLYFDSVEYS 247 GL V Y Sbjct: 238 GLCMAGVYYG 247 >gi|291549528|emb|CBL25790.1| pseudouridylate synthase I [Ruminococcus torques L2-14] Length = 256 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q +I+G + +AI +T E ++V GA RTD+GVHA Sbjct: 1 MRRIRLRVAYDGTAYCGWQVQPEVPTIEGELNQAISRLTKEEIIVIGASRTDAGVHAKGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I ++ V+ +H R ++Y Y+I+ + Sbjct: 61 VAVFDTESTIPADRFAYALNPLL--PEDIVVVASDEVEADWHPRHCDTEKTYEYKILNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + L+ E MR AA++L G HDF +F ++H Q +RTI +V Sbjct: 119 FPDPMRRRDTYHVSFDLNLEKMREAAEYLKGEHDFKSFCNVHTQVEDTVRTIYDLEVEKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI IRV FL+ +R G+L VG G + L+A+DR+ G PP+GL Sbjct: 179 EELITIRVRGNGFLYNMVRILAGTLIGVGRGAIAPEQIPAILEAKDRQAAGMTVPPQGLT 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LVKIDY 244 >gi|145588955|ref|YP_001155552.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|226708658|sp|A4SWX4|TRUA_POLSQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145047361|gb|ABP33988.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 275 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 143/259 (55%), Gaps = 21/259 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHG--AGRTDSGVH 56 +R + ++Y+GS Y GWQ Q + +IQ +EKA+ GE VH AGRTD+GVH Sbjct: 1 MRIALGLQYDGSPYAGWQTQLHQPTIQDELEKALTAFIGEEAKAFPVHTITAGRTDTGVH 60 Query: 57 ALRQVAHFD--LVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 AL QV HFD + RE WV + +N +L S ++ V ++F ARFSA R+ Sbjct: 61 ALGQVVHFDTNVGREDFSWV-----RGVNTFLPKSIVVNWAKE--VPEEFSARFSAYERT 113 Query: 112 YLYRIITR--QAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y+Y + ++P+ + ++P LD E M+ +A+ L+G HDF++FRS CQ+ + Sbjct: 114 YIYALHAGPCRSPIVNARAGYLMLPPDQFLDVEAMKKSAECLIGEHDFSSFRSSECQSKT 173 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 P++TI D+ S + R+ +FLH IR+ VG +G G+ S + + L A++R Sbjct: 174 PVKTIYAIDIISQEPWVYFRIRGNAFLHHMIRNIVGCFLQIGQGRQQSGWMAEVLTAKNR 233 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P +GLY ++Y Sbjct: 234 QIAAPTFMADGLYLAKIKY 252 >gi|238855099|ref|ZP_04645427.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 269-3] gi|260664884|ref|ZP_05865735.1| tRNA pseudouridine synthase A [Lactobacillus jensenii SJ-7A-US] gi|282931908|ref|ZP_06337380.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] gi|238832343|gb|EEQ24652.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 269-3] gi|260561367|gb|EEX27340.1| tRNA pseudouridine synthase A [Lactobacillus jensenii SJ-7A-US] gi|281303960|gb|EFA96090.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] Length = 262 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 135/253 (53%), Gaps = 10/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMSKGKRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P + ALN+ + I SIVD+ FH ++S + YR I Sbjct: 61 QVIHFDFPNDNIPANKMVLALNSMMPTD--IVFKEASIVDESFHVQYST--KGKWYRYIV 116 Query: 119 RQAPLALEKGRAWL--IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 Q R + P LD M+ AA L+G HDFT+F + Q +RTI + Sbjct: 117 NQDRFVDPFKRFYTGHYPYKLDVSKMQEAASDLLGEHDFTSFAASGGQIIDKVRTIFYVK 176 Query: 177 V--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + N I + FL+ +R VG+L +G+G+ DLE+ + A+DR+E A Sbjct: 177 IWQKPEENEIVFDFIGNGFLYNMVRIMVGALLEIGNGRRPIHDLERVILAKDRQEVRNTA 236 Query: 235 PPEGLYFDSVEYS 247 P GLY V Y Sbjct: 237 PASGLYLYHVFYE 249 >gi|15644322|ref|NP_229374.1| tRNA pseudouridine synthase ACD [Thermotoga maritima MSB8] gi|8134772|sp|Q9X1R0|TRUA_THEMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4982143|gb|AAD36641.1|AE001802_10 pseudouridylate synthase I [Thermotoga maritima MSB8] Length = 245 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + + A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIRNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR A ++L G HDFT+F++ P+RTI + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAVKYLEGTHDFTSFKT-GSDERDPVRTIYRIRILR 177 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP G Sbjct: 178 LKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|315221272|ref|ZP_07863195.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211] gi|315189631|gb|EFU23323.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211] Length = 249 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 132/252 (52%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + +G VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHGFAGFQRQLHARSVQEEIEKTLTKINSGASVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V++ FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDGEKLRFALDT--QTPEDIDFISVEEVNEAFHSRYCKHSKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH----F 175 + + + A P LD + A + L G HDFT F + + IRTI F Sbjct: 119 RPKNPMMRYYATHYPYPLDLSLIEEAIEKLEGTHDFTGFTASGTSVENKIRTITEARLVF 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D N + FL+ QIR+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DEKR--NFLMFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKDRHLAGPTAA 236 Query: 236 PEGLYFDSVEYS 247 P GLY + Y Sbjct: 237 PNGLYLKEIRYE 248 >gi|315172660|gb|EFU16677.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346] Length = 249 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NEKGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|298530329|ref|ZP_07017731.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans ASO3-1] gi|298509703|gb|EFI33607.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans ASO3-1] Length = 247 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+GY GWQ QK+G +IQG +EKA+ + + VHG+GRTD+GVHAL QV Sbjct: 3 MRVRLTLAYDGTGYNGWQIQKDGLTIQGELEKALSRICSASIRVHGSGRTDAGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +++ V +ALNA L I +L+ + D++FHARFSA + Y Y + T+ A Sbjct: 63 AHFDPPPKFLNVPWNRALNAVLPPG--IRVLDFARTDRKFHARFSARAKQYSYTLWTQGA 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++ LD E M+ A L G HDF F + + + IRT+ + + Sbjct: 121 FFYPQRRNFVWNTGPLDLEAMQEATTCLTGSHDFNCFMNKGTEITDTIRTVRNILLAPGF 180 Query: 182 NLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 E + + A FL R+ V +L VG K + +L+ +Q +DR AP GL Sbjct: 181 TPQETVVWIQADGFLKQMARNIVSALVQVGRKKLSQAELKSIIQGRDRALAPATAPARGL 240 Query: 240 YFDSVEY 246 + V Y Sbjct: 241 CLEHVTY 247 >gi|219684777|ref|ZP_03539719.1| tRNA pseudouridine synthase A [Borrelia garinii PBr] gi|219671722|gb|EED28777.1| tRNA pseudouridine synthase A [Borrelia garinii PBr] Length = 246 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 123/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQIITFDIN 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + + I IL L V FH RF+A +R Y YRI+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNGIKILKLKYVKNSFHPRFNAQKRKYSYRILNSNNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L+ N+ A+ L+G HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ D V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESVSTFETILKSKNRNFARTTAPANALFLDKVYY 245 >gi|291296648|ref|YP_003508046.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279] gi|290471607|gb|ADD29026.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279] Length = 263 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 128/249 (51%), Gaps = 9/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY+GSG+ G Q Q G ++Q +E A+ + G + GRTD+GVHAL Sbjct: 14 RILLTLEYDGSGFAGLQTQAQGERTVQQELEAALSQIPGARPKIWPCGRTDAGVHALAMP 73 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H+D + + ALN L I L V FHAR S R Y YRI+ R+ Sbjct: 74 VHYDTLDNIPTEKIPHALNTLL--PPDIRALAAQEVPADFHARKSCHWREYRYRILQRRM 131 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDV-- 177 P AL++ R W IP SL+ MR A + LVG HDF F +A+ +R I H +V Sbjct: 132 PPALDRHRVWWIPHSLNLIPMRHALECLVGTHDFKAFAVKEERAT--VREIYRAHLEVWP 189 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G I I V FL Q+RS VG+L +G GK S+ ++ L + RK+ GP AP + Sbjct: 190 TEGGREIWIEFVGSGFLRGQVRSMVGTLVEIGLGKRDSSSIQSLLASGSRKDAGPTAPAQ 249 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 250 GLYFVRAGY 258 >gi|255654196|ref|ZP_05399605.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-23m63] gi|296449765|ref|ZP_06891534.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296877828|ref|ZP_06901851.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] gi|296261363|gb|EFH08189.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296431170|gb|EFH16994.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] Length = 243 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 134/245 (54%), Gaps = 11/245 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF- 64 + I+YNG Y GWQ+Q + IQG+IE+AI+ +T E V + G+GRTDSGVHA+ Q+A+F Sbjct: 6 ITIQYNGKNYCGWQKQLDSLGIQGTIERAIYDITKEKVSLIGSGRTDSGVHAIGQIANFK 65 Query: 65 ---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + E +P+ ALNA K+ IS+++ V+ FH+R+SA ++Y Y + + Sbjct: 66 TNSSISIESIPM----ALNA--KLPKDISVIDACEVNDDFHSRYSAKGKTYKYLVYNSKF 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++ + LD + M A+ L+G HDF F S +RTI D+ Sbjct: 120 RNPILSEISYQVKYELDFDKMCSEAKLLLGTHDFKGFMSSGSSVKDTVRTIYDIDIIRKD 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LI + FL+ +R VG+L +G G+ L+ +Q++ R CG AP +GL+ Sbjct: 180 DLITFEISGNGFLYNMVRIIVGTLVDIGRGRINEPFLD-IIQSKTRSRCGHTAPAQGLFL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 KKVHY 243 >gi|319938474|ref|ZP_08012868.1| pseudouridylate synthase [Coprobacillus sp. 29_1] gi|319806390|gb|EFW03057.1| pseudouridylate synthase [Coprobacillus sp. 29_1] Length = 244 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 136/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G+Q Q ++QG I+KA+ + E V++H +GRTD+ VHA+ QV Sbjct: 1 MRVKCVVSYDGSRFHGFQVQDKERTVQGEIQKALKKINEEEVIIHASGRTDAKVHAVHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ P +A+N ++ + I IL+ S D +FH+R+SAI++ Y Y + T++ Sbjct: 61 FHFDTKKDLPPQQWKRAINHFM--PNDIYILDASYTDDEFHSRYSAIKKEYRYLLSTKEY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + + LD E MR A+Q +G H+F +F S + Q + IRT+ FD+ Sbjct: 119 N-PFDTNYVFQYGRQLDIELMREASQIFIGEHNFASFCS-YDQYGNTIRTLYTFDIVEED 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I R++ F +R VG + VG + + L + L++ K+C A P+GLY Sbjct: 177 GIITFRLIGNGFRRYMVRHLVGGIIQVGAKRISKEILSEMLESCGTKKCLFKAKPQGLYL 236 Query: 242 DSVEYS 247 V Y Sbjct: 237 QEVYYE 242 >gi|310823108|ref|YP_003955466.1| tRNA pseudouridine synthase a [Stigmatella aurantiaca DW4/3-1] gi|309396180|gb|ADO73639.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 265 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+GS Y GWQ Q+NG S+Q + +A+ + G V V AGRTDSGVHA Q Sbjct: 1 MPRLKLTIEYDGSRYVGWQVQRNGRSVQAELGEALGRLLGGDVEVVAAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD R+ + LN L + I+++ V F R + + Y YR+ Sbjct: 61 VVCFDTERQLPLKAYHRGLNGLLP--EDIAVVRAEEVSAAFDPRRWSRGKRYRYRVSNLP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 + L + W I L E M AA L+GRHD++ FR+ CQA+ +R + V + Sbjct: 119 SRSPLRRHTHWEIYAPLQVEAMARAATSLLGRHDYSAFRASDCQAAHAVREVRRLSVEGT 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + V +FL +R+ VG+L VG G+ + + L + DR GP APP GL Sbjct: 179 PGDAVAFVVEGTAFLKHMVRNLVGTLVEVGKGRRPEAWVAEVLASGDRTLAGPTAPPHGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 VLEEVFY 245 >gi|167855019|ref|ZP_02477793.1| ribonuclease G [Haemophilus parasuis 29755] gi|167853867|gb|EDS25107.1| ribonuclease G [Haemophilus parasuis 29755] Length = 262 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 132/252 (52%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+G Y GWQRQ+ S+Q +E+A+ ++ V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGRRYCGWQRQQYVDSVQQRLEEALSVIANSSCEVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD C NA+L D + + + D FHARFSA+ R Y Y I Sbjct: 61 VHFDTDVNRPMQSWCLGTNAHLP-EDIVVKWAIGVSD-DFHARFSALARRYRYVIYN--- 115 Query: 122 PLALEKGRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 K R+ ++PK SLD E M A Q L+G +DF++FR+ CQ+ +P R + H Sbjct: 116 ----NKLRSAILPKGISHYHYSLDHEKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHH 171 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V+ + I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A Sbjct: 172 LIVSRHQDYIILDIQANAFVHHMVRNIVGSLIEVGRGDKPVEWIKWLLEKRDRTLAAPTA 231 Query: 235 PPEGLYFDSVEY 246 EGLY V Y Sbjct: 232 KAEGLYLVEVIY 243 >gi|227520026|ref|ZP_03950075.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] gi|227072574|gb|EEI10537.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] Length = 249 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|256830021|ref|YP_003158749.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028] gi|256579197|gb|ACU90333.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028] Length = 246 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 128/249 (51%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ Y GWQ Q G +IQG+IE + + GE+V VHG+GRTDSGVHAL Q Sbjct: 1 MPRIRLTVAYVGTRYQGWQIQGRGETIQGAIEDKLARICGELVRVHGSGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ + +ALNA L D ISIL FHARFS + Y Y + T + Sbjct: 61 VAHFDVPESKRHIPWRQALNAML--PDDISILEAREAQDDFHARFSVRSKRYAYTLWT-E 117 Query: 121 APLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ P + LD E M AA+ L G HDF F++ + +RT++ Sbjct: 118 PRFTMPQRAPFVWPVRGLDFEAMDQAAEVLAGTHDFAAFQNAGTEIKGTVRTLEPIVRAP 177 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + E R A FL +R+ +G L VG G D+ L+ DR++ AP Sbjct: 178 GTHSAEWVFRFQADGFLKQMVRNLMGLLVEVGRGGLAPADVRPILEGCDRRKAPATAPAR 237 Query: 238 GLYFDSVEY 246 GL + V Y Sbjct: 238 GLTLEEVMY 246 >gi|154249373|ref|YP_001410198.1| tRNA pseudouridine synthase ACD [Fervidobacterium nodosum Rt17-B1] gi|171769414|sp|A7HKV8|TRUA_FERNB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154153309|gb|ABS60541.1| tRNA pseudouridine synthase A [Fervidobacterium nodosum Rt17-B1] Length = 246 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + Y+G+ +FG+Q Q N ++QG +EKA+ V + + AGRTD+GVHA Q Sbjct: 1 MRRVAIEFSYDGTDFFGYQIQNNVRTVQGELEKALEKVFKIHIDTYAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V FD + + + A+NA L I I + F+ R+ A RR Y Y I T Sbjct: 61 VVSFDCPNDRLMENDIKNAINANL--PGDIYIKKVWFTHPTFNPRYEAKRRIYHYYIDTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ + W P LD E MRIAA++L+G HDF +F + + IRTI++ + Sbjct: 119 KSKNLFTRRYVWWFPYELDIEKMRIAAKYLIGEHDFISFSKKGEENTKTIRTINNLRIIE 178 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N LI IRV SFL +RS V +L VG G W +++ L+++DR + LAP G Sbjct: 179 IKNGLILIRVEGISFLRGMVRSIVANLVRVGTGIWEPEKVKEVLESKDRSKSAGLAPAHG 238 Query: 239 LYFDSV 244 L+ V Sbjct: 239 LFLYKV 244 >gi|28212149|ref|NP_783093.1| tRNA pseudouridine synthase A [Clostridium tetani E88] gi|38258761|sp|Q890R5|TRUA2_CLOTE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|28204593|gb|AAO37030.1| tRNA pseudouridine synthase A [Clostridium tetani E88] Length = 248 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 4/242 (1%) Query: 8 IEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +EY+G+ Y GWQ+QK N +IQ SIEKAI T E V + G+ RTD+GVHAL A+F Sbjct: 9 VEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEATKEEVELIGSSRTDAGVHALAYTANFK 68 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALN +L + I IL V +FH+RF I ++Y+Y+I+ R + Sbjct: 69 TCSTIPGEKFKHALNRFL--PEDIVILESEEVPMEFHSRFDCIGKTYVYKILNRPLFSPI 126 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 ++ + + LD +M A++ L+G HDF F+ + +RTI + ++ +++E Sbjct: 127 QRNYIYHVKDELDINSMIEASKFLIGTHDFNAFKKSGGNLKTTVRTITNINILKSNDIVE 186 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V FL+ +R G+L VG + D+ LQ++DR + G AP GLY + Sbjct: 187 IHVSGDGFLYNMVRIISGTLIEVGLSRRKPEDISIILQSKDRCKAGMCAPARGLYLKELF 246 Query: 246 YS 247 Y+ Sbjct: 247 YN 248 >gi|325660678|ref|ZP_08149308.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] gi|325473039|gb|EGC76247.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] Length = 249 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 124/244 (50%), Gaps = 5/244 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y M I Y+G GY GWQR N +IQG+IE+ + + G V + G+GRTD+GVHA QVA Sbjct: 9 YKMTIAYDGGGYKGWQRLTNEPGTIQGTIERVLSEIEGSPVKISGSGRTDAGVHAKGQVA 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H L P +L + LN L + I I + V + FH+R+SA+ + Y YRI R Sbjct: 69 HVFLKTNEDPELLRQELNRML--PEDIRICRVESVSQSFHSRYSAVSKVYEYRIDQRSRA 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + P LD + MR AA HL G HDF +F + + +RTI D+ Sbjct: 127 DVFTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSFTD--NKEADSVRTIFSIDMKEENE 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + FL+ +R G+L VG+G T + +A +DR G LAP GL Sbjct: 185 KLVLAFCGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDRSLTGFLAPAHGLCLR 244 Query: 243 SVEY 246 V Y Sbjct: 245 EVNY 248 >gi|219870357|ref|YP_002474732.1| tRNA pseudouridine synthase A [Haemophilus parasuis SH0165] gi|254789638|sp|B8F382|TRUA_HAEPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219690561|gb|ACL31784.1| tRNA pseudouridine synthase A [Haemophilus parasuis SH0165] Length = 262 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 16/246 (6%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IEY+G Y GWQRQ+ S+Q +E+A+ ++ V AGRTD+GVHA QV HFD Sbjct: 7 IEYDGCRYCGWQRQQYVDSVQQRLEEALSVIANSSCEVFCAGRTDAGVHATGQVVHFDTD 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 C NA+L D + + + D FHARFSA+ R Y Y I K Sbjct: 67 VNRPMQSWCLGTNAHLP-EDIVVKWAIGVSD-DFHARFSALARRYRYVIYN-------NK 117 Query: 128 GRAWLIPK-------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 R+ ++PK SLD E M A Q L+G +DF++FR+ CQ+ +P R + H V+ Sbjct: 118 LRSAILPKGISHYHYSLDHEKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLIVSRH 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 178 QDYIILDIQANAFVHHMVRNIVGSLIEVGRGDKPVEWIKWLLEKRDRTLAAPTAKAEGLY 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LVEVIY 243 >gi|293572050|ref|ZP_06683062.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|291607912|gb|EFF37222.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] Length = 246 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + +N YL I I + + ++FHAR++A+ + Y Y + P A Sbjct: 66 KTNSEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNNVIPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + G ++ Sbjct: 124 FERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIERKGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 V FL+ +R +G+L +G +++ +++ R+ G P +GL+ D V Sbjct: 184 HFTFVGDGFLYKMVRIIMGTLLEIGTSAMPIETIDEIFESKVRQHAGETVPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|313672355|ref|YP_004050466.1| tRNA pseudouridine synthase a [Calditerrivibrio nitroreducens DSM 19672] gi|312939111|gb|ADR18303.1| tRNA pseudouridine synthase A [Calditerrivibrio nitroreducens DSM 19672] Length = 248 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 130/239 (54%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 +EY+G+ + GWQ QK ++Q IE A+ + + + + G+GRTD+GVHAL QV +F Sbjct: 12 VEYDGTEFHGWQFQKGLVTVQSEIEAALSKIYKKQIHIIGSGRTDAGVHALAQVFNFRAE 71 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + L LN+ L S I I + VD FHA+ SA ++YLY+I+ + P A + Sbjct: 72 KYIESEPLNLGLNSLLPRS--IIIKKVEDVDVNFHAQKSAKSKTYLYKILNSELPSAFLR 129 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 R W + S+D E VG DF+ ++ + +RTI+ +V ++I I Sbjct: 130 NRVWWVRNSIDIEIFSEILSQFVGTFDFSAMCTMKSLKENSVRTINFINVYKTEHIINIE 189 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FLH +R+ +G+ + K + + + ++++DRK+ GP APP+GLY V Y Sbjct: 190 INANGFLHNMVRNIIGTAFFIYRKKLHPSTVMEIIESRDRKKGGPTAPPQGLYLKEVFY 248 >gi|219685340|ref|ZP_03540159.1| tRNA pseudouridine synthase A [Borrelia garinii Far04] gi|219673113|gb|EED30133.1| tRNA pseudouridine synthase A [Borrelia garinii Far04] Length = 246 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q+ FD+ Sbjct: 8 IAYEGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQIITFDIN 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALN+ L + ++I IL L V FH RF+A +R Y YRI+ E Sbjct: 68 INIQLNNLKKALNSIL-LKNSIKILKLKYVKNSFHPRFNAQKRKYSYRILNSNNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L+ N+ A+ L+G HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ D V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESVSTFETILKSKNRNLARTTAPANALFLDKVYY 245 >gi|154502979|ref|ZP_02040039.1| hypothetical protein RUMGNA_00801 [Ruminococcus gnavus ATCC 29149] gi|153796518|gb|EDN78938.1| hypothetical protein RUMGNA_00801 [Ruminococcus gnavus ATCC 29149] Length = 244 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 126/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ N +IQG +E+A G V V G+GRTD GVHA Sbjct: 1 MRTYKLTIAYDGSRYQGWQRQSNTDKTIQGLLEQAASEAAGYPVEVQGSGRTDGGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + +N L + I ++ + +V FHAR SA+ + Y Y I R Sbjct: 61 QTASVILRGKVQESEFLQNMNRLLPLD--IRVIEMELVKNGFHARLSAVGKCYEYWIDMR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + PK L+ E M+ AA L+GR+DF F + + S IRTI V Sbjct: 119 EKPDVFMRKYTYHYPKELNIEAMQRAADDLIGRYDFAAF-TDKKEEKSTIRTIYAIIVEV 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I F++ +R G+L VGDG+ T ++ AL +DR + G LAP GL Sbjct: 178 QGDKLRIEYRGSGFMYHMVRILTGTLLEVGDGRRTPESVKAALAGRDRADAGFLAPARGL 237 Query: 240 YFDSVEY 246 V Y Sbjct: 238 TLKEVYY 244 >gi|326559413|gb|EGE09838.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1] gi|326564997|gb|EGE15197.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1] gi|326566051|gb|EGE16211.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1] gi|326572448|gb|EGE22440.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8] gi|326572505|gb|EGE22494.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72] gi|326574101|gb|EGE24049.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1] gi|326576065|gb|EGE25984.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E] Length = 268 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IE+ G+ Y GWQRQ+ +Q IEKA+ + E + + AGRTD+GVHA +AHF Sbjct: 10 IEFIGTRYRGWQRQEEVIGVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAHFVTH 69 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 E + N+ L D I++ + + FHARFSAI R Y Y + + A+ + Sbjct: 70 AERSAHSWLRGTNSLLP--DDIALRWVQPMPDDFHARFSAIARRYRYITLNQPYRPAILR 127 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + LD + M IA+Q +VG HDF++FR+ CQ++ P+RT+ H ++ G+ + + Sbjct: 128 HQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVTHANLFQHGSYLILD 187 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FLH +R+ +G+L VG G+ + + + A++R P A +GLYF + Y Sbjct: 188 IQADGFLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTLAPPTASADGLYFINAYY 246 >gi|315151105|gb|EFT95121.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012] Length = 249 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLAEVRYE 248 >gi|291557656|emb|CBL34773.1| pseudouridylate synthase I [Eubacterium siraeum V10Sc8a] Length = 243 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 126/248 (50%), Gaps = 18/248 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA V + V Sbjct: 1 MAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAFVFN---V 57 Query: 68 REWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P+ K NA L I+ L+ + FHARF + + Y+YRI T Sbjct: 58 KTTCPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYRIYTGDVRDV 115 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS------SPIRTIDHFDVN 178 A P D E MR AA+ +VG HDF +F C+A S +RT+ DV Sbjct: 116 FSADTALHYPYKPDIEKMRKAARLIVGEHDFASF----CKAEAKEHLLSTVRTVYSIDVE 171 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ +EI+V FLH +R VG+L + +GK T D+ AL DR+ G P G Sbjct: 172 QTGDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVSPCG 231 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 232 LYLNKVFY 239 >gi|239624119|ref|ZP_04667150.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522150|gb|EEQ62016.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 249 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y + + Y+G+ Y GWQ+Q N +IQG +E+ + + GE V V G+GRTD+GVHA Q Sbjct: 1 MNYIIWLSYDGTRYDGWQKQGNTEKTIQGKLERVLEKLDGEPVEVRGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F L + P + + LN YL + I++ + ++FH+R +A+R++Y Y+I Sbjct: 61 VADFQLKGKRAPEEVMEYLNRYL--PEDIAVWRIQTAPERFHSRLNAVRKTYRYQIELGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + LD +M A +L G DF +F S +RT++ Sbjct: 119 KKDVFRRSYYYGLGQELDVASMERAVAYLTGTRDFKSFCGNKKMKKSTVRTLESIRFERL 178 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + I FL +R G+L VG G+ D+ L+A DR+ G APPEGL Sbjct: 179 EDTRLHISFTGNGFLQQMVRILTGTLIEVGQGRRKPEDIRSILEALDRQAAGFTAPPEGL 238 Query: 240 YFDSVEYS 247 + + VEY Sbjct: 239 FLEKVEYG 246 >gi|71065963|ref|YP_264690.1| tRNA pseudouridine synthase A [Psychrobacter arcticus 273-4] gi|71038948|gb|AAZ19256.1| probable tRNA pseudouridine synthase [Psychrobacter arcticus 273-4] Length = 276 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 4/244 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IE+ G+ Y GWQRQ+ +Q ++E AI V E V V AGRTDS VHA +AHF Sbjct: 15 AIAIEFLGTHYHGWQRQREVLGVQQALETAISTVANEPVEVIAAGRTDSSVHASNMIAHF 74 Query: 65 DLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + + P + +N+ L D I++ + + FHARF+AI R Y Y + + Sbjct: 75 -VTHAYRPTHNWLRGVNSLLP--DDIALRWVQPMPADFHARFAAIARRYRYITLNQTQRP 131 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + I + LD + M++AA +VG HDF+++R+ CQ++ P+R I H ++ + G Sbjct: 132 AILNHQVTHIYEPLDLKAMQLAAADIVGTHDFSSYRAAACQSNQPVRHISHANLFTHGPF 191 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G + D L +DR P A +GLYF + Sbjct: 192 IVFDIQADGFLHHMVRNLMGTLYAIGRHELEPADFLNILAKKDRTIAPPTASGDGLYFIN 251 Query: 244 VEYS 247 Y Sbjct: 252 AYYP 255 >gi|51598275|ref|YP_072463.1| tRNA pseudouridine synthase A [Borrelia garinii PBi] gi|62901275|sp|Q663A0|TRUA_BORGA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|51572846|gb|AAU06871.1| pseudouridylate synthase I [Borrelia garinii PBi] Length = 246 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 124/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q+ FD+ Sbjct: 8 ITYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQIITFDIN 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L + FH RF+A +R Y YRI+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLKYMKNSFHPRFNAQKRKYSYRILNSNNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L+ N+ A+ L+G HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYLAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ D V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLDKVYY 245 >gi|258512640|ref|YP_003186074.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479366|gb|ACV59685.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 262 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 131/251 (52%), Gaps = 14/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R +++ Y+GSG+ G+ RQ+ ++QG +E + + G ++V G+GRTD GVHA QV Sbjct: 6 RIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDILVEGSGRTDRGVHARAQVV 65 Query: 63 HFDLVREWVPV------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFDL + P +L + L A L D VD+ FHARFS +R++Y Y + Sbjct: 66 HFDL--PYGPPADRMVHVLRRRLPADLLPRDA------GEVDEGFHARFSVVRKTYRYTL 117 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P +W P+ LD M+ AA+HL+G HDFT+F + + +R ID + Sbjct: 118 DLAPLPSLYWYRFSWHHPEPLDLAAMQEAARHLLGEHDFTSFCAAEARQRDKVRRIDRVE 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G+ + I FL +R VG+L VG G+ + L+A+DR+ G APP Sbjct: 178 FRQDGSRLHIEFEGNGFLQYMVRILVGTLVKVGRGQERPDRIPLILEARDRRLAGETAPP 237 Query: 237 EGLYFDSVEYS 247 GL +VEY Sbjct: 238 HGLCLWNVEYP 248 >gi|251799612|ref|YP_003014343.1| tRNA pseudouridine synthase A [Paenibacillus sp. JDR-2] gi|247547238|gb|ACT04257.1| tRNA pseudouridine synthase A [Paenibacillus sp. JDR-2] Length = 246 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 4/240 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ + G+Q Q G +IQ IE AI +TGE +++ G+GRTD+GVHA QV +F L Sbjct: 8 VSYDGTDFNGFQSQPYGRTIQQEIELAIKKLTGEDIIILGSGRTDAGVHANGQVFNF-LT 66 Query: 68 REWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 +P ALN ++ I IL V + FH+R SA R++Y Y I + P Sbjct: 67 ESTIPAERWAIALNT--RLPKDIVILEAHEVPEAFHSRRSAKRKTYRYTIDMGKFPDVFY 124 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + A+ P L+ E M+ LVG HDFT+F SIH +RTI + G ++ + Sbjct: 125 RRYAFHHPTPLNVEAMQKGLSFLVGEHDFTSFTSIHSTKPHHVRTIYEAYLEREGQMLHM 184 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + FL+ IR +G+L VG GK D+ + L+ + R GP A P GL VEY Sbjct: 185 YMTGNGFLYNMIRIVMGTLLHVGHGKLKPEDMARILEGRKRSLAGPTAMPHGLMLMKVEY 244 >gi|313636153|gb|EFS02014.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL S4-171] Length = 248 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R+ II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRFKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKALQVMTPFD--ISFLIVEEAPADFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P L+ E M++A++ LVG HDFT+F S + S +RT+ + ++ Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + D+ KAL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEYS 247 P+GLY V+Y Sbjct: 237 PQGLYLWRVDYE 248 >gi|114567807|ref|YP_754961.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317314|sp|Q0AUL4|TRUA_SYNWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114338742|gb|ABI69590.1| Pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 249 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++EY+GS Y G+Q QKN +++Q +EKAI+ ++GE + AGRTD+GVHA Q Sbjct: 1 MSRIKLLLEYDGSNYHGFQLQKNANTVQAELEKAIYRLSGERATIVCAGRTDAGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD ALN+ ++ + I +L +F+ RF A+++ Y Y I ++ Sbjct: 61 VVAFDSCSTIPGDRWAYALNS--QLPEDIQVLESQETRAEFNPRFDALKKCYGYLIYRQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + L E M+ AA+ L GR +F +F + A + R I H ++ Sbjct: 119 KKATFYRHYALCNTEPLKLEAMQEAAEILKGRQNFRSFCASGSSARTFEREIFHCRLSEK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A FL+ +R G+L VG GK+ L + + +QDR GP APP+GLY Sbjct: 179 GPCLLLHIAADGFLYNMVRIITGTLLEVGKGKYPPQHLREIIASQDRTRAGPTAPPQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLQVFY 244 >gi|58699741|ref|ZP_00374392.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58533741|gb|EAL58089.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 156 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 93/156 (59%) Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 +LN +VD FHARFSA +R Y YRI+ R AP ALE G W + LD MR AA+HL+ Sbjct: 1 MLNAEVVDDAFHARFSAKKRYYEYRIVNRYAPAALETGYVWQVFSPLDVNIMREAAKHLL 60 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 G+HD ++FRS C A++PIRTID D+ GN I I++ A SFLH Q+R G+L G Sbjct: 61 GKHDLSSFRSKDCHAANPIRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGK 120 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + ++ L R G APP GLY ++Y Sbjct: 121 NRTNPQEMLHILSQCKRSAAGVTAPPFGLYLVKIDY 156 >gi|169830466|ref|YP_001716448.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator MP104C] gi|238688213|sp|B1I1B5|TRUA_DESAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169637310|gb|ACA58816.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator MP104C] Length = 250 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 5/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y+G+ Y G+Q+Q +IQ ++E+ + ++G + V GA RTD+GVHA QV + Sbjct: 6 LTLAYDGTAYHGFQKQSGSGLPTIQETLERCLAELSGAALKVTGASRTDAGVHARGQVVN 65 Query: 64 FDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F R +P + ALN L I+ L+ V FHAR+SA+ ++Y Y + Sbjct: 66 FVTGRWGIPTERIPAALNGVLP--GDIAALDAREVPADFHARYSAVAKTYSYTLYNHPVR 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 ++ + +P++LD MR+AA+HL+GRHDF+TF++ S +RT+ D+ + Sbjct: 124 SPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRPVQSAVRTLTRADIEAQAP 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ + A FL+ +R G+L VG + L + + DR GP PP GL + Sbjct: 184 LVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDRARAGPTVPPHGLCLE 243 Query: 243 SVEY 246 VEY Sbjct: 244 EVEY 247 >gi|149926375|ref|ZP_01914636.1| tRNA pseudouridine synthase A [Limnobacter sp. MED105] gi|149824738|gb|EDM83952.1| tRNA pseudouridine synthase A [Limnobacter sp. MED105] Length = 254 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G + GWQ Q +G ++Q + KAI + E + + AGRTD+GVHA +Q Sbjct: 1 MNRVVLGLCYDGHEFEGWQTQPHGRTVQDYLTKAIEAIAQEPIALTCAGRTDTGVHARQQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E K +N L S IS+ +D FHARFSA+ R+Y Y + Sbjct: 61 VVHFDTAAERPLTAWVKGVNNSLPSS--ISVQGAKQIDSGFHARFSAVSRTYRYYFYSAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ W + LD MR AA L+G HDF+ FR+ CQA+SP+RT+ ++ Sbjct: 119 VRDPFKRFMTW-VHYPLDLAAMRRAAVCLLGTHDFSAFRASQCQAASPVRTLYALNLIEA 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + +FLH +R+ +GSL VG + + L+ L +++R P +GL Sbjct: 178 DDHCYFEIHGNAFLHHMVRNLMGSLMEVGQHRQSEAWLQDVLVSKNRSLAAKTYPAQGLS 237 Query: 241 FDSVEY 246 ++EY Sbjct: 238 LWNIEY 243 >gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437] Length = 258 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 130/253 (51%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + G+QRQ ++QG++E+ + VTGE + V GAGRTD+GVHAL Q Sbjct: 1 MGKIKLTVAYDGTDFSGFQRQPGKRTVQGTLEETLTRVTGETISVTGAGRTDAGVHALGQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HF+ WV + LNA L + + V ++FHAR+ A + Y Y Sbjct: 61 VIHFETSVPIPTERWV-----RLLNASL--PRDLLVTQAKEVPREFHARYDACWKHYRYT 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + T P + P L + M+ AA+HL G HDFT+F + Q R++ H Sbjct: 114 LDTCPIPDLFRRRYQTHYPHPLSRDRMQRAARHLTGTHDFTSFSAARAQVKDRRRSLYHC 173 Query: 176 DVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +V ++ I VV FL+ +R G+L +G GK ++ L+A+DR G Sbjct: 174 EVKEVNPGVLSIEVVGDGFLYHMVRILTGTLVEIGAGKIPPDEIRGILKAKDRSAAGKTF 233 Query: 235 PPEGLYFDSVEYS 247 PPEGL V Y+ Sbjct: 234 PPEGLVMVEVGYT 246 >gi|229825283|ref|ZP_04451352.1| hypothetical protein GCWU000182_00637 [Abiotrophia defectiva ATCC 49176] gi|229790655|gb|EEP26769.1| hypothetical protein GCWU000182_00637 [Abiotrophia defectiva ATCC 49176] Length = 249 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +++ Y+G+ Y G+Q Q +++G + A+ + GE +V+ GA RTD+GVHA Sbjct: 1 MKRFKLVVAYDGTAYCGYQYQPELPTVEGFVNDALSELLGENIVIIGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD L ALN K++D I I+ V FH R + I ++Y YRI T + Sbjct: 61 VAVFDSDTRIPAEKLALALNT--KLADDIRIMESLEVAADFHPRKNVIDKTYEYRINTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 ++ ++ + +LD E MR AA+++ GRHDFT+F S +RT+ DV + Sbjct: 119 ISFPTDRLYSYNVKHNLDIEAMREAAKYIEGRHDFTSFCSAKTDKEDKVRTVFQIDVEET 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + IRV FL+ +R G+L VG+GK + ++ ++ +DR G P +GL Sbjct: 179 LRSELIIRVRGDGFLYNMVRIIAGTLVKVGEGKISPNEIPSIIERKDRGHLGTTLPAKGL 238 Query: 240 YFDSVEY 246 + + Y Sbjct: 239 FLMGIRY 245 >gi|116873964|ref|YP_850745.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466636|sp|A0ALT4|TRUA_LISW6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116742842|emb|CAK21966.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 248 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQIQPNARTVQAEIEKALKKMHKGKNVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSDLDITADKFQKALQVMTPFD--ISFLTVDEAPADFHARFGTVGKEYRYIVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KIFDPFSRNFALHYPYELDIAKMKLASECLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ +S D+ +AL A+DR++ AP Sbjct: 177 YEEDEETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISSEDITEALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEYS 247 P+GLY V+Y Sbjct: 237 PQGLYLWRVDYE 248 >gi|93006392|ref|YP_580829.1| tRNA pseudouridine synthase A [Psychrobacter cryohalolentis K5] gi|92394070|gb|ABE75345.1| tRNA pseudouridine synthase A [Psychrobacter cryohalolentis K5] Length = 280 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 4/243 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IE+ G+ Y GWQRQ+ +Q ++E AI V E V V AGRTDS VHA +AHF Sbjct: 19 AIAIEFLGTHYHGWQRQREVLGVQEALETAISTVANEPVEVIAAGRTDSSVHAGNMIAHF 78 Query: 65 DLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + + P + +N+ L D I++ + + FHARF+AI R Y Y + + Sbjct: 79 -VTHAYRPSHNWLRGVNSLLP--DDIALRWVQPMPADFHARFAAIARRYRYITLNQTQRP 135 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + I + LD + M++AA +VG HDF+++R+ CQ++ P+R I H ++ + G Sbjct: 136 AILNHQVTHIHEPLDLKAMQLAAADIVGTHDFSSYRAAACQSNQPVRHISHANLFAHGQF 195 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G + D L +DR P A +GLYF + Sbjct: 196 IVFDIQADGFLHHMVRNLMGTLYAIGRHELEPADFLNILAKKDRTIAPPTASGDGLYFIN 255 Query: 244 VEY 246 Y Sbjct: 256 AYY 258 >gi|225164227|ref|ZP_03726501.1| tRNA-pseudouridine synthase I [Opitutaceae bacterium TAV2] gi|224801166|gb|EEG19488.1| tRNA-pseudouridine synthase I [Opitutaceae bacterium TAV2] Length = 354 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 124/250 (49%), Gaps = 6/250 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + Y+G+ + GWQ Q +G++IQ +E+ + + GE V +HG+GRTD+GVHA QV Sbjct: 100 RWKCTVAYDGTHFSGWQSQPDGNAIQDHLERRLARMLGESVRIHGSGRTDAGVHARAQVF 159 Query: 63 HFDLVREWVPVILCKALNA-----YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD P L A + + I + + IV FHARF A + Y Y + Sbjct: 160 HFDAAWRHGPERLLAAFRSGGGEGGGGVPSGIQVTDARIVSAAFHARFDATGKRYTYDLH 219 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFD 176 + W IP+ LD MR AA LVGRHDF F ++ + + +R + D Sbjct: 220 HGGFADPFTQDYCWSIPQKLDVVAMRAAAALLVGRHDFCAFSALSGEERETTVRHLTQLD 279 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +++ G I I A FL+ +R VG+L G GK T D+ + L R AP Sbjct: 280 ISARGARIRITARADGFLYRMVRRLVGALVHAGLGKLTPGDIAQILSEARRTPRIETAPA 339 Query: 237 EGLYFDSVEY 246 GL+ D V Y Sbjct: 340 HGLFLDRVFY 349 >gi|167755943|ref|ZP_02428070.1| hypothetical protein CLORAM_01463 [Clostridium ramosum DSM 1402] gi|167703935|gb|EDS18514.1| hypothetical protein CLORAM_01463 [Clostridium ramosum DSM 1402] Length = 245 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 134/247 (54%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + Y+GS + G+Q Q ++QG I+KA+ + E +++HG+GRTD+ VH +Q Sbjct: 1 MVRVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD RE +A+N +L + I IL+ VD+ FH+R+SAI++ Y Y + T++ Sbjct: 61 VFHFDTTREMPEAQWKRAINHFL--PNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTKE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E MR AA+ +G HDF +F S + Q + IR + + + Sbjct: 119 YS-PFETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCS-YDQYGNTIRELYELSITNE 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I+ +V F +R VG L VG + T L++ L ++ ++C A P+GLY Sbjct: 177 KGIIKFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLY 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LHEVFYD 243 >gi|224534868|ref|ZP_03675437.1| tRNA pseudouridine synthase A [Borrelia spielmanii A14S] gi|224513808|gb|EEF84133.1| tRNA pseudouridine synthase A [Borrelia spielmanii A14S] Length = 246 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 123/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q +IQG IEKA+ + + + +H +GRTD GVHA RQ+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQIITFDMN 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + I IL L V FH RFSA +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKSGIKILKLKHVKNSFHPRFSAQKRKYSYCILNSDNYYPWES 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A+ + K L+ N+ A+ L+G HDFTTF I ++ S R I G I Sbjct: 127 YQAYYVNKKLNISNLNQMAKILIGSHDFTTFSCIKDRSKSKFRHIHFAKFKKKGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS VG++ + + + EK LQ+++R AP L+ D V Y Sbjct: 187 IIGSSFLWKMVRSIVGTMLDIEIKNESISTFEKILQSKNRNLARTTAPANALFLDKVYY 245 >gi|256855196|ref|ZP_05560557.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|307291679|ref|ZP_07571554.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|256709709|gb|EEU24756.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|306497298|gb|EFM66840.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|315028842|gb|EFT40774.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000] Length = 249 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IE+ + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEETLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|227530236|ref|ZP_03960285.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540] gi|227349848|gb|EEJ40139.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540] Length = 256 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 134/252 (53%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M RY + Y+GS + G+Q Q + +++ ++ A+ + T EI V+ G+GRTD+GVH Sbjct: 1 MYRYKITFAYDGSNFSGFQIQPHKRTVEQVLKNAVNKIAKHPTPEIPVI-GSGRTDAGVH 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QVAHFD+ + KALN+ L + I I +VD FHAR+SA ++Y YR+ Sbjct: 60 ALNQVAHFDIPYHLSNESMRKALNSILPLD--ILIKKAELVDSDFHARYSAHNKTYRYRV 117 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + ++ LD MR AA++ +G HDFT+F + QA S +RT+ D Sbjct: 118 DQGEFVNPFKRNYTAHFKYPLDLTLMRKAAKNFIGEHDFTSFVASGSQAKSNVRTVYKID 177 Query: 177 V--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + N + FL+ QIR V L +G + D+++ L A+DR + A Sbjct: 178 IKRDKLRNEVVFDFTGNGFLYNQIRIMVAFLLEIGSKQRPVDDVKRVLAAKDRTQARMTA 237 Query: 235 PPEGLYFDSVEY 246 P GLY SV+Y Sbjct: 238 PASGLYLVSVDY 249 >gi|1644206|dbj|BAA10987.1| unknown [Bacillus subtilis] Length = 247 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 132/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + + + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAERWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ ++MR AA+H +G HDFT+F + + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHPIGTHDFTSFCAAKTEVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + +++ L+A+DR+ AP GL Sbjct: 179 TADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAERTAPGHGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLWNVYYD 246 >gi|300857214|ref|YP_003782198.1| tRNA pseudouridine synthase A [Clostridium ljungdahlii DSM 13528] gi|300437329|gb|ADK17096.1| tRNA pseudouridine synthase A [Clostridium ljungdahlii DSM 13528] Length = 244 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ Y GWQRQ N +IQ +E+AI +TG V GA RTD+GVHA Sbjct: 1 MKNVMLTIEYDGTNYSGWQRQNNAMTIQQRLEEAIKKITGNFSEVIGASRTDAGVHARGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + ALN L I +LN VD FH+R+ ++ + Y+Y I+T Sbjct: 61 VCNFFTNSKMPSPNFKMALNGVL--PKDIVVLNAREVDNSFHSRYHSLGKKYVYTIVTGN 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + LD + M+ A ++ +G HDF+ F+ A S +RT+ + Sbjct: 119 NRPVIGRQYVYYFRRKLDIDKMKNACKYFIGTHDFSAFKKKGSSAKSSVRTVKELTIAQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 NLI+ +V FL+ +R VG+L VG G++T ++ L ++DR + G P GL Sbjct: 179 DNLIKFSIVGDGFLYNMVRIIVGTLLEVGLGRFTPEYVKDILDSKDRSKAGKPVPALGLC 238 Query: 241 FDSVEY 246 + + Y Sbjct: 239 LEKIFY 244 >gi|256762037|ref|ZP_05502617.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256683288|gb|EEU22983.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] Length = 249 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERASEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|309389901|gb|ADO77781.1| tRNA pseudouridine synthase A [Halanaerobium praevalens DSM 2228] Length = 248 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 4/245 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y +I+EY+GS Y GWQRQKN +IQ IE+A+ + V + GAGRTD+GVHA Q A Sbjct: 5 YKIIVEYDGSNYSGWQRQKNTEQTIQQKIEEALTKINKSQVKIDGAGRTDAGVHAAGQSA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F L E P + ALN L D I V++ FHAR+ A + Y YRI+ Sbjct: 65 NFFLDVEIPPTKIPIALNTEL--PDDIICKKAIKVNQNFHARYDARGKKYRYRILNSNFN 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + + K LD + M+ AA+ G HDF +F + S +RTI D+ + + Sbjct: 123 SVFVRNFVYNVYKKLDLKMMQKAAKIFEGSHDFASFCAAGSSVESTVRTIRSIDIYAVDD 182 Query: 183 L-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + +V FL+ +R G+ G GK T ++LE LQ+ +RK G AP +GL Sbjct: 183 SEIWLDIVGNGFLYNMVRILAGTFIETGMGKKTLSELEVILQSCNRKNAGFTAPAQGLTL 242 Query: 242 DSVEY 246 V Y Sbjct: 243 MEVFY 247 >gi|323703515|ref|ZP_08115161.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] gi|323531506|gb|EGB21399.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] Length = 249 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 5/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y+G+ Y G+Q Q+ +++Q +E A+ V E V V GAGRTD+GVHA QV + Sbjct: 8 LTVAYDGTNYHGFQEQRGTGLATVQEVLEAALSKVANETVQVIGAGRTDAGVHARGQVVN 67 Query: 64 FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F VP + A+N+ L D I+++ V FHARFSA ++Y Y I + Sbjct: 68 FRSTNWPVPTEKIHLAVNSLL--PDDIAVIKAEEVPLDFHARFSATAKTYRYSIYNHRVM 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + A+ P+ LD E MR AAQ+L+G HDF +F++ +RTI ++ S Sbjct: 126 SPLHRLYAYHEPRPLDIEAMRQAAQYLLGTHDFKSFQAQGTPVKDTVRTIYRAELVSEPP 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI + + FL+ +R G+L VG GK + +++ ++A++R G PP GL Sbjct: 186 LIHLYLRGNGFLYNMVRIITGTLLDVGKGKKSPPEMKSIIEARNRTRAGTTVPPHGLCLM 245 Query: 243 SVEY 246 VEY Sbjct: 246 EVEY 249 >gi|294624568|ref|ZP_06703244.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601141|gb|EFF45202.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 257 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 136/248 (54%), Gaps = 16/248 (6%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ FHARFSA R Y Y Sbjct: 61 QVVHFDSDARREPRGWM-------LGTTARLPPSIAVRWCVPAADDFHARFSARARRYRY 113 Query: 115 RIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R++ RQ P + +W + LD + M AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPTLYRQTLSWER-RPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQ 172 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V FG ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP Sbjct: 173 AIHVQRFGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPT 232 Query: 234 APPEGLYF 241 APP+GL F Sbjct: 233 APPQGLVF 240 >gi|295099211|emb|CBK88300.1| pseudouridylate synthase I [Eubacterium cylindroides T2-87] Length = 243 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 128/244 (52%), Gaps = 4/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+GS Y GWQ+Q+N IQ IEKA+ + + + + +GRTD+ VHAL QV H Sbjct: 3 YKVILAYDGSNYAGWQKQENALGIQEVIEKALTTIHKKEIFITASGRTDAKVHALGQVFH 62 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F+ ++ P ALNA L + I IL +S+ FHARFSA + Y Y I T + Sbjct: 63 FEADKKIGPDRYKMALNALL--PEDIRILKVSMEADDFHARFSAKSKRYDY-ICTYEKEN 119 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGN 182 ++ +L+ E MR A+++LVG HDFT+F S P I+TI D+ Sbjct: 120 PFVYKYKEILNHTLNIEAMRKASEYLVGTHDFTSFSSSKIDPRKPRIKTITRIDIFEENQ 179 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I FL Q+R +L +VG K + ++++ L +D+ C A P GLY Sbjct: 180 DIRFIYEGTGFLRYQVRMMTETLIMVGSNKIDTEEVKRILDKKDKSACRYNASPNGLYLV 239 Query: 243 SVEY 246 V Y Sbjct: 240 HVNY 243 >gi|332685695|ref|YP_004455469.1| tRNA pseudouridine synthase A [Melissococcus plutonius ATCC 35311] gi|332369704|dbj|BAK20660.1| tRNA pseudouridine synthase A [Melissococcus plutonius ATCC 35311] Length = 257 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 130/248 (52%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q Q NG ++Q +EK ++ L + + + G+GRTD+GVHAL Sbjct: 1 MPRYKAIIAYDGTNFNGFQSQINGRTVQDELEKTLYKLNNNQSITIFGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ L AL+ + IS+ + V FHAR+ I ++Y ++I T Sbjct: 61 QVIHFDYLKARDVEKLRFALDT--QSPADISVKKIEEVSNNFHARYHVIEKTYQFKIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P S+D + A L+G HDFT+F + C S IRTI V+ Sbjct: 119 KTRDPFRRFYASYFPHSIDLAKIEKALPDLLGEHDFTSFCAAGCSVDSKIRTIYEASVSQ 178 Query: 180 FG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I FL+ +R VG+L +G GK T + + + ++R+ GP A PEG Sbjct: 179 TSEDEIIFTFRGNGFLYKMVRIIVGTLLKIGQGKIKETAIPEIIAGKNRRLAGPTAHPEG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLVQVIY 246 >gi|325920196|ref|ZP_08182154.1| pseudouridylate synthase I [Xanthomonas gardneri ATCC 19865] gi|325549321|gb|EGD20217.1| pseudouridylate synthase I [Xanthomonas gardneri ATCC 19865] Length = 257 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 132/247 (53%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G ++Q ++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPTVQARLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ FHARFSA R Y Y Sbjct: 61 QVVHFDSDARRDPRSWM-------LGTTARLPPSIAVRWCVPAAADFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + +SLD + M AAQ L+G +DF FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTLSWERRSLDADAMHTAAQALLGENDFNAFRSVQCQAPHARRNLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E++V A +FLH +R+ VGSL LVG G+ + L +DR GP A Sbjct: 174 ISVQRIGEVVEMQVQANAFLHHMVRNIVGSLILVGTGEQPVDWIATLLAGRDRSVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|296113461|ref|YP_003627399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4] gi|295921155|gb|ADG61506.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4] gi|326559732|gb|EGE10142.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169] gi|326568129|gb|EGE18213.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7] gi|326568548|gb|EGE18620.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1] Length = 268 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 IE+ G+ Y GWQRQ+ +Q IEKA+ + E + + AGRTD+GVHA +AHF Sbjct: 10 IEFIGTRYRGWQRQEEVIGVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAHFVTH 69 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 E + N+ L D I++ + + FHARFSAI R Y Y + + A+ Sbjct: 70 AERSAHSWLRGTNSLLP--DDIALRWVQPMPDDFHARFSAIARRYRYITLNQPYRPAILH 127 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + LD + M IA+Q +VG HDF++FR+ CQ++ P+RT+ H ++ G+ + + Sbjct: 128 HQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVTHANLFQHGSYLILD 187 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FLH +R+ +G+L VG G+ + + + A++R P A +GLYF + Y Sbjct: 188 IQADGFLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTLAPPTASADGLYFINAYY 246 >gi|303238754|ref|ZP_07325286.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] gi|302593633|gb|EFL63349.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] Length = 245 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++I+Y+GS Y GWQR + +IQG +E+ + ++ E + + G+GRTD+GVHA +QVA+F Sbjct: 6 LVIQYDGSKYRGWQRLGDSDKTIQGKLEQVLSQMSNEKIELIGSGRTDAGVHAFKQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + L YL + I +++ VD FH+R + YLYRI + Sbjct: 66 HTKSDLAEDAMLDYLYKYL--PEDIVVIDAEEVDNMFHSRHHVKGKKYLYRIWNAKRHNP 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + I + LD MR AA+H G HDF++F S+ + S R I ++ ++ Sbjct: 124 FMRKHCTHIAEPLDIRLMRNAAEHFTGMHDFSSFTSLKTKNKSKEREIFSVEIEKENEIM 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I FL+ R G+L VG G+ + ++ K L +DRK GP AP GL V Sbjct: 184 DIVFYGNGFLYNMARIMAGTLIEVGAGRINADNIPKILAKKDRKLAGPTAPTNGLILYDV 243 Query: 245 EY 246 EY Sbjct: 244 EY 245 >gi|229823506|ref|ZP_04449575.1| hypothetical protein GCWU000282_00804 [Catonella morbi ATCC 51271] gi|229786950|gb|EEP23064.1| hypothetical protein GCWU000282_00804 [Catonella morbi ATCC 51271] Length = 257 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/253 (35%), Positives = 130/253 (51%), Gaps = 8/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 M RY + + Y+GS + G+Q Q NG SIQ +++ A+ + G + +GRTDSGVH Sbjct: 1 MPRYAIQLAYDGSRFVGYQVQPNGPSIQANLDAALIKMAKCPEGVTIPTVASGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV HFD + +ALNA L I ++ ++ V FHAR+ AI + Y YR+ Sbjct: 61 ALGQVVHFDYPAPMPQQAMQRALNALL--DPAIKVVAVARVADDFHARYHAIGKEYRYRV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++ + P D + + A + +VG HDFT+F S +RT+ Sbjct: 119 DIGAYANPFKRLYSLHHPYRYDLDRINQALEAVVGTHDFTSFCSTKTDKEDKVRTVHLAR 178 Query: 177 VNSFGNLIEIRVVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V + E+ R FL+ IR VG+ +GDG +LE+ +Q Q+RKE GP A Sbjct: 179 VWEDRDQQELVFQFRGTGFLYNMIRILVGTSLQIGDGLRPVNELERLIQVQNRKEAGPTA 238 Query: 235 PPEGLYFDSVEYS 247 PP+GLY V Y Sbjct: 239 PPQGLYLHQVFYE 251 >gi|148263121|ref|YP_001229827.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4] gi|189030134|sp|A5GB00|TRUA_GEOUR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146396621|gb|ABQ25254.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4] Length = 244 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 126/248 (50%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +IIEY+G+ Y GWQ Q NG +IQ IE ++ + GE V +H +GRTD+GVHAL Sbjct: 1 MRQIKLIIEYDGTNYSGWQVQPNGITIQQLIEASLATMLGEPVKLHSSGRTDAGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI--IT 118 VA F + LNA L + I+I + F+ R A + Y Y I Sbjct: 61 VAAFKTGKLLPLRAFSDGLNALLP--NDIAIRDAVEAPLSFNPRADAKSKHYRYTIYNAV 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R++PLA + +W + +LD E M+ AA H VG HDF FR+ +C A + +R + V Sbjct: 119 RRSPLA--RLSSWHLRGALDIERMQAAASHFVGEHDFAAFRASNCAAKTTVRRLFSVSVA 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + I V FL +R G+L VG GK + L + DR G APP+G Sbjct: 177 KDGESVIIDVHGSGFLKNMVRIIAGTLAEVGQGKKNPDAVPGLLVSGDRAASGITAPPQG 236 Query: 239 LYFDSVEY 246 L V Y Sbjct: 237 LCLVEVFY 244 >gi|322386788|ref|ZP_08060412.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100] gi|321269070|gb|EFX52006.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100] Length = 249 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 130/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I Y+G + G+QRQ + S+Q IEK + + G+ +V+HGAGRTDSGVHAL Sbjct: 1 MTRYKALISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPIVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V + FHAR+ ++Y + + Sbjct: 61 QVIHFDLPSARDEEKLRFALDT--QTPEDIDVISVEEVTEDFHARYKPHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH----F 175 + + + A P L+ M A + L G HDFT F + + +RTI F Sbjct: 119 RPKNPMMRHYATHYPYPLEIPLMEQAIKALEGTHDFTGFTASGTSVENKVRTITKASLTF 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D N + FL+ QIR+ VG+L +G+ + +E+ L+ +DR+ GP A Sbjct: 179 DAQR--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVNQIERILEEKDRQLAGPTAA 236 Query: 236 PEGLYFDSVEYS 247 P GLY + Y Sbjct: 237 PNGLYLKEIIYE 248 >gi|325689043|gb|EGD31051.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK115] Length = 249 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAEHNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|297620615|ref|YP_003708752.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] gi|297375916|gb|ADI37746.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 137/249 (55%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +Y +II Y+G+ Y GWQ Q N SIQ +E+ + ++T + GAGRTD+GVHA+ Q Sbjct: 1 MKKYKLIIAYDGTQYSGWQMQPNALSIQEVLEEKLKVLTKTRTSLTGAGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + + P +L +LN + I I+++ V FHAR+SA + Y Y + Sbjct: 61 VAHFKVEAPFNPSLLRLSLNG--LLPKDIRIMDVEEVPLDFHARYSATNKIYYYHLNLGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS---PIRTIDHFDV 177 EK +W I SL+ E ++ +L+G H+F+ F + Q ++ PIRT+ V Sbjct: 119 VQDPFEKQYSWNITNSLNMELLKKGISYLIGTHNFSAFANEANQGAAKKNPIRTLKRISV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + SFL+ +R+ G+L V GK + +++K L+++DR+ G AP + Sbjct: 179 VPERIGMRLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRAAPAK 238 Query: 238 GLYFDSVEY 246 GL+ ++Y Sbjct: 239 GLFLVRIDY 247 >gi|227494575|ref|ZP_03924891.1| tRNA-pseudouridine synthase I [Actinomyces coleocanis DSM 15436] gi|226832309|gb|EEH64692.1| tRNA-pseudouridine synthase I [Actinomyces coleocanis DSM 15436] Length = 302 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 145/266 (54%), Gaps = 24/266 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + Y G+ + GW +Q ++QG++E+A+ LV E V + AGRTD+GVHA Q Sbjct: 1 MRFRLECAYRGTFFRGWAKQPGLRTVQGTLEEALALVLREPVELTVAGRTDAGVHASAQT 60 Query: 62 AHFDL-------VREWVPVI-----LCKALNAYLKISDT-------ISILNLSIVDKQFH 102 AHFD+ V + V+ L + LN ++ +D+ + + ++ V F Sbjct: 61 AHFDVCADRLMQVTKQAEVVHACEALTRRLNRLIRRADSNASGLPDVVVYSIEPVADVFD 120 Query: 103 ARFSAIRRSYLYRI--ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 ARF+A+RR Y+YR+ + + PL E W + + L MR AA+ LVG HDF +F Sbjct: 121 ARFAALRRHYVYRVADVAGRNPLYAES--VWWVEEPLQIHLMREAARALVGEHDFLSFCK 178 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + +S IRT++ D+ +E+R+ A +F H+ +RS VG+L VG G+ T + Sbjct: 179 PR-EGASTIRTLEAVDLVETDTGLEVRLSADAFCHSMVRSIVGALVEVGRGRKPVTWIAD 237 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 + R++ PLAPP GL +V+Y Sbjct: 238 LVAFPSREQAAPLAPPHGLTLRAVDY 263 >gi|168187780|ref|ZP_02622415.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] gi|169294335|gb|EDS76468.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] Length = 246 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 136/242 (56%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++IEY+GS Y GWQ+QK+ ++Q IE+AIF +T + + + G RTD+GVHA VA+F Sbjct: 7 LVIEYDGSNYSGWQKQKHSMTVQQRIEEAIFDITKQNIEIIGCSRTDAGVHARNFVANFI 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P A+N+ K+ I I V FHARF + + Y+Y I+ R+ P + Sbjct: 67 IDSNIPPEKFKYAINS--KLPKDIVIKKSCEVPIDFHARFQSKGKKYVYTILNREEPPTI 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 ++G + K LD + M+ A+++ +G H+F +F + S +RTI + DV ++I Sbjct: 125 DRGVVYHFNKKLDVDLMKSASKYFIGSHEFDSFYKKAGSSVKSTLRTIYYCDVTKVDDII 184 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I V+ FL+ +R G+L VG + D++ + A+DR+ G PP+GL + V Sbjct: 185 KIIVIGEGFLYNMVRIMAGTLVEVGITRIKPEDIKTIILAKDRERAGRSLPPQGLCLEEV 244 Query: 245 EY 246 Y Sbjct: 245 LY 246 >gi|319639209|ref|ZP_07993960.1| tRNA pseudouridine synthase A [Neisseria mucosa C102] gi|317399393|gb|EFV80063.1| tRNA pseudouridine synthase A [Neisseria mucosa C102] Length = 281 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q ++Q ++E+A+ + GE + AGRTD+GVHA QV Sbjct: 14 RWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALTSIAGERINTIVAGRTDTGVHATAQV 73 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L D +++L V F+ARF A R Y Y + + Sbjct: 74 VHFDTSVSRPEQAWVRGVNAHLP--DGVAVLLAQKVAPHFNARFDAYGRHYRYLLESSPV 131 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 132 RSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYSTKISGTS 191 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + +FLH +R+ +G+L VG G+ + + E A+ R P +GLY Sbjct: 192 RYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLMAPPTFMSDGLYL 251 Query: 242 DSVEY 246 V+Y Sbjct: 252 TGVDY 256 >gi|332653968|ref|ZP_08419712.1| tRNA pseudouridine synthase A [Ruminococcaceae bacterium D16] gi|332517054|gb|EGJ46659.1| tRNA pseudouridine synthase A [Ruminococcaceae bacterium D16] Length = 250 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 123/239 (51%), Gaps = 6/239 (2%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 YNG+ Y GWQ QKN S+ ++EKA+ V V GAGRTD+GVHA +A+F Sbjct: 11 YNGTAYHGWQVQKNAISVAETLEKALSTVVCHPVKCTGAGRTDAGVHAEVYIANFRTTS- 69 Query: 70 WVPVILCK--ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 I C L ++ I ++ + V +F+A S R+ Y YRI + Sbjct: 70 ---TIPCDRIPLAVNTRLPRDIVVVKATEVPMEFNAIGSCHRKEYTYRIYNSRLGNPFYV 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 RAW PK LD + M+ AA VG HDF RS+ + + +RT+ +FDV LIE + Sbjct: 127 DRAWFYPKYLDEKIMQQAADQFVGTHDFRAVRSVGTETRTTVRTVYYFDVTRHDQLIECK 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V A FL+ +R+ G++ +GK + D+ L++ +R GP PP GLY + Y Sbjct: 187 VCANGFLYNMVRAMTGTIVYAAEGKLSPQDIPAILESGNRTLAGPTVPPGGLYMTKLWY 245 >gi|289435864|ref|YP_003465736.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172108|emb|CBH28654.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 248 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q + ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPDTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKALQVMTPFD--ISFLIVEEAPADFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-N 178 + + A P L+ E M++A++ LVG HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPE 237 + + I FL+ +R G+L G G+ + D+ KAL A+DR++ APP+ Sbjct: 179 EEDDTLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|257866559|ref|ZP_05646212.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257872925|ref|ZP_05652578.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257800517|gb|EEV29545.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257807089|gb|EEV35911.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] Length = 248 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + + G+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIQGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ ++ IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKSVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P LD E ++ A +G HDFT+F + RTI V Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLVHVAYE 248 >gi|325697516|gb|EGD39402.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK160] Length = 249 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYNFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A HL G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAHLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|167759245|ref|ZP_02431372.1| hypothetical protein CLOSCI_01592 [Clostridium scindens ATCC 35704] gi|167663119|gb|EDS07249.1| hypothetical protein CLOSCI_01592 [Clostridium scindens ATCC 35704] Length = 248 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 129/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +++ + K + +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTIAYDGTDYCGWQIQPNGITVEEILNKKLKKLTGEDIHVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF-SAIRRSYLYRIITR 119 VA FD + ALN ++ D I I++ V +H R+ I ++Y Y I Sbjct: 61 VAVFDTESSIPAERMAYALNQ--RLPDDIVIVSSKEVPLDWHPRYQDEILKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L++ + + ++ E MR A +L+G HDF +F ++ +RT+ + Sbjct: 119 PVQNPLKRRYSAFVSFPMNVEKMREGAAYLLGEHDFVSFCNVRTSVEDTVRTVKELMIEQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I IR+ FL+ +R G+L VG G + T +++ L+A++R + G APPEGL Sbjct: 179 EGPDITIRITGNGFLYNMVRIIAGTLIRVGRGFYEPTKVKEILEARERTQAGVTAPPEGL 238 Query: 240 YFDSVEYS 247 +EY Sbjct: 239 TLVCIEYD 246 >gi|121595540|ref|YP_987436.1| tRNA pseudouridine synthase A [Acidovorax sp. JS42] gi|166228674|sp|A1WAT5|TRUA_ACISJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120607620|gb|ABM43360.1| tRNA pseudouridine synthase A [Acidovorax sp. JS42] Length = 274 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 125/259 (48%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q + +++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGQAYNGWQSQPSANTVQDRLEAALGRFATQEVHTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A+ R Y Y ++ Sbjct: 61 VHFDTELQRAPFSWVRGTNTFLPAD--IAVQWAQPVPDAFHSRACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--- 178 +++ GR + +LD + M A QHL+G HDFT+FR+ CQA SP++T+ D+ Sbjct: 119 RPSVDAGRVGWVFHALDEQAMHKAVQHLLGEHDFTSFRASACQAKSPVKTLHRIDITRRA 178 Query: 179 -----SFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 S G +FLH IR+ +G + +G G + + L+A+ R Sbjct: 179 PPAGESTGTHGCVPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPEWMRTVLEARSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 DAAAPTFSPDGLYFQGPVY 257 >gi|315640131|ref|ZP_07895253.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] gi|315484108|gb|EFU74582.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] Length = 248 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 130/248 (52%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY II Y+G+ + G+QRQ G ++Q +E+ + + + +VVHG+GRTD+ VHAL Q Sbjct: 3 MVRYKAIIAYDGTLFHGFQRQPQGRTVQEELERTLSKMASQPIVVHGSGRTDAHVHALGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD +E + A++ + + I++ + IVD+ FHAR+ + Y + + + Sbjct: 63 VIHFDYPKERPLEKMRFAMDT--QTPEDIAVKQVEIVDELFHARYLVQEKVYEFHVQIGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A P LD + A L+G HDF+ F + +RTI + Sbjct: 121 PRSPFRRHYASYYPYPLDLAKIERALPDLLGTHDFSAFCASGSSVEDKVRTIYEATMVHD 180 Query: 181 GNLIEIRVVAR--SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 L E+ R FL+ IR VG+L +G+G+ T L K + ++DR GP A PEG Sbjct: 181 EALSELVFTFRGDGFLYKMIRILVGTLLKIGNGRLEETSLPKIIASKDRNCAGPTAHPEG 240 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 241 LYLKEVKY 248 >gi|332521721|ref|ZP_08398172.1| tRNA pseudouridine synthase A [Lacinutrix algicola 5H-3-7-4] gi|332042551|gb|EGI78752.1| tRNA pseudouridine synthase A [Lacinutrix algicola 5H-3-7-4] Length = 247 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q N S+Q +EK + + E + GAGRTD+GVHA++ Sbjct: 1 MRYFIELSYNGKAYHGWQVQPNAISVQEVLEKGLSTLLKEKISTMGAGRTDAGVHAIQLF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + +L LN++L + ISI N+ V HARF A+ R YLYRI ++ Sbjct: 61 AHFDTEVIFEEHMLQYKLNSFL--PEAISIQNIFKVKADAHARFDAVSRQYLYRIALQKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E +A+L+ LD + ++ A + L DF F + + I G Sbjct: 119 PFNTE--QAFLLKAKLDIDRIKEATKILFNYKDFQCFSKSNTDVKTYNCNIMKAQWEVVG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N ++ + A FL +R+ VG+L VG GK D+ +++++R E G P LY Sbjct: 177 NELQFTIKADRFLRNMVRAIVGTLINVGVGKLEVNDMHNIIKSKNRSEAGFSVPAHALYL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 TEVAY 241 >gi|256854698|ref|ZP_05560062.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|256710258|gb|EEU25302.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] Length = 246 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 125/242 (51%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + ++ + ++FHAR++A + Y Y + P A Sbjct: 66 KTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPIPNA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + G ++ Sbjct: 124 FERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNGEML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FLH +R VG+L +G G +++ + R+ AP +GL+ D V Sbjct: 184 QFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGASETAPAQGLFLDEV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|323350454|ref|ZP_08086117.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66] gi|322123391|gb|EFX95069.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66] Length = 249 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFLGNGFLYKQIRNMVGTLLKIGNKRMPVEQVQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|21243447|ref|NP_643029.1| tRNA pseudouridine synthase A [Xanthomonas axonopodis pv. citri str. 306] gi|30913394|sp|Q8PJ25|TRUA_XANAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21109001|gb|AAM37565.1| tRNA pseudouridine synthase A [Xanthomonas axonopodis pv. citri str. 306] Length = 257 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ FHARFSA R Y Y Sbjct: 61 QVVHFDSDARREPRGWM-------LGTTARLPPSIAVRWCVPAADDFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTLSWERRPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP A Sbjct: 174 IHVQRIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|327404294|ref|YP_004345132.1| tRNA pseudouridine synthase A [Fluviicola taffensis DSM 16823] gi|327319802|gb|AEA44294.1| tRNA pseudouridine synthase A [Fluviicola taffensis DSM 16823] Length = 256 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 128/249 (51%), Gaps = 11/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 RY + + Y G+ Y GWQ Q N SSIQ IE+ + + G + + V G GRTD+GVHA Sbjct: 3 FRYALELAYRGTNYHGWQIQPNASSIQEEIERRLTQLNGNLPISVVGCGRTDTGVHATYY 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD +E L LN L + IS+ + +V ++FHARFS R+Y Y I ++ Sbjct: 63 VLHFDSQKELDTEQLVFKLNKML--PEDISLFSAQLVSEEFHARFSPTTRTYHYFIHQKK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L+ R I +D E M AA+ L+G DFT+F +H + I T+ N Sbjct: 121 NPFLLDSHR---IVSEIDFEAMNRAARLLLGTQDFTSFSKLHTDVKTNICTVSEAKWNQV 177 Query: 181 GN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 EI+ A FL +R+ VG+L VG G D+ K + +DR E P + Sbjct: 178 SESEWYFEIK--ADRFLRNMVRAVVGTLLEVGYGNLGENDITKIVALKDRGEAKLSVPAK 235 Query: 238 GLYFDSVEY 246 GL+ ++EY Sbjct: 236 GLFLVNIEY 244 >gi|237733260|ref|ZP_04563741.1| tRNA pseudouridine synthase A [Mollicutes bacterium D7] gi|229383641|gb|EEO33732.1| tRNA pseudouridine synthase A [Coprobacillus sp. D7] Length = 245 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + Y+GS + G+Q Q ++QG I+KA+ + E +++HG+GRTD+ VH +Q Sbjct: 1 MVRVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD RE +A+N +L + I IL+ VD+ FH+R+SAI++ Y Y + T + Sbjct: 61 VFHFDTTREMPEAQWKRAINHFL--PNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E MR AA+ +G HDF +F S + Q + IR + + + Sbjct: 119 YS-PFETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCS-YDQYGNTIRELYELSITNE 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I+ +V F +R VG L VG + T L++ L ++ ++C A P+GLY Sbjct: 177 KGIIKFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLY 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LHEVFYD 243 >gi|39997968|ref|NP_953919.1| tRNA pseudouridine synthase A [Geobacter sulfurreducens PCA] gi|42559718|sp|P60350|TRUA_GEOSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39984913|gb|AAR36269.1| tRNA pseudouridine synthase A [Geobacter sulfurreducens PCA] gi|298506909|gb|ADI85632.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens KN400] Length = 244 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 6/243 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I+EY+G+ Y GWQ Q NG SIQ +E A+ + E V + +GRTD+GVHA VA FD Sbjct: 6 LILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLKEPVRLRASGRTDAGVHARGMVAAFD 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI--ITRQAPL 123 R LNA L I++ + F+ RF+A + Y Y I R++PL Sbjct: 66 TDRSIPLRAFSDGLNALL--PPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGERRSPL 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + ++W + +L+ MR AA+HL G DF +FR+ C A + IR +D +++ G + Sbjct: 124 V--RLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCAARTTIRRVDAVEISDDGEM 181 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + V FL +R VG+L VG GK T + + + GP APP+GL Sbjct: 182 LTVDVHGSGFLRNMVRIMVGTLVEVGRGKLTPEHVAQMVVCPGVVPAGPTAPPQGLCLQK 241 Query: 244 VEY 246 V + Sbjct: 242 VRF 244 >gi|23097605|ref|NP_691071.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831] gi|38258776|sp|Q8CXP1|TRUA_OCEIH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22775828|dbj|BAC12106.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831] Length = 253 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q + ++QG +EKA++ + G+ + + +GRTD+GVHA+ Sbjct: 1 MERLKCTVSYDGSDFAGFQVQPDHRTVQGVLEKALYNMHKGKSIRIQASGRTDTGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E +ALN L D + I + ++FHAR+S + Y Y ++ Sbjct: 61 QVIHFDSPLEIPERNWKQALNTLL--PDDVRIQKVEKKTEEFHARYSVKEKEYHYFVLNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN 178 + P ++G + P+ LD E M+ A Q+L G HDFT+F S S +RT+ H + Sbjct: 119 EDPNVFQRGYVYHEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVKGSKVRTLYHVSCH 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G IE FL+ +R + L VG GK D+ L +++R++ G P+G Sbjct: 179 QTGTNIEFIFRGSGFLYNMVRIMMSVLIDVGKGKRNPEDIIDLLASKNRQQIGKTMAPQG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLWRVSYE 247 >gi|225028683|ref|ZP_03717875.1| hypothetical protein EUBHAL_02962 [Eubacterium hallii DSM 3353] gi|224953993|gb|EEG35202.1| hypothetical protein EUBHAL_02962 [Eubacterium hallii DSM 3353] Length = 253 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 128/251 (50%), Gaps = 10/251 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y M I Y+GS Y+GW+ Q + +IQG +E + + GE + V GAGRTD+GVHA VA+ Sbjct: 5 YKMTICYDGSRYYGWEHQPDRDTIQGKLENVLTRMCGEFIDVLGAGRTDAGVHARGMVAN 64 Query: 64 --FDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 FD RE P + +N YL D I++ + ++FHAR+ A+ + Y Y Sbjct: 65 AVFDATDKERGGRERTPDEIRDYMNRYL--PDDIAVKEVREASERFHARYKAVGKLYRYT 122 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ ++ K D E M+ AA +L G+HD+ +F S +R +D Sbjct: 123 CYDGPVKPVFQRKYVAVLEKRPDVEKMQQAAAYLEGKHDYKSFCGNPRMKKSTVRVVDKI 182 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ G+ I FL +R VG+L VG GK + + L+A++R+ GP AP Sbjct: 183 EITRKGSFIYFDFHGTGFLQNMVRILVGTLLEVGKGKIKPEQIPEILEAKNRQMAGPTAP 242 Query: 236 PEGLYFDSVEY 246 +GL V+Y Sbjct: 243 AQGLCLIKVDY 253 >gi|257899365|ref|ZP_05679018.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] gi|257837277|gb|EEV62351.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] Length = 248 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQRMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV ++FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRKVEIVSEEFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDV 177 + + A P LD ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|225569151|ref|ZP_03778176.1| hypothetical protein CLOHYLEM_05231 [Clostridium hylemonae DSM 15053] gi|225161950|gb|EEG74569.1| hypothetical protein CLOHYLEM_05231 [Clostridium hylemonae DSM 15053] Length = 246 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+GS Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 3 MRTYKLTVSYDGSRYQGWQRQATTDNTIQFVLEWSIGKLVGYRVHVDGSGRTDAGVHARG 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + P +LN YL + I I+ +V FHAR SA + Y Y I R Sbjct: 63 QVASVKLSKLYDPQEFKDSLNRYL--PEDIRIVKAELVKNGFHARKSAKGKKYEYYIDCR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A ++LVG +FT+F + + P+R I + + S Sbjct: 121 EKPDVFSRRYCYHYPEKLDIEAMRNAVEYLVGVKNFTSF-TDDKECRDPVRRITNIKIVS 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I FL+ +R G+L +G GK S L + A+DR G LAP GL Sbjct: 180 TGDKVRITYYGTGFLYHMVRILTGTLLEIGTGKRDSAMLPVVIAAEDRSLAGFLAPARGL 239 Query: 240 YFDSVEY 246 + V Y Sbjct: 240 FLRKVYY 246 >gi|58336660|ref|YP_193245.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus NCFM] gi|227903218|ref|ZP_04021023.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus ATCC 4796] gi|62901152|sp|Q5FM60|TRUA_LACAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58253977|gb|AAV42214.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus NCFM] gi|227869023|gb|EEJ76444.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus ATCC 4796] Length = 262 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 + RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ ++V G+GRTD+GVHA+ Sbjct: 2 LTRYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRIIVQGSGRTDAGVHAIG 61 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 62 QVIHFDYPGKEIPANRMILALNSMMPTD--IVFTDCQIVDEDFHARYSIKGKWYRYRLSL 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 ++ P LD E MRIAAQ L+G+HDFT+F + Q +RTI + ++ Sbjct: 120 DYFVNPFKRFYTGHFPYQLDLEKMRIAAQDLLGKHDFTSFAASGGQIKDKVRTIYYINIT 179 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N I + FL+ +R V +L +G+ + DL + + A+DR+E A Sbjct: 180 KDEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNERRPLHDLRRVIAAKDRQEVRQTAQG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 SGLYLYHVFYD 250 >gi|327468298|gb|EGF13783.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK330] Length = 249 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQLHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V +FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDEFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|160894723|ref|ZP_02075498.1| hypothetical protein CLOL250_02274 [Clostridium sp. L2-50] gi|156863657|gb|EDO57088.1| hypothetical protein CLOL250_02274 [Clostridium sp. L2-50] Length = 245 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 126/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +I+ + + I + E + V GA RTD+GVHA Sbjct: 1 MKRVKLVVAYDGTNYHGWQVQDNGITIEEVLNRTISELVQEDIKVIGASRTDAGVHACGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN ++ D I I VD FH R++ ++Y Y I+ R+ Sbjct: 61 VAVFDTESRIPGDKFSFALNQ--RLPDDIRIQESCEVDADFHPRYADTVKTYEYNILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ A +D E M AA +LVG HDF +F S Q + +RTI +V Sbjct: 119 FEMPSKRLYAAFCYYPMDIERMNQAAAYLVGEHDFKSFCSAGAQVQTTVRTIYAVNVTKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ IR+ FL+ +R G+L VG G +++ L+A+DR + GP A +GL Sbjct: 179 DDMVHIRITGNGFLYNMVRIIAGTLMQVGTGLMEPERVKEILEARDRSKAGPTAVAKGLT 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 LVEIRYE 245 >gi|315283801|ref|ZP_07871873.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120] gi|313612551|gb|EFR86621.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120] Length = 248 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLRVEEVADDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P L+ M++A++ L+G HDFT+F S + S +RT+ + ++ Sbjct: 119 KVFDPFSRNFALHYPYELNLAKMKLASERLIGEHDFTSFCSARTERDSKVRTL--YSIDF 176 Query: 180 FGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + E V+A FL+ +R G+L G G+ + ++ +AL A+DR++ AP Sbjct: 177 YEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPEEITEALLARDRQKLISKTAP 236 Query: 236 PEGLYFDSVEYS 247 P+GLY V+Y Sbjct: 237 PQGLYLWRVDYE 248 >gi|220928242|ref|YP_002505151.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10] gi|254789632|sp|B8I814|TRUA_CLOCE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219998570|gb|ACL75171.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10] Length = 245 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 125/243 (51%), Gaps = 5/243 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ Y GWQ QKN ++Q I+KA+ + GE V V G RTD GVHA QVAHF Sbjct: 6 LTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVGVTGCSRTDVGVHAYGQVAHF- 64 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L +P A+N L D I I N V ++FHAR+SA + Y Y I A Sbjct: 65 LTDSKIPGDKFSYAINNLL--PDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSPHASA 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SFGNL 183 + + R+ + L+ M+ AA + G HDF F++ Q S +R I +V N+ Sbjct: 123 IMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATGGQVRSTVREIYGMEVYVKEDNM 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I I V FL+ +R G+L VG GK +++ + DR + G AP +GLY Sbjct: 183 ISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGKTAPAQGLYLVQ 242 Query: 244 VEY 246 + Y Sbjct: 243 IYY 245 >gi|95928687|ref|ZP_01311433.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684] gi|95135032|gb|EAT16685.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684] Length = 251 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R C+ +EY+G+ Y GWQ Q N ++Q IE A+ V G V V+ +GRTD+GVHA+ Sbjct: 1 MPRLCLTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIGASVRVYSSGRTDAGVHAIDM 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD V +P+ + +N +L I + + V FHARF A + Y YR+ Sbjct: 61 KAHFD-VETLLPLSAYREGVNRFLP--QDIVVRQVCRVADDFHARFDAQGKWYRYRLYRG 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L + +W + LD E M AA LVG HDF F++ C A++ RT+ + Sbjct: 118 RIRSPLHRLTSWHVAGGLDVEAMTQAADALVGTHDFAAFQASGCAAATTQRTLFEVLLID 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I V FL +R VGSL VG K T+ L + L + R G AP +GL Sbjct: 178 EGDELIIDVRGSGFLKNMVRIIVGSLVEVGRAKLTAGQLAEILASGQRCRAGLTAPAQGL 237 Query: 240 YFDSVEY 246 V Y Sbjct: 238 CLMQVWY 244 >gi|146302394|ref|YP_001196985.1| tRNA pseudouridine synthase A [Flavobacterium johnsoniae UW101] gi|146156812|gb|ABQ07666.1| tRNA pseudouridine synthase A [Flavobacterium johnsoniae UW101] Length = 284 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG+ Y GWQ Q N SS+Q ++ KA+ ++ + V GAGRTD+GVHA Sbjct: 41 MRYFIHFAYNGTHYHGWQFQPNASSVQETLNKALSVLLNSTINVMGAGRTDTGVHAEEMY 100 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL + +L LN+YL I++ NL V H RF A +R+Y Y I T + Sbjct: 101 GHFDLEKSIDIPVLVHKLNSYL--PKDIAVYNLIPVHDDAHCRFDATKRTYEYHINTVKN 158 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E +W + + LD E M AA+ L+ DF F ++ ++ TI Sbjct: 159 PFLEE--LSWYVTQKLDVELMNEAAKILLKHTDFQCFSKVNTDVNTFDCTIFEAYWKQEN 216 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L +G K T D E + +++R++ G P GLY Sbjct: 217 NKLVFTISANRFLRNMVRAIVGTLINIGLHKITLADFENIIASKNREKAGFSVPAHGLYL 276 Query: 242 DSVEY 246 + Y Sbjct: 277 TKIYY 281 >gi|42518460|ref|NP_964390.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii NCC 533] gi|51316717|sp|Q74L59|TRUA_LACJO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41582745|gb|AAS08356.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii NCC 533] Length = 263 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNQRTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALNA + I DT+ IVD+ FH ++S + Y Y + + Sbjct: 64 IHFDYPGKEIPAKNMMLALNALMPI-DTV-FFESEIVDEDFHVQYSTKGKWYRYVVDQHR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 122 FTDPFNRFYTGHYPYPLDISLMKQAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITPD 181 Query: 181 GNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP G Sbjct: 182 PDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEVRTTAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLQQVFYE 250 >gi|239618279|ref|YP_002941601.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1] gi|259550401|sp|C5CGS8|TRUA_KOSOT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239507110|gb|ACR80597.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1] Length = 250 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+GS +FG+Q Q N ++QG E+A+ + + GAGRTD+GVHA Q Sbjct: 1 MKRFAAVVVYDGSNFFGYQIQPNKRTVQGVFEEALERIHKAKIPTDGAGRTDTGVHAYGQ 60 Query: 61 VAHF--DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V F +L R P + ALNA L D I + + V F RF+A +R Y Y I+ Sbjct: 61 VIAFTSNLDR-LTPKHMKDALNANL--PDDIYVRRIHEVPSNFSPRFAAKKRIYHYYILN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P + W P +D MR A+++L+G HDFT+FR+ H S+ IRTI + Sbjct: 118 TKEPDLFRRKYFWWFPYEVDLNRMRQASRYLIGEHDFTSFRTGHDDRST-IRTITGIRIL 176 Query: 179 SF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N+I IRV SFL +R+ VG L VG G ++ L+A+DR + AP Sbjct: 177 RLQKNIILIRVEGISFLRRMVRNIVGLLMRVGTGGIEPKKTKEILEARDRSKLPSSAPAH 236 Query: 238 GLYFDSV 244 GL V Sbjct: 237 GLVLHKV 243 >gi|315925222|ref|ZP_07921436.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621456|gb|EFV01423.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC 23263] Length = 249 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 118/247 (47%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++I Y G+ Y GWQRQ+N SI +I AI VTGE V ++GAGRTD+GVHA Q Sbjct: 1 MRNIALVIAYKGTRYAGWQRQQNAVSIDETIGDAIAAVTGERVTLYGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F ALNA+L I I V FH+R+ A ++Y YR+ Sbjct: 61 RANFKTRVRMPADRFAPALNAHL--PRDIRIQKSFEVPADFHSRYGAKEKTYCYRVWAAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L W + L+ + MR A LVG HDF TF + A + +R ID + Sbjct: 119 VADPLTDDFCWHVRFPLNVDAMRRGAAVLVGTHDFKTFMASGSGAKTTVRRIDAIGIEQK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I FL+ +R G+L +G G+ + L A+ R G AP GL Sbjct: 179 GRMITFTFCGTGFLYNMVRIIAGTLVEMGSGRRDPESMAAILAAKGRTAAGATAPARGLT 238 Query: 241 FDSVEYS 247 ++V Y Sbjct: 239 LEAVAYG 245 >gi|332529464|ref|ZP_08405423.1| tRNA pseudouridine synthase A [Hylemonella gracilis ATCC 19624] gi|332041110|gb|EGI77477.1| tRNA pseudouridine synthase A [Hylemonella gracilis ATCC 19624] Length = 270 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 127/255 (49%), Gaps = 12/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ Y GWQ Q +G ++Q +E A+ E + + AGRTD+GVH L QV Sbjct: 1 MRVALGLSYDGAAYDGWQSQPSGRTVQDRLEHALGRFANERITTNCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V +FH+R SA R Y Y ++ Sbjct: 61 VHFDTQAQRTPYAWVRGTNTHLP--PDIAVQWAHPVPVEFHSRASATSRRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E R + + LD + M+ A HL+G DFT+FR+ CQA SPI+ + +++ G Sbjct: 119 RPSVEARRVGWVFQPLDLDAMQAALPHLLGERDFTSFRAAACQALSPIKNLMRVEISRRG 178 Query: 182 N----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 A +FLH IR+ +G L ++G GK + + + A+ R Sbjct: 179 TRAGAEAPETCYWRFEFEASAFLHHMIRNIMGCLIVIGQGKKPPEWMAEVVAARSRDAAA 238 Query: 232 PLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 PTFMPDGLYFLGPRY 253 >gi|324989944|gb|EGC21886.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK353] Length = 249 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPDERDEEKLRFALDT--QTPEDIDFISVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITDAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTADPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|257454808|ref|ZP_05620059.1| tRNA pseudouridine synthase A [Enhydrobacter aerosaccus SK60] gi|257447741|gb|EEV22733.1| tRNA pseudouridine synthase A [Enhydrobacter aerosaccus SK60] Length = 268 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + IE+ G+ Y GWQRQ+ SIQ +E A+ + E + V AGRTD+GVHA +AH Sbjct: 6 YAISIEFIGTRYRGWQRQQEVDSIQQHVEAALSKIANEPIEVIAAGRTDAGVHASNMIAH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P +A N+ L D I++ + ++ +FHARFSAI R Y Y + Sbjct: 66 FQTSATRQPYNWLRAANSLLP--DDIAVRWIQVMPAEFHARFSAIARRYRYITLNHPFRP 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + L+ + M+ AA +L G HDFT+FR+ CQ++ P+R + + G L Sbjct: 124 AILNQQITHEYAPLNVQLMQQAATYLEGTHDFTSFRAASCQSNQPVRHVHFAKLIQHGEL 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A FLH +R+ +G+L +G G+ +E L +++R A +GLYF + Sbjct: 184 LVLDIQADGFLHHMVRNIMGTLFEIGRGEKPVAWIEALLLSKNRSLAAATASADGLYFIN 243 Query: 244 VEY 246 Y Sbjct: 244 ALY 246 >gi|322435303|ref|YP_004217515.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX9] gi|321163030|gb|ADW68735.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX9] Length = 258 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 131/262 (50%), Gaps = 20/262 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + M + Y+G+ Y GWQ Q ++QG + A+ L+TGE V+ G+GRTD+GVHAL Q Sbjct: 1 MRYWKMTLAYDGTAYHGWQVQPGLPTVQGRLAAALKLLTGETVLPQGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L L +ALN L I +L++ V+ +FHAR A+R++Y YR+ R Sbjct: 61 VVSFGLEAPIPGENLLRALNRALP--GAIRVLSVEAVEAEFHARRGAVRKTYEYRLFPRV 118 Query: 121 --------APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--------IHCQ 164 +P+ W P +D AA+ ++G HDF++F + + Sbjct: 119 GVRPERICSPML--AAYVWDCPWEIDLGRAEAAARVILGEHDFSSFAASDPDRTERLSGV 176 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 S +RT+ + L+ RVV FLH +R+ VG G+ +++ L A Sbjct: 177 ERSNVRTVYESGWSELDGLMVYRVVGNGFLHHMVRNLVGCFVDAACGRTEVSEVAGILAA 236 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 +DR CG AP GL+ VEY Sbjct: 237 KDRTACGATAPASGLFLVGVEY 258 >gi|327462829|gb|EGF09151.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1057] Length = 249 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRH 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLFKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|324992392|gb|EGC24313.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK405] gi|324996086|gb|EGC27997.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK678] gi|327460621|gb|EGF06956.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1] gi|327472350|gb|EGF17781.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK408] gi|327488890|gb|EGF20688.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1058] Length = 249 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMLVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|319939850|ref|ZP_08014205.1| tRNA pseudouridine synthase A [Streptococcus anginosus 1_2_62CV] gi|319810861|gb|EFW07180.1| tRNA pseudouridine synthase A [Streptococcus anginosus 1_2_62CV] Length = 249 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ V+VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTKINRGKPVIVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V++ FH+R+ + Y + + Sbjct: 61 QVIHFDLPQKRDEEKLRFALDT--QTPEDIDFISVEEVNEDFHSRYWKHSKIYEFIVDVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD ++ A L G HDFT F + + +RTI D Sbjct: 119 RPKNPMMRHYATHFPYPLDISLIKNAIAKLEGTHDFTGFTASGTSVENKVRTITEARLDF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+G+ +++ L ++R GP A P Sbjct: 179 DEKRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKNRHLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|221068666|ref|ZP_03544771.1| tRNA pseudouridine synthase A [Comamonas testosteroni KF-1] gi|220713689|gb|EED69057.1| tRNA pseudouridine synthase A [Comamonas testosteroni KF-1] Length = 276 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 126/255 (49%), Gaps = 16/255 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTDSGVH L QV Sbjct: 1 MRIALGVSYNGQAYRGWQSQPDGNTVQDKLEAALGRFAAQEVSTICAGRTDSGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ--FHARFSAIRRSYLYRIITR 119 HFD + P + N +L D + D FH+R A R Y Y ++ Sbjct: 61 VHFDTGLQRTPNSWVRGTNTFLP-KDIAVQWAAEVADGPDGFHSRACATARRYAYVLLQS 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++++GR + ++LD + MR AA L+G HDF++FR+ CQA SP++T+ D++ Sbjct: 120 PVRPSVDQGRVGWVFQTLDAQRMRAAADLLLGEHDFSSFRAAGCQAKSPVKTLRRIDIHY 179 Query: 180 FG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 +FLH IR+ +G L VG G +++ L+A+ Sbjct: 180 RPAGQAPMRDTQMQCGYWRFEFEGSAFLHHMIRNIMGCLIYVGQGSKPVEWMQQVLEARS 239 Query: 227 RKECGPLAPPEGLYF 241 R+ P P+GLYF Sbjct: 240 REVAAPTFSPDGLYF 254 >gi|221217465|ref|ZP_03588936.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a] gi|223889178|ref|ZP_03623767.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b] gi|225549711|ref|ZP_03770676.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a] gi|226321158|ref|ZP_03796699.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805] gi|221192743|gb|EEE18959.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a] gi|223885427|gb|EEF56528.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b] gi|225369671|gb|EEG99119.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a] gi|226233450|gb|EEH32190.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805] Length = 246 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQIITFDIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L V FH RFSA +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSDNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L N+ A+ L+G+HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ + V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLERVYY 245 >gi|329666723|gb|AEB92671.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii DPC 6026] Length = 263 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALNA + I DT+ IVD+ FH ++S + Y Y + + Sbjct: 64 IHFDYPGKEIPAKNMMLALNALMPI-DTV-FFESEIVDEDFHVQYSTKGKWYRYIVDQHR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ + Sbjct: 122 FTDPFNRFYTGHYPYPLDISLMQQAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITPD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 S I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP G Sbjct: 182 SDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEVRTTAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLQQVFYE 250 >gi|238923689|ref|YP_002937205.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] gi|238875364|gb|ACR75071.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] Length = 276 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y +I+ Y+G+ Y GWQ QK+ +IQG ++ + + G+ V V G+GRTD+GVHA+ QVA Sbjct: 30 YKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDAGVHAVGQVA 89 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + + + + LN +L I++ ++S V +FHAR++A+ ++Y+Y I T Sbjct: 90 SFHMPKHFSKDEIFIWLNEHLPAD--IAVTDISNVPDRFHARYNAVSKTYVYTIHTGIVS 147 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + K LD + M+ AA +L+G HDF F S +RTI D+ G Sbjct: 148 DVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNRHMKKSTVRTIFSIDIEKTGA 207 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I I FL IR G+L VGDG+ + + L ++DR + G AP GL + Sbjct: 208 DIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMEILASKDRAQAGYTAPACGLRLE 267 Query: 243 SVEY 246 V+Y Sbjct: 268 RVDY 271 >gi|325695572|gb|EGD37472.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK150] Length = 249 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|190575294|ref|YP_001973139.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia K279a] gi|229558000|sp|B2FNZ6|TRUA_STRMK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190013216|emb|CAQ46850.1| putative tRNA pseudouridine synthase A [Stenotrophomonas maltophilia K279a] Length = 256 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 13/246 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E+A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLEQALSSVADTPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD R W+ L ++ +I++ V FHARFSA R Y YR Sbjct: 61 VVHFDTDVVRDPRAWM-------LGTTTRLPRSIAVRWCVPVADDFHARFSARARRYRYR 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ R+ AL++ ++LD M A Q L+G +DF+ FRS+ CQA R + Sbjct: 114 LLNREVRPALDRQTLSWERRALDETLMHAAGQALIGENDFSAFRSVQCQALHARRELQSL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V+ G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP AP Sbjct: 174 QVSRQGEVIEVAVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAP 233 Query: 236 PEGLYF 241 P+GL F Sbjct: 234 PQGLVF 239 >gi|311111209|ref|ZP_07712606.1| tRNA pseudouridine synthase A [Lactobacillus gasseri MV-22] gi|311066363|gb|EFQ46703.1| tRNA pseudouridine synthase A [Lactobacillus gasseri MV-22] Length = 263 Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALNA + I DT+ + IVD FH ++S + Y Y + + Sbjct: 64 IHFDYPGKEIPAKNMMLALNALMPI-DTV-FFDSEIVDSDFHVQYSTKGKWYRYIVDQHR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ S Sbjct: 122 FTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITSD 181 Query: 181 GNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I + FL+ +R VG+L +G+ K D+ + L A+DR+E AP G Sbjct: 182 PDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLQHVFYE 250 >gi|189423417|ref|YP_001950594.1| tRNA pseudouridine synthase A [Geobacter lovleyi SZ] gi|189419676|gb|ACD94074.1| tRNA pseudouridine synthase A [Geobacter lovleyi SZ] Length = 262 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +II+Y+G+ Y GWQ Q NG SIQ ++E A+ + G+ V V +GRTD+GVHA+ A F Sbjct: 22 LIIQYDGTNYCGWQEQTNGPSIQETVELALAKILGQRVRVQSSGRTDAGVHAVAMPAVFR 81 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +P+ +N +L D I+I + V F A A ++Y Y I Sbjct: 82 -TESTIPLKAFVDGVNCHLP--DDIAIQSAVEVPTGFRAIGGARSKTYRYTIYNAPVRSP 138 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L + +W + + LD + M+ AA + VG HDF FR +C A + R ID +N G LI Sbjct: 139 LNRRTSWHVREQLDLQAMQQAAAYFVGEHDFAAFRGANCSAVTSRRRIDAVQINQSGPLI 198 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I V FL +R G+L VG G++ + L DR+ G APP+GL V Sbjct: 199 TIDVTGGGFLKYMVRIMAGTLVDVGRGRFAPEHVAGLLAEPDRQRGGVTAPPQGLSLLQV 258 Query: 245 EY 246 Y Sbjct: 259 IY 260 >gi|116628993|ref|YP_814165.1| tRNA pseudouridine synthase A [Lactobacillus gasseri ATCC 33323] gi|238853452|ref|ZP_04643830.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 202-4] gi|116094575|gb|ABJ59727.1| Pseudouridylate synthase [Lactobacillus gasseri ATCC 33323] gi|238833892|gb|EEQ26151.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 202-4] Length = 264 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV Sbjct: 5 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQV 64 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALNA + I DT+ + IVD FH ++S + Y Y + + Sbjct: 65 IHFDYPGKEIPAKNMMLALNALMPI-DTV-FFDSEIVDSDFHVQYSTKGKWYRYIVDQHR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ S Sbjct: 123 FTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITSD 182 Query: 181 GNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I + FL+ +R VG+L +G+ K D+ + L A+DR+E AP G Sbjct: 183 PDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTAPASG 242 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 243 LYLQHVFYE 251 >gi|225549204|ref|ZP_03770177.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 94a] gi|225370062|gb|EEG99502.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 94a] gi|312148421|gb|ADQ31080.1| tRNA pseudouridine synthase A [Borrelia burgdorferi JD1] Length = 246 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQIITFDIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L + FH RFSA +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLRYIKNSFHPRFSAQKRKYSYCILNSDNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L N+ A+ L+G+HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ + V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLERVYY 245 >gi|218249502|ref|YP_002374546.1| tRNA pseudouridine synthase A [Borrelia burgdorferi ZS7] gi|224532546|ref|ZP_03673169.1| tRNA pseudouridine synthase A [Borrelia burgdorferi WI91-23] gi|226322073|ref|ZP_03797598.1| tRNA pseudouridine synthase A [Borrelia burgdorferi Bol26] gi|226708642|sp|B7J0V1|TRUA_BORBZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1665842|emb|CAA70351.1| pseudouridylate synthase I [Borrelia burgdorferi] gi|2911585|emb|CAA11967.1| pseudouridylate synthase I [Borrelia burgdorferi] gi|218164690|gb|ACK74751.1| tRNA pseudouridine synthase A [Borrelia burgdorferi ZS7] gi|224512489|gb|EEF82867.1| tRNA pseudouridine synthase A [Borrelia burgdorferi WI91-23] gi|226232663|gb|EEH31417.1| tRNA pseudouridine synthase A [Borrelia burgdorferi Bol26] Length = 246 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQIITFDIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L V FH RFSA +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSDNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L N+ A+ L+G+HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ + V Y Sbjct: 187 IIGSSFLWKMVRSIMGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLERVYY 245 >gi|332886051|gb|EGK06295.1| tRNA pseudouridine synthase A [Dysgonomonas mossii DSM 22836] Length = 250 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 124/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG S+Q +IEKA+ + + + GAGRTD+GVHA Sbjct: 1 MRRYFIYLAYNGENYCGWQIQPNGVSVQEAIEKALTTLLRTPIAIVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD + + +L K LN+ L ISI N+ V HARF A R Y Y I T Sbjct: 61 AAHFDYEAANLDLPLLAKKLNSIL--PKDISIYNIVEVKPDAHARFDATSRLYRYYITTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + +LD + M A L DFT+F +H + TI Sbjct: 119 KDPFLYH--LKYKVHGNLDIDKMNACADILFEYEDFTSFSKLHTDVKTNNCTILAAQWEK 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + A FL +RS VG+L G GK S ++ + ++A++R E G P L Sbjct: 177 KGNDYIFTIKANRFLRNMVRSIVGTLLEAGKGKIDSGEMRRIIEAKNRGEAGISVPGHAL 236 Query: 240 YFDSVEYS 247 + + +EY+ Sbjct: 237 FLEEIEYN 244 >gi|21231977|ref|NP_637894.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767896|ref|YP_242658.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. 8004] gi|188991012|ref|YP_001903022.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. B100] gi|30913393|sp|Q8P7R5|TRUA_XANCP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81306127|sp|Q4UWD5|TRUA_XANC8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229470759|sp|B0RR81|TRUA_XANCB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21113710|gb|AAM41818.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573228|gb|AAY48638.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. 8004] gi|167732772|emb|CAP50966.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris] Length = 257 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 133/247 (53%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q +++ A+ V + V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQATLQAALSSVADAPIQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ ++++ + FHARFSA R Y Y Sbjct: 61 QVVHFDSDARREPRGWM-------LGTTARLPPSVAVRWCVPAAEDFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD + M AAQ L+G +DF FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTLSWERRPLDAQAMHTAAQALLGENDFGAFRSVQCQALHARRNLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E++V A +FLH +R+ VGSL LVG G+ + L +DR GP A Sbjct: 174 ITVQRLGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPIDWIATLLAGRDRTVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|218186563|gb|EEC68990.1| hypothetical protein OsI_37759 [Oryza sativa Indica Group] Length = 391 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 72/316 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 72 RYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGVHALSNVC 131 Query: 63 HFDLVR-------EWVPV----ILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R E +P ++ +A+N +L+ ++ I + ++ V FHAR+ A+ R Sbjct: 132 HVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHARYKALER 191 Query: 111 SYLYRIITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR+++ PL++ EK AW IP+ L+ + M+ A LVG HDF++FR+ CQA+SP+ Sbjct: 192 TYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSPM 251 Query: 170 RTIDHFDVNSF-------------------GNLIEIRVVA-------------------- 190 RT+D V G+L+ R Sbjct: 252 RTLDELSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDASSTSEQSRFE 311 Query: 191 -----------RSFLHT-QIRSF--------VGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 R F+ T + RSF VG LK VG G T+ D+E+ L + Sbjct: 312 NGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAA 371 Query: 231 GPLAPPEGLYFDSVEY 246 P+AP GLY +V+Y Sbjct: 372 PPMAPACGLYLANVKY 387 >gi|289422511|ref|ZP_06424354.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius 653-L] gi|289157083|gb|EFD05705.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius 653-L] Length = 243 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 128/240 (53%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y G+ Y GWQRQK+ IQG +E A V + V G+GRTD+GVHAL QVA+F V Sbjct: 8 VAYQGTNYCGWQRQKDSLGIQGELEYAGQKVFASKIDVTGSGRTDAGVHALGQVANFK-V 66 Query: 68 REWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 +P+ + + LN K+ I++L VD+ FH+RFSA ++Y Y+I + Sbjct: 67 ETTIPIDKIPEVLNN--KLPKDIAVLEAVEVDEDFHSRFSAHNKTYRYQIYPSRIRSPFY 124 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 K + + LD + M+ + LVG HDF F S + +R I V G+LI + Sbjct: 125 KDTCYQVKSPLDLDRMKKEVKGLVGVHDFVGFMSSGSSVKTTVREIYDAKVFEEGDLIVL 184 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + FL+ +R G+L +G G + ++ L+++DR G APP+GL+ VEY Sbjct: 185 ELTGNGFLYNMVRIIAGTLVDMGRGHIGDSMVD-ILESKDRGRAGHTAPPQGLFLKEVEY 243 >gi|145352156|ref|XP_001420422.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580656|gb|ABO98715.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 308 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 43/283 (15%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVH--GAGRTDSGVHALR 59 RY +EY+G+ + G+QRQ +++QG++++A+ TG + G+ RTD GVHALR Sbjct: 13 RYLAFLEYDGARFRGFQRQCGVAATVQGALDEALTAFTGARGAIECVGSSRTDVGVHALR 72 Query: 60 QVAHFDL-----------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 AHFD VR V L K L A +++++ + + + + +FH Sbjct: 73 NSAHFDFARTTKDGTTVEPHDGASVRRGVNYHLRK-LGAAVRVTECVRVDEM---NPKFH 128 Query: 103 ARFSAIRRSYLYRIITRQAPLA---LEKGRAWLIPKS----LDCENMRIAAQHLVGRHDF 155 AR A+ R Y Y I+ + + RAW + + L+ + MR AA L G HDF Sbjct: 129 ARHDAVARRYRYDILVGERDDGGSLFDAERAWYVRATCDGRLNVDAMRDAAAALTGTHDF 188 Query: 156 TTFRSIHCQASSPIRTIDHFDVNS------------FGNLIEIRVVARSFLHTQIRSFVG 203 ++FR+ CQASSP+RT+ DV I I V A SFL+ Q+R G Sbjct: 189 SSFRANGCQASSPVRTLTSIDVKEELTEWPAAEARGTKQKISIAVAAPSFLYHQVRLLAG 248 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +LK VG T D+++ L+A+D +AP GLY V Y Sbjct: 249 ALKAVGANDLTVKDVQELLEAKDVARAPQMAPAHGLYLADVAY 291 >gi|115487730|ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group] gi|108862288|gb|ABA96079.2| tRNA pseudouridine synthase family protein, putative, expressed [Oryza sativa Japonica Group] gi|113648859|dbj|BAF29371.1| Os12g0194800 [Oryza sativa Japonica Group] gi|215678805|dbj|BAG95242.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616774|gb|EEE52906.1| hypothetical protein OsJ_35509 [Oryza sativa Japonica Group] Length = 391 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 72/316 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 72 RYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGVHALSNVC 131 Query: 63 HFDLVR-------EWVPV----ILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R E +P ++ +A+N +L+ ++ I + ++ V FHAR+ A+ R Sbjct: 132 HVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHARYKALER 191 Query: 111 SYLYRIITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR+++ PL++ EK AW IP+ L+ + M+ A LVG HDF++FR+ CQA+SP+ Sbjct: 192 TYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSPM 251 Query: 170 RTIDHFDVNSF-------------------GNLIEIRVVA-------------------- 190 RT+D V G+L+ R Sbjct: 252 RTLDELSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDASSTSEQSRFE 311 Query: 191 -----------RSFLHT-QIRSF--------VGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 R F+ T + RSF VG LK VG G T+ D+E+ L + Sbjct: 312 NGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAA 371 Query: 231 GPLAPPEGLYFDSVEY 246 P+AP GLY +V+Y Sbjct: 372 PPMAPACGLYLANVKY 387 >gi|77919497|ref|YP_357312.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380] gi|123756611|sp|Q3A3B5|TRUA_PELCD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77545580|gb|ABA89142.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380] Length = 252 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 129/244 (52%), Gaps = 6/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ Y GWQRQ NG S+Q +E+A+ V G + +GRTD+GVHA VAHF Sbjct: 6 LIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHSLVSSGRTDAGVHARGMVAHFV 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR--QAPL 123 + + +N +L I++ + +++ FHAR+SA+ + Y Y I ++PL Sbjct: 66 TPQPLPMAAYREGVNRFLPAQ--IAVRDAALMPDDFHARYSAVGKWYRYSIYRSPVRSPL 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A +W + LD + MR AA+ LVGRHDF FR+ C A + +R + D+ Sbjct: 124 ACRF--SWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAARTTVREVFSVDIVDAEEW 181 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + V FL +R VG+L VG G ++ L RK+ G AP +GL Sbjct: 182 VYVDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLCLME 241 Query: 244 VEYS 247 V Y+ Sbjct: 242 VAYA 245 >gi|264677138|ref|YP_003277044.1| tRNA pseudouridine synthase A [Comamonas testosteroni CNB-2] gi|299530680|ref|ZP_07044095.1| tRNA pseudouridine synthase A [Comamonas testosteroni S44] gi|262207650|gb|ACY31748.1| tRNA pseudouridine synthase A [Comamonas testosteroni CNB-2] gi|298721196|gb|EFI62138.1| tRNA pseudouridine synthase A [Comamonas testosteroni S44] Length = 276 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 16/255 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTDSGVH L QV Sbjct: 1 MRIALGVSYNGQAYRGWQSQPDGNTVQDKLEAALGRFAAQEVSTICAGRTDSGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD--KQFHARFSAIRRSYLYRIITR 119 HFD + P + N +L D + D FH+R A R Y Y ++ Sbjct: 61 VHFDTELQRAPNSWVRGTNTFLP-KDIAVQWAAEVADGPNGFHSRACATARRYAYVLLQS 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 +++ GR + ++LD + MR AA L+G HDF++FR+ CQA SP++T+ D++ Sbjct: 120 PVRPSVDHGRVGWVFQALDAQRMRAAADLLLGEHDFSSFRAAGCQAKSPVKTLRRIDIHY 179 Query: 179 --------SFGNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 G + +FLH IR+ +G L VG G +++ L+A+ Sbjct: 180 RPAGQAPMRDGQMECGYWRFEFEGSAFLHHMIRNIMGCLIYVGQGSKPVEWMQQVLEARS 239 Query: 227 RKECGPLAPPEGLYF 241 R+ P P+GLYF Sbjct: 240 REVAAPTFSPDGLYF 254 >gi|262282044|ref|ZP_06059813.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA] gi|262262498|gb|EEY81195.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA] Length = 249 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FHAR++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVERVSDDFHARYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRYYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|332365537|gb|EGJ43297.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1059] Length = 249 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMLVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|260662783|ref|ZP_05863677.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN] gi|260552864|gb|EEX25863.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN] Length = 258 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 133/252 (52%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q ++E+A+ + + ++V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQVQPGERTVQQALERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSLPLD--VLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID V Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 ASGLYLVEVTYD 250 >gi|261380083|ref|ZP_05984656.1| tRNA pseudouridine synthase A [Neisseria subflava NJ9703] gi|284797300|gb|EFC52647.1| tRNA pseudouridine synthase A [Neisseria subflava NJ9703] Length = 281 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS ++GWQ+Q ++Q ++E+A+ + GE + AGRTD+GVHA QV Sbjct: 14 RWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALTSIAGEQINTIVAGRTDTGVHATAQV 73 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L D +++L V F+ARF A R Y Y + + Sbjct: 74 VHFDTSVSRPEQAWVRGVNAHLP--DGVAVLLAQKVAPHFNARFDAYGRHYRYLLESSPV 131 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 132 CSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYRASISGTP 191 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + +FLH +R+ +G+L VG G+ + + + A+ R + P +GLY Sbjct: 192 RYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFQSIFYARSRLKAPPTFMSDGLYL 251 Query: 242 DSVEY 246 V+Y Sbjct: 252 TGVDY 256 >gi|167767771|ref|ZP_02439824.1| hypothetical protein CLOSS21_02306 [Clostridium sp. SS2/1] gi|167710510|gb|EDS21089.1| hypothetical protein CLOSS21_02306 [Clostridium sp. SS2/1] gi|291558888|emb|CBL37688.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2] Length = 252 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+GY GWQ Q N +++G + K I +TGE + V GA RTDSGVHAL Sbjct: 1 MKRVKLIVAYDGTGYCGWQVQPNEITVEGVLNKHISELTGEDIKVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + KALNA ++ + I I + V +H RF R++Y Y + Sbjct: 61 VAVFDTESRIPGEKMAKALNA--RLPEDIIIQDSKEVPLDYHPRFQDTRKTYEYTFYNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E M+ AA + +G H F + S Q +S +R I DV Sbjct: 119 YDNPVTSRHHHFVYVPLDVEKMKEAASYFLGEHCFISMCSSKAQVTSYVREIYECDVTQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I++RV FL+ +R G+L VG GK +++ L +++R GP P +GL Sbjct: 179 GRYIKMRVTGSGFLYNMVRLMAGTLLEVGRGKQEPQWVKEILASKERVTPGPKLPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LIQIEY 244 >gi|160900673|ref|YP_001566255.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1] gi|238687164|sp|A9BNH5|TRUA_DELAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160366257|gb|ABX37870.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1] Length = 282 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 129/262 (49%), Gaps = 24/262 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G++IQ +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A R Y Y ++ Sbjct: 61 VHFDTPLDRAPFSWVRGTNTFLP--PDIAVQWAQPVPDAFHSRACATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-- 179 ++E GR + +LD + M+ AA+HL+G HDF++FR+ CQA SP++T+ + Sbjct: 119 RPSVEAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVKTLHRLSITRRM 178 Query: 180 FGNLIEIRVVA--------------------RSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 G+ ++ + +FLH +R+ +G L +G G + ++ Sbjct: 179 AGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGTYAPQWMQ 238 Query: 220 KALQAQDRKECGPLAPPEGLYF 241 + L A+ R P P+GLYF Sbjct: 239 QVLDARSRDAAAPTFSPDGLYF 260 >gi|291528184|emb|CBK93770.1| pseudouridylate synthase I [Eubacterium rectale M104/1] Length = 254 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 130/244 (53%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y +I+ Y+G+ Y GWQ QK+ +IQG ++ + + G+ V V G+GRTD+GVHA+ QVA Sbjct: 8 YKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDAGVHAVGQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + + + + LN +L I++ ++S V +FHAR++A+ ++Y+Y I T Sbjct: 68 SFHMPKHFSKDEIFIWLNEHLPAD--IAVTDISNVPDRFHARYNAVSKTYVYTIHTGIVS 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + K LD + M+ AA +L+G HDF F S +RTI D+ G Sbjct: 126 DVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNKHMKKSTVRTIFSIDIEKTGA 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I I FL IR G+L VGDG+ + L ++DR + G AP GL + Sbjct: 186 DIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMGILASKDRAQAGYTAPACGLSLE 245 Query: 243 SVEY 246 V+Y Sbjct: 246 RVDY 249 >gi|312149333|gb|ADQ29404.1| tRNA pseudouridine synthase A [Borrelia burgdorferi N40] Length = 246 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 122/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQIITFDIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L V FH RFSA +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSDNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L N+ A+ L+G HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLSISNLNQMAKTLIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ + V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLERVYY 245 >gi|297620993|ref|YP_003709130.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] gi|297376294|gb|ADI38124.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 5/239 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + I Y+G+ + GWQ K G SI+G ++KA+ ++ E + ++GA RTD+GVHAL Q+A+ Sbjct: 7 FLLTIAYDGTPFLGWQETKEGPSIEGELKKALRIILKEEIKLNGASRTDAGVHALGQLAN 66 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F ++ L K++NA L I + + V+ FHA + + Y YR+ Sbjct: 67 FHTTKKPHLFTLLKSINALL--PGEIKVTAIEEVEASFHATLNNTGKQYRYRLSFGPVQF 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDVNSFG 181 + R W IP LD E MR+AA+ L G HDF F ++ + S IRT+ + Sbjct: 125 PHVRHREWHIPGKLDIEAMRLAAKSLEGTHDFKAFCNVKKNDTYDSTIRTLSKLSLAELE 184 Query: 182 N-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N +E+ + FL+ R+ VG+L +G + L+K + DR + GP AP GL Sbjct: 185 NDTLEVIMEGNHFLYKMARNIVGTLVYIGKKRIQLNTLKKLVLNGDRTQLGPTAPAHGL 243 >gi|302390990|ref|YP_003826810.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501] gi|302203067|gb|ADL11745.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501] Length = 244 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 134/247 (54%), Gaps = 5/247 (2%) Query: 2 IRYC-MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY II Y+G+ Y+G+Q Q + +IQ +E+++ ++T E V AGRTD GVHA Q Sbjct: 1 MRYLKAIIAYDGTNYYGFQHQPDVPTIQDELEESLRILTKEKNKVIVAGRTDRGVHAQNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V +F + P+ L A+ + + I I + V+ FHAR+ A + Y YRI+ + Sbjct: 61 VINF---KTESPIPLENIRFAWNNCLPNDILIKEVEDVNADFHARYDAEGKIYEYRILNQ 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ + I + LD M AA+ L+G +DF++F++ + +RTI +V Sbjct: 118 PLPSVFKRNYTYHIKEELDSAAMAEAAECLIGTYDFSSFQASGSNVQTTVRTIQQAEVTQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L+ R+ FL+ +R VG+L VG G+W + + ++A+DR GP AP +GL Sbjct: 178 QDRLVIFRIEGDGFLYNMVRIIVGTLIKVGTGEWEVPRMSRIIEAEDRLAAGPTAPAQGL 237 Query: 240 YFDSVEY 246 V+Y Sbjct: 238 RLIKVKY 244 >gi|194017442|ref|ZP_03056053.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061] gi|194010714|gb|EDW20285.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061] Length = 247 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 126/241 (52%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+ + G+Q Q ++Q IE A+ + E++ + +GRTDSGVHA QV HFD Sbjct: 7 VSYDGTHFKGYQVQPGQRTVQTEIESALARMHKQDELIPIVASGRTDSGVHAKGQVIHFD 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALN+ L D I +L VD+ FHARFS + + Y Y++ T Sbjct: 67 TPLSIPMERWPFALNSLL--PDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTETHQNVF 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A P LD + MR AA HL+G HDFT+F + + + +R I + + + +E Sbjct: 125 TRQYACHFPYRLDADKMREAAGHLIGTHDFTSFCAANTEVQDKVREIYTLEWKNVSDGLE 184 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 +RV FL+ +R G+L +G GK+ +++ L A++R+ G AP GLY V Sbjct: 185 MRVRGNGFLYNMVRIIAGTLLEIGSGKFHPEEIKAMLAARNREAAGKTAPSHGLYLWEVF 244 Query: 246 Y 246 Y Sbjct: 245 Y 245 >gi|295692190|ref|YP_003600800.1| tRNA pseudouridine synthase a [Lactobacillus crispatus ST1] gi|295030296|emb|CBL49775.1| tRNA pseudouridine synthase A [Lactobacillus crispatus ST1] Length = 262 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 137/249 (55%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ QV Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQRVIVQGSGRTDAGVHAVGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + A+N+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 64 IHFDYPGKTIPANRMILAMNSMMPTD--IIFDDCQIVDENFHARYSIKGKWYRYRVSLDH 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P LD E M++AAQ L+G+HDFT+F + Q + +RTI + ++ + Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSFAASGGQIENKVRTIYYVNITKD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A G Sbjct: 182 EKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQTAHASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYD 250 >gi|15594358|ref|NP_212146.1| tRNA pseudouridine synthase A [Borrelia burgdorferi B31] gi|3915171|sp|P70830|TRUA_BORBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2687883|gb|AAC66394.1| pseudouridylate synthase I (hisT) [Borrelia burgdorferi B31] Length = 246 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA +Q+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQIITFDIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L V FH RFSA +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSDNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L N+ A+ L+G+HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ + V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLERVYY 245 >gi|302388052|ref|YP_003823874.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] gi|302198680|gb|ADL06251.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] Length = 341 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 2/227 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R MI+ Y+G+ Y GWQ Q NG +I+ + K + + E + V GA RTDSGVH+ Sbjct: 1 MKRVKMIVAYDGTNYCGWQIQNNGITIEEVLNKELTSLLKEPITVIGASRTDSGVHSEGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN ++ D I IL V +H R ++Y Y+I+ R+ Sbjct: 61 VAVFDTENRMPADKICFALNQ--RLPDDIRILQSQEVRPDYHPRKQNCVKTYEYKIMNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + ++ LD E MR +LVG HDF +F + QA +RTI D+ Sbjct: 119 IEVPTLRLYSYFCYFPLDVERMREGGAYLVGEHDFKSFCTARGQAEETVRTIYSLDIEKS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 G+LI IR+ FL+ +R G+L VG G + + +E+ L A+DR Sbjct: 179 GDLITIRIKGSGFLYNMVRIIAGTLMKVGMGVYPPSHVEEILDARDR 225 >gi|268318882|ref|YP_003292538.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii FI9785] gi|262397257|emb|CAX66271.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii FI9785] Length = 263 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALNA + I DT+ IVD+ FH ++S + Y Y + + Sbjct: 64 IHFDYPGKEIPAKNMMLALNALMPI-DTV-FFESEIVDEDFHVQYSTKGKWYRYVVDQHR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 122 FTDPFNRFYTGHYPYPLDISLMQQAARDLIGEHDFTSFAASGGQIVDKVRTIYYVNITPD 181 Query: 181 GNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP G Sbjct: 182 PDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNQKRPVDDIPRVLKAKDRQEVRTTAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLQHVFYE 250 >gi|118602946|ref|YP_904161.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567885|gb|ABL02690.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 247 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + + Y G+ + GWQ QK N ++Q +E+A+ V V V +GRTD+GVHA Q Sbjct: 1 MKIALGVAYLGTNFHGWQCQKPNIRTVQQVVEQALSSVANHPVRVFCSGRTDAGVHATCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + + NA L SD ++ + V+ FHARFSAI R Y Y+I + Sbjct: 61 VIHFETNIKRENKVWLFGGNANLP-SD-VNFTWVKHVNDNFHARFSAIARQYNYKIHNTK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + K LD M A+++L+G+H+F+ FR CQA S I+TI+ +N Sbjct: 119 VRCSIITAHSLWESKKLDIMAMNKASKYLIGKHNFSAFRGSLCQAKSSIKTIEFIKLNKC 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + + A +FLH +R+ VG+L VG G+ + +++ L + RK+ P AP GLY Sbjct: 179 DDNILLDIKADAFLHHMVRNIVGTLLKVGKGEKSIEWVKEILDNKQRKQAAPAAPSHGLY 238 Query: 241 FDSVEYS 247 F YS Sbjct: 239 FIKAFYS 245 >gi|242083078|ref|XP_002441964.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor] gi|241942657|gb|EES15802.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor] Length = 387 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 149/317 (47%), Gaps = 73/317 (23%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 67 RYLVAVEYIGTRFSGSQQQPNQRTVVGVLEEAFHRFIGQPVSIFCSSRTDAGVHALSNVC 126 Query: 63 HFDLVR-----------EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L K I + ++ V FHAR+ A+ R Sbjct: 127 HVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKNEGDIMVTDVRCVAPDFHARYKALER 186 Query: 111 SYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR+++ ++ E AW I + LD + M+ A LVG HDF++FR+ CQA+SP+ Sbjct: 187 TYHYRLLSGPESTSVFETNSAWHISEDLDIQAMKKACSILVGHHDFSSFRAAGCQANSPM 246 Query: 170 RTIDHFDV-------------------NSFGNLIEIR----------------------- 187 RT+D V +S G+L+ R Sbjct: 247 RTLDELSVTEVFPFMFFPSSVERSQLESSNGSLVYSRTPDIESSGKGSDLCCTSSVKSEL 306 Query: 188 ----------------VVAR--SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 V AR SFL+ Q+R VG LK VG G T+ D+E+ L A+ Sbjct: 307 ENGEDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTA 366 Query: 230 CGPLAPPEGLYFDSVEY 246 +AP GLY +V+Y Sbjct: 367 APRMAPAYGLYLANVKY 383 >gi|317497062|ref|ZP_07955389.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316895607|gb|EFV17762.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+GY GWQ Q N +++G + K I +TGE + V GA RTDSGVHAL Sbjct: 1 MKRVKLIVAYDGTGYCGWQVQPNEITVEGVLNKHISELTGEDIKVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + KALNA ++ + I I + V +H RF R++Y Y + Sbjct: 61 VAVFDTESRIPGEKMAKALNA--RLPEDIIIQDSKEVPLDYHPRFQDTRKTYEYTFYNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E M+ AA + +G H F + S Q +S +R I DV Sbjct: 119 YDNPVTSRHHHFVYVPLDVEKMKEAASYFLGEHCFISMCSSKAQVTSYVREIYECDVTQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L VG GK +++ L +++R GP P +GL Sbjct: 179 GRYITMRVTGSGFLYNMVRLMAGTLLEVGRGKQEPQWVKEILASKERVTPGPKLPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LIQIEY 244 >gi|302669997|ref|YP_003829957.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus B316] gi|302394470|gb|ADL33375.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus B316] Length = 262 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 123/245 (50%), Gaps = 5/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ Y GW Q + ++I+G + +AI +TGE V V GA RTD+GVHA V Sbjct: 6 RIMLTVSYDGTAYNGWAEQTSTPNTIEGELNRAIERLTGEPVHVIGASRTDAGVHAYGNV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD ALN ++ I I+N V FH R ++Y YRI Q Sbjct: 66 AVFDTASSIPGDRFVFALNH--ELPQDIRIVNSREVATSFHPRHCDTEKTYEYRIFNSQI 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++ LD M AA +LVG HDFT+F ++ QA S +RTI V G Sbjct: 124 MDPTKRFYTCHFSMPLDIGRMNAAAHYLVGEHDFTSFCNVESQALSHVRTIKDIRVTRNG 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V FL+ +R G+L +G GK T +++ L + R GP AP EGL+ Sbjct: 184 DEVVISVTGNGFLYNMVRIIAGTLMQIGRGKGTPAEVKDILDKKYRGAAGPTAPAEGLFL 243 Query: 242 DSVEY 246 VEY Sbjct: 244 --VEY 246 >gi|331085595|ref|ZP_08334679.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407482|gb|EGG86984.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 239 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 123/242 (50%), Gaps = 5/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M I Y+G GY GWQR N +IQG+IE+ + + G V + G+GRTD+GVHA QVAH Sbjct: 1 MTIAYDGGGYKGWQRLTNEPGTIQGTIERVLSKIEGSPVKISGSGRTDAGVHAKGQVAHA 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L P +L + LN L + I I + V + FH+R+SA+ + Y YRI R Sbjct: 61 FLKTNEDPELLRQELNRML--PEDIRICLVESVSQSFHSRYSAVSKVYEYRIDQRSRADV 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + P LD + MR AA HL G HDF +F + + +RTI D+ + Sbjct: 119 FTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSFTD--NKEADSVRTIFSIDMKEENEKL 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R G+L VG+G T + +A +DR G LAP GL V Sbjct: 177 VLAFRGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDRSLTGFLAPAHGLCLREV 236 Query: 245 EY 246 Y Sbjct: 237 NY 238 >gi|296877377|ref|ZP_06901416.1| tRNA-pseudouridine synthase I [Streptococcus parasanguinis ATCC 15912] gi|296431616|gb|EFH17424.1| tRNA-pseudouridine synthase I [Streptococcus parasanguinis ATCC 15912] Length = 251 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + L G V VHGAGRTDSGVHAL Sbjct: 4 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLTRLNQGTPVTVHGAGRTDSGVHALG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I + + V FH+R+ ++Y + + Sbjct: 64 QVIHFDLPQERDEEKLRFALDT--QTPEDIDFIRVEQVAADFHSRYKKHSKTYEFIVDYG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD E M+ A Q L G HDFT F + +RTI + Sbjct: 122 RPKNPMMRHYATHYPYPLDVEKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTITEARLVE 181 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ + + FL+ QIR+ VG+L +G+ + ++ L+ +DR GP A P Sbjct: 182 DAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNDRMPIEQIDLILEQKDRNLAGPTAAPN 241 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 242 GLYLKEIRYE 251 >gi|157150719|ref|YP_001449723.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis substr. CH1] gi|189030148|sp|A8AVB3|TRUA_STRGC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157075513|gb|ABV10196.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis substr. CH1] Length = 249 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDGEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|206889178|ref|YP_002249342.1| tRNA pseudouridine synthase A [Thermodesulfovibrio yellowstonii DSM 11347] gi|238057737|sp|B5YGE4|TRUA_THEYD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206741116|gb|ACI20173.1| tRNA pseudouridine synthase A [Thermodesulfovibrio yellowstonii DSM 11347] Length = 254 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 127/257 (49%), Gaps = 14/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ M I+Y+G+ YFGWQRQ+ G +IQ +IE+ + + + + GAGRTD+GVHAL Q Sbjct: 1 MVNIKMTIQYDGTNYFGWQRQRKGRTIQATIEECLRKIFQREIKIRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + IL K LN+ L + I I+ L V+ FH + S R+SY+Y + + Sbjct: 61 VATFKAELKMSLDILKKVLNSLL--PNDIKIIKLENVEDSFHPQHSVKRKSYIYYLCFDE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----- 175 + W P LD M A G DFT F S + IRT+ F Sbjct: 119 ECSCFIQRYVWHYPWKLDLSLMEEALSLFTGTKDFTAF-SGSTDVKNKIRTVHDFTMQLL 177 Query: 176 ------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 D+ GN I+ R+ A FL +R+ VG + +G GK +++A ++ R Sbjct: 178 TKLCFMDMCLNGNFIKFRIEADGFLRYMVRNLVGCIIEIGKGKLRIESIQEAFESGKRPS 237 Query: 230 CGPLAPPEGLYFDSVEY 246 AP GL+ + V Y Sbjct: 238 TMQTAPSNGLFLEKVIY 254 >gi|331268447|ref|YP_004394939.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] gi|329124997|gb|AEB74942.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] Length = 246 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 130/242 (53%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+GS Y GWQ+QK+ ++Q IE+AI +T + G RTD+GVHA VA+F Sbjct: 7 LIIEYDGSNYSGWQKQKHSITVQQKIEEAISQITKTDTEIIGCSRTDAGVHARNFVANFI 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P A+N+ K+ I I S V FHARF + + Y+Y I+ R+ P + Sbjct: 67 TNSSVPPSKFKYAINS--KLPKDIVIKKSSEVSLDFHARFHSKGKKYVYTILNREEPPTI 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ + K L+ + M+ A+++ +G H+F +F + S +RTI + DV ++I Sbjct: 125 DRNVMYHFNKDLNVDAMKEASKYFIGSHEFDSFYKKSGSSVKSTLRTIYYCDVTKCEDVI 184 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V+ FL+ +R G+L G G+ +++ + A+DR+ G PP+GL V Sbjct: 185 KFTVIGEGFLYNMVRIMAGTLIEAGIGRIKPEEIKFIILAKDRERAGRSLPPQGLCLQEV 244 Query: 245 EY 246 Y Sbjct: 245 LY 246 >gi|322381099|ref|ZP_08055102.1| tRNA pseudouridine synthase A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154675|gb|EFX46946.1| tRNA pseudouridine synthase A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 134/247 (54%), Gaps = 11/247 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y G+Q Q +G+++Q +E+AI ++TGE V + +GRTD+GVHA QV +F L Sbjct: 8 LSYDGTSYSGFQTQPDGNTVQDQLEEAIHMLTGEKVKITSSGRTDAGVHARGQVVNF-LT 66 Query: 68 REWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 +PV C ALN+ ++ I + V FH+R SA R++Y Y I T + P Sbjct: 67 SSRIPVDRWCLALNS--RLPRDIVVYEAEEVSLTFHSRKSAKRKTYCYEIRTSRFPDVFH 124 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN---- 182 + P L+ E M+ A +G HDFT+F + + +RTI + + Sbjct: 125 RAFEVHYPTPLNIEAMKEALSCFIGTHDFTSFCTTRTTMENRVRTIYEARLEYLPDQDDP 184 Query: 183 ---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI+I + FL+ +R VG++ VG+GK S+++ L A+DR++ GP A +GL Sbjct: 185 ARGLIQIYLTGSGFLYNMVRIIVGTILQVGEGKEKSSEIPVILAAKDRRKAGPTAMAKGL 244 Query: 240 YFDSVEY 246 VEY Sbjct: 245 TLWKVEY 251 >gi|152973988|ref|YP_001373505.1| tRNA pseudouridine synthase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022740|gb|ABS20510.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 126/251 (50%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 1 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I+ + ++FHAR+ +++ Y YR+ Sbjct: 61 QVIHFDTPLSLEEWQ---WGNALNTLL--PDDIVIVQVEKKTEEFHARYGVVKKEYRYRV 115 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P +D + +R A + +G HDFT+F S +RTI D Sbjct: 116 LLSKTADVFRRNYVYQYPYPIDIQLIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEID 175 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+ + R V FL+ +R VG+L VG GK + + L QDR+ G + P Sbjct: 176 LFEQGDELVFRFVGNGFLYNMVRIIVGTLLSVGQGKVDPDSIPEILAKQDRRFAGKMVPG 235 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 236 HGLYLWQVNYN 246 >gi|282920794|ref|ZP_06328512.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C427] gi|282315209|gb|EFB45593.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C427] Length = 264 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G++ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRYEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|167759303|ref|ZP_02431430.1| hypothetical protein CLOSCI_01650 [Clostridium scindens ATCC 35704] gi|167663177|gb|EDS07307.1| hypothetical protein CLOSCI_01650 [Clostridium scindens ATCC 35704] Length = 244 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGSRYQGWQRQATTDNTIQFVLEWSIGKLVGYRVHVDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L +LN YL + I I+ + +V FHAR SA + Y Y I R Sbjct: 61 QVASVKLSKLYDTKELKDSLNRYL--PEDIRIVKVELVKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A Q+L+G +FT+F + + PIR I + + S Sbjct: 119 EKPDVFSRRYCYHYPEKLDIEAMRDAVQYLIGPKNFTSF-TDDKECKDPIRRIINIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I FL+ +R G+L +G GK ++ L + A+DR G LAP GL Sbjct: 178 TGEKVRITYYGTGFLYHMVRILTGTLLEIGTGKRDASMLPVVIAAEDRCLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|15605190|ref|NP_219976.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D/UW-3/CX] gi|8134751|sp|O84469|TRUA_CHLTR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3328897|gb|AAC68063.1| Pseudouridylate Synthase I [Chlamydia trachomatis D/UW-3/CX] gi|296436918|gb|ADH19088.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11222] gi|297748594|gb|ADI51140.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-EC] gi|297749474|gb|ADI52152.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-LC] Length = 267 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 127/242 (52%), Gaps = 5/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--- 64 I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Q+AHF Sbjct: 9 IAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQGQIAHFHCP 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + K LNA L I I + + D+ FH+RFSAI + Y Y + PL Sbjct: 69 DHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPKPLP 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D++ +L+ Sbjct: 127 HHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLDLSEQEHLV 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ VG+L +G GK+ L L +DR++ P APP GL V Sbjct: 187 TVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPPYGLSLHHV 246 Query: 245 EY 246 Y Sbjct: 247 CY 248 >gi|226322882|ref|ZP_03798400.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758] gi|225208668|gb|EEG91022.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758] Length = 256 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 120/247 (48%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KAI +TGE + V GA RTDSGVHA Sbjct: 9 MRRIRLTVAYDGTNYCGWQIQPNGITIEEVLNKAICKLTGEEIQVIGASRTDSGVHARGN 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD ALN ++ I ++ VD +H R+ ++Y Y II + Sbjct: 69 IAVFDTESRIPAERFSYALNQ--RLPKDIVVVKSDEVDLNWHPRYQDTLKTYEYHIINTK 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + + LD MR A +L G HDF F I A + +RTI + Sbjct: 127 VPIPTERLYNYFVSFDLDVGQMRRGAAYLEGEHDFAPFCCIRTNAKTTVRTITDLQILQS 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R G L VG G + +++ L+ +R APP+GL Sbjct: 187 GEHITIRITGNGFLYNMVRIIAGVLVRVGRGFYEPEKVKELLEGGERTREAVTAPPQGLC 246 Query: 241 FDSVEYS 247 + Y Sbjct: 247 LMEIRYQ 253 >gi|282852680|ref|ZP_06262022.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 224-1] gi|282556422|gb|EFB62042.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 224-1] Length = 258 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 6/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV Sbjct: 5 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQV 64 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALNA + I DT+ + IVD FH ++S + Y Y + + Sbjct: 65 IHFDYPGKEIPAKNMMLALNALMPI-DTV-FFDSEIVDSDFHVQYSTKGKWYRYIVDQHR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ S Sbjct: 123 FTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITSD 182 Query: 181 GNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I + FL+ +R VG+L +G+ K D+ + L A+DR+E AP G Sbjct: 183 PDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTAPASG 242 Query: 239 LYFDSV 244 LY V Sbjct: 243 LYLQHV 248 >gi|121611771|ref|YP_999578.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2] gi|166229848|sp|A1WSF3|TRUA_VEREI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121556411|gb|ABM60560.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2] Length = 272 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 14/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I YNG Y GWQ Q + ++Q ++E A+ V AGRTD+GVH L QV Sbjct: 1 MRMALGISYNGQAYCGWQSQPSVRTVQDALEAALGRFATHPVSTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + N +L I++ V FHAR SA+ R Y Y ++ Sbjct: 61 VHFDTPLDRPAASWVRGTNGFLPAD--IAVQWAQAVPDSFHARASALARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + LD + M+ AA +LVG HDF+ FR+ CQA SP++T+ ++ G Sbjct: 119 RPSVESGRVGWVCHRLDHDAMQQAADYLVGEHDFSAFRASTCQAPSPVKTLRRIGISCRG 178 Query: 182 N------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 VA +FLH IR+ +G L +G GK + +++ L+A+ R Sbjct: 179 QSPPHPALGWSPCYWRFEFVANAFLHHMIRNIMGCLVAIGQGKQSPQWMQQLLRARSRAA 238 Query: 230 CGPLAPPEGLYFDSVEYS 247 P P+GLYF Y+ Sbjct: 239 AAPTFAPDGLYFLGPVYA 256 >gi|299144417|ref|ZP_07037497.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518902|gb|EFI42641.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 243 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I+ Y+GS Y G+Q Q S+++G ++ AI + ++ AGRTDSGVHA+ Q +F Sbjct: 5 LIVSYDGSSYHGFQIQPQASTVEGVLKNAIEDTVKHEIKLYTAGRTDSGVHAMGQCVNFY 64 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L K +N +L D IS++ S VD FHAR+SA + Y Y I + L Sbjct: 65 SETTINIGNLPKVINFHL--PDDISVVGASYVDDDFHARYSAKGKYYRYMIYRGKYRNPL 122 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + RA P L+ + M+ +L+G +D+ TF H IR ID +V G+ I Sbjct: 123 YRNRAMHFPYELNLKKMQSTLNYLIGENDYKTFMGRHAIVKDTIRRIDKIEVVEDGDFIY 182 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I +SFL +R VG+ + G++ ++ AL + RK GP AP GLY + Sbjct: 183 IDFYGKSFLKNMVRIIVGTAVEIARGRFEEEYMKYALNKKHRKAAGPTAPSYGLYLMKIY 242 Query: 246 Y 246 Y Sbjct: 243 Y 243 >gi|291551097|emb|CBL27359.1| pseudouridylate synthase I [Ruminococcus torques L2-14] Length = 244 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 134/247 (54%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ N +++QG++E+ I V G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTAYQGWQRQANTENTLQGTLERTISSVAGYPVEIDGSGRTDAGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + +N+ ++ + I IL+ +V FHAR SA+ + Y+Y++ Sbjct: 61 QTATVVLSGRVEDGFFTEKINS--RLPEDIRILDAELVRNGFHARKSAVGKKYIYQLDLA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD + MR AAQ L+G ++F + + S+ RTI + Sbjct: 119 EKPDVFTRRYTYHFPQRLDLDAMRKAAQLLIGTYEFAGYTDKKDEKSTK-RTIYAIMICG 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I+ FL+ +R G+L VG G + +++ L+++DR + G LAP GL Sbjct: 178 QGSKVSIQYEGTGFLYHMVRILTGTLLEVGTGARSIESVKEPLKSKDRSQAGFLAPARGL 237 Query: 240 YFDSVEY 246 + D V Y Sbjct: 238 FLDEVYY 244 >gi|294101662|ref|YP_003553520.1| tRNA pseudouridine synthase A [Aminobacterium colombiense DSM 12261] gi|293616642|gb|ADE56796.1| tRNA pseudouridine synthase A [Aminobacterium colombiense DSM 12261] Length = 271 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY ++ Y+G+ + GWQRQ +S+Q S+E+A+ + + + AGRTD GVH+ QV Sbjct: 1 MRYAAVVSYDGTAFCGWQRQLGVASVQQSLEEALSKLCATSIPIVAAGRTDGGVHSRGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F L W P L A+N YL +T+ I+ + V++ F ARF A+ R Y Y I A Sbjct: 61 ISFSLPSFWEPRRLVLAINFYL--PETVRIMGVFPVEESFSARFCALWREYRYYIWHGPA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 RAW D ++ A ++L G H+F F I +RTI G Sbjct: 119 FPPYLAQRAWWNRWQWDKTAVKKACEYLEGTHNFKAFCPIKECPEDTVRTILRIKYLRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGL 239 +L I V SFL +RS VGSL LVG GK +++ L + +DR G AP GL Sbjct: 179 HLSVITVRGNSFLMNMVRSIVGSLDLVGKGKNDPEWIKELLDDEKKDRTYAGMTAPAHGL 238 Query: 240 YFDSVEYS 247 YF V Y+ Sbjct: 239 YFWKVCYN 246 >gi|254467822|ref|ZP_05081228.1| tRNA pseudouridine synthase A [beta proteobacterium KB13] gi|207086632|gb|EDZ63915.1| tRNA pseudouridine synthase A [beta proteobacterium KB13] Length = 258 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I+EY G+ Y G+Q Q N ++IQ I+KA+ + V + +GRTD+GVHAL QV Sbjct: 1 MRIAAIVEYLGTNYAGFQIQPNLNTIQLCIQKALSKIANHDVKIEASGRTDAGVHALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + N++L ISI +S VDK FHARF+ + R Y Y + Sbjct: 61 FHFDTESQRPLNSWKRGANSFL--PQDISIKWVSEVDKNFHARFNVMEREYQYLLHCNDT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A+ +A ++ + + + +G+HDFT+FRS CQ+ PIR + Sbjct: 119 PSAIWHQKAGHYGYEINFKLLDKVLKEFIGKHDFTSFRSSECQSKKPIRIMHDVSYQKKE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + A FLH QIR+ + + V GK ++ + +DR + P GLY Sbjct: 179 NFILFKFTADGFLHHQIRNMMSVILDVVSGKKPLDYVQYLFEVKDRTKASNTFSPNGLYL 238 Query: 242 DSVEY 246 +++Y Sbjct: 239 ANIKY 243 >gi|89898653|ref|YP_515763.1| tRNA pseudouridine synthase A [Chlamydophila felis Fe/C-56] gi|123735904|sp|Q253C0|TRUA_CHLFF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89332025|dbj|BAE81618.1| tRNA pseudouridine synthase A [Chlamydophila felis Fe/C-56] Length = 268 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y G+ Y GWQRQ N SIQ IE A+ V G+ +VV +GRTDSGVHA Q Sbjct: 1 MKRVVLLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLGKPIVVSSSGRTDSGVHAYGQ 60 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF + P + K LNA L I I ++ + D FHARFSAI + Y Y + Sbjct: 61 VAHFSQPDHPLFSQPQSIKKMLNAIL--PKDIVIRDVVLSDVNFHARFSAIAKEYRYSLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ A+ S+ + M+ A++L+G HDF +F + +S RT+ D+ Sbjct: 119 RSPKPLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRDYTSTERTLFKLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ I FL+ +R+ VGSL + K+ +++ L + R++ P AP Sbjct: 179 IDNEEIVTIICKGNGFLYKMVRNIVGSLLDISKEKYPPEYIQEILAQKSRRKGPPAAPSH 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLHHVCY 247 >gi|239908843|ref|YP_002955585.1| tRNA pseudouridine synthase A [Desulfovibrio magneticus RS-1] gi|259550383|sp|C4XPZ9|TRUA_DESMR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239798710|dbj|BAH77699.1| tRNA pseudouridine synthase A [Desulfovibrio magneticus RS-1] Length = 274 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 13/256 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + G+ V VHGAGRTDSGVHAL Sbjct: 1 MARLRLTLAYDGTDFAGWQIQAAGGGRTVQGCLEEALATLCGQPVRVHGAGRTDSGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + KAL A L +++ +V FH+RF A + Y Y + T Sbjct: 61 AQVAHADVPEHRAGLPWGKALTALLP--KDVAVTEARLVAPDFHSRFDATGKEYRYTLWT 118 Query: 119 RQAP-LALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R L + W + + +LD M A VG HDF F++ S +R + + Sbjct: 119 RPGHVLPWRRPYVWDVGRYGTLDVAAMEACAGLFVGEHDFAAFQNAGTDVHSTVRRV--W 176 Query: 176 DVNSFGNLIEIRVVAR----SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 DV+ V R FL +R+ +G+L VG GK T+ D+ L A DR+ Sbjct: 177 DVSRLAGTGPDETVWRFHGEGFLKQMVRNLMGALVAVGRGKATAEDVATLLAAGDRRRAP 236 Query: 232 PLAPPEGLYFDSVEYS 247 AP +GL +VEY Sbjct: 237 GTAPAQGLCLHAVEYG 252 >gi|147676690|ref|YP_001210905.1| tRNA pseudouridine synthase A [Pelotomaculum thermopropionicum SI] gi|146272787|dbj|BAF58536.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI] Length = 273 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 134/246 (54%), Gaps = 7/246 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + I Y+G+ Y+G+Q Q+ ++Q IE+ + + GE + V GAGRTD+GVHA QV + Sbjct: 31 VTIAYDGTNYYGFQEQRGTKFRTVQEVIEERLSRLAGEQIRVIGAGRTDAGVHARGQVIN 90 Query: 64 FDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F+ W P + ALN+ L I+ L V FHARFSA+ ++Y Y I + Sbjct: 91 FN-PGNWPIPPERVAYALNSLL--PRDIAALESVEVPPSFHARFSAVAKTYRYTIYNARV 147 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++ +P+ LD E M+ A L+GRHDF+ FR++ S +RT+ V+ G Sbjct: 148 HSPFLRLYSYHVPRRLDVEAMQAGAALLIGRHDFSAFRALGTPVKSTVRTMLEACVSREG 207 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A FL+ R G+L VG GK ++ L+++D GP AP GL Sbjct: 208 DLVYIDLKADGFLYHMARMIAGTLIRVGLGKIPPGEVAAILKSRDSLRGGPTAPARGLCL 267 Query: 242 DSVEYS 247 + +EY+ Sbjct: 268 EKIEYT 273 >gi|15837974|ref|NP_298662.1| tRNA pseudouridine synthase A [Xylella fastidiosa 9a5c] gi|30913418|sp|Q9PDK6|TRUA_XYLFA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9106376|gb|AAF84182.1|AE003968_13 tRNA pseudouridine synthase A [Xylella fastidiosa 9a5c] Length = 257 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 132/247 (53%), Gaps = 13/247 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+RY + +EY+GS + GWQ+ + G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQQLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQC 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ ++++ + FHARFSA R Y Y Sbjct: 61 QVVHFDSAVTRPPRAWI-------LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + Sbjct: 114 RLLNRQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V + +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A Sbjct: 174 ISVRRYAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTA 233 Query: 235 PPEGLYF 241 GL F Sbjct: 234 SARGLVF 240 >gi|307297407|ref|ZP_07577213.1| tRNA pseudouridine synthase A [Thermotogales bacterium mesG1.Ag.4.2] gi|306916667|gb|EFN47049.1| tRNA pseudouridine synthase A [Thermotogales bacterium mesG1.Ag.4.2] Length = 252 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+ Y+G+ +FG+Q Q ++QG E+A+ + + GAGRTD+GVH Q Sbjct: 3 MKRFAAIVSYDGTDFFGFQNQPGLRTVQGKFEEALHRIHKFCISSQGAGRTDTGVHGFGQ 62 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V FD + + + ALNA L SD + + + VD+ F RF+A +R Y Y I T Sbjct: 63 VIAFDSNLDRLEATTMRDALNANLP-SD-MYVRKVHEVDENFSPRFAAKKRIYHYYIQTS 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + W P SLD ++MR AA +L+G HDF FR+ +P+RTI + Sbjct: 121 SEPDIFRRRFVWWFPYSLDIKSMRRAAVNLLGEHDFAAFRT-GKDDRNPVRTITAIRIIR 179 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I IRV SFL +R+ VG+L VG G + + + L + DR APP+G Sbjct: 180 YKPYIILIRVEGISFLKRMVRNIVGTLVKVGTGSVSEESVSEFLSSHDRSTLPGTAPPQG 239 Query: 239 LYFDSV 244 L F V Sbjct: 240 LVFYKV 245 >gi|332359236|gb|EGJ37057.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK49] Length = 249 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERKFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|325261709|ref|ZP_08128447.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324033163|gb|EGB94440.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 248 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+GS Y GWQRQK+ ++QG +E+A+ VTG + G+GRTD GVHA Sbjct: 1 MRTYKLTVVYDGSRYQGWQRQKSTEKTVQGILERAVTEVTGRQTEIDGSGRTDGGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + C +LN L + I + + +V FHAR++A + Y Y I TR Sbjct: 61 QTASMVLPGKVEETGFCASLNNAL--PEDIRVKEMKLVKNGFHARYNAKGKRYEYFIDTR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P L+ M AA++L+G HDF F + S+ IRTI + Sbjct: 119 EKPDVFTRKYCYHYPYELNIPAMEEAAEYLIGTHDFAGFTDKKDEMST-IRTIYDIIIEK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R G+L +G G+ + AL+A DR+ G LAP GL Sbjct: 178 QDSKIRMEFYGTGFLYHMVRILTGTLLEIGTGEKRPHEAAAALEAGDREYAGFLAPARGL 237 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 238 FLKEVYYN 245 >gi|290579596|ref|YP_003483988.1| putative tRNA pseudouridine synthase A [Streptococcus mutans NN2025] gi|254996495|dbj|BAH87096.1| putative tRNA pseudouridine synthase A [Streptococcus mutans NN2025] Length = 249 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 MIRY II Y+G+ + G+QRQ ++Q IEK + L +G+ V VHGAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLNSGQAVKVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L L+ + D I ++ + V FHAR+ R++Y + + Sbjct: 61 QVIHFDLPQQRDLEKLRFGLDT--QTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + L + A P +D ++ A + L G HDFT F + + +RTI V Sbjct: 119 RPKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTASGTSVENKVRTISRATVEK 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G LI FL+ Q+R+ VG+L +G+G+ +++ L++ DR GP A Sbjct: 179 DEKTGFLI-FTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRSLAGPTAAS 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIIYD 248 >gi|66811154|ref|XP_639285.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4] gi|60467961|gb|EAL65974.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4] Length = 343 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 145/303 (47%), Gaps = 63/303 (20%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 RY +I EY G + G+QR K +Q +E ++ + G + + G+ RTD GV A+ Sbjct: 4 RYKIIYEYIGKSFTGFQRLKYPVVKLPVQQVLEDSLEKIHGYKIPIVGSSRTDHGVSAVG 63 Query: 60 QVAHFDL----------VREWVPVILCKALN-----AYLKISDTISILNLSIVDKQFHAR 104 QV+HFD+ + P L A+N YLK +I I+ IVD +FH R Sbjct: 64 QVSHFDVKTRTSKSGIEMPLLSPEELTMAINYNVGKEYLK---SIRIIKTEIVDDKFHCR 120 Query: 105 FSAIRRSYLYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F+A R+YLYR++ +Q PL L R +L+ L+ + MR A++ +G HDF++FRS Sbjct: 121 FNATSRTYLYRVMANCGRKQIPLEL-LDRVYLVGPILNLDEMRKASEMFIGTHDFSSFRS 179 Query: 161 IHCQASSPIRTIDHFDV------------NSFGNL------------------------- 183 C ++ PIR+I H + SF N+ Sbjct: 180 AKCSSTRPIRSISHIKIYDLPLPDIFQYNPSFQNISRSNTNYPIGDGEKNLDKKNTGLQY 239 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + AR+FLH Q+R V SL VG+G+ + LE+ +DR P A PE L + Sbjct: 240 FGIEIKARAFLHNQVRIMVASLIKVGEGEISIQQLEEIKDKKDRGAAPPTASPEPLTLLT 299 Query: 244 VEY 246 V Y Sbjct: 300 VSY 302 >gi|312868117|ref|ZP_07728321.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis F0405] gi|322390938|ref|ZP_08064444.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis ATCC 903] gi|311096521|gb|EFQ54761.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis F0405] gi|321142313|gb|EFX37785.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis ATCC 903] Length = 248 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + L G V VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLTRLNQGTPVTVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I + + V+ FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQARDEEKLRFALDT--QTPEDIDFIRVEQVEDDFHSRYKKHSKTYEFIVDYG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD E M+ A Q L G HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDVEKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTI------T 172 Query: 180 FGNLIEI----RVV----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 L+E R+V FL+ QIR+ VG+L +G+ + ++ L+ +DR G Sbjct: 173 EARLVEDAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNDRMPIEQIDLILEKKDRNLAG 232 Query: 232 PLAPPEGLYFDSVEYS 247 P A P GLY + Y Sbjct: 233 PTAAPNGLYLKEIRYE 248 >gi|293380407|ref|ZP_06626478.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 214-1] gi|290923090|gb|EFE00022.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 214-1] Length = 262 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 134/249 (53%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ QV Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 64 IHFDYPGKTIPANRMILAMNSMMPTD--IIFNNCQIVNDDFHARYSIKGKWYRYRVSLDH 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P LD E M+IAAQ L+G+HDFT+F + Q +RTI + + + Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGQIEDKVRTIYYVKITED 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A G Sbjct: 182 KKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYD 250 >gi|256847793|ref|ZP_05553238.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis 101-4-CHN] gi|256715482|gb|EEU30458.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis 101-4-CHN] Length = 253 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHA 57 MIRY + Y+G+ + G+Q Q + +I+ +++ + + + + G+GRTD+GVHA Sbjct: 1 MIRYKITFAYDGTNFSGFQIQPHKRTIEQTLKTIVNRMAKNPDPAISIIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD + +ALN+ L + I + IV +FHAR++A R+ Y YR+ Sbjct: 61 LNQVAHFDFPYHIPEQSMVRALNSQLPLD--IIVKKAEIVSNEFHARYNAHRKRYRYRVT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D +M AAQ LVG HDFT+F + QA S IRTI V Sbjct: 119 QGEFVDPFKRNYTAHFKYPVDIAHMNRAAQDLVGTHDFTSFVASGSQAKSNIRTIYEAKV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V FL+ Q+R V L +G G+ D+++ L A+DR+E AP Sbjct: 179 YYEDHDHEVIFEFVGNGFLYNQVRIMVALLLEIGSGQRPVDDVQRVLAARDRQEARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY +V+Y Sbjct: 239 ASGLYLVNVDY 249 >gi|332366230|gb|EGJ43985.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK355] Length = 249 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L+ +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILEEKDRYLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|225871229|ref|YP_002747176.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. equi 4047] gi|254764866|sp|C0M8L4|TRUA_STRE4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225700633|emb|CAW95185.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. equi 4047] Length = 249 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L I FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEIAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|24378608|ref|NP_720563.1| tRNA pseudouridine synthase A [Streptococcus mutans UA159] gi|38258780|sp|Q8DWH1|TRUA_STRMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24376463|gb|AAN57869.1|AE014860_6 putative tRNA pseudouridine synthase A [Streptococcus mutans UA159] Length = 249 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 MIRY II Y+G+ + G+QRQ ++Q IEK + L +G+ V +HGAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLNSGQAVKIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L L+ + D I ++ + V FHAR+ R++Y + + Sbjct: 61 QVIHFDLPQQRDLEKLRFGLDT--QTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + L + A P +D ++ A + L G HDFT F + + +RTI V Sbjct: 119 RPKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTASGTSVENKVRTISRATVEK 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G LI FL+ Q+R+ VG+L +G+G+ +++ L++ DR GP A Sbjct: 179 DDKTGFLI-FTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRSLAGPTAAS 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIIYD 248 >gi|300776045|ref|ZP_07085904.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910] gi|300505178|gb|EFK36317.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910] Length = 250 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 125/247 (50%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG YFG+Q Q + S+Q +EKA+ + E + GAGRTD+GVHA + Sbjct: 8 LRYFIEFSYNGKNYFGYQIQPDAISVQEELEKALSTILREEIKTTGAGRTDTGVHAKKIF 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E + L + LN++L ISI + V FHARF A R+Y Y I + Sbjct: 68 AHFDTEKE-LDDQLPRRLNSFL--PPDISIKRIFPVKDDFHARFDATYRTYEYYISLEKN 124 Query: 122 PLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E AW +SLD + M A + L DFT+F + + I I + Sbjct: 125 PFTQES--AWQHWKRSLDVDAMNEACKILFEYEDFTSFAKLKTDNKTNICKIYKAEWEQN 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ V A FL +R+ VG++ +G GK DL K ++ ++R G AP GLY Sbjct: 183 GAELKFTVSANRFLRNMVRAIVGTMVEIGTGKLKPEDLRKVIEDKNRNAAGTSAPGHGLY 242 Query: 241 FDSVEYS 247 V Y Sbjct: 243 LVDVGYE 249 >gi|188584870|ref|YP_001916415.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus JW/NM-WN-LF] gi|229557997|sp|B2A4Q5|TRUA_NATTJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|179349557|gb|ACB83827.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus JW/NM-WN-LF] Length = 253 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 16/252 (6%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAHF 64 + I Y+GS Y G+Q Q+N ++Q +EKA+ V + + A RTDSGVHA QVA+F Sbjct: 6 LTIAYDGSNYHGYQLQENAVTVQEKLEKALNTVYYPYKITPYSASRTDSGVHAKGQVANF 65 Query: 65 DLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + +P+ + ALN + + I+I+N +V F AR AI++ Y Y + AP Sbjct: 66 -FAPKQIPIHKIPLALNT--NLPNDIAIINAEVVGSNFRARRDAIKKEYRYYVY--HAPY 120 Query: 124 ALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS--PIRTIDHFDVN 178 R + + ++LD ++ AA +G+HDF+ FR+I S P++ I FD++ Sbjct: 121 MDPFWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPFRAIQGSNPSIDPVKEIYEFDID 180 Query: 179 ----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 GNLI +V+ +FL+ +R VG+L +G+GK ++KALQ DR GP A Sbjct: 181 VNAGEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGPTA 240 Query: 235 PPEGLYFDSVEY 246 P+GL + Y Sbjct: 241 SPQGLVLQQIWY 252 >gi|56478134|ref|YP_159723.1| tRNA pseudouridine synthase A [Aromatoleum aromaticum EbN1] gi|62901200|sp|Q5P1J2|TRUA_AZOSE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56314177|emb|CAI08822.1| pseudouridylate synthase A [Aromatoleum aromaticum EbN1] Length = 264 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 130/251 (51%), Gaps = 12/251 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY GS + G+Q Q +G ++Q +E AI + V +H AGRTD+GVHA QV Sbjct: 1 MRIVLGVEYAGSAFEGFQSQAHGRTVQDHLEAAIGHIAAHPVRLHCAGRTDAGVHATAQV 60 Query: 62 AHFDL--VRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD VR WV + +N+ ++S + + + FHARF A+ R Y Y + Sbjct: 61 VHFDTESVRPNSGWV-----RGVNS--RLSSPVVVRWATEAGDGFHARFCAVSRRYRYIL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 AL GR LD M AA+ L G HDF+ FR+ CQA SP++ + Sbjct: 114 HNSPVRPALLAGRVGWFHPPLDEIAMAEAARCLEGWHDFSAFRAAGCQAKSPVKLMHEVR 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G+ + A +FLH +R+ VG+L VG G+ ++ L + L A+DR Sbjct: 174 VQRAGDYVVFDFWANAFLHHMVRNLVGALVYVGKGRHSAAWLAEVLAARDRSLAALTFSA 233 Query: 237 EGLYFDSVEYS 247 +GLY VEY+ Sbjct: 234 DGLYLCGVEYA 244 >gi|227515518|ref|ZP_03945567.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931] gi|227086131|gb|EEI21443.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931] Length = 258 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 132/252 (52%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q +E+A+ + + ++V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQVQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSLPLD--VLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID V Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 ASGLYLVEVTYD 250 >gi|323141117|ref|ZP_08076020.1| tRNA pseudouridine synthase A [Phascolarctobacterium sp. YIT 12067] gi|322414383|gb|EFY05199.1| tRNA pseudouridine synthase A [Phascolarctobacterium sp. YIT 12067] Length = 250 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++ Y+GS Y G+Q+QKN ++Q +E+A+ ++ GE VV G+GRTD+GVHAL Q F Sbjct: 6 LVVAYDGSAYHGFQKQKNVQTVQNVLEEALTMLCGEKVVTAGSGRTDTGVHALAQTVTFT 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L +A + L + I +++ + + FHARFSA ++Y Y+++ + Sbjct: 66 TNGRIPCANLVRAAASLL--PEDIVVVSAEEMPEGFHARFSARWKTYHYKLLVNEHVNPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 AW + + L+ + M AA+ L+G HDF+ FRS +SPI+TI G I Sbjct: 124 MVRYAWQLRQQLEVKAMNEAAELLLGTHDFSAFRSSGSVDTSPIKTIFAAKWQQQGEEIL 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 R+ FL+ +R+ V S+ VG GK T D L AQ + AP +GLY V Sbjct: 184 FRISGDGFLYHMVRNIVWSMVQVGMGKRTVQDFAAELTAQRCEFLNEPAPAQGLYLAEVG 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|285017777|ref|YP_003375488.1| tRNA pseudouridine synthase a (tRNA-uridine isomeraseI (tRNA pseudouridylate synthaseI protein [Xanthomonas albilineans GPE PC73] gi|283472995|emb|CBA15500.1| probable trna pseudouridine synthase a (trna-uridine isomeraseI (trna pseudouridylate synthaseI protein [Xanthomonas albilineans] Length = 257 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 134/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q +++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSAFQGWQQLGESGGPSVQATLQGALSSVADVPVSVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L A ++ ++ + V FHARFSA R Y Y Sbjct: 61 QVVHFDCAALRPPRGWM-------LGATARLPPSVCVRWCVPVADDFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + L E M IAAQ L+G DF+ FRS+ CQA R + Sbjct: 114 RLLNRQVRPALYRQTLSWERRPLQVEAMHIAAQALLGEQDFSAFRSVQCQALHARRELQS 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G L+E ++ A +FLH +R+ VGSL +VG G+ + + + L ++R+ GP A Sbjct: 174 IVVTRNGELVEFQLQANAFLHHMVRNIVGSLVMVGTGEKPVSWIGELLSGRNRRIAGPTA 233 Query: 235 PPEGLYF 241 P+GL F Sbjct: 234 SPQGLVF 240 >gi|323463783|gb|ADX75936.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius ED99] Length = 267 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 121/244 (49%), Gaps = 2/244 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I YNG+ + G+Q Q G +IQG EK + + + V +H + RTD GVHA Q Sbjct: 1 MQRVLVKISYNGAQFLGFQIQNQGRTIQGYFEKILKRMHQQHVRIHPSSRTDRGVHAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P A+N+ L D I + ++S +D+ FH R+ + + Y Y I + Sbjct: 61 YFHFDTHLNITPERWQHAMNSAL--PDDIYVHDVSFIDRDFHCRYDCVGKRYRYSIYQAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PK+LD E M+ AAQ+ VG H+FTTF S + S RTI + Sbjct: 119 HRNPFWSQLKTFEPKALDIEAMQRAAQYFVGTHNFTTFCSQKTEVESKERTIYESRIEQT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I+ + FL+ +R + L VG GK ++ D+ L QDR AP EGLY Sbjct: 179 ADGIDFVITGSGFLYNMVRVIMAYLLEVGKGKRSADDVSNLLAQQDRNLVPHTAPAEGLY 238 Query: 241 FDSV 244 + + Sbjct: 239 LEKI 242 >gi|37523138|ref|NP_926515.1| tRNA-pseudouridine synthase A [Gloeobacter violaceus PCC 7421] gi|42559743|sp|Q7MBB9|TRUA_GLOVI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|35214141|dbj|BAC91510.1| tRNA-pseudouridine synthase A [Gloeobacter violaceus PCC 7421] Length = 304 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 120/245 (48%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y G +FGWQ Q ++Q +E+A + V H AGRTD+GVHA QV Sbjct: 16 RLALRVQYLGGHFFGWQWQPGQRTVQQCLEEATERIARHPVRYHAAGRTDTGVHASGQVV 75 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD ++ P + LN+ L D I++ + V +HARF+A+ R Y Y I P Sbjct: 76 HFDTHKKLAPETWVRGLNSLLP--DDIAVRAAAYVSDHWHARFTALWREYRYCIHNSTVP 133 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++W P LD E + A L G HDF FR + + + G Sbjct: 134 DLFVRAQSWYYPYCPLDSEAVAAALATLPGHHDFRAFRRAGSSRPHSLVHVYTAECTREG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I IRV A SFL+ +R +G+L VG G+W+ QA +R++ APP+GL Sbjct: 194 EQIAIRVRANSFLYGMMRLLIGALAEVGSGRWSVERFAGLWQAGNREQVKYAAPPQGLCL 253 Query: 242 DSVEY 246 V Y Sbjct: 254 VGVGY 258 >gi|157690932|ref|YP_001485394.1| tRNA pseudouridine synthase A [Bacillus pumilus SAFR-032] gi|166991159|sp|A8F9B7|TRUA_BACP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157679690|gb|ABV60834.1| tRNA-pseudouridine synthase I [Bacillus pumilus SAFR-032] Length = 247 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 129/246 (52%), Gaps = 14/246 (5%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+ + G+Q Q ++Q IE A+ + E+V + +GRTDSGVHA QV HFD Sbjct: 7 VSYDGTHFKGYQVQPGQRTVQTEIESALAKMHKQDELVPIVASGRTDSGVHAKGQVIHFD 66 Query: 66 L-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + W P ALN+ L D I +L VD+ FHARFS + + Y Y++ T Sbjct: 67 TPLSIPMERW-PF----ALNSLL--PDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTET 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A P LD + MR AA +L+G HDFT+F + + + +R I + + Sbjct: 120 HQNVFTRQYACHFPYRLDADKMREAAGYLIGTHDFTSFCAANTEVQDKVREIYTLEWKNV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + +E+RV FL+ +R G+L VG GK+ +++ L A++R+ G AP GLY Sbjct: 180 SDGLEMRVRGNGFLYNMVRIIAGTLLEVGSGKFHPDEIKAMLAARNREAAGKTAPSHGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LWEVFY 245 >gi|195941752|ref|ZP_03087134.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 80a] gi|216264809|ref|ZP_03436801.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a] gi|224533912|ref|ZP_03674497.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a] gi|215981282|gb|EEC22089.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a] gi|224512915|gb|EEF83281.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a] Length = 246 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 122/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQIITFDIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L V FH RFSA +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSDNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L N+ A+ L+G+HDFTTF I ++ R I G I Sbjct: 127 YQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKFKFRHIYFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ + V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLERVYY 245 >gi|284992843|ref|YP_003411397.1| tRNA pseudouridine synthase A [Geodermatophilus obscurus DSM 43160] gi|284066088|gb|ADB77026.1| tRNA pseudouridine synthase A [Geodermatophilus obscurus DSM 43160] Length = 282 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 132/255 (51%), Gaps = 15/255 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ GW RQ ++QG +E+A+ V + V + AGRTD+GVHA Q Sbjct: 18 LVRLRLGIAYDGTALHGWARQPAQRTVQGDLEEALSRVLRQPVSLTVAGRTDAGVHATGQ 77 Query: 61 VAHFDLVR----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 VAH D+ R E P L + L L I++ + + F ARF A+RR Y+YR+ Sbjct: 78 VAHGDVPRAVWAEQRPR-LVRRLRGVLPPD--IAVHTVEEAPRDFDARFGALRRHYVYRL 134 Query: 117 I-TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTI 172 P L + P+ LD + M +AA+ L+G HDF F C + ++ IRT+ Sbjct: 135 TDADSGPPPLRRADTVGWPRRLDADAMAVAAELLLGLHDFAAF----CRRREGATTIRTL 190 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V G+L+ +R A +F H+ +RS VG+L VG+G+ L + +R P Sbjct: 191 LTLAVTREGDLVTVRASADAFCHSMVRSLVGALTAVGEGRRPPEWPAALLTSTERSSEVP 250 Query: 233 LAPPEGLYFDSVEYS 247 + PP GL V+Y Sbjct: 251 VVPPGGLTLVGVDYP 265 >gi|184155960|ref|YP_001844300.1| tRNA pseudouridine synthase A [Lactobacillus fermentum IFO 3956] gi|238692990|sp|B2GDT8|TRUA_LACF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|183227304|dbj|BAG27820.1| pseudouridylate synthase A [Lactobacillus fermentum IFO 3956] Length = 258 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 132/252 (52%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q +E+A+ + + ++V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQIQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSLPLD--VLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID V Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 ASGLYLVEVTYD 250 >gi|308070945|ref|YP_003872550.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa E681] gi|305860224|gb|ADM72012.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Paenibacillus polymyxa E681] Length = 261 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 135/260 (51%), Gaps = 20/260 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M CM + Y+G+ Y G+Q Q NG++IQ +E AI+ +TGE + + G+GRTD+GVHA Q Sbjct: 1 MRNLCMKVNYDGTHYDGFQTQPNGNTIQDCLEHAIYSLTGERLKITGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVIL---CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V +F P+ L C ALNA+L I + + V FHAR A R++Y Y I Sbjct: 61 VFNF---HTESPIPLQRWCLALNAWLPRD--IIVTDAREVPLSFHARRMAKRKTYRYSIN 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI----- 172 + P + P SLD M HLVG D+T+F S Q ++ +RTI Sbjct: 116 ANRFPDIFHRRTQVHHPTSLDVRAMEEGLAHLVGTFDYTSFASRRSQKTNHVRTIYEAYM 175 Query: 173 --DHF----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 DH D + G +I + FL +R +G+L VG+GK +S D+ L+A++ Sbjct: 176 TVDHSFSRPDSDDQG-IIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSSDDIPSILEAKN 234 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R + GP A L +VEY Sbjct: 235 RSKAGPTAVGHALTLWNVEY 254 >gi|138893815|ref|YP_001124268.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans NG80-2] gi|196250992|ref|ZP_03149674.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16] gi|166228701|sp|A4IJL9|TRUA_GEOTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134265328|gb|ABO65523.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans NG80-2] gi|196209464|gb|EDY04241.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16] Length = 253 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ Y+G+ + G+Q Q ++QG E + + G+ V + +GRTD+GVHA QV HFD Sbjct: 8 VVAYDGTYFSGYQVQPGKRTVQGEFEGVLKRMHKGDDVRITASGRTDAGVHAYGQVIHFD 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P KALNA ++ D I++ ++ D FHARFSA + Y Y + T Sbjct: 68 TPLALSPEQWKKALNA--QLPDDIAVRSVDEADSTFHARFSAKAKEYRYNVWTAAERDVF 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + P L + M A L G HDFT+F S +RTI ++ G +++ Sbjct: 126 RRHYCAWHPYPLRVDAMSEALGLLKGTHDFTSFCSAKTVIEDRVRTIYQAEMEVDGPMLQ 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 R V FL+ +R VG++ VG GK D+E L A+DR+ GP AP EGLY V Sbjct: 186 FRFVGSGFLYNMVRIIVGTVLEVGQGKRPPDDIEALLAAKDRRLAGPTAPAEGLYLWRVY 245 Query: 246 YS 247 Y Sbjct: 246 YD 247 >gi|315022484|gb|EFT35511.1| tRNA pseudouridine synthase A [Riemerella anatipestifer RA-YM] gi|325335444|gb|ADZ11718.1| Pseudouridylate synthase [Riemerella anatipestifer RA-GD] Length = 246 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 127/248 (51%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RYC+ YNG YFG+Q Q S+Q ++E+A+ + E + GAGRTD+GVHA + Sbjct: 1 MLRYCIEFSYNGEKYFGYQIQPKQISVQETLEQALSTILREEIKTTGAGRTDTGVHAKKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +L K LN++L IS+ L V FHARF A R+Y Y I + Sbjct: 61 FAHFDTDLILEEELLPKRLNSFL--PPDISVKRLFRVSSDFHARFDATYRTYEYYISLEK 118 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + AW + L+ E M A + L DFT+F ++ + + I Sbjct: 119 NPFT--QNSAWGYWRRPLNLEAMNEACKILFEYTDFTSFSKLNTDTKTNLCEIYKAFWVQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + A FL +R+ VG++ +G GK DL K ++A++R G AP +GL Sbjct: 177 EGAELKFTISANRFLRNMVRAIVGTMVDIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGL 236 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 237 FLVDVGYN 244 >gi|226309840|ref|YP_002769734.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599] gi|254789606|sp|C0ZIL2|TRUA_BREBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226092788|dbj|BAH41230.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599] Length = 244 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++ Y+G+ + G+Q Q + ++QG IE A+ VTGE + V G+GRTD+GVHA Q Sbjct: 1 MKRLRCVLAYDGTDFSGFQVQPDQVTVQGEIEAALNRVTGEDIQVFGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +P+ + LN ++ D+I I + VD FHARF + Y Y I Sbjct: 61 VIHFDTASN-IPMDKWRFVLNN--QLPDSIVIRTVEEVDASFHARFDVQVKEYRYCIDNN 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A + LD + M+ AA +LVG HDFT+F S +RT+ V Sbjct: 118 PVADVFRHRYADHVRFPLDVDAMQQAAHYLVGEHDFTSFCSAKTYVEDKVRTVYGLSVEK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL+ +R VG+L VG GK +L + L A DR++ G AP +GL Sbjct: 178 IGDEVWVTCRGNGFLYNMVRIIVGTLVEVGQGKRNPAELREILAACDREKAGKTAPAKGL 237 Query: 240 YFDSVEY 246 V Y Sbjct: 238 TMWEVVY 244 >gi|270285538|ref|ZP_06194932.1| tRNA pseudouridine synthase A [Chlamydia muridarum Nigg] gi|270289549|ref|ZP_06195851.1| tRNA pseudouridine synthase A [Chlamydia muridarum Weiss] gi|301336935|ref|ZP_07225137.1| tRNA pseudouridine synthase A [Chlamydia muridarum MopnTet14] gi|13431951|sp|Q9PJT0|TRUA_CHLMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 267 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 129/242 (53%), Gaps = 5/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--- 64 I Y G+ Y GWQ Q N SIQ +E + ++ + V +GRTD+GVHA QVAHF Sbjct: 9 IAYQGTAYSGWQYQPNALSIQEVLETLLQKISRTRISVIASGRTDAGVHAQGQVAHFCCP 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + K LNA L I I ++ ++ FH+RFSAI + Y Y + PL Sbjct: 69 DHPHFSDPGQIKKMLNALL--PHDIVIRDVIATNEDFHSRFSAITKEYHYTLSLLPKPLP 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + L E+MR AA++LVG HDF +F ++ + SS +RT+ D+ +L+ Sbjct: 127 HHRLFCFSPRHKLCLESMREAAKYLVGTHDFASFANLGREYSSTVRTLYALDLLEQEHLV 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ VG+L +G GK+ L + L+ +DRK+ P APP GL V Sbjct: 187 TVICKGNGFLYKMVRNIVGALLDIGKGKYPPEHLLEMLEKKDRKKGPPSAPPYGLSLHHV 246 Query: 245 EY 246 Y Sbjct: 247 CY 248 >gi|125718790|ref|YP_001035923.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK36] gi|166229844|sp|A3CQB8|TRUA_STRSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125498707|gb|ABN45373.1| tRNA pseudouridine synthase A, putative [Streptococcus sanguinis SK36] Length = 249 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGRPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEDRDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|220906745|ref|YP_002482056.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7425] gi|219863356|gb|ACL43695.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7425] Length = 282 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 121/244 (49%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ ++GWQRQ + S+Q +E+AI +V G V VHGAGRTD+GVHA QVA Sbjct: 12 RIALVIQYLGTHFYGWQRQPHHRSVQEELEQAIAIVVGHPVTVHGAGRTDTGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD P + LN ++ + I + VD +H+RFSA+ R Y Y + T P Sbjct: 72 HFDTDSVIPPHRWAEILNN--RLPQDVLIRASAGVDSSWHSRFSALWRRYRYTLYTDCRP 129 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 K W + LD E M+ A L+GRH F + + G+ Sbjct: 130 NLFLKSFTWHYYRPLDTELMQTALNPLLGRHHLAAFHRSKSGRKHSWVEVQVAECVRRGS 189 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+EI V A FL+ +R VG L VG G+ + + Q Q R + AP GL Sbjct: 190 LVEIEVQASGFLYGMMRLLVGMLVQVGTGERSLASFTQIWQKQQRDQVKYAAPARGLCLL 249 Query: 243 SVEY 246 V Y Sbjct: 250 RVGY 253 >gi|120434790|ref|YP_860476.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] gi|117576940|emb|CAL65409.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] Length = 259 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 128/249 (51%), Gaps = 12/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G Y GWQ Q N S+Q IEK + V + + GAGRTD+GVHA + Sbjct: 12 LRYFIELSYFGKAYHGWQIQPNSISVQEVIEKNLSKVLRSTIEIVGAGRTDAGVHAKQMF 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ R +L LN+ L I+I ++ V+K HARF A RSY Y +I + Sbjct: 72 AHFDVDRVLDLELLKYKLNSML--PKDIAISDIFPVNKNVHARFDATSRSYEYHLIQEKD 129 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT----IDHFDV 177 P E AW + + E M +AA L G +F F ++ + +RT ID + Sbjct: 130 PFNRES--AWFLKHEVKIEKMNMAAATLRGYTNFKCF----SKSKTDVRTYNCRIDEAEW 183 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GNL+ + A FL +R+ VG+L +G K + + + ++++DR + G P Sbjct: 184 RMEGNLMVFHITADRFLRNMVRAVVGTLIEIGQNKHPVSYMHEVIKSEDRGKAGASVPAH 243 Query: 238 GLYFDSVEY 246 GLY ++Y Sbjct: 244 GLYLTRIKY 252 >gi|56418673|ref|YP_145991.1| tRNA pseudouridine synthase A [Geobacillus kaustophilus HTA426] gi|62901182|sp|Q5L3Q7|TRUA_GEOKA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56378515|dbj|BAD74423.1| pseudouridylate synthaseI [Geobacillus kaustophilus HTA426] Length = 258 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 3/241 (1%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 II Y+G+ + G+Q Q ++QG E+ + + G V V +GRTD+GVHA QV HFD Sbjct: 8 IIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTKVRVAASGRTDAGVHAYGQVIHFD 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 KALNA ++ D I + + D FHARFSA + Y Y++ T Sbjct: 68 TPLSLSSEQWKKALNA--QLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAERDVF 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + P SL M A + L G HDFT+F S +RT+ +V + G ++E Sbjct: 126 RRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTSIEDRVRTMYRAEVKADGPMLE 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EGLY V Sbjct: 186 FRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDRRLAGPTAPAEGLYLWRVY 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|313676221|ref|YP_004054217.1| tRNA pseudouridine synthase a [Marivirga tractuosa DSM 4126] gi|312942919|gb|ADR22109.1| tRNA pseudouridine synthase A [Marivirga tractuosa DSM 4126] Length = 247 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 127/249 (51%), Gaps = 12/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I Y G+ Y GWQ+Q N +Q IE+ + + + G+GRTDSGVHA QV Sbjct: 1 MRYFFTIAYKGTQYHGWQKQPNAIGVQQKIEEVFSTILNQKSEIVGSGRTDSGVHATAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P+ L N L +++ + +V ++ HARF A R+Y Y I+T + Sbjct: 61 FHFDYSGELDPLQLVFKANKML--PKDVALKHAKLVKEEAHARFDAESRAYQYHIVTEKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA----SSPIRTIDHFDV 177 P A++ +A+ + L E M +AA+ L+ DF +F + S I +V Sbjct: 119 PFAID--QAYFFTQELAIEKMNLAAEKLLNYQDFESFSKVKTDVFTFNCSIFEAIWKQEV 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +S + + A FL +R+ VG+L VG K + + E+ ++A++RK G P Sbjct: 177 DS----LVFHIKANRFLRGMVRAIVGTLLDVGQHKISIENFEEIIKAKNRKSAGRAVPAH 232 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 233 GLYLTEVQY 241 >gi|171058363|ref|YP_001790712.1| tRNA pseudouridine synthase A [Leptothrix cholodnii SP-6] gi|170775808|gb|ACB33947.1| tRNA pseudouridine synthase A [Leptothrix cholodnii SP-6] Length = 262 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 122/245 (49%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y GS Y GWQ Q NG+++Q +E A+ + V AGRTD+GVHAL QV Sbjct: 1 MRLALGLSYRGSAYRGWQSQTNGATVQDVLEAALCRFAATPIRVSCAGRTDAGVHALNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D R+ P + N YL +++ V FHAR +A R Y Y ++ Sbjct: 61 VHLDTDRDREPFSWVRGTNTYLPPD--VAVQWCRPVPDAFHARNAARARRYAYVLLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+E G+ I + LD M +A L+G HDF+ FRS CQA SP++ + + G Sbjct: 119 RPAMEAGQVGWIFRPLDQARMEASAALLIGEHDFSAFRSADCQALSPVKQMRTIRIGRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH IR+ +G L VG G L L ++DR+ P P+GLYF Sbjct: 179 PYWRFDFEASAFLHHMIRNLMGCLIAVGTGARDPAWLAGVLASRDRRLAAPTFSPDGLYF 238 Query: 242 DSVEY 246 Y Sbjct: 239 LGPRY 243 >gi|119511153|ref|ZP_01630270.1| tRNA pseudouridine synthase A [Nodularia spumigena CCY9414] gi|119464141|gb|EAW45061.1| tRNA pseudouridine synthase A [Nodularia spumigena CCY9414] Length = 296 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK S+Q IE AI V G + +HGAGRTDSGVHA QVA Sbjct: 13 RVALVIQYVGTHFHGWQRQKQHRSVQEEIETAIATVLGYHLTLHGAGRTDSGVHAAAQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ P LN+YL I I + VD ++HARFSA R Y Y I T + P Sbjct: 73 HFEATGLIPPHRWASILNSYLP--QDILIKASAAVDNRWHARFSAAYRRYRYTIYTEERP 130 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W LD ++ A + L+G+H F + S + + + G Sbjct: 131 NLFVRPFSWHYYYAPLDECLIQAALEPLMGKHHLAAFHRAGSKRSHSWVEVQAAECHRSG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A FL+ +R VG L VG GK T + Q + R+E APP+GL Sbjct: 191 PFLHIEIQANGFLYGMVRLLVGMLAQVGTGKLTLAGFTELWQEERREEVKYAAPPQGLCL 250 Query: 242 DSVEYS 247 V Y Sbjct: 251 LRVGYP 256 >gi|323440101|gb|EGA97816.1| tRNA pseudouridine synthase A [Staphylococcus aureus O11] gi|323442775|gb|EGB00401.1| tRNA pseudouridine synthase A [Staphylococcus aureus O46] Length = 267 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M+ AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMKRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEILKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHDVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|237802891|ref|YP_002888085.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/Jali20/OT] gi|237804813|ref|YP_002888967.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/TZ1A828/OT] gi|255311275|ref|ZP_05353845.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 6276] gi|255317577|ref|ZP_05358823.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 6276s] gi|231273113|emb|CAX10026.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/TZ1A828/OT] gi|231274125|emb|CAX10919.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/Jali20/OT] Length = 267 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 126/242 (52%), Gaps = 5/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--- 64 I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Q+AHF Sbjct: 9 IAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQGQIAHFHCP 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + K LNA L I I + + D FH+RFSAI + Y Y + PL Sbjct: 69 DHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPKPLP 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D++ +L+ Sbjct: 127 HHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLDLSEQEHLV 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ VG+L +G GK+ L L +DR++ P APP GL V Sbjct: 187 TVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPPYGLSLHHV 246 Query: 245 EY 246 Y Sbjct: 247 CY 248 >gi|282906560|ref|ZP_06314408.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Btn1260] gi|282329459|gb|EFB58980.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Btn1260] Length = 264 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLHQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|227888821|ref|ZP_04006626.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii ATCC 33200] gi|227850658|gb|EEJ60744.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii ATCC 33200] Length = 263 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALNA + I DT+ IVD+ FH ++S + Y Y + + Sbjct: 64 IHFDYPGKEIPAKNMMLALNALMPI-DTV-FFESEIVDEDFHVQYSTKGKWYRYVVDQHR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 122 FTDPFNRFYTGHYPYPLDISLMQQAARDLIGEHDFTSFAASGGQIVDKVRTIYYVNITPD 181 Query: 181 GNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I + FL+ +R VG+L +G+ K D+ + L+ +DR+E AP G Sbjct: 182 PDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNQKRPVDDIPRVLKTKDRQEVRTTAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLQHVFYE 250 >gi|76789199|ref|YP_328285.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/HAR-13] gi|123606852|sp|Q3KLN5|TRUA_CHLTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76167729|gb|AAX50737.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/HAR-13] Length = 267 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 126/242 (52%), Gaps = 5/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--- 64 I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Q+AHF Sbjct: 9 IAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQGQIAHFHCP 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + K LNA L I I + + D FH+RFSAI + Y Y + PL Sbjct: 69 DHPHFTDPRQIQKMLNALL--PHDIVIHDAVMTDGDFHSRFSAIAKEYRYTLSLLPKPLP 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D++ +L+ Sbjct: 127 HHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLDLSEQEHLV 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ VG+L +G GK+ L L +DR++ P APP GL V Sbjct: 187 TVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPPYGLSLHHV 246 Query: 245 EY 246 Y Sbjct: 247 CY 248 >gi|110803601|ref|YP_698382.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] gi|110684102|gb|ABG87472.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] Length = 248 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVHA V Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + K +N YL + I + + ++FHARF+ ++Y Y I + Sbjct: 66 ANFKTNSLMTLEQIIKYINEYL--PEDIRVKEIREASERFHARFNVKSKTYEYTIDNNKF 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + + Sbjct: 124 KDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENN 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ I++ FL +R VG+L VG GK + L+A++R + AP GL Sbjct: 184 NILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCL 243 Query: 242 DSVEY 246 + Y Sbjct: 244 LELNY 248 >gi|160947056|ref|ZP_02094223.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270] gi|158446190|gb|EDP23185.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270] Length = 247 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 2/243 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I Y+GS +FG+Q+QKN ++QG IE A+ +T E + + AGRTD GVH+LR + +F Sbjct: 5 MLTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITEENINIISAGRTDRGVHSLRHIINF 64 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + ALN +L I + +L+ V + FH+RF A ++Y Y + + Sbjct: 65 HTESNVGVLNFKTALNHFLPIG--VRVLDSKEVSENFHSRFDAKMKTYKYILNLDEVMDP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + P LD E M+ A ++ +GR F F +PIR I+ F++ N + Sbjct: 123 IYYNYKANFPYPLDIEKMKRAKEYFIGRKSFKAFMGPRTGNINPIREINSFEIYKENNDL 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + +SF+ Q+R VG+L +G G +LE+ L ++DR G P GLY + Sbjct: 183 IFLIKGQSFIRNQVRIMVGTLVDIGRGLIEEDELERILDSEDRTRAGVTLSPNGLYLMEI 242 Query: 245 EYS 247 Y Sbjct: 243 LYD 245 >gi|226945473|ref|YP_002800546.1| tRNA pseudouridine synthase A [Azotobacter vinelandii DJ] gi|226720400|gb|ACO79571.1| tRNA pseudouridine synthase A [Azotobacter vinelandii DJ] Length = 288 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ +SIQ ++E A+ V G + + V AGRTD+ VHA Q Sbjct: 20 RVALGLEYRGARYHGFQRQNPRVASIQAALESALSRVAGGVPLNVVCAGRTDALVHASGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-- 118 V HFD E + + A + + IS+ + FHARFSA R Y Y I Sbjct: 80 VVHFDTPIERS--MHAWTMGANMNLPADISVAWAREMPAHFHARFSATARRYRYVIYNDP 137 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R A +A E W + LD E MR AA+ LVG HDF+ FR+ CQA SPI+T+ H + Sbjct: 138 IRPAHMAEEV--TW-NHRPLDIERMRQAARPLVGCHDFSAFRASQCQARSPIKTVHHLQL 194 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LI + + A +FLH +R+ G L +G G+ + L+ + R + G A P Sbjct: 195 IRHGRLIVLDIRANAFLHHMVRNIAGVLMTIGAGERPVEWAREVLEGRQRHKGGVTAHPY 254 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 255 GLYLVQVDY 263 >gi|319893169|ref|YP_004150044.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius HKU10-03] gi|317162865|gb|ADV06408.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius HKU10-03] Length = 267 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 121/244 (49%), Gaps = 2/244 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I YNG+ + G+Q Q G +IQG EK + + + V +H + RTD GVHA Q Sbjct: 1 MQRVLVKISYNGAQFLGFQIQNQGRTIQGYFEKILKRMHQQHVRIHPSSRTDRGVHAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P A+N+ L D I + ++S +D+ FH R+ + + Y Y I + Sbjct: 61 YFHFDTHLNITPERWQHAMNSAL--PDDIYVHDVSFIDRDFHCRYDCVGKRYRYSIYQAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PK+LD E M+ AAQ+ VG H+FTTF S + S RTI V Sbjct: 119 HRNPFWSQLKTFEPKALDIEAMQRAAQYFVGTHNFTTFCSQKTEVESKERTIYESRVEQT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I+ + FL+ +R + L VG G+ ++ D+ L QDR AP EGLY Sbjct: 179 ADGIDFVITGSGFLYNMVRVIMAYLLEVGKGRRSADDVPNLLAQQDRNLVPHTAPAEGLY 238 Query: 241 FDSV 244 + + Sbjct: 239 LEKI 242 >gi|153853827|ref|ZP_01995183.1| hypothetical protein DORLON_01174 [Dorea longicatena DSM 13814] gi|149753577|gb|EDM63508.1| hypothetical protein DORLON_01174 [Dorea longicatena DSM 13814] Length = 244 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ ++IQ +E +I + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTISYDGSRYQGWQRQATTDNTIQYILEWSIGKLVGYRVHIDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L +LN YL + I I+ + + FHAR SA + Y Y I R Sbjct: 61 QVASVKLSKLYDTKELKDSLNRYL--PEDIRIVKVELAKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A ++L+G +FT+F + + PIR I + + S Sbjct: 119 EKPDVFSRRYCYHYPEKLDIEAMRDATKYLIGPKNFTSF-TDDKECKDPIRKITNIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I FL+ +R G+L +G GK ++ L + A+DR G LAP GL Sbjct: 178 SGEKVRITYYGTGFLYHMVRILTGTLLEIGAGKRDASMLPVVIAAEDRSLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|331092366|ref|ZP_08341192.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330401390|gb|EGG80976.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 246 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 129/243 (53%), Gaps = 4/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MII Y+G+ Y GWQRQ +IQG IEK I V G V + G+GRTD GVHA QVA+ Sbjct: 1 MIIAYDGTKYQGWQRQSGTPMTIQGIIEKTIGEVVGYPVEIDGSGRTDGGVHAGGQVANV 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L + + + LN K+ + I I ++ +V +FH+R A+ ++Y Y + R+ Sbjct: 61 RLSGKVEEAVFQEKLNE--KLPEDIRICHVELVLNRFHSRLDAVAKTYEYVVDMREKADV 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + K L+ E MR AA L+G+HDF+ F + S+ +R + + ++ + Sbjct: 119 FTRKYCYHYTKPLEPEKMRKAAALLIGKHDFSAFTDKKDEKSA-VRELYDIQIETYRQKL 177 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R F++ Q+R FVG+L G G+ + + +AL+++ R G LAP L V Sbjct: 178 YFRFYGNGFMYHQVRIFVGTLLEAGAGERSVESVLEALKSKKRVNAGFLAPAHALTLKEV 237 Query: 245 EYS 247 EY Sbjct: 238 EYK 240 >gi|319945640|ref|ZP_08019892.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641] gi|319748239|gb|EFW00481.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641] Length = 248 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + L G V +HGAGRTD+GVHAL Sbjct: 1 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLMRLNQGNPVTIHGAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I + + V FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQPRDEEKLRFALDT--QTPEDIDFIRVEQVPDDFHSRYQKHSKTYEFIVDYG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD M+ A Q L G HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDVAKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTITEARLVE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ + + FL+ QIR+ VG+L +G+G+ ++ L+ +DR GP A P Sbjct: 179 DAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVDQIDLILEKKDRNLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|153853813|ref|ZP_01995169.1| hypothetical protein DORLON_01160 [Dorea longicatena DSM 13814] gi|149753563|gb|EDM63494.1| hypothetical protein DORLON_01160 [Dorea longicatena DSM 13814] Length = 246 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 124/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + K++ +TGE + + GA RTDSGVHAL Sbjct: 1 MKRIRIFVAYDGTNYCGWQVQPNGVTIEEKLNKSLARLTGEEIRIIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA-IRRSYLYRIITR 119 VA FD P ALN ++ + I ++ V +H R+ I ++Y Y I Sbjct: 61 VAVFDTESSIPPERFAYALNQ--RLPEDIVVVRSDEVPADWHPRYQENISKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L+ + +D E MR A++LVG HDF +F +I +RT+ + Sbjct: 119 AVPNPLKTRYCTFVSFPMDVEAMRAGAKYLVGEHDFVSFCNIRTNTQDTVRTVYDLIIEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I +R+ FL+ +R G L VG G +T +++ L A+ G APP GL Sbjct: 179 KDDEIVLRITGNGFLYNMVRIIAGVLIRVGRGFYTPEKVKEILDAKVHTSEGATAPPNGL 238 Query: 240 YFDSVEYS 247 ++Y+ Sbjct: 239 VLMKIDYN 246 >gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str. JGS1721] gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str. JGS1721] Length = 248 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVHA V Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + +N YL + I I + ++FHARF+ ++Y Y I + Sbjct: 66 ANFKTNSLMTLEQIIEYINEYL--PEDIRITEIREASERFHARFNVKSKTYEYTIDNNKF 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + + Sbjct: 124 KDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENN 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ I++ FL +R VG+L VG GK + L+A++R + AP GL Sbjct: 184 NILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCL 243 Query: 242 DSVEY 246 + Y Sbjct: 244 LELNY 248 >gi|309777173|ref|ZP_07672136.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 3_1_53] gi|308915043|gb|EFP60820.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 3_1_53] Length = 253 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 124/251 (49%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I+ Y+GS Y GWQRQ N SIQ +E AI V G V + +GRTD+ VHAL Q Sbjct: 1 MPRYKVILSYDGSAYGGWQRQTNTHSIQQEVEAAIEKVEGRFVSITASGRTDAHVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 V HFD V+ P +ALN+ L I I + +VD FHARF AI + Y Y I T Sbjct: 61 VFHFDSVKHLEPENWKRALNSLL--PHDIRIQEVCLVDDAFHARFHAISKRYDYLITTEV 118 Query: 120 QAPL---ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHF 175 Q P + K R LD E MR A +G HDFT+F S S I+TI Sbjct: 119 QNPFYYNYMGKDRT-----RLDVERMRECACIFLGTHDFTSFTSSKVDPRKSKIKTITRL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 DV + + + FL +R +L G + + +++ L +D+ C A Sbjct: 174 DVVQEEHAVRMIFEGNGFLRYMVRMIAQTLIEAGKHRLSVAAVKEMLYGKDKHLCRYKAQ 233 Query: 236 PEGLYFDSVEY 246 EGLY V Y Sbjct: 234 AEGLYLVEVRY 244 >gi|62184804|ref|YP_219589.1| tRNA pseudouridine synthase A [Chlamydophila abortus S26/3] gi|81313017|sp|Q5L6V3|TRUA_CHLAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62147871|emb|CAH63617.1| putative tRNA pseudouridine synthase a [Chlamydophila abortus S26/3] Length = 268 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ N SIQ IE ++ V G+ + V +GRTD+ VHA Q Sbjct: 1 MTQVVILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVGKRIPVTSSGRTDAEVHAFGQ 60 Query: 61 VAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF D + + K LNA L I I ++ + D +FH+RFSAI + Y Y + Sbjct: 61 VAHFSQPDHPQFSQASSIKKMLNALL--PKDIVIRDVVLGDDKFHSRFSAIAKEYRYVLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL E+ A+ L + M+ AQ+L+G HDF +F + +S IRT+ + D+ Sbjct: 119 RSPKPLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFANHGRDYTSTIRTLFNLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I FL+ +R+ VGSL + GK+ +++ L ++R++ P AP Sbjct: 179 VDHGETVTIICRGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILMQKNRRQGPPAAPSH 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLYHVCY 247 >gi|226322792|ref|ZP_03798310.1| hypothetical protein COPCOM_00564 [Coprococcus comes ATCC 27758] gi|225208773|gb|EEG91127.1| hypothetical protein COPCOM_00564 [Coprococcus comes ATCC 27758] Length = 259 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ Y GWQRQ+N ++QG +E+ I + G+ VV G+GRTDSGVHAL Sbjct: 1 MNTYRITVAYDGTAYRGWQRQENTELTVQGILERRISEIAGKKTVVSGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q L +E K LNA L + I +L++S + FHAR SA+ + Y Y+I R Sbjct: 61 QECSLYLEQEIDMDSFKKQLNALL--PEDIRVLDISREKRDFHARKSAVGKCYEYQIDLR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P +D M AA++L+G HDF+ F + + +RTI + Sbjct: 119 DKMEVFHRKYRFHFPHPVDIAAMEQAAEYLMGTHDFSAFTDLK-EDKDTVRTIYAVGIVY 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + + FL+ +R G+L VG GK + ++ + L+A+DRK+ G AP +GL Sbjct: 178 EKDTLTLSWIGDGFLYHMVRILTGTLLDVGIGKIKAEEIPEILKAKDRKKSGFPAPAKGL 237 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 238 FLGRVFYT 245 >gi|312866252|ref|ZP_07726471.1| tRNA pseudouridine synthase A [Streptococcus downei F0415] gi|311098225|gb|EFQ56450.1| tRNA pseudouridine synthase A [Streptococcus downei F0415] Length = 248 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+QRQ S+Q +EK + L +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKAIISYDGTLFAGFQRQSKERSVQEELEKTLERLNSGNPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++++ V + FHAR++ ++Y + + T Sbjct: 61 QVIHFDLPQTRDEEKLRFGLDT--QSPEDIDVVSVEQVPEVFHARYNPHSKTYEFLVDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P +D M+ A L+G HDFT F + + +RTI V Sbjct: 119 RPKNPMMRAYATHFPYPVDLGAMQEAIADLLGTHDFTGFTASGTSVENKVRTISQAKVER 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ + ++ L A+DR GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTILAAKDRNLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEITY 247 >gi|325686853|gb|EGD28878.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK72] gi|332359857|gb|EGJ37671.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1056] Length = 249 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I +++ V + FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEDRDEEKLRFALDT--QTPEDIDFISVEQVSEDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|312144215|ref|YP_003995661.1| tRNA pseudouridine synthase A [Halanaerobium sp. 'sapolanicus'] gi|311904866|gb|ADQ15307.1| tRNA pseudouridine synthase A [Halanaerobium sp. 'sapolanicus'] Length = 248 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 124/245 (50%), Gaps = 4/245 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + +EY+GS Y GWQRQKN +IQ +E A+ + V V G+GRTD+GVHA Q A Sbjct: 5 YKITLEYDGSNYSGWQRQKNTKETIQEKLENALSKINKNKVEVIGSGRTDAGVHAAGQTA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F L + + A+N +L D I V K FHAR+ A + Y YRI+ Sbjct: 65 NFFLDIQIPTYKIPIAINTHL--PDDIICYKAEKVAKDFHARYDARGKKYRYRILNSNFN 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + + + LD + M+ A+ +G HDF F S S IR I FD+NS N Sbjct: 123 SVFVRNYVYKVHQRLDLDIMQKGAKIFLGSHDFAAFCSAGSSVDSTIREIYSFDINSKTN 182 Query: 183 -LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+I + FL+ +R VG+L + GK DLE+ L R+ G AP +GL Sbjct: 183 GEIQIDISGSGFLYNMVRILVGTLIELAKGKRNLADLEEILAGTQRERAGFTAPAKGLTL 242 Query: 242 DSVEY 246 V Y Sbjct: 243 LEVFY 247 >gi|313207118|ref|YP_004046295.1| tRNA pseudouridine synthase a [Riemerella anatipestifer DSM 15868] gi|312446434|gb|ADQ82789.1| tRNA pseudouridine synthase A [Riemerella anatipestifer DSM 15868] Length = 246 Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 126/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RYC+ YNG YFG+Q Q S+Q ++E+A+ + E + GAGRTD+GVHA + Sbjct: 1 MSRYCIEFSYNGEKYFGYQIQPKQISVQETLEQALSTILREEIKTTGAGRTDTGVHAKKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +L K LN++L IS+ L V FHARF A R+Y Y I + Sbjct: 61 FAHFDTDLILEEELLPKRLNSFL--PPDISVKRLFRVSSDFHARFDATYRTYEYYISLEK 118 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + AW + L+ E M A + L DFT+F ++ + + I Sbjct: 119 NPFT--QNSAWGYWRRPLNLEAMNEACKILFEYTDFTSFSKLNTDTKTNLCEIYKAFWVQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + A FL +R+ VG++ +G GK DL K ++A++R G AP +GL Sbjct: 177 EGTELKFTISANRFLRNMVRAIVGTMVDIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGL 236 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 237 FLVDVGYN 244 >gi|49484433|ref|YP_041657.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA252] gi|257423704|ref|ZP_05600133.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257426382|ref|ZP_05602784.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257429022|ref|ZP_05605409.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 68-397] gi|257431668|ref|ZP_05608031.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus E1410] gi|257434628|ref|ZP_05610679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M876] gi|282902120|ref|ZP_06310013.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C160] gi|282909528|ref|ZP_06317341.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911780|ref|ZP_06319576.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282915068|ref|ZP_06322845.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M899] gi|282925699|ref|ZP_06333347.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C101] gi|283958992|ref|ZP_06376435.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus A017934/97] gi|293497472|ref|ZP_06665326.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 58-424] gi|293511047|ref|ZP_06669744.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M809] gi|293549653|ref|ZP_06672325.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M1015] gi|295428801|ref|ZP_06821425.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589714|ref|ZP_06948355.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8] gi|56749728|sp|Q6GEL6|TRUA_STAAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49242562|emb|CAG41283.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272722|gb|EEV04824.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257276013|gb|EEV07464.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257279503|gb|EEV10090.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 68-397] gi|257282547|gb|EEV12679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus E1410] gi|257285224|gb|EEV15340.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M876] gi|282312528|gb|EFB42932.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C101] gi|282320789|gb|EFB51123.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M899] gi|282323476|gb|EFB53792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282326638|gb|EFB56938.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282596579|gb|EFC01538.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C160] gi|283789551|gb|EFC28376.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus A017934/97] gi|290918700|gb|EFD95776.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M1015] gi|291096403|gb|EFE26661.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 58-424] gi|291466034|gb|EFF08563.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M809] gi|295127150|gb|EFG56792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus EMRSA16] gi|297578225|gb|EFH96938.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8] gi|312437370|gb|ADQ76441.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH60] gi|315193148|gb|EFU23548.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS00] Length = 264 Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|299820989|ref|ZP_07052878.1| tRNA-pseudouridine synthase I [Listeria grayi DSM 20601] gi|299818010|gb|EFI85245.1| tRNA-pseudouridine synthase I [Listeria grayi DSM 20601] Length = 247 Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+GSG+ G+Q Q + ++Q +E+A+ + GE V V +GRTD+GVHA Sbjct: 1 MPRYKVILAYDGSGFSGYQVQPHKRTVQSELEEALLKMHKGEFVRVTASGRTDTGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +AL I I ++ V FHAR+ + + Y Y I Sbjct: 61 QVIHFDSPLQIPNEKFQRALQRMTPFD--IGIHSVEQVPDDFHARYGTVGKEYRYVIKNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A P L E M+ A+Q L+G HDFT+F S + S +RTI + Sbjct: 119 TDYDPFSRNFALHYPYPLSIEKMQEASQILIGEHDFTSFCSARTEQDSKVRTIYSIEFLK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL-APPEG 238 I I FL+ +R G+L +G G+ T+ LEKALQA+DR + + AP +G Sbjct: 179 EKETITICYRGDGFLYNMVRILTGALLDIGQGRMTAETLEKALQAKDRTKLPSVTAPAQG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLWEVAY 246 >gi|328957471|ref|YP_004374857.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] gi|328673795|gb|AEB29841.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] Length = 246 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 120/243 (49%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M IEY+G Y GWQR + +IQG IE + +TG + G+GRTD+G HA QVA+F Sbjct: 6 MTIEYDGGRYLGWQRLSDSDKTIQGKIENILTAMTGTKTEIIGSGRTDAGAHAKGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + L V ++FHAR++A + Y Y + P Sbjct: 66 KTTSTMEFPAMLDHLNRYL--PRDIVVKKLEEVPERFHARYNASGKKYSYYVWNNSIPSV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ ++ P LD + M A LVG HDF F S+ S +RTID ++ G+L+ Sbjct: 124 FDRNFSYDFPGELDIDKMNEACNKLVGTHDFIGFSSLKKSKKSTVRTIDEIKIHKEGDLL 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ IR +G+L +G G + ++ ++ R + G P +GL+ D V Sbjct: 184 HFTFKGEGFLYKMIRIIMGTLLEIGSGMADPSSIDAIFKSGIRSDAGMTVPSQGLFLDEV 243 Query: 245 EYS 247 Y Sbjct: 244 YYD 246 >gi|291544350|emb|CBL17459.1| pseudouridylate synthase I [Ruminococcus sp. 18P13] Length = 273 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 CM+ Y G+ Y G+QRQ N ++Q ++E+A+ V ++G RTD+GVHA + F Sbjct: 6 CMM-AYRGTKYHGFQRQDNAHTVQEAVEQALGSVLNHPATIYGCSRTDTGVHARQYCFSF 64 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 R P+ L + +N ++ D IS+L+ FHAR++ + YLY I ++P Sbjct: 65 QTERPIQPLNLVRGVNG--RLPDDISLLSAEDAALSFHARYACRGKEYLYLIHNSESPNP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + A + +D ++ A +G HDF +F S Q +S +RTI F V G+ I Sbjct: 123 FLRDLACHHRRPIDPALLQACADRFIGTHDFKSFCSAQAQRTSTVRTIYDFSVEMSGDSI 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V FL+ IR VG++ V DGK +DL+ L A+DR+ G A GLY + V Sbjct: 183 ILLVKGDGFLYNMIRILVGTMLQVNDGKLKLSDLDGILAARDRRCAGKTAMACGLYLNRV 242 Query: 245 EY 246 Y Sbjct: 243 FY 244 >gi|255507054|ref|ZP_05382693.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D(s)2923] gi|289525508|emb|CBJ14985.1| tRNA pseudouridine synthase A [Chlamydia trachomatis Sweden2] gi|296435064|gb|ADH17242.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/150] gi|296438784|gb|ADH20937.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/11023] Length = 267 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 126/242 (52%), Gaps = 5/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--- 64 I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Q+AHF Sbjct: 9 IAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQGQIAHFHCP 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + K LNA L I I + + D FH+RFSAI + Y Y + PL Sbjct: 69 DHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPKPLP 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D++ +L+ Sbjct: 127 HHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLDLSEQEHLV 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ VG+L +G GK+ L L +DR++ P APP GL V Sbjct: 187 TVICRGNGFLYKMVRNIVGALLDIGKGKYPPEYLLDMLATKDRRKGPPSAPPYGLSLHHV 246 Query: 245 EY 246 Y Sbjct: 247 CY 248 >gi|328944888|gb|EGG39047.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1087] Length = 249 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYNFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERKFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|222152501|ref|YP_002561676.1| tRNA pseudouridine synthase A [Streptococcus uberis 0140J] gi|254764869|sp|B9DTJ0|TRUA_STRU0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222113312|emb|CAR40884.1| tRNA pseudouridine synthase A [Streptococcus uberis 0140J] Length = 250 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GS + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHA Sbjct: 1 MTRYKAIISYDGSQFQGFQRQSHARSVQEEIEKTLTKLTNGKEIKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLDQDRDLEKLRFALDT--QSPEDIDFISVEKVSDDFHSRYTKHLKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD +N+++A + L+G HDFT F + + +RTI V Sbjct: 119 RPKNPMMRHYATHFPYPLDLDNIQLAIKDLIGTHDFTGFTASGATIENKVRTIIDASVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ Q+R+ VG+L +G+ + ++ L+ +DR+ GP Sbjct: 179 EEDKNFLIFTFTGNGFLYKQVRNMVGTLLKIGNNRMPVDQIKTILEKKDRQLAGPTPAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|227824316|ref|ZP_03989148.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21] gi|226904815|gb|EEH90733.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21] Length = 253 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 122/241 (50%), Gaps = 3/241 (1%) Query: 7 IIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ Y+G+ Y G+QRQK+ G +Q +EKA+ E + + AGRTD+GVHAL QV F+ Sbjct: 8 VVAYDGTNYQGFQRQKDYGVGVQQVLEKALSTALHEDISIKAAGRTDAGVHALGQVISFE 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P +AL L I+I I FHARF A+ ++Y Y ++ P Sbjct: 68 TSSPIPPENYRRALQHLL--PPDIAIREAFIKPDGFHARFDALDKTYRYTVLYAPLPDPC 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + AW + SL M AA LVG HDF++F++ + +SP+RT+ Sbjct: 126 ARRYAWEVRSSLTLAAMNEAAALLVGTHDFSSFKNQGSEKTSPVRTLYEAYWTQEKERFT 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + FL+ +R+ VG L VG G+WT D + A+DRK+ G AP GL V Sbjct: 186 FTIRGDGFLYRMVRNIVGCLVKVGTGEWTVADFAAVMAAKDRKKAGVAAPACGLSLVHVS 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|254521233|ref|ZP_05133288.1| tRNA pseudouridine synthase A [Stenotrophomonas sp. SKA14] gi|219718824|gb|EED37349.1| tRNA pseudouridine synthase A [Stenotrophomonas sp. SKA14] Length = 256 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 132/246 (53%), Gaps = 13/246 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLELALSSVADAPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD R W+ L ++ +I++ V FHARFSA R Y YR Sbjct: 61 VVHFDTDVVRDPRAWM-------LGTTTRLPRSIAVRWCVPVADDFHARFSARARRYRYR 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ R+ AL + ++LD M A Q L+G +DF+ FRS+ CQA R + Sbjct: 114 LLNREVRPALGRQTLSWERRTLDEALMHAAGQALLGENDFSAFRSVQCQALHARRELQSL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V+ G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP AP Sbjct: 174 QVSRQGEVIEVAVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAP 233 Query: 236 PEGLYF 241 P+GL F Sbjct: 234 PQGLVF 239 >gi|124008085|ref|ZP_01692784.1| tRNA pseudouridine synthase A [Microscilla marina ATCC 23134] gi|123986499|gb|EAY26305.1| tRNA pseudouridine synthase A [Microscilla marina ATCC 23134] Length = 248 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ QKN S+Q I+ A+ ++ + + G+GRTD+GVHA++Q Sbjct: 1 MRYFLELAYSGTQYHGWQIQKNAHSVQAEIQNALSVLLRQPTDILGSGRTDAGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + K +N L + ISI + V ++ H RF A +R Y+YRI + Sbjct: 61 AHFDTEQTLDGEVFAKKMNGIL--PEDISIKRVINVHEEAHTRFDATQRHYMYRINQEKT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----DV 177 P +G ++ D + M AAQ ++ DF F +H + + I + Sbjct: 119 PFL--RGVSYYNFHRFDIDLMNKAAQIMLKHEDFQCFSKVHTDVNHYLCNIQQAYWQKET 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + NL+ + A FL +R+ G++ VG GK T + E+ + +DRK+ G P + Sbjct: 177 SYNVNLLVFYIQANRFLRGMVRAITGTMLNVGSGKITLEEFEQIILNKDRKQAGWSVPAQ 236 Query: 238 GLYFDSVEY 246 GL+ VEY Sbjct: 237 GLFLAKVEY 245 >gi|297528514|ref|YP_003669789.1| tRNA pseudouridine synthase A [Geobacillus sp. C56-T3] gi|297251766|gb|ADI25212.1| tRNA pseudouridine synthase A [Geobacillus sp. C56-T3] Length = 258 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 3/241 (1%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 II Y+G+ + G+Q Q ++QG E+ + + G V V +GRTD+GVHA QV HFD Sbjct: 8 IIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTKVRVAASGRTDAGVHAYGQVIHFD 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 KALNA ++ D I + + D FHARFSA + Y Y++ T Sbjct: 68 TSLSLSSEQWKKALNA--QLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAERDVF 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + P SL M A + L G HDFT+F S +RT+ +V + G ++E Sbjct: 126 RRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTLIEDRVRTMYRAEVKADGPMLE 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EGLY V Sbjct: 186 FRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISMLLAAKDRRLAGPTAPAEGLYLWRVY 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|18309973|ref|NP_561907.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13] gi|24212547|sp|Q8XLQ0|TRUA1_CLOPE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13] Length = 248 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVHA V Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + +N YL + I + + ++FHARF+ ++Y Y I + Sbjct: 66 ANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKF 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + + Sbjct: 124 KDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENN 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ I++ FL +R VG+L VG GK + L+A++R + AP GL Sbjct: 184 NILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCL 243 Query: 242 DSVEY 246 + Y Sbjct: 244 LELNY 248 >gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str. F4969] gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str. F4969] Length = 248 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVHA V Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + +N YL + I + + ++FHARF+ ++Y Y I + Sbjct: 66 ANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKF 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + + Sbjct: 124 KDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENN 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ I++ FL +R VG+L VG GK + L+A++R + AP GL Sbjct: 184 NILSIKINGNGFLLNMVRIIVGTLVNVGLGKIEPKYINDILEAKERAKASEKAPAHGLCL 243 Query: 242 DSVEY 246 + Y Sbjct: 244 LELNY 248 >gi|183219967|ref|YP_001837963.1| tRNA pseudouridine synthase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910091|ref|YP_001961646.1| pseudouridylate synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687801|sp|B0SJC4|TRUA_LEPBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687833|sp|B0SC03|TRUA_LEPBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167774767|gb|ABZ93068.1| Pseudouridylate synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778389|gb|ABZ96687.1| tRNA pseudouridine synthase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 264 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 131/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA--IFLVTGEIVVVHGAGRTDSGVHAL 58 M Y +++EY+G+ + GWQ+QKN ++Q SIE A I L + AGRTD+GVHAL Sbjct: 1 MPNYALLVEYDGTHFNGWQKQKNLPTVQSSIESALGIILRRNPASRLSVAGRTDTGVHAL 60 Query: 59 RQVAHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 V +F +P L +LNA +S+ N+ V FHARFS R Y+Y++ Sbjct: 61 GMVCNFK-TEHPIPNFHKLLVSLNALTPTG--VSVKNVVEVPSDFHARFSCTGREYIYKL 117 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-PIRTIDHF 175 + + +GRA+ + +D E ++ Q LVG DF +F A +R I Sbjct: 118 YYSKYESSFVEGRAFWVKGHIDWERVKKQLQVLVGEKDFRSFTKAKSMAGKRAVREILAI 177 Query: 176 DVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + +IR+ A F+H +R VG+L +G G+W S ++ L+ ++R + G Sbjct: 178 QLENLSPEWYQIRIRANGFMHNMVRITVGTLLDIGKGRWESRSIDSILEEKNRTQAGVTL 237 Query: 235 PPEGLYFDSVEY 246 PP+GLYF Y Sbjct: 238 PPDGLYFVRAYY 249 >gi|258422666|ref|ZP_05685571.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635] gi|257847077|gb|EEV71086.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635] Length = 267 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNKAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|329730365|gb|EGG66755.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21193] Length = 267 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|261417639|ref|YP_003251321.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61] gi|319765297|ref|YP_004130798.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52] gi|261374096|gb|ACX76839.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61] gi|317110163|gb|ADU92655.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52] Length = 258 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 122/241 (50%), Gaps = 3/241 (1%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 II Y+G+ + G+Q Q ++QG +E+ + + G+ V V +GRTD+GVHA QV HFD Sbjct: 8 IIAYDGTHFSGYQIQPGKRTVQGELEEVLRRMHKGKGVRVAASGRTDAGVHAYGQVIHFD 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 KALNA ++ D I + + D FHARFSA + Y Y++ T Sbjct: 68 TSLSLSSEQWKKALNA--QLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAERDVF 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + P L + M A + G HDFT+F S +RTI V G ++E Sbjct: 126 RRHYCAWHPYPLHMDAMNEALRLFCGTHDFTSFCSAKTTIEDRVRTIYRAKVKVDGPMLE 185 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EGLY V Sbjct: 186 FRFVGSGFLYNMVRIMVGTVLEIGQGKRSPADISTLLAAKDRRLAGPTAPAEGLYLWRVY 245 Query: 246 Y 246 Y Sbjct: 246 Y 246 >gi|291288851|ref|YP_003505667.1| tRNA pseudouridine synthase A [Denitrovibrio acetiphilus DSM 12809] gi|290886011|gb|ADD69711.1| tRNA pseudouridine synthase A [Denitrovibrio acetiphilus DSM 12809] Length = 245 Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 127/241 (52%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I+EY G+ + GWQ Q NG ++Q + KA+ + V V G+GRTDSGVHAL QVA+F Sbjct: 7 LIVEYVGTDFAGWQVQPNGRTVQEELHKALSKMYKTKVTVIGSGRTDSGVHALGQVANFR 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 R P + LN+ L + ISI ++ V + FHA+ +A+ ++YLYRI + A+ Sbjct: 67 TERYIPPENVHMGLNSML--PEDISISSVEDVPEDFHAQLNAVSKTYLYRIFPSRVRSAM 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 GR W + L+ + M ++ G HDFT+F + +R I++ +I Sbjct: 125 LAGRTWWVKDELNYKRMCELLKYFEGEHDFTSFCVQTSLRENNVRRINNIRCYREDKVIC 184 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + FLH +R G++ + +++A++ +DR + GP A GLY V Sbjct: 185 IEINGNGFLHNMVRIIAGTVVEALRKGYGDEYIKEAIEGRDRSKAGPTAHAAGLYLKKVY 244 Query: 246 Y 246 Y Sbjct: 245 Y 245 >gi|94984145|ref|YP_603509.1| tRNA pseudouridine synthase A [Deinococcus geothermalis DSM 11300] gi|94554426|gb|ABF44340.1| tRNA pseudouridine synthase A [Deinococcus geothermalis DSM 11300] Length = 266 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 128/252 (50%), Gaps = 11/252 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R +++ ++G+ + GWQ Q++ S+Q ++ A+ +T E AGRTD+GVHA A Sbjct: 15 RLRLLLAWDGTDFAGWQAQRDVPSVQDTLYAALLRLTEEAARPVAAGRTDAGVHAEAMPA 74 Query: 63 HFDLVREW-VPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H D+ + + +P L +ALNA+L S +++L FHARFS R Y YR++ Sbjct: 75 HVDVPQSFRIPAKKLARALNAHLPPS--VAVLEAEEAPTGFHARFSCTERRYTYRLLNTP 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 L +GRA +P +LD M AA L+G HDF F + + + +R + V+ Sbjct: 133 QRHPLWRGRALHVPGALDVPAMNAAAACLLGTHDFAAFATREDRQT--VRELRALAVHPG 190 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G + E+RV SFL +R VG+L LVG GK D+ L ++R G P Sbjct: 191 PVVPGGRIWEVRVAGESFLRQMVRGLVGTLLLVGQGKLGQEDVTAVLVGRERARAGANVP 250 Query: 236 PEGLYFDSVEYS 247 GL F Y Sbjct: 251 GYGLTFTGASYG 262 >gi|116495915|ref|YP_807649.1| tRNA pseudouridine synthase A [Lactobacillus casei ATCC 334] gi|122262685|sp|Q035B5|TRUA_LACC3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116106065|gb|ABJ71207.1| Pseudouridylate synthase [Lactobacillus casei ATCC 334] Length = 247 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + + I IL IVD FHAR+SA + YLYR+ Sbjct: 61 QVISFDYPGNIPAESMLKAMNSLMPLD--IEILKAEIVDADFHARYSAKGKRYLYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +S N I FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 179 DSVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|228989350|ref|ZP_04149341.1| tRNA pseudouridine synthase A [Bacillus pseudomycoides DSM 12442] gi|228995533|ref|ZP_04155201.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock3-17] gi|228764262|gb|EEM13141.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock3-17] gi|228770428|gb|EEM19001.1| tRNA pseudouridine synthase A [Bacillus pseudomycoides DSM 12442] Length = 252 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHARG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I + + + FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WMNALNTML--PDDIVVRQVEKKTEDFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ E++R A + +G HDFT+F S +RTI D Sbjct: 121 LLSKNADVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSTKTDKKDKVRTIYEID 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L +G GK + + L+ QDR+ G + P Sbjct: 181 LMEQDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKMVPDSIPEILKKQDRRFAGKMVPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|294778889|ref|ZP_06744305.1| tRNA pseudouridine synthase A [Bacteroides vulgatus PC510] gi|294447198|gb|EFG15782.1| tRNA pseudouridine synthase A [Bacteroides vulgatus PC510] Length = 257 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 1 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR+ Sbjct: 61 AHFDYDRELDCVQITEKLNRLLPPD--IAVYAVKRVKDDAHARFDATYRTYKYYVTTRKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 P + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 119 P--FNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 177 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LVDVGY 242 >gi|15925209|ref|NP_372743.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50] gi|15927799|ref|NP_375332.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus N315] gi|148268659|ref|YP_001247602.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH9] gi|150394724|ref|YP_001317399.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH1] gi|156980534|ref|YP_001442793.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu3] gi|253316980|ref|ZP_04840193.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253734372|ref|ZP_04868537.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH130] gi|255006999|ref|ZP_05145600.2| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794565|ref|ZP_05643544.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781] gi|258408833|ref|ZP_05681117.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763] gi|258422432|ref|ZP_05685344.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719] gi|258439820|ref|ZP_05690566.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299] gi|258442624|ref|ZP_05691184.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115] gi|258446678|ref|ZP_05694833.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300] gi|258450204|ref|ZP_05698296.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224] gi|258455424|ref|ZP_05703384.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937] gi|269203852|ref|YP_003283121.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED98] gi|282893658|ref|ZP_06301890.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117] gi|282926765|ref|ZP_06334392.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102] gi|295404895|ref|ZP_06814708.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819] gi|296275990|ref|ZP_06858497.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MR1] gi|297243953|ref|ZP_06927843.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796] gi|54039782|sp|P65849|TRUA_STAAN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042087|sp|P65848|TRUA_STAAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166229841|sp|A7X5B5|TRUA_STAA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189029998|sp|A5IV03|TRUA_STAA9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030146|sp|A6U3U4|TRUA_STAA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13702019|dbj|BAB43311.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus N315] gi|14247992|dbj|BAB58381.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50] gi|147741728|gb|ABQ50026.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH9] gi|149947176|gb|ABR53112.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH1] gi|156722669|dbj|BAF79086.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu3] gi|253727689|gb|EES96418.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH130] gi|257788537|gb|EEV26877.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781] gi|257840516|gb|EEV64976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763] gi|257841863|gb|EEV66300.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719] gi|257847596|gb|EEV71598.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299] gi|257851745|gb|EEV75679.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115] gi|257854746|gb|EEV77694.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300] gi|257856296|gb|EEV79205.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224] gi|257862635|gb|EEV85403.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937] gi|262076142|gb|ACY12115.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED98] gi|282591216|gb|EFB96289.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102] gi|282763716|gb|EFC03844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117] gi|283471441|emb|CAQ50652.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ST398] gi|285817881|gb|ADC38368.1| tRNA pseudouridine synthase A [Staphylococcus aureus 04-02981] gi|294969840|gb|EFG45858.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819] gi|297178731|gb|EFH37976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796] gi|312830568|emb|CBX35410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129701|gb|EFT85692.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS03] gi|329723462|gb|EGG59991.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21172] Length = 267 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|256849152|ref|ZP_05554585.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-1A-US] gi|262047168|ref|ZP_06020126.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-3A-US] gi|256713928|gb|EEU28916.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-1A-US] gi|260572413|gb|EEX28975.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-3A-US] Length = 262 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ QV Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 64 IHFDYPGKTIPANRMILAMNSMMPTD--IIFNNCQIVNDDFHARYSIKGKWYRYRVSLDH 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P LD E M+IAAQ L+G+HDFT+F + + +RTI + + + Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGRIEDKVRTIYYVKITED 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A G Sbjct: 182 KKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYD 250 >gi|150005081|ref|YP_001299825.1| tRNA pseudouridine synthase A [Bacteroides vulgatus ATCC 8482] gi|149933505|gb|ABR40203.1| tRNA pseudouridine synthase A [Bacteroides vulgatus ATCC 8482] Length = 267 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 125/246 (50%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 11 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR+ Sbjct: 71 AHFDYDRELDCVQITEKLNRLLPPD--IAVYAVKRVKDDAHARFDATYRTYKYYVTTRKD 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 129 P--FNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 186 Query: 182 NLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ++ A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 187 GTEWVFIIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 246 Query: 241 FDSVEY 246 V Y Sbjct: 247 LVDVGY 252 >gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] Length = 248 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVHA V Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + +N YL + I + + ++FHARF+ ++Y Y I + Sbjct: 66 ANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKF 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + + Sbjct: 124 KDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENN 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ I++ FL +R VG+L VG GK + L+A++R + AP GL Sbjct: 184 NILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCL 243 Query: 242 DSVEY 246 + Y Sbjct: 244 LELNY 248 >gi|222150476|ref|YP_002559629.1| tRNA pseudouridine synthase A [Macrococcus caseolyticus JCSC5402] gi|222119598|dbj|BAH16933.1| tRNA pseudouridine synthase A [Macrococcus caseolyticus JCSC5402] Length = 273 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++YNG + G+Q Q G ++Q +E+ + + + V +H + RTD GVHA Q Sbjct: 1 MERILLQLQYNGVNFQGFQIQNEGRTVQYELERILKRMHKQFVRIHPSSRTDKGVHARMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD A N+ L D I I ++ + + FH+R+ I ++Y Y++ + Sbjct: 61 YVHFDTPLSIPESKWQHAFNSAL--PDDIYITQVTKISEHFHSRYDCIGKAYRYKVYVAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + G+ I LD + M AAQH +G HDFT+F S + + RT+ F+V Sbjct: 119 HRNVMHSGQITHIKTKLDVKRMNDAAQHFLGTHDFTSFCSAKTEIENKERTLYRFEVTET 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + V+ FL+ +R V L VG G+ + +QAQDR + G AP EGLY Sbjct: 179 AEGYDFYVIGSGFLYNMVRIMVQYLIDVGTGQKDGDSIPAIIQAQDRTKAGKTAPAEGLY 238 Query: 241 FDSV 244 + + Sbjct: 239 LEKI 242 >gi|329116632|ref|ZP_08245349.1| tRNA pseudouridine synthase A [Streptococcus parauberis NCFD 2020] gi|326907037|gb|EGE53951.1| tRNA pseudouridine synthase A [Streptococcus parauberis NCFD 2020] Length = 249 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GSG+ G+QRQ + S+Q IEK + L G+++ +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGSGFSGFQRQPHARSVQEEIEKTLLKLYKGQVIKIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E + AL+ + D I + + V +H R+ +++Y + + Sbjct: 61 QVIHFDLPLERDIEKIRFALDT--QTPDDIDFIKVEKVADDYHCRYLKHKKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD M A + LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRNYATHYPYPLDISLMDEAIKDLVGTHDFTGFTASGTSIENKVRTISEAKLTY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ Q+R+ VG+L +G+ + + +++ L+ ++R+ GP A Sbjct: 179 DAKRNFLIFSFTGNGFLYKQVRNMVGTLLKIGNQRMPVSQVQRILEEKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|254883215|ref|ZP_05255925.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_3_47FAA] gi|254836008|gb|EET16317.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_3_47FAA] Length = 263 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 7 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR+ Sbjct: 67 AHFDYDRELDCVQITEKLNRLLPPD--IAVYAVKRVKDDAHARFDATYRTYKYYVTTRKD 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 P + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 125 P--FNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 183 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 242 Query: 241 FDSVEY 246 V Y Sbjct: 243 LVDVGY 248 >gi|168211805|ref|ZP_02637430.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] gi|170710235|gb|EDT22417.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] Length = 248 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVHA V Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + +N YL + I + + ++FHARF+ ++Y Y I + Sbjct: 66 ANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKF 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + + Sbjct: 124 KDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENN 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ I++ FL +R VG+L VG GK + L+A++R + AP GL Sbjct: 184 NILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPSHGLCL 243 Query: 242 DSVEY 246 + Y Sbjct: 244 LELNY 248 >gi|28198519|ref|NP_778833.1| tRNA pseudouridine synthase A [Xylella fastidiosa Temecula1] gi|28056603|gb|AAO28482.1| pseudouridylate synthase [Xylella fastidiosa Temecula1] Length = 258 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 131/247 (53%), Gaps = 13/247 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+RY + +EY+GS + GWQ+ + G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 2 MMRYALGVEYDGSEFLGWQQLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQC 61 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ ++++ + FHARFSA R Y Y Sbjct: 62 QVVHFDSAVTRPPRAWI-------LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRY 114 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + Sbjct: 115 RLLNRQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQA 174 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A Sbjct: 175 ISVRRDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTA 234 Query: 235 PPEGLYF 241 GL F Sbjct: 235 SARGLVF 241 >gi|296435991|gb|ADH18165.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9768] gi|296437852|gb|ADH20013.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11074] gi|297140352|gb|ADH97110.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9301] Length = 267 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 126/242 (52%), Gaps = 5/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--- 64 I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Q+AHF Sbjct: 9 IAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQGQIAHFHCP 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + K LNA L I I + + D FH+RFSAI + Y Y + P+ Sbjct: 69 DHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPKPVP 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D++ +L+ Sbjct: 127 HHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLDLSEQEHLV 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ VG+L +G GK+ L L +DR++ P APP GL V Sbjct: 187 TVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPPYGLSLHHV 246 Query: 245 EY 246 Y Sbjct: 247 CY 248 >gi|81429336|ref|YP_396337.1| tRNA pseudouridine synthase A [Lactobacillus sakei subsp. sakei 23K] gi|123742201|sp|Q38UV3|TRUA_LACSS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78610979|emb|CAI56031.1| tRNA pseudouridylate synthase A (Pseudouridylate synthase I) [Lactobacillus sakei subsp. sakei 23K] Length = 249 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ + G+Q Q ++QG++EKA+ + G + V+G+GRTDSGVHA+ QV Sbjct: 4 RYRVTVAYDGTDFAGFQVQPKQRTVQGTLEKALTKMSKGAYIQVYGSGRTDSGVHAMGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + +ALN+ L + + +++ + D FHARFS + + Y+YR+ Sbjct: 64 VHFDYPSELPAKSMLRALNSLLPLD--MEVVDSQLADDDFHARFSTVGKRYMYRVDLGHY 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--NS 179 ++ P +D E ++ A ++G HD+T+F + +RTI V N Sbjct: 122 TNPFKRRYTGHYPYPIDVERIKAALSDVMGTHDYTSFAAAGGVIKDKVRTIYEATVVYNE 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N + FL+ +R V +L +G+G+ D + + +DR++ AP GL Sbjct: 182 AENELIFEFHGNGFLYNMVRILVATLLEIGNGRRDVHDFLRLYEVKDRQQARSTAPASGL 241 Query: 240 YFDSVEY 246 Y V Y Sbjct: 242 YLKEVYY 248 >gi|225867856|ref|YP_002743804.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus] gi|259550446|sp|C0MFQ1|TRUA_STRS7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225701132|emb|CAW98001.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus] Length = 249 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEAAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|123966948|ref|YP_001012029.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9515] gi|166228749|sp|A2BYR1|TRUA_PROM5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123201314|gb|ABM72922.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9515] Length = 268 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 126/242 (52%), Gaps = 3/242 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS + GWQRQKN S+Q IE A+F V+ +++ AGRTDSGVHA Q Sbjct: 1 MKRVALLVQYDGSYFSGWQRQKNAISVQEMIEDALFKVSNQMIKTFAAGRTDSGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN+ ++ TI IL V K +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDFVIPSDRYANVLNS--RLPSTIRILESVEVKKNWHACYSAVYRHYRYVINNSK 118 Query: 121 AP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L L K KSLD M A ++G HDF F+ S+ + TI ++ Sbjct: 119 IPNLFLNKWSWHRYQKSLDEFLMSKALNGMIGEHDFYAFQKSGSTRSTSVTTIKSIEIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI I + A FL+ +RS VG L LVG+ K + + + +++ AP GL Sbjct: 179 TEDLILIDIKATGFLYGMVRSIVGQLVLVGEKKISPEIFKDRWVGKKKQDVHESAPANGL 238 Query: 240 YF 241 F Sbjct: 239 CF 240 >gi|182681198|ref|YP_001829358.1| tRNA pseudouridine synthase A [Xylella fastidiosa M23] gi|32130280|sp|Q87DS1|TRUA_XYLFT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691112|sp|B2I9J0|TRUA_XYLF2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|182631308|gb|ACB92084.1| tRNA pseudouridine synthase A [Xylella fastidiosa M23] Length = 257 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 131/247 (53%), Gaps = 13/247 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+RY + +EY+GS + GWQ+ + G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQQLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQC 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ ++++ + FHARFSA R Y Y Sbjct: 61 QVVHFDSAVTRPPRAWI-------LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + Sbjct: 114 RLLNRQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A Sbjct: 174 ISVRRDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTA 233 Query: 235 PPEGLYF 241 GL F Sbjct: 234 SARGLVF 240 >gi|308809101|ref|XP_003081860.1| COG0101: Pseudouridylate synthase (ISS) [Ostreococcus tauri] gi|116060327|emb|CAL55663.1| COG0101: Pseudouridylate synthase (ISS) [Ostreococcus tauri] Length = 338 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/301 (31%), Positives = 142/301 (47%), Gaps = 55/301 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAIFLVTGE--IVVVHGAGRTDSG 54 + RY +EY+G+ + G+QRQ G +++Q ++++A+ TG V G+ RTD G Sbjct: 11 LPRYLAFLEYDGAKFRGFQRQNLGERATTTVQDALDEALETFTGNRGAVASVGSSRTDVG 70 Query: 55 VHALRQVAHFDLVR--------EWVPVILCKALNAYLKISD----TISILNLSIVDKQFH 102 VHA R AHFD R + + + LN +LK + + + ++ FH Sbjct: 71 VHATRNSAHFDCGRVGKDGSMDAYDSESVRRGLNYHLKSRERAMRVTECVRVDTLNPTFH 130 Query: 103 ARFSAIRRSYLYRIIT---RQAPLALEKGRAWLI----------------------PKSL 137 AR A+ R Y Y I+ ++ AW + L Sbjct: 131 ARHDAVSRRYRYEILVGDRDDGGSVFDRDGAWYLRAVVASDRGAKQTSSRRYTTCEATGL 190 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL------------IE 185 D + MR AA L+G+HDF++FR+ CQA SPIRTI DV S + Sbjct: 191 DVDAMRRAASVLIGKHDFSSFRASGCQAKSPIRTITSLDVVSRTTEWPSPEARGTRQEVS 250 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 +RV A SFL+ Q+R VG+LK VG G T D+ + L+A+D + +AP GLY V Sbjct: 251 VRVEAPSFLYHQVRLLVGALKSVGAGDLTVDDVRELLEAKDVSQAPQMAPAHGLYLMDVG 310 Query: 246 Y 246 Y Sbjct: 311 Y 311 >gi|229107828|ref|ZP_04237464.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15] gi|228675677|gb|EEL30885.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15] Length = 252 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 126/251 (50%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I R V FL+ +R VG+L VG GK S + + L Q+R+ G +AP Sbjct: 181 LIEQDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|323126548|gb|ADX23845.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 249 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + L +G+ V +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASGQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + D I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVENKVRTITEATLVQ 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G L+ FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLV-FTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAG 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|86606117|ref|YP_474880.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab] gi|86554659|gb|ABC99617.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab] Length = 287 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 121/247 (48%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I+Y GSG+ GWQRQ ++QG +E+AI L G V ++GAGRTD+GVHA QVA Sbjct: 5 RIALKIQYLGSGFRGWQRQAGHRTVQGVLEEAIALRAGHPVALYGAGRTDTGVHASGQVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD P + LN L + + +L + V +HARFSA R Y Y I+ R+ P Sbjct: 65 HFDTTSGIPPTEWARVLNDCLP--EDVVVLASAQVPDFWHARFSARWRRYRYLILNRELP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + +W + L E M A L+G H FR + G+ Sbjct: 123 DVFWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLGD 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLY 240 LI I V A FL+ +R VGSL++VG G+ + Q D R APP+GL Sbjct: 183 LISIEVQASGFLYRMMRLLVGSLEVVGRGEISPQQFVHLWQHNDWSRMRTRYSAPPQGLC 242 Query: 241 FDSVEYS 247 V Y+ Sbjct: 243 LVDVGYA 249 >gi|166154677|ref|YP_001654795.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 434/Bu] gi|166155552|ref|YP_001653807.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335947|ref|ZP_07224191.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2tet1] gi|238687386|sp|B0B836|TRUA_CHLT2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687485|sp|B0BCA1|TRUA_CHLTB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|165930665|emb|CAP04162.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 434/Bu] gi|165931540|emb|CAP07116.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 267 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 126/242 (52%), Gaps = 5/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--- 64 I Y G+ Y GWQ Q N SIQ ++ + + G + V +GRTD+GVHA Q+AHF Sbjct: 9 IAYQGTSYSGWQYQPNALSIQEVLKTILKKIAGFRISVISSGRTDAGVHAQGQIAHFHCP 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + K LNA L I I + + D FH+RFSAI + Y Y + PL Sbjct: 69 DHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPKPLP 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D++ +L+ Sbjct: 127 HHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLDLSEQEHLV 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ VG+L +G GK+ L L +DR++ P APP GL V Sbjct: 187 TVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPPYGLSLHHV 246 Query: 245 EY 246 Y Sbjct: 247 CY 248 >gi|110800554|ref|YP_695694.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|110675201|gb|ABG84188.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] Length = 248 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVHA V Sbjct: 6 ITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + +N YL + I + + ++FHARF+ ++Y Y I + Sbjct: 66 ANFKTNSLMTLEQIIEYINEYL--PEDIRVKEIREASERFHARFNVKSKTYEYTIDNNKF 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + + Sbjct: 124 KDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENN 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ I++ FL +R VG+L VG GK + L+A++R + AP GL Sbjct: 184 NILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCL 243 Query: 242 DSVEY 246 + Y Sbjct: 244 LELNY 248 >gi|82751809|ref|YP_417550.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122] gi|123727496|sp|Q2YYM7|TRUA_STAAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|82657340|emb|CAI81781.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122] Length = 267 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L + I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTLPVD--IYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQRGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|317154696|ref|YP_004122744.1| tRNA pseudouridine synthase A [Desulfovibrio aespoeensis Aspo-2] gi|316944947|gb|ADU63998.1| tRNA pseudouridine synthase A [Desulfovibrio aespoeensis Aspo-2] Length = 258 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 127/251 (50%), Gaps = 10/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + Y+G+ + GWQ Q ++QG IE A+ + G V +HGAGRTD+GVHAL Q Sbjct: 1 MPRFLLTLAYDGTDFSGWQLQARDRTVQGVIETALTEIMGSPVRLHGAGRTDAGVHALGQ 60 Query: 61 VAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 AHFD +R +P ALNA ++ + + +L V FHAR+ A ++Y Y + Sbjct: 61 TAHFDCQDIRASIPWQC--ALNA--RLPEDVRVLACRRVADDFHARYQAQAKTYEYTLWH 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 TR+ L + AW LD M AA+ L G HDF +F++ S IRT+ Sbjct: 117 TREFCLPQRRRFAWNC-GPLDFTAMEAAARLLTGEHDFASFQNTGTPVRSTIRTVTAISR 175 Query: 178 NSFGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + E R A FL +R+ VG L G G+ + + L A DR AP Sbjct: 176 HPGPTPHESVWRFTANGFLKQMVRNLVGCLAACGRGRLAPDEAGRILLAADRALAPATAP 235 Query: 236 PEGLYFDSVEY 246 P+GL SV Y Sbjct: 236 PQGLTLISVAY 246 >gi|323342828|ref|ZP_08083060.1| tRNA pseudouridine synthase A [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463940|gb|EFY09134.1| tRNA pseudouridine synthase A [Erysipelothrix rhusiopathiae ATCC 19414] Length = 245 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ ++Y+GS + GWQ+Q G +Q IE + + E + + G+GRTD+GVHAL Q Sbjct: 1 MMRFKATVQYDGSMFKGWQKQPFGRCVQTEIESVLTRINKEPIHISGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V + L +ALN L + I I ++ V+ FHARF + ++Y YR+ Sbjct: 61 VFHFDNVVDMDEKQLFRALNTLL--PNDIVITDIHPVEPNFHARFDVVSKTYEYRLNMGA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS 179 L E+ + K+LD + +R A + VG HDFT+F + + + +RTI +FD+ Sbjct: 119 YNL-FERNYVYQYNKALDLQAIRDAMESFVGTHDFTSFNATGLDEIENQVRTITNFDLIV 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + ++ FL +R V + G GK + ++ + L+A D+ GL Sbjct: 178 SDDHLNFVIIGDGFLRYMVRMIVATCVACGSGKCDAHEIAQMLKAADKNSISYNIDACGL 237 Query: 240 YFDSVEY 246 Y V Y Sbjct: 238 YLKKVNY 244 >gi|163791438|ref|ZP_02185847.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] gi|159873302|gb|EDP67397.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] Length = 246 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M +EY+G+ Y GWQR + +IQG IE I +TG + G+GRTD+G HA QVA+F Sbjct: 6 MTVEYDGARYLGWQRLTDSDKTIQGKIENTITAMTGTKTEIVGSGRTDAGAHAKGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I + L V ++FHAR++A + Y Y + P Sbjct: 66 KTESTMELQAMLDHLNRYL--PRDIVVKKLEEVPERFHARYNASGKKYSYYVWNNSVPSV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ ++ LD + M A LVG+HDF F S+ S +RTI+ ++ G+L+ Sbjct: 124 FERNFSYEYAGDLDIDKMNKACDKLVGKHDFIGFSSLKKSKKSTVRTINEIKIHKEGDLL 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ IR +G++ +G G ++ ++ R E G P +GL+ D V Sbjct: 184 HFTFIGEGFLYKMIRIIMGTILEIGAGTTELESIDAIFKSGIRSEAGMTVPSQGLFLDEV 243 Query: 245 EYS 247 Y Sbjct: 244 YYD 246 >gi|313906313|ref|ZP_07839656.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] gi|313468869|gb|EFR64228.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] Length = 271 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 130/256 (50%), Gaps = 14/256 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ Y G+Q Q NG ++Q + +A+ +TGE + GA RTD+GVHA Sbjct: 4 MKRIMLIIAYDGTNYCGFQVQPNGVTVQELVNRAVSELTGEEIRTIGASRTDAGVHARGN 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD ALN ++ D I + V FH R++ ++Y YRI+ R+ Sbjct: 64 VVVFDTKARMPGDKYSYALNP--RLPDDIKVQLSREVSPDFHPRYTDTVKTYEYRILNRR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFD 176 P + SLD + M+ AA++L G HDF +F++ ++P +RTI Sbjct: 122 MPDPTRRLNTLFNYFSLDADRMQAAARYLEGTHDFRSFQA--SGETNPDKETVRTIYSAS 179 Query: 177 VN----SFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 V + GN LI R+ FL+ +R G+L +G GK D++K + A+ R Sbjct: 180 VTRGNAADGNEDLITFRITGNGFLYNMVRILAGTLIEIGRGKLEPEDMKKIMDARSRDAA 239 Query: 231 GPLAPPEGLYFDSVEY 246 GP APP+GL + Y Sbjct: 240 GPTAPPQGLTLVEIRY 255 >gi|71899860|ref|ZP_00682009.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|71730377|gb|EAO32459.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] Length = 257 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 131/247 (53%), Gaps = 13/247 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+RY + +EY+GS + GWQ+ + G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQQLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQC 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ ++++ + FHARFSA R Y Y Sbjct: 61 QVVHFDSAVTRPPRAWI-------LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + Sbjct: 114 RLLNRQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A Sbjct: 174 ISVRRDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTA 233 Query: 235 PPEGLYF 241 GL F Sbjct: 234 SARGLVF 240 >gi|71274838|ref|ZP_00651126.1| tRNA pseudouridine synthase [Xylella fastidiosa Dixon] gi|71902311|ref|ZP_00684298.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|170729917|ref|YP_001775350.1| tRNA pseudouridine synthase A [Xylella fastidiosa M12] gi|238687976|sp|B0U6K4|TRUA_XYLFM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71164570|gb|EAO14284.1| tRNA pseudouridine synthase [Xylella fastidiosa Dixon] gi|71727947|gb|EAO30171.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|167964710|gb|ACA11720.1| Pseudouridylate synthase [Xylella fastidiosa M12] Length = 257 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 131/247 (53%), Gaps = 13/247 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+RY + +EY+GS + GWQ+ + G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQQLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQC 60 Query: 60 QVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ ++++ + FHARFSA R Y Y Sbjct: 61 QVVHFDSAVTRPPRAWI-------LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + Sbjct: 114 RLLNRQVRPALQHQFLSWERYPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A Sbjct: 174 ISVRRDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTA 233 Query: 235 PPEGLYF 241 GL F Sbjct: 234 SARGLVF 240 >gi|218960843|ref|YP_001740618.1| putative pseudouridylate synthase I [Candidatus Cloacamonas acidaminovorans] gi|167729500|emb|CAO80411.1| putative pseudouridylate synthase I [Candidatus Cloacamonas acidaminovorans] Length = 274 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 126/248 (50%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I Y+G+GY GWQ+QKNG +IQ +EK + + G+ + AGRTD+GVH+L Q Sbjct: 3 MARYLIKICYDGTGYCGWQKQKNGLAIQEVMEKMLEIFAGKKTSLIAAGRTDAGVHSLGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L A N YL D+I +L + V +AR+ A RSY YR+ + Sbjct: 63 YAHFDYSGSMQEKQLFLAFNRYL--PDSIKVLEIMKVSPCLNARYQAYERSYRYRLAKEK 120 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + P L+ E M+ A Q+L+G+HDF+TF + + + I + H ++ Sbjct: 121 TP--FNRNYSGFFPHLHLNLEKMQSAVQYLLGKHDFSTFGKSNPEVPNRICELKHISISE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEG 238 A FLH +R VG+L + + + L+ + R+ AP G Sbjct: 179 TERYFVFDFTADRFLHNMVRRIVGTLANISHLHLPPETVLEILENRCPRQNLVITAPASG 238 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 239 LYLMDVKY 246 >gi|256844460|ref|ZP_05549946.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 125-2-CHN] gi|256613538|gb|EEU18741.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 125-2-CHN] Length = 262 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V +GRTD+GVHA+ QV Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQRVIVQVSGRTDAGVHAVGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + A+N+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 64 IHFDYPGKTIPANRMILAMNSMMPTD--IIFDDCQIVDENFHARYSIKGKWYRYRVSLDH 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P LD E M++AAQ L+G+HDFT+F + Q +RTI + ++ + Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSFAASGGQIEDKVRTIYYINITKD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A G Sbjct: 182 EKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQTAHASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYD 250 >gi|229003158|ref|ZP_04161004.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock1-4] gi|228758121|gb|EEM07320.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock1-4] Length = 252 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHARG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I + + + FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WMNALNTML--PDDIVVRQVEKKIEDFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ E++R A + +G HDFT+F S +RTI D Sbjct: 121 LLSKNADVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSTKTDKKDKVRTIYEID 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L +G GK + + L+ QDR+ G + P Sbjct: 181 LMEQDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKMVPDSIPEILKKQDRRFAGKMVPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|225850198|ref|YP_002730432.1| tRNA pseudouridine synthase A [Persephonella marina EX-H1] gi|225645344|gb|ACO03530.1| tRNA pseudouridine synthase A [Persephonella marina EX-H1] Length = 244 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 131/245 (53%), Gaps = 9/245 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y ++I Y G Y GWQ+Q ++QG +E+ + ++ E +V+ G+GRTD+GVHAL QVA+ Sbjct: 7 YKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKEDIVLIGSGRTDAGVHALGQVAN 66 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + P + + LNA L IS+ ++ V FHARFSA ++Y+YRI T+ P Sbjct: 67 FKTISYRKPEEIYRYLNATL--PRDISVKSVEEVPLSFHARFSAKGKTYIYRIYTKPDPF 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSFG 181 G W I K LD + M A + + D + + + + IR + + G Sbjct: 125 L--HGFGWYISKKLDLKGMLEALEIVKKSKDLRSLSKKGEYLREDVEIREL---SMTYDG 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +IEI++ A FL +R VG + +G G + + E ++A+D + +APPEGL+ Sbjct: 180 KIIEIQITASHFLRYMVRKIVGHVVQIGLGSLSIQEFENIIEAKDPTKGLFIAPPEGLFL 239 Query: 242 DSVEY 246 V Y Sbjct: 240 KEVYY 244 >gi|325915522|ref|ZP_08177833.1| pseudouridylate synthase I [Xanthomonas vesicatoria ATCC 35937] gi|325538238|gb|EGD09923.1| pseudouridylate synthase I [Xanthomonas vesicatoria ATCC 35937] Length = 257 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 135/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V + V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASVQAALSSVADAPIQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ V FHARFSA R Y Y Sbjct: 61 QVVHFDSDALRQPRGWM-------LGTTARLPPSIAVRWCVPVADDFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD E M AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTLSWERRPLDAEAMHAAAQALLGENDFSAFRSVQCQALHARRNLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E+RV A +FLH +R+ VGSL L+G G+ + + L +DR GP A Sbjct: 174 ITVQRIGEVVEVRVQANAFLHHMVRNIVGSLILIGTGEQPTDWIATLLAGRDRTVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|255348836|ref|ZP_05380843.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 70] gi|255503376|ref|ZP_05381766.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 70s] Length = 267 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 126/242 (52%), Gaps = 5/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--- 64 I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Q+AHF Sbjct: 9 IAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQGQIAHFHCP 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + K LNA L I I + + D FH+RFSAI + Y Y + P+ Sbjct: 69 DHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPKPVP 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D++ +L+ Sbjct: 127 HHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLDLSEQEHLV 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ VG+L +G GK+ L L +DR++ P APP GL V Sbjct: 187 TVICRGNGFLYKMVRNIVGALLDIGKGKYPPEYLLDMLATKDRRKGPPSAPPYGLSLHHV 246 Query: 245 EY 246 Y Sbjct: 247 CY 248 >gi|253729885|ref|ZP_04864050.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726332|gb|EES95061.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 267 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L+ ++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLELKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|126658015|ref|ZP_01729167.1| tRNA pseudouridine synthase A [Cyanothece sp. CCY0110] gi|126620653|gb|EAZ91370.1| tRNA pseudouridine synthase A [Cyanothece sp. CCY0110] Length = 285 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 120/245 (48%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y GS + GWQRQ N ++Q IE +I V G +HGAGRTD+GVHA QVA Sbjct: 12 RVALVIQYQGSRFHGWQRQPNQRTVQEVIESSIAEVLGYHTPIHGAGRTDAGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + P + LN ++ D I I + V +HARFSA+ R Y Y T + P Sbjct: 72 HFDYISPIPPQRWVEILNQ--RLPDDILIRGCAEVSLTWHARFSALWRRYRYSFYTDKCP 129 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W + LD E M+ A L+GRH FR + G Sbjct: 130 NLFVRPFSWHYYYEPLDAELMQKALTPLLGRHHLAAFRRAGSHRHHSWVEVQETRCYRQG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R VG L VG GK + T+ + Q Q R++ AP +GL Sbjct: 190 QFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLTNFTEIWQNQRREQVKYSAPAKGLCL 249 Query: 242 DSVEY 246 V Y Sbjct: 250 LRVGY 254 >gi|323490654|ref|ZP_08095859.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2] gi|323395746|gb|EGA88587.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2] Length = 247 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R I Y+GSG+ G+Q Q + ++Q + K + + G+++ V +GRTD+ VHA Sbjct: 1 MKRLKATIAYDGSGFAGYQVQPDSRTVQLELMKVLETIHKGKVIQVVASGRTDAKVHATG 60 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P+I KALN L + I + ++ VD FHAR+ ++Y Y+ Sbjct: 61 QVIHFD-TELSIPIIGWLKALNVLL--PEDIRVHSIEEVDTSFHARYHTTGKTYRYKWDR 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 Q + + + LD E M+ A+Q +VG HDF++F + + +RT+ D Sbjct: 118 SQIISPFTRSLMVHVKQPLDVEAMKKASQAIVGTHDFSSFCAANTAVVDKVRTVRRLDFE 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN + + + FL+ +R G+L VG G+ + +LE + A DR G AP G Sbjct: 178 EHGNELHMVIEGTGFLYNMVRIIAGTLAEVGMGRRKAEELEDIVSATDRDAAGITAPAHG 237 Query: 239 LYFDSVEY 246 LY ++V Y Sbjct: 238 LYLENVMY 245 >gi|257868757|ref|ZP_05648410.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] gi|257802921|gb|EEV31743.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] Length = 246 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 125/242 (51%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQ IE + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYLGWQRLGDSDRTIQEKIESILTQMTNEKIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P + + LN YL I I ++ ++FHAR++A + Y Y + P Sbjct: 66 KTASDLSPEKMLQFLNRYL--PQDIVIKEVAEASERFHARYNATGKQYSYYVWNSPIPTV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+ R++ P+ LD + M+ A + +G HDF F ++ S RTI+ + G+++ Sbjct: 124 FERHRSFHCPQELDWDKMQAACEKFIGTHDFIGFSALKKTKKSTTRTIEELSLTREGDML 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R FL+ +R G++ +G G + +++ Q RK G P +GL+ D+V Sbjct: 184 RFRFKGDGFLYKMVRIITGTILEIGAGTMDISAIDEIFTNQVRKAAGETVPSQGLFLDAV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|297205058|ref|ZP_06922454.1| tRNA-pseudouridine synthase I [Lactobacillus jensenii JV-V16] gi|297149636|gb|EFH29933.1| tRNA-pseudouridine synthase I [Lactobacillus jensenii JV-V16] Length = 262 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 135/251 (53%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P + ALN+ + I + IV++ FH ++S + Y Y + Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSMMPTD--IIFKDAEIVNEDFHVQYSTHGKWYRYIVNQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 + ++ P L+ M+ AA L+G HDFT+F + Q +RTI + + Sbjct: 119 DRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIW 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 S N I + FL+ +R VG+L +G+ + DL++ + A+DR+E AP Sbjct: 179 QKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVRNTAPA 238 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 239 SGLYLYHVFYE 249 >gi|291562296|emb|CBL41112.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4] Length = 344 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 129/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KA+ + E V V GA RTDSGVHA Sbjct: 1 MRRIKLTVAYDGTAYKGWQLQPNGVTIEEMLNKALSDLLKEPVCVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD C A+N L + I ++ V +H R ++Y Y+I+ + Sbjct: 61 VAVFDTESRIPGDKFCYAVNRGL--PEDIRVVESEEVPLDWHPRKQNCVKTYEYQILNCK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + A L+ E M AA++L+G HDF +F + + QA +RTI +V Sbjct: 119 IEIPTRRLYAHFCYYPLNVEKMNEAAKYLIGEHDFISFCAANHQAEETVRTIYGAEVKKN 178 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ IR+ FL+ +R G+L VG G+W +++ L+A++RKE G AP +GL Sbjct: 179 DEDIVTIRLCGSGFLYNMVRIIAGTLLKVGTGEWEPEHVKEVLEARNRKEAGQTAPAKGL 238 Query: 240 YFDSVEYS 247 +EY Sbjct: 239 TLVGIEYE 246 >gi|329942480|ref|ZP_08291290.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Cal10] gi|332287117|ref|YP_004422018.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] gi|313847713|emb|CBY16703.1| putative tRNA pseudouridine synthase a [Chlamydophila psittaci RD1] gi|325507334|gb|ADZ18972.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] gi|328815390|gb|EGF85378.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Cal10] gi|328914357|gb|AEB55190.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] Length = 268 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ N S+Q IE ++ V G+ + V +GRTD+GVHA Q Sbjct: 1 MTQVVLLLAYQGTAYAGWQRQPNDLSVQEVIENSLTKVVGKRIHVTSSGRTDAGVHAFGQ 60 Query: 61 VAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF D R + K LNA L I I ++ + D FH+RFSAI + Y Y + Sbjct: 61 VAHFPQPDHPRFSQASGIKKMLNALL--PKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL E+ ++ L + M+ A++L+G HDF +F + +S IRT+ + D+ Sbjct: 119 RSPKPLPWERYFSYYPRHHLRTDLMQEGAKYLIGTHDFASFANHGRDYTSTIRTLFNLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I FL+ +R+ VGSL + GK+ +++ L ++R++ P AP Sbjct: 179 VDNGETVTIICKGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRRKGPPAAPSY 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLYHVCY 247 >gi|73662003|ref|YP_300784.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761549|sp|Q49ZD7|TRUA_STAS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72494518|dbj|BAE17839.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 267 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q++G +IQ EK + + V +H + RTD GVHA+ Q Sbjct: 1 MRVLVNISYQGSQFLGFQIQQHGRTIQQQFEKILKRMHKHEVRIHPSSRTDRGVHAIEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + ++S V+ FH R+ + +SY Y+I Sbjct: 61 FHFDTELNIPEQQWQYAMNRAL--PDDIYVNDVSFVNDDFHCRYDCVGKSYRYKIYQSAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 G +P+ LD E M +AAQH +G HDFT F S + S IRT+ + Sbjct: 119 KDPFLCGLKTYVPEQLDIEKMNMAAQHFIGTHDFTGFCSQKTEVESKIRTLYESRIEKTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R + L VG GK ++ + L+A+DR + AP EGLY Sbjct: 179 SGFDYIVTGSGFLYNMVRVLIAFLIEVGKGKREPQEVPQLLEARDRNQVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|57650803|ref|YP_187018.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus COL] gi|87160970|ref|YP_494808.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196131|ref|YP_500948.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222333|ref|YP_001333155.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. Newman] gi|161510423|ref|YP_001576082.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140179|ref|ZP_03564672.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258450785|ref|ZP_05698844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5948] gi|262048488|ref|ZP_06021372.1| tRNA pseudouridine synthase A [Staphylococcus aureus D30] gi|262052013|ref|ZP_06024224.1| tRNA pseudouridine synthase A [Staphylococcus aureus 930918-3] gi|282922088|ref|ZP_06329784.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9765] gi|284025245|ref|ZP_06379643.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 132] gi|294848752|ref|ZP_06789497.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9754] gi|304379403|ref|ZP_07362138.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|62901165|sp|Q5HDY9|TRUA_STAAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123098008|sp|Q2FW37|TRUA_STAA8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123763262|sp|Q2FES0|TRUA_STAA3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|172049003|sp|A6QJ61|TRUA_STAAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030147|sp|A8Z326|TRUA_STAAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57284989|gb|AAW37083.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus COL] gi|87126944|gb|ABD21458.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203689|gb|ABD31499.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375133|dbj|BAF68393.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. Newman] gi|160369232|gb|ABX30203.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861568|gb|EEV84370.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5948] gi|259160068|gb|EEW45101.1| tRNA pseudouridine synthase A [Staphylococcus aureus 930918-3] gi|259163346|gb|EEW47904.1| tRNA pseudouridine synthase A [Staphylococcus aureus D30] gi|269941808|emb|CBI50218.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus TW20] gi|282593556|gb|EFB98549.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9765] gi|294824131|gb|EFG40555.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9754] gi|302752092|gb|ADL66269.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341935|gb|EFM07839.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198251|gb|EFU28582.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS01] gi|320140243|gb|EFW32102.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA131] gi|320143513|gb|EFW35294.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA177] gi|329314902|gb|AEB89315.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus T0131] gi|329732055|gb|EGG68410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21189] Length = 267 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|313890306|ref|ZP_07823938.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus SPIN 20026] gi|313121292|gb|EFR44399.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus SPIN 20026] Length = 249 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 MIRY II Y+GS + G+QRQ N +IQ IEK + L G+ + + GAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGSQFSGFQRQTNARTIQEEIEKTLMRLNKGKTITIQGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V FHAR+S ++Y + + Sbjct: 61 QVIHFDLAERRDLEKLRFALDT--QTPEDIDVISVEEVSNDFHARYSKHLKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P LD +++A + LVG HDFT F + + +RT+ D N Sbjct: 119 RPKNPMMRQYATHYPYPLDFSLIKLAIKDLVGTHDFTGFTAAGTSVENKVRTLYQADCNF 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S + FL+ Q+R+ VG+L +G+ + + L+ ++R+ GP Sbjct: 179 DSHRQFLIFTFTGNGFLYKQVRNMVGTLLKIGNQRMPVEQVRIILEQKNRQLAGPTIAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|76787537|ref|YP_328824.1| tRNA pseudouridine synthase A [Streptococcus agalactiae A909] gi|123602597|sp|Q3K3S9|TRUA_STRA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76562594|gb|ABA45178.1| tRNA pseudouridine synthase A [Streptococcus agalactiae A909] Length = 258 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 130/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + L +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P + E M+ A + LVG HDFT F + + +RTI FD Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMKEAIKDLVGTHDFTGFTASGTSVENKVRTI--FDAKI 176 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 177 QFEASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAA 236 Query: 236 PEGLYFDSVEYS 247 GLY + Y Sbjct: 237 GNGLYLKEIIYE 248 >gi|224024234|ref|ZP_03642600.1| hypothetical protein BACCOPRO_00957 [Bacteroides coprophilus DSM 18228] gi|224017456|gb|EEF75468.1| hypothetical protein BACCOPRO_00957 [Bacteroides coprophilus DSM 18228] Length = 249 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 124/248 (50%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + ++G+ Y GWQ Q NG+S+Q ++ KA+ + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLSFDGTNYHGWQIQPNGASVQETLMKALSTFLRREIEVVGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD E ++ LN L I++ + V + HARF A R+Y Y I TR+ Sbjct: 61 VAHFDFDTELDGEVVTDKLNRLLPPD--IAVYGVRRVKPEAHARFDATSRTYKYYIHTRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVN 178 P +G +W I + LD E M AAQ L DFT+F +H + I ++ Sbjct: 119 DP--FRRGYSWRIFQPLDFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCRIMLARWEQT 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A FL +R+ VG+L VG GK T + ++ ++R G P Sbjct: 177 GDGEWV-FTIRADRFLRNMVRAVVGTLVEVGRGKLTVDGFRRVIEEKNRCSAGTSVPGHA 235 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 236 LYLTDVSY 243 >gi|225570923|ref|ZP_03779946.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM 15053] gi|225160385|gb|EEG73004.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM 15053] Length = 282 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I Y+G+ Y GWQ Q NG +I+ + + +TGE + V GA RTDSGVHAL VA Sbjct: 38 RIRLVIAYDGTDYCGWQIQPNGITIEEVLNGVLTKLTGEDIHVIGASRTDSGVHALGNVA 97 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF-SAIRRSYLYRIITRQA 121 FD P + ALN ++ I I+ V +H R+ + ++Y Y I Sbjct: 98 VFDTASSIPPERMAYALNQ--RLPKDIVIVRSDEVPAGWHPRYRDVVIKTYEYHIYNAPV 155 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L++ + I L+ E MR A++L+G HDF +F ++ +RT+ ++S G Sbjct: 156 QNPLKRRTSTHISFPLNVEKMREGAKYLIGEHDFASFCNVRTSVKDTVRTVTELRIDSDG 215 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I +R+ FL+ +R G+L VG G + +++ L+A++R G PP GL Sbjct: 216 PEIIMRITGNGFLYNMVRIIAGTLIRVGRGFYEPEKVKEILEAKERTGAGVTVPPNGLVL 275 Query: 242 DSVEYS 247 ++Y Sbjct: 276 VEIDYG 281 >gi|160903290|ref|YP_001568871.1| tRNA pseudouridine synthase A [Petrotoga mobilis SJ95] gi|189030138|sp|A9BGW7|TRUA_PETMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160360934|gb|ABX32548.1| tRNA pseudouridine synthase A [Petrotoga mobilis SJ95] Length = 245 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 5/238 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+GS ++G+Q Q ++Q EKA+ ++ + + + GRTD+GVHA+ QV F + Sbjct: 8 VMYDGSNFYGYQSQPTFRTVQDEFEKALKVIFKKEIPSYACGRTDTGVHAVGQVISFKVE 67 Query: 68 REWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 E + K ALNA L + + + + V + F+ R A +R Y Y I + P Sbjct: 68 NENMTEKNIKDALNAIL--PEDVYVKEVKEVKEGFNPRAEAKKRIYHYFIYISEDPNIFL 125 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-GNLIE 185 + R W IP +L+ E MR AA++ G HDFT+F++ + + +PIRTI + +LI Sbjct: 126 RDRVWWIPFALNLEKMRQAAKYFEGEHDFTSFKTGNDE-RNPIRTIYRVRIIELRKDLIL 184 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 IRV +SFL +R+ VGSL VG W +++ L+A+ R AP +GLYF S Sbjct: 185 IRVEGKSFLKRMVRNIVGSLVKVGTDVWEVEKIQEILEAKKRALAPASAPAQGLYFYS 242 >gi|229067907|ref|ZP_04201224.1| tRNA pseudouridine synthase A [Bacillus cereus F65185] gi|228715266|gb|EEL67125.1| tRNA pseudouridine synthase A [Bacillus cereus F65185] Length = 252 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 126/251 (50%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW + ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTSLSLEEWQWI---NALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQNDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|260887817|ref|ZP_05899080.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|330838710|ref|YP_004413290.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|260862493|gb|EEX76993.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|329746474|gb|AEB99830.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] Length = 258 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 6/245 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 C+ + Y+G+ Y G+QRQ ++Q +E+ + LV G+ + + AGRTD+GVHA+ QV + Sbjct: 17 CLTVAYDGTAYHGFQRQSPPIRAVQNVLEEKLALVFGDAIELAAAGRTDAGVHAMGQVVN 76 Query: 64 FDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +P + +A+N+ L I + + F AR SA +SY+YRI P Sbjct: 77 F-FTDGRIPTERIVRAMNSVL--PPDIVVKAAREEGRDFSARHSAKSKSYIYRIQEGDTP 133 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-G 181 + AW + LD M AA L+G HDF+ FR+ P+RT+ + G Sbjct: 134 NPFSERYAWYVGTPLDLAAMNEAAALLLGTHDFSAFRAAGGAPMLPVRTMYSAEGRRIEG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 IE R A FL+ R+ VG+L VG G+ T D L +++RK AP GL+ Sbjct: 194 ERIEFRFHANGFLYHMARNIVGTLVDVGKGRRTRADFAAILASRERKRASATAPACGLFL 253 Query: 242 DSVEY 246 +SVEY Sbjct: 254 ESVEY 258 >gi|320451375|ref|YP_004203471.1| tRNA pseudouridine synthase A [Thermus scotoductus SA-01] gi|320151544|gb|ADW22922.1| tRNA pseudouridine synthase A [Thermus scotoductus SA-01] Length = 254 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ+ G ++QG +E+ + G + AGRTD+GVHAL Sbjct: 1 MRRILILTEYDGTHFAGLQRQRTGLRTVQGELER-VLPGIGALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFDL + +ALN L + + ++ V FHAR A+ R+YLYRI+ R Sbjct: 60 MPFHFDLGSRIPTEKIPQALNRLL--PEDLKVVAAREVAPDFHARKDALWRAYLYRILLR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L + RA + LD +R A L GRH+F F +A R + + Sbjct: 118 SHPSPLLRHRALWLRHPLDLAAIREALSFLPGRHNFLGFAKEEVRAGE--RELYEARMEE 175 Query: 180 F----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G + +SFL Q+R VG+L VG GK + + LQ QDR + GP AP Sbjct: 176 VEGEAGRELRFYFRGQSFLRGQVRGMVGTLLEVGLGKRSPESIRLILQTQDRGQAGPSAP 235 Query: 236 PEGLYFDSVEYS 247 P+GLYF Y Sbjct: 236 PQGLYFLEAAYP 247 >gi|225175641|ref|ZP_03729635.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1] gi|225168970|gb|EEG77770.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1] Length = 246 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+G+GY G+Q QKN ++Q +E+AI V G+ V + +GRTD+GVHA Q Sbjct: 1 MPNIKLTLGYDGTGYHGFQLQKNAVTVQQKLEEAIEKVMGQKVRITASGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F P + ALNA L I I IV FHARF A+ ++Y Y I Sbjct: 61 VINFFAQTGIPPQRIPHALNAVL--PRDIVIYAAEIVSDSFHARFDAVGKTYTYTIDNGA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + A+ + LD M+ AA L G+HDFT+F + + +R + DV Sbjct: 119 HPQVLSRHHAYHVRFPLDANLMKQAAATLQGKHDFTSFMASGSSVKTTVRNLYRLDVEIN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I A FL+ +R G+L VG GK +L + A++R G P GL Sbjct: 179 WPYITITAAADGFLYNMVRIIAGTLIEVGRGK-RDHNLGPVIDAKNRHRAGWTVPAHGLV 237 Query: 241 FDSVEYS 247 VEY+ Sbjct: 238 LREVEYN 244 >gi|256852067|ref|ZP_05557454.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 27-2-CHN] gi|260661364|ref|ZP_05862277.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 115-3-CHN] gi|256615479|gb|EEU20669.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 27-2-CHN] gi|260547819|gb|EEX23796.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 115-3-CHN] Length = 262 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 135/251 (53%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P + ALN+ + I + IV++ FH ++S + Y Y + Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSMMPTD--IIFKDAEIVNEDFHVQYSTHGKWYRYIVNQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 + ++ P L+ M+ AA L+G HDFT+F + Q +RTI + + Sbjct: 119 DRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIW 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 S N I + FL+ +R VG+L +G+ + DL++ + A+DR+E AP Sbjct: 179 QKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVINTAPA 238 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 239 SGLYLYHVFYE 249 >gi|196041154|ref|ZP_03108450.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] gi|196028089|gb|EDX66700.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] Length = 252 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P SL+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LVSKTADVFRRNYVYQYPYSLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|218230830|ref|YP_002364991.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228950690|ref|ZP_04112824.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229077443|ref|ZP_04210092.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2] gi|229148551|ref|ZP_04276807.1| tRNA pseudouridine synthase A [Bacillus cereus m1550] gi|229176742|ref|ZP_04304146.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W] gi|218158787|gb|ACK58779.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228606785|gb|EEK64202.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W] gi|228634967|gb|EEK91540.1| tRNA pseudouridine synthase A [Bacillus cereus m1550] gi|228705869|gb|EEL58206.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2] gi|228809041|gb|EEM55526.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 252 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 126/251 (50%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW + ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQWI---NALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQNDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|191639397|ref|YP_001988563.1| tRNA pseudouridine synthase A [Lactobacillus casei BL23] gi|239630320|ref|ZP_04673351.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067471|ref|YP_003789494.1| pseudouridylate synthase [Lactobacillus casei str. Zhang] gi|238693010|sp|B3WAI6|TRUA_LACCB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190713699|emb|CAQ67705.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Lactobacillus casei BL23] gi|239527932|gb|EEQ66933.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439878|gb|ADK19644.1| Pseudouridylate synthase [Lactobacillus casei str. Zhang] gi|327383485|gb|AEA54961.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei LC2W] gi|327386676|gb|AEA58150.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei BD-II] Length = 247 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + + I IL IVD FHAR+SA + YLYR+ Sbjct: 61 QVISFDYPGNIPAESMLKAMNSLMPLD--IEILKAEIVDADFHARYSAKGKRYLYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N I FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 179 DPVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|227533991|ref|ZP_03964040.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188368|gb|EEI68435.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 254 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 8 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 67 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + + I IL IVD FHAR+SA + YLYR+ Sbjct: 68 QVISFDYPGNIPAESMLKAMNSLMPLD--IEILKAEIVDADFHARYSAKGKRYLYRVARG 125 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 126 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 185 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N I FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 186 DPVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 245 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 246 GLYLKEVYY 254 >gi|224369316|ref|YP_002603480.1| TruA1 [Desulfobacterium autotrophicum HRM2] gi|223692033|gb|ACN15316.1| TruA1 [Desulfobacterium autotrophicum HRM2] Length = 246 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 124/245 (50%), Gaps = 5/245 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+G+ Y GWQ Q N ++Q IEKA+ + + + + G+GRTD+GVHAL QVA+ Sbjct: 5 FKLTLEYDGTPYSGWQVQNNCPTVQEEIEKALSRMLNQPIRISGSGRTDAGVHALGQVAN 64 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F L ++LN+ LK I + VD+ FH+R+SA + Y Y + R+ P Sbjct: 65 FQAATTIGAAQLKRSLNSLLK--GPIVVHECRKVDQSFHSRYSARAKEYHYHFLNREDPC 122 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVNSFG 181 + + W I L M + G HDF F S+ +RT+ F+ + Sbjct: 123 GVGRNYVWHIRTPLSIPAMEECCPIITGTHDFKAFEGSGSPRSTTVRTLFSTGFERTA-E 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ FL +R+ VG+L L G GK T + + L+ +DR G AP +GL+ Sbjct: 182 DRFTFKIKGDGFLRFMVRNIVGTLVLAGAGKITPENFKTILEGKDRGRAGATAPAKGLFL 241 Query: 242 DSVEY 246 V Y Sbjct: 242 VEVFY 246 >gi|195978825|ref|YP_002124069.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689837|sp|B4U545|TRUA_STREM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|195975530|gb|ACG63056.1| tRNA pseudouridine synthase A TruA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 249 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAG TD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGITDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L I FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEIAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|229170993|ref|ZP_04298594.1| tRNA pseudouridine synthase A [Bacillus cereus MM3] gi|228612533|gb|EEK69754.1| tRNA pseudouridine synthase A [Bacillus cereus MM3] Length = 252 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIKQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEISSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+ + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQGDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|197303593|ref|ZP_03168631.1| hypothetical protein RUMLAC_02321 [Ruminococcus lactaris ATCC 29176] gi|197297327|gb|EDY31889.1| hypothetical protein RUMLAC_02321 [Ruminococcus lactaris ATCC 29176] Length = 264 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 124/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y ++I Y+G+ Y GWQRQ N +IQG +E I G V V+G+GRTD+GVHA Sbjct: 13 MRTYRLVIAYDGTAYQGWQRQANTEMTIQGILESCISKAAGYAVEVNGSGRTDAGVHARG 72 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + +N L I I + FHAR SA+ + Y+Y+I T Sbjct: 73 QTASVVLHGKAEDGFFTEKVNKLL--PPDIRIREAGLEKNGFHARKSAVGKRYVYQIDTD 130 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ + PK LD M+ AA+ L G H+F + + S+ RTI V Sbjct: 131 EKPDVFDRRYTYHFPKKLDIAAMQQAAELLTGTHEFAAYTDKKDETSTK-RTIYAIMVGG 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I+ FL+ +R G+L VG G + AL+A+DR + G LAP GL Sbjct: 190 QGGRINIQYEGTGFLYHMVRILTGTLLEVGMGTRRIESVTIALEAKDRTKVGFLAPARGL 249 Query: 240 YFDSVEYS 247 + D V Y Sbjct: 250 FLDEVYYK 257 >gi|25010174|ref|NP_734569.1| tRNA pseudouridine synthase A [Streptococcus agalactiae NEM316] gi|77414646|ref|ZP_00790784.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 515] gi|42559816|sp|Q8E7Q5|TRUA_STRA3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|23094525|emb|CAD45744.1| Unknown [Streptococcus agalactiae NEM316] gi|77159310|gb|EAO70483.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 515] gi|319744038|gb|EFV96416.1| tRNA pseudouridine synthase A [Streptococcus agalactiae ATCC 13813] Length = 258 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 130/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + L +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P + E M+ A + LVG HDFT F + + +RTI FD Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTI--FDAKI 176 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 177 QFEASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAA 236 Query: 236 PEGLYFDSVEYS 247 GLY + Y Sbjct: 237 GNGLYLKEIIYE 248 >gi|294497016|ref|YP_003560716.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551] gi|295702381|ref|YP_003595456.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319] gi|294346953|gb|ADE67282.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551] gi|294800040|gb|ADF37106.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319] Length = 246 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I+ Y+G+ + G+Q Q N ++Q IE + + + V ++ +GRTD+ VHA Q Sbjct: 1 MKRLKCIVAYDGTHFSGYQVQPNKRTVQLEIEAVLEKMHNKKVPIYASGRTDTNVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD KALN+ L D I + N+ VD FHAR+ + Y Y I+ + Sbjct: 61 VIHFDTNLNIPCDKWKKALNSML--PDDIVMKNVCEVDAHFHARYDVTSKEYRYHILRGE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ P LD M+ A +L+G HDFT+F S + IRTI D+ Sbjct: 119 DRNPFTRSYAYHYPYPLDYSKMKKAITYLLGTHDFTSFCSARTEVEDKIRTIYKIDMYEE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + R V FL+ +R VG+L VG G+ ++ L+++ R G AP +GLY Sbjct: 179 NSQLVFRFVGSGFLYNMVRILVGTLLEVGQGRIEPDAIKDILESKSRPRAGKTAPSQGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LWRVFYD 245 >gi|224477189|ref|YP_002634795.1| tRNA pseudouridine synthase A [Staphylococcus carnosus subsp. carnosus TM300] gi|254764865|sp|B9DM46|TRUA_STACT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222421796|emb|CAL28610.1| putative tRNA pseudouridine synthase A [Staphylococcus carnosus subsp. carnosus TM300] Length = 267 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 119/243 (48%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q++G ++Q EK + + V +H + RTD GVHA+ Q Sbjct: 1 MRILVKISYQGSNFLGFQIQQHGRTVQQQFEKILKRMHKRHVRIHPSSRTDRGVHAIEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L D I + +SIVD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIAPDKWQYAMNSAL--PDDIYVNEVSIVDDDFHCRYDCVGKRYRYKVYQGKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 G SLD E M AAQ +G HDFT F S + S RT+ ++ Sbjct: 119 RDVFMSGLKTFYADSLDLEKMNEAAQQFIGTHDFTGFCSQKTEVESKERTLYQSEIIKTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + V FL+ +R V L VG GK ++ L+A+DRK+ AP EGLY Sbjct: 179 NGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRQPEEVPILLEAKDRKQVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|51340814|sp|Q814C2|TRUA1_BACCR RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 Length = 247 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 61 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRV 115 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 116 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 175 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 176 LIEQDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 235 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 236 HGLYLWEVNYN 246 >gi|229159315|ref|ZP_04287339.1| tRNA pseudouridine synthase A [Bacillus cereus R309803] gi|228624207|gb|EEK81009.1| tRNA pseudouridine synthase A [Bacillus cereus R309803] Length = 252 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+ + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQGDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|218134082|ref|ZP_03462886.1| hypothetical protein BACPEC_01972 [Bacteroides pectinophilus ATCC 43243] gi|217991457|gb|EEC57463.1| hypothetical protein BACPEC_01972 [Bacteroides pectinophilus ATCC 43243] Length = 272 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M Y M +EY+G Y GWQR N +++ I + + +TG V + RT++GVHA Sbjct: 27 MYNYRMTLEYDGGRYAGWQRMGRDDNSNTVSAKITEVLKKMTGSDVEIFCGSRTETGVHA 86 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVA+F L RE+ + LN YL I++L L ++FH++ +A R+Y+YR+ Sbjct: 87 YGQVANFKLDREYRAREIQNYLNRYL--PQDIAVLELEETQERFHSQLNAKSRTYVYRVD 144 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T+ E+ + D + M AAQ+ +G HD+ F ++ + S +R ++ D+ Sbjct: 145 TKNIANVFERRYMYHTFHKPDVDAMNKAAQYFLGEHDYKVFSTVK-KNKSTVRNVESVDI 203 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ +EI + A FLH R +G L +G G+ D+ K L E A Sbjct: 204 YDDGDTLEITIKADDFLHNMARLMIGILLDIGSGERRPEDVRKLLDGVKGVEISKPAESY 263 Query: 238 GLYFDSVEY 246 GLY VEY Sbjct: 264 GLYLLEVEY 272 >gi|30018411|ref|NP_830042.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206972233|ref|ZP_03233180.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|228956583|ref|ZP_04118379.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041047|ref|ZP_04189810.1| tRNA pseudouridine synthase A [Bacillus cereus AH676] gi|229125659|ref|ZP_04254691.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4] gi|229142948|ref|ZP_04271389.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24] gi|229188427|ref|ZP_04315475.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876] gi|296500975|ref|YP_003662675.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] gi|29893951|gb|AAP07243.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206732807|gb|EDZ49982.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|228595101|gb|EEK52872.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876] gi|228640569|gb|EEK96958.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24] gi|228657851|gb|EEL13657.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4] gi|228727344|gb|EEL78538.1| tRNA pseudouridine synthase A [Bacillus cereus AH676] gi|228803148|gb|EEM49970.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322027|gb|ADH04955.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] Length = 252 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|322411078|gb|EFY01986.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 249 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + +TG + V +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHERTVQEEIEKTLQKLTGGQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + D I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDMNKMQEAIKTLVGTHDFTGFTAAGTSVKNKVRTITEATLVQ 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G L+ FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLV-FTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAG 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIHYE 248 >gi|169350826|ref|ZP_02867764.1| hypothetical protein CLOSPI_01600 [Clostridium spiroforme DSM 1552] gi|169292412|gb|EDS74545.1| hypothetical protein CLOSPI_01600 [Clostridium spiroforme DSM 1552] Length = 243 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 131/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R I+ Y+GS ++G+Q Q ++QG I+KA+ + E V +H +GRTD+ VH +Q Sbjct: 1 MVRVKCIVSYDGSKFYGFQIQNKLRTVQGEIQKALKKICEEEVTIHASGRTDAKVHGNKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD +R+ +A+N +L + I IL+ V + FH+R+SA ++ Y Y + T++ Sbjct: 61 VFHFDTLRQMPEKQWKRAINHFL--PNDIYILDSLFVSEDFHSRYSATKKEYRYLLSTKE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E M+ AA +G HDF +F S + Q + IR + + Sbjct: 119 YS-PFETNYIYQYGRPLDLELMKDAANIFIGEHDFASFCS-YDQYGNTIRELYKILIEDN 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I +V F +R VG L VG + T L++ L ++ +++C A P+GLY Sbjct: 177 NGIITFTIVGNGFRRYMVRHIVGGLIQVGAKRITKKRLQEFLDSKGKEKCLFKAKPQGLY 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LYEVFYD 243 >gi|332827815|gb|EGK00550.1| tRNA pseudouridine synthase A [Dysgonomonas gadei ATCC BAA-286] Length = 254 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 123/248 (49%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG S+Q +IEKA+ + V + GAGRTD+GVHA Sbjct: 1 MKRYFIYLSYNGEKYCGWQIQPNGVSVQETIEKALSTLLRMPVSIVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD +E ++L LN+ L I+I + V HARF A R Y Y I T Sbjct: 61 TAHFDSEQEITDLLLLANKLNSLL--PKDIAIQKIIEVKPDAHARFDAESRLYRYYITTD 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + I + D E M A+ L DFT+F +H + TI Sbjct: 119 KDPFL--HHLKYKIYGNPDIEIMNACAKVLFDYEDFTSFSKLHTDVKTNNCTIMLARWEQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + A FL +RS VG+L G GK T+ D + ++A+DR + G P L Sbjct: 177 AGNDYIFTIKANRFLRNMVRSIVGTLLEAGRGKITTDDFRRIIEAKDRCKAGTSVPGHAL 236 Query: 240 YFDSVEYS 247 + + +EY+ Sbjct: 237 FLEEIEYN 244 >gi|328875656|gb|EGG24020.1| hypothetical protein DFA_06158 [Dictyostelium fasciculatum] Length = 403 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 134/260 (51%), Gaps = 35/260 (13%) Query: 21 QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV------------R 68 ++NG SIQ +IE + + + + + G+ RTDSGV++L QVAH DL Sbjct: 80 RENGRSIQYAIEHGLSHIMRQRIQIVGSSRTDSGVNSLCQVAHCDLPNQRYDKKGTIEQE 139 Query: 69 EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSYLYRIIT----RQAPL 123 + P I+ ALN LK + I I+++ VD +FH+R++A R+YLY+I+T + PL Sbjct: 140 QLTPSIIKIALNQQLKRHNHDIRIVSVEKVDNEFHSRYNATSRTYLYKIMTGVRPTEVPL 199 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-------- 175 L K + W I ++LD + M+ A L G HDF + RS CQA SPIR+I H Sbjct: 200 EL-KNKVWPIWETLDIDQMKETASFLQGLHDFDSLRSAKCQAKSPIRSISHIKIIDLPLP 258 Query: 176 DVNSFGN---------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 D+ + N I + + RSFLH Q+R L +G G T +L++ ++ +D Sbjct: 259 DIWRYNNDDSTPPKIQYIGLEIKGRSFLHNQVRIMSSCLAEIGRGHMTLDNLKEIMKGRD 318 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R AP L V Y Sbjct: 319 RTLAPATAPAYPLTLVKVSY 338 >gi|317502836|ref|ZP_07960938.1| tRNA pseudouridine synthase A [Prevotella salivae DSM 15606] gi|315666051|gb|EFV05616.1| tRNA pseudouridine synthase A [Prevotella salivae DSM 15606] Length = 243 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 128/251 (50%), Gaps = 13/251 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG S+Q +++ A+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFIYFCYDGTAYHGWQIQPNGMSVQETLQNALSTILRQRVEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAH DL E I C+ L L + IS+ N+ VD HARFSA R+Y Y I T Sbjct: 61 VAHLDLAEE----IECEQLTYKLNRLLPRDISVFNIQPVDSNMHARFSAKWRTYRYFIHT 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH---F 175 R+ P + ++ P LD E M A+ L DF F ++ + TI Sbjct: 117 RKDPFL--RKYSYESPYLLDFELMEQGAELLKQHQDFAAFCKSGADNTTTLCTIKESKWV 174 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + EI A FL +R+ VG+L L+G + T DLE+ L+ +R + G P Sbjct: 175 KTSPYSWYFEI--TANRFLRNMVRATVGTLILLGRHRITIKDLERILEEGNRSQAGESMP 232 Query: 236 PEGLYFDSVEY 246 L+ +++EY Sbjct: 233 GHALFLENIEY 243 >gi|170017912|ref|YP_001728831.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20] gi|238688937|sp|B1MVY3|TRUA_LEUCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169804769|gb|ACA83387.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20] Length = 260 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 133/256 (51%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTGEIVV---VHGAGRTD 52 M RY I+ Y+GS +FG+Q Q K+G ++QG + KA+ + + V V GA RTD Sbjct: 1 MTRYKAIVAYDGSNFFGFQVQTKSGVEVQRTVQGELNKAVNQMAKQPVTPIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + PV + K LN L I I ++ V FHARFS + Y Sbjct: 61 TGVHAFGQVVHFDLPFDINPVGVSKGLNTLL--PRDILIKAVTKVSDDFHARFSTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T ++ LD ++ A L+G HDF +F + Q +S +RTI Sbjct: 119 FYRVSTTAFTDPFKRHYTGHFHWHLDTSRIQEALPDLIGEHDFASFAASGNQTASTVRTI 178 Query: 173 DHFDVNSFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + + E+ V +FL+ QIR VG L +G+G+ D+++ + +DR++ Sbjct: 179 TSAQLIEKPDEQELVFVFEGNAFLYNQIRIMVGVLLEIGNGRREIHDIQRLIAVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEY 246 AP GLY D ++Y Sbjct: 239 RFTAPASGLYLDEIDY 254 >gi|150392315|ref|YP_001322364.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149952177|gb|ABR50705.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 246 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MI+EY+G+ Y GWQRQ +IQG +E I + G+ + G+GRTD+G HA QVA+F Sbjct: 6 MIVEYDGTKYRGWQRQTATDMTIQGKLEHVISEMVGKKTEIVGSGRTDAGAHAYGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + +N YL I + L +FH+R++ + Y+YRI Sbjct: 66 HTKSTLSIKEMYQYINQYL--PQDIVVKELKEAGPRFHSRYNVKGKKYVYRIWNESTASV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + ++ +P++L+ E M+ AA LVG +DF F S+ + +RTI+ + + Sbjct: 124 FHRKHSYHVPQALNLELMQEAAAKLVGTYDFLPFSSVKKSEKTTVRTIESITIEKKDAFV 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 EI +V FL+ +R G+L +G K T +++ R+ G P +GL+ V Sbjct: 184 EITIVGDGFLYNMVRIITGTLIEIGSKKKKPTYIDEIFSVGKRQNAGETVPSQGLFLIEV 243 Query: 245 EYS 247 Y+ Sbjct: 244 YYN 246 >gi|75906940|ref|YP_321236.1| tRNA pseudouridine synthase A [Anabaena variabilis ATCC 29413] gi|75700665|gb|ABA20341.1| tRNA pseudouridine synthase [Anabaena variabilis ATCC 29413] Length = 282 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 119/245 (48%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++++Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QVA Sbjct: 12 RVALVVQYLGTNFHGWQRQKQHRTVQEEIETAIAKILGHHVTLHGAGRTDSGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD P LN+YL I I + V ++HARFSA R Y Y I T P Sbjct: 72 HFDATGLIPPHKWASVLNSYL--PKDILIKASAAVGDRWHARFSAAYRRYRYTIYTEDRP 129 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W LD M+ A + L+G+H F + S + + + G Sbjct: 130 NLFVTPFSWHYYYAPLDESLMQAALKPLMGKHHLAAFHRAGSKRSHSWVEVQAVECHRSG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ +R VG L VG G+ T + + + Q R+E AP +GL Sbjct: 190 PFIHIEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPSQGLCL 249 Query: 242 DSVEY 246 V Y Sbjct: 250 LRVGY 254 >gi|294340919|emb|CAZ89314.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) (PSU-I) [Thiomonas sp. 3As] Length = 257 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 1/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y G+ Y GWQ Q G +Q +E+A+ G AGRTD+GVHAL QV H D Sbjct: 1 MGLSYGGTSYCGWQSQPGGCGVQDFLERALAQFLGFPTRTVCAGRTDAGVHALGQVVHLD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P + +NA+L D + + + F AR SA +R Y Y + AL Sbjct: 61 TPLQREPSSWVRGVNAFLP-RDMAVQWARTDLPQTFDARRSAYQRRYRYVLRNHPVRPAL 119 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + + LD + +R+AAQ L+G HDF+ FRS CQA SP++T+ ++ G+ + Sbjct: 120 DFAKVGWTHRPLDLDLLRLAAQCLLGEHDFSAFRSSECQALSPVKTLHAIEIARHGHTLV 179 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A +FLH +R+ VGSL VG+G + L + L ++DR+ P P+GLYF + Sbjct: 180 LDLRANAFLHHMVRNIVGSLLAVGNGSKPVSWLAEVLASRDRRLAAPTFMPDGLYFLGPD 239 Query: 246 Y 246 Y Sbjct: 240 Y 240 >gi|288904465|ref|YP_003429686.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34] gi|306830500|ref|ZP_07463669.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306832735|ref|ZP_07465871.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338] gi|325977479|ref|YP_004287195.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731190|emb|CBI12738.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34] gi|304425084|gb|EFM28214.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338] gi|304427346|gb|EFM30449.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177407|emb|CBZ47451.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 249 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + L +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGRLFAGFQRQPSERSVQEELEKTLQKLNSGNPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + V +FHAR++ ++Y + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVEQVSDEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD +M+ A + LVG HDFT F + + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLDLTSMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVAI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++++R GP A Sbjct: 179 DDKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEINY 247 >gi|330718940|ref|ZP_08313540.1| tRNA pseudouridine synthase A [Leuconostoc fallax KCTC 3537] Length = 250 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 130/252 (51%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 M RY I+ Y+GSG+FG+Q Q + ++QG + K + + + V GA RTD+GVHA Sbjct: 1 MPRYKAIVSYDGSGFFGFQVQNDVRTVQGELNKVVNQMAKNPATPIRVIGASRTDTGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV +FDL + K LN L I I + IV+ FHARF++ + Y YR+ Sbjct: 61 LGQVINFDLPFNIPAASVRKGLNTLL--PRDIMIREVEIVNDDFHARFNSHHKRYFYRLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T+ ++ A LD + + A L+G HDF +F + Q + IR I D+ Sbjct: 119 TQDFVDPFKRKYAGHFHWPLDIQRIEKALPDLLGEHDFASFAASGNQTQTTIRRITRADI 178 Query: 178 NSFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + EI + +FL+ QIR VG L +G GK D+++ ++ +DR + A Sbjct: 179 INKPDEQEIVFIFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIQRLIEVKDRSQARFTAA 238 Query: 236 PEGLYFDSVEYS 247 GLY D + YS Sbjct: 239 AAGLYLDEISYS 250 >gi|154494877|ref|ZP_02033882.1| hypothetical protein PARMER_03921 [Parabacteroides merdae ATCC 43184] gi|154085427|gb|EDN84472.1| hypothetical protein PARMER_03921 [Parabacteroides merdae ATCC 43184] Length = 297 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 121/245 (49%), Gaps = 5/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA VA Sbjct: 46 RYFIYLGYNGKKFCGWQIQPNGITVQQSIEEALATLLRQPVPIVGAGRTDAGVHARLMVA 105 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + L + LN L I++ + V HARF AI R+Y Y + TR+ Sbjct: 106 HFDWQEPIADLAFLAEKLNRLL--PKDIAVYRIVPVRPDAHARFDAISRTYKYYVTTRKD 163 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E + IP LD E M A L DFT+F +H + I G Sbjct: 164 PFNYE--LVYKIPGKLDFEAMNKACSVLFDYIDFTSFSKLHTDVKTNNCRIYKAGWEREG 221 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ + A FL +R+ VG+L VG GK T + ++A+DR G AP LY Sbjct: 222 DVWVFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGRAGTSAPGHALYL 281 Query: 242 DSVEY 246 V Y Sbjct: 282 VDVTY 286 >gi|307244438|ref|ZP_07526548.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM 17678] gi|306492195|gb|EFM64238.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM 17678] Length = 253 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 130/243 (53%), Gaps = 6/243 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQVAHF 64 +++ Y G+ Y GWQ+Q + IQG +E A + + + G+GRTD+GVHAL QVA+F Sbjct: 8 LVVAYEGTRYCGWQKQPDSPGIQGELEYACTQAFNKKNINITGSGRTDAGVHALGQVANF 67 Query: 65 DLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 V +PV + + LN ++ I++L V +FHAR SA +++Y Y+I + Sbjct: 68 -TVDTTIPVDKIPEVLNN--RLPKDIAVLRAQEVKSEFHARHSAHKKTYRYQIYPSRIRS 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 K A+ + LD + M+ HL+G+HDF F S S +RTI D+ G+L Sbjct: 125 PFLKDFAYQVKYDLDLDRMKEEIIHLLGQHDFKGFMSSGSDIKSTVRTIYRADIYKRGDL 184 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I I V FL+ +R G++ +G GK T + L + + R G APP+GL+ Sbjct: 185 IVIEVEGNGFLYNMVRIIAGTMVDIGRGKITES-LRDIIGSGVRARAGHTAPPQGLFLVG 243 Query: 244 VEY 246 V+Y Sbjct: 244 VDY 246 >gi|302333855|gb|ADL24048.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus JKD6159] Length = 267 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFKGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R + L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLLAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|307579643|gb|ADN63612.1| tRNA pseudouridine synthase A [Xylella fastidiosa subsp. fastidiosa GB514] Length = 256 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 13/246 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ+ + G S+Q ++++A+ V V V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSEFLGWQQLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFD R W+ L ++ ++++ + FHARFSA R Y YR Sbjct: 61 VVHFDSAVTRPPRAWI-------LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRYR 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + Sbjct: 114 LLNRQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAI 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A Sbjct: 174 SVRRDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTAS 233 Query: 236 PEGLYF 241 GL F Sbjct: 234 ARGLVF 239 >gi|104773573|ref|YP_618553.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422654|emb|CAI97262.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 263 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ QV Sbjct: 5 RYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHSVGQV 64 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD +P + KALN+ L + + + IVDK FH+RFS + Y YR+ Sbjct: 65 IHFDYPGREIPAANMIKALNSQLPMD--MVFTDCEIVDKDFHSRFSVKGKWYRYRVSLDG 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V + Sbjct: 123 FVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNVALD 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A G Sbjct: 183 EENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQACG 242 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 243 LYLYHVFYE 251 >gi|312898257|ref|ZP_07757648.1| tRNA pseudouridine synthase A [Megasphaera micronuciformis F0359] gi|310620754|gb|EFQ04323.1| tRNA pseudouridine synthase A [Megasphaera micronuciformis F0359] Length = 266 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 131/241 (54%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ ++G+QRQ + S+Q +E A+ + G + ++GA RTDSGVHA QV +F Sbjct: 11 LAYDGTEFYGFQRQSSLPSVQQHVEAALSGIYGRNIRIYGAARTDSGVHARGQVVNF-YG 69 Query: 68 REWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + +PV L AL L I +L+ ++ + F R + Y Y ++ P Sbjct: 70 DDTIPVERLPYALKGSL--PPAIVVLSATLERENFSVRHDNKGKHYRYTLVNDGVPDPFM 127 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 AW I K L+CE+M+ AA +L G HDF+ F + +P++T+ V S N I I Sbjct: 128 LRYAWYIRKPLNCESMKEAASYLKGTHDFSAFEGANTTPMNPVKTMYGIFVVSKKNRIII 187 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VV FL+ +R+ G+L VG G+ +S +++ L+ DR++ G AP +GL + V Y Sbjct: 188 DVVGSGFLYHMVRNMAGALVDVGMGRKSSQRIKEILKGGDRRKLGATAPAQGLCLEEVYY 247 Query: 247 S 247 S Sbjct: 248 S 248 >gi|163756865|ref|ZP_02163974.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] gi|161323254|gb|EDP94594.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] Length = 250 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q N S+Q IEKA+ ++ + + GAGRTD+GVHA + Sbjct: 1 MRYFIELSYNGEKYHGWQNQPNAISVQEVIEKALSILLRSNIAIVGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + L LN++L ++I + V + HARF A R+Y Y I++ + Sbjct: 61 AHFDTDVVFNRAELTFKLNSFL--PKDVAIQQIHTVKEDAHARFDATGRTYEYWIVSEKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + A + K LD + M AA+ L DF F H + I ++ G Sbjct: 119 PFYTQS--AHTVYKKLDVDLMNKAAKKLFNYQDFKCFSKTHTDVKTYICQLEKAVWEQKG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + A FL +R+ VG+L VG GK + ++ + ++DR + G P + LY Sbjct: 177 ELLVFTIRADRFLRNMVRAIVGTLLEVGLGKLSIEGFKEIIASRDRNKAGTSVPGKALYL 236 Query: 242 DSVEY 246 +V Y Sbjct: 237 TAVTY 241 >gi|56961964|ref|YP_173686.1| pseudouridylate synthase I [Bacillus clausii KSM-K16] gi|62901228|sp|Q5WLN0|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16] Length = 261 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R + Y+G+ + G+Q Q ++Q +E+A+ + G V V +GRTD+GVHA Sbjct: 1 MSRMACKLSYDGTAFAGYQVQPGKRTVQSEVERALQEIHKGARVPVVASGRTDAGVHACG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P ALN +L D I + N ++V+ FHAR+ A + Y Y I Sbjct: 61 QVLHFDTELTIAPERWVSALNTHL--PDDIVVTNAAMVEPDFHARYGAQAKEYRYYIQCG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A I ++LD M+ AA+HL+G HDF+ F + + + +RTI H V Sbjct: 119 PFENVFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAANTTVTDKVRTITHVAVQP 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R VG+L +G GK +++++ L + R G AP GL Sbjct: 179 SEEGLLISIRGTGFLYNMVRIIVGTLLEIGTGKRVASEMKVILAGKSRNLAGKTAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 CLYEVDY 245 >gi|228919092|ref|ZP_04082471.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840617|gb|EEM85879.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 252 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I R V FL+ +R VG+L +G GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDEIIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|116513570|ref|YP_812476.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275660|sp|Q04BY4|TRUA_LACDB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116092885|gb|ABJ58038.1| Pseudouridylate synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125205|gb|ADY84535.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 262 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ QV Sbjct: 4 RYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHSVGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD +P + KALN+ L + + + IVDK FH+RFS + Y YR+ Sbjct: 64 IHFDYPGREIPAANMIKALNSQLPMD--MVFTDCEIVDKDFHSRFSVKGKWYRYRVSLDG 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V + Sbjct: 122 FVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNVALD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A G Sbjct: 182 EENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQACG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYE 250 >gi|293374636|ref|ZP_06620951.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909] gi|325845439|ref|ZP_08168732.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1] gi|292646726|gb|EFF64721.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909] gi|325488545|gb|EGC90961.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1] Length = 258 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 134/248 (54%), Gaps = 8/248 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + Y+G+ + G+QRQ ++QG IE A+ ++ + V +H +GRTD+GVHA Q Sbjct: 1 MKRIKCTVAYDGTLFNGYQRQPGQRTVQGEIEAALEKISKQPVTIHSSGRTDTGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI-ITR 119 V HFD V +ALN+ L + I I++ V +FH+R+ + Y YR+ + Sbjct: 61 VFHFDSVVNMDGSRYVRALNSIL--PEDIYIIDSQEVHPEFHSRYHGKVKEYRYRLSLNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VN 178 P +++ + SLD E MR A +L+G H+FT+F + +RTI D ++ Sbjct: 119 YNP--MKRNYVYYHRFSLDVEKMREAMTYLLGTHNFTSFCG-NLDDIDKVRTIYQADLID 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L I V FL IR VG+L +G+GK D++ ++A++RK G A P+G Sbjct: 176 EDGELTFI-FVGNGFLRYMIRIMVGTLIQIGEGKKKPEDIKTIIEAKNRKLAGHTAKPQG 234 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 235 LYLQRVDY 242 >gi|295103893|emb|CBL01437.1| pseudouridylate synthase I [Faecalibacterium prausnitzii SL3/3] Length = 254 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFR 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F P L ALN +L I +L + V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPPQKLPLALNQHLPPD--IRVLAVQTVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDVN 178 + +P+ LD M+ AAQ VG HDF + A +RTI V Sbjct: 119 DSPFDAAYYTRVPRRLDESAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ ++I V A +L+ +R G+L VG G+ + D+ L ++DR GP P +G Sbjct: 179 RRGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEYS 247 L+ VEY Sbjct: 239 LFLKRVEYP 247 >gi|300812341|ref|ZP_07092776.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496646|gb|EFK31733.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 262 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ QV Sbjct: 4 RYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKRMTKGQEVRVFGSGRTDAGVHSVGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD +P + KALN+ L + + + IVDK FH+RFS + Y YR+ Sbjct: 64 IHFDYPGREIPAANMIKALNSQLPMD--MVFTDCEIVDKDFHSRFSVKGKWYRYRVSLDG 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V + Sbjct: 122 FVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNVALD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A G Sbjct: 182 EENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQSCG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYE 250 >gi|227894551|ref|ZP_04012356.1| tRNA pseudouridine synthase A [Lactobacillus ultunensis DSM 16047] gi|227863710|gb|EEJ71131.1| tRNA pseudouridine synthase A [Lactobacillus ultunensis DSM 16047] Length = 262 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 136/251 (54%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 + RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ V+V G+GRTD+GVHA+ Sbjct: 2 LTRYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRVIVQGSGRTDAGVHAIG 61 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P + A+N+ + + I IVD+ FHAR+S + Y YR+ Sbjct: 62 QVIHFDYPGKTIPANRMILAMNSMMPMD--IIFNKCQIVDEDFHARYSIKGKWYRYRVSL 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 ++ P L+ M+ AA+ L+G+HDFT+F + Q +RTI + ++ Sbjct: 120 DHFVNPFKRFYTGHFPYQLNISKMQEAARDLLGKHDFTSFAASGGQIEDKVRTIYYVNIE 179 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N + + FL+ +R V +L +G+G+ DL++ + A+DR+E A Sbjct: 180 KDEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNGRRPIHDLKRVISAKDRQEVRQTAQA 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 SGLYLYHVFYE 250 >gi|313123140|ref|YP_004033399.1| tRNA pseudouridine synthase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279703|gb|ADQ60422.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684750|gb|EGD26904.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 262 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ QV Sbjct: 4 RYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKRMTKGQEVRVFGSGRTDAGVHSVGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD +P + KALN+ L + + + IVDK FH+RFS + Y YR+ Sbjct: 64 IHFDYPGREIPAANMIKALNSQLPMD--MVFTDCEIVDKDFHSRFSVKGKWYRYRVSLDG 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V + Sbjct: 122 FVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNVALD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A G Sbjct: 182 EENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQACG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYE 250 >gi|256841433|ref|ZP_05546940.1| tRNA pseudouridine synthase A [Parabacteroides sp. D13] gi|256737276|gb|EEU50603.1| tRNA pseudouridine synthase A [Parabacteroides sp. D13] Length = 265 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ + V + GAGRTD+GVHA +A Sbjct: 16 RYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRKPVPIVGAGRTDAGVHARLMIA 75 Query: 63 HFDLVREWVP-----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD W V L + LN L I++ + V + HARF A R+Y Y + Sbjct: 76 HFD----WEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYVT 129 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T++ P E + +P LD E M A + L DFT+F +H + I H D Sbjct: 130 TKKDPFNHE--LVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHADW 187 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P Sbjct: 188 TQEGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGH 247 Query: 238 GLYFDSVEYS 247 L+ V Y Sbjct: 248 ALFLVDVTYP 257 >gi|218262724|ref|ZP_03477082.1| hypothetical protein PRABACTJOHN_02761 [Parabacteroides johnsonii DSM 18315] gi|218223213|gb|EEC95863.1| hypothetical protein PRABACTJOHN_02761 [Parabacteroides johnsonii DSM 18315] Length = 292 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 123/246 (50%), Gaps = 7/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA VA Sbjct: 46 RYFIYLGYNGKKFCGWQIQPNGITVQQSIEEALATLLRQPVPIVGAGRTDAGVHARLMVA 105 Query: 63 HFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD +E + V L + LN L I++ + V HARF A R+Y Y I TR+ Sbjct: 106 HFDW-KEPIDDLVFLVEKLNRLL--PKDIAVYRIVPVRTDAHARFDATSRTYKYYITTRK 162 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E + IP LD E M A L DFT+F +H + I Sbjct: 163 DPFNYE--LVYKIPGKLDFEAMNKACPVLFDYIDFTSFSKLHTDVKTNNCRIYKAGWEKD 220 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ + A FL +R+ VG+L VG GK T + ++A+DR G AP LY Sbjct: 221 GDVWFFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGRAGTSAPGHALY 280 Query: 241 FDSVEY 246 V Y Sbjct: 281 LVDVTY 286 >gi|119952818|ref|YP_945027.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135] gi|254789604|sp|A1QYG5|TRUA_BORT9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119861589|gb|AAX17357.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135] Length = 245 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 120/240 (50%), Gaps = 2/240 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y+G+Q Q +IQG IEK + ++ + +H AGRTD GVHA Q+ F + Sbjct: 8 ITYDGSLYYGFQIQPKKPTIQGEIEKVLEKISKTKIKIHSAGRTDKGVHARGQIISFYIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L A+N+ LK D I I+ L V+ +F RF A RR Y Y I+ + E Sbjct: 68 INIKLKNLKTAINSLLK--DDIRIIKLKYVEDKFQPRFDAKRRKYSYYILNNENHYPWEG 125 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 RA+ + K L+ + A+ L+G HDFTTF I Q +S ++ I + I Sbjct: 126 YRAYYVKKKLNINRLNEMAEMLIGIHDFTTFSCIRDQTNSKLKEIYYARFKKKNKFIIFE 185 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ SFL +RS VG + + +K L +++RK AP + L+ D V Y Sbjct: 186 IIGSSFLWKMVRSIVGVMIDIEIKNEPVDTFKKILNSKNRKLTRKTAPAKALFLDKVFYE 245 >gi|323340405|ref|ZP_08080662.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644] gi|323092181|gb|EFZ34796.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644] Length = 250 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G+ + G+Q Q N ++Q +E A+ ++ + + ++G+GRTD+GVHAL Q Sbjct: 4 RYKITLAYDGTNFAGFQVQPNQRTVQSVLEAAVNKMSKNSDYITIYGSGRTDAGVHALGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + K LN+ L ++ ++ IV FHARF+ + Y+YR+ + Sbjct: 64 VVHFDFPHDIPAEGMLKGLNSMLPLA--CEVVGCEIVPNDFHARFTTHGKRYMYRVSRGR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ LD E ++ A LVG HDF++F + Q + +RTI V Sbjct: 122 FTNPFKRFYTGHYKYPLDIEKIKEAMPDLVGTHDFSSFVASGSQTKNHVRTIYEATVRED 181 Query: 181 GNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 EI FL+ Q+R V +L +G+GK D + + +DR EC AP G Sbjct: 182 KENDEIIFEFCGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRNECRETAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLKEVYYD 250 >gi|171777516|ref|ZP_02919238.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283226|gb|EDT48650.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + L +G+ V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGRLFAGFQRQPSERSVQEELEKTLQRLNSGQPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + +V FH+R++ ++Y + + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVELVSDDFHSRYNKHSKTYEFLVDSG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI D+ Sbjct: 119 RPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L +++R GP A Sbjct: 179 DEKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLASKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|313903119|ref|ZP_07836513.1| tRNA pseudouridine synthase A [Thermaerobacter subterraneus DSM 13965] gi|313466621|gb|EFR62141.1| tRNA pseudouridine synthase A [Thermaerobacter subterraneus DSM 13965] Length = 345 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 124/242 (51%), Gaps = 6/242 (2%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 ++ Y+G+ + GWQRQ ++Q +E+A+ + G V V AGRTD+GVHA QV H+ Sbjct: 88 VLAYDGTDFAGWQRQAGRRTVQQVVEEALSRLLGHPVRVTAAGRTDAGVHARAQVIHWQT 147 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA-- 124 R + L AL L + + FHAR++A R++Y+Y + +AP+A Sbjct: 148 ARPFPAERLVPALRGLLPLDVAAVAAGEAP--AGFHARYAARRKTYVYHLW--RAPVADP 203 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L + W +P +LD M AA+ L GRHDF F++ + RT+ + G L+ Sbjct: 204 LHRRWQWHLPLALDVAAMAEAARRLEGRHDFAAFKAAGSPVRNTRRTLYRCRLEEHGPLL 263 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL R VG+L +G G+W + ++ L R+ GP AP GL V Sbjct: 264 RIVLEADGFLMHMARGIVGTLVEIGRGRWPAGHVDMLLATGRRQLAGPTAPAHGLVLWRV 323 Query: 245 EY 246 EY Sbjct: 324 EY 325 >gi|29349645|ref|NP_813148.1| tRNA pseudouridine synthase A [Bacteroides thetaiotaomicron VPI-5482] gi|253569984|ref|ZP_04847393.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_6] gi|42559809|sp|Q89ZY4|TRUA_BACTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|29341555|gb|AAO79342.1| tRNA pseudouridine synthase A [Bacteroides thetaiotaomicron VPI-5482] gi|251840365|gb|EES68447.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_6] Length = 269 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 123/251 (49%), Gaps = 11/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q + KA+ V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V HARF A R+Y Y + T + Sbjct: 61 VAHFDHEDVLDTVTVADKLNRLLPPD--ISVYRVRQVKPDAHARFDATARTYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + SLD E M AA+ L DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRYRVYGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKM 176 Query: 181 GN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + IR A FL +R+ VG+L VG GK T K ++ QDR + G AP Sbjct: 177 EGEDTTWVFTIR--ADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAP 234 Query: 236 PEGLYFDSVEY 246 L+ +VEY Sbjct: 235 GNALFLVNVEY 245 >gi|161833682|ref|YP_001597878.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri GWSS] gi|152206172|gb|ABS30482.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri GWSS] Length = 250 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 130/247 (52%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y+G+ ++GWQ QK S+Q +IE + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMF 60 Query: 62 AHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHF+ + + + N++L ++ I I+N+ V K+ HARF+AI R Y YRI Sbjct: 61 AHFEFYEKKILLYRNFLFKFNSFLPLN--IKIINIFTVKKKIHARFTAISRVYEYRISLG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P +L+ WL K + + A+ L D+++F C + I I + + Sbjct: 119 KNPFSLDISWQWLSKKKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHI 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N++ + A +L +RS VG+L +G GK T D L A+DR AP +GL Sbjct: 179 KNNILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRNIIS--APAKGL 236 Query: 240 YFDSVEY 246 + + Y Sbjct: 237 FLTKINY 243 >gi|33862089|ref|NP_893650.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|42559755|sp|Q7TU31|TRUA_PROMP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33634307|emb|CAE19992.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 268 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 128/243 (52%), Gaps = 5/243 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++I+Y+GS + GWQRQKN S+Q +IE +F ++ +I+ +GRTD+GVHA Q Sbjct: 1 MKRVALVIQYDGSYFSGWQRQKNAISVQETIENCLFKISNQIIKTFASGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P+ LN+ ++ TI IL V +HA +SA+ R Y Y I Sbjct: 61 VIHFD-IDFLIPIDRYADVLNS--RLPHTIRILESVEVKSSWHACYSAVYRHYRYVINNN 117 Query: 120 QAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P L L K K LD +M IA ++G HDF F+ S+ + TI + Sbjct: 118 KIPNLFLNKWSWHRYQKYLDEVSMSIALDGMIGEHDFFAFQKSGSNRSTSVTTIKDIKLE 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +LI I + A FL+ +RS VG L LVG+ K T + + + + AP +G Sbjct: 178 RTEDLILIDIKATGFLYGMVRSIVGQLVLVGEKKITPDIFKDRWVLKKKHDVRESAPAKG 237 Query: 239 LYF 241 L F Sbjct: 238 LCF 240 >gi|320548017|ref|ZP_08042298.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812] gi|320447363|gb|EFW88125.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812] Length = 249 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + L +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGGLFAGFQRQPSERSVQEELEKTLQKLNSGTPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + +V FH+R++ ++Y + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVELVSDDFHSRYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI D+ Sbjct: 119 RPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++++R GP A Sbjct: 179 DEKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|320333111|ref|YP_004169822.1| tRNA pseudouridine synthase A [Deinococcus maricopensis DSM 21211] gi|319754400|gb|ADV66157.1| tRNA pseudouridine synthase A [Deinococcus maricopensis DSM 21211] Length = 266 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + ++++G+ + GWQ Q N S+Q + A + + AGRTD+GVHA Sbjct: 13 VRYRLTVQWDGTHFAGWQSQPNARSVQDDLHAAFKALGMQAFRPVAAGRTDAGVHAEAMP 72 Query: 62 AHFDLVREW--VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D + +P +D +++L+ + FHARFS R+Y YR++ Sbjct: 73 VHVDALSASARIPAARLARALNAHLPTD-VAVLDAAPAPAHFHARFSCTERAYSYRVLNA 131 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GRA L+ LD M++AA L+G HDF F + + + +R + +V Sbjct: 132 PQRQPLWAGRALLVHAPLDVAAMQVAATQLLGEHDFAAFATREERQT--VRRLHALEVRP 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+E+ V SFL +R VG+L +VG+G+ ++D+ L + R GP PP GL Sbjct: 190 VGPLLEVHVRGESFLRHMVRGIVGTLLMVGEGRLGASDVAGILVGRARSGAGPNVPPHGL 249 Query: 240 YFDSVEYS 247 YF Y+ Sbjct: 250 YFTDASYA 257 >gi|224531952|ref|ZP_03672584.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116] gi|224511417|gb|EEF81823.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116] Length = 246 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 122/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q ++QG IEKA+ + + + +H +GRTD GVHA Q+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPKKPTVQGEIEKALMKINKKKIKIHSSGRTDKGVHAKGQIITFDIN 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L V FH RF+A +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLKYVKNSFHPRFNAKKRKYRYCILNSNNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L+ N+ A+ L+G HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ D V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISIFETILKSKNRNLARTTAPANALFLDKVYY 245 >gi|28211488|ref|NP_782432.1| tRNA pseudouridine synthase A [Clostridium tetani E88] gi|42559805|sp|Q893H3|TRUA1_CLOTE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|28203929|gb|AAO36369.1| tRNA pseudouridine synthase A [Clostridium tetani E88] Length = 245 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MI+EY+G+ Y GWQ+QK +IQ IE + +TGE + V G GRTD+GVHA VA+F Sbjct: 6 MILEYDGTRYKGWQKQKKDVLTIQDKIETVLSKMTGEDIQVIGCGRTDAGVHAENYVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 ++ + L +L + I + + ++FHAR++ ++Y+YRI + Sbjct: 66 HTNCDFTVDYMLDYLYEFL--PEDIVVKTMKDTSERFHARYNVKSKTYVYRINNNKFRSV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 K A+ + L+ M+ AA+ L+G HDF +F + + S IR I + ++ +I Sbjct: 124 FNKKYAYHDNEKLNISAMKDAAEFLIGTHDFKSFTRLKSNSKSTIRAIKYINITENQGII 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I V FL +R G+L VG D+EK L + R + + P +GL + Sbjct: 184 SIEVNGNGFLLNMVRIVAGALLEVGKENIKPIDIEKMLNEKKRADASLILPAKGLCLKDI 243 Query: 245 EY 246 +Y Sbjct: 244 QY 245 >gi|298695476|gb|ADI98698.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED133] Length = 267 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RNPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAAAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|289663172|ref|ZP_06484753.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 257 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 135/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADGQVQVICAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ V FHARFSA R Y Y Sbjct: 61 QVVHFDSDARREPRGWM-------LGTTARLPPSIAVRWCVPVADDFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTVSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRNLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP A Sbjct: 174 IHVQRIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGERPADWIATLLAGRDRTVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|77406326|ref|ZP_00783390.1| tRNA pseudouridine synthase A [Streptococcus agalactiae H36B] gi|77175064|gb|EAO77869.1| tRNA pseudouridine synthase A [Streptococcus agalactiae H36B] Length = 258 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 129/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + L +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEILVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P + E M+ A + LVG HDFT F + + +RTI FD Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMKEAIKDLVGTHDFTGFTASGTSVENKVRTI--FDAKI 176 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 177 QFEASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAA 236 Query: 236 PEGLYFDSVEYS 247 GLY + Y Sbjct: 237 GNGLYLKEIIYE 248 >gi|22536285|ref|NP_687136.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 2603V/R] gi|76798489|ref|ZP_00780725.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 18RS21] gi|77412040|ref|ZP_00788367.1| tRNA pseudouridine synthase A [Streptococcus agalactiae CJB111] gi|42559812|sp|Q8CX20|TRUA_STRA5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22533107|gb|AAM99008.1|AE014196_4 tRNA pseudouridine synthase A [Streptococcus agalactiae 2603V/R] gi|76586154|gb|EAO62676.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 18RS21] gi|77161897|gb|EAO72881.1| tRNA pseudouridine synthase A [Streptococcus agalactiae CJB111] Length = 258 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 129/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + L +G V++HGAGRTD GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDVGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P + E M+ A + LVG HDFT F + + +RTI FD Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTI--FDAKI 176 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 177 QFEASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAA 236 Query: 236 PEGLYFDSVEYS 247 GLY + Y Sbjct: 237 GNGLYLKEIIYE 248 >gi|301309451|ref|ZP_07215393.1| tRNA pseudouridine synthase A [Bacteroides sp. 20_3] gi|300832540|gb|EFK63168.1| tRNA pseudouridine synthase A [Bacteroides sp. 20_3] Length = 252 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 125/252 (49%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ + V + GAGRTD+GVHA Sbjct: 1 MRRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRKPVPIVGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 +AHFD W I L + LN L I++ + V + HARF A R+Y Y Sbjct: 61 IAHFD----WEGPIEDLAFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYY 114 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I TR+ P E + +P LD E M A + L DFT+F +H + I H Sbjct: 115 ITTRKDPFNYE--LVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHA 172 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P Sbjct: 173 GWTQEGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVP 232 Query: 236 PEGLYFDSVEYS 247 L+ V Y Sbjct: 233 GHALFLVDVTYP 244 >gi|300119545|ref|ZP_07057089.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|298723017|gb|EFI63915.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] Length = 252 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|282917564|ref|ZP_06325316.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus D139] gi|283767311|ref|ZP_06340226.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus H19] gi|282318526|gb|EFB48884.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus D139] gi|283461190|gb|EFC08274.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus H19] Length = 267 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAAAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|317472004|ref|ZP_07931336.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA] gi|316900408|gb|EFV22390.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA] Length = 252 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 122/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q ++I+G + + + + GE + V GA RTDSGVHAL Sbjct: 1 MKRIKLEVAYDGTNYCGWQIQPKDTTIEGVLNEKLGSLLGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD E + +ALN ++ D I I + S V FH R+ R++Y Y I + Sbjct: 61 VAVFDTETEIPGERIARALNQ--RLPDDIVIQSSSEVKDDFHPRYQDTRKTYEYTIYNAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E MR AA+ +G HDF +F + + +RTI +V Sbjct: 119 FDNPVTARHHHFVYVPLDVERMRTAARCFLGEHDFLSFSTTGSPTKTTVRTIYECEVRQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L +G G+ + + R + GP AP +GL Sbjct: 179 GRYITMRVTGNGFLYNMVRMMAGTLISIGRGRRDPEWVRELFLHPKRGKAGPNAPAKGLT 238 Query: 241 FDSVEY 246 ++ Y Sbjct: 239 LINIHY 244 >gi|49183176|ref|YP_026428.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|49476722|ref|YP_034493.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145077|ref|YP_081752.1| tRNA pseudouridine synthase A [Bacillus cereus E33L] gi|165873347|ref|ZP_02217948.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167642077|ref|ZP_02400301.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|196046214|ref|ZP_03113441.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|270000591|ref|YP_003329029.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] gi|291612229|ref|YP_003541012.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|62901423|sp|Q63H59|TRUA1_BACCZ RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|62901430|sp|Q6HPM7|TRUA1_BACHK RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|62901432|sp|Q6I4Q2|TRUA1_BACAN RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|49177103|gb|AAT52479.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|49328278|gb|AAT58924.1| tRNA pseudouridine synthase A (pseudouridylate synthase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978546|gb|AAU20096.1| tRNA-pseudouridylate synthase I [Bacillus cereus E33L] gi|164710915|gb|EDR16491.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167509964|gb|EDR85386.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|196022959|gb|EDX61639.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|224552852|gb|ACN55064.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|269850235|gb|ACZ49980.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] Length = 247 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 61 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 115 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 116 LVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 175 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 176 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 235 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 236 HGLYLWQVNYN 246 >gi|268608385|ref|ZP_06142112.1| tRNA pseudouridine synthase A [Ruminococcus flavefaciens FD-1] Length = 257 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 125/242 (51%), Gaps = 2/242 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y G+ Y G+Q Q N ++QG++EK + V E V + G RTD+GVHA + Sbjct: 6 VTIAYRGTNYHGFQIQNNAVTVQGTLEKHLSKVLNEPVSITGCSRTDTGVHANMFCFNVK 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + C+ +N ++ D ISIL+ V FHARF + Y+Y++ ++ Sbjct: 66 TNSRISTLGFCRGVNG--ELPDDISILSCEEVPIDFHARFDCKGKEYIYKMHCSESKDPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + D E R AAQ+ VG HDF++F + S+ +RTI F + + G+ + Sbjct: 124 APDMKFHYRRPFDIEAARKAAQYFVGTHDFSSFCADCTNVSTTVRTIYSFKIENSGDTVI 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + V FL+ IR G+L V + +++ D+ + L+A+DR + G A GLY + V Sbjct: 184 MLVKGNGFLYNMIRIMAGTLIDVSEKRFSPDDMPRILEAKDRLQAGRTAMAHGLYLNRVF 243 Query: 246 YS 247 YS Sbjct: 244 YS 245 >gi|170689686|ref|ZP_02880864.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|177656196|ref|ZP_02937177.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|190567334|ref|ZP_03020248.1| tRNA pseudouridine synthase A [Bacillus anthracis Tsiankovskii-I] gi|196036037|ref|ZP_03103438.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|218901347|ref|YP_002449181.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|225862194|ref|YP_002747572.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|227812815|ref|YP_002812824.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|228912881|ref|ZP_04076528.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925395|ref|ZP_04088491.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228943947|ref|ZP_04106332.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089273|ref|ZP_04220554.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42] gi|229119804|ref|ZP_04249065.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201] gi|229182536|ref|ZP_04309787.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1] gi|229604554|ref|YP_002864793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|254686641|ref|ZP_05150500.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066] gi|254726279|ref|ZP_05188061.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055] gi|254735284|ref|ZP_05192992.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western North America USA6153] gi|254739476|ref|ZP_05197174.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254755530|ref|ZP_05207564.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum] gi|301051879|ref|YP_003790090.1| tRNA pseudouridine synthase A [Bacillus anthracis CI] gi|170666357|gb|EDT17142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|172079844|gb|EDT64958.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|190561461|gb|EDV15432.1| tRNA pseudouridine synthase A [Bacillus anthracis Tsiankovskii-I] gi|195991406|gb|EDX55373.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|218535501|gb|ACK87899.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|225789774|gb|ACO29991.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|227005095|gb|ACP14838.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|228600991|gb|EEK58560.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1] gi|228663705|gb|EEL19284.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201] gi|228694112|gb|EEL47794.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42] gi|228815780|gb|EEM62016.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834317|gb|EEM79858.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846817|gb|EEM91822.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268962|gb|ACQ50599.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|300374048|gb|ADK02952.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis str. CI] Length = 252 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|218282056|ref|ZP_03488361.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989] gi|218216974|gb|EEC90512.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989] Length = 247 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 4/242 (1%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 ++ Y+G Y GWQ+Q+N IQ IE+A++ +T E V V +GRTD+GVHA QV HF+ Sbjct: 6 LVSYDGFNYAGWQKQENALGIQQVIEEALYKITKENVDVVASGRTDAGVHAFGQVFHFET 65 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + +ALNA L I IL + FHARFSA+ + Y Y + Sbjct: 66 NKNIPAIQYERALNALL--PKDIRILKTEEMPDDFHARFSAVGKRYDY-YCSYDIKNPFN 122 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIE 185 L+ K LD E M+ A++ +G HDFT+F S P ++TI + ++ G + Sbjct: 123 YKYRNLLTKKLDIEAMKNASKVFLGSHDFTSFASSKIDPRKPRVKTISNIEIIEEGMDVH 182 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 FL Q+R G+L VG K D+++ L A+D+ C A GLY V+ Sbjct: 183 FIFEGTGFLRYQVRMMTGTLIAVGQHKIGVDDVQRMLDAKDKSACRYNASSCGLYLVEVK 242 Query: 246 YS 247 Y+ Sbjct: 243 YN 244 >gi|65317587|ref|ZP_00390546.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012] Length = 257 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 11 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 70 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 71 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 125 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 126 LVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 185 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 186 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 245 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 246 HGLYLWQVNYN 256 >gi|118475910|ref|YP_893061.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|118415135|gb|ABK83554.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] Length = 264 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 18 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 77 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 78 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 132 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 133 LVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 192 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 193 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 252 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 253 HGLYLWQVNYN 263 >gi|146320154|ref|YP_001199865.1| tRNA pseudouridine synthase A [Streptococcus suis 98HAH33] gi|253751190|ref|YP_003024331.1| tRNA pseudouridine synthase A [Streptococcus suis SC84] gi|253753091|ref|YP_003026231.1| tRNA pseudouridine synthase A [Streptococcus suis P1/7] gi|253754913|ref|YP_003028053.1| tRNA pseudouridine synthase A [Streptococcus suis BM407] gi|166229843|sp|A4VZC6|TRUA_STRS2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145690960|gb|ABP91465.1| Pseudouridylate synthase [Streptococcus suis 98HAH33] gi|251815479|emb|CAZ51057.1| tRNA pseudouridine synthase A [Streptococcus suis SC84] gi|251817377|emb|CAZ55113.1| tRNA pseudouridine synthase A [Streptococcus suis BM407] gi|251819336|emb|CAR44702.1| tRNA pseudouridine synthase A [Streptococcus suis P1/7] gi|319757459|gb|ADV69401.1| tRNA pseudouridine synthase A [Streptococcus suis JS14] Length = 249 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + L +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|161506903|ref|YP_001576857.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DPC 4571] gi|260102386|ref|ZP_05752623.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DSM 20075] gi|172048171|sp|A8YTB0|TRUA_LACH4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160347892|gb|ABX26566.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DPC 4571] gi|260083830|gb|EEW67950.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DSM 20075] Length = 263 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ ++V G+GRTD+GVHA+ QV Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRIIVQGSGRTDAGVHAIGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALN+ + I N IV++ FHAR+S + Y YR+ Sbjct: 64 IHFDYPGKTIPANRMILALNSMMPTD--IIFNNCEIVNENFHARYSIKGKWYRYRVSLDH 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ +LD M+ AA+ L+G+HDFT+F + Q +RTI + ++ + Sbjct: 122 FVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSFAASGGQIEDKVRTIYYVNIAKD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N I + FL+ +R V +L +G+G+ DL++ + A+DR+E A G Sbjct: 182 EKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQTAQASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYD 250 >gi|256820760|ref|YP_003142039.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea DSM 7271] gi|256582343|gb|ACU93478.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea DSM 7271] Length = 250 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y+GWQ Q S+Q ++KA+ + + V GAGRTDSGVHAL+ Sbjct: 1 MRYFIELSFFGKNYYGWQFQPKAISVQEVLQKALSTLLRTPIEVVGAGRTDSGVHALQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V E +P L LNA+L I++ ++ V HARF A++R+Y Y I T++ Sbjct: 61 AHFD-VTEALPANLVHKLNAFL--PKDIAVHHIYEVQPNAHARFDALKRTYQYHISTQKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + A +P L+ M AAQ L DF F H + I + Sbjct: 118 AFAYDYAMALTLP--LNVALMNEAAQILFDYTDFQCFSKTHTDVKTYNCKIYEAHWDKVE 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L VG K + TD E + ++ R + G P GLY Sbjct: 176 NQLIFTITADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIILSKKRSKAGASVPACGLYL 235 Query: 242 DSVEY 246 +EY Sbjct: 236 THIEY 240 >gi|225552068|ref|ZP_03773008.1| tRNA pseudouridine synthase A [Borrelia sp. SV1] gi|225371066|gb|EEH00496.1| tRNA pseudouridine synthase A [Borrelia sp. SV1] Length = 246 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 124/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ+ FD+ Sbjct: 8 IAYDGSIYHGFQIQPTKPTVQGEIEKALTKINKKKVKIHSSGRTDKGVHAKRQIITFDIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + ++I IL L V FH RFSA +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYFILNNDNYYPWEG 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A + K L+ N+ A+ L+G+HDFTTF I ++ S R I G I Sbjct: 127 YQAHYVNKKLNINNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIHFAKFKKRGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ D V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLDRVYY 245 >gi|167748465|ref|ZP_02420592.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662] gi|167652457|gb|EDR96586.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662] Length = 252 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 122/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q ++I+G + + + + GE + V GA RTDSGVHAL Sbjct: 1 MKRIKLEVAYDGTNYCGWQIQPKDTTIEGILNEKLGSLLGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD E + +ALN ++ D I I + S V FH R+ R++Y Y I + Sbjct: 61 VAVFDTETEIPGERIARALNQ--RLPDDIVIQSSSEVKDDFHPRYQDTRKTYEYTIYNAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E MR AA+ +G HDF +F + + +RTI +V Sbjct: 119 FDNPVTARHHHFVYVPLDAERMRTAARCFLGEHDFLSFSTTGSPTKTTVRTIYECEVRQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L +G G+ + + R + GP AP +GL Sbjct: 179 GRYITMRVTGNGFLYNMVRMMAGTLISIGRGRKDPEWVRELFLHPKRGKAGPNAPAKGLT 238 Query: 241 FDSVEY 246 ++ Y Sbjct: 239 LINIHY 244 >gi|21283867|ref|NP_646955.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MW2] gi|49487001|ref|YP_044222.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MSSA476] gi|297209968|ref|ZP_06926364.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910980|ref|ZP_07128430.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus TCH70] gi|30913392|sp|Q8NVB7|TRUA_STAAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56749699|sp|Q6G7A2|TRUA_STAAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21205309|dbj|BAB96003.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MW2] gi|49245444|emb|CAG43921.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus MSSA476] gi|296885641|gb|EFH24578.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887960|gb|EFK83155.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus TCH70] Length = 267 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTATAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|225619823|ref|YP_002721080.1| tRNA pseudouridine synthase A [Brachyspira hyodysenteriae WA1] gi|254789605|sp|C0QZT8|TRUA_BRAHW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225214642|gb|ACN83376.1| tRNA pseudouridine synthase A [Brachyspira hyodysenteriae WA1] Length = 249 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I+Y+G+ ++GWQ Q N ++QG I KA+ V GE + ++G GRTD+GVHAL QVA+F Sbjct: 6 ITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKVYGEKITIYGCGRTDAGVHALGQVANFR 65 Query: 66 LVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + VP+ ALN+YL + I+ + F+AR SA R YLY + Sbjct: 66 VPKMLVPINKVHIALNSYL--DRDLRIIKAEEMPDSFNARASATFREYLYIVHNSSTSFP 123 Query: 125 LEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + AW K+ +D + + A++L+G H+FT+F S + S R ++ G+ Sbjct: 124 FYERYAWFYRKNVIDEKLINEYARYLIGEHNFTSFCSTEDENDSKFRYLERVKAIRKGDT 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + +FLH +R VG+L K +E L+++DR + AP GLYF Sbjct: 184 IYFIIRGNAFLHNMVRIIVGTLVEGQKKKKPINFIEDILKSEDRAKAFVTAPAHGLYF 241 >gi|255036264|ref|YP_003086885.1| tRNA pseudouridine synthase A [Dyadobacter fermentans DSM 18053] gi|254949020|gb|ACT93720.1| tRNA pseudouridine synthase A [Dyadobacter fermentans DSM 18053] Length = 248 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 126/246 (51%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQ+Q N +Q +E A+ V V V G+ RTD+GVHA +Q Sbjct: 1 MRYFIEFSYRGTAYNGWQKQNNALGVQEVLEAALAKVLRAPVEVTGSSRTDAGVHAEQQF 60 Query: 62 AHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFDL V ++ LNA + I++ L V + H+RF+A R Y YRI ++ Sbjct: 61 AHFDLPAAIPDVDLMVYKLNAL--VPKDIAVQRLIPVAEDVHSRFAATHRKYEYRITFQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + A + ++LD M AA L+ +DF +F IH ++ TI Sbjct: 119 NPFLTDL--ATQMRRNLDVPRMNEAAALLLAHNDFESFSKIHTNVNNFRCTITESRWVEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ V A FL +R+ VG++ VG K T D E+ + +++RK G AP EGL+ Sbjct: 177 GEMLVFHVKANRFLRGMVRALVGTMLEVGRQKITVDDFEQIILSRNRKNAGAQAPAEGLF 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LVEVGY 242 >gi|146317967|ref|YP_001197679.1| tRNA pseudouridine synthase A [Streptococcus suis 05ZYH33] gi|166229845|sp|A4VT40|TRUA_STRSY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145688773|gb|ABP89279.1| Pseudouridylate synthase [Streptococcus suis 05ZYH33] Length = 249 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + L +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDNVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|313114592|ref|ZP_07800100.1| tRNA pseudouridine synthase A [Faecalibacterium cf. prausnitzii KLE1255] gi|310623056|gb|EFQ06503.1| tRNA pseudouridine synthase A [Faecalibacterium cf. prausnitzii KLE1255] Length = 248 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAQTFQDALQAVLGSRPDIKGCSRTDAGVHALGFK 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L ALN +L I +L+ +V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPAAKLPLALNQHLPPD--IRVLDAQVVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDVN 178 + +P+ LD M+ AAQ VGRHDF + A +RTI V Sbjct: 119 DSPFDAAYYTRVPRHLDEARMQAAAQQFVGRHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+I V A +L+ +R G+L G G+ ++ L+++DR GP P +G Sbjct: 179 REGDEIDIEVTADGYLYNMVRILAGTLCEAGAGRLDPAEIPAILESRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEYS 247 L+ VEY Sbjct: 239 LFLKCVEYD 247 >gi|315641606|ref|ZP_07896674.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] gi|315482647|gb|EFU73175.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] Length = 248 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +IIEY+G+ Y GWQR + +IQG +EK + +TGE + + G+GRTD+G HA QVA+F Sbjct: 6 LIIEYDGTRYQGWQRLGDSDKTIQGKLEKIVSQLTGETIELIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + YL I + ++ V ++FHAR++A+ + Y Y + + P A Sbjct: 66 KTNCNKSLEEMHHFFLTYL--PKDIVVTSIDEVPERFHARYNAVSKQYSYYVRHAELPSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ + + + LD E M A L G HDF F ++ S +RTI+ ++ +I Sbjct: 124 FDRNYHFYVAEPLDWEAMTEACLRLTGAHDFLGFSALKKSKKSTVRTIESIEMEKEEAMI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ +R +G++ VG G+ T ++ QA+ R+ G P +GL+ D V Sbjct: 184 RFVFRGDGFLYKMVRIMMGTILAVGKGEMTVNQIDDIFQAKIRQAAGETVPAQGLFLDGV 243 Query: 245 EYS 247 Y Sbjct: 244 FYE 246 >gi|315223896|ref|ZP_07865742.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea F0287] gi|314946125|gb|EFS98128.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea F0287] Length = 262 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y+GWQ Q S+Q ++KA+ + + V GAGRTDSGVHA + Sbjct: 13 MRYFIELSFFGKNYYGWQSQPKAISVQEVLQKALSTLLRTPIEVVGAGRTDSGVHASQMY 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V E +P L LNA+L I+I ++ V HARF A++R+Y Y I TR+ Sbjct: 73 AHFD-VTEALPANLVHKLNAFL--PKDIAIHHIYEVQPNAHARFDALKRTYQYHISTRKD 129 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + A+ +P L+ M AA+ L DF F H + I + Sbjct: 130 AFAYDYAMAFTLP--LNVALMNEAAEILFDYTDFQCFSKTHTDVKTYNCKIYEAHWDKVE 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L VG K + TD E + ++ R + G P GLY Sbjct: 188 NQLIFTITADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIIISKKRSKAGASVPACGLYL 247 Query: 242 DSVEY 246 +EY Sbjct: 248 THIEY 252 >gi|327182857|gb|AEA31304.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1118] Length = 264 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 134/251 (53%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 + RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Sbjct: 2 LTRYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVG 61 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 62 QVIHFDYPGKTIPANRMILALNSMMPTD--IVFTDCQIVDENFHARYSIKGKWYRYRVSL 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 ++ LD + M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 120 DHFVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSFAASGGQIEDKVRTIYYVNIR 179 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N N I + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 180 KNEEENEIIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQTAQA 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 SGLYLYHVFYD 250 >gi|315037561|ref|YP_004031129.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112] gi|325956034|ref|YP_004286644.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC] gi|312275694|gb|ADQ58334.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112] gi|325332599|gb|ADZ06507.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC] Length = 264 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 134/251 (53%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 + RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Sbjct: 2 LTRYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVG 61 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 62 QVIHFDYPGKTIPANRMILALNSMMPTD--IVFTDCQIVDENFHARYSIKGKWYRYRVSL 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 ++ LD + M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 120 DHFVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSFAASGGQIEDKVRTIYYVNIR 179 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N N I + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 180 KNEEENEIIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQTAQA 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 SGLYLYHVFYD 250 >gi|229083462|ref|ZP_04215810.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44] gi|228699895|gb|EEL52532.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44] Length = 252 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGENVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLTLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A +L+G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYLIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + + L Q+RK G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLDVGQGKLDADSIPEILAKQNRKFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|218440649|ref|YP_002378978.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7424] gi|218173377|gb|ACK72110.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7424] Length = 306 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ N ++Q IE+AI +V G+ V +HGAGRTD+GVHA QVA Sbjct: 12 RVALVIQYLGTHFHGWQRQPNRRTVQEEIERAIAVVIGQPVTLHGAGRTDTGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + P LN+ ++ D I + + V ++HARFSA R Y Y I T + P Sbjct: 72 HFDQISPIPPGRWASILNS--RLPDDIIVRASNRVCDRWHARFSACWRRYRYTIYTDKQP 129 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K +W + L+ M+ A L+G+H F + + I G Sbjct: 130 NLFIKPFSWHYYHQPLEESLMQSALDPLLGKHHLAAFHRANSARTHSWVEIQAAHCYRIG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A FL+ +R VG L VG+ + + D + Q Q R+E AP +GL Sbjct: 190 PFVHIEIQANGFLYGMVRLLVGMLIEVGNKQRSIEDFTRIWQNQRREEVKYAAPAKGLCL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 LRVGYP 255 >gi|227879273|ref|ZP_03997143.1| tRNA pseudouridine synthase A [Lactobacillus crispatus JV-V01] gi|227861167|gb|EEJ68816.1| tRNA pseudouridine synthase A [Lactobacillus crispatus JV-V01] Length = 256 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 132/246 (53%), Gaps = 6/246 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHF 64 M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ QV HF Sbjct: 1 MTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQVIHF 60 Query: 65 DLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D + +P + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 61 DYPGKTIPANRMILAMNSMMPTD--IIFNNCQIVNDDFHARYSIKGKWYRYRVSLDHFVN 118 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--NSFG 181 ++ P LD E M+IAAQ L+G+HDFT+F + + +RTI + + + Sbjct: 119 PFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGRIEDKVRTIYYVKITEDKKD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A GLY Sbjct: 179 NEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHASGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 YHVFYD 244 >gi|25027130|ref|NP_737184.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] gi|23492410|dbj|BAC17384.1| putative tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] Length = 300 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 138/263 (52%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + ++Y+G+ + GW RQ + ++Q +E + +V V + AGRTD+GVHA Sbjct: 19 VRIRLDLDYDGTDFHGWARQGDSDLRTVQKVLEDNLGMVLRAPVELTVAGRTDAGVHAAG 78 Query: 60 QVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ RE + P L + L+ L + I + ++ + F ARFSA+RR Sbjct: 79 QVAHFDIPRESLQQRSIDGDPTKLVRRLSRLLP--EDIRVHGVNYAPEGFDARFSALRRH 136 Query: 112 YLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YRI T A P + AW PK +D + M+ AA L+G HDF F AS+ Sbjct: 137 YVYRITTHPAGPLPTRVRDTAAW--PKPVDIQAMQTAADVLIGLHDFVAFCKAKPNAST- 193 Query: 169 IRTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R + F DV++ L E VVA +F + +RS VGS VG+G+ + L Sbjct: 194 VRELQEFTWHDVSTPTEPQLYEAHVVADAFCWSMVRSLVGSCMAVGEGRRAGDFTAQLLT 253 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A +R P+AP +GL V+Y Sbjct: 254 ATERSPDVPVAPAKGLSLVGVDY 276 >gi|228983397|ref|ZP_04143610.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776387|gb|EEM24740.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 252 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|166030569|ref|ZP_02233398.1| hypothetical protein DORFOR_00232 [Dorea formicigenerans ATCC 27755] gi|166029571|gb|EDR48328.1| hypothetical protein DORFOR_00232 [Dorea formicigenerans ATCC 27755] Length = 244 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 1 MRTYKLTISYDGTRYQGWQRQATTDNTIQHILEWSIGKLVGYRVRVDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L ++N YL + I I+ + ++ FHAR SA + Y Y I R Sbjct: 61 QVASVQLSKLYDVKELKDSINRYL--PEDIRIMKVELMKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P LD E MR AA +++G +FT+F + + P+R + + + S Sbjct: 119 EKPDVFSRRYCYHYPHKLDIEAMREAADYMIGPKNFTSF-TDDSENKDPVRRVTNIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I F++ +R G+L VG G+ ++ + + A+DR G LAP GL Sbjct: 178 NGEKLRITYYGTGFMYHMVRIMTGTLLEVGTGEREASMIPVVIAAEDRSLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|238917621|ref|YP_002931138.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238872981|gb|ACR72691.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 249 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y MII Y+G+ Y+GW+ Q +IQG +E + +TG V V GAGRTD+GVHA Sbjct: 1 MKNYKMIITYDGTRYYGWEHQPTTDMTIQGKLESVLSAMTGTEVEVIGAGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+ + + +C +N YL + I + + I +FH+R++A ++Y Y Sbjct: 61 MVANAHMETKMKEDDICDYMNRYL--PEDICVQEVRIASDRFHSRYNAQGKTYCYTCYVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + +I LD E M+ AA L G HD+ +F S +R I DV+ Sbjct: 119 DKKPVFNRKYVNIIEGKLDVEAMKKAADILTGEHDYASFCGNPKMKKSTVREIYSIDVSL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL +R G+L VG GK T + + L+ ++R G AP +GL Sbjct: 179 KGSFLNLTYHGSGFLQYMVRILSGTLLEVGQGKRTPESMYELLEERNRSLAGATAPAKGL 238 Query: 240 YFDSVEYS 247 V+YS Sbjct: 239 CLLKVDYS 246 >gi|237715548|ref|ZP_04546029.1| tRNA pseudouridine synthase A [Bacteroides sp. D1] gi|262408556|ref|ZP_06085102.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_22] gi|294643196|ref|ZP_06721024.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CC 2a] gi|294809320|ref|ZP_06768031.1| tRNA pseudouridine synthase A [Bacteroides xylanisolvens SD CC 1b] gi|229444257|gb|EEO50048.1| tRNA pseudouridine synthase A [Bacteroides sp. D1] gi|262353421|gb|EEZ02515.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_22] gi|292641462|gb|EFF59652.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CC 2a] gi|294443478|gb|EFG12234.1| tRNA pseudouridine synthase A [Bacteroides xylanisolvens SD CC 1b] Length = 249 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V+ HARF A R+Y Y + T + Sbjct: 61 VAHFDFDELLDEVSVADKLNRLLPPD--ISVYRVCRVNPDAHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + LD M AA+ L DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRVYNQLDYALMNEAARTLFEYTDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|282898331|ref|ZP_06306322.1| tRNA pseudouridine synthase [Raphidiopsis brookii D9] gi|281196862|gb|EFA71767.1| tRNA pseudouridine synthase [Raphidiopsis brookii D9] Length = 292 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 121/246 (49%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK ++Q IE AI V G V +HGAGRTD+GVHA QVA Sbjct: 13 RVALVIQYLGTNFHGWQRQKAQRTVQEEIEIAIASVLGYHVTLHGAGRTDAGVHAAAQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN+YL I I + V + +HARFSA+ R Y Y I T+ P Sbjct: 73 HFNATGHIPAHKWATVLNSYL--PPDILIRASAGVKESWHARFSAVYRRYRYTIYTQALP 130 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W L+ E M+ A LVG+H F S I + G Sbjct: 131 NLFVSPFSWHYYYAPLEEELMQAALTPLVGKHHLAAFHRAGSARSHSWVEIQAVECCRQG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A FL+ +R VG L VG + + D Q +DR++ APP+GL Sbjct: 191 SLVHIEIQANGFLYGMVRLLVGMLVQVGSKQKSLEDFTNIWQTEDREKVKYAAPPQGLCL 250 Query: 242 DSVEYS 247 V Y+ Sbjct: 251 LRVGYN 256 >gi|228937445|ref|ZP_04100091.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970331|ref|ZP_04130990.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976901|ref|ZP_04137313.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407] gi|228782871|gb|EEM31037.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407] gi|228789440|gb|EEM37360.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822278|gb|EEM68260.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937937|gb|AEA13833.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 252 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ + +R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEIKKIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|310644170|ref|YP_003948929.1| tRNA pseudouridine synthase a [Paenibacillus polymyxa SC2] gi|309249121|gb|ADO58688.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa SC2] Length = 261 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 133/261 (50%), Gaps = 22/261 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M CM + Y+G+ Y G+Q Q +G++IQ +E AI+ +TGE + + G+GRTD+GVHA Q Sbjct: 1 MRNLCMKVNYDGTHYDGFQTQPSGNTIQDCLENAIYSLTGERLKITGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V +F +P+ C ALNA+L I + + V FHAR A R++Y Y I Sbjct: 61 VFNFH-TESPIPIHRWCLALNAWLPRD--IIVTDAREVPLSFHARRMAKRKTYRYSINAN 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI------- 172 + P + P +LD M HLVG D+T+F S Q ++ +RTI Sbjct: 118 RFPDIFHRRTQAHHPTNLDVRAMEKGLAHLVGTFDYTSFASRRSQKTNHVRTIYEAYITV 177 Query: 173 DHFDVNSFG-------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 DH SF +I + FL +R +G+L VG+GK + D+ L+A+ Sbjct: 178 DH----SFSRPGSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSPDDIPSILEAK 233 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 +R + GP A L +VEY Sbjct: 234 NRSKAGPTAVGHALTLWNVEY 254 >gi|77409358|ref|ZP_00786059.1| tRNA pseudouridine synthase A [Streptococcus agalactiae COH1] gi|77172030|gb|EAO75198.1| tRNA pseudouridine synthase A [Streptococcus agalactiae COH1] Length = 258 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 130/252 (51%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + L +G V+++GAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIYGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P + E M+ A + LVG HDFT F + + +RTI FD Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTI--FDAKI 176 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 177 QFEASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAA 236 Query: 236 PEGLYFDSVEYS 247 GLY + Y Sbjct: 237 GNGLYLKEIIYE 248 >gi|282899978|ref|ZP_06307939.1| tRNA pseudouridine synthase [Cylindrospermopsis raciborskii CS-505] gi|281195248|gb|EFA70184.1| tRNA pseudouridine synthase [Cylindrospermopsis raciborskii CS-505] Length = 292 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK ++Q IE AI V G V +HGAGRTD+GVHA QVA Sbjct: 13 RVALVIQYLGTNFHGWQRQKAQRTVQEEIETAIASVLGYHVTLHGAGRTDAGVHAAAQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN+YL I I + V + +HARFSA R Y Y I T P Sbjct: 73 HFNATGHIPAHKWATVLNSYL--PPDILIRASAGVKESWHARFSATYRRYRYTIYTEALP 130 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W L+ + M+ A LVG+H F S I + G Sbjct: 131 NLFVSPFSWHYYYAPLEEKLMQAALTPLVGKHHLAAFHRAGSARSHSWVEIQAVECGRQG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A FL+ +R VG L VG + + D Q +DR++ APP+GL Sbjct: 191 SLVHIEIQANGFLYGMVRLLVGMLVQVGSKQKSLEDFTNIWQTEDREKVKYAAPPQGLCL 250 Query: 242 DSVEYS 247 V YS Sbjct: 251 LRVGYS 256 >gi|149797294|ref|YP_001294664.1| tRNA-pseudouridine synthase A [Symbiobacterium thermophilum IAM 14863] Length = 267 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 10/247 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE--IVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ Y G+QRQ NG +IQ +E+A+ VTGE + + AGRTD+GVHA QV H Sbjct: 6 LILAYDGTAYAGFQRQPNGITIQQRLEEALRAVTGEPDLRIGAAAGRTDAGVHARGQVVH 65 Query: 64 FDLVREWVPVILCK---ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +R + + + + ALN +L D I+++ FHAR+ A + Y Y Sbjct: 66 ---LRTYATIPIDRWPAALNGHL--PDDIAVIGAEEAPPDFHARYWAREKRYRYTFCLSP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + + ++ + +D + MR AA LVGRHDF FR+ A + +RTI + Sbjct: 121 YRLPMARLYSYHWHRPVDVDAMRRAAALLVGRHDFAAFRATGGSARTTVRTITRLTLTEE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + V A FL+ +R G+L VG G+ + + +AL+ R++ G PP GL Sbjct: 181 PPFLHLDVTADGFLYNMVRIIAGTLLEVGAGRRSLDRVAQALRHGRREDAGRTLPPHGLC 240 Query: 241 FDSVEYS 247 + V Y Sbjct: 241 LEEVVYG 247 >gi|323465853|gb|ADX69540.1| tRNA pseudouridine synthase A [Lactobacillus helveticus H10] Length = 262 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 RY M + Y+G + G+Q Q + ++QG+IE A+ + G+ ++V G+GRTD+GVHA+ QV Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMSKGKRIIVQGSGRTDAGVHAIGQV 63 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + +P + ALN+ + I N IV++ FHAR+S + Y YR+ Sbjct: 64 IHFDYPGKTIPANRMILALNSMMPTD--IIFNNCEIVNENFHARYSIKGKWYRYRVSLDH 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ +LD M+ AA+ L+G+HDFT+F + Q +RTI + ++ + Sbjct: 122 FVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSFAASGGQIEDKVRTIYYVNIAKD 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N I + FL+ +R V +L +G+G+ DL++ + A+DR+E A G Sbjct: 182 EKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQTAQASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYD 250 >gi|300362359|ref|ZP_07058535.1| tRNA-pseudouridine synthase I [Lactobacillus gasseri JV-V03] gi|300353350|gb|EFJ69222.1| tRNA-pseudouridine synthase I [Lactobacillus gasseri JV-V03] Length = 255 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 133/244 (54%), Gaps = 6/244 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G + G+Q Q ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV HFD Sbjct: 1 MAYDGHLFHGFQIQPKERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQVIHFDY 60 Query: 67 VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + +P + ALNA + I DT+ + IV+ FH ++S + Y Y + + Sbjct: 61 PGKEIPAKNMMLALNALMPI-DTV-FFDSEIVNSDFHVQYSTKGKWYRYIVDQHRFTDPF 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + P LD + M+ AA+ L+G+HDFT+F + Q +RTI + ++ S + + Sbjct: 119 NRFYTGHYPYPLDIDLMQRAAKDLIGKHDFTSFAASGGQIVDKVRTIYYVNITSDPDNKK 178 Query: 186 I--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + FL+ +R VG+L +G+ K D+ + L A+DR+E AP GLY Sbjct: 179 IIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTAPASGLYLQH 238 Query: 244 VEYS 247 V Y Sbjct: 239 VFYE 242 >gi|269792760|ref|YP_003317664.1| tRNA pseudouridine synthase A [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100395|gb|ACZ19382.1| tRNA pseudouridine synthase A [Thermanaerovibrio acidaminovorans DSM 6589] Length = 251 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y GS + G+QRQ N ++QG++E+++ + GE V GAGRTD+GVHA Q Sbjct: 1 MFRYAAQVSYVGSCFAGFQRQPNLVTVQGALEESLSALAGEGVTCTGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ W L A+ A ++ + ++ L+ V FHARF A R Y Y + + Sbjct: 61 VVHFDMPSRWDLERLRLAIRA--RLPRGLEVIRLAEVPGDFHARFDARWREYRYLVWNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + W + + LD +R A +GR DF F + +RT+ V F Sbjct: 119 WCYPHMEPYVWPVRRHLDLGVLRELAGMCLGRRDFGAFCRSADRPDDSVRTMMRCSVRRF 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ A FL IR VG++ V G+ + L+ R G PP+GL+ Sbjct: 179 GHLLVFTFRADGFLTNMIRILVGTMLEVEAGRMSRERFASLLEGGHRSRAGRTCPPQGLF 238 Query: 241 FDSVEY 246 F V Y Sbjct: 239 FWRVGY 244 >gi|223984957|ref|ZP_03635058.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM 12042] gi|223963077|gb|EEF67488.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM 12042] Length = 268 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R+ ++ Y+G Y GWQ Q + G++IQ +I+ AI ++ + V + G+GRTD+ VHA Sbjct: 2 MQRFKAVVSYDGFDYAGWQIQPAERGATIQQTIQDAISVICQQPVSITGSGRTDAQVHAW 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD+ +A+N +L I I ++ VD +FHARF AI + Y YRI Sbjct: 62 GQVFHFDVDFSLNAFQWKRAINGHL--PKDIHIRSVEAVDSRFHARFDAIGKRYEYRIQL 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFD 176 +A + + A+ P +L+ + MR A +L+G HDF++F + +A P RTI + Sbjct: 120 GEANV-FTRRYAFQSPWTLNVQAMREGAAYLIGEHDFSSF-CANSRAEMPDQARTITRLE 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + + FL +R G+L VG G+ D++ LQAQD++ C A P Sbjct: 178 LAEENDQLRLIYEGSGFLRYMVRMMTGTLIEVGRGRLAPQDVQWMLQAQDKQICHFNAKP 237 Query: 237 EGLYFDSVEY 246 +GL V Y Sbjct: 238 QGLTLVEVYY 247 >gi|315656237|ref|ZP_07909128.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493239|gb|EFU82839.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 297 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 134/272 (49%), Gaps = 28/272 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA QV Sbjct: 1 MRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQV 60 Query: 62 AHFDLV----REWVPVILCKALNAYLKIS---------------------DTISILNLSI 96 AHF + R P L L A L+ D + + ++ Sbjct: 61 AHFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATV 120 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V + F ARFSA+ R Y+YRI+ A L + W P LD M +A L+G HDF Sbjct: 121 VPETFDARFSALARHYVYRIVDDLAARNPLSRNYCWWYPTQLDAAAMNTSAAVLLGEHDF 180 Query: 156 TTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F + ++ IRT+ + + + ++EIRV A +F H+ +RS VG+L VG K Sbjct: 181 AAFCKPR-EGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRD 239 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L AL A+ R P+AP GL V+Y Sbjct: 240 TAWLADALAAKARIPEIPVAPALGLTLTQVDY 271 >gi|78048428|ref|YP_364603.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924659|ref|ZP_08186097.1| pseudouridylate synthase I [Xanthomonas perforans 91-118] gi|123743895|sp|Q3BRL0|TRUA_XANC5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78036858|emb|CAJ24551.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544865|gb|EGD16210.1| pseudouridylate synthase I [Xanthomonas perforans 91-118] Length = 257 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ FHARFSA R Y Y Sbjct: 61 QVVHFDSDARREPRGWM-------LGTTARLPPSIAVRWCVPAADDFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTLSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRHLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP A Sbjct: 174 IHVQRIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|296125792|ref|YP_003633044.1| tRNA pseudouridine synthase A [Brachyspira murdochii DSM 12563] gi|296017608|gb|ADG70845.1| tRNA pseudouridine synthase A [Brachyspira murdochii DSM 12563] Length = 247 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 126/238 (52%), Gaps = 4/238 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I+Y+G+ ++GWQ Q N ++QG I KA+ + GE + ++G GRTD+GVHAL QVA+F Sbjct: 6 ITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKIYGEKITIYGCGRTDAGVHALGQVANFR 65 Query: 66 LVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + VP+ ALN+ L + I+ +D F+AR SA R YLY + Sbjct: 66 VPKMLVPINKVHIALNSCL--DRDLRIIKAEEMDDNFNARASATFREYLYVVHNSSTSFP 123 Query: 125 LEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + AW K+ +D + + A++L+G H+FT+F S + S R ++ G+ Sbjct: 124 FYERYAWFYRKNIIDEKLINEYAKYLIGEHNFTSFCSTEDENDSKFRYLEKVKAVRKGDT 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + +FLH +R VG+L K +E L+ ++R E AP GLYF Sbjct: 184 IYFIIKGNAFLHNMVRIIVGTLVEGQKKKMPVNFIEDILKRENRTEAFVTAPAHGLYF 241 >gi|284036658|ref|YP_003386588.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] gi|283815951|gb|ADB37789.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] Length = 252 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 129/247 (52%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQRQ NG S+Q +E A+ V + + + G+GRTD+GVHA +Q Sbjct: 1 MRYFLHLAYKGTKYHGWQRQPNGLSVQEVLETALSTVLRQPIAIVGSGRTDAGVHAGQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +P L ++LN+ I I++ V HARF+A R Y Y+I R+ Sbjct: 61 AHFD-TDVALPTQLLRSLNSM--IPPDIAVYECFPVRPDDHARFTAQSRYYQYQISRRKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDVNS 179 P +G ++ L+ E M AA L+ DF +F + + I+ ++ Sbjct: 118 P--FREGLVYVFTLPLNVELMNEAASRLLHHIDFESFSKVKTDVKTFNCQIEWAYWAQQP 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + A FLH +R+ VG+L VG + + TD E+ + DRK G AP EGL Sbjct: 176 NGDLV-FHIKANRFLHGMVRAIVGTLLAVGQERLSVTDFEQIILDHDRKRAGRAAPAEGL 234 Query: 240 YFDSVEY 246 V Y Sbjct: 235 SLVEVGY 241 >gi|319642589|ref|ZP_07997236.1| pseudouridylate synthase [Bacteroides sp. 3_1_40A] gi|317385823|gb|EFV66755.1| pseudouridylate synthase [Bacteroides sp. 3_1_40A] Length = 251 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA +AHFD Sbjct: 1 MAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMIAHFDYD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 RE V + + LN L I++ + V HARF A R+Y Y + TR+ P + Sbjct: 61 RELDCVQITEKLNRLLPPD--IAVYAVKRVKDDAHARFDATYRTYKYYVTTRKDP--FNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-GNLIEI 186 AW + SLD E M AA+ L DFT+F +H + I H + G Sbjct: 117 HYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVSGTEWVF 176 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ V Y Sbjct: 177 TIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALFLVDVGY 236 >gi|47570254|ref|ZP_00240905.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] gi|47553078|gb|EAL11478.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] Length = 247 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 61 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 115 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 116 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 175 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP Sbjct: 176 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPG 235 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 236 HGLYLWQVNYN 246 >gi|255637177|gb|ACU18919.1| unknown [Glycine max] Length = 370 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 109/189 (57%), Gaps = 13/189 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + IEY G+ + G Q+Q N ++ G +E+A G+ V V + RT +GVHAL V Sbjct: 51 RYLVAIEYIGTRFSGSQKQLNVRTVVGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNVC 110 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L+ D+ + ++++ V FHARF A R Sbjct: 111 HVDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQER 170 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y YR+++ PL+ EK RAW +P+ L M+ A + LVG HDF++FR+ CQA SPI Sbjct: 171 IYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPI 230 Query: 170 RTIDHFDVN 178 RT+D VN Sbjct: 231 RTLDELSVN 239 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%) Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 AR+FL+ Q+R VG LK VG G T D+E+ L A+ P+AP GLY V+Y Sbjct: 309 ARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAASPMAPACGLYLGEVKY 365 >gi|298482201|ref|ZP_07000389.1| tRNA pseudouridine synthase A [Bacteroides sp. D22] gi|298271758|gb|EFI13331.1| tRNA pseudouridine synthase A [Bacteroides sp. D22] Length = 249 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + LN L ISI + V HARF A R+Y Y + T + Sbjct: 61 VAHFDFDEPLDEISVADKLNRLLPPD--ISIYRVCRVRPDAHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + LD M AA+ L DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRVYNQLDYALMNEAARTLFEYTDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|229194532|ref|ZP_04321335.1| tRNA pseudouridine synthase A [Bacillus cereus m1293] gi|228588998|gb|EEK47013.1| tRNA pseudouridine synthase A [Bacillus cereus m1293] gi|324324133|gb|ADY19393.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 252 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ +R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|229153920|ref|ZP_04282050.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342] gi|228629601|gb|EEK86298.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342] Length = 252 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|298383909|ref|ZP_06993470.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_14] gi|298263513|gb|EFI06376.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_14] Length = 269 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 124/252 (49%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q + KA+ V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V HARF A R+Y Y + T + Sbjct: 61 VAHFDHEDVLDTVTVADKLNRLLPPD--ISVYRVRQVKPDAHARFDATARTYKYYVTTAK 118 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + R + SLD E M AA+ L DFT+F +H + I I H + Sbjct: 119 YPFNRQYRCRVY---GSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTK 175 Query: 180 FGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + IR A FL +R+ VG+L VG GK T K ++ QDR + G A Sbjct: 176 MEGEDTTWVFTIR--ADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSA 233 Query: 235 PPEGLYFDSVEY 246 P L+ +VEY Sbjct: 234 PGNALFLVNVEY 245 >gi|186684484|ref|YP_001867680.1| tRNA pseudouridine synthase A [Nostoc punctiforme PCC 73102] gi|186466936|gb|ACC82737.1| tRNA pseudouridine synthase A [Nostoc punctiforme PCC 73102] Length = 282 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 120/245 (48%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QVA Sbjct: 12 RVALVIQYLGTHFHGWQRQKQHRTVQEEIETAIATILGHHVTLHGAGRTDSGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ P LN+YL I I + VD ++HARFSA R Y Y I T Sbjct: 72 HFEATGLIPPHKWATILNSYL--PPDILIRASASVDNRWHARFSAAYRRYRYTIYTEDRL 129 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W LD ++ A + L+G+H F + S + + G Sbjct: 130 NLFVRPFSWHYYYAPLDESLIQAALKPLLGKHHLAAFHRAGSKRSHSWVEVQAVECRRSG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ +R VG L VG G+ T + + + Q R+E APP+GL Sbjct: 190 PFIHIEIQADGFLYGMVRLLVGMLVEVGSGQRTLSSFTELWKEQRREEVKYAAPPQGLCL 249 Query: 242 DSVEY 246 V Y Sbjct: 250 LRVGY 254 >gi|259506738|ref|ZP_05749638.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] gi|42559821|sp|Q8FS31|TRUA_COREF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259165679|gb|EEW50233.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] Length = 282 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 138/264 (52%), Gaps = 23/264 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + ++Y+G+ + GW RQ + ++Q +E + +V V + AGRTD+GVHA Sbjct: 1 MRIRLDLDYDGTDFHGWARQGDSDLRTVQKVLEDNLGMVLRAPVELTVAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ RE + P L + L+ L + I + ++ + F ARFSA+RR Sbjct: 61 QVAHFDIPRESLQQRSIDGDPTKLVRRLSRLLP--EDIRVHGVNYAPEGFDARFSALRRH 118 Query: 112 YLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YRI T A P + AW PK +D + M+ AA L+G HDF F AS+ Sbjct: 119 YVYRITTHPAGPLPTRVRDTAAW--PKPVDIQAMQTAADVLIGLHDFVAFCKAKPNAST- 175 Query: 169 IRTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R + F DV++ L E VVA +F + +RS VGS VG+G+ + L Sbjct: 176 VRELQEFTWHDVSTPTEPQLYEAHVVADAFCWSMVRSLVGSCMAVGEGRRAGDFTAQLLT 235 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 A +R P+AP +GL V+Y Sbjct: 236 ATERSPDVPVAPAKGLSLVGVDYP 259 >gi|86141215|ref|ZP_01059761.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] gi|85831774|gb|EAQ50229.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] Length = 263 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 7/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y+G+ Y GWQRQ ++Q +E+A+ + V V GAGRTD+GVHA + Sbjct: 10 LRYFIEIAYDGTSYHGWQRQPQSITVQEVLEEALSTLLRSEVPVVGAGRTDAGVHATQLF 69 Query: 62 AHFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHF++ + L LN +L + +++ L V + HARF A+RRSY Y+I Sbjct: 70 AHFEIEESYSFEALSHLKFRLNRFL--PEAVAVNALLPVSAEAHARFDAVRRSYEYKIHM 127 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P + +++ K L+ + M AA L+GR DF F + I I + Sbjct: 128 VKNPFLV--NQSYYFEKPLNVDAMNEAAAFLLGRQDFKCFSRSKTDVKTYICEITEARWD 185 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++ + A FL +R+ VG+L +G GK L+ + ++ R E G AP G Sbjct: 186 QDGAQLKFSISADRFLRNMVRAIVGTLLEIGQGKLKPAALKTIIASRTRSEAGASAPAHG 245 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 246 LYLTEVAY 253 >gi|325287217|ref|YP_004263007.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] gi|324322671|gb|ADY30136.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] Length = 251 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 122/245 (49%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQ Q N ++Q +EKA + E + + GAGRTD+GVHA + Sbjct: 1 MRYFVAFSYFGAAYHGWQIQPNAITVQEELEKAFSTLLKEKISLMGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ V L + LN++L D I+I N+ V + HARF+A R+Y Y I T++ Sbjct: 61 AHFNTTPISNTVDLMRRLNSFL--PDDIAIQNIYEVPEDAHARFNATERTYEYLITTQKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ I + LD E M AAQ L+G+ DF F + T+ Sbjct: 119 PFSIVTTH--YIKQKLDIEKMNKAAQLLLGKQDFECFSKSKTDVKTYYCTVKKAIWEQKE 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG GK T + + ++ R E G P + LY Sbjct: 177 DKFVFTITADRFLRNMVRAIVGTLLDVGTGKITIDHIHTIIASKSRAEAGTSVPAKALYL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 TQVLY 241 >gi|48374280|gb|AAT41969.1| putative t-RNA pseudouridine synthase I [Fremyella diplosiphon Fd33] Length = 268 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 122/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+I+Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTD+GVHA QVAHF+ Sbjct: 1 MVIQYLGTHFHGWQRQKQQRTVQEEIETAIAKILGYHVTLHGAGRTDAGVHAAAQVAHFE 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P LN+YL + I I + V ++HARFSA R Y Y I T P Sbjct: 61 ATGLIPPHKWAAVLNSYL--PNDILIRASAGVGNRWHARFSAAYRRYRYTIYTEDQPNLF 118 Query: 126 EKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + +W LD ++ A + L+G+H F + S + + + G LI Sbjct: 119 VRPFSWHYYYAPLDESLIKAALKPLLGKHHLAAFHRAGSKRSHSWVEVQAAECHRSGPLI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG L VG G+ T + + +A+ R+E AP +GL V Sbjct: 179 HIEIQADGFLYGMVRLLVGMLVQVGTGQRTLANFTELWKAERREEVKYAAPAQGLCLLRV 238 Query: 245 EY 246 Y Sbjct: 239 GY 240 >gi|229830208|ref|ZP_04456277.1| hypothetical protein GCWU000342_02317 [Shuttleworthia satelles DSM 14600] gi|229791506|gb|EEP27620.1| hypothetical protein GCWU000342_02317 [Shuttleworthia satelles DSM 14600] Length = 267 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 3/233 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ Y GWQ Q NG S+Q + + + GE + GA RTD+GVH++ F+ Sbjct: 5 IAYDGTEYCGWQVQPNGISVQEVVNAGLSKLLGEEITCVGASRTDAGVHSMGNEILFETK 64 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + ALN YL + I S+ FH RFS ++Y YRI+ R+ P+ + Sbjct: 65 TRIPADKIAYALNQYLP--EDIVCQGSSLAADDFHPRFSESYKTYEYRILNRRFPMPTMR 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SFGNLIEI 186 + LD + M+ AA L+G HDF++F SIH Q+ + +RTI V+ + +LI I Sbjct: 123 RDSLFYHYDLDEKRMQEAADCLLGEHDFSSFASIHTQSKTRVRTIYQALVSRNADDLITI 182 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 R+ FL+ +R G+L VG G + ++ L +R+ GP AP GL Sbjct: 183 RLCGDGFLYNMVRIIAGTLIEVGAGITSPRAFQQILDGMNRELAGPTAPAHGL 235 >gi|222093912|ref|YP_002527962.1| tRNA pseudouridine synthase a [Bacillus cereus Q1] gi|221237960|gb|ACM10670.1| tRNA pseudouridine synthase A [Bacillus cereus Q1] Length = 247 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 61 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 115 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ +R A + +G HDFT+F S +RTI + Sbjct: 116 LLSKTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 175 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 176 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 235 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 236 HGLYLWQVNYN 246 >gi|86609047|ref|YP_477809.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557589|gb|ABD02546.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-2-3B'a(2-13)] Length = 285 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 120/247 (48%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I+Y GS ++GWQRQ ++QG +E+AI G V ++GAGRTD+GVHA QVA Sbjct: 5 RIALRIQYLGSRFYGWQRQAARRTVQGVLEEAIASRAGHPVTLYGAGRTDTGVHAAGQVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD V + LN L + + +L + V +HARFSA R Y Y I+ R+ P Sbjct: 65 HFDTTSGIPAVEWSRVLNDCLP--EDVVVLASAQVPDSWHARFSARWRRYRYLILNRERP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + +W + L E M A L+G H FR + G+ Sbjct: 123 DVFWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLGD 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL--APPEGLY 240 LI I V A FL+ +R VGSL++VG G+ + Q D + APP+GL Sbjct: 183 LISIEVQASGFLYRMMRLLVGSLEVVGRGQLSPAQFVHLWQHNDWSQMRTRYSAPPQGLC 242 Query: 241 FDSVEYS 247 V Y+ Sbjct: 243 LTDVGYA 249 >gi|298345431|ref|YP_003718118.1| tRNA-pseudouridine synthase I [Mobiluncus curtisii ATCC 43063] gi|304390987|ref|ZP_07372939.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235492|gb|ADI66624.1| tRNA-pseudouridine synthase I [Mobiluncus curtisii ATCC 43063] gi|304325870|gb|EFL93116.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 297 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 134/272 (49%), Gaps = 28/272 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA QV Sbjct: 1 MRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQV 60 Query: 62 AHFDLV----REWVPVILCKALNAYLKIS---------------------DTISILNLSI 96 AHF + R P L L A L+ D + + ++ Sbjct: 61 AHFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATV 120 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V + F ARFSA+ R Y+YRI+ A L + W P LD M +A L+G HDF Sbjct: 121 VPETFDARFSALARHYVYRIVDDLAARNPLSRNCCWWYPTQLDAAAMNTSAAVLLGEHDF 180 Query: 156 TTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F + ++ IRT+ + + + ++EIRV A +F H+ +RS VG+L VG K Sbjct: 181 AAFCKPR-EGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRD 239 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L AL A+ R P+AP GL V+Y Sbjct: 240 TAWLADALAAKARIPEIPVAPALGLTLTQVDY 271 >gi|206978041|ref|ZP_03238926.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217957717|ref|YP_002336261.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|229136988|ref|ZP_04265615.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26] gi|206743754|gb|EDZ55176.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217063029|gb|ACJ77279.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|228646526|gb|EEL02733.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26] Length = 252 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE++ V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELIRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ +R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|163847952|ref|YP_001635996.1| tRNA pseudouridine synthase ACD [Chloroflexus aurantiacus J-10-fl] gi|222525832|ref|YP_002570303.1| tRNA pseudouridine synthase ACD [Chloroflexus sp. Y-400-fl] gi|189030130|sp|A9WH95|TRUA_CHLAA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789612|sp|B9LJG1|TRUA_CHLSY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163669241|gb|ABY35607.1| tRNA pseudouridine synthase A [Chloroflexus aurantiacus J-10-fl] gi|222449711|gb|ACM53977.1| tRNA pseudouridine synthase A [Chloroflexus sp. Y-400-fl] Length = 278 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 125/246 (50%), Gaps = 6/246 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +++ Y+G+ + G Q Q + ++QG++E A +T E + AGRTD+GVHA QVAH Sbjct: 5 ALLLAYDGTDFAGSQWQTDIRTVQGALESAWEALTQERRRIVLAGRTDAGVHATGQVAHV 64 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + LNA+L + ++I N+ FHARFSAI+R Y Y I APL Sbjct: 65 QTTTRHNLQTIWRGLNAHLPVD--LAIQNVGEAVPDFHARFSAIQREYRYLIDCAAAPLP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--- 181 + + +LD M A + L G HDF F + S +RT+ V + Sbjct: 123 QLRHQVLHYAGTLDVAAMTAALKLLEGTHDFAAFTTATPAQRSTVRTMYWTRVGDYEWFE 182 Query: 182 -NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ I V A +FL +R VG+L LVG G+ T + L ++DR+ GP AP GL Sbjct: 183 RRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHGLT 242 Query: 241 FDSVEY 246 +V Y Sbjct: 243 LTAVRY 248 >gi|229094864|ref|ZP_04225869.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29] gi|229100941|ref|ZP_04231745.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28] gi|229113818|ref|ZP_04243253.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3] gi|228669689|gb|EEL25096.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3] gi|228682520|gb|EEL36593.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28] gi|228688607|gb|EEL42480.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29] Length = 252 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIFEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|223933386|ref|ZP_03625373.1| tRNA pseudouridine synthase A [Streptococcus suis 89/1591] gi|330832153|ref|YP_004400978.1| tRNA pseudouridine synthase A [Streptococcus suis ST3] gi|223897953|gb|EEF64327.1| tRNA pseudouridine synthase A [Streptococcus suis 89/1591] gi|329306376|gb|AEB80792.1| tRNA pseudouridine synthase A [Streptococcus suis ST3] Length = 249 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + L +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQTHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++ + V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTPEDIDVVQVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTIKAASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQRRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|293402539|ref|ZP_06646674.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304053|gb|EFE45307.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 251 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++ Y+GS Y GWQ+Q N +SIQ IE+A+ + V + +GRTD+GVHA+ Q Sbjct: 1 MARYKAVVSYDGSSYGGWQKQLNTTSIQEVIEQALAKMHKHDVAIVASGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + KALN+ L I I ++ V + FHARF AI + Y Y +I+ Sbjct: 61 VFHFDSEMKIQEKHWIKALNSLL--PKDIRIQSVKQVTEAFHARFDAIGKRYDY-LISND 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS 179 ++ LD M+ A L+G HDFT+F S P ++TI +V Sbjct: 118 ILNPFKENYMAKDAHKLDVAYMQECATVLIGTHDFTSFTSNKIDPRKPRVKTITRLEVLQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FL +R +L G + T D++K L+A+D+ C A P+GL Sbjct: 178 EKDHVHMIFEGNGFLRYMVRMLSQTLIEAGKHRITKADIKKMLEAKDKHACRYKAVPQGL 237 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 238 YLVRVDYA 245 >gi|237786326|ref|YP_002907031.1| tRNA pseudouridine synthase A [Corynebacterium kroppenstedtii DSM 44385] gi|237759238|gb|ACR18488.1| tRNA pseudouridine synthase A [Corynebacterium kroppenstedtii DSM 44385] Length = 298 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 127/262 (48%), Gaps = 21/262 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ + GW RQ + S+QG IE+A V + V + AGRTD+GVHA Q Sbjct: 22 LVRLRLDIAYDGTDFHGWARQNDVRSVQGDIEQAFQTVVRQPVQLVVAGRTDAGVHASGQ 81 Query: 61 VAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ R + P L L+ + I S F ARFSA+RR Y Sbjct: 82 VAHVDIPRGILNTRSIHNDPSTLVSRFARLLRPD--VRIRGCSFAPDGFDARFSALRRHY 139 Query: 113 LYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +YR+ T +A P W P +LD +M AA+ LVG HDF F A++ I Sbjct: 140 VYRVTTNRAGALPTRARDTAVWDRPVNLD--SMNNAAEVLVGLHDFAAFCRARPHATT-I 196 Query: 170 RTIDHFDVNSFGNLI-----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 R + HF + + E RV A +F +RS VG+ VG+GK +E L Sbjct: 197 RDLQHFSWHEVSTAVEPDVYEARVTADAFCWNMVRSIVGASLAVGEGKRPDGFMEDMLAH 256 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R P+AP GL V+Y Sbjct: 257 DSRHPMVPVAPANGLTLTGVDY 278 >gi|228931644|ref|ZP_04094550.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228828072|gb|EEM73800.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 252 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L + I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PNDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|294464718|gb|ADE77866.1| unknown [Picea sitchensis] Length = 382 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 13/188 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + ++Y G+ + G Q+Q N ++QG +E A G+ V + RTD+GVHAL V Sbjct: 30 RYLVAVDYIGTNFAGMQKQPNFRTVQGVLEDAFNKFIGQPVSSASSSRTDAGVHALTNVC 89 Query: 63 HFDLVR-----------EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L K + ISI+++ V FHAR+ A R Sbjct: 90 HVDVERISKRKPGEVLPPHEPEVVKRAVNHFLQKDAGDISIIDVRFVPMTFHARYRAQER 149 Query: 111 SYLYRIITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YRI++ + PL++ EK RAW +P+ L M+ A + LVG HDF++FR+ CQA SPI Sbjct: 150 TYYYRILSGKEPLSIFEKDRAWHVPEDLGLSCMQEACKVLVGHHDFSSFRASGCQAKSPI 209 Query: 170 RTIDHFDV 177 + +D V Sbjct: 210 KILDELRV 217 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%) Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A+SFL+ Q+R VG+LK VG GK + D+E L+A+ P+AP GLY +V+Y Sbjct: 311 AQSFLYHQVRLLVGTLKCVGTGKLSVDDVESILKARTITVAPPMAPACGLYLAAVKY 367 >gi|258406231|ref|YP_003198973.1| tRNA pseudouridine synthase A [Desulfohalobium retbaense DSM 5692] gi|257798458|gb|ACV69395.1| tRNA pseudouridine synthase A [Desulfohalobium retbaense DSM 5692] Length = 254 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 126/256 (49%), Gaps = 18/256 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y G+ + GWQ Q ++QG +E A + + VHGAGRTDSGVHA+ Q Sbjct: 1 MPRLKLVVAYTGTHFAGWQLQPRDRTVQGCLEDAFATLCQHPLRVHGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-- 118 V H D+ E + KALNA L I++ + V FHARFSA + Y Y I T Sbjct: 61 VCHCDIPPEKNHIPWQKALNAIL--PKDIAVCEAAYVRDDFHARFSAQAKEYAYTIWTEP 118 Query: 119 -----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 ++ PL GR +D M +AA+ L G DF F++ S +RT+ Sbjct: 119 RYVLPQRRPLVWSVGR-------VDEHKMAVAARMLTGTFDFAAFQNTGTPVSHTVRTVY 171 Query: 174 HF--DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 H + + GN A FL +R+ +G L VG K + +++ L+ Q R+ Sbjct: 172 HLAPEPGAAGNESTWLFHADGFLKQMVRNIMGCLVAVGRNKISVDEVKILLEGQKREMAP 231 Query: 232 PLAPPEGLYFDSVEYS 247 APP+GL V+Y Sbjct: 232 ATAPPQGLCLRKVKYG 247 >gi|167770549|ref|ZP_02442602.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM 17241] gi|167667144|gb|EDS11274.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM 17241] Length = 246 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 14/247 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y G+ Y G+Q Q+N ++ +++ A+ + GE + + G RTD+GVHA F Sbjct: 6 LTIRYRGTRYHGYQVQQNAVTVAQTVQDAVERIFGERLPIKGCSRTDAGVHA----NCFA 61 Query: 66 LVREWVPVILC----KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII--TR 119 L V+ C +A+N +L SD I++ V + FH R+ + YLYRI T Sbjct: 62 LTLRTASVMACDAVVRAMNVHLP-SD-IAVTGCREVPEAFHPRYDCKGKRYLYRIYNGTV 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + W P LD M AAQ VG HDF F S +RT+ V Sbjct: 120 RDPFSADLALFWKYP--LDERRMDAAAQGFVGTHDFAAFCSSGSGVQDTVRTVTDASVTR 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + V FL+ +R VG+L G +T D+ L+ +DR GP APP GL Sbjct: 178 HGDFVIYSVTGNGFLYNMVRIMVGTLLEAARGVYTPADVLHMLEGRDRSAAGPTAPPHGL 237 Query: 240 YFDSVEY 246 Y D+V Y Sbjct: 238 YLDAVFY 244 >gi|189461835|ref|ZP_03010620.1| hypothetical protein BACCOP_02501 [Bacteroides coprocola DSM 17136] gi|189431429|gb|EDV00414.1| hypothetical protein BACCOP_02501 [Bacteroides coprocola DSM 17136] Length = 252 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 10/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA-IFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + + Y+G+ Y GWQ Q NG+S+Q ++ +A I + + + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLAYDGANYHGWQIQPNGNSVQETLTRALITFLRDDAIEVTGAGRTDAGVHARL 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHFD+ R ++ C ++ L + IS+ + V + H RF A R+Y Y I Sbjct: 61 MVAHFDIER----MLDCDSVTDKLNRLLPPDISVYQVRRVRQDAHTRFDATYRTYKYYIT 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 TR+ P + AW + +SLD + M AA+ L DFT+F +H + I H Sbjct: 117 TRKDP--FNRNYAWRVFQSLDFDKMNEAAKVLFEYTDFTSFSKLHTDVKTNNCRIMHARW 174 Query: 178 NSFGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + + A FL +R+ VG+L VG GK T K ++ ++R G P Sbjct: 175 EQIGEDEWVFTIQADRFLRNMVRAVVGTLVEVGRGKLTVEGFRKVIEEKNRCSAGTSVPG 234 Query: 237 EGLYFDSVEY 246 L+ + Y Sbjct: 235 HALFLVDIGY 244 >gi|226357340|ref|YP_002787080.1| tRNA-pseudouridine synthase I [Deinococcus deserti VCD115] gi|226319330|gb|ACO47326.1| putative tRNA-pseudouridine synthase I (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase) [Deinococcus deserti VCD115] Length = 266 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 118/247 (47%), Gaps = 6/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + ++G Y GWQ Q N S+Q ++ A + AGRTD+GVHA Sbjct: 19 RLRLTLAWDGGPYAGWQSQPNAPSVQDTLHAAFGRLGSGAFRPVAAGRTDAGVHAEAMPV 78 Query: 63 HFDLVREW-VPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H D+ + VP L +ALNA+L S +S+L FHARFS R Y+YR++ Sbjct: 79 HVDVPGGFRVPAPKLARALNAWLPPS--VSVLEAFDAPAGFHARFSCTERRYVYRLLVSS 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA +P +LD M AA +L G HDF F + + + +R + V Sbjct: 137 QRHPLWHGRALHLPGALDAGAMNAAATYLTGTHDFAAFATQEDRQT--VRELRVLRVVPE 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + E++V SFL +R VG+L L G GK + L + R + G P GLY Sbjct: 195 GPVWEVQVTGESFLRHMVRGLVGTLLLCGQGKLEPLAVRDVLAHRQRSQAGANVPAYGLY 254 Query: 241 FDSVEYS 247 F Y Sbjct: 255 FTGASYP 261 >gi|42779223|ref|NP_976470.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] gi|51316699|sp|Q73F64|TRUA1_BACC1 RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|42735138|gb|AAS39078.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] Length = 247 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 61 QVIHFDTPLSLEEWQ---WNNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 115 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ +R A + +G HDFT+F S +RTI + Sbjct: 116 LLSKTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 175 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 176 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 235 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 236 HGLYLWQVNYN 246 >gi|327438309|dbj|BAK14674.1| pseudouridylate synthase [Solibacillus silvestris StLB046] Length = 249 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 131/253 (51%), Gaps = 14/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+R I Y+G+G+ G+Q Q ++Q IEK + + G V + +GRTD+ VHA Sbjct: 1 MVRLKTTISYDGTGFAGYQVQPGERTVQLEIEKVLTTMQKGTQVKITASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF--SAIRRSYLYRII 117 QV HFD E P KALN +++ I +L++ V + FHAR+ S R Y++ Sbjct: 61 QVIHFDTALEIPPEKFQKALN--VQLPRDIRVLHMEQVKEDFHARYDVSGKRYRYIWDCS 118 Query: 118 TRQAPL----ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 T Q+P +E G + E MR AA+ +VG HDF+ F + + +RT++ Sbjct: 119 TVQSPFRRHYTVETGGV-----KPNVEAMREAAKAIVGTHDFSCFCAANTSVVDKVRTVE 173 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 ++ G + + + FL+ +R G+L VG G+ ++ LEK + + DR + G Sbjct: 174 TLELVWQGEELHMTISGNGFLYNMVRIIAGTLWEVGIGRREASSLEKTIASMDRAQAGKT 233 Query: 234 APPEGLYFDSVEY 246 AP GLY + V Y Sbjct: 234 APAHGLYLEQVFY 246 >gi|46199569|ref|YP_005236.1| tRNA pseudouridine synthase A [Thermus thermophilus HB27] gi|55981600|ref|YP_144897.1| tRNA pseudouridine synthase A [Thermus thermophilus HB8] gi|51316686|sp|Q72I65|TRUA_THET2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901217|sp|Q5SHU9|TRUA_THET8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46197195|gb|AAS81609.1| tRNA pseudouridine synthase A [Thermus thermophilus HB27] gi|55773013|dbj|BAD71454.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Thermus thermophilus HB8] Length = 253 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 127/251 (50%), Gaps = 8/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ G ++QG +E+A+ + G + AGRTD+GVHAL Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H D V +PV + +ALN L + + ++ V FHAR A+ R+Y YRI+ Sbjct: 60 MPFHVD-VESAIPVEKVPEALNRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILV 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R P L + RA + + LD E M A L+GRH+F F + V Sbjct: 117 RPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGERELLEARLQVA 176 Query: 179 SFGNLIEIRVVAR--SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +E+R+ R SFL Q+R VG+L VG GK L+ L+ DR+ GP AP Sbjct: 177 EGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPA 236 Query: 237 EGLYFDSVEYS 247 GLYF Y Sbjct: 237 HGLYFVEAAYP 247 >gi|229074203|ref|ZP_04207249.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18] gi|228708973|gb|EEL61100.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18] Length = 252 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIFEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|291459136|ref|ZP_06598526.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] gi|291418390|gb|EFE92109.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] Length = 252 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 126/250 (50%), Gaps = 9/250 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAI---FLVTGEI---VVVHGAGRTDSGVH 56 Y ++I Y+GS Y GW+RQ +IQG IE + L G++ V + GAGRTD+GVH Sbjct: 5 YKLLISYDGSRYLGWERQPGIDRTIQGKIEAVLSRMLLAEGKLQQPVDLIGAGRTDAGVH 64 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A A+ L + + LN YL D IS+ LSI K+FHAR+ AI + Y Y Sbjct: 65 ARGMCANVFLDSKRSEGEIRAYLNRYL--PDDISVDALSICGKRFHARYHAIGKLYRYSC 122 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + E+ ++P+ D E MR+AA+ L+G D+ +F S +R ID + Sbjct: 123 YFGEKKPVFERKYLLILPEMPDVERMRLAAEALIGEKDYRSFCGNPRMKKSTLRRIDRIE 182 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I FL QIR VG+L +G GK D+E+ L A+DR + G A Sbjct: 183 ILERKGCIRFYFHGNGFLQHQIRIMVGTLLEIGLGKREPGDMERILLAKDRSQAGYTAEA 242 Query: 237 EGLYFDSVEY 246 GL VEY Sbjct: 243 GGLCLMRVEY 252 >gi|163816114|ref|ZP_02207482.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759] gi|158448534|gb|EDP25529.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759] Length = 271 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 126/273 (46%), Gaps = 28/273 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGE------------------ 41 M Y Y+G+ Y GW+ + N +++G IE + +V G+ Sbjct: 1 MTNYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLSKMVDGDNGKTADVCRENMSADIRD 60 Query: 42 -----IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSI 96 V +HGAGRTD+GVHA VA L P + LN YL I L++++ Sbjct: 61 TKTPAKVDIHGAGRTDAGVHARAMVASGRLNTNRTPDEIKDYLNRYLPAD--ICALDVTV 118 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHD 154 +FHAR +A + Y Y + ++ W +P+ LD + M+ AA +LVG+HD Sbjct: 119 AGDRFHARLNATGKIYEYTLYVGLEKPVFDRNYVWCVPQGSVLDVDAMKKAASYLVGKHD 178 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F +F + S +RTI ++ G+ + +R FL +R G+L +G G Sbjct: 179 FRSFCGNNKMKKSTVRTIYDVEIVKEGDYVRMRFHGNGFLQNMVRILTGTLVEIGYGHMD 238 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + + + DR+ GP APP GL VEY Sbjct: 239 AEHMPEIIVGMDRQLAGPTAPPHGLCLLKVEYD 271 >gi|122919612|pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 gi|122919613|pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 127/251 (50%), Gaps = 8/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ G ++QG +E+A+ + G + AGRTD+GVHAL Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H D V +PV + +ALN L + + ++ V FHAR A+ R+Y YRI+ Sbjct: 60 MPFHVD-VESAIPVEKVPEALNRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILV 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R P L + RA + + LD E M A L+GRH+F F + V Sbjct: 117 RPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGERELLEARLQVA 176 Query: 179 SFGNLIEIRVVAR--SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +E+R+ R SFL Q+R VG+L VG GK L+ L+ DR+ GP AP Sbjct: 177 EGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPA 236 Query: 237 EGLYFDSVEYS 247 GLYF Y Sbjct: 237 HGLYFVEAAYP 247 >gi|228905939|ref|ZP_04069836.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 200] gi|228853754|gb|EEM98514.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 200] Length = 252 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPNSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|46445962|ref|YP_007327.1| putative tRNA pseudouridylate synthase I [Candidatus Protochlamydia amoebophila UWE25] gi|51316632|sp|Q6MEE7|TRUA1_PARUW RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|46399603|emb|CAF23052.1| putative tRNA pseudouridylate synthase I [Candidatus Protochlamydia amoebophila UWE25] Length = 256 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 133/249 (53%), Gaps = 8/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y+G+ Y GWQ Q N SSIQ I++A+ L+ E VV+ G+GRTD+GVHA QVA Sbjct: 4 YKLTIAYDGTNYSGWQIQPNASSIQQKIQEALCILLKKEKVVLVGSGRTDAGVHAKGQVA 63 Query: 63 HFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF ++++ + L +LN L I I + V +FH+++SAIR+ Y Y + + Sbjct: 64 HFHF-QDYIDLSRLHVSLNGLL--PRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKV 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIH--CQASSPIRTIDHFDVN 178 ++ +W + +D ++ AA G HDFT+F H A +P+RT+ D+ Sbjct: 121 MDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIK 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + FL+ +R+ VG+L V K ++ + A++R++ APPEG Sbjct: 181 PNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAAPPEG 240 Query: 239 LYFDSVEYS 247 L+ V Y Sbjct: 241 LFLIQVFYE 249 >gi|149370146|ref|ZP_01889997.1| tRNA pseudouridine synthase A [unidentified eubacterium SCB49] gi|149356637|gb|EDM45193.1| tRNA pseudouridine synthase A [unidentified eubacterium SCB49] Length = 259 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG+ Y GWQ+Q + ++Q IE + V + V GAGRTD+GVHA + Sbjct: 7 LRYFLEIAYNGAKYCGWQKQPDAKTVQQEIEYFLSTVLRQDVTTMGAGRTDTGVHARQMF 66 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD+ + +P L KA N++L IS+LN V HARF+AI R Y Y + + Sbjct: 67 LHFDVSKSISIPNFLYKA-NSFLP--PDISVLNYYEVLDDHHARFNAIAREYEYYVSVVK 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +++ A+ + D M AA L+ DF +F + + + + + Sbjct: 124 DPFSIDS--AYYLKNFPDINLMNEAASSLLTYSDFQSFSKVRTEVKTFNCNVTKAEWILN 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN++ + A FL +RS VG+L VG GK T D + +++R G P GLY Sbjct: 182 GNMLIFTISADRFLRNMVRSIVGTLLEVGSGKITIEDFHNIIASKNRSNAGISVPAHGLY 241 Query: 241 FDSVEY 246 V Y Sbjct: 242 LTKVIY 247 >gi|150008550|ref|YP_001303293.1| tRNA pseudouridine synthase A [Parabacteroides distasonis ATCC 8503] gi|255014350|ref|ZP_05286476.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_7] gi|166228743|sp|A6LDA7|TRUA_PARD8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149936974|gb|ABR43671.1| tRNA pseudouridine synthase A [Parabacteroides distasonis ATCC 8503] Length = 252 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 124/252 (49%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ V + GAGRTD+GVHA Sbjct: 1 MRRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLM 60 Query: 61 VAHFDLVREWVP-----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 +AHFD W V L + LN L I++ + V + HARF A R+Y Y Sbjct: 61 IAHFD----WEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYY 114 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + T++ P E + +P LD E M A + L DFT+F +H + I H Sbjct: 115 VTTKKDPFNHE--LVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHA 172 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P Sbjct: 173 GWTQEGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVP 232 Query: 236 PEGLYFDSVEYS 247 L+ V Y Sbjct: 233 GHALFLVDVTYP 244 >gi|218895277|ref|YP_002443688.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|218542262|gb|ACK94656.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] Length = 252 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R I Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTIAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|293977793|ref|YP_003543223.1| pseudouridylate synthase I [Candidatus Sulcia muelleri DMIN] gi|292667724|gb|ADE35359.1| pseudouridylate synthase I [Candidatus Sulcia muelleri DMIN] Length = 250 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 131/247 (53%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y+G+ ++GWQ QK S+Q +IE + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMF 60 Query: 62 AHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHF+ + + + LN++L ++ I I+N+ V K+ HARF+AI R Y YRI Sbjct: 61 AHFEFYEKKILLYRNFLFKLNSFLPLN--IKIINIFPVKKKIHARFTAISRVYEYRISLG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P +L WL + + + + A+ L D+++F C + I I + + Sbjct: 119 KNPFSL--SWQWLSKQKIKLKPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHI 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N++ + A +L +RS VG+L +G GK T D L A+DR AP +GL Sbjct: 177 KNNILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRNLALISAPAKGL 236 Query: 240 YFDSVEY 246 + + Y Sbjct: 237 FLTKINY 243 >gi|307719509|ref|YP_003875041.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM 6192] gi|306533234|gb|ADN02768.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM 6192] Length = 248 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++ Y+G+ + GWQRQ NG S+QG +E A+ + V VH AGRTDSGVHA+ Q +F Sbjct: 8 VVLAYDGTDFVGWQRQPNGRSVQGVVEDALARMHKHPVHVHAAGRTDSGVHAVGQCINFI 67 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +PV ALN++L + L V FHAR+SA+RR Y Y + +P Sbjct: 68 TDIDSLPVEKFALALNSFLP--RDVKALQAEEVPPDFHARYSAVRREYRYYVFPSPSPYP 125 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + + + D + A +VG HDF++F S + S +R I G+ + Sbjct: 126 HLRRYSLWVNRLPDVRLLNAYASCIVGEHDFSSFCSPSDPSPSKVRLIHTASWFPEGSQL 185 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+V +FL +R+ VG++ + K + K L+A+DR AP GL+ V Sbjct: 186 VFRIVGNAFLWRMVRALVGTMLDLEKQKADPEMMRKILEARDRSAASDSAPAWGLFLHEV 245 Query: 245 EY 246 +Y Sbjct: 246 QY 247 >gi|257790805|ref|YP_003181411.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243] gi|257474702|gb|ACV55022.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243] Length = 255 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 21/255 (8%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL QV FD Sbjct: 8 LTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHALGQVVSFD 67 Query: 66 -----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +P L ++LNA D I++ + F ARF A R Y Y + Sbjct: 68 VDDRDIAGRSLPS-LRRSLNAL--THDAITVREVEPKKLGFSARFDAQAREYHYHLCVDS 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K +W +P LD M AQ+L+G HDF +F C A+S H +V Sbjct: 125 TCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSF----CMAASAEGKPTHRNVREI 180 Query: 181 G---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ G Sbjct: 181 SFHPETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAG 240 Query: 232 PLAPPEGLYFDSVEY 246 AP +GL F V Y Sbjct: 241 ENAPAQGLVFWRVIY 255 >gi|116331308|ref|YP_801026.1| pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124997|gb|ABJ76268.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 265 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 15/249 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y +++EY+G + G+Q QK+ SIQ ++EKAI ++ E + + GAGRTD+GVHA V Sbjct: 1 MNYALLVEYDGLCFNGFQTQKDLPSIQENLEKAIKILLKEEISITGAGRTDTGVHARGMV 60 Query: 62 AHFDLVREWVPVILCKALNAYL----KISDT-ISILNLSIVDKQFHARFSAIRRSYLYRI 116 +F ++ + N +L I+D+ +SIL ++ V + F +RFS R Y Y I Sbjct: 61 VNFKTIKT------VQNFNKFLLSMNAITDSGLSILGMTEVGENFDSRFSCNSREYEYLI 114 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHF 175 + + P + K RA+ +D ++ + L G HDF + ++ + S IRTI Sbjct: 115 LNTKYPRPIWKNRAFWYQHKIDVPRLKTELELLKGEHDFRSLAKTASMKDRSTIRTILDA 174 Query: 176 DV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + + + L++I++ A FLH IR G+L + +GK ++ L ++DR G Sbjct: 175 KLERSSEWEGLLKIKIRANGFLHNMIRILTGTLLEIANGKLKVPNILDILSSKDRTIAGI 234 Query: 233 LAPPEGLYF 241 PP GLYF Sbjct: 235 TLPPYGLYF 243 >gi|317488484|ref|ZP_07947035.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA] gi|316912416|gb|EFV33974.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA] Length = 280 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 21/255 (8%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL QV FD Sbjct: 33 LTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHALGQVVSFD 92 Query: 66 -----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +P L ++LNA D I++ + F ARF A R Y Y + Sbjct: 93 VDDRDIAGRSLPS-LRRSLNAL--THDAITVREVEPKKLGFSARFDAQAREYHYHLCVDS 149 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K +W +P LD M AQ+L+G HDF +F C A+S H +V Sbjct: 150 TCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSF----CMAASAEGKPTHRNVREI 205 Query: 181 G---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ G Sbjct: 206 SFHPETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAG 265 Query: 232 PLAPPEGLYFDSVEY 246 AP +GL F V Y Sbjct: 266 ENAPAQGLVFWRVIY 280 >gi|325832022|ref|ZP_08165119.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1] gi|325486343|gb|EGC88795.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1] Length = 284 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 21/255 (8%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL QV FD Sbjct: 37 LTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHALGQVVSFD 96 Query: 66 -----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +P L ++LNA D I++ + F ARF A R Y Y + Sbjct: 97 VDDRDIAGRSLPS-LRRSLNAL--THDAITVREVEPKKLGFSARFDAQAREYHYHLCVDS 153 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K +W +P LD M AQ+L+G HDF +F C A+S H +V Sbjct: 154 TCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSF----CMAASAEGKPTHRNVREI 209 Query: 181 G---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ G Sbjct: 210 SFHPETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAG 269 Query: 232 PLAPPEGLYFDSVEY 246 AP +GL F V Y Sbjct: 270 ENAPAQGLVFWRVIY 284 >gi|229015543|ref|ZP_04172540.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273] gi|229021754|ref|ZP_04178334.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272] gi|228739541|gb|EEL89957.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272] gi|228745766|gb|EEL95771.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273] Length = 252 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLAEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|163938150|ref|YP_001643034.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] gi|163860347|gb|ABY41406.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] Length = 252 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 126/251 (50%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q + ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPHHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN+ L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNSML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|319952056|ref|YP_004163323.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237] gi|319420716|gb|ADV47825.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237] Length = 250 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 129/247 (52%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G Y GWQ+Q N ++QG +E A+ + +++ GAGRTD+GVHA Sbjct: 1 MRYFIRFSYFGKHYHGWQKQPNAVTVQGVLEDALSKLLANEIILMGAGRTDAGVHAKELY 60 Query: 62 AHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD E +P LNA+L I+IL++ V + HARF+A+ R+Y Y I+ + Sbjct: 61 AHFDF--EEIPNKENFVFRLNAFL--PKDIAILDVFQVPEDAHARFNAVARTYEYWIVQQ 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A LI LD M AAQ + DF F + ++ + + + Sbjct: 117 KNPFL--TNHAHLIKYPLDINKMNEAAQVFLSHIDFECFSKSNTAVNTFNCDVKYAEWKV 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL +R+ VG+L VG GK ++++ L+++DR + G AP +GL Sbjct: 175 TDGILVFTITADRFLRNMVRAIVGTLLEVGLGKIDISNVKAILKSKDRSKAGASAPAKGL 234 Query: 240 YFDSVEY 246 Y SV Y Sbjct: 235 YLTSVLY 241 >gi|317126894|ref|YP_004093176.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522] gi|315471842|gb|ADU28445.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522] Length = 260 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R I+ Y+G+ Y G+Q Q + +IQ +EKA+ + + V +GRTD+GVH+L Sbjct: 1 MKRVKGIVTYDGTKYSGYQVQVDKKTIQAELEKALAKIHKADSWNVVSSGRTDTGVHSLG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD +A N L D I + +L V FHARF ++ + Y+Y++ T Sbjct: 61 QTIHFDTSLSIPEERWPQAFNRLL--PDDIQVRDLQYVHHDFHARFDSVGKKYVYKVNTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + P L E M AA HL G HDFT+F S +RTI ++ Sbjct: 119 REKDIFKRNFVYHHPYVLSYEKMLEAAMHLEGTHDFTSFSSPRTDVIDKVRTIYAIELEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + FL+ +R G+L VG GK ++ + + +DR GP P GL Sbjct: 179 NGDEWTFTYIGNGFLYQMVRVLTGTLLHVGKGKIRPEEIPEIFEGKDRSLAGPSIPGTGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLTNVYYD 246 >gi|262383400|ref|ZP_06076536.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_33B] gi|262294298|gb|EEY82230.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_33B] Length = 265 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 122/250 (48%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA +A Sbjct: 16 RYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALATLMRKPVPIVGAGRTDAGVHARLMIA 75 Query: 63 HFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD W I L + LN L I++ + V + HARF A R+Y Y I Sbjct: 76 HFD----WEGPIEDLAFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYIT 129 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 TR+ P E + P LD E M A + L DFT+F +H + I H Sbjct: 130 TRKDPFNYE--LVYKFPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGW 187 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P Sbjct: 188 TQEGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGH 247 Query: 238 GLYFDSVEYS 247 L+ V Y Sbjct: 248 ALFLVDVTYP 257 >gi|326790769|ref|YP_004308590.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326541533|gb|ADZ83392.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 246 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 122/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y + I Y+GS Y G+Q+Q +IQG +E + E + + +GRTD+GVH+ Sbjct: 1 MTNYKLTIAYDGSKYNGFQKQSKHPEKTIQGRLENVLTQCFEEDIQIIASGRTDAGVHSK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F P + L+ YL I+IL LSI +FHAR++ +R+ Y Y I Sbjct: 61 GQVCNFHAEHYLEPTTVLNYLSNYL--PQDIAILELSIASPRFHARYNVLRKCYTYTIDN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A+ + LD M+ AA +L+G HDF F S+ + S R + + D+ Sbjct: 119 GLFANPFTLKYAYHLASPLDISRMQAAANYLLGTHDFKAFTSLKSKTKSTTRHLFNIDIT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G++I++ FL +R G+L VG G+ + ++ L Q R E G AP G Sbjct: 179 QEGSMIKLTYEGNGFLQHMVRILTGTLIEVGLGERSPEEMLVLLNNQIRSEAGFTAPAHG 238 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 239 LCMQRVDY 246 >gi|21911175|ref|NP_665443.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS315] gi|28895139|ref|NP_801489.1| tRNA pseudouridine synthase A [Streptococcus pyogenes SSI-1] gi|25453306|sp|Q8K5W2|TRUA_STRP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21905386|gb|AAM80246.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS315] gi|28810384|dbj|BAC63322.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes SSI-1] Length = 249 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ L G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIEKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + P +L+ + M+ A LVG HDFT F + + +RTI V Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQDAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEICYE 248 >gi|203283942|ref|YP_002221682.1| pseudouridylate synthase I [Borrelia duttonii Ly] gi|203287485|ref|YP_002222500.1| pseudouridylate synthase I [Borrelia recurrentis A1] gi|238690561|sp|B5RLM0|TRUA_BORDL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690579|sp|B5RQJ5|TRUA_BORRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|201083385|gb|ACH92976.1| pseudouridylate synthase I [Borrelia duttonii Ly] gi|201084705|gb|ACH94279.1| pseudouridylate synthase I [Borrelia recurrentis A1] Length = 245 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 120/240 (50%), Gaps = 2/240 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q +IQG IEKA+ + V + AGRTD GVHA RQ+ F + Sbjct: 8 IAYDGSLYHGFQIQPTKPTIQGEIEKALEKINKTKVKIQSAGRTDKGVHAKRQIISFYIK 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L A+N+ LK + I I+ L V +F RF A +R Y Y I+ + E+ Sbjct: 68 ININLKNLKTAINSLLK--NDIRIIKLKYVSNEFQPRFHAKKRKYTYYILNNENHYPWEE 125 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A+ + K L+ + A+ L+G HDFTTF I Q +S ++ I I Sbjct: 126 YQAYYVRKKLNINRLNTMAEMLIGLHDFTTFSCIRDQTNSKLKEIYLAKFKKKNKFIVFE 185 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ SFL +RS VG++ + + K L++++RK AP + L+ D V Y Sbjct: 186 IIGSSFLWKMVRSIVGTMIDIEIKNESVDTFIKILKSKNRKYARTTAPAKALFLDRVFYE 245 >gi|293369414|ref|ZP_06615999.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CMC 3f] gi|292635581|gb|EFF54088.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CMC 3f] Length = 267 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V HARF A R+Y Y + T + Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLLPPD--ISIYRVCRVRPDTHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|15675714|ref|NP_269888.1| tRNA pseudouridine synthase A [Streptococcus pyogenes M1 GAS] gi|19746822|ref|NP_607958.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS8232] gi|50914971|ref|YP_060943.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10394] gi|71904268|ref|YP_281071.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS6180] gi|71911430|ref|YP_282980.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS5005] gi|94989250|ref|YP_597351.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS9429] gi|94991194|ref|YP_599294.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10270] gi|94993138|ref|YP_601237.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS2096] gi|94995068|ref|YP_603166.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10750] gi|139473113|ref|YP_001127828.1| tRNA pseudouridine synthase A [Streptococcus pyogenes str. Manfredo] gi|209560051|ref|YP_002286523.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NZ131] gi|54039783|sp|P65851|TRUA_STRP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042088|sp|P65850|TRUA_STRP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901238|sp|Q5XA03|TRUA_STRP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122986813|sp|Q1J4W4|TRUA_STRPF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122986985|sp|Q1JF09|TRUA_STRPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123257716|sp|Q1J9W8|TRUA_STRPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123258127|sp|Q1JK16|TRUA_STRPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123775214|sp|Q48RE4|TRUA_STRPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166229842|sp|A2RCK6|TRUA_STRPG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057736|sp|B5XIG6|TRUA_STRPZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13622931|gb|AAK34609.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes M1 GAS] gi|19749059|gb|AAL98457.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS8232] gi|50904045|gb|AAT87760.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10394] gi|71803363|gb|AAX72716.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS6180] gi|71854212|gb|AAZ52235.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS5005] gi|94542758|gb|ABF32807.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS9429] gi|94544702|gb|ABF34750.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10270] gi|94546646|gb|ABF36693.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS2096] gi|94548576|gb|ABF38622.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10750] gi|134271359|emb|CAM29579.1| tRNA pseudouridine synthase A [Streptococcus pyogenes str. Manfredo] gi|209541252|gb|ACI61828.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NZ131] Length = 249 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ L G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIEKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + P +L+ + M+ A LVG HDFT F + + +RTI V Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQEAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEICYE 248 >gi|237711190|ref|ZP_04541671.1| tRNA pseudouridine synthase A [Bacteroides sp. 9_1_42FAA] gi|237727555|ref|ZP_04558036.1| tRNA pseudouridine synthase A [Bacteroides sp. D4] gi|229434411|gb|EEO44488.1| tRNA pseudouridine synthase A [Bacteroides dorei 5_1_36/D4] gi|229455034|gb|EEO60755.1| tRNA pseudouridine synthase A [Bacteroides sp. 9_1_42FAA] Length = 267 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A + + V GAGRTD+GVHA V Sbjct: 11 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRAFSTFLRQEIEVVGAGRTDAGVHARLMV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E V + + LN L SD I++ ++ V HARF A R+Y Y + R+ Sbjct: 71 AHFDYDQELDCVQITEKLNRLLP-SD-IAVYDVKRVKDDAHARFDATYRTYKYYVTIRKD 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 P + AW + SLD E M AA+ L DFT+F +H + I + + Sbjct: 129 P--FNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMYAEWTRVS 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T K ++ +DR G P L+ Sbjct: 187 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTLDGFRKVIENKDRCSAGSSVPGHALF 246 Query: 241 FDSVEY 246 V Y Sbjct: 247 LVDVGY 252 >gi|17231681|ref|NP_488229.1| tRNA pseudouridine synthase A [Nostoc sp. PCC 7120] gi|42559852|sp|Q8YPK5|TRUA_ANASP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17133324|dbj|BAB75888.1| tRNA-pseudouridine synthase I [Nostoc sp. PCC 7120] Length = 282 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 121/250 (48%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++++Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QVA Sbjct: 12 RVALVVQYLGTHFHGWQRQKQHRTVQEEIETAIAKILGHHVTLHGAGRTDSGVHAAAQVA 71 Query: 63 HFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD +W VI N+YL I I + V ++HARFSA R Y Y I Sbjct: 72 HFDATGLIPAHKWASVI-----NSYL--PKDILIKASAAVGDRWHARFSAAYRRYRYTIY 124 Query: 118 TRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 T P +W LD M+ A + L+G+H F + S + + Sbjct: 125 TEDRPNLFVTPFSWHYYYAPLDESLMQAALKPLMGKHHLAAFHRAGSKRSHSWVEVQAVE 184 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G I I + A FL+ +R VG L VG G+ T + + + Q R+E AP Sbjct: 185 CHRSGPFIHIEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPS 244 Query: 237 EGLYFDSVEY 246 +GL V Y Sbjct: 245 QGLCLLRVGY 254 >gi|295425622|ref|ZP_06818309.1| tRNA pseudouridine synthase A [Lactobacillus amylolyticus DSM 11664] gi|295064638|gb|EFG55559.1| tRNA pseudouridine synthase A [Lactobacillus amylolyticus DSM 11664] Length = 262 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY M++ Y+G + G+Q Q N ++QG++E+A+ +T G+ V+V G+GRTD+GVHA+ QV Sbjct: 4 RYKMLMAYDGHLFHGFQVQPNQRTVQGTVEEALKKMTKGKRVIVEGSGRTDAGVHAMGQV 63 Query: 62 AHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 FD +P + ALN+ + + I I FH R+S + Y YR+ Sbjct: 64 IQFDYPGNRIPAEKMILALNSMMPMD--IIFKECEIASPDFHVRYSIKGKWYRYRMSLDH 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P +D M+ AA+ L+G+HDFT+F + Q + +RT+ + +V N Sbjct: 122 FVNPFKRFYTGHYPYPIDVSKMKEAAKDLLGKHDFTSFAASGGQIKNKVRTMYYVNVEKN 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + FL+ +R V +L +G GK D + ++A+DR + AP G Sbjct: 182 ESQNELVFDFICSGFLYNMVRILVATLLEIGSGKRPVHDFPRIIKAKDRLQVTQTAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLYHVFYD 250 >gi|306826655|ref|ZP_07459958.1| tRNA pseudouridine synthase A [Streptococcus pyogenes ATCC 10782] gi|304431103|gb|EFM34109.1| tRNA pseudouridine synthase A [Streptococcus pyogenes ATCC 10782] Length = 249 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ L G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIKKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + P +L+ + M+ A LVG HDFT F + + +RTI V Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQEAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEICYE 248 >gi|313897268|ref|ZP_07830812.1| tRNA pseudouridine synthase A [Clostridium sp. HGF2] gi|312957989|gb|EFR39613.1| tRNA pseudouridine synthase A [Clostridium sp. HGF2] Length = 252 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 125/252 (49%), Gaps = 12/252 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQRQ N SIQ IE A+ + G + + +GRTD+ VHAL Q Sbjct: 1 MPRYKVTLSYDGTAYGGWQRQTNTHSIQQEIEAAMEKIEGNFIRITASGRTDAHVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 V HFD ++ P +ALN+ L I I ++ +V+ FHARF A+ + Y Y I T Sbjct: 61 VFHFDSAKDLAPENWRRALNSLL--PHDIRIQDVCLVEDDFHARFHAVSKRYDYLITTDV 118 Query: 120 QAPL---ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHF 175 P + K R K LD + M A+ +G HDFT+F S S ++TI Sbjct: 119 NNPFYYHYMGKDR-----KVLDVKRMSECARVFLGTHDFTSFTSSKLDPRKSKVKTITRL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D+ + + + FL +R +L G + D+++ L QD+ C A Sbjct: 174 DIVQEEHAVRLVFEGNGFLRYMVRMIAQTLIEAGKHRLDVADVKQMLYGQDKHLCRYKAQ 233 Query: 236 PEGLYFDSVEYS 247 EGLY V Y+ Sbjct: 234 AEGLYLVHVTYA 245 >gi|212694471|ref|ZP_03302599.1| hypothetical protein BACDOR_03999 [Bacteroides dorei DSM 17855] gi|265750782|ref|ZP_06086845.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_33FAA] gi|212662972|gb|EEB23546.1| hypothetical protein BACDOR_03999 [Bacteroides dorei DSM 17855] gi|263237678|gb|EEZ23128.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_33FAA] Length = 257 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A + + V GAGRTD+GVHA V Sbjct: 1 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRAFSTFLRQEIEVVGAGRTDAGVHARLMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E V + + LN L SD I++ ++ V HARF A R+Y Y + R+ Sbjct: 61 AHFDYDQELDCVQITEKLNRLLP-SD-IAVYDVKRVKDDAHARFDATYRTYKYYVTIRKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 P + AW + SLD E M AA+ L DFT+F +H + I + + Sbjct: 119 P--FNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMYAEWTRVS 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T K ++ +DR G P L+ Sbjct: 177 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTLDGFRKVIENKDRCSAGSSVPGHALF 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LVDVGY 242 >gi|83591242|ref|YP_431251.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073] gi|123766692|sp|Q2RFT1|TRUA_MOOTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83574156|gb|ABC20708.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073] Length = 246 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 125/248 (50%), Gaps = 14/248 (5%) Query: 6 MIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y+GS Y GWQ Q +G ++QG + A+ +TGE + AGRTD+GVHA QV Sbjct: 6 ITLAYDGSNYAGWQVQPEAHGPTVQGEVAAALKRLTGEEITPVAAGRTDAGVHARGQVIS 65 Query: 64 FDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F R +PV ALN+ L I+ L V FHAR+ A R+ Y Y I + P Sbjct: 66 FS-TRARIPVERWPLALNSVLPAD--IAALEAVEVAPDFHARYCAKRKWYRYTIYNNRVP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR----TIDHFDVN 178 + +W + + LD M AA +L G HDF +F C A SP+R + V+ Sbjct: 123 DVFCRRYSWHLRQPLDVIAMARAAAYLQGCHDFRSF----CAAGSPVRHFERQVQQASVS 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I V+A FL+ +R VG+L +G + + L A+ R++ GP AP G Sbjct: 179 QNGPFIYFDVIADGFLYHMVRIMVGTLVEIGRRRLVPEAIPAILAARSREKAGPTAPARG 238 Query: 239 LYFDSVEY 246 L + VEY Sbjct: 239 LCLERVEY 246 >gi|326522897|dbj|BAJ88494.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 328 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 130/254 (51%), Gaps = 13/254 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVHAL 58 ++ M+I Y+G+ + GWQ Q + +IQ +EKA+ +T E+ +V GAGRTD+GVHA Sbjct: 48 KWRMVIAYDGTKFKGWQYQPSPPTIQCFLEKALMRITKLDRKELCLV-GAGRTDTGVHAR 106 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + + A+N L I + +S +FHAR S + Y Y+I Sbjct: 107 GQVAHFTTPFAYHCLDSFHSAINGLL--PPDIRVREISAACGEFHARTSTKSKIYHYKIY 164 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHC-QASSPIRTIDHF 175 A+ L+ M+ AA H VG HDFT+F ++H + SPI+ I F Sbjct: 165 NEAVMDPFHTNYAYHSAHKLNPHAMQEAANHFVGVHDFTSFANAVHNDRVRSPIKKISRF 224 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL-- 233 DV +I++ V FL+ Q+R+ V L VG + K + A+DRKE + Sbjct: 225 DVTKMDAIIQLEVEGTGFLYRQVRNMVALLIQVGREGLPPEIVPKIIAAKDRKELAKVAL 284 Query: 234 -APPEGLYFDSVEY 246 APP GLY SV Y Sbjct: 285 SAPPHGLYLMSVNY 298 >gi|229009651|ref|ZP_04166877.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048] gi|229131150|ref|ZP_04260062.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196] gi|229165130|ref|ZP_04292925.1| tRNA pseudouridine synthase A [Bacillus cereus AH621] gi|228618393|gb|EEK75423.1| tRNA pseudouridine synthase A [Bacillus cereus AH621] gi|228652363|gb|EEL08288.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196] gi|228751673|gb|EEM01473.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048] Length = 252 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|317495541|ref|ZP_07953909.1| tRNA pseudouridine synthase A [Gemella moribillum M424] gi|316914355|gb|EFV35833.1| tRNA pseudouridine synthase A [Gemella moribillum M424] Length = 265 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GSGY G+Q Q N +++Q IEKA+ + + + V+ +GRTDSGVHA QV Sbjct: 1 MRVVLLCRYDGSGYHGFQIQPNNNTVQEEIEKALKKINKKDIRVYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KALNA L I I ++ ++ FH R+++ R++Y Y++ Q Sbjct: 61 LHFDTELNIPNEAWKKALNANLPAD--IRIFGVTTSNEDFHVRYNSTRKTYHYKLYIGQN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---N 178 + + E + A + +G HDF++F S + IR I +F++ Sbjct: 119 VDPFLLNYVGQHKYNFNFEKAQKALNYFIGEHDFSSFCSKNSSVEDKIREIYYFNMYYDK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I V FL+ +R +G+++ V GK+ + +++ L ++RK GP A G Sbjct: 179 TNPRVINFDVCGNGFLYNMVRIIIGTIQDVAAGKYGAEYVKEILDKKERKYAGPKADAAG 238 Query: 239 LYFDSVEYS 247 LY V Y+ Sbjct: 239 LYLKEVIYN 247 >gi|210617714|ref|ZP_03291708.1| hypothetical protein CLONEX_03932 [Clostridium nexile DSM 1787] gi|210149156|gb|EEA80165.1| hypothetical protein CLONEX_03932 [Clostridium nexile DSM 1787] Length = 249 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y MII Y+GS Y GWQRQ +IQ +E+ + + G V + G+GRTD+GVHA Sbjct: 1 MRNYKMIIVYDGSRYKGWQRQNLTNLTIQTILERTVEQIVGYPVEIDGSGRTDAGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+ V + LN L + I + + +V FH+R+SA + Y Y I TR Sbjct: 61 QVANMK-VSGLLDESFVGELNCLL--PEDICVKEMELVPGSFHSRYSAKAKKYKYCIDTR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + K L ++M+ AA++L G HDF+ F + + S +RTI + Sbjct: 118 KKPCVFTRRYTYHFTKELHLDDMKKAAEYLKGTHDFSAF-TDNKDEKSKVRTIYEIKIVK 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +E FL+ +R G+L VG + + D++ AL+ ++R+ G LAP GL Sbjct: 177 KWTRLEFEFYGTGFLYHMVRILTGTLLEVGCAEKSIEDIKMALEQKERELTGFLAPARGL 236 Query: 240 YFDSVEY 246 + + V Y Sbjct: 237 FLEKVYY 243 >gi|325288607|ref|YP_004264788.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM 8271] gi|324964008|gb|ADY54787.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM 8271] Length = 267 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M C+ + Y+G+ Y G+Q Q ++G +IQG +EKA + E + + AGRTD GVHA Sbjct: 1 MNNICLRLAYDGTQYHGFQSQPEEHGKTIQGELEKAWKRLAQEEIKIVTAGRTDKGVHAA 60 Query: 59 RQVAHFD----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV +F + ++ +P+ A+N+ L + I IL +V +F+AR SA + Y Y Sbjct: 61 GQVINFKSAARIPQDKIPI----AMNSVL--PEEIRILEAKLVGAEFNARTSAYWKRYDY 114 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +I ++ + + P LD MR AA + G+HDF TF + A S +RT+ H Sbjct: 115 KIENKRTADVFTRLYSLHEPVPLDLNKMRQAAARIEGKHDFKTFSAAGSNAKSFVRTVYH 174 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V S I + + FL+ +R G+L VG GK D+ L++++R G Sbjct: 175 CKVQSSSGYITVTCIGNGFLYNMVRIITGTLLYVGKGKIVPEDMPGILKSRNRALAGKTV 234 Query: 235 PPEGLYFDSVEY 246 P GL ++Y Sbjct: 235 SPAGLVLRYIDY 246 >gi|260438183|ref|ZP_05791999.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] gi|292809373|gb|EFF68578.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] Length = 250 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+GY GWQ+Q N +++ + KA + + + + GA RTD+GVH+ V Sbjct: 1 MRVMLRVAYDGTGYSGWQKQPNAITVEEVLCKACKNLFAQDIDIIGASRTDAGVHSYGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD+ + ALN+ ++ + I ++ V + FH R R++Y Y+I + Sbjct: 61 AVFDVDTRIPAEKISYALNS--RLPEDIRVVESRQVSENFHPRHVECRKTYEYKIWNDKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + + +LD M A ++ +G HDFT+F S+ Q S IR I V Sbjct: 119 ENPLVRYYSHFFYGNLDIGKMNEACRYFIGLHDFTSFCSVGSQVQSKIREIYSISVEKNN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI IRV FL+ +R G+L VG G+ ++ K + ++R+ GP AP GL Sbjct: 179 RLITIRVTGNGFLYNMVRIIAGTLIKVGQGQLEPAEIPKIIDGKNRELAGPTAPARGLAL 238 Query: 242 DSVEYS 247 + Y Sbjct: 239 VEINYE 244 >gi|228898895|ref|ZP_04063177.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222] gi|228963242|ref|ZP_04124411.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto str. T04001] gi|228796500|gb|EEM43939.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto str. T04001] gi|228860795|gb|EEN05173.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222] Length = 252 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWEVNYN 251 >gi|116328579|ref|YP_798299.1| pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121323|gb|ABJ79366.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 265 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 15/249 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y +++EY+G + G+Q QK+ SIQ ++EKA+ ++ E + + GAGRTD+GVHA V Sbjct: 1 MNYALLVEYDGLCFNGFQTQKDLPSIQENLEKAVKILLKEEISITGAGRTDTGVHARGMV 60 Query: 62 AHFDLVREWVPVILCKALNAYL----KISDT-ISILNLSIVDKQFHARFSAIRRSYLYRI 116 +F ++ + N +L I+D+ +SIL ++ V + F +RFS R Y Y I Sbjct: 61 VNFKTIKT------VQNFNKFLLSMNAITDSGLSILGMTEVGENFDSRFSCNSREYEYLI 114 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHF 175 + + P + K RA+ +D ++ + L G HDF + ++ + S IRTI Sbjct: 115 LNTKYPRPIWKNRAFWYQHKIDVPRLKTELELLKGEHDFRSLAKTASMKDRSTIRTILDA 174 Query: 176 DV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + + + L++I++ A FLH IR G+L + +GK ++ L ++DR G Sbjct: 175 KLERSSEWEGLLKIKIRANGFLHNMIRILTGTLLEIANGKLKVPNILDILSSKDRTIAGI 234 Query: 233 LAPPEGLYF 241 PP GLYF Sbjct: 235 TLPPYGLYF 243 >gi|300088167|ref|YP_003758689.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527900|gb|ADJ26368.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 261 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+G+ Y G Q Q +G+++Q +E A+ +TGE + +H A RTD+GV A QVA Sbjct: 8 KLVLTIEYDGAQYRGSQAQGHGATVQSELETAVARLTGEKIRIHLASRTDAGVSAAEQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + ALN +L I++ + V F R A+ R Y YRI+ + P Sbjct: 68 SFRTSLRLPGRTVADALNHFLPAD--IAVKKVFRVPDTFDVRRHAVSREYRYRILNTRIP 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFG 181 L + ++ + LD + A LVG HD F S + + + IR I + S G Sbjct: 126 SPLRERHSYRVYGELDIAAIEQAVGKLVGEHDLAAFASKLGRRPGTTIRRILAAGLTSEG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + R+VA+SFL +R+ VG L +G G+ T + EK L A GP AP +GL Sbjct: 186 EELVFRIVAKSFLPHMVRNIVGVLVKIGTGRLTVAEFEKLLSAAVPGSAGPAAPGKGLCL 245 Query: 242 DSVEYS 247 V Y+ Sbjct: 246 IKVNYA 251 >gi|187917895|ref|YP_001883458.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH] gi|238689303|sp|B2S1K1|TRUA_BORHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119860743|gb|AAX16538.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH] Length = 245 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 121/240 (50%), Gaps = 2/240 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y+G+Q Q +IQG IEKA+ ++ V VH AGRTD GVHA Q+ F + Sbjct: 8 IAYDGSLYYGFQIQPTKPTIQGEIEKALEKISKTKVKVHSAGRTDKGVHARGQIISFYIR 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L A+N+ L+ I I+ L V +F RF+A RR Y Y I+ + E Sbjct: 68 INIKLKNLKTAINSLLR--KDIRIIKLKYVADEFQPRFNAKRRKYSYYILNNENHYPWEG 125 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A+ + K L+ + A+ L+G HDFTTF I Q +S ++ I LI Sbjct: 126 YQAYYVKKKLNINRLNEMAKMLIGIHDFTTFSCIKDQTNSKLKKIYFARFKKKNKLIIFE 185 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ SFL +RS VG++ + +K L +++RK AP + L+ D V Y Sbjct: 186 IIGSSFLWKMVRSIVGTIIDIEIKNEPVYTFKKILNSKNRKFTRTTAPAKALFLDKVFYE 245 >gi|75764616|ref|ZP_00744060.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487896|gb|EAO51668.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 264 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 18 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 77 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 78 QVIHFDTPLSLEEWQ---WNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRV 132 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 133 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 192 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 193 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPG 252 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 253 HGLYLWEVNYN 263 >gi|213418519|ref|ZP_03351585.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 239 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI 85 S+Q +EKA+ V E + V AGRTD+GVH QV HF+ +NA L Sbjct: 3 SVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL-- 60 Query: 86 SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRI 144 I++ + V FHARFSA R Y Y I R P L KG + LD E M Sbjct: 61 PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYY-EPLDAERMHR 119 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + + A +F+H +R+ VGS Sbjct: 120 AAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGS 179 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L VG + + + L A+DR A EGLY +V+Y Sbjct: 180 LLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDY 221 >gi|317123065|ref|YP_004103068.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM 12885] gi|315593045|gb|ADU52341.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM 12885] Length = 298 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 2/241 (0%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 ++ Y+G+ + GWQRQ ++Q +E A+ + G V V AGRTD+GVHA QV H+ Sbjct: 49 VLAYDGTDFAGWQRQPRQRTVQQVVEDALERLLGHPVRVTAAGRTDAGVHARAQVIHWRT 108 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 R + L AL L +D +++ FHAR+SA R++Y Y + P L Sbjct: 109 PRPFPVDRLVPALRGLLP-ADVVAV-EAGEAPPGFHARYSARRKTYAYHVWRDPVPDPLH 166 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + W +P LD + M AA+ L G HDF F++ RT+ V G L+ Sbjct: 167 RRWQWHLPLDLDVDAMVEAARRLEGTHDFAPFKAAGSPVRRTRRTLYRCAVEERGPLLRF 226 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL R VG+L +G G+W + +E L R GP AP GL V Y Sbjct: 227 VLEADGFLMHMARGIVGTLVEIGRGRWQADRVEAILAEGRRDLAGPTAPAHGLVLWQVVY 286 Query: 247 S 247 Sbjct: 287 D 287 >gi|160914527|ref|ZP_02076742.1| hypothetical protein EUBDOL_00533 [Eubacterium dolichum DSM 3991] gi|158433685|gb|EDP11974.1| hypothetical protein EUBDOL_00533 [Eubacterium dolichum DSM 3991] Length = 252 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 121/251 (48%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ+Q N SIQ IE A+ + E V + +GRTD+ VHAL Q Sbjct: 1 MDRYKVTVCYDGTNYAGWQKQDNARSIQEEIECALAKINEEAVEIVASGRTDAHVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +A N+ L I IL + V FHARF A+R+ Y Y I Sbjct: 61 VFHFDAKKALSDEQWVRACNSLL--PKDIRILKVEKVSDSFHARFDAVRKRYDYYITNDV 118 Query: 121 APLALE----KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHF 175 LE K R KSLD M+ A +G HDFT+F S + S I+TI Sbjct: 119 LNPFLENYMGKDR-----KSLDVAYMQECANVFIGTHDFTSFTSSKIDERKSRIKTIYRL 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +V N + I +FL +R L G + T + + L+A+D+ C A Sbjct: 174 EVQQEANAVHIIFEGNAFLRYMVRMLAQVLIEAGKHRLTKEAISQMLEAKDKHACRYKAS 233 Query: 236 PEGLYFDSVEY 246 GLY V+Y Sbjct: 234 ANGLYLVRVDY 244 >gi|212637986|ref|YP_002314506.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1] gi|226708641|sp|B7GJ99|TRUA_ANOFW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212559466|gb|ACJ32521.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1] Length = 246 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 129/248 (52%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R I Y+G+ + G+Q Q+ ++QG +E+A+ ++ G+ V V+ +GRTD+ VHA Sbjct: 1 MRRIKCTIAYDGTNFAGYQIQQQKRTVQGELERALSIIHKGQFVRVYASGRTDATVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD KALNA L D + + S V FHARFS ++ Y YR+ Sbjct: 61 QVIHFDTPLTIPDERWPKALNALL--PDDVIVKEASEVPSSFHARFSVKKKEYRYRVWIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + L + + P + M A ++L+G HDFT+F S + +RTI +V Sbjct: 119 EKNVFL-RHYVYHHPYDVSVPAMNEALRYLIGTHDFTSFCSAKTEVDDKVRTIYEAEVVQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + R+V FL+ +R VG++ VG G+ + +++ L+ ++R G AP GL Sbjct: 178 EGEELIFRLVGNGFLYNMVRIIVGTVLEVGRGERCAEEIKTILEQKNRSVAGKTAPGHGL 237 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 238 YLWHVSYD 245 >gi|298376183|ref|ZP_06986139.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_19] gi|298267220|gb|EFI08877.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_19] Length = 265 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 123/250 (49%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ V + GAGRTD+GVHA +A Sbjct: 16 RYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLMIA 75 Query: 63 HFDLVREWVP-----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD W V L + LN L I++ + V + HARF A R+Y Y + Sbjct: 76 HFD----WEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYVT 129 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T++ P E + +P LD E M A + L DFT+F +H + I H Sbjct: 130 TKKDPFNHE--LVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGW 187 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P Sbjct: 188 TQEGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGH 247 Query: 238 GLYFDSVEYS 247 L+ V Y Sbjct: 248 ALFLVDVTYP 257 >gi|262341374|ref|YP_003284229.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272711|gb|ACY40619.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 247 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 134/246 (54%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG ++GWQ QK S+++G++E + + E + V GAGRTD GVHA + Sbjct: 1 MRFFIELAYNGKYFYGWQVQKKVSTVEGNLEYCLSKLLKESINVIGAGRTDKGVHAKQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + L K LN +L +I +LN+ V + HARF+AI+R Y Y ++ + Sbjct: 61 AHFDY-KGKISNNLIKKLNVFL--PKSIKVLNIFPVKENIHARFNAIKRIYKYYLVRDKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSF 180 P + +W L+ + M IA++ L+G DF++F + + + I ++H + Sbjct: 118 PFY--QDFSWHCFYPLNIQRMNIASKKLMGHKDFSSFCKKKTFETRNNICKVNHVCWSVN 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+ + A FL + +RS +G+L VG K + + + +++++ C + P GL+ Sbjct: 176 NNVFCFTIEANRFLRSMVRSIIGTLIDVGRNKISVNEFSEIIESKNSNFCKSIVPACGLF 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LTRILY 241 >gi|315186691|gb|EFU20450.1| tRNA pseudouridine synthase A [Spirochaeta thermophila DSM 6578] Length = 248 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++ Y+G+ + GWQRQ NG S+QG +E A+ + V VH AGRTDSGVHA+ Q +F Sbjct: 8 VVLAYDGTDFVGWQRQPNGRSVQGVVEDALARMHKHPVHVHAAGRTDSGVHAVGQCINFI 67 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + +PV ALN++L + L V FHAR+SA+RR Y Y + + +P Sbjct: 68 TDIDSLPVEKFALALNSFLP--RDVKALQAEEVPPDFHARYSAVRREYRYYVFSSPSPYP 125 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + + + D + A +VG HDF++F S + S +R I G + Sbjct: 126 HLRRYSLWVNRLPDVRLLNAYASCIVGEHDFSSFCSPSDPSPSKVRLIHTASWFPEGARL 185 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+V +FL +R+ VG++ + K + K L+A+DR AP GL+ V Sbjct: 186 VFRIVGNAFLWRMVRALVGTMLDLEKQKADPEMMWKILEARDRSAASDSAPAWGLFLHEV 245 Query: 245 EY 246 +Y Sbjct: 246 QY 247 >gi|294055498|ref|YP_003549156.1| tRNA pseudouridine synthase A [Coraliomargarita akajimensis DSM 45221] gi|293614831|gb|ADE54986.1| tRNA pseudouridine synthase A [Coraliomargarita akajimensis DSM 45221] Length = 250 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 136/249 (54%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ I Y+G+ + GWQRQ+NG ++Q +E A+ + + HG+GRTD+GVHA Q Sbjct: 1 MRWKCICSYDGTDFEGWQRQRNGLAVQNVLEAALSQIFNLPLKTHGSGRTDAGVHARGQC 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI-ITRQ 120 HFD L +AL++ L S + I + +VD++FHAR SAI + Y+YR + R Sbjct: 61 FHFDGDWPHDTGKLIRALHSILPKS--LRIERIDLVDERFHARHSAIGKRYVYRYHLGRA 118 Query: 121 APLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDV 177 P LE+ W +++ M+ AA LVG HDF+ + + H + S +P++ + D+ Sbjct: 119 HP--LEQRYVWACRDTAINFGAMQEAALRLVGTHDFSAYGATHGKDSDPNPVKNVYRLDL 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G I + +L+ +RSF G+L VG + + D+E+ L+++ R AP Sbjct: 177 VKHGRQIILTTEGSGYLYRMVRSFAGALYSVGRDRLSPDDIEEILRSKIRTHRIVTAPGV 236 Query: 238 GLYFDSVEY 246 GL D V Y Sbjct: 237 GLCLDEVFY 245 >gi|257463955|ref|ZP_05628340.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] gi|317061478|ref|ZP_07925963.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] gi|313687154|gb|EFS23989.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] Length = 242 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 129/238 (54%), Gaps = 4/238 (1%) Query: 9 EYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 +Y+GS + G+QRQ N ++QG IEK++F + E + + +GRTD GVHA++QV++F Sbjct: 9 QYDGSSFMGFQRQPNQRTVQGEIEKSLFHILREKIDLTSSGRTDRGVHAIQQVSNFFTAV 68 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 L AL+ L + I +L + VD +FHARFSA RSY Y I ++ P + Sbjct: 69 NIPSDRLFYALSRNL--PEDILLLQVEEVDSEFHARFSAKTRSYRYCITWKKNPFE-HRY 125 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 +A++ K E ++I Q +GRH+F FR ++P+R I V N + I + Sbjct: 126 KAYVKEKIESTEFLKI-LQVFIGRHNFQNFRLQDSSFANPMREIYSISVEEVENGMNIDI 184 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VA +FL +QIR +G+ V GK + + L+ + + LA GLY +EY Sbjct: 185 VANAFLKSQIRIMIGTALQVYFGKVEGDRITRMLEELETEFPKYLADSSGLYLYRIEY 242 >gi|224119986|ref|XP_002331109.1| predicted protein [Populus trichocarpa] gi|222872837|gb|EEF09968.1| predicted protein [Populus trichocarpa] Length = 326 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 146/317 (46%), Gaps = 73/317 (23%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ + G Q+Q N ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 7 RYLVAVEYIGTRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNVC 66 Query: 63 HFDLVR-----------EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ KA+N +L K I + ++ V FHARF A R Sbjct: 67 HVDVERISKRKPGEVLPPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVSAHFHARFKAQER 126 Query: 111 SYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR++ L+ EK RAW + + LD +M+ A + LVG HDF++FR+ CQA SP Sbjct: 127 TYFYRLLIGPELLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSPF 186 Query: 170 RTIDHFDV-------------------------NSFGNLIE------------------- 185 RT++ V +SF N + Sbjct: 187 RTLEELSVLEVVSTPYFPSITEREQNSSNGEGPHSFHNKCKTGLPTGSISNGFMAGGSNS 246 Query: 186 -------IRVVARSFLHT-QIRSFV--------GSLKLVGDGKWTSTDLEKALQAQDRKE 229 IR R ++ T + RSF+ G LK VG G T +D+E+ L A+ Sbjct: 247 GTDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSITA 306 Query: 230 CGPLAPPEGLYFDSVEY 246 P+AP GLY V+Y Sbjct: 307 ASPMAPACGLYLGHVKY 323 >gi|326692205|ref|ZP_08229210.1| tRNA pseudouridine synthase A [Leuconostoc argentinum KCTC 3773] Length = 261 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 132/258 (51%), Gaps = 14/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIF----LVTGEIVVVHGAGRT 51 M RY ++ Y+GS +FG+Q Q KNG ++QG + +A+ L T I VV GA RT Sbjct: 1 MPRYKAVVAYDGSEFFGFQVQTKNGVERQRTVQGELNRAVNQMAKLPTPAIKVV-GASRT 59 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D+GVHA QV HFDL + P + K LN L I I + V FHARF+ + Sbjct: 60 DTGVHAFGQVVHFDLPFDIQPEGVRKGLNTLLPRD--IMIKQVEKVADDFHARFNTHAKR 117 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y+YR+ T+ ++ LD ++ A L+G HDF +F + Q ++ +RT Sbjct: 118 YIYRVSTQDFTDPFKRRYTGHFHWRLDVARIQAALPDLLGEHDFASFAASGNQTATTVRT 177 Query: 172 IDHFDVNSFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 I DV + E+ +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 178 ITRADVEVKPDEQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIVRLIAVKDREQ 237 Query: 230 CGPLAPPEGLYFDSVEYS 247 AP GLY D + Y Sbjct: 238 ARFTAPASGLYLDEIYYD 255 >gi|299148560|ref|ZP_07041622.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_23] gi|298513321|gb|EFI37208.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_23] Length = 267 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V HARF A R+Y Y + T + Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLLPPD--ISIYRVCRVRPDTHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|309789641|ref|ZP_07684222.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG6] gi|308228377|gb|EFO82024.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG6] Length = 262 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 128/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+G+ + G Q Q G S+Q ++E+A +T E V+ AGRTD+GVHA+ Q Sbjct: 1 MRNIALRLAYDGTDFIGSQYQNQGRSVQEALEQAWEGLTQERRRVNLAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + +NA K+ ++I ++ VD FHAR SA RRSY Y I Sbjct: 61 VANIRTETRHSRRTILRGMNA--KLPPDVAIQAVAEVDPDFHARHSANRRSYRYLIDNNA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L + W + + LD M A L G HDF F ++ + S +RT ++S Sbjct: 119 AWLPNLRNYVWFVEQPLDQAAMAEALVRLEGTHDFAAFTALVPEQRSTVRTCYTARLSSV 178 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +LI I + A +FL +R VG++ LVG GK T + L+ +DRK GP A Sbjct: 179 TMFDRHLIAIDLAANAFLQHMVRVIVGTVVLVGRGKITPDGFQAILEGRDRKAAGPTAVA 238 Query: 237 EGLYFDSVEY 246 GL SV Y Sbjct: 239 HGLTLVSVGY 248 >gi|237756326|ref|ZP_04584878.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium yellowstonense SS-5] gi|237691512|gb|EEP60568.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium yellowstonense SS-5] Length = 243 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + I Y G+ Y GWQRQKNG IQ IE + + E + + GAGRTD+GVHALRQVA+ Sbjct: 6 YKLEISYIGTNYNGWQRQKNGIGIQQVIEDLLSELLKEKITLIGAGRTDAGVHALRQVAN 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + + LNA K+ ISIL + V F+ARFSA ++Y+Y+I T+ P Sbjct: 66 FKTNKHKNTKTIYTYLNA--KLPRDISILKVEEVPLSFNARFSAKGKTYIYKINTKPDPF 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT-IDHFDVNSF-- 180 + AW K LD M + D ++ +A IR ID ++ + Sbjct: 124 LYK--LAWYYDKKLDLIKMVEGINIIKQYKDLSSL----AKAGDYIRKEIDLRELKLYFD 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I I + A FL +R VG L +G G + +L+ ++ + APPEGLY Sbjct: 178 GKIITIEITASHFLRNMVRRIVGHLVALGRGSLSLEELKDIIEKKSPSHGKYTAPPEGLY 237 Query: 241 FDSVEY 246 +V Y Sbjct: 238 LKAVYY 243 >gi|289669396|ref|ZP_06490471.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 257 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 14/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADGQVQVICAGRTDAGVHGEC 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R W+ L ++ +I++ V FHARFSA R Y Y Sbjct: 61 QVVHFDSDARREPRGWM-------LGTTARLPPSIAVRWCVPVADDFHARFSARARRYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++ RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + Sbjct: 114 RLLNRQIRPALYRQTVSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRNLQA 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR G A Sbjct: 174 IHVQRIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGERPADWIATLLAGRDRTVAGQTA 233 Query: 235 PPEGLYF 241 PP+GL F Sbjct: 234 PPQGLVF 240 >gi|237736308|ref|ZP_04566789.1| tRNA pseudouridine synthase A [Fusobacterium mortiferum ATCC 9817] gi|229421656|gb|EEO36703.1| tRNA pseudouridine synthase A [Fusobacterium mortiferum ATCC 9817] Length = 243 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 17/244 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GS ++G+QRQ N ++QG IEK + +V + + + +GRTD GVHAL QV++F Sbjct: 10 YDGSMFYGFQRQPNKRTVQGEIEKLLNVVLKDEIDMVSSGRTDRGVHALIQVSNF-YTTS 68 Query: 70 WVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +P+ +L + L I +L++ VD +F++RF A +R Y Y I + P Sbjct: 69 TIPLDRLKYVLMRGLPL------DIELLDIEEVDIEFNSRFDAQKRGYTYIISWERDPF- 121 Query: 125 LEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-N 182 K R + K ++ E + LVG HDF FR C + + IR I +V G N Sbjct: 122 --KNRYETYVNKEIEAERFQKILDILVGVHDFNNFRMSDCGSKTSIREIYSIEVKKIGSN 179 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + ++ SFL +QIR +G+ + G S +E+ L+ D+K +A P GLY Sbjct: 180 RISVEILGSSFLKSQIRIIIGTALNIYFGNLPSNYMEEMLKNPDKKYLKKVAEPNGLYLS 239 Query: 243 SVEY 246 V+Y Sbjct: 240 KVDY 243 >gi|332522319|ref|ZP_08398571.1| tRNA pseudouridine synthase A [Streptococcus porcinus str. Jelinkova 176] gi|332313583|gb|EGJ26568.1| tRNA pseudouridine synthase A [Streptococcus porcinus str. Jelinkova 176] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 MIRY +I Y+GS + G+QRQ +IQ IEK + L G+ + + GAGRTD+GVHA Sbjct: 1 MIRYKAVISYDGSQFSGFQRQTKARTIQEEIEKTLMRLNKGKFIAIQGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V FHAR+S ++Y + + Sbjct: 61 QVIHFDLAERRDLEKLRFALDT--QTPEDIDVISVEEVSNNFHARYSKHLKTYEFIVDVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD + +A + LVG HDFT F + + +RT+ D Sbjct: 119 RPKNPMMRKYATHYPYPLDFSLIELAIKDLVGTHDFTGFTAAGTSVENKVRTLYQADCSF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +S + FL+ Q+R+ VG+L +G+ + + L+ ++R+ GP Sbjct: 179 DSHRQCLIFTFTGNGFLYKQVRNMVGTLLKIGNQRMPVEQVRIILEQKNRQLAGPTIAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|15618490|ref|NP_224776.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae CWL029] gi|33241935|ref|NP_876876.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae TW-183] gi|4376873|gb|AAD18719.1| Pseudouridylate Synthase I [Chlamydophila pneumoniae CWL029] gi|33236445|gb|AAP98533.1| pseudouridylate synthase I [Chlamydophila pneumoniae TW-183] Length = 267 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G+ Y GWQ+Q N SIQ IE ++ +T + +GRTD+GVHA Q Sbjct: 1 MTKVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTPLIASGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF + + KALNA L I I ++++ D FHAR+ AI + Y Y + Sbjct: 61 VAHFRAPDHPLFANANLTKKALNAILP--KDIVIRDVALFDDNFHARYLAIAKEYRYSLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ + E M+ A L+G HDF +F + +S +RTI D+ Sbjct: 119 RLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYNSTVRTIYTLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + I FL+ +R+ VG+L VG G + L L+ ++R+E AP Sbjct: 179 VDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPAY 238 Query: 238 GLYFDSVEYS 247 GL V YS Sbjct: 239 GLSLHHVCYS 248 >gi|313888069|ref|ZP_07821747.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846024|gb|EFR33407.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b] Length = 244 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+Q Q N +++G + I V + AGRTD GVHA Q A+F Sbjct: 8 INYDGTNFHGFQLQPNERTVEGELNLGIEKTVKHPVKIFYAGRTDRGVHAEGQYANFYSD 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L K LN + + +S+++ V FHARF A + Y Y + + AL + Sbjct: 68 TTIDIGNLPKVLN--FNLPEDVSVVDAKYVPDAFHARFDAKLKKYRYVVHRSRYRHALLR 125 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 RA+ P +D + MR A L+G HDF +F IR+I+ DV G+ + Sbjct: 126 NRAYEYPYDVDPDRMREALASLIGEHDFNSFMGRGAIVKDSIRSIERIDVIEDGDFLYFD 185 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VA+SFL IR G++ +G G+ +++AL+ + RK GP AP GLY V+Y Sbjct: 186 FVAKSFLKNMIRIVTGTVLEIGRGQREIEYMKEALEKKSRKAAGPTAPACGLYLLDVKY 244 >gi|257440210|ref|ZP_05615965.1| tRNA pseudouridine synthase A [Faecalibacterium prausnitzii A2-165] gi|257197244|gb|EEU95528.1| tRNA pseudouridine synthase A [Faecalibacterium prausnitzii A2-165] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + Y+G+ Y G+Q Q NG S+ + + + V + G RTD+GVHAL Sbjct: 1 MQNYLLTLAYDGTNYCGFQVQPNGRSVAQTFQDGLEAVLHSRPDIKGCSRTDAGVHALGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F P L A+N +L I +L +V ++FHAR++A ++YLYRI Sbjct: 61 ALNFHAETRIPPEKLPLAINQHLPPD--IRVLCARVVPEEFHARYAAHTKTYLYRIHNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDV 177 ++ +P+ LD + M+ AA+ VG+HDF + A +RTI V Sbjct: 119 IDSPFDEKYYTRVPRRLDVDAMQRAAEQFVGKHDFLALCAAGSSAAAHGDTVRTITDCHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ ++I V A +L+ +R G+L VG G+ + L ++DR + GP P + Sbjct: 179 TRKGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRMQPDAIPGILASRDRSQAGPTLPAK 238 Query: 238 GLYFDSVEYS 247 GL+ + V+Y Sbjct: 239 GLFLEKVDYD 248 >gi|326335636|ref|ZP_08201823.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692402|gb|EGD34354.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 247 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 128/245 (52%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG YFGWQ+Q + S+Q +E+AI L+ E + + GAGRTD+GVHA Sbjct: 1 MRFFIELSYNGKNYFGWQKQPHSLSVQEELERAISLLLHEEITLVGAGRTDTGVHARDYF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +P L LN++L TI+I + + HARF AI R+Y Y I + Sbjct: 61 AHFDFSLP-LPENLVNKLNSFL--PKTIAIKGIFPMKDAAHARFDAISRTYQYFISREKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ ++ + + L M A + L+ +DF F + + I + Sbjct: 118 PFLYEQ--SYYVYQPLAISQMNRACEILLKHNDFQCFSKTNTDVRTYICHLTEAFWKEED 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ R+ A FL +R+ VG++ VG GK + ++ E+ L +++R + G P L+ Sbjct: 176 SLLIFRITADRFLRNMVRAIVGTMIEVGIGKISLSNFEQILLSKNRSQAGYSVPGHALFL 235 Query: 242 DSVEY 246 + V Y Sbjct: 236 EKVVY 240 >gi|303234561|ref|ZP_07321198.1| tRNA pseudouridine synthase A [Finegoldia magna BVS033A4] gi|302494395|gb|EFL54164.1| tRNA pseudouridine synthase A [Finegoldia magna BVS033A4] Length = 244 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 14/247 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA QV +F Sbjct: 6 LTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQVCNFI 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR---QAP 122 + + +N + SD+I I+ VD FHARFSA ++Y Y + + + Sbjct: 66 VDTDISANQFLMGVNHF--TSDSIVIVKSEEVDLDFHARFSAKSKTYKYILCNKYYMEPW 123 Query: 123 LALEKG-RAWLIPKSL--DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 KG R + + L C +M L+GRHDFT+F + + +P+RTID + Sbjct: 124 FNDYKGHRKYYLDFDLLLKCRDM------LIGRHDFTSFVNDLEEDINPVRTIDEITIEK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GL Sbjct: 178 IDDDIVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPCGL 237 Query: 240 YFDSVEY 246 Y ++EY Sbjct: 238 YLMNIEY 244 >gi|291542954|emb|CBL16064.1| pseudouridylate synthase I [Ruminococcus bromii L2-63] Length = 266 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y+G + GWQ Q+N ++Q + + A+ + G V G RTDSGVHA Sbjct: 15 LTISYDGKEFHGWQIQQNAMTVQEAFQTALSKIIGNDFDVKGCSRTDSGVHANMYCISLK 74 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P L ALN +L +S I++L+ V FHAR+S + Y+Y+I + Sbjct: 75 TEHPIKPERLKAALNRWLPLS--IAVLDCKEVAPDFHARYSCTSKEYIYKIWNSEVRNPF 132 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTIDHFDVNSFGNLI 184 G A +D + AAQ VGRHDFT+F ++ + + R + F V G+L+ Sbjct: 133 LDGYALHYRYKIDENLLDKAAQAYVGRHDFTSFCTLDNREKGDMTRNVKAFSVTREGDLV 192 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 ++V A FL+ +R VG+L + GK ++ ++ ++RK GP A GLY + V Sbjct: 193 TMKVEADGFLYNMVRIMVGTLLRIQQGKIAPDEIPSIIEKKNRKYSGPTAQACGLYLNCV 252 Query: 245 EY 246 Y Sbjct: 253 NY 254 >gi|220903970|ref|YP_002479282.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868269|gb|ACL48604.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 259 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 130/268 (48%), Gaps = 33/268 (12%) Query: 2 IRYCMIIEYNGSGYFGWQ---RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R ++I Y G+GY GWQ + K ++QG++E A+ + G+ V VHG+GRTDSGVHA Sbjct: 1 MRLKLLISYVGTGYSGWQIQEKPKPPPTVQGALEAALRTIAGKAVRVHGSGRTDSGVHAH 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + +LNA L I +L+ S FHAR A+R++Y Y+ Sbjct: 61 GQVAHCDIPDTRAGLDWRHSLNAVL--PRDIRVLDASPAAPDFHARKDALRKTYAYQFW- 117 Query: 119 RQAPLALEKGRAWLIPK---------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 + R +L P LD + MR A L+GRHDF R+ S Sbjct: 118 --------QDRRFLPPHVRPYVWNCGMLDLDAMRDALPFLLGRHDFAGLRNAGTDVESTE 169 Query: 170 RTIDHFDVNSF---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 RTI +++ ++ + + A FL +R+ G L G GK + Sbjct: 170 RTIMDARLDALAPCEYYPPHAPMLRLTITADGFLKQMVRNVAGLLAACGQGKIQPAQIPA 229 Query: 221 ALQAQDRKECGPL-APPEGLYFDSVEYS 247 L A+DR+ + APPEGL SV+Y Sbjct: 230 LLAARDRQAVPSVTAPPEGLALVSVKYP 257 >gi|116617361|ref|YP_817732.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272438|sp|Q03ZL3|TRUA_LEUMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116096208|gb|ABJ61359.1| Pseudouridylate synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 255 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 132/258 (51%), Gaps = 14/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLV----TGEIVVVHGAGRT 51 M RY +I Y+G+ +FG+Q Q KNG ++QG + K I + + +I VV GA RT Sbjct: 1 MPRYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVV-GASRT 59 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D+GVHA QV HFDL P + K +N L + + ++ V FHARF+ + Sbjct: 60 DTGVHAFGQVVHFDLPFNIDPEGVRKGMNTLLPFD--VVVNHVEHVSDDFHARFNTHSKR 117 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y+YR+ T ++ LD ++ A L+G HDF +F + + ++ IR Sbjct: 118 YIYRVSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASFAASGNETATTIRL 177 Query: 172 IDHFDVNSFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 I DV+ EI +FL+ QIR VG L +G GK D+ + ++ +DR++ Sbjct: 178 ITRADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDREQ 237 Query: 230 CGPLAPPEGLYFDSVEYS 247 AP GLY D ++Y+ Sbjct: 238 ARYTAPASGLYLDEIDYN 255 >gi|302379698|ref|ZP_07268183.1| tRNA pseudouridine synthase A [Finegoldia magna ACS-171-V-Col3] gi|302312605|gb|EFK94601.1| tRNA pseudouridine synthase A [Finegoldia magna ACS-171-V-Col3] Length = 244 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 14/247 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA QV +F Sbjct: 6 LTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQVCNFI 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR---QAP 122 + + +N + SD+I I+ VD FHARFSA ++Y Y + + + Sbjct: 66 VDTDISANQFLMGVNHF--TSDSIVIVKSEEVDLDFHARFSAKSKTYKYILCNKYYMEPW 123 Query: 123 LALEKG-RAWLIPKSL--DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 KG R + + L C +M L+G+HDFT+F + + +P+RTID + Sbjct: 124 FNDYKGHRKYYLDFDLLLKCRDM------LIGKHDFTSFVNDLEEDINPVRTIDEITIEK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GL Sbjct: 178 IDDDIVFSFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGL 237 Query: 240 YFDSVEY 246 Y +EY Sbjct: 238 YLMDIEY 244 >gi|188994646|ref|YP_001928898.1| tRNA pseudouridine synthase A [Porphyromonas gingivalis ATCC 33277] gi|238691471|sp|B2RIV6|TRUA_PORG3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188594326|dbj|BAG33301.1| putative tRNA pseudouridine synthase A [Porphyromonas gingivalis ATCC 33277] Length = 252 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 124/252 (49%), Gaps = 12/252 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + YNG+ Y GWQ Q N S+Q ++E+AI + + V V GAGRTD+GVHA Sbjct: 1 MARFFIYLAYNGTRYSGWQTQPNAPSVQQTVEEAISTIVRQPVGVVGAGRTDAGVHAHEM 60 Query: 61 VAHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAH DL + P L + LN L I I ++ V HARF AI R+Y Y + Sbjct: 61 VAHADLPCD-TPAEAATLTERLNKLLPRD--IVIYRMAPVKADAHARFDAISRTYHYYLT 117 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP---IRTIDH 174 ++ P +G + LD E M AA L DFT+F +H + I Sbjct: 118 EQKDPFM--EGLMLKTYRKLDFERMNEAAALLPRYIDFTSFSKLHTDVKTNNCRITEARW 175 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + + A FL +R+ VG+L VG GK + TD +++QDR G A Sbjct: 176 MPLAQTGQWV-FSITADRFLRNMVRAIVGTLFHVGTGKLSITDFRDIIESQDRSRAGSSA 234 Query: 235 PPEGLYFDSVEY 246 P LY + V Y Sbjct: 235 PAHALYLERVVY 246 >gi|160887061|ref|ZP_02068064.1| hypothetical protein BACOVA_05075 [Bacteroides ovatus ATCC 8483] gi|156107472|gb|EDO09217.1| hypothetical protein BACOVA_05075 [Bacteroides ovatus ATCC 8483] Length = 267 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V HARF A R+Y Y + T + Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLLPPD--ISVYRVCRVRPDTHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|304384407|ref|ZP_07366813.1| tRNA pseudouridine synthase A [Prevotella marshii DSM 16973] gi|304334505|gb|EFM00792.1| tRNA pseudouridine synthase A [Prevotella marshii DSM 16973] Length = 260 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 127/259 (49%), Gaps = 27/259 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+GY GWQ Q NG S+Q +++A+ +V + V GAGRTD+GVHA R Sbjct: 1 MHRYFIHFSYDGTGYHGWQIQPNGISVQEVLQQALSVVLRREMTVTGAGRTDTGVHARRM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD+ L LN L +++ N+ V HARFSA RR+Y Y I + Sbjct: 61 TAHFDIDDATDCTQLTYKLNRLLPRD--VAVENIEEVAPDLHARFSARRRTYHYYIHFAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P P LD M AA+ L+ +DF F C++ + ++T +F Sbjct: 119 NPFKERYSCELHFP--LDFNRMNEAARLLLQTNDFAAF----CKSHTDVKT-------TF 165 Query: 181 GNLIE------------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 N+ E R+ A FL +R+ VG+L VG G+ ++ D ++ + R Sbjct: 166 CNVTEAVWIRQTADEWYFRISADRFLRNMVRAVVGTLIDVGRGRLSTDDFRAIIETKRRT 225 Query: 229 ECGPLAPPEGLYFDSVEYS 247 G P +GL+ + +EY Sbjct: 226 AAGESMPAKGLFLEEIEYE 244 >gi|317968841|ref|ZP_07970231.1| tRNA pseudouridine synthase A [Synechococcus sp. CB0205] Length = 289 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 122/247 (49%), Gaps = 6/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 R + ++Y+GS Y GWQRQ S+Q ++E+A+ + G VV AGRTDSGVHA Q Sbjct: 12 RIALCLQYDGSAYCGWQRQPRDPSVQEALERALVQLDPDGPATVV-AAGRTDSGVHAAGQ 70 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P ALN L S I + + + V +HA FSA R Y Y I + Sbjct: 71 VVHFDCAGPIPPHRWPAALNGRLPAS--IRVRSAASVPADWHACFSATYRRYRYTIYNAR 128 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD + MR A + ++G HDF F S T+ V Sbjct: 129 IPNLFLAPWSWHRYQFRLDEDRMREALEGMLGEHDFAAFERAGSARSHSRTTLQEVSVQR 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+E+ + A FL+ +R +G L VG+G+ + + + Q R+E APP+GL Sbjct: 189 RGDLLEVELQASGFLYGMVRLVMGQLVAVGEGRLSLEAFSRRWRNQAREEVKEAAPPQGL 248 Query: 240 YFDSVEY 246 V Y Sbjct: 249 CLLRVGY 255 >gi|56751899|ref|YP_172600.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 6301] gi|60416392|sp|O24712|TRUA_SYNP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56686858|dbj|BAD80080.1| tRNA pseudouridine synthase [Synechococcus elongatus PCC 6301] Length = 294 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 115/245 (46%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVHA QVA Sbjct: 15 RIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHAAAQVA 74 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN +++ ++I +IV +HARFSA R Y Y I T P Sbjct: 75 HFETTSPIPAHRWPSVLNG--RLTPDLNIRAAAIVPANWHARFSASYRRYRYTIYTDPCP 132 Query: 123 LALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 W ++ CEN M+ A Q LVG H F+ + + V Sbjct: 133 NLFLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHAWVHVQDAWVRRRD 192 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LIEI V A FL+ IR VG L VG+G + Q R APP+GL Sbjct: 193 SLIEIEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHAAPPQGLCL 252 Query: 242 DSVEY 246 + Y Sbjct: 253 LRIGY 257 >gi|297587193|ref|ZP_06945838.1| tRNA-pseudouridine synthase I [Finegoldia magna ATCC 53516] gi|297575174|gb|EFH93893.1| tRNA-pseudouridine synthase I [Finegoldia magna ATCC 53516] Length = 244 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 14/247 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA QV +F Sbjct: 6 LTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVNQPVKINGAGRTDKGVHAKGQVCNFI 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR---QAP 122 + + +N + SD+I I+ VD FHARFSA ++Y Y + + + Sbjct: 66 VDTDISANQFLMGVNHF--TSDSIVIVKSEEVDLDFHARFSAKSKTYKYILCNKYYMEPW 123 Query: 123 LALEKG-RAWLIPKSL--DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 KG R + + L C +M L+G+HDFT+F + + ++PIRTID + Sbjct: 124 FNDYKGHRKYYLDFDLLLKCRDM------LIGKHDFTSFVNDLEEDTNPIRTIDEITIEK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GL Sbjct: 178 IDDDFVFTFKAESFLRNMVRILVGSMVDVARGRKSIEWLKNALENKDRQSAGITIEPCGL 237 Query: 240 YFDSVEY 246 Y +EY Sbjct: 238 YLMDIEY 244 >gi|255556594|ref|XP_002519331.1| pseudouridylate synthase, putative [Ricinus communis] gi|223541646|gb|EEF43195.1| pseudouridylate synthase, putative [Ricinus communis] Length = 344 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 134/254 (52%), Gaps = 11/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ Y GWQ Q++ +IQ +EKA+ VT + +++ GA RTD+GVHA Sbjct: 72 KWRLVIAYDGTRYAGWQFQQSPPTIQCYLEKALIQVTKLDRKDLLLVGASRTDTGVHAFG 131 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + + ALN L I + +S +FHARFS I + Y Y+I Sbjct: 132 QVAHFVTPFNYPSLDTIHAALNGLL--PPDIRVREISPAVPEFHARFSTISKLYHYKIYN 189 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR--SIHCQASSPIRTIDHFD 176 + A+ L+ MR AA++ +G HDF+ F S + +P++TI FD Sbjct: 190 DTFMDPFLRHYAYHSTYKLNAAAMRQAAKYFIGSHDFSAFANASRDDRVPNPVKTIFRFD 249 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA-- 234 V G L+++ V FL+ Q+R+ V L +G + K L A+DR+E A Sbjct: 250 VIEMGALLQLEVEGTGFLYRQVRNMVALLLQIGKEAVPPEIVPKILAARDRRELAKYALP 309 Query: 235 -PPEGLYFDSVEYS 247 PP GL S++Y+ Sbjct: 310 TPPHGLCLVSIKYN 323 >gi|229053988|ref|ZP_04195422.1| tRNA pseudouridine synthase A [Bacillus cereus AH603] gi|228721406|gb|EEL72927.1| tRNA pseudouridine synthase A [Bacillus cereus AH603] Length = 252 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 9/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ ++ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + P L+ ++R A + +G HDFT+F S +RTI Sbjct: 121 LLSKTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIG 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP Sbjct: 181 LIEQDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPG 240 Query: 237 EGLYFDSVEYS 247 GLY V Y+ Sbjct: 241 HGLYLWQVNYN 251 >gi|256370635|ref|YP_003108460.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri SMDSEM] gi|256009427|gb|ACU52787.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri SMDSEM] Length = 270 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/275 (32%), Positives = 135/275 (49%), Gaps = 40/275 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQ 60 +R+ + I Y GS FGWQ QK SIQ +IE + FL+ +I ++ GAGRTD+GVHA++ Sbjct: 1 MRFFIEISYKGSSLFGWQIQKKNLSIQETIETCLSFLLKKKIKII-GAGRTDTGVHAIQM 59 Query: 61 VAHFDLVREW---------------VPVILCK---------ALNAYLKISDTISILNLSI 96 AHFDL + + L K LN++L ++ I I+N+ Sbjct: 60 FAHFDLTFDLTFDLTFDLTFDLTFDLTFDLTKNHINNHFKSKLNSFLPLN--IKIINIFS 117 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 V K HARF+AI R Y YRI + P + WL ++ + ++ A L DF+ Sbjct: 118 VKKNIHARFNAISRVYEYRISLSKDPFLFQTSWQWLSKNQIELKILKKGANILKKYKDFS 177 Query: 157 TF-----RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 +F + C+ S+ + N++ R+ A FL +RS VG+L +G Sbjct: 178 SFCKEKSKKNLCEISTAKWILKK-------NILYFRIEANRFLRNMVRSLVGTLIELGIK 230 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 K T D K ++A++R G AP +GL+ + Y Sbjct: 231 KITIKDFIKIIEAKNRNLAGITAPAKGLFLIKINY 265 >gi|81301016|ref|YP_401224.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 7942] gi|81169897|gb|ABB58237.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 7942] Length = 294 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 115/245 (46%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVHA QVA Sbjct: 15 RIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHAAAQVA 74 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN +++ ++I +IV +HARFSA R Y Y I T P Sbjct: 75 HFETTSPIPAHRWPSVLNG--RLTPDLNIRAAAIVPANWHARFSASYRRYRYTIYTDPCP 132 Query: 123 LALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 W ++ CEN M+ A Q LVG H F+ + + V Sbjct: 133 NLFLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHAWVHVQDAWVRRRD 192 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LIEI V A FL+ IR VG L VG+G + Q R APP+GL Sbjct: 193 SLIEIEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHAAPPQGLCL 252 Query: 242 DSVEY 246 + Y Sbjct: 253 LRIGY 257 >gi|251781741|ref|YP_002996043.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390370|dbj|BAH80829.1| phosphomethylpyrimidine kinase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 249 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + L + + V +HGAGRTD+GVHA Sbjct: 1 MTRYRATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASVQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPADIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVENKVRTITEATLVQ 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G L+ FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLV-FTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAG 237 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 238 NGLYLKEIRYE 248 >gi|229542172|ref|ZP_04431232.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1] gi|229326592|gb|EEN92267.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q ++Q IEKA+ L G V +GRTD+GVHA+ Sbjct: 1 MKRVKCTVSYDGSRFAGYQVQPGQRTVQQEIEKALATLHKGRHVKTAASGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L IS+ + D FHAR+S + Y YRI Sbjct: 61 QVIHFDTDLSIPETSWPAALNSLL--PGDISVSKAAYADPAFHARYSVKEKEYRYRIYFS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A + SLD E M AA+ ++G HDFT+F S + IRT+ Sbjct: 119 HVRSPFKHRYALRVWYSLDIEAMEAAAETVLGTHDFTSFCSAKTEVEDKIRTLKEIRFLQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + I FL+ +R G+L +G GK ++ + L+ ++R G APPEGL Sbjct: 179 QDDELVICFKGNGFLYNMVRILTGTLLEIGSGKRDPGEMREILEKRNRIYAGKTAPPEGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWKVSY 245 >gi|218245114|ref|YP_002370485.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8801] gi|226708647|sp|B7K222|TRUA_CYAP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218165592|gb|ACK64329.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8801] Length = 293 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 117/245 (47%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y GS + GWQ Q N ++Q IE AI V GE V +HGAGRTD+GVHA QVA Sbjct: 11 RVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTDAGVHAAAQVA 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+V LNA ++ + I I + V +HARFSA R Y Y T Q P Sbjct: 71 HFDMVSPIPASRWVDILNA--RLPEDILIRGSAQVPLTWHARFSAQWRRYRYTFYTEQRP 128 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K +W LD M+ A L+GRH F + + + G Sbjct: 129 NLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEVQSTHCHRQG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R VG L VG GK + + + + Q R+ AP +GL Sbjct: 189 PFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLCL 248 Query: 242 DSVEY 246 V Y Sbjct: 249 LRVGY 253 >gi|257058139|ref|YP_003136027.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8802] gi|256588305|gb|ACU99191.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8802] Length = 293 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 117/245 (47%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y GS + GWQ Q N ++Q IE AI V GE V +HGAGRTD+GVHA QVA Sbjct: 11 RVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTDAGVHAAAQVA 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+V LNA ++ + I I + V +HARFSA R Y Y T Q P Sbjct: 71 HFDMVSPIPASRWVDILNA--RLPEDILIRGSAQVPLTWHARFSAQWRRYRYTFYTEQRP 128 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K +W LD M+ A L+GRH F + + + G Sbjct: 129 NLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEVQSTHCHRQG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R VG L VG GK + + + + Q R+ AP +GL Sbjct: 189 PFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLCL 248 Query: 242 DSVEY 246 V Y Sbjct: 249 LRVGY 253 >gi|227431309|ref|ZP_03913362.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352902|gb|EEJ43075.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 255 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 132/258 (51%), Gaps = 14/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLV----TGEIVVVHGAGRT 51 M RY +I Y+G+ +FG+Q Q KNG ++QG + K I + + +I VV GA RT Sbjct: 1 MPRYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVV-GASRT 59 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D+GVHA QV HFDL P + K +N L + + ++ V FHARF+ + Sbjct: 60 DTGVHAFGQVIHFDLPFNIDPEGVRKGMNTLLPFD--VVVNHVEHVSDDFHARFNTHSKR 117 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y+YR+ T ++ LD ++ A L+G HDF +F + + ++ IR Sbjct: 118 YIYRVSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASFAASGNETATTIRL 177 Query: 172 IDHFDVNSFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 I DV+ EI +FL+ QIR VG L +G GK D+ + ++ +DR++ Sbjct: 178 ITRADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDREQ 237 Query: 230 CGPLAPPEGLYFDSVEYS 247 AP GLY D ++Y+ Sbjct: 238 ARYTAPASGLYLDEIDYN 255 >gi|295102064|emb|CBK99609.1| pseudouridylate synthase I [Faecalibacterium prausnitzii L2-6] Length = 251 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL + Sbjct: 1 MNYLLKLSYDGTNYCGFQVQPNGRSVAAAFQDALEAVLGCRPDIKGCSRTDAGVHALGFM 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L ALN +L I L +V FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPAAKLPLALNQHLPPD--IRALEARVVPDDFHARYAAHTKTYLYRIHNSPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS---PIRTIDHFDVN 178 +P LD + M+ AAQ+ VG+HDF + A++ +RTI DV Sbjct: 119 DSPFAARYYTKVPGRLDADRMQQAAQYFVGKHDFLALCASGSSAAAHGDTVRTITACDVQ 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+I V A +L+ +R G+L G G+ + L +++RK GP +G Sbjct: 179 RRGDDIDITVTADGYLYNMVRILAGTLCEAGAGRLAPEAVPGILASRERKNAGPTLAAKG 238 Query: 239 LYFDSVEY 246 L+ SV+Y Sbjct: 239 LFLKSVDY 246 >gi|330444180|ref|YP_004377166.1| tRNA pseudouridine synthase A [Chlamydophila pecorum E58] gi|328807290|gb|AEB41463.1| tRNA pseudouridine synthase A [Chlamydophila pecorum E58] Length = 267 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ +IQ +E + V + +GRTDSGVHA Q Sbjct: 1 MKKIVLLLAYQGTAYAGWQRQPQHLTIQEVLETLFMPILHSRVPMVASGRTDSGVHAYGQ 60 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V HF L + P L K LNA ++ I + ++++ D FHAR+ AI + Y Y + Sbjct: 61 VVHFSLPDHPLTSDPCKLKKLLNA--RLPKDIVVRDIALTDASFHARYCAIAKEYHYTLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ ++ P + + M AQ+L+G HDF +F ++ + +S IRT+ + Sbjct: 119 KNIKPLPWQRNFSYSPPHRIRADLMHQGAQYLIGTHDFASFANLGREYTSTIRTLYKVAI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ +R+ VG+L + G + + L+ ++R++ P AP Sbjct: 179 EETEHTLTLIFKGNGFLYKMVRNLVGALLDINKGAYPPEHILNMLKEKNRRKGPPSAPAH 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLHHVCY 247 >gi|198276843|ref|ZP_03209374.1| hypothetical protein BACPLE_03048 [Bacteroides plebeius DSM 17135] gi|198270368|gb|EDY94638.1| hypothetical protein BACPLE_03048 [Bacteroides plebeius DSM 17135] Length = 252 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 127/251 (50%), Gaps = 12/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY + + Y+G+ Y GWQ Q NGSS+Q ++ KA+ + E + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLAYDGTNYHGWQIQPNGSSVQETLMKALHTFLRDEAIEVVGAGRTDAGVHARL 60 Query: 60 QVAHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHFD+ EW+ + LN L IS+ + V++ HARF A R+Y Y + Sbjct: 61 MVAHFDV--EWMLDEDTVTDKLNRLLPPD--ISVYRVRRVNQDAHARFDATYRTYKYYVT 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHF 175 T++ P + W + + LD M AAQ L DFT+F +H + I H+ Sbjct: 117 TQKNP--FNRAYCWRLFQPLDFTKMNEAAQILFDYTDFTSFSKLHTDVKTNNCKIMHAHW 174 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D S + + A FL +R+ VG+L VG GK + K ++ ++R G P Sbjct: 175 DQVSETEWV-FTIQADRFLRNMVRAIVGTLVEVGRGKLSVEGFRKVIEEKNRCSAGTSVP 233 Query: 236 PEGLYFDSVEY 246 L+ + Y Sbjct: 234 GHALFLVDIGY 244 >gi|225387194|ref|ZP_03756958.1| hypothetical protein CLOSTASPAR_00946 [Clostridium asparagiforme DSM 15981] gi|225046673|gb|EEG56919.1| hypothetical protein CLOSTASPAR_00946 [Clostridium asparagiforme DSM 15981] Length = 259 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q N +I+ + KA+ + E + V GA RTD+GVHA Sbjct: 7 MRRIRLVVAYDGTNYHGWQYQPNAVTIEEVLNKALTELLREPIAVIGASRTDAGVHAQGN 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C A+N ++ + I + + V +H R ++Y Y+I+ R+ Sbjct: 67 VAVFDTKNRMAADKICLAVNQ--RLPEDIRVQSSEEVATDWHPRKRRCVKTYEYKILNRR 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 + ++ + LD E MR AA+ ++G HDF +F S Q + +RT+ + Sbjct: 125 IEMPDKRLYTYHCYYDLDLEKMRQAAEFILGEHDFKSFCSAKTQVTDTVRTVYDLKLERD 184 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IR+ FL+ +R G+L G G + + L A+DR++ GP AP +GL Sbjct: 185 QEDVITIRITGSGFLYNMVRIIAGTLLWAGTGLIRPEAVGEILAAEDRRKAGPTAPAKGL 244 Query: 240 YFDSVEY 246 + Y Sbjct: 245 TLIRMHY 251 >gi|320528746|ref|ZP_08029898.1| tRNA pseudouridine synthase A [Solobacterium moorei F0204] gi|320130956|gb|EFW23534.1| tRNA pseudouridine synthase A [Solobacterium moorei F0204] Length = 361 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 125/248 (50%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY ++ Y G Y GWQ Q+ G SIQ +E I +T E V V G+GRTD+GV+A Q Sbjct: 1 MMRYKCVVSYVGRNYSGWQSQRKGDSIQEILETVIERITQEKVNVIGSGRTDAGVNAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD RE A+NA+L + I I+++ D FHAR++ + Y YRI Sbjct: 61 VFMFDTKREMPARKWMGAINAFL--PNDIHIMSVEEEDDCFHARYNVRFKQYNYRI--NN 116 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVN 178 P K A+ P LD E M+ +LVG HDFT+ S + +RT+ + Sbjct: 117 GPYNVFTKDTAFQCPIHLDVEKMKEGIPYLVGTHDFTSLNSSSLEEYPDQVRTVRSITLT 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +I + V + FL +R L +G K+ + +++ L+A+ + +P EG Sbjct: 177 EEDGVITLAFVGKGFLRYMVRMMASVLIEIGKRKYEPSHIQEILEAKRKSFPHKNSPAEG 236 Query: 239 LYFDSVEY 246 L + V+Y Sbjct: 237 LTLEYVDY 244 >gi|258509450|ref|YP_003172201.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG] gi|257149377|emb|CAR88350.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG] gi|259650729|dbj|BAI42891.1| tRNA pseudouridine synthase [Lactobacillus rhamnosus GG] Length = 247 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSLMPLD--IEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPAANELVFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|16329915|ref|NP_440643.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803] gi|3915173|sp|P73295|TRUA_SYNY3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1652401|dbj|BAA17323.1| pseudouridine synthase 1 [Synechocystis sp. PCC 6803] Length = 275 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 121/246 (49%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++++Y G+ + GWQRQ N SSIQ +E AI V G+ V +HGAGRTD+GVHA QVA Sbjct: 11 RVALVMQYLGTHFHGWQRQPNFSSIQEEVELAIAKVVGQPVTLHGAGRTDAGVHAAAQVA 70 Query: 63 HF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF D V + P K LN +L I + + VD +HARFSA+ R Y Y I T Q Sbjct: 71 HFDDPVGQIPPHRWSKILNGHLP--QDIIVRGSAAVDSHWHARFSALWRRYRYSIYTDQW 128 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +W + L + ++ A + L+G+H F + + Sbjct: 129 PNLFADQFSWHYYRFPLQEKTIQAAMEPLLGKHHLAAFHRAGSARRHSWVEVQGVECYRR 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + + A FL+ +R VG L VG G+ + TD Q R AP +GL Sbjct: 189 GPMVYLEIQANGFLYGMVRLLVGMLAEVGSGQRSLTDFNDIWVNQRRDLVKYAAPAKGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|67923564|ref|ZP_00517037.1| tRNA pseudouridine synthase [Crocosphaera watsonii WH 8501] gi|67854590|gb|EAM49876.1| tRNA pseudouridine synthase [Crocosphaera watsonii WH 8501] Length = 285 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 115/246 (46%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y GS + GWQRQ N ++Q IE AI V G +HGAGRTD+GVHA QVA Sbjct: 12 RVALVIQYQGSRFHGWQRQPNQRTVQEDIETAIAQVLGYHTPIHGAGRTDAGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD V P LN ++ + I I V +HARFSA+ R Y Y T + P Sbjct: 72 HFDYVSPIPPQRWADILNH--RLPEDILIRGSQGVPATWHARFSALWRRYRYSFYTDKCP 129 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K +W + L+ E M+ A L+G+H FR + G Sbjct: 130 NLFVKPFSWHYYYEPLNVELMQKALNPLLGKHHLAAFRRAGSHRHHSWVEVQDTQCYRQG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R VG L VG GK + + Q Q R+ AP +GL Sbjct: 190 PFIHLEIQANGFLYGMVRLLVGMLVEVGSGKRSLHNFTDIWQNQRRELVKYSAPAKGLCL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 LRVGYP 255 >gi|228473082|ref|ZP_04057839.1| tRNA pseudouridine synthase A [Capnocytophaga gingivalis ATCC 33624] gi|228275664|gb|EEK14441.1| tRNA pseudouridine synthase A [Capnocytophaga gingivalis ATCC 33624] Length = 240 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQRQ + S+Q +E+A+ ++ + + + GAGRTD+GVHA Sbjct: 1 MRYFIQLSYNGKNYCGWQRQPHSPSVQEELEEAMSMLLKKEIALVGAGRTDTGVHARDYY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +P L + LN++L I+I + V HARF A R+Y Y I + Sbjct: 61 AHFD-SDSSLPDRLVEKLNSFL--PKEIAIKQIFPVKNDAHARFDACSRTYQYFIALEKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ ++ I LD M A + L+ DF F ++ + + G Sbjct: 118 PFLYEQ--SYYIHFPLDLSLMNKAGEILLQHTDFQCFSKVNTDVKTYNCQLKEAYWRKEG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 NL+ R+ A FL +R+ VG++ +G G+ + DL++ L ++DR + G P L+ Sbjct: 176 NLLIFRITADRFLRNMVRAIVGTMIEIGRGRLSLEDLQQILLSKDRSKAGYSVPGHALFL 235 Query: 242 DSVEY 246 + + Y Sbjct: 236 EEIIY 240 >gi|225872353|ref|YP_002753808.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC 51196] gi|225793375|gb|ACO33465.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC 51196] Length = 254 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 124/254 (48%), Gaps = 11/254 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y GWQ Q +IQG + A+ +TGE V+ G+GRTD+GVHAL QV Sbjct: 3 LNWKLTLAYDGTDYRGWQVQPELPTIQGELAAAVERITGERVLPQGSGRTDAGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F L L +ALN L + I +L + + FHAR SA + Y YRI + Sbjct: 63 ASFVLKAPIPAENLHRALNRTLPAA--IRVLGAESMPEDFHARHSARSKWYEYRIFRGEV 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---------RSIHCQASSPIRTI 172 + + LD E MR AA VG HDF +F R S +RTI Sbjct: 121 CPPWTARYVYALHWPLDVEAMRRAAAAFVGEHDFRSFAASDPDVAARGSEDAEESHVRTI 180 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +L+ RV FLH +R+ VG++ VG ++ + D+ L +DR G Sbjct: 181 FASGWAEEDDLLIYRVHGNGFLHHMVRNLVGTMIGVGRRQFDAEDMPGLLALRDRSAAGA 240 Query: 233 LAPPEGLYFDSVEY 246 AP GL+ SV Y Sbjct: 241 TAPARGLFLYSVCY 254 >gi|166033550|ref|ZP_02236379.1| hypothetical protein DORFOR_03276 [Dorea formicigenerans ATCC 27755] gi|166026735|gb|EDR45492.1| hypothetical protein DORFOR_03276 [Dorea formicigenerans ATCC 27755] Length = 266 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 132/266 (49%), Gaps = 22/266 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +I+ + + I +TGE + + GA RTDSGVHAL Sbjct: 1 MRRIRIVVAYDGTNYCGWQIQPNGITIEEILNRQISKLTGEDIRIIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF-SAIRRSYLYRIITR 119 VA FD ALN K+ + I I+ V +H R+ + I ++Y Y I Sbjct: 61 VAVFDTESRIPGDRFAYALNQ--KMPEDIVIVRSDEVQIDWHPRYQNEISKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI------- 172 + L+ + + LD E MR A++++G HDF +F ++ A +RT+ Sbjct: 119 KVRNPLKNRYSTFVSFDLDVEKMRQGAKYILGEHDFASFCNVRTNAKDTVRTVHEITIKE 178 Query: 173 ---DHFDVNSFG----NL-----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 D F +++G NL I IRV FL+ +R G+L VG G + + Sbjct: 179 IPMDKFQASNWGQENSNLENEKEIVIRVTGNGFLYNMVRIIAGTLIRVGRGFYEPEKIRD 238 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 L+A++ G APP GL S++Y Sbjct: 239 ILEAKEHTSEGITAPPNGLVLVSIDY 264 >gi|327314538|ref|YP_004329975.1| tRNA pseudouridine synthase A [Prevotella denticola F0289] gi|326944120|gb|AEA20005.1| tRNA pseudouridine synthase A [Prevotella denticola F0289] Length = 255 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 128/268 (47%), Gaps = 37/268 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T + Sbjct: 63 VAHFDTAQPFDSEQLVYKMNRLLP--RDVSVSRIKAVSADLHARFSAVSRTYHYYIHTGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + I LD + M AA +L+G DF F C+A + ++T +F Sbjct: 121 QPFS--RRYSCEIHYPLDFDKMNEAASYLIGEKDFKCF----CKAGADVKT-------TF 167 Query: 181 GNLIEIR----------------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 NL E R + A FL +R+ VG+L VG G+ + D Sbjct: 168 CNLTEARWIPSGDGLSLSSGGTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADF 227 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + R + G P L+ ++Y Sbjct: 228 RQIVDGGTRSDAGESMPGNALFLWDIKY 255 >gi|330790485|ref|XP_003283327.1| hypothetical protein DICPUDRAFT_25596 [Dictyostelium purpureum] gi|325086752|gb|EGC40137.1| hypothetical protein DICPUDRAFT_25596 [Dictyostelium purpureum] Length = 323 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 134/289 (46%), Gaps = 47/289 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 RY + EY G + GWQR N +Q +E ++ + + + V G+ RTDSGV AL Sbjct: 4 RYKITYEYVGKYFTGWQRLTYDINPLPVQNVLENSLKHICNKEIKVFGSSRTDSGVSALG 63 Query: 60 QVAHFDL----VREWVPVILCKALNAYLKIS--------DTISILNLSIVDKQFHARFSA 107 +HFD+ R+ P+ L + I+ D + I+ IVD FH+RF A Sbjct: 64 NTSHFDIDQRTSRKGKPLPLLTTDELTMAINYNVGEQYLDRVRIIKTEIVDDNFHSRFHA 123 Query: 108 IRRSYLYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 R+YLY+I+ +Q PL L R I LD M+ AA+ LVGRHDF++FRS C Sbjct: 124 TSRTYLYKILANCGKKQTPLEL-LDRVLEISFILDVNKMKEAAEILVGRHDFSSFRSKDC 182 Query: 164 QASSPIRTIDHF--------------------------DVNSFGNLIEIRVVARSFLHTQ 197 +P+RTI++ +VN I I + A+SFLH Q Sbjct: 183 -TKNPVRTIEYIKIIELPTPEIIRYHPDFINCSKEINNNVNHGLQYIGIEIKAQSFLHNQ 241 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R +L VG G T L++ L+ +DR E L V Y Sbjct: 242 VRIMSSALIEVGKGTITKDQLKEILEKKDRLAAPSTIASEPLTLIKVSY 290 >gi|257088005|ref|ZP_05582366.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|256996035|gb|EEU83337.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] Length = 234 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 5/235 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGP 233 >gi|300870453|ref|YP_003785324.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli 95/1000] gi|300688152|gb|ADK30823.1| tRNA-pseudouridine synthase, TrmA [Brachyspira pilosicoli 95/1000] Length = 247 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 130/244 (53%), Gaps = 6/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+Y+G+ +FGWQ Q N ++QG I KA+ + + ++G GRTD+GVHAL Q Sbjct: 1 MTNIKITIQYDGTDFFGWQIQPNLRTVQGEIYKAVQKIYSKKSTIYGCGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + + VP+ + +ALN+ L I I+ +VD F+AR SA R Y+Y + Sbjct: 61 VANFRVEKMLVPIERVTRALNSAL--PKDIRIIKSEVVDDSFNARASATFREYIYVVQNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENM-RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + +W K++ E + A++LVG H+FT+F S + S R I+ Sbjct: 119 DISVPFYERYSWFYRKNIINEKLINEYAKYLVGEHNFTSFCSTEDENDSKFRYIERVRAI 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD-LEKALQAQDRKECGPLAPPE 237 + I + +FLH +R VG+L + G K + +E+ L+ +DR AP Sbjct: 179 RKKDTIYFIIRGNAFLHNMVRIIVGTL-VEGQRKNMPVNFIEEILKKEDRTLAFVTAPAH 237 Query: 238 GLYF 241 GLYF Sbjct: 238 GLYF 241 >gi|169824810|ref|YP_001692421.1| tRNA pseudouridine synthase A [Finegoldia magna ATCC 29328] gi|238687759|sp|B0S2E1|TRUA_FINM2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167831615|dbj|BAG08531.1| tRNA pseudouridine synthase A [Finegoldia magna ATCC 29328] Length = 244 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 14/247 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA QV +F Sbjct: 6 LTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQVCNFI 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR---QAP 122 + + +N + SD+I I+ +D FHARFSA ++Y Y + + + Sbjct: 66 VDTDISANQFLMGVNHF--TSDSIVIVKSEEMDLDFHARFSAKSKTYKYILCNKYYMEPW 123 Query: 123 LALEKG-RAWLIPKSL--DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 KG R + + L C +M L+G+HDFT+F + + +P+RTID + Sbjct: 124 FNDYKGHRKYYLDFDLLLKCRDM------LIGKHDFTSFVNDLEEDINPVRTIDEITIEK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GL Sbjct: 178 IDDDIVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGL 237 Query: 240 YFDSVEY 246 Y +EY Sbjct: 238 YLMDIEY 244 >gi|332881976|ref|ZP_08449617.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680102|gb|EGJ53058.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 250 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 119/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG Y GWQ Q ++QG ++ A+ + E + V GAGRTDSGVHAL+ Sbjct: 1 MRYFIEFSYNGKNYHGWQLQPKAITVQGVLQNALTTILREEISVIGAGRTDSGVHALQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE + L + LNA+L I++ ++ V HARF A++R+Y Y I ++ Sbjct: 61 AHFDTERE-LSDDLVRKLNAFLPYD--IAVHSICAVKPDAHARFDALKRTYQYHISIEKS 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +P ++D M AAQ L DF F H + I G Sbjct: 118 PFRYNYSMPLTLPLNIDV--MNEAAQILFDYTDFQCFSKTHTDVKTFNCKIYEAHWAVVG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG K + T E + ++ R + G P GL+ Sbjct: 176 GELVFTITADRFLRNMVRAIVGTLINVGLQKLSLTGFEDIIISKSRSKAGASVPACGLFL 235 Query: 242 DSVEY 246 V Y Sbjct: 236 TQVTY 240 >gi|51245176|ref|YP_065060.1| tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] gi|62901428|sp|Q6ANM1|TRUA1_DESPS RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|50876213|emb|CAG36053.1| related to tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] Length = 251 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 132/259 (50%), Gaps = 21/259 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M C++I ++G+ Y GWQ+Q + ++IQG IE + ++ + + +HGAGRTD+GVHA Sbjct: 1 MRNICLLIAFDGTDYSGWQKQHHANTIQGEIEARLKRLSVKEISLHGAGRTDAGVHADGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHF +ALN L I IL + + FHARF+A + Y YR+ T Sbjct: 61 TAHFHTDTRLTCNDFQRALNRML--PGAIRILQVREMADDFHARFAATGKEYHYRLFT-- 116 Query: 121 APLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ------ASSPIRTI 172 + + R +++ K +D E M+ Q ++G HDF++F + + +RTI Sbjct: 117 GGVIPPQKRLYMLHQEKPIDQEAMQKCLQIIIGTHDFSSFENTGSRDKTRTGGKGAVRTI 176 Query: 173 -----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + F+ +S+ + FL +R+ VGS+ VG GK + E+AL+ +DR Sbjct: 177 LEARYEQFEEDSW----HFVFIGDGFLRNMVRNIVGSILEVGRGKESVEWFEQALKEKDR 232 Query: 228 KECGPLAPPEGLYFDSVEY 246 GP AP GL V Y Sbjct: 233 NAAGPTAPAHGLKLFQVFY 251 >gi|258513673|ref|YP_003189895.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM 771] gi|257777378|gb|ACV61272.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM 771] Length = 250 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 5/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ Y G+Q QK +IQG +++ + + E + V AGRTDSGVHA QV + Sbjct: 9 VILAYDGTNYHGFQIQKGKRLPTIQGVLQRELSHLAKETITVTTAGRTDSGVHARGQVFN 68 Query: 64 FDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +PV + ALN+ L I L+ VD FHAR+SA+ ++Y Y I Q Sbjct: 69 FFTGNWQIPVDRVIYALNSVL--PPDIRALSAEEVDLGFHARYSALAKTYCYYISRDQIV 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + ++ LD ++MR A H+ G HDF +F + S IRTI D+ Sbjct: 127 SPFTRLYSYQYNYPLDLDDMRQAVLHITGEHDFKSFMASGSLVKSTIRTIYQIDLIEKDK 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ FL+ +R G+L VG GK +++E L+ DRK G P GL+ + Sbjct: 187 MLIFTFRGNGFLYHMVRIITGTLLQVGTGKIHYSEIETILKKCDRKSAGATVPALGLFLE 246 Query: 243 SVEY 246 VEY Sbjct: 247 RVEY 250 >gi|288817539|ref|YP_003431886.1| pseudouridylate synthase [Hydrogenobacter thermophilus TK-6] gi|288786938|dbj|BAI68685.1| pseudouridylate synthase [Hydrogenobacter thermophilus TK-6] gi|308751142|gb|ADO44625.1| tRNA pseudouridine synthase A [Hydrogenobacter thermophilus TK-6] Length = 241 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 5/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +++ Y G+ + GWQ Q N ++QG I++++ V E + + G RTD+GVHA Sbjct: 1 MPNYVLLLSYVGTNFHGWQVQPNLRTVQGVIKESLEKVFREDIKLVGCCRTDAGVHAKEY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +E P L KALN+ L + + I + V + F+AR+S + Y+YR++ Sbjct: 61 VANFYAKKEMEPYKLLKALNSLL--PEDVGIKRV-WVQEGFNARYSVRGKVYVYRVLNSF 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + AW +P+ LD M+ A + L GR DF+ F + + + ++ ++ Sbjct: 118 SRDAFIEPFAWRVPQKLDLSKMQKACELLAGRRDFSAFAKKEEEDKNTVIDLEEVRLSKV 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LIEI ARSFL +R VG + +G G+ + LE+ L +RK C A +GL Sbjct: 178 EDLIEISFRARSFLRYMVRRMVGCMVQIGLGRINLSHLEEYL--SNRKTCPYTAKAKGLT 235 Query: 241 FDSV 244 + V Sbjct: 236 LEKV 239 >gi|255655803|ref|ZP_05401212.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-23m63] gi|296450959|ref|ZP_06892706.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296879075|ref|ZP_06903071.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] gi|296260177|gb|EFH07025.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296429948|gb|EFH15799.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] Length = 245 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MI+ Y+GS Y G+Q+ N +IQ +E + +T E V + G+GRTD G HA QV +F Sbjct: 6 MIVAYDGSRYKGYQKLGDNNMTIQEKLENVLSKMTNETVEIIGSGRTDMGAHARGQVVNF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + K L YL + I + + VD++FH+R++ ++Y+YRI + Sbjct: 66 RTNCMDSLDKIQKYLYEYL--PEDIVVKAVEEVDERFHSRYNVKSKTYMYRIDNNKYHNP 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + A + K LD + MR A+++LVG HDFT+F S + S +R I ++ N+I Sbjct: 124 FIRKYATHVSKKLDLDRMRKASEYLVGEHDFTSFASSKSKKKSNVREIYSINIKEDDNII 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 EI V FL+ +R VG+L VG + D++ L+++DR + AP +GL V Sbjct: 184 EIYVEGNGFLYNMVRIIVGALIDVGLKRRAPQDIKYMLESRDRCQSSDTAPAKGLCLWKV 243 Query: 245 EY 246 Y Sbjct: 244 RY 245 >gi|254446439|ref|ZP_05059915.1| tRNA pseudouridine synthase A [Verrucomicrobiae bacterium DG1235] gi|198260747|gb|EDY85055.1| tRNA pseudouridine synthase A [Verrucomicrobiae bacterium DG1235] Length = 243 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 131/248 (52%), Gaps = 8/248 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ Y+G+ Y GWQ+Q S+Q IE+ + + E V +HG+GRTD+GVHAL QV Sbjct: 1 MRWKCSCSYDGTNYAGWQKQSGQISVQQVIEEVLEQLLKEKVAIHGSGRTDAGVHALEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD L KAL++ K+ I + + + V ++FHARFSA+ + Y YR+ +A Sbjct: 61 FHFDYDWRHGGESLVKALHS--KLPKEIRVESATEVGEEFHARFSAVSKRYQYRLALGEA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIHCQASSPIRTIDHFDVN 178 + W + + LD ++ A VG HDF F R I +++ R + V+ Sbjct: 119 N-PFQWAYCWPVSRKLDLNLVKEAMDRFVGTHDFGAFAANRGIEYESTE--RKMLATGVS 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + A F++ +RS VG++ VG G+ +++E+ L++ R AP +G Sbjct: 176 QDTEYVGLSFQADGFMYKMVRSLVGAVVNVGLGRMQVSEIERLLESAVRSPMVQAAPAKG 235 Query: 239 LYFDSVEY 246 L+ + V Y Sbjct: 236 LFLEKVFY 243 >gi|15836112|ref|NP_300636.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae J138] gi|16752458|ref|NP_444720.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae AR39] gi|12644497|sp|Q9Z7X4|TRUA_CHLPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|7189101|gb|AAF38045.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae AR39] gi|8978952|dbj|BAA98787.1| pseudouridylate synthase I [Chlamydophila pneumoniae J138] Length = 267 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G+ Y GWQ+Q N SIQ IE ++ +T + +GRTD+GVHA Q Sbjct: 1 MTKVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTPLIASGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF + + KALNA L I I ++++ D FHAR+ I + Y Y + Sbjct: 61 VAHFRAPDHPLFANANLTKKALNAILP--KDIVIRDVALFDDNFHARYLTIAKEYRYSLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ + E M+ A L+G HDF +F + +S +RTI D+ Sbjct: 119 RLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYNSTVRTIYTLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + I FL+ +R+ VG+L VG G + L L+ ++R+E AP Sbjct: 179 VDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPAY 238 Query: 238 GLYFDSVEYS 247 GL V YS Sbjct: 239 GLSLHHVCYS 248 >gi|325269743|ref|ZP_08136354.1| tRNA pseudouridine synthase A [Prevotella multiformis DSM 16608] gi|324987944|gb|EGC19916.1| tRNA pseudouridine synthase A [Prevotella multiformis DSM 16608] Length = 255 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 126/268 (47%), Gaps = 37/268 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T + Sbjct: 63 VAHFDTAQPFDSGQLVYKMNRLLP--RDVSVSRIEAVSADLHARFSAVSRTYHYYIHTGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + P LD + M AA +L+G DF F C+A + ++T +F Sbjct: 121 QPFSHRYSCEIHYP--LDFDKMNEAASYLIGEKDFKCF----CKAGADVKT-------TF 167 Query: 181 GNLIEIR----------------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 NL E R + A FL +R+ VG+L VG G+ + D Sbjct: 168 CNLTEARWIPFGDGLSLSSGSTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADF 227 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + R + G P L+ ++Y Sbjct: 228 RQIVDGGTRSDAGESMPGNALFLWDIKY 255 >gi|257453277|ref|ZP_05618576.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|317059811|ref|ZP_07924296.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|313685487|gb|EFS22322.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] Length = 245 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 6/240 (2%) Query: 9 EYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 +Y+GS + G+QRQ ++QG IEK +F + E + + +GRTD GVHA+ QV++F Sbjct: 9 QYDGSSFMGFQRQPEKRTVQGEIEKCLFRILKEKIDLTSSGRTDRGVHAMHQVSNFFTA- 67 Query: 69 EWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 V + L K A + + + I +L L K FHARFSA RSY YRI ++P E+ Sbjct: 68 --VNIPLDKLFYALSRCLPEDILLLELEEARKDFHARFSAKTRSYCYRITWEKSP--FER 123 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + K +D ++ + +G+H+F FR ++PIR I V ++I Sbjct: 124 RYKTYVKKKIDSQSFFKILEIFMGKHNFQNFRLQDDAFANPIREIYSIQVKEVDEGMDIY 183 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + A +FL +QIR +G+ V K S +EK L+ D++ LA P GLY ++Y Sbjct: 184 IEANAFLKSQIRIMLGTAFQVYFQKVESNRIEKMLKEPDKEFPKYLADPNGLYLYHIKYD 243 >gi|260171626|ref|ZP_05758038.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] Length = 267 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V H RF A R+Y Y + T + Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLLPPD--ISIYRVCRVRPDAHVRFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + L+ E M AA L +DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRLYNQLNYERMNEAAHILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|172038954|ref|YP_001805455.1| tRNA pseudouridine synthase A [Cyanothece sp. ATCC 51142] gi|171700408|gb|ACB53389.1| tRNA pseudouridine synthase [Cyanothece sp. ATCC 51142] Length = 286 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 116/246 (47%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G + GWQRQ ++Q IE +I V G V +HGAGRTD+GVHA QVA Sbjct: 12 RVALVIQYQGGRFHGWQRQPTQRTVQEDIETSIAQVLGYHVPIHGAGRTDAGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD V P LN ++ D I + + V +HARFSA+ R Y Y T + P Sbjct: 72 HFDDVSPIPPQRWADILNQ--RLPDDILVRGSAEVPLTWHARFSALWRRYRYTFYTDKCP 129 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W + L+ E M A L+GRH FR + + G Sbjct: 130 NLFVSPFSWHYYYEPLEVELMTKALNPLLGRHHLAAFRRAGSKRHHSWVEVQETQCYRQG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R VG L VG GK + + + Q Q R++ AP +GL Sbjct: 190 PFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLANFTEIWQHQQREQVKYSAPAKGLCL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 LRVGYP 255 >gi|313157719|gb|EFR57130.1| tRNA pseudouridine synthase A [Alistipes sp. HGB5] Length = 257 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 126/247 (51%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQRQ + S+Q ++E+A+ + E + V GAGRTD+GV+A V Sbjct: 4 MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLLREKIEVTGAGRTDTGVNASYYV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD E VP + I++ +++ V HARF+A R Y Y I R+ Sbjct: 64 AHFD-CEEPVPDPAQVVYKLNFLLPGDIAVGSMTPVGADAHARFAAREREYRYYIEPRKN 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDVNS 179 P + + +P LD E M AA L+ DFT+F ++ + I I H + + Sbjct: 123 PFTRDATWQYYVP--LDMERMNEAAASLLEYDDFTSFAKLNSNNKTNICRIMHAAWTADE 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L + A FL +RS VG+L VG G++T + + ++D AP +GL Sbjct: 181 RGVLC-FTIRADRFLRNMVRSLVGTLVDVGRGRYTPDGFREIVGSRDLSRSSGGAPAQGL 239 Query: 240 YFDSVEY 246 + V Y Sbjct: 240 FLSDVVY 246 >gi|291515704|emb|CBK64914.1| pseudouridylate synthase I [Alistipes shahii WAL 8301] Length = 259 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 128/253 (50%), Gaps = 18/253 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQRQ + S+Q ++E+A+ + E V + GAGRTD+GV+A V Sbjct: 1 MRYFLELRYNGAAYCGWQRQPDQPSVQQTLERALATLLREPVALTGAGRTDTGVNAAYYV 60 Query: 62 AHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD R P LN +L D I++ +++ V + HARF A R Y Y I R+ Sbjct: 61 AHFDCERPVADPAQTVYKLN-FLLPGD-IAVGSMTPVAEDAHARFHAREREYRYFIEPRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-------CQASSPIRTID 173 P + + +P LD M AA L DFT+F ++ C+ + TID Sbjct: 119 NPFTRHETWQYYVP--LDVGRMNEAAAMLTAYDDFTSFAKLNSNNKTNICRVKEAVWTID 176 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 S G + + A FL +RS VG+L VG G++T ++++D Sbjct: 177 -----SRGTMC-FTIRADRFLRNMVRSLVGTLVDVGRGRYTPDGFRSIVESRDLSRSSAG 230 Query: 234 APPEGLYFDSVEY 246 AP +GL+ V Y Sbjct: 231 APAQGLFLSDVVY 243 >gi|255083272|ref|XP_002504622.1| predicted protein [Micromonas sp. RCC299] gi|226519890|gb|ACO65880.1| predicted protein [Micromonas sp. RCC299] Length = 253 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 131/259 (50%), Gaps = 26/259 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQ 60 Y + + Y+G Y G+Q Q G ++QG +E+A+ +TG E + + +GRTD+GVHA Q Sbjct: 3 YALKLAYDGEAYLGFQYQPKGKTVQGEVERALTKLTGHDREFLGMQASGRTDTGVHARGQ 62 Query: 61 VAHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + HF +E V + K+LN + + + + FHARF A+R++Y Y + Sbjct: 63 ILHF-YTKEPVSDLERFHKSLNGIM--PKDVRCVEVMRPHPAFHARFHAVRKTYHYFLDP 119 Query: 119 RQA--PL----ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS---SPI 169 R P AL G W P E +R AA VG HDFT+F + + SP Sbjct: 120 RLVLDPFVRRHALHCG--WKPPS---VERLREAAAVFVGTHDFTSFSNKSRDKTLVRSPT 174 Query: 170 RTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG---DGKWTSTDLEKALQAQ 225 RTI FD V LI + V FL+ +R+ VG+L L DGK+T+ DL L+ + Sbjct: 175 RTIYRFDVVEQPDGLIRLEVEGNGFLYRMVRNMVGALMLAATGEDGKFTAEDLRDMLEGK 234 Query: 226 DRKECGPLAPPEGLYFDSV 244 DR APP GL+ V Sbjct: 235 DRGVAPMGAPPHGLFLHEV 253 >gi|257467128|ref|ZP_05631439.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|315918259|ref|ZP_07914499.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|313692134|gb|EFS28969.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] Length = 245 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 6/240 (2%) Query: 9 EYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 +Y+GS + G+QRQ ++QG IEK +F + E + + +GRTD GVHA+ QV++F Sbjct: 9 QYDGSSFMGFQRQPEKRTVQGEIEKCLFRILKEKIDLTSSGRTDRGVHAMHQVSNFFTA- 67 Query: 69 EWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 V + L K A + + I +L L K FHARFSA RSY YRI +++P E+ Sbjct: 68 --VNIPLDKLFYALSHCLPEDILLLELEEARKDFHARFSAKTRSYCYRITWKKSP--FER 123 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + K +D ++ + +G+H+F FR ++PIR I V ++I Sbjct: 124 RYKTYVKKKIDSQSFFKILEIFMGKHNFQNFRLQDDAFANPIREIYSIQVKEVDEGMDIY 183 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + A +FL +QIR +G+ V K S +EK L+ D++ LA P GLY ++Y Sbjct: 184 IEANAFLKSQIRIMLGTAFQVYFQKVESNRIEKMLKEPDKEFPKYLADPNGLYLYHIKYD 243 >gi|258540648|ref|YP_003175147.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705] gi|257152324|emb|CAR91296.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705] Length = 247 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSLMPLD--IEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPATNELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|325856892|ref|ZP_08172390.1| tRNA pseudouridine synthase A [Prevotella denticola CRIS 18C-A] gi|325483265|gb|EGC86242.1| tRNA pseudouridine synthase A [Prevotella denticola CRIS 18C-A] Length = 255 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 127/268 (47%), Gaps = 37/268 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E ++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T + Sbjct: 63 VAHFDTAQPFDSEQLVYKMNRLLP--RDVSVSRIEAVSADLHARFSAVSRTYHYYIHTGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + I LD + M AA +L+G DF F C+A + ++T +F Sbjct: 121 QPFS--RRYSCEIHYPLDFDKMNEAASYLIGEKDFKCF----CKAGADVKT-------TF 167 Query: 181 GNLIEIR----------------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 NL E R + A FL +R+ VG+L VG G+ + D Sbjct: 168 CNLTEARWIPFGDGLSLSSGGTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADF 227 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + R + G P L+ ++Y Sbjct: 228 RQIVDGGTRSDAGESMPGNALFLWDIKY 255 >gi|134298133|ref|YP_001111629.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1] gi|172044244|sp|A4J151|TRUA_DESRM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134050833|gb|ABO48804.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1] Length = 247 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 5/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y+G+ Y G+Q Q+ ++IQ ++EKA+ + + V GAGRTD+GVHA QV + Sbjct: 6 LTLAYDGTNYHGFQEQRGTGLATIQEALEKALSTIAQTPIQVIGAGRTDAGVHAQGQVVN 65 Query: 64 FDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + VP ALN L I ++ V FHARFSA+ ++Y Y I + Sbjct: 66 FRSEKWPVPAEKAPLALNVLL--PGDIKVVKAEEVPMDFHARFSAVAKTYRYSIYHHRVM 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + P+ LD M+ A +L+G +DF +F++ IRTI D+ Sbjct: 124 SPFHRYYCYHEPRRLDVNAMQEGAAYLLGTYDFKSFQAQGTPVKDTIRTIYRADIIEDAP 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I + + FL+ +R G+L +G GK D+ K +++++R G APP+GL Sbjct: 184 VINLYLRGNGFLYNMVRIITGTLLNIGFGKIKPEDMVKIIESKNRTLAGTTAPPQGLCLM 243 Query: 243 SVEY 246 VEY Sbjct: 244 EVEY 247 >gi|15843050|ref|NP_338087.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551] gi|148824665|ref|YP_001289419.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis F11] gi|161352460|ref|NP_217972.2| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Rv] gi|161511525|ref|NP_857124.2| tRNA pseudouridine synthase A [Mycobacterium bovis AF2122/97] gi|253800500|ref|YP_003033501.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 1435] gi|254234047|ref|ZP_04927372.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C] gi|254366056|ref|ZP_04982101.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str. Haarlem] gi|289555726|ref|ZP_06444936.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 605] gi|289747288|ref|ZP_06506666.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis 02_1987] gi|298526939|ref|ZP_07014348.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|308377357|ref|ZP_07441941.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu008] gi|308378330|ref|ZP_07482228.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu009] gi|308379519|ref|ZP_07668975.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu010] gi|54039781|sp|P65847|TRUA_MYCBO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042086|sp|P65846|TRUA_MYCTU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13883394|gb|AAK47901.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551] gi|124599576|gb|EAY58680.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C] gi|134151569|gb|EBA43614.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str. Haarlem] gi|148723192|gb|ABR07817.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis F11] gi|253322003|gb|ACT26606.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 1435] gi|289440358|gb|EFD22851.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 605] gi|289687816|gb|EFD55304.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis 02_1987] gi|298496733|gb|EFI32027.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|308348190|gb|EFP37041.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu008] gi|308352914|gb|EFP41765.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu009] gi|308356757|gb|EFP45608.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu010] gi|328460231|gb|AEB05654.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 4207] Length = 297 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 22/263 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ + GW Q ++ G ++ A+ + V + AGRTD+GVHA Q Sbjct: 21 VVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQ 80 Query: 61 VAHFDLVREWVP--------------VILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 VAH D+ + +P + L + L +L + IL+++ F ARFS Sbjct: 81 VAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPAD--VRILDITRAPAGFDARFS 138 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A+RR Y+YR+ T AP +E +A I P+ LD + M A++ L+G HDF F H Sbjct: 139 ALRRHYVYRLST--APYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAF-CRHR 195 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + ++ IR + D + G L+ V A +F + +RS VG+L VG+ + +T + L Sbjct: 196 EGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLT 255 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A R +AP GL V+Y Sbjct: 256 ATGRSSDFAVAPAHGLTLIQVDY 278 >gi|308371354|ref|ZP_07424662.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu003] gi|308372553|ref|ZP_07667408.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu004] gi|308373747|ref|ZP_07667643.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu005] gi|308374881|ref|ZP_07667891.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu006] gi|308380705|ref|ZP_07669261.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu011] gi|308406162|ref|ZP_07669527.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu012] gi|308329092|gb|EFP17943.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu003] gi|308332900|gb|EFP21751.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu004] gi|308336560|gb|EFP25411.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu005] gi|308340435|gb|EFP29286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu006] gi|308360702|gb|EFP49553.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu011] gi|308364317|gb|EFP53168.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu012] gi|323717939|gb|EGB27128.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CDC1551A] Length = 303 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 22/263 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ + GW Q ++ G ++ A+ + V + AGRTD+GVHA Q Sbjct: 27 VVRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQ 86 Query: 61 VAHFDLVREWVP--------------VILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 VAH D+ + +P + L + L +L + IL+++ F ARFS Sbjct: 87 VAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPAD--VRILDITRAPAGFDARFS 144 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A+RR Y+YR+ T AP +E +A I P+ LD + M A++ L+G HDF F H Sbjct: 145 ALRRHYVYRLST--APYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAF-CRHR 201 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + ++ IR + D + G L+ V A +F + +RS VG+L VG+ + +T + L Sbjct: 202 EGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLT 261 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A R +AP GL V+Y Sbjct: 262 ATGRSSDFAVAPAHGLTLIQVDY 284 >gi|304440310|ref|ZP_07400199.1| tRNA pseudouridine synthase A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371062|gb|EFM24679.1| tRNA pseudouridine synthase A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 247 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ ++G+Q+Q G +I+ + KA+ V + +GRTDSGVHA Q A+F Sbjct: 7 ITYDGTNFYGFQKQDRGRTIEKVLTKAVENTVKHPVKLFYSGRTDSGVHAFGQYANFYTE 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L K +N +L IS++ VD FH+R+SA + Y Y I + AL + Sbjct: 67 STIDIGNLPKVINYHLPTD--ISVVEAKYVDDNFHSRYSAKGKFYRYIIYNNKYRNALFE 124 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 RAW P +D E + + +LVG HDF +F + IR I +VN G++I I Sbjct: 125 NRAWQYPHKIDMEILEKSLSYLVGEHDFKSFMGRYATVKDTIRIIHKIEVNKVGDVINID 184 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +SFL +R VG+ + + ++AL ++R G AP GLY V + Sbjct: 185 FYGKSFLKNMVRIIVGTSVQISSKNKSPEITKEALVRKERISAGMTAPACGLYLMDVYF 243 >gi|126699393|ref|YP_001088290.1| tRNA pseudouridine synthase A [Clostridium difficile 630] gi|254975421|ref|ZP_05271893.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-66c26] gi|255092808|ref|ZP_05322286.1| tRNA pseudouridine synthase A [Clostridium difficile CIP 107932] gi|255100921|ref|ZP_05329898.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-63q42] gi|255306811|ref|ZP_05350982.1| tRNA pseudouridine synthase A [Clostridium difficile ATCC 43255] gi|255314550|ref|ZP_05356133.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-76w55] gi|255517225|ref|ZP_05384901.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-97b34] gi|255650331|ref|ZP_05397233.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-37x79] gi|260683444|ref|YP_003214729.1| tRNA pseudouridine synthase A [Clostridium difficile CD196] gi|260687040|ref|YP_003218173.1| tRNA pseudouridine synthase A [Clostridium difficile R20291] gi|306520297|ref|ZP_07406644.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-32g58] gi|115250830|emb|CAJ68654.1| Pseudouridylate synthase (tRNA pseudouridine synthase A) [Clostridium difficile] gi|260209607|emb|CBA63265.1| tRNA pseudouridine synthase 2 [Clostridium difficile CD196] gi|260213056|emb|CBE04418.1| tRNA pseudouridine synthase 2 [Clostridium difficile R20291] Length = 245 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 3/235 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MI+ Y+GS Y G+Q+ N +IQ +E + +T E V + G+GRTD G HA QV +F Sbjct: 6 MIVAYDGSRYKGYQKLGDNNMTIQEKLENVLSKMTNETVEIIGSGRTDMGAHARGQVVNF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + K L YL + I + + VD++FH+R++ ++Y+Y+I + Sbjct: 66 RTNCMDSLDKIQKYLYEYL--PEDIVVKTVEEVDERFHSRYNVKSKTYMYKIDNNKYHNP 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + A + K LD + MR A+++LVG HDFT+F S + S +R I ++ N+I Sbjct: 124 FIRKYATHVSKKLDLDRMRKASEYLVGEHDFTSFASSKSKKKSNVREIYSINIKEDDNVI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 EI V FL+ +R VG+L VG + D++ L+++DR + AP +GL Sbjct: 184 EIYVEGNGFLYNMVRIIVGALIDVGLKRRAPQDIKYMLESKDRCQSSDTAPAKGL 238 >gi|260072704|gb|ACX30601.1| pseudouridylate synthase [uncultured SUP05 cluster bacterium] Length = 218 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 13/220 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E+A+ V V V +GRTD+GVHAL Q Sbjct: 1 MKLALGVEYLGTNFHGWQLQKSGIRTVQQVVEQALSSVADHPVRVFCSGRTDAGVHALEQ 60 Query: 61 VAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HF+ + WV L + + ++ V+ FHARF A R Y Y+ Sbjct: 61 VIHFETTAKREDKAWV-------LGGNVNLPFDVNFKWAKQVNDDFHARFDAHARQYHYK 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I A++ ++LD + M AA+ L+G HDF++FR CQA SPI+T++ Sbjct: 114 IHNTPVRSAVKHAYTLWESRTLDIKLMNQAAECLIGEHDFSSFRGSLCQAKSPIKTVEFI 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + GN I + + A +FLH +R+ VG+L VG G+ S Sbjct: 174 RLTQSGNGILLDIKANAFLHHMVRNIVGTLIKVGKGEQDS 213 >gi|325279339|ref|YP_004251881.1| tRNA pseudouridine synthase A [Odoribacter splanchnicus DSM 20712] gi|324311148|gb|ADY31701.1| tRNA pseudouridine synthase A [Odoribacter splanchnicus DSM 20712] Length = 245 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 123/248 (49%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY + + YNGS Y GWQ Q SS+Q I +A+ + + + V GAGRTD+GVHA Sbjct: 1 MVRYFIELAYNGSRYHGWQIQPGASSVQEEINRALSTLLRQDIYVVGAGRTDTGVHASFF 60 Query: 61 VAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD+ E P + LN L I+I + V HARFSAI R+Y Y I Sbjct: 61 VAHFDIECELPEPQQVVYKLNGLL--DKDIAIYKIYRVPMDKHARFSAISRTYKYYIDKT 118 Query: 120 QAPLALEKG-RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P +A+ +P D + M A + L DFT+F +H + I Sbjct: 119 KDPFTYPFAWKAYPLP---DIQTMNEACRVLFDYTDFTSFSKLHTDVKTNNCIIYEAQWE 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + V A FL +R+ VG+L VG GK T D+ K +++++R G P + Sbjct: 176 ETDKQLIFTVKANRFLRNMVRAIVGTLIDVGRGKLTPEDVRKIIESKNRCNAGTSVPAQA 235 Query: 239 LYFDSVEY 246 L+ +EY Sbjct: 236 LFLCHIEY 243 >gi|111114834|ref|YP_709452.1| tRNA pseudouridine synthase A [Borrelia afzelii PKo] gi|216264050|ref|ZP_03436044.1| tRNA pseudouridine synthase A [Borrelia afzelii ACA-1] gi|122956439|sp|Q0SPF2|TRUA_BORAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110890108|gb|ABH01276.1| pseudouridylate synthase I [Borrelia afzelii PKo] gi|215980094|gb|EEC20916.1| tRNA pseudouridine synthase A [Borrelia afzelii ACA-1] Length = 246 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 122/239 (51%), Gaps = 1/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS Y G+Q Q +IQG IEKA+ + + + +H +GRTD GVHA RQ+ FD+ Sbjct: 8 IAYDGSMYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQIITFDIN 67 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L KALNA L + I IL L V FH RF+A +R Y Y I+ E Sbjct: 68 INIQLNNLKKALNAIL-LKPGIKILKLKHVKNSFHPRFNAQKRKYSYCILNSDNYYPWES 126 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +A+ + K L+ N+ A+ L+G HDFTTF I ++ S R I G I Sbjct: 127 YQAYYVNKKLNINNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHSAKFKKKGKYIIFE 186 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ SFL +RS +G++ + + + E L++++R AP L+ D V Y Sbjct: 187 IIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLDKVYY 245 >gi|154507834|ref|ZP_02043476.1| hypothetical protein ACTODO_00316 [Actinomyces odontolyticus ATCC 17982] gi|153797468|gb|EDN79888.1| hypothetical protein ACTODO_00316 [Actinomyces odontolyticus ATCC 17982] Length = 302 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 37/277 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW Q ++QG +E A+ + + E VV AGRTD+GVHA QV Sbjct: 5 RLRLDLGYDGTDFRGWAAQPGLRTVQGEVEAALAMASREDVVTTVAGRTDAGVHARHQVC 64 Query: 63 HFDLVR---------------EWVPVILCKALNAYL----------------KISDTISI 91 H D+ + V + + LN L + + + I Sbjct: 65 HADISEAAWARLSPRGGESNEQAVASAIVRRLNKILSGRYGERARGRDLAAARGTCDVRI 124 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + ++VD F ARFSA+ RSY YR+ R PL R W + + LD M A L+G Sbjct: 125 YSAAVVDPSFDARFSALGRSYAYRVSDRPEPLG-RWDRLW-VEEPLDEAAMNEAGAALLG 182 Query: 152 RHDFTTFRSIHCQASSPIRTIDHF--DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 HDF F + ++ IRT+ + ++ G L+ RV A +F H+ +RS VG+L LVG Sbjct: 183 EHDFLGFCRPR-EGATTIRTLRTLLAERDAEGTLV-FRVEADAFCHSMVRSLVGALLLVG 240 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G T + L+A+ R E P+AP GL + VEY Sbjct: 241 SGARDVTYPVQILRARSRSEAAPIAPAHGLTLEGVEY 277 >gi|83816613|ref|YP_444802.1| tRNA pseudouridine synthase A [Salinibacter ruber DSM 13855] gi|123726203|sp|Q2S4S9|TRUA_SALRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83758007|gb|ABC46120.1| tRNA pseudouridine synthase A [Salinibacter ruber DSM 13855] Length = 265 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 131/250 (52%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQ Q ++QG++E+A+ V G V G+GRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTDFHGWQIQPTVPTVQGALEEAVDTVVGTACRVTGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL P L +LN D +++ + FHAR+ A RR Y Y + T+ Sbjct: 61 VAHVDLPETRDPYRLRGSLNGL--TPDAVAVRRVERAPDDFHARYDARRRRYHYHLHTQ- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF---DV 177 P AL + + D +R A L+GRH+F++F + + + T+ H D Sbjct: 118 -PCALGRRARTPVRPVPDFGRIRAATPDLLGRHNFSSFCLTQSETENRVCTLTHLRWVDE 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + VV FLH +R+ VG+L +G K + L L A+DR+ GP PPE Sbjct: 177 ARRG-CWRVEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPE 235 Query: 238 GLYFDSVEYS 247 GL ++V Y Sbjct: 236 GLVLEAVRYE 245 >gi|224079884|ref|XP_002194368.1| PREDICTED: similar to MGC80334 protein [Taeniopygia guttata] Length = 427 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 132/264 (50%), Gaps = 30/264 (11%) Query: 12 GSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE- 69 G G + + +Q +EKA L + H + RTD+GVHAL AH D+ R Sbjct: 138 GGGVMETKSDQALVGVQNYLEKAAERLKPSAPIKFHISSRTDAGVHALANAAHLDIQRPP 197 Query: 70 ----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-----RQ 120 + L + LN +L+ + I IL+ V FHARF A+ R+Y+YR++ Q Sbjct: 198 GKAPFSGQQLVQGLNHHLR-PEPIRILSAQRVSSTFHARFCALSRTYIYRLLLGCAHHSQ 256 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDV 177 P+ E+ W LD MR AAQ L+G HDF++FRS+H +A+ SP+RT+ + Sbjct: 257 IPV-FEQDLCWAPAGGPLDVAAMREAAQFLLGTHDFSSFRSLHAEAAAQSPVRTLQQLQL 315 Query: 178 NSFGNLI------------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + E++V +RSFL+ Q+R VG+L VG G+ L + L+ + Sbjct: 316 QPAPGFLQQHYLHSGLEFWEVKVKSRSFLYRQVRRMVGALVAVGQGRLAPVQLRELLELR 375 Query: 226 DRKECGP--LAPPEGLYFDSVEYS 247 D P +AP GL+ VEYS Sbjct: 376 DPHAFPPHAMAPAAGLFLQRVEYS 399 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 15/120 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +Y G+ Y + + + + E+ L + H + RTD+GVHAL A Sbjct: 7 RYLVFFQYLGTRY------RIIAELTRAAER---LKPSAPIKFHISSRTDAGVHALANAA 57 Query: 63 HFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 H D+ R + L + LN +L+ + I IL+ V FHARF A+ R+Y+YR++ Sbjct: 58 HLDIQRPPGKAPFSSQQLVQGLNHHLR-PEPIRILSAQRVSSTFHARFCALSRTYIYRLL 116 >gi|270294324|ref|ZP_06200526.1| tRNA pseudouridine synthase A [Bacteroides sp. D20] gi|270275791|gb|EFA21651.1| tRNA pseudouridine synthase A [Bacteroides sp. D20] Length = 250 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 120/248 (48%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSDSPLDTVFMTDKLNRLLPPD--ISVYRLRAVKPDAHARFDATARMYKYYVTTAK 118 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +P + + R + P D E M AAQ L DFT+F +H + I H Sbjct: 119 SPFNRQYRCRLFQTP---DFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCKIMHAAWTR 175 Query: 180 FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++ + + A FL +R+ VG+L VG GK + + ++ +DR + G P Sbjct: 176 VDDVTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVEGFRRVIEQKDRCQAGTSVPGNA 235 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 236 LFLVDVAY 243 >gi|212704912|ref|ZP_03313040.1| hypothetical protein DESPIG_02979 [Desulfovibrio piger ATCC 29098] gi|212671683|gb|EEB32166.1| hypothetical protein DESPIG_02979 [Desulfovibrio piger ATCC 29098] Length = 264 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 126/270 (46%), Gaps = 38/270 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R +++ Y+GS Y GWQ Q ++Q ++E A+ + G V V G+GRTD+GVHA Sbjct: 8 MRLRLLLAYDGSRYCGWQIQDIPTPPPTVQAAVEAAVGRIAGRPVRVFGSGRTDAGVHAH 67 Query: 59 RQVAHFDLVR----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QVAH D+ R +W ALNA L + +L FHAR SA+R++Y+Y Sbjct: 68 GQVAHCDVPRRPGLDWR-----HALNALLPAD--VRVLYWQEAAPDFHARISALRKTYVY 120 Query: 115 R-------IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 + R AP G LD E MR A L+GRHDF +F++ + S Sbjct: 121 DFWQEKGFVPPRLAPFVWRSG-------PLDAEAMRAALPFLLGRHDFASFQNAGTEMES 173 Query: 168 PIRTIDHFDVNSFGNL---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 +R + + + + + V A FL +R+ G L G K + Sbjct: 174 TVRELQAATLTELPPVEFMPPCLPCLRLTVTANGFLKQMVRNMAGLLAAYGRHKLRPDQI 233 Query: 219 EKALQAQDRKEC-GPLAPPEGLYFDSVEYS 247 L+A DR+ P APP+GL VEY Sbjct: 234 PAILEAADRRALPSPTAPPQGLALAHVEYP 263 >gi|53712218|ref|YP_098210.1| tRNA pseudouridine synthase A [Bacteroides fragilis YCH46] gi|253563743|ref|ZP_04841200.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_2_5] gi|62901264|sp|Q64XV0|TRUA_BACFR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52215083|dbj|BAD47676.1| tRNA pseudouridine synthase A [Bacteroides fragilis YCH46] gi|251947519|gb|EES87801.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_2_5] Length = 252 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 122/246 (49%), Gaps = 6/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA VA Sbjct: 5 RYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMVA 64 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + V + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 65 HFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITTVKF 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + I LD + M AA L DFT+F +H + I I H + Sbjct: 123 P--FNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQED 180 Query: 182 NLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L+ Sbjct: 181 EYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVVDFRKIIEQQNRCKAGTSAPGNALF 240 Query: 241 FDSVEY 246 +VEY Sbjct: 241 LVNVEY 246 >gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Bacillus halodurans C-125] gi|8134764|sp|Q9Z9J0|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4512436|dbj|BAA75303.1| truA homologue (identity of 62% to B. subtilis ) [Bacillus halodurans] gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Bacillus halodurans C-125] Length = 263 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 125/245 (51%), Gaps = 13/245 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R + + Y+G+ + G+Q Q N ++QG +E + + G + V +GRTD+GVHA Sbjct: 1 MKRIGLKVAYDGTDFAGYQIQPNERTVQGELESVLKNIHKGMSIRVTASGRTDTGVHARG 60 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 Q+ HFD V W P+ L L A I +L + V FHAR+SA + Y Y Sbjct: 61 QIVHFDTSLSFPVDRW-PIALNSQLPA------DICVLEAADVPADFHARYSAKTKEYRY 113 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R++T + + + LD E M+ AA L+G HDF++F + + +RTI+ Sbjct: 114 RVLTSAQADVFRRNYTYHVRYPLDVEAMQRAAVQLLGTHDFSSFCAAKAEVEDKVRTIED 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G+ + + FL+ +R VG+L +G GK ++ ++ K L A+ R+ G A Sbjct: 174 VALWREGDELIFSIRGNGFLYNMVRIIVGTLLEIGAGKRSAEEVAKILAARSREAAGKTA 233 Query: 235 PPEGL 239 P GL Sbjct: 234 PGHGL 238 >gi|163787684|ref|ZP_02182131.1| putative tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] gi|159877572|gb|EDP71629.1| putative tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] Length = 252 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 12/249 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG Y GWQ Q N S+Q +EKA+ + V V GAGRTD+GVHA + Sbjct: 1 MRFFIELSYNGKEYHGWQNQPNAISVQEVLEKALSTILKAEVSVMGAGRTDAGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E+ + LN+YL I++ + V HARF A R+Y Y+I T + Sbjct: 61 AHFDFEKEFEYKDVVYKLNSYL--PKDIAVSTIFEVKPDAHARFEAKSRTYHYKISTSKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 + A+ + LD E M A + L DF F ++++ ++T + +F Sbjct: 119 --VFDYDFAYQVQLPLDVEAMNTACKILFEYKDFQCF----SKSNTDVKTYNCDIKEAFW 172 Query: 181 ---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + A FL +R+ VG++ +G GK DL K + +++R E G P Sbjct: 173 TQNSNQLIFTITADRFLRNMVRAIVGTMVNIGLGKLKPEDLHKIIASKNRSEAGFSVPAH 232 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 233 GLYLAKIVY 241 >gi|90962375|ref|YP_536291.1| tRNA pseudouridine synthase A [Lactobacillus salivarius UCC118] gi|301300240|ref|ZP_07206452.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ACS-116-V-Col5a] gi|123391325|sp|Q1WSC1|TRUA_LACS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|90821569|gb|ABE00208.1| tRNA pseudouridine synthase A [Lactobacillus salivarius UCC118] gi|300215017|gb|ADJ79433.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Lactobacillus salivarius CECT 5713] gi|300852181|gb|EFK79853.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ACS-116-V-Col5a] Length = 256 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+G+ + G+Q Q N ++Q +EKAI ++ E + V+G+GRTDSGVHAL Q Sbjct: 4 RFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + LN+ L + +++ IV FH+R++ + YLYR+ + Sbjct: 64 VVHFDFPHPISAKGMLRGLNSMLPLD--CEVVDCKIVPNDFHSRYTTHGKRYLYRVSRGE 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ LD E ++ A + G HD+++F + QA S +RTI V + Sbjct: 122 FVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQAKSHVRTIYEAKVYED 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I FL+ Q+R V +L +G+GK D + + +DR + AP G Sbjct: 182 KVNDEIVFEFYGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRSQARQTAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLKEVYYD 250 >gi|329768896|ref|ZP_08260324.1| tRNA pseudouridine synthase A [Gemella sanguinis M325] gi|328837259|gb|EGF86896.1| tRNA pseudouridine synthase A [Gemella sanguinis M325] Length = 262 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +I Y+GS Y G+Q Q N +++Q IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRVVLICRYDGSRYHGFQIQPNNNTVQEEIEKSLRKIHKKNVRIYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KA+NA I I I++ +V+ +FH R+++I+++Y Y++ + Sbjct: 61 LHFDTDLNIPTDGWVKAINAM--IPKDIRIVSAKVVNDEFHVRYNSIKKTYSYKLYLGRE 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---N 178 + + + + A ++ +G HDF++F S + +RTI F + N Sbjct: 119 IDPFLINYVGQHKFNFNFDKAKEALKYFIGEHDFSSFCSKNTSVEDKVRTIYSFKMDRDN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N+I + FL+ +R +G+++ V GK+ +++ L ++R GP A G Sbjct: 179 QNDNIINFEITGNGFLYNMVRIIIGTVQDVAAGKYEPEYIQEILAKKERSFSGPKADASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLKEVLYD 247 >gi|291533595|emb|CBL06708.1| pseudouridylate synthase I [Megamonas hypermegale ART12/1] Length = 256 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 126/242 (52%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G+ Y G+QRQ ++Q +E A+F + G+ + + AGRTD+GVHA+ QV +F Sbjct: 18 LTLSYDGTNYHGFQRQTKVVAVQNVLEGALFKLFGDSIELAAAGRTDAGVHAIGQVVNF- 76 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +P+ + +A N L D I +L D+ F A S + Y+Y++ + Sbjct: 77 FTDGTIPIQNVVRAGNRLL--PDDIVLLKAEEADRDFSALHSVKSKIYIYKVFENELADP 134 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 W + K L+ E+M+ A +++ G HDF++FRS +SPIR I N+ Sbjct: 135 FMSRFYWHVNKKLNLEDMQEALKYIEGEHDFSSFRSAGGNDTSPIREIYEASCTKENNVY 194 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ +G + +G G+ ++ K ++A++R G +AP GLY V Sbjct: 195 TFKFWGSGFLYHMVRNIMGLMINIGLGRVDKHEVPKIIEAKNRALAGKMAPANGLYLQKV 254 Query: 245 EY 246 Y Sbjct: 255 YY 256 >gi|323699460|ref|ZP_08111372.1| tRNA pseudouridine synthase A [Desulfovibrio sp. ND132] gi|323459392|gb|EGB15257.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans ND132] Length = 251 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 118/249 (47%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ + GWQ Q ++QG +E+A+ + G V VHG+GRTD+GVHAL Q Sbjct: 3 MTRIRLTLAYEGTDFCGWQVQPADRTVQGEVERALATILGRAVRVHGSGRTDAGVHALGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + LN L + +L+ + V FHAR+ A+ ++Y Y + + Sbjct: 63 VVHFDCPDGRTGFPWQRGLNGILPRD--VRVLDAAEVPDDFHARYGAVSKTYEYCLWHER 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ R +D M AA L+G HDF F+++ S +RT+ ++ Sbjct: 121 GFCLPQRRRFVWNCGPVDFARMEAAAGLLLGEHDFAAFQNVGTDVDSTVRTVTEISRHAG 180 Query: 181 GNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 E R A FL +R+ VG L G GK + L+A DR PP+G Sbjct: 181 PTAHESVWRFTADGFLKQMVRNLVGCLVACGRGKLDLDGVRVILEAGDRTLAPATVPPQG 240 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 241 LTLVRVAYG 249 >gi|166367993|ref|YP_001660266.1| tRNA pseudouridine synthase A [Microcystis aeruginosa NIES-843] gi|166090366|dbj|BAG05074.1| tRNA pseudouridine synthase 1 [Microcystis aeruginosa NIES-843] Length = 276 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 120/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ + S+Q IEKA+ + G V +HGAGRTDSGVHA QVA Sbjct: 8 RIALVIQYVGTNFHGWQRQPDHRSVQEEIEKALADILGHDVTLHGAGRTDSGVHAAAQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ P K LNA ++ D I I V ++HARFSA+ R Y Y + T P Sbjct: 68 HFEQQSPIPPSHWAKVLNA--RLDDDIVIRASGRVPDRWHARFSALWRRYRYTLYTDPIP 125 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W + LD + M A + L+G+H F + + + G Sbjct: 126 NLFVSPFSWHYYHRPLDADVMARALKPLLGKHHLAAFHRANSSRDHSWVEVQGVECYRQG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + A FL+ +R VG L VG G+ + + Q R+ AP +GL Sbjct: 186 PFVQMEIQANGFLYGMVRLLVGMLVEVGTGERSLENFTDIWVNQRRELVKYAAPAKGLCL 245 Query: 242 DSVEYS 247 V Y+ Sbjct: 246 LRVGYA 251 >gi|160891004|ref|ZP_02072007.1| hypothetical protein BACUNI_03451 [Bacteroides uniformis ATCC 8492] gi|317480950|ref|ZP_07940030.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_1_36] gi|156859225|gb|EDO52656.1| hypothetical protein BACUNI_03451 [Bacteroides uniformis ATCC 8492] gi|316902843|gb|EFV24717.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_1_36] Length = 250 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 119/248 (47%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSDSPLDTVFMTDKLNRLLPPD--ISVYRLRAVKPDAHARFDATARMYKYYVTTAK 118 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + R + P D E M AAQ L DFT+F +H + I H Sbjct: 119 MPFNRQYRCRLFQTP---DFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCKIMHAAWTR 175 Query: 180 FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++ + + A FL +R+ VG+L VG GK + + ++ +DR + G P Sbjct: 176 VDDVTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVESFRRVIEQKDRCQAGTSVPGNA 235 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 236 LFLVDVAY 243 >gi|229027990|ref|ZP_04184143.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271] gi|228733378|gb|EEL84207.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271] Length = 235 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 117/235 (49%), Gaps = 9/235 (3%) Query: 17 GWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVAHFDL---VREWVP 72 G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA QV HFD + EW Sbjct: 5 GYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEEWQ- 63 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 ALN L D I I + ++FHAR+ R+ Y YR++ + + + Sbjct: 64 --WSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQ 119 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARS 192 P L+ ++R A + +G HDFT+F S +RTI ++ + + R V Sbjct: 120 YPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIEQDDELIFRFVGNG 179 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL+ +R VG+L VG GK + + L Q+R+ G +AP GLY V Y+ Sbjct: 180 FLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQVNYN 234 >gi|325675475|ref|ZP_08155159.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707] gi|325553446|gb|EGD23124.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707] Length = 296 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 11/251 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ ++ G IE+ + + V++ AGRTD+GVHA QV Sbjct: 21 VRLRLDISYDGTDFSGWARQPGRRTVCGEIEEKLSAIVRTPVLLTVAGRTDAGVHASGQV 80 Query: 62 AHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + +P + + + + + + +S + F ARFSAIRR Y YR+ T Sbjct: 81 AHVDVPADMIPEEPSRLVRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRHYEYRLTT-- 138 Query: 121 APLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 AP E R AW PK +D + MR A+ L+G HDF F + ++ +R + F Sbjct: 139 APYGAEPLRARDTVAW--PKDVDVDAMRKASSRLLGLHDFAAF-CKRREGATTVRELQRF 195 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D G+ + V A +F + +RS VG+ VG+G+ T + L ++R +AP Sbjct: 196 DWEQSGHELTAFVSADAFCWSMVRSLVGAALAVGEGRRTVEWMAGLLAERERASAVAVAP 255 Query: 236 PEGLYFDSVEY 246 GL V+Y Sbjct: 256 AHGLSLIRVDY 266 >gi|301161932|emb|CBW21476.1| putative tRNA pseudouridine synthase A [Bacteroides fragilis 638R] Length = 252 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 122/246 (49%), Gaps = 6/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA VA Sbjct: 5 RYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMVA 64 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + V + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 65 HFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITTVKF 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + I LD + M AA L DFT+F +H + I I H + Sbjct: 123 P--FNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQKD 180 Query: 182 NLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L+ Sbjct: 181 EYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDDFRKIIEQQNRCKAGTSAPGNALF 240 Query: 241 FDSVEY 246 +VEY Sbjct: 241 LVNVEY 246 >gi|60680398|ref|YP_210542.1| tRNA pseudouridine synthase A [Bacteroides fragilis NCTC 9343] gi|265765551|ref|ZP_06093826.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_16] gi|81316532|sp|Q5LGZ6|TRUA_BACFN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|60491832|emb|CAH06590.1| putative tRNA pseudouridine synthase A [Bacteroides fragilis NCTC 9343] gi|263254935|gb|EEZ26369.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_16] Length = 252 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 122/246 (49%), Gaps = 6/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA VA Sbjct: 5 RYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMVA 64 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + V + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 65 HFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITTVKF 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + I LD + M AA L DFT+F +H + I I H + Sbjct: 123 P--FNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQED 180 Query: 182 NLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L+ Sbjct: 181 EYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDDFRKIIEQQNRCKAGTSAPGNALF 240 Query: 241 FDSVEY 246 +VEY Sbjct: 241 LVNVEY 246 >gi|298209267|ref|YP_003717446.1| putative tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] gi|83849194|gb|EAP87063.1| putative tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] Length = 258 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG Y G+QRQ S+Q +E AI + + V + GAGRTD+GVH + + Sbjct: 1 MRYFLDIAYNGKPYHGFQRQPEDISVQEVLEDAIAVYFQKAVTIFGAGRTDTGVHGKQLI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD LN L D++++ ++ +V+ + HARF A+ R Y Y + TR+ Sbjct: 61 AHFDSDTTINESQFLYKLNKLL--PDSVAVRDVYLVNSEAHARFDAMAREYEYVVTTRKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E A I K LD E M AA+ L+ DF F + + I + + G Sbjct: 119 PFLSES--ALYIIKPLDVEAMNTAAKVLLEYTDFECFSKVKTDVKTFNCKITYAHWSQHG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L VG GK + + +++R E G +GLY Sbjct: 177 HKLVFTIRADRFLRNMVRAIVGTLLEVGLGKRLPGSIHDIIASKNRGEAGKSVAAQGLYL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 TKVLY 241 >gi|159027087|emb|CAO89272.1| truA [Microcystis aeruginosa PCC 7806] Length = 271 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ + S+Q IEKA+ + G V +HGAGRTDSGVHA QVA Sbjct: 8 RIALVIQYVGTNFHGWQRQPHHRSVQEEIEKALADILGHAVTLHGAGRTDSGVHAAAQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF P K LNA ++ D I I + V ++HARFSA+ R Y Y + T P Sbjct: 68 HFQQQSPIPPAHWAKVLNA--RLDDDIVIRASAQVPDRWHARFSALWRRYRYTLYTDPIP 125 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W + LD + M A L+G+H F + + + G Sbjct: 126 NLFVSPFSWHYYHRPLDADLMARALAPLLGKHHLAAFHRANSSRDHSWVEVQGVECYRQG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + A FL+ +R VG L VG G+ + + Q R+ AP +GL Sbjct: 186 PFVQMEIQANGFLYGMVRLLVGMLVEVGTGERSLENFTDIWVNQRRELVKYAAPAKGLCL 245 Query: 242 DSVEYS 247 V Y+ Sbjct: 246 LRVGYA 251 >gi|118101049|ref|XP_417580.2| PREDICTED: similar to MGC80334 protein [Gallus gallus] Length = 291 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 145/275 (52%), Gaps = 31/275 (11%) Query: 3 RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHAL 58 RY + +Y G+ Y G + +++G +Q +EKA + + + H + RTDSGVHAL Sbjct: 7 RYLVFFQYWGTKYSGVMQTSAEQSGIGVQNYLEKAAQNLKPVVPIKFHISSRTDSGVHAL 66 Query: 59 RQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + +L LN +LK + I IL+ V FHARFSA+ R+Y+ Sbjct: 67 CNSAHLDIQRAPGKPAFQERVLIGCLNHHLK-PEPIRILSAYRVTNNFHARFSALSRTYI 125 Query: 114 YRII---TRQAPLAL-EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQAS-- 166 YR++ T + + + E+ W P L+ M+ AAQ L+G HDF+TF S++ + Sbjct: 126 YRLLMGCTHHSEIPVFERDLCWAPPGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETPFR 185 Query: 167 SPIRTIDHFDVNSFGNLI------------EIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 SP++TI D+ + E++ +RSFL+ Q+R VG+L VG GK Sbjct: 186 SPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKLA 245 Query: 215 STDLEKALQAQDRK--ECGPLAPPEGLYFDSVEYS 247 +++ L+ +D + +AP GL+ SVEY+ Sbjct: 246 PHHIKELLEMKDARAFPAFAMAPSSGLFLKSVEYN 280 >gi|227891575|ref|ZP_04009380.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ATCC 11741] gi|227866722|gb|EEJ74143.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ATCC 11741] Length = 256 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+G+ + G+Q Q N ++Q +EKAI ++ E + V+G+GRTDSGVHAL Q Sbjct: 4 RFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + LN+ L + +++ IV FH+R++ + YLYR+ + Sbjct: 64 VVHFDFPHPISAKGMLRGLNSMLPLD--CEVVDCKIVPNDFHSRYTTHGKRYLYRVSRGE 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ LD E ++ A + G HD+++F + QA S +RTI V + Sbjct: 122 FVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQAKSHVRTIYEAKVYED 181 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I FL+ Q+R V +L +G+GK D + + +DR + AP G Sbjct: 182 KVNDEIVFEFYGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYKVKDRSQARQTAPASG 241 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 242 LYLKEVYYD 250 >gi|329767334|ref|ZP_08258859.1| tRNA pseudouridine synthase A [Gemella haemolysans M341] gi|328836023|gb|EGF85714.1| tRNA pseudouridine synthase A [Gemella haemolysans M341] Length = 265 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 133/253 (52%), Gaps = 13/253 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS Y G+Q Q N ++IQ IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRIALLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI-ITRQ 120 HFD V KALNA I I I+ + V + FH R+++ +++Y Y++ I R+ Sbjct: 61 LHFDTDLNIPDVAWVKALNA--TIPKDIRIVGATTVSEDFHVRYNSTQKTYYYKLYIGRE 118 Query: 121 -APLALEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P L ++ S D E + + ++ +G HDF++F S + +RTI + Sbjct: 119 IDPFLLN----YVGKHSFDFNFEKAQESLKYFIGEHDFSSFCSKNSSVEDKVRTIYSLTM 174 Query: 178 NS---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 N++ + FL+ +R +G+++ V GK+ + +++ L ++R+ GP A Sbjct: 175 GKDPINPNIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEADYIKEILDKKERQFAGPKA 234 Query: 235 PPEGLYFDSVEYS 247 GLY V Y Sbjct: 235 DAAGLYLKEVVYD 247 >gi|260881651|ref|ZP_05404943.2| tRNA pseudouridine synthase A [Mitsuokella multacida DSM 20544] gi|260848088|gb|EEX68095.1| tRNA pseudouridine synthase A [Mitsuokella multacida DSM 20544] Length = 264 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 6/243 (2%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G+ Y G+QRQ ++Q +E+ + + G+ + + AGRTD+GVHA QV +F Sbjct: 20 VAYDGTAYHGFQRQTPPIVAVQNILEEKLQTIFGDTIELAAAGRTDAGVHAYGQVVNF-F 78 Query: 67 VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +PV + +A N+ L D I + D F AR SA ++Y+YRI + P + Sbjct: 79 TDGRIPVDRIARAANSLL--PDDIVVRAAGEADTDFSARHSAKSKTYVYRIQQGEVPDPM 136 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGNLI 184 AW I + LD MR A ++G HDF+ FR+ SP+RT+ + + G + Sbjct: 137 TARYAWYIRRPLDVAAMREALGAILGTHDFSAFRASGGAPMSPVRTMYEATIEEAAGQQL 196 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ FL+ +R+ +G+L VG G T + L+ +DR + AP GLY + V Sbjct: 197 ICRIHGSGFLYHMVRNIIGTLANVGLGVLTPARFGEILEGRDRTKASATAPACGLYLEHV 256 Query: 245 EYS 247 +Y Sbjct: 257 DYG 259 >gi|302670312|ref|YP_003830272.1| tRNA pseudouridine synthase A TruA2 [Butyrivibrio proteoclasticus B316] gi|302394785|gb|ADL33690.1| tRNA pseudouridine synthase A TruA2 [Butyrivibrio proteoclasticus B316] Length = 265 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 9/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 Y II Y+G+ Y GW+++ + +IQG +E + + TGE+ ++ GAGRTD+GVHA Sbjct: 20 YKFIISYDGTRYHGWEKKPDLEMTIQGKLEGVLNRMIGAEGTGEVNLI-GAGRTDAGVHA 78 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 A L + +N YL + IS+ + + +FHAR++AI ++Y Y Sbjct: 79 RAMTASAVLDTHLSEAEIQSYMNTYL--PEDISVNEVKVCSDRFHARYNAIGKTYRYTCW 136 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ ++ + + + MR AA+ L+G HDF +F S +R +D ++ Sbjct: 137 YGDGKPVFDRKYVTVLDREPNVDMMRKAAELLIGEHDFRSFCGNSKMKKSTVRVLDTINI 196 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GN I FL +R G+L VG G + ++ L+A DRK+ GP A PE Sbjct: 197 EKNGNYIRFYFHGNGFLQNMVRILTGTLLEVGYGNISPEKIQDILKACDRKKAGPTARPE 256 Query: 238 GLYFDSVEY 246 GL V+Y Sbjct: 257 GLCMMKVDY 265 >gi|199598865|ref|ZP_03212276.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001] gi|199590277|gb|EDY98372.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001] Length = 247 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSLMPLD--IEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPAADELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|78780010|ref|YP_398122.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9312] gi|123768929|sp|Q318K9|TRUA_PROM9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78713509|gb|ABB50686.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9312] Length = 268 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQRQKN +++Q ++E+A+F +T ++V AGRTD+GVHA Q Sbjct: 1 MKRIALLVQYDGSNYSGWQRQKNATTVQETLERALFKITHQVVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF++ LN L I IL V +H+ +SA+ R Y Y I + Sbjct: 61 VVHFNIDCVIPANSYSDILNGLL--PSAIRILESVEVKDSWHSCYSAMYRHYRYVINNSK 118 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W K LD M A++ + G HDF F+ Q + I I + ++ Sbjct: 119 FPNLFINNWSWHRYQKILDEVLMSNASKLMEGEHDFFAFQKSGSQRKNSITKIKNVEIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K + Q + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISPEIFTDIWVNQKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|291460751|ref|ZP_06600141.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] gi|291416710|gb|EFE90429.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] Length = 266 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 7/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R + I Y+G+ Y GWQ Q+ S+I+G + +A+ L+ GE + + GA RTD+GVHA + Sbjct: 1 MRRIRLDIAYDGTNYHGWQYQEGQSTIEGELRRALSELLPGEEIGLTGASRTDAGVHARQ 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A FD ALN ++ + I IL + FH RFS ++ Y YRI Sbjct: 61 NTACFDTKSRIPGANFSMALNC--RLPEDIRILRSMEAGEDFHPRFSPHKKVYEYRIGRS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ----ASSPIRTIDHF 175 + P L++ + L MR+AA+ LVG HDF +F + Q + +RT+ Sbjct: 119 RIPDPLKRLYCFPFSFPLSLSEMRLAAEELVGEHDFRSFANPDSQVLMHGGAAVRTLYEL 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G + + FL+ IR G+L +G G+ + ++ + L A+DR+ G AP Sbjct: 179 SLREEGEELILHFEGSGFLYHMIRILTGTLLEIGSGRRRAAEIPEILAARDRRRAGFTAP 238 Query: 236 PEGL 239 +GL Sbjct: 239 AKGL 242 >gi|219849858|ref|YP_002464291.1| tRNA pseudouridine synthase ACD [Chloroflexus aggregans DSM 9485] gi|254789611|sp|B8G6P6|TRUA_CHLAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219544117|gb|ACL25855.1| tRNA pseudouridine synthase A [Chloroflexus aggregans DSM 9485] Length = 278 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 123/250 (49%), Gaps = 14/250 (5%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +++ Y+G+ + G Q Q + ++QG+IE A +T E + AGRTD+GVHA QVAH Sbjct: 5 ALLLAYDGTDFAGSQWQTDIRTVQGAIEAAWEALTQEQRRIVLAGRTDAGVHASGQVAHV 64 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + LNA+L +++ N+ + FHAR+SAI R Y Y I PL Sbjct: 65 QTATRHSLATIWRGLNAHLPTD--VTVQNVGEAVRDFHARYSAIEREYRYLIDCAPVPLP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--------DHFD 176 + +A +LD M A + L G HDF F + S +RT+ FD Sbjct: 123 QLRHQALHYAGTLDVTAMATALKLLEGTHDFAAFTTATPSQRSTVRTMYWTRIVERVWFD 182 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L+ I + A +FL +R VG+L LVG G+ T + L +DR+ GP AP Sbjct: 183 ----RRLLAIELAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLAGRDRRLAGPTAPA 238 Query: 237 EGLYFDSVEY 246 GL +V Y Sbjct: 239 HGLTLTAVRY 248 >gi|284929586|ref|YP_003422108.1| pseudouridylate synthase I [cyanobacterium UCYN-A] gi|284810030|gb|ADB95727.1| pseudouridylate synthase I [cyanobacterium UCYN-A] Length = 281 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 117/245 (47%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R +II+Y+G+ + GWQRQ ++Q IE I G V +HGAGRTD+GVHA QVA Sbjct: 13 RIALIIQYSGNRFHGWQRQPYRRTVQADIENTITKSLGYKVSIHGAGRTDAGVHATGQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD P L + LN YL + I I N V +HARFSA R Y Y + T Sbjct: 73 HFDYAGPIPPKSLARVLNRYL--PEDILIRNSKEVSINWHARFSAQWRRYRYTLYTNNDC 130 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K +W + L ++M A + L+G H T FR Q + I + G Sbjct: 131 NLLIKSYSWHYYRYPLKVKSMLDALKSLLGTHHLTAFRKKGSQRNHSWVEIQDVECYRKG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ +R +G L VG K + + + + Q R+ AP GL Sbjct: 191 AFIHIEIQANGFLYGMVRLLMGMLVEVGIDKLSLANFNQIWRDQKREYVRHSAPANGLCL 250 Query: 242 DSVEY 246 V Y Sbjct: 251 LGVGY 255 >gi|78357749|ref|YP_389198.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123754841|sp|Q30XU3|TRUA_DESDG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78220154|gb|ABB39503.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 278 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 133/273 (48%), Gaps = 29/273 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ---------KNGSSIQGSIEKAIFLVTGEIVVVHGAGRT 51 M R +II Y G+ Y GWQ Q ++Q ++E A + G V VHGAGRT Sbjct: 1 MARLKLIIAYAGTRYAGWQIQCLPAGRPHAVQQPTVQQAVEDAAKAILGSAVRVHGAGRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 DSGVHA QVAH D+ V +ALNA K+ + IS+L ++V FHARF A+++ Sbjct: 61 DSGVHAEGQVAHLDIPDAKAAVDWRRALNA--KLPEDISVLQAAVVPDGFHARFDAVKKR 118 Query: 112 YLYRIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y YRI +A L + R ++ + LD M AA + G HDF +F++ + ++ +R Sbjct: 119 YTYRIWLTRA-FVLPQRRPFVHMTGPLDIAAMDAAAAFMTGTHDFASFQNAGTELATTVR 177 Query: 171 TI-----------DHF----DVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 T+ D F D L + A FL +R+ +G L G G+ Sbjct: 178 TVYSITRTPGLAPDDFPRSHDTTPRAPLELAWHFEADGFLKQMVRNMMGLLLWTGTGRCA 237 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 D+ + A+DR+ P AP GL + V Y Sbjct: 238 PEDVPAIIAARDRRLSAPTAPACGLTMERVFYP 270 >gi|241890020|ref|ZP_04777318.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379] gi|241863642|gb|EER68026.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379] Length = 265 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 132/253 (52%), Gaps = 13/253 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS Y G+Q Q N ++IQ IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRVVLLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI-ITRQ 120 HFD KALNA I I I+ + + FH R+++ +++Y Y++ I R+ Sbjct: 61 LHFDTDLNIPDEAWVKALNA--TIPKDIRIVGATSASEDFHVRYNSTQKTYYYKLHIGRE 118 Query: 121 A-PLALEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P L ++ S D E + A Q+ +G HDF++F S + +RTI + Sbjct: 119 VDPFLLN----YVGKHSFDFNFEKAQEALQYFIGEHDFSSFCSKNSSVEDKVRTIYSLTM 174 Query: 178 NS---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 N++ + FL+ +R +G+++ V GK+ + +++ L+ ++R+ GP A Sbjct: 175 EKDLINPNIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEANYVKEILEKKERQFAGPKA 234 Query: 235 PPEGLYFDSVEYS 247 GLY V Y Sbjct: 235 DAAGLYLKEVLYD 247 >gi|218296263|ref|ZP_03497019.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23] gi|218243335|gb|EED09865.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23] Length = 259 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ+ G ++QG +EKA+ + G + AGRTD+GVHAL Sbjct: 1 MRRILLLTEYDGTHFAGLQRQRQGLRTVQGELEKALPHI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H DL P + +ALN L + + ++ V FHAR A+ R+Y YR++ R Sbjct: 60 MPFHIDLQSPIPPEKVPEALNRLL--PEDLKVVAAREVAPDFHARKDALWRAYRYRVLLR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 P L + R + + LD + M A L+GRH+F F + +V Sbjct: 118 PHPSPLLRHRVLWLRRPLDLKAMEEALPLLLGRHNFLGFAKEETREGVRELLEARLEVLE 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + RSFL Q+R VG+L VG G+ + ++ L+ DR+ G AP Sbjct: 178 GEMGPEVRFYFKGRSFLRGQVRGMVGTLLEVGLGRRSPESVKAILETADRRLAGQSAPAT 237 Query: 238 GLYFDSVEYS 247 GLYF Y Sbjct: 238 GLYFLEAAYP 247 >gi|326932368|ref|XP_003212291.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Meleagris gallopavo] Length = 292 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 144/275 (52%), Gaps = 31/275 (11%) Query: 3 RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHAL 58 RY + +Y G+ Y G +++G +Q +EKA + + + H + RTDSGVHAL Sbjct: 7 RYLVFFQYWGTKYSGVMHTSAEQSGVGVQNYLEKAAQNLKPVVPIKFHISSRTDSGVHAL 66 Query: 59 RQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + +L LN +LK + I IL+ V FHARFSA+ R+Y+ Sbjct: 67 CNSAHLDIQRAPGKPAFQEKMLIGCLNHHLK-PEPIRILSAYRVTNNFHARFSALSRTYI 125 Query: 114 YRII---TRQAPLAL-EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQAS-- 166 YR++ T + + + E+ W L+ M+ AAQ L+G HDF+TF S++ + Sbjct: 126 YRLLMGCTHHSEIPVFERDLCWAPTGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETPFR 185 Query: 167 SPIRTIDHFDVNSFGNLI------------EIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 SP++TI D+ + E++ +RSFL+ Q+R VG+L VG GK Sbjct: 186 SPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKLA 245 Query: 215 STDLEKALQAQDRKECGP--LAPPEGLYFDSVEYS 247 +++ L+ +D + P +AP GL+ SVEY+ Sbjct: 246 PYHIKELLEMKDARAFPPFAMAPSSGLFLKSVEYN 280 >gi|193214164|ref|YP_001995363.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC 35110] gi|193087641|gb|ACF12916.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC 35110] Length = 265 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 7/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 M++EY+G+ + GWQRQ +IQG IE + V E V + AGRTD+GVHA QVA Sbjct: 23 MLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRVLQEPVELIAAGRTDAGVHAKAQVA 82 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F L ALN L I I+ + + F+ARF A R+Y Y ++TR + Sbjct: 83 NFLTENSLSISRLKHALNGLL--PSQIKIIEIEDAPENFNARFDAKSRTYRYFLLTRYS- 139 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AL + D M Q ++G+HDFT+F Q + I TI+ N Sbjct: 140 -ALLSRFTGIYRYDFDARAMNACCQEILGQHDFTSFSKAGSQTKTRICTIEKARWYQRKN 198 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A FLH+ +R VG++ VG+G+ + D + A+D A P+GL+ Sbjct: 199 GLMLEIRANRFLHSMVRLLVGTMIKVGNGELSVQDFDAIFSAKDVCLAATSAQPQGLFLW 258 Query: 243 SVEY 246 VEY Sbjct: 259 HVEY 262 >gi|89100313|ref|ZP_01173178.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911] gi|89084934|gb|EAR64070.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911] Length = 245 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R+ I Y+GS + G+Q Q ++Q +E+A+ + G V + +GRTD+GVHA Sbjct: 1 MQRFKCKIAYDGSQFSGYQVQPGKRTVQLEVERALAKIHKGNPVKIFASGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L I++ + + FHARF A + Y Y I Sbjct: 61 QVIHFDSPLAIPEDRWVTALNSLL--PKDIAVESTEKAAEGFHARFDACGKEYRYFIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + E+ ++ P LD MR AA+HL+G HDF++F + +R I V Sbjct: 119 KIRSPFERHYSYHYPHPLDIRAMREAAEHLLGTHDFSSFCASRTDVEDKVREIRKVHVEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E+ FL+ +R G+L G G + + +DR G AP EGL Sbjct: 179 AGEMLELHFTGSGFLYNMVRILTGTLLEAGAGTRDPGSFPEVISGRDRSLAGKTAPAEGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWKVFY 245 >gi|228470580|ref|ZP_04055437.1| tRNA pseudouridine synthase A [Porphyromonas uenonis 60-3] gi|228307707|gb|EEK16683.1| tRNA pseudouridine synthase A [Porphyromonas uenonis 60-3] Length = 262 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 10/245 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA +AH DL Sbjct: 12 VAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQPISVTGAGRTDAGVHAYSMMAHADLP 71 Query: 68 REWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 P+ + + L L+ IS+ +++ V HARF A R Y Y I P + Sbjct: 72 IPHPPLAQIQRGLCGILR--GGISVRSVTPVIPTAHARFDATSRRYHYYISACSNPFWGD 129 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-----DHFDVNSFG 181 W D E M A +H +G HDFT+F +H Q T+ + ++ Sbjct: 130 Y--CWERRTLPDMELMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQVEMPGLW 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V A FLH +R+ VG+L VG G+ T + + +Q +DR G AP L+F Sbjct: 188 DAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQREDRTLAGSAAPARALFF 247 Query: 242 DSVEY 246 Y Sbjct: 248 VEATY 252 >gi|253681679|ref|ZP_04862476.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] gi|253561391|gb|EES90843.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] Length = 245 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I+Y+G+ Y GWQ+ + ++IQ IE + + GE V + +GRTD+GVHA Q+A+F Sbjct: 6 LTIQYDGTRYKGWQKLGDADNTIQYKIESVLNELLGEEVSLIASGRTDAGVHANMQIANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + K YL I I N+S + FH+R++ ++ Y Y I Sbjct: 66 KTNSNVTNDTILKHCYKYL--PQDIVITNISDASENFHSRYNVKKKIYTYNIYNNPVHDV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + ++ I ++LD + M+ A++ +G HDF +F ++ + S ++TID N I Sbjct: 124 FTRKYSYHIKETLDIKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTIDSITFKKKDNNI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 EI FL+ IR VGSL VG GK T DL+ + +DR AP GL V Sbjct: 184 EIIFTGNGFLYKMIRILVGSLINVGLGKLTIEDLQNIMNKKDRSIAPETAPAHGLILTEV 243 Query: 245 EY 246 +Y Sbjct: 244 KY 245 >gi|282877805|ref|ZP_06286618.1| tRNA pseudouridine synthase A [Prevotella buccalis ATCC 35310] gi|281300121|gb|EFA92477.1| tRNA pseudouridine synthase A [Prevotella buccalis ATCC 35310] Length = 243 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 17/253 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+S+Q +++A+ ++ E +V GAGRTD+GVHA + Sbjct: 1 MHRYFICFRYDGTAYHGWQVQPNGNSVQAELQQAMSVILREPIVTVGAGRTDAGVHARKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E LN L IS+LN+ + + HARFSA R+Y Y I + Sbjct: 61 FAHFDFHAEIDTKQFTYKLNRLL--PRDISVLNVFSLSEDMHARFSAKWRTYHYYIHLSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + +P LD M AA HL+ DF F C++++ ++T V + Sbjct: 119 NPFL--RHYSCQLPYQLDFSLMNEAASHLLKVEDFGAF----CKSNTDVKTTLCHVVQA- 171 Query: 181 GNLIEIR-------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 +E+ + A FL +R+ VG+L VG + T + + +++ +R + G Sbjct: 172 -EWVEVGEDAWYFVIKANRFLRNMVRAVVGTLIEVGRHRMTLDEFDAVVRSGNRTKAGES 230 Query: 234 APPEGLYFDSVEY 246 P L+ + VEY Sbjct: 231 MPANALFLEDVEY 243 >gi|302874184|ref|YP_003842817.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307689556|ref|ZP_07632002.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302577041|gb|ADL51053.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 245 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 7/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IE++GS Y GWQ QK+ ++QG IE + +TGE + V G R D+G HA +A+F Sbjct: 6 LTIEFDGSRYKGWQNQKDKEQTVQGKIETVLSKMTGEEIEVIGCERIDTGAHADGYIANF 65 Query: 65 DLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 E + C A++ YL + + I + + VD++FHAR++A + Y Y I Sbjct: 66 KTNCE----LSCTAISIYLYEFLPEDILVKFIEEVDERFHARYNAKAKVYEYVINNNNLR 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + ++ I L+ E M AA+ G+HDF F ++ A S +RT++ + Sbjct: 122 NVFNRKYSYHIDIDLNIEEMLKAAEAFKGKHDFKAFTNLKSSAKSTVRTVEDILIKKDNG 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI+I ++A FL R VG+L VG G +T++ K L+ + E P+A + L+ Sbjct: 182 LIKIELIADDFLLNMERIIVGTLIEVGKGNVKATNVFKMLKDGKKIETIPMAQAKALFLK 241 Query: 243 SVEY 246 V Y Sbjct: 242 KVIY 245 >gi|229552739|ref|ZP_04441464.1| tRNA-pseudouridine synthase I [Lactobacillus rhamnosus LMS2-1] gi|229313945|gb|EEN79918.1| tRNA-pseudouridine synthase I [Lactobacillus rhamnosus LMS2-1] Length = 242 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 5/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL QV F Sbjct: 1 MTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALGQVISF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D + +A+N+ + + I IL IV FHAR+SA + Y YR+ Sbjct: 61 DYPGNIPAESMLRAMNSLMPLD--IEILKAEIVAADFHARYSAKGKRYRYRVARGYYTNP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--NSFGN 182 + P LD + + +A + LVG HDFT+F + +RTI V + N Sbjct: 119 FNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEEDPATN 178 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + FL+ +R V + +G+G+ D ++ + +DR++ AP GLY Sbjct: 179 ELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPASGLYLK 238 Query: 243 SVEY 246 V Y Sbjct: 239 EVYY 242 >gi|145294737|ref|YP_001137558.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum R] gi|140844657|dbj|BAF53656.1| hypothetical protein [Corynebacterium glutamicum R] Length = 294 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 133/263 (50%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q ++Q +E + +V E V + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 65 Query: 60 QVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L D I + + + F ARFSA+RR Sbjct: 66 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLL--PDDIRVHGVRFAEPGFDARFSAMRRH 123 Query: 112 YLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YRI T A P W PK ++ E M++AA L+G HDF F A++ Sbjct: 124 YVYRITTHPAGALPTRRHDTAQW--PKPVELERMQLAADALLGLHDFVAFCKAKPHATT- 180 Query: 169 IRTIDHF---DVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R + F DV++ + E VVA +F + +RS VGS VG+G+ S + L Sbjct: 181 VRELQKFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTTELLD 240 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A +R P+AP +GL V+Y Sbjct: 241 ASERSPMVPVAPAKGLSLVGVDY 263 >gi|19551801|ref|NP_599803.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC 13032] gi|62389456|ref|YP_224858.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC 13032] gi|41324790|emb|CAF19272.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 294 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 133/263 (50%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q ++Q +E + +V E V + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 65 Query: 60 QVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L D I + + + F ARFSA+RR Sbjct: 66 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLL--PDDIRVHGVRFAEPGFDARFSAMRRH 123 Query: 112 YLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YRI T A P W PK ++ E M++AA L+G HDF F A++ Sbjct: 124 YVYRITTHPAGALPTRRHDTAQW--PKPVELERMQLAADALLGLHDFVAFCKAKPHATT- 180 Query: 169 IRTIDHF---DVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R + F DV++ + E VVA +F + +RS VGS VG+G+ S + L Sbjct: 181 VRELQKFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTAELLD 240 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A +R P+AP +GL V+Y Sbjct: 241 ASERSPMVPVAPAKGLSLVGVDY 263 >gi|238927931|ref|ZP_04659691.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531] gi|238884264|gb|EEQ47902.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531] Length = 256 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 3/243 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + I Y+G+ Y G+QRQ ++Q +E A+ + GE+V + AGRTD+GVHA QV + Sbjct: 10 ALTIAYDGTNYHGFQRQTPPVLAVQNVLEGALAKICGEMVELAAAGRTDAGVHAYGQVVN 69 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F L +A+N L +S ++F AR SA ++Y+YRI + P Sbjct: 70 FFTDGRIPTEHLPRAVNGLLPPDIVVS--QAWEAPREFSARHSATGKAYVYRIEECRVPN 127 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + AW + + LD E M L G HD+++FR+ SP+RT+D + Sbjct: 128 PFTRNYAWQVFQPLDHEAMHAVLLLLKGTHDYSSFRAAGGAPMSPVRTLDEIRLTEEEGR 187 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + I V FL+ +R+ V + VG G+ + + + A+DR+ P AP GLY + Sbjct: 188 LSIYVHGTGFLYHMVRNIVSTAAAVGMGRISPSRFAEIFAARDRRLAPPTAPACGLYLLA 247 Query: 244 VEY 246 V+Y Sbjct: 248 VDY 250 >gi|313895792|ref|ZP_07829346.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 137 str. F0430] gi|312975217|gb|EFR40678.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 128/243 (52%), Gaps = 6/243 (2%) Query: 8 IEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G+ Y G+QRQ ++Q +EK + V GE V + AGRTD+GVHA QV +F Sbjct: 20 LSYDGTRYHGFQRQSLPVVAVQNVLEKVLAEVCGESVELAAAGRTDTGVHAYGQVVNF-F 78 Query: 67 VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +PV L +A+N L I+++ ++ F AR S+ ++YLYRI P Sbjct: 79 TDGRIPVAQLPRAVNGLLP--PDIAVMAAWEAERDFSARHSSTGKAYLYRIERCTVPNPF 136 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SFGNLI 184 + AW I + LD MR + LVG HD+++FR+ SP+RT+D ++ G + Sbjct: 137 TRNYAWQIFRPLDVAAMRTVLRLLVGTHDYSSFRAAGGAPMSPVRTLDEIRLDEEEGGQL 196 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ + ++ VG G+ ++ + A DR+ P AP GLY V Sbjct: 197 SCYMHGNGFLYHMVRNIMSTVVHVGLGRISTDRFTEIFAAHDRRLASPTAPACGLYLLHV 256 Query: 245 EYS 247 +Y+ Sbjct: 257 DYA 259 >gi|297829238|ref|XP_002882501.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328341|gb|EFH58760.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 323 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 131/255 (51%), Gaps = 14/255 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T E+ ++ GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELHLI-GAGRTDAGVHAW 100 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 101 GQVAHFVTPFNYTSLDSFHAALNGLLP--KDIRVRELSAAVPEFHARFSAHSKVYRYQIY 158 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHF 175 ++ A+ L+ MR AA VG HDF+ F + + P++TI F Sbjct: 159 NDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGMHDFSAFANATREDGLPDPLKTISRF 218 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL-- 233 DV G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 219 DVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTT 278 Query: 234 --APPEGLYFDSVEY 246 APP GL SV+Y Sbjct: 279 LPAPPHGLCLVSVKY 293 >gi|111220576|ref|YP_711370.1| tRNA pseudouridine synthase A [Frankia alni ACN14a] gi|111148108|emb|CAJ59776.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) [Frankia alni ACN14a] Length = 288 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/262 (35%), Positives = 131/262 (50%), Gaps = 30/262 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALR 59 ++R + I Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA Sbjct: 19 LVRLRLDIAYDGTPFAGWARQPGQRTVQGDVEDALIRVARLAAVRLTVAGRTDSGVHAAG 78 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + VP+ L + LN L S + + L+ F ARFSA+ R Y+YRI Sbjct: 79 QVAHVDLPTD-VPLGGLARRLNGVLDRS--VRVTGLAPAPAGFDARFSALSRRYVYRIT- 134 Query: 119 RQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIR 170 AP E R AW P+ LD M AA LVG HDF F C + ++ +R Sbjct: 135 -DAPFGAEPLRRFDTLAW--PRPLDVPAMASAALLLVGEHDFAAF----CRRREGATTVR 187 Query: 171 TIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQ 225 T+ DV ++ V A +F H+ +R+ VG+L VG+G+ W + L + L Sbjct: 188 TLLRLDVLRRPDGVVVADVEADAFCHSMVRALVGALLAVGEGRRPPQWPAAVLRRGL--- 244 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R +AP GL V Y Sbjct: 245 -RDPAVTVAPAHGLTLVEVRYP 265 >gi|156743919|ref|YP_001434048.1| tRNA pseudouridine synthase ACD [Roseiflexus castenholzii DSM 13941] gi|189029997|sp|A7NR34|TRUA_ROSCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156235247|gb|ABU60030.1| tRNA pseudouridine synthase A [Roseiflexus castenholzii DSM 13941] Length = 270 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 128/252 (50%), Gaps = 12/252 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ + G Q Q NG S+QG++E A +TGE + AGRTD+GVHA Q Sbjct: 1 MRNIALRIEYDGTDFVGSQWQTNGRSVQGALEAAWQQLTGERRRMILAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + LN L + I IL V ++FHAR+SA+RR Y Y I + Sbjct: 61 VANVSTNTRHSLATIIRGLNGVLP--EDIGILAAWEVPEEFHARYSAVRREYRYVIDNGR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P L + A +P+ LD M A Q ++G HDF S Q S +R +D Sbjct: 119 TPSPLLRRHAAYVPRRLDVAAMDRAIQQVIGTHDFAPL-SDGPQEGSTVRIC--YDARCT 175 Query: 180 ----FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +G L+ I V A +FL +R+ VG+L VG+G+ + L +R+ LA Sbjct: 176 CTEVWGQPLVLIDVAANAFLRHMVRNLVGTLIQVGEGRIDADGFAAVLAGANRR-ARVLA 234 Query: 235 PPEGLYFDSVEY 246 P GLY +V Y Sbjct: 235 PAHGLYLMAVRY 246 >gi|298243939|ref|ZP_06967746.1| tRNA pseudouridine synthase A [Ktedonobacter racemifer DSM 44963] gi|297556993|gb|EFH90857.1| tRNA pseudouridine synthase A [Ktedonobacter racemifer DSM 44963] Length = 264 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 125/252 (49%), Gaps = 16/252 (6%) Query: 8 IEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 IEY+G+ Y G+QRQ +G ++QG++E A+ ++G + V GAGRTD GVHA QV HF Sbjct: 7 IEYDGTDYHGFQRQSASHGPTVQGTLEAAVTQISGVQITVMGAGRTDVGVHASGQVIHFR 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + +ALNA L T+ + + + FHARFSA RSY Y I P AL Sbjct: 67 TESRLTVEVWRRALNAVLP--STVVVRWAKEMPEGFHARFSAQSRSYRYTIWNECFPTAL 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF----- 180 A+ + LD M A ++L+GR DF F S+P++ H + + Sbjct: 125 RARYAYHCSRELDVTLMDDACRYLLGRKDFGAF-GHSPNDSNPLKPGPHHCIRTMLEARC 183 Query: 181 ------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 LI A +FL Q+R VG+L LVG + + + + +Q ++ G A Sbjct: 184 LRDHQQAELIYCDFTADAFLTGQVRRMVGTLLLVGQQRLSVAEFAEIVQRAEKTHPGSAA 243 Query: 235 PPEGLYFDSVEY 246 P GL VEY Sbjct: 244 PSLGLCLVRVEY 255 >gi|315655839|ref|ZP_07908737.1| tRNA pseudouridine synthase A [Mobiluncus curtisii ATCC 51333] gi|315489903|gb|EFU79530.1| tRNA pseudouridine synthase A [Mobiluncus curtisii ATCC 51333] Length = 314 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 135/276 (48%), Gaps = 32/276 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA Q Sbjct: 17 VMRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALAVIYRQTVELTVAGRTDAGVHASGQ 76 Query: 61 VAHFDLV----REWVPVILCKALNAYLK---------------------ISDTISILNLS 95 VAHF + R P L L A L+ D + + Sbjct: 77 VAHFTVPEVGDRIVPPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAVDALVVTTAM 136 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 +V + F ARFSA+ R Y+YRI+ A PL + W P LD M +A L+G Sbjct: 137 VVPETFDARFSALARHYVYRIVDDLAVRNPLC--RNYCWWYPTPLDAAAMNASAAVLLGE 194 Query: 153 HDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 HDF F + ++ IRT+ + + + ++EIRV A +F H+ +RS VG+L VG Sbjct: 195 HDFAAFCKPR-EGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRA 253 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 K + L AL A+ R P+AP GL V+Y Sbjct: 254 KRDTVWLADALAAKARIPEIPVAPALGLTLTQVDYP 289 >gi|332300500|ref|YP_004442421.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica DSM 20707] gi|332177563|gb|AEE13253.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica DSM 20707] Length = 262 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 10/250 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA +A Sbjct: 7 RVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQSISVTGAGRTDAGVHAYSMMA 66 Query: 63 HFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H DL P+ + + L L+ IS+ +++ V HARF A R Y Y I Sbjct: 67 HADLPIPHPPLAQIQRGLCGILR--GGISVRSVTPVIPTAHARFDATSRRYHYYISACSN 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-----DHFD 176 P + W D M A +H +G HDFT+F +H Q T+ + + Sbjct: 125 PFWSDY--CWERRTLPDMALMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQVE 182 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + V A FLH +R+ VG+L VG G+ T + + +Q++DR G AP Sbjct: 183 MPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQSEDRSLAGSAAPA 242 Query: 237 EGLYFDSVEY 246 L+F Y Sbjct: 243 RALFFVEATY 252 >gi|261415083|ref|YP_003248766.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371539|gb|ACX74284.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325886|gb|ADL25087.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] Length = 250 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 16/254 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 +RY EY GS ++GWQ Q G ++Q ++E+A+ + V G+GRTD+GVH Sbjct: 1 MRYRFRCEYLGSAFYGWQEQNCGGKLRFVTVQSTLEEALSTALRAPIRVVGSGRTDTGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q HFD E P + +++N K I I +L F+AR+ A+ R Y Y I Sbjct: 61 ARGQCVHFDFDGELDPQKVVRSVNGLTK--RLIRIRDLEPCASDFNARYDAVLRYYQYTI 118 Query: 117 ITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 TR P+AL + W +LD E M AQ +G HDF F S + T+ F Sbjct: 119 FTR--PVALMRDFGWECGSLNLDIEAMGREAQSFLGEHDFIDFCIPRNDGKSTLCTLSEF 176 Query: 176 ---DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +N + + I+ FLH Q+R+ VG+L VG G++ + + + + E Sbjct: 177 RLERLNDWSCMFHIK--GNRFLHRQVRAMVGTLFDVGRGRYPEGTVNQIFEKNFKGE-RT 233 Query: 233 LAPPEGLYFDSVEY 246 APP+GL ++VEY Sbjct: 234 WAPPQGLVLENVEY 247 >gi|225018926|ref|ZP_03708118.1| hypothetical protein CLOSTMETH_02877 [Clostridium methylpentosum DSM 5476] gi|224948306|gb|EEG29515.1| hypothetical protein CLOSTMETH_02877 [Clostridium methylpentosum DSM 5476] Length = 250 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I YNG+ Y GWQ QKN ++Q ++ A+ + G V G RTD+GVHA + Sbjct: 10 IAYNGAAYHGWQVQKNALTVQEVVQDAVEKLFGRREDVVGCSRTDTGVHANEYFFNMHTE 69 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 ++ + + +N L D +++L + V++ FHAR+ + Y+Y+I ++ Sbjct: 70 KDIPCRSVMRGMNTLL--PDDVAVLGCTEVEEDFHARYCCTGKEYIYKIWNAESRNPFLH 127 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + P LD + + A + +G HDF+ F S +RTI + G+L+ + Sbjct: 128 RQCLRYPFPLDIQLLNRAMERFLGTHDFSAFCSAGSDVEDRVRTITQAHASREGDLVTLT 187 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V FL+ +R VG+L V +GK + D+ + ++DR G APP GL+ + V Y Sbjct: 188 VRGDGFLYNMVRILVGTLIEVQEGKLSPDDIPSVIASRDRSRAGKTAPPCGLFLNRVFY 246 >gi|293190229|ref|ZP_06608725.1| tRNA pseudouridine synthase A [Actinomyces odontolyticus F0309] gi|292821045|gb|EFF79998.1| tRNA pseudouridine synthase A [Actinomyces odontolyticus F0309] Length = 302 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 37/277 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW Q ++QG +E A+ + + E VV AGRTD+GVHA QV Sbjct: 5 RLRLDLGYDGTDFRGWAAQPGLRTVQGEVEAALAMASREDVVTTVAGRTDAGVHARHQVC 64 Query: 63 HFDLVR---------------EWVPVILCKALN----------------AYLKISDTISI 91 H D+ + V + + LN A + + + I Sbjct: 65 HADISEAAWARLSPRGGESDEQAVASAIVRRLNKILSGRYGERARGRDLAVARGTCDVRI 124 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + ++VD F ARFSA+ RSY YR+ R PL R W + + LD M A L+G Sbjct: 125 YSAAVVDPSFDARFSALGRSYAYRVSDRPEPLG-RWDRLW-VEEPLDEAAMNEAGAALLG 182 Query: 152 RHDFTTFRSIHCQASSPIRTIDHF--DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 HDF F + ++ IRT+ + ++ G L+ RV A +F H+ +RS VG+L LVG Sbjct: 183 EHDFLGFCRPR-EGATTIRTLRTLLAERDAEGTLV-FRVEADAFCHSMVRSLVGALLLVG 240 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G + L+A+ R E P+AP GL + VEY Sbjct: 241 SGARDVAYPVQILRARSRSEAAPIAPAHGLTLEGVEY 277 >gi|282882119|ref|ZP_06290760.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B] gi|281298149|gb|EFA90604.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B] Length = 243 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 118/239 (49%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y G+Q Q +I+G + KAI + ++ AGRTD GVHAL Q +F Sbjct: 7 VTYDGTNYHGYQVQNKLKTIEGELSKAINNTLKKETKIYSAGRTDRGVHALGQYVNFYTD 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L + +N +L D IS+++ V FHARFSA + Y Y + + A+ Sbjct: 67 TTIDLGNLPRVINFHL--PDDISVISAKEVPFDFHARFSAKEKIYRYVVYNNKYRNAIYH 124 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 RA+ P SLD M + ++L+G+ DF +F IRTI V I Sbjct: 125 NRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDNKFIYFD 184 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +SFL IR +G+ +G GK +++ L+ Q+RK GP AP GLY ++ Y Sbjct: 185 FQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYLMNILY 243 >gi|42559832|sp|Q8NSV0|TRUA_CORGL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21323332|dbj|BAB97960.1| Pseudouridylate synthase (tRNA psi55) [Corynebacterium glutamicum ATCC 13032] Length = 289 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 133/263 (50%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q ++Q +E + +V E V + AGRTD+GVHA Sbjct: 1 MRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L D I + + + F ARFSA+RR Sbjct: 61 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLL--PDDIRVHGVRFAEPGFDARFSAMRRH 118 Query: 112 YLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YRI T A P W PK ++ E M++AA L+G HDF F A++ Sbjct: 119 YVYRITTHPAGALPTRRHDTAQW--PKPVELERMQLAADALLGLHDFVAFCKAKPHATT- 175 Query: 169 IRTIDHF---DVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R + F DV++ + E VVA +F + +RS VGS VG+G+ S + L Sbjct: 176 VRELQKFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTAELLD 235 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A +R P+AP +GL V+Y Sbjct: 236 ASERSPMVPVAPAKGLSLVGVDY 258 >gi|312140887|ref|YP_004008223.1| tRNA pseudouridine synthase a [Rhodococcus equi 103S] gi|311890226|emb|CBH49544.1| tRNA pseudouridine synthase A [Rhodococcus equi 103S] Length = 274 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 126/245 (51%), Gaps = 11/245 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + GW RQ ++ G +E+ + + V++ AGRTD+GVHA QVAH D+ Sbjct: 5 ISYDGTDFSGWARQPGRRTVCGEVEEKLSAIVRTPVLLTVAGRTDAGVHASGQVAHVDVP 64 Query: 68 REWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + +P + + + + + + +S + F ARFSAIRR Y YR+ T AP E Sbjct: 65 ADMIPEEPSRLVRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRHYEYRLTT--APYGAE 122 Query: 127 KGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 R AW PK +D + MR A+ L+G HDF F + ++ +R + FD G Sbjct: 123 PLRARDTVAW--PKDVDVDAMREASSRLLGLHDFAAF-CKRREGATTVRELQRFDWEQSG 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V A +F + +RS VG+ VG+G+ T + L ++R +AP GL Sbjct: 180 HELTAFVSADAFCWSMVRSLVGAALAVGEGRRTVEWMAGLLAERERASAVAVAPAHGLSL 239 Query: 242 DSVEY 246 V+Y Sbjct: 240 IRVDY 244 >gi|317418864|emb|CBN80902.1| tRNA pseudouridine synthase-like 1 [Dicentrarchus labrax] Length = 285 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 31/274 (11%) Query: 3 RYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHA 57 RY + +Y G+ Y G + Q +Q +E AI L+ V + + RTD GVHA Sbjct: 6 RYLIFFQYIGTKYSGVVKVPPHQLPSKGVQDHLEDAIRKLMPLNPVSLSVSSRTDRGVHA 65 Query: 58 LRQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 L AHFDL R+ + IL +ALN YLK ++ I I N V FHAR+ A R+Y Sbjct: 66 LSNSAHFDLQRKNNLPPFTEGILIEALNFYLK-TEQIRITNAHRVPDDFHARYQAQSRTY 124 Query: 113 LYRI---ITRQAPLALEKGR-AW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS- 166 +YRI I Q L L + + W L LD MR AA LVG HDF++FR++ + + Sbjct: 125 VYRIALGIPNQLLLPLTELKFCWSLRNTELDVGAMRKAAALLVGNHDFSSFRAVSTEMAF 184 Query: 167 -SPIRTIDHFDVNSFGNLI-----------EIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 +P++ +D + G+ + E+ ARSFL+ Q+R G+L VG G+ + Sbjct: 185 KNPVKVLDVASIQPGGSFVQSHFQREVLFWEVTFKARSFLYKQVRRMTGALVAVGQGRLS 244 Query: 215 STDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 L++ L+A+D +AP GL+ V+Y Sbjct: 245 VPQLKEILEARDTMAYPKNLVAPAHGLFLTRVDY 278 >gi|294783832|ref|ZP_06749154.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA] gi|294479644|gb|EFG27423.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA] Length = 246 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 13/243 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF----D 65 Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA +QV++F + Sbjct: 12 YDGSRYYGFQRQPDKVTVQGEIEKILKIVTKEDINLISAGRTDRGVHANQQVSNFYTSSN 71 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E +L +AL I IL++ VDK F+AR A R Y+Y I + P Sbjct: 72 IPVEKYKYLLTRAL------PKDIDILSVEEVDKNFNARHDAKMREYIYIISWEKNP--F 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLI 184 E + +D E ++ +G HDF FR C + IR I D+N F N + Sbjct: 124 EARYCKFVKNKIDVEKLKKIFSSFLGIHDFRNFRLSDCVSKITIREIYSIDINYFSENKL 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + +FL +Q+R VG+ V G +E L + L EGLY + + Sbjct: 184 KIYIRGSAFLKSQVRIMVGTALEVYYGNLPENHIELMLNDFSKDYKKNLVEAEGLYLNKI 243 Query: 245 EYS 247 YS Sbjct: 244 YYS 246 >gi|302342258|ref|YP_003806787.1| tRNA pseudouridine synthase A [Desulfarculus baarsii DSM 2075] gi|301638871|gb|ADK84193.1| tRNA pseudouridine synthase A [Desulfarculus baarsii DSM 2075] Length = 279 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 114/239 (47%), Gaps = 4/239 (1%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 YNG+G+ GWQ Q G +IQG +E+ + + G V + AGRTD+GVHA QVA F Sbjct: 43 YNGAGFAGWQIQARGRTIQGQVERELSRLCGHAVRLWAAGRTDAGVHAFGQVASFQTDSR 102 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 + +AL A L I + L + FHARF A ++Y Y + + P G Sbjct: 103 LEEGRMAQALAAMLP--PDIWLRRLGRAPEGFHARFDAAGKTYEYYLWPKARPGVFLDGL 160 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVN-SFGNLIEIR 187 W + LD E M A L+G D F + + P +R I V + G +I +R Sbjct: 161 CWPLACDLDMEAMARGAAFLLGEVDLAAFAAHSSEVEGPTVRRISEATVTPAEGGMILVR 220 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + FL +R+ VG+L +G + + + L A R GP APP GLY + Y Sbjct: 221 LSGSGFLRHVVRNVVGTLTQIGQHRLEPEAVGRMLAAGRRIYPGPKAPPGGLYLGQIYY 279 >gi|313205364|ref|YP_004044021.1| tRNA pseudouridine synthase a [Paludibacter propionicigenes WB4] gi|312444680|gb|ADQ81036.1| tRNA pseudouridine synthase A [Paludibacter propionicigenes WB4] Length = 251 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 119/246 (48%), Gaps = 7/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + Y G+ Y GWQ Q NG S+Q + +A+ + + + GAGRTD+GVHA VA Sbjct: 4 RYFIYFSYKGTAYHGWQMQPNGISVQEVLTRALCTILRTNLEIVGAGRTDAGVHAKLMVA 63 Query: 63 HFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD +P L LN++L ISI ++ V HARF AI R Y Y I T + Sbjct: 64 HFDF-ETALPSEFDLVAKLNSFL--PGDISIYKIAEVKPDAHARFDAISRRYEYHIFTNK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E A LD E M +AA+ L DFT+F +H + I H + Sbjct: 121 NVFKNE--LAVRESDKLDFEAMNLAAKTLTKFKDFTSFSKLHTDVKTNNCQIHHAEWTQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + A FL +R+ VG+L VG K + + + A++R + G P GLY Sbjct: 179 GDEWVFTIEADRFLRNMVRAIVGTLFEVGRRKMNTDEFATVIAAKNRCKAGVSVPAHGLY 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LVDIKY 244 >gi|298491424|ref|YP_003721601.1| tRNA pseudouridine synthase A ['Nostoc azollae' 0708] gi|298233342|gb|ADI64478.1| tRNA pseudouridine synthase A ['Nostoc azollae' 0708] Length = 275 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 122/250 (48%), Gaps = 13/250 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ ++Q IE AI + G V +HGAGRTD+GVHA Q+A Sbjct: 12 RVALVIQYRGTHFRGWQRQSCQRTVQEEIETAIATILGYHVTLHGAGRTDAGVHAAAQIA 71 Query: 63 HFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD +W V LN+YL I I + V+ +HARFSA+ R Y Y I Sbjct: 72 HFDATGFIPAHKWATV-----LNSYLP--PDILIRASASVNDFWHARFSAVSRRYRYTIY 124 Query: 118 TRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 T P +W LD ++ A + L+G+H F S + + Sbjct: 125 TEVLPNLFVNPFSWHYYYAPLDESVIQAALKPLLGKHHLAAFHRAGSARSHSWVEVQVAE 184 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G I I + A FL+ +R VG L +G G+ T + + + + R++ APP Sbjct: 185 CHRSGPFIHIEIQANGFLYGMVRLLVGMLVQLGSGQVTLDNFTEIWKEERREKVKYAAPP 244 Query: 237 EGLYFDSVEY 246 +GL VEY Sbjct: 245 QGLCLLRVEY 254 >gi|258647412|ref|ZP_05734881.1| tRNA pseudouridine synthase A [Prevotella tannerae ATCC 51259] gi|260852780|gb|EEX72649.1| tRNA pseudouridine synthase A [Prevotella tannerae ATCC 51259] Length = 256 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G Y GWQ+Q N S+Q + KAI + + + GAGRTD+ V+A R V Sbjct: 1 MRYFLYFSYDGGNYHGWQQQPNAISVQEVLNKAISTLLQSAISLVGAGRTDTSVNAKRMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +P LN L I++L++ V+K HARF A+ R+Y Y I ++ Sbjct: 61 AHFDFCCT-LPDKFTFRLNRLL--PPDIAVLDIKQVNKDAHARFDALSRTYHYYIYKKKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSF 180 P +L LD M AA+ L+ DFT+F +H + I + + + Sbjct: 118 PFKRHYATRYL--AELDYTAMNQAAKLLLQVEDFTSFSKLHTDTRTKICHVTKAEWIQEK 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L + A FL +R+ VG+L VG G+ + + K +Q ++R P E L+ Sbjct: 176 EDLWRFEITADRFLRNMVRAIVGTLIEVGRGRMSIEEFSKVIQQKNRCAAAESVPGEALF 235 Query: 241 FDSVEY 246 +++Y Sbjct: 236 LVNIKY 241 >gi|15672468|ref|NP_266642.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis Il1403] gi|281490978|ref|YP_003352958.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis KF147] gi|13878837|sp|Q9CI80|TRUA_LACLA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12723367|gb|AAK04584.1|AE006284_2 tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis Il1403] gi|281374736|gb|ADA64256.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis KF147] gi|326406013|gb|ADZ63084.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis CV56] Length = 253 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 130/256 (50%), Gaps = 17/256 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + L + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQKEIEKILTKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI--- 116 QV HFDL + V + + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDL-KGKVRDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENS 119 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-- 174 ITR +P + P L+ E M+ A LVG HDFT F + +RTI Sbjct: 120 ITR-SPFQRHSKAYFRYP--LNFERMQEAMSKLVGEHDFTGFTASGSSVDDKVRTIYQAE 176 Query: 175 ---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D +F + FL+ Q+R+ VG++ +G+ + + ++K L +++R G Sbjct: 177 IIRLDEENFKFIFR----GNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRDFAG 232 Query: 232 PLAPPEGLYFDSVEYS 247 P A PEGLY V+Y+ Sbjct: 233 PTAAPEGLYLKEVKYA 248 >gi|206901950|ref|YP_002250733.1| tRNA pseudouridine synthase A [Dictyoglomus thermophilum H-6-12] gi|238057728|sp|B5YDX5|TRUA_DICT6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206741053|gb|ACI20111.1| tRNA pseudouridine synthase A [Dictyoglomus thermophilum H-6-12] Length = 245 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 124/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI + + + Y G ++G+Q+Q ++QG +EK + L+ E + V GAGRTD+GVHAL Q Sbjct: 1 MINWKVELSYIGKDFWGFQKQPGKRTVQGELEKVLKLLFDEDIKVIGAGRTDAGVHALGQ 60 Query: 61 VAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F + + L K LN L I I + IVD FHAR+SA RR Y+Y I Sbjct: 61 VVNFKTKESKNFSCDKLYKVLNKLL--PGDIKIKKVEIVDDNFHARYSAKRRWYIYVIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + W I K LD + + ++A G HDF F I ++ + + F Sbjct: 119 NEEKNLFLRDYCWWINKPLDKDLLNLSANLFKGIHDFRNFCVIENYDNTNVEIYESFWYF 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ V A FL +R VGS+ VG K DLEK L+ + + AP G Sbjct: 179 K-EDLLIYFVSAPFFLRKMVRFIVGSMVEVGLKKKELEDLEKYLKDRKEERFSSPAPASG 237 Query: 239 LYFDSVEY 246 LY ++Y Sbjct: 238 LYLFKIDY 245 >gi|145225544|ref|YP_001136222.1| tRNA pseudouridine synthase A [Mycobacterium gilvum PYR-GCK] gi|145218030|gb|ABP47434.1| tRNA pseudouridine synthase A [Mycobacterium gilvum PYR-GCK] Length = 298 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 18/261 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + I Y+G+ + GW Q ++ G I+ A+ V V+ AGRTDSGVHA Q Sbjct: 19 FVRLRLDIAYDGTDFAGWATQAGQRTVAGVIDDALSTVFRTPVLTRAAGRTDSGVHATGQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLK------------ISDTISILNLSIVDKQFHARFSAI 108 VAH D+ + +P + + A +++ + + + F ARFSA+ Sbjct: 79 VAHADIPTDALPHAYPRTVRAGEPEFGPLVRRLGRMLTEDVRVRGIVRAAPGFDARFSAL 138 Query: 109 RRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 RR Y+YR+ T AP +E A + P+ LD + M AAQ+++G HDF F H Sbjct: 139 RRHYVYRLTT--APYGVEPAEARFVTAWPRPLDVDAMAGAAQNVLGLHDFAAF-CRHRDG 195 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ IR + D G+ I + V A +F +RS VG+L VG+ + T + L A+ Sbjct: 196 ATTIRELQRLDCVRDGDRISVHVSADAFCWNMVRSLVGALLAVGEHRRDDTWCVQLLHAR 255 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R AP GL V+Y Sbjct: 256 HRSSDFAAAPARGLTLVGVDY 276 >gi|86739325|ref|YP_479725.1| tRNA pseudouridine synthase A [Frankia sp. CcI3] gi|123737799|sp|Q2JFE6|TRUA_FRASC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|86566187|gb|ABD09996.1| tRNA pseudouridine synthase A [Frankia sp. CcI3] Length = 274 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 133/262 (50%), Gaps = 30/262 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 ++R + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA+ Sbjct: 5 LVRLRLDLSYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAVG 64 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + VP+ L + LN L + + I+ L+ F ARFSA+ R Y+YRI Sbjct: 65 QVAHVDLPDD-VPLGGLARRLNGVLDRA--VRIIGLAPAPPGFDARFSALSRRYVYRIT- 120 Query: 119 RQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIR 170 AP E R AW P+ LD M AA LVG HDF F C + ++ +R Sbjct: 121 -DAPYGAEPLRRFDTLAW--PRPLDVPAMAAAALFLVGEHDFAAF----CRRREGATTVR 173 Query: 171 TIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQ 225 T+ DV ++ V A +F H+ +R+ VG+L VG+G+ W + L + + Sbjct: 174 TLLRLDVLRRPEGVVVADVEADAFCHSMVRALVGALLAVGEGRKPPQWPAAVLHRGV--- 230 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R +AP GL V Y Sbjct: 231 -RDPAVTVAPAHGLTLVDVRYP 251 >gi|320530646|ref|ZP_08031695.1| tRNA pseudouridine synthase A [Selenomonas artemidis F0399] gi|320137097|gb|EFW29030.1| tRNA pseudouridine synthase A [Selenomonas artemidis F0399] Length = 258 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 127/243 (52%), Gaps = 6/243 (2%) Query: 8 IEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G+ Y G+QRQ ++Q +EK + V GE V + AGRTD+GVHA QV +F Sbjct: 12 LSYDGTRYHGFQRQSLPVVAVQNVLEKVLAEVCGEPVELAAAGRTDTGVHAYGQVVNF-F 70 Query: 67 VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +PV L +A+N L I+++ + F AR S+ ++YLYRI P Sbjct: 71 TDGRIPVAQLPRAVNGLLP--PDIAVMAAWEAGRDFSARHSSTGKAYLYRIERCTVPNPF 128 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SFGNLI 184 + AW I + LD MR + LVG HD+++FR+ SP+RT+D ++ G + Sbjct: 129 TRNYAWQIFRPLDVAAMRTVLRLLVGTHDYSSFRAAGGAPMSPVRTLDEIRLDEEEGGQL 188 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ + ++ VG G+ ++ + A DR+ P AP GLY V Sbjct: 189 SCYMHGNGFLYHMVRNIMSTVVHVGLGRISTDRFTEIFAAHDRRLASPTAPACGLYLLHV 248 Query: 245 EYS 247 +Y+ Sbjct: 249 DYA 251 >gi|239994150|ref|ZP_04714674.1| tRNA pseudouridine synthase A [Alteromonas macleodii ATCC 27126] Length = 242 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 111/226 (49%), Gaps = 12/226 (5%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL-----VREWVPVILCKALN 80 S+Q +EKA+ V E + V AGRTD+GVHA QV HF+ R W L Sbjct: 5 SVQEHLEKALSTVANEPIEVQCAGRTDAGVHATGQVVHFNCDAPRSERAWT-------LG 57 Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE 140 + +++++ V FHARFSA R Y Y I + A+ I + LD + Sbjct: 58 VNANLPNSVAVTWAKNVSDDFHARFSATHRRYRYVIHNAKMRPAILHSGVTHIHRELDEK 117 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 M +AAQ L+G DFT+FR+ CQ+ +P R + V G + I + A +FLH +R+ Sbjct: 118 KMHVAAQALLGEQDFTSFRAALCQSKTPFRNVTDVSVYRQGRYVIIDIRANAFLHHMVRN 177 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+L +G G+ + L +DR + A P GLY V Y Sbjct: 178 ITGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNGLYLVDVTY 223 >gi|6729002|gb|AAF26999.1|AC016827_10 putative tRNA pseudouridine synthase [Arabidopsis thaliana] Length = 298 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 131/255 (51%), Gaps = 14/255 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T E+ ++ GAGRTD+GVHA Sbjct: 17 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLI-GAGRTDAGVHAW 75 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 76 GQVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSASSKVYRYQIY 133 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHF 175 ++ A+ L+ MR AA VG+HDF+ F + + P++TI F Sbjct: 134 NDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRF 193 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR----KECG 231 DV G+L+++ V FL+ Q+R+ V L +G S + L+ +DR K Sbjct: 194 DVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTS 253 Query: 232 PLAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 254 LPASPHGLCLVSVKY 268 >gi|237721333|ref|ZP_04551814.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_2_4] gi|229449129|gb|EEO54920.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_2_4] Length = 260 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 118/240 (49%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA VAHFD Sbjct: 1 MAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLMVAHFDSD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + LN L ISI + V HARF A R+Y Y + T + P + Sbjct: 61 ELLDTTSVTDKLNRLLPPD--ISIYRVCRVRPDTHARFDATARTYKYYVTTSKYP--FNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 W + L+ E M AA+ L +DFT+F +H + I I H + + + Sbjct: 117 QYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQEEDATWVF 176 Query: 188 VV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L+ +VEY Sbjct: 177 TIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQALFLVNVEY 236 >gi|188997613|ref|YP_001931864.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium sp. YO3AOP1] gi|188932680|gb|ACD67310.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium sp. YO3AOP1] Length = 243 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 124/246 (50%), Gaps = 11/246 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + I Y G+ Y GWQRQKNG IQ IE + + E + + GAGRTD+GVHALRQVA+ Sbjct: 6 YKLEISYIGTNYNGWQRQKNGIGIQQVIEDLLSELLEEKITLIGAGRTDAGVHALRQVAN 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + + LNA K+ ISIL + V F+ARFSA ++YLY+I T+ P Sbjct: 66 FKTKKHKNTKTIYTYLNA--KLPRDISILKVEEVPLSFNARFSAKGKTYLYKINTKPDPF 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT-IDHFDVNSF-- 180 + AW K LD M + D ++ +A IR ID ++ + Sbjct: 124 LFK--LAWYYDKKLDLIKMVEGINLIKQYKDLSSL----AKAGDYIRKEIDLRELKLYFD 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I I + A FL +R G L +G G + +L+ ++ + APPEGLY Sbjct: 178 GKIITIEITASHFLRNMVRRIAGHLVALGRGSLSLEELKDIIEKKSPSHGKFTAPPEGLY 237 Query: 241 FDSVEY 246 +V Y Sbjct: 238 LKAVYY 243 >gi|313887179|ref|ZP_07820875.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica PR426713P-I] gi|312923408|gb|EFR34221.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica PR426713P-I] Length = 262 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 10/250 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA +A Sbjct: 7 RVFLEVAYDGTNYCGWQVQSRGVSVQSELERALSILFRQPISVTGAGRTDAGVHAYSMMA 66 Query: 63 HFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H DL P+ + + L L+ IS+ +++ V HARF A R Y Y I Sbjct: 67 HADLPIPHPPLAQIQRGLCGILR--GGISVRSVTPVIPTAHARFDATSRRYHYYISACSN 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-----DHFD 176 P + W D M A +H +G HDFT+F +H Q T+ + + Sbjct: 125 PFWGDY--CWERRTLPDMALMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQVE 182 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + V A FLH +R+ VG+L VG G+ T + + +Q++DR G AP Sbjct: 183 MPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQSEDRSLAGSAAPA 242 Query: 237 EGLYFDSVEY 246 L+F Y Sbjct: 243 RALFFVEATY 252 >gi|323345677|ref|ZP_08085900.1| tRNA pseudouridine synthase A [Prevotella oralis ATCC 33269] gi|323093791|gb|EFZ36369.1| tRNA pseudouridine synthase A [Prevotella oralis ATCC 33269] Length = 243 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+S+Q ++ A+ ++ + V V GAGRTD+GVHA Sbjct: 1 MQRYFVYFAYDGTAYHGWQVQPNGNSVQVELQNALSVLLRQPVEVVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD V L LN L IS+ + VD HARFSA+ R+Y Y + R+ Sbjct: 61 AAHFDFDTPVDEVQLAYKLNRLL--PKDISVDRVVAVDSSMHARFSAVSRTYHYYVHCRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTIDHFDVNS 179 P ++ ++ + LD M AQHL+ DF F H + + + R V Sbjct: 119 NP--FKRAYSYELHYQLDFRAMNEVAQHLLQVEDFGAFCKSHNDSKTTLCRVTRALWVQD 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG + + + K ++ ++R G P L Sbjct: 177 DADSWHFVITANRFLRNMVRAVVGTLIDVGRHRISKEEFIKIVERRNRTGAGESMPAHAL 236 Query: 240 YFDSVEY 246 + + ++Y Sbjct: 237 FLEDIKY 243 >gi|42522098|ref|NP_967478.1| pseudouridylate synthase I [Bdellovibrio bacteriovorus HD100] gi|51316639|sp|Q6MQH6|TRUA_BDEBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39574629|emb|CAE78471.1| pseudouridylate synthase I [Bdellovibrio bacteriovorus HD100] Length = 262 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 131/247 (53%), Gaps = 12/247 (4%) Query: 8 IEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+G+ GWQ+QK + S+ IE+A+ V E + + +GRTD+GVHAL QV HF Sbjct: 9 VAYDGTGFCGWQKQKPEDQISVAQVIEEALSKVFNEKITLFASGRTDAGVHALNQVCHFS 68 Query: 66 LVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 R+ P LC ALN++L S I I FHA SA ++Y Y I+ + P Sbjct: 69 THRKIDPNKKWDLCWALNSHLPPS--IVAKKAWIAPDDFHATLSATHKTYRYLIVNKPRP 126 Query: 123 LA-LEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 A L + W+ +P +D E+++ ++++L+G DF +F+S+ +R I D Sbjct: 127 SAHLNRYADWVRLP--IDIEHLQESSKYLLGNQDFKSFQSVGTPVPDTVREIYKADWEWR 184 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FL +R+ VG+ + + +++ + AQDR + GP AP +GL Sbjct: 185 KPGVMQFTITGSGFLKQMVRNIVGTSLFLERKGLDPSKMQEIIAAQDRMKAGPPAPAQGL 244 Query: 240 YFDSVEY 246 Y V Y Sbjct: 245 YLMKVYY 251 >gi|159904194|ref|YP_001551538.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9211] gi|226741290|sp|A9BCM2|TRUA_PROM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|159889370|gb|ABX09584.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9211] Length = 289 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 127/247 (51%), Gaps = 6/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+YNGSG+ GWQRQK G+S+Q +E+A+ L + + V AGRTDSGVHA QV Sbjct: 17 RIALLIQYNGSGFCGWQRQKEGNSVQSILEEAVSSLDPFQPIKVVAAGRTDSGVHASGQV 76 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD ++P ALN ++ I + ++ +HA FSA R Y Y I Sbjct: 77 AHFD-CSGFIPANRWAAALNG--RLPKAIRVRYSALRPITWHACFSATYRRYRYTIYNGC 133 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P W + LD M +A Q + G HDFT F+ + + T++ + Sbjct: 134 KPNLFLSPWCWHRYQFRLDENLMNLALQGIKGFHDFTAFQRAGSNRPNALTTVEDVHLFR 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ I + A FL+ +R VG L VG+ + + + E+ + + R+E APP GL Sbjct: 194 QGDLVSIDIQATGFLYGMVRLLVGQLVAVGEHRISVAEFERRWKLKLREEVREAAPPNGL 253 Query: 240 YFDSVEY 246 V Y Sbjct: 254 SLIRVGY 260 >gi|300814956|ref|ZP_07095184.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300510926|gb|EFK38198.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 243 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 118/239 (49%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y G+Q Q +I+G + KAI + ++ AGRTD GVHAL Q +F Sbjct: 7 VTYDGTNYHGYQIQNKLKTIEGELSKAINDTLKKETKIYSAGRTDRGVHALGQYVNFYTD 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L + +N +L D IS+++ V FHARFSA + Y Y + + A+ Sbjct: 67 TTIDLGNLPRVINFHL--PDDISVISAKEVPFDFHARFSAREKIYRYVVYNNKYRNAIYH 124 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 RA+ P SLD M + ++L+G+ DF +F IRTI V I Sbjct: 125 NRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDNKFIYFD 184 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +SFL IR +G+ +G GK +++ L+ Q+RK GP AP GLY ++ Y Sbjct: 185 FQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYLMNILY 243 >gi|110737769|dbj|BAF00823.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana] Length = 323 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 131/255 (51%), Gaps = 14/255 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T E+ ++ GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLI-GAGRTDAGVHAW 100 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 101 GQVAHFVTPFNYTSLDSFHAALNGLLP--KDIRVRELSAAVPEFHARFSASSKVYRYQIY 158 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHF 175 ++ A+ L+ MR AA VG+HDF+ F + + P++TI F Sbjct: 159 NDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRF 218 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR----KECG 231 DV G+L+++ V FL+ Q+R+ V L +G S + L+ +DR K Sbjct: 219 DVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTS 278 Query: 232 PLAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 279 LPASPHGLCLVSVKY 293 >gi|332665403|ref|YP_004448191.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] gi|332334217|gb|AEE51318.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] Length = 249 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 127/252 (50%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG+ YFGWQRQ S+Q ++E +I + G + + G GRTD+GVHA + Sbjct: 1 MQRYFIELAYNGTQYFGWQRQPGKISVQQTLEDSINTILGTELEITGCGRTDTGVHARQY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E+ P + LN +L I++ + V+ + HARF A RSY Y + R+ Sbjct: 61 FAHFDFEGEF-PAEFVRRLNKFL--PKDIAVYQIIAVEPEAHARFDAYERSYEYHLSFRK 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P + + D M+ AA L+ +F F C+++ +T+ S Sbjct: 118 NPFTEHLAYFYPYVQQPDPVLMQDAAAFLLQYQEFEPF----CKSNHDAKTMVCKLTRSE 173 Query: 180 -FGNLIEIRVV----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +L E R V + FL +R VG VG G+ + +L+ A++ Q R + A Sbjct: 174 WIFDLKEQRAVFHITSNRFLRGMVRLIVGMCIGVGTGQISMEELKTAMEQQSRLKKATSA 233 Query: 235 PPEGLYFDSVEY 246 PPEGLY ++Y Sbjct: 234 PPEGLYLGGIKY 245 >gi|311111942|ref|YP_003983164.1| tRNA pseudouridine synthase A [Rothia dentocariosa ATCC 17931] gi|310943436|gb|ADP39730.1| tRNA pseudouridine synthase A [Rothia dentocariosa ATCC 17931] Length = 327 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 130/271 (47%), Gaps = 35/271 (12%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y G+ + GW RQ N ++QG +E A+ LV V AGRTD+GVHA Q H D+ E Sbjct: 41 YEGTWFSGWARQPNLVTVQGVLEDALELVLRAHHRVTVAGRTDAGVHAQAQTIHLDIAAE 100 Query: 70 -WVPVI-----------LCKALNAYLK-------------------ISDTISILNLSIVD 98 W + L + ++ LK + ++ + + V Sbjct: 101 TWQKLTGRDGLADPAESLKRKVSGALKRTLAQAEHTLGIPERMRGLLQGSLVLHQVQPVP 160 Query: 99 KQFHARFSAIRRSYLYRIITRQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 + F ARFSA R Y YRI+ Q +P L + AW IP+SLD E++ AA L G HDF Sbjct: 161 QDFDARFSATGRRYTYRILDGQGSSPDPLRRAYAWCIPESLDLEDLNKAAHELTGLHDFL 220 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +F + ++ IR + + + +IE V A +F H +RS +G+L L G GK T Sbjct: 221 SFCKPR-EGATTIRELRRIYLTRHDDGVIEATVEADAFCHHMVRSLIGALVLYGTGKRTQ 279 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 T L + L+ R +APP GL ++Y Sbjct: 280 TWLRERLENPQRDASLIMAPPHGLALAHIDY 310 >gi|30680075|ref|NP_187351.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|119360081|gb|ABL66769.1| At3g06950 [Arabidopsis thaliana] gi|332640958|gb|AEE74479.1| tRNA pseudouridine synthase A [Arabidopsis thaliana] Length = 323 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 131/255 (51%), Gaps = 14/255 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T E+ ++ GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLI-GAGRTDAGVHAW 100 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 101 GQVAHFVTPFNYTSLDSFHAALNGLLP--KDIRVRELSAAVPEFHARFSASSKVYRYQIY 158 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHF 175 ++ A+ L+ MR AA VG+HDF+ F + + P++TI F Sbjct: 159 NDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRF 218 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR----KECG 231 DV G+L+++ V FL+ Q+R+ V L +G S + L+ +DR K Sbjct: 219 DVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTS 278 Query: 232 PLAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 279 LPASPHGLCLVSVKY 293 >gi|149196320|ref|ZP_01873375.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155] gi|149140581|gb|EDM28979.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155] Length = 276 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+++G+ +FGWQ Q + ++Q IEKA+ L + + G+GRTD+GVHA Sbjct: 1 MNSYKLSIQFDGTTWFGWQSQNDFEAVQEQIEKALNTLYNCSEIKIDGSGRTDAGVHAFG 60 Query: 60 QVAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 A F + ++ L K LNA L +S I I + + FHARFS I ++Y+Y I Sbjct: 61 LCATFTEPKISKFTSDTLRKGLNALLPVS--IRIRSALQCETDFHARFSCIGKTYVYFID 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----RSIHCQASSPIRTID 173 + +W + K L+ E MR + QHL G+HDF+ F +++ A IRT+ Sbjct: 119 NSTTSSPILAPYSWHMRKKLNREKMRQSLQHLEGKHDFSAFTVDRKNLQGHA---IRTVF 175 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 ++ G+++ + FL+ +RS G + VG AL++ R E G Sbjct: 176 KAELIEIGHIVALLFTGDGFLYRMVRSMAGEVVNVGMEFQNPQHTLDALESHQRSEAGVT 235 Query: 234 APPEGLYFDSVEYS 247 AP +GL+ YS Sbjct: 236 APAKGLFLGQCYYS 249 >gi|19704921|ref|NP_602416.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|42559836|sp|Q8R601|TRUA_FUSNN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19712818|gb|AAL93715.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 247 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 13/242 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF----D 65 Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV++F + Sbjct: 14 YDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHANHQVSNFYTSSN 73 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E +L +AL + I IL++ VD+ F+AR +A R Y+Y I + P Sbjct: 74 IPIEKYKYLLTRAL------PNDIDILSVEEVDENFNARHNAKMREYIYIISWEKNP--F 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLI 184 E + + + E + +G HDF FR C + +R I +V FG N I Sbjct: 126 EARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVKYFGENKI 185 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + +FL +Q+R VG+ + G+ + L ++ L EGLY + + Sbjct: 186 KIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAEGLYLNKI 245 Query: 245 EY 246 EY Sbjct: 246 EY 247 >gi|283781972|ref|YP_003372727.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068] gi|283440425|gb|ADB18867.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068] Length = 285 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 10/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + GWQ Q N ++Q +EKA+ +TG +GRTD+GVHAL Q Sbjct: 1 MRTFKLTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITGVRSRFVASGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F P L K LNA K+ D I I ++ V FH A+R+ Y Y + + Sbjct: 61 VAAFSSETGIDPAGLLKGLNA--KVPDDIFIFDVVEVPLAFHPIRDAVRKRYRY--VVQD 116 Query: 121 APLA--LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 PL ++ AW + + LD + M A++ L+G HDF +F++ + R + V Sbjct: 117 GPLRDIFDRQYAWHVRQPLDEQAMLEASRLLLGEHDFASFQTSGSSRLTTERNVLDISVE 176 Query: 179 SFGNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + V A FL +R+ VG+L VG G + L+++DR+ G A Sbjct: 177 RVDGARTSRVHVEVEADGFLFNMVRNIVGTLVEVGKGTRPVAWTREVLESRDRRRAGMTA 236 Query: 235 PPEGLYFDSVEYS 247 P +GL+ V Y Sbjct: 237 PAQGLFMIGVHYD 249 >gi|296329175|ref|ZP_06871676.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153531|gb|EFG94348.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 247 Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 13/242 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF----D 65 Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV++F + Sbjct: 14 YDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHANHQVSNFYTSSN 73 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E +L +AL + I IL++ VD+ F+AR +A R Y+Y I + P Sbjct: 74 IPIEKYKYLLTRAL------PNDIDILSVEEVDENFNARHNAKMREYIYIISWEKNP--F 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLI 184 E + + + E + +G HDF FR C + +R I +V FG N I Sbjct: 126 EARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVKYFGENKI 185 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + +FL +Q+R VG+ + G+ + L ++ L EGLY + + Sbjct: 186 KIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAEGLYLNKI 245 Query: 245 EY 246 EY Sbjct: 246 EY 247 >gi|289550174|ref|YP_003471078.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis HKU09-01] gi|289179706|gb|ADC86951.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis HKU09-01] Length = 267 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q G ++Q EK + + V +H + RTD GVHAL Q Sbjct: 1 MRILVNICYQGSNFLGFQIQNQGRTVQQQFEKILKRMHRHDVRIHPSSRTDRGVHALEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + + VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELKIADSQWQYAMNSAL--PDDIYVKEVKQVDSDFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G +P+ L+ E M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 KNPFESGLKTYVPQQLNIERMNEAAQKFIGTHDFTGFCSQKTEVESKVRTLYQSEIEMTT 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R + L VG G + ++ L+ ++R AP EGLY Sbjct: 179 YGFDYIVTGSGFLYNMVRVLMAFLIEVGKGNRSPEEVTALLEQKNRDNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|292670303|ref|ZP_06603729.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541] gi|292648034|gb|EFF66006.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541] Length = 260 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 6/242 (2%) Query: 8 IEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 I Y+G+ Y G+QRQ ++Q ++E A+ V GE V + AGRTD+GVHA QV +F Sbjct: 13 IAYDGTRYHGFQRQSPPVVAVQNALEAALAEVCGETVELAAAGRTDAGVHACGQVVNF-F 71 Query: 67 VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +P L +A+N L I++ + + F AR SA ++Y+YR+ P Sbjct: 72 TDGRIPTERLPRAVNGLLP--PDIAVTDAWEAARDFSARHSAKGKAYVYRMEQCTVPNPF 129 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LI 184 + AW I + LD E MR A LVG HD+++FR+ SP+RTID + G + Sbjct: 130 TRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAAGGAPMSPVRTIDEIRLEDEGEGRL 189 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R+ + ++ VG + + + A+DR+ P AP GLY V Sbjct: 190 SCYLHGNGFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASPTAPACGLYLLHV 249 Query: 245 EY 246 +Y Sbjct: 250 DY 251 >gi|296168687|ref|ZP_06850436.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896596|gb|EFG76237.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 302 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 129/263 (49%), Gaps = 22/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A+ + + + AGRTD+GVHA QV Sbjct: 27 VRLRLDIAYDGTEFAGWATQAGQRTVAGVLDEALTTLFRAPMRLRAAGRTDTGVHATGQV 86 Query: 62 AHFDLVREWVP--------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P + L + L +L + +L ++ F ARFSA Sbjct: 87 AHVDVPPDALPNAYPRAPRVGEPEFLPLVRRLGRFLPTD--VRVLGIARAPAGFDARFSA 144 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 +RR Y YR+ T AP +E RA + P+ LD + M A++ LVG HDF F H Sbjct: 145 LRRHYTYRLST--APYGVEPQRARYVTAWPRPLDVDAMAAASRDLVGLHDFAGF-CRHRP 201 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + D + G LI V A +F + +RS VG+L VG+ + + L A Sbjct: 202 NATTIRDLQGLDWSRDGELITAHVTADAFCWSMVRSLVGALLAVGEHRRPVSWCRGLLTA 261 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 R APP GL V+Y Sbjct: 262 TSRSSDFAAAPPHGLTLVGVDYP 284 >gi|315445896|ref|YP_004078775.1| pseudouridylate synthase I [Mycobacterium sp. Spyr1] gi|315264199|gb|ADU00941.1| pseudouridylate synthase I [Mycobacterium sp. Spyr1] Length = 291 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 127/261 (48%), Gaps = 18/261 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + I Y+G+ + GW Q ++ G I+ A+ V ++ AGRTDSGVHA Q Sbjct: 12 FVRLRLDIAYDGTDFAGWATQAGQRTVAGVIDDALSTVFRTPMLTRAAGRTDSGVHATGQ 71 Query: 61 VAHFDLVREWVPVILCKALNAYLK------------ISDTISILNLSIVDKQFHARFSAI 108 VAH D+ + +P + + A +++ + + + F ARFSA+ Sbjct: 72 VAHVDIPTDALPHAYPRTVRAGEAEFGPLVRRLGRMLTEDVRVRGIVRAAPGFDARFSAL 131 Query: 109 RRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 RR Y+YR+ T AP +E A + P+ LD + M AAQ+++G HDF F H Sbjct: 132 RRHYVYRLTT--APYGVEPSEARFVTAWPRPLDVDAMAGAAQNVLGLHDFAAF-CRHRDG 188 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ IR + D G+ I + V A +F +RS VG+L VG+ + T + L A+ Sbjct: 189 ATTIRELQRLDCVRDGDRISVHVSADAFCWNMVRSLVGALLAVGEHRRDDTWCVQLLHAR 248 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R AP GL V+Y Sbjct: 249 HRSSDFAAAPARGLTLVGVDY 269 >gi|307154816|ref|YP_003890200.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7822] gi|306985044|gb|ADN16925.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7822] Length = 284 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ N ++Q IE AI V G + +HGAGRTD+GVHA QVA Sbjct: 12 RVALVIQYLGTHFHGWQRQPNRRTVQEEIETAIAQVLGYPITLHGAGRTDAGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + P LN+ ++ D I + V +HARFSA+ R Y Y I T + P Sbjct: 72 HFDQMSLIPPYRWATILNS--RLPDDIVVRASHKVCDTWHARFSALWRRYRYTIYTDKQP 129 Query: 123 LALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K +W + E+ M+ A + L+G+H F + + + G Sbjct: 130 NLFVKPFSWHYYQYPLSESLMQAALEPLLGKHHLAAFHRANSARTHSWVEVQAVQCYRSG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R +G L VG+ + + ++ + Q R+E AP +GL Sbjct: 190 PFIHVEIQANGFLYGMVRLLMGMLIEVGNQQRSLSEFTNIWKNQRREEVKYAAPAKGLCL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 LRVGYP 255 >gi|86132219|ref|ZP_01050814.1| Pseudouridylate synthase [Dokdonia donghaensis MED134] gi|85817138|gb|EAQ38321.1| Pseudouridylate synthase [Dokdonia donghaensis MED134] Length = 263 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 120/249 (48%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G Y GWQRQ N ++Q +IEKA+ + + V++ GAGRTD+GVHA + Sbjct: 8 VRYFIELSYFGKDYHGWQRQPNAVTVQETIEKALSTILRKPVLIMGAGRTDAGVHATQMY 67 Query: 62 AHF----DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 AHF DL + L LN +L I+I + V + H RF A RSYLYRI Sbjct: 68 AHFDWDDDLSLDNKLRNLTYKLNRFLPPD--IAIDRIFNVRDEAHTRFDATSRSYLYRIA 125 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+ P + E+ A I +D M AA L+ DF F + ++ + I Sbjct: 126 KRKNPFSTEQAHA--IAYDIDLSLMNEAAAALLDYSDFECFSKSKTEVNTYLCDITRAQW 183 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + A FL +R+ VG+L +G GK + + ++ + R G P Sbjct: 184 LETEDEYHFHITANRFLRNMVRAIVGTLLEIGQGKKPVSWIHDVVKGKSRSRAGSSVPGH 243 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 244 GLYLTEIIY 252 >gi|213962633|ref|ZP_03390894.1| tRNA pseudouridine synthase A [Capnocytophaga sputigena Capno] gi|213954628|gb|EEB65949.1| tRNA pseudouridine synthase A [Capnocytophaga sputigena Capno] Length = 250 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y GWQ Q S+Q +E+ + + + V GAGRTDSGVHA + Sbjct: 1 MRYFIELSFFGKNYHGWQSQPKAISVQEVLEQGLSTILRTPISVVGAGRTDSGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V E +P LNA+L I++ N+ + H RF A++R+Y Y I T++ Sbjct: 61 AHFD-VTEPLPTNFVHRLNAFL--PKDIAVHNIYEMKPNAHTRFDALKRTYQYHISTQKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + A +L+ M AAQ L+ DF F H + I I Sbjct: 118 VFAYD--YAMFFTHTLNIAIMNEAAQILLDYSDFQCFSKTHTDVKTFICKIYKAHWEKID 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++A FL +R+ VG+L VG K + TD E + +++R + G P GL+ Sbjct: 176 KQLVFTIIADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIILSKNRSKAGASVPACGLFL 235 Query: 242 DSVEY 246 +EY Sbjct: 236 THIEY 240 >gi|319901295|ref|YP_004161023.1| tRNA pseudouridine synthase A [Bacteroides helcogenes P 36-108] gi|319416326|gb|ADV43437.1| tRNA pseudouridine synthase A [Bacteroides helcogenes P 36-108] Length = 250 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 115/248 (46%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGESVQECLMKALATLLRCDVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSAAPLDAAFMVDKLNRLLPPD--ISVYRLRAVKSDAHARFDATTRMYKYYVTTAK 118 Query: 121 APLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + R + P D E M AAQ L DFT+F +H + I H Sbjct: 119 IPFDRWYRCRLFQTP---DFERMNEAAQTLYDYTDFTSFSKLHTDVKTNNCKIMHAVWTQ 175 Query: 180 FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + A FL +R+ VG+L VG GK T + ++ QDR + G P Sbjct: 176 QDEVTWVFTIKADRFLRNMVRAIVGTLLEVGRGKLTVEGFRRVIEQQDRCQAGTSVPGNA 235 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 236 LFLVDVSY 243 >gi|313905811|ref|ZP_07839169.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] gi|313469325|gb|EFR64669.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] Length = 252 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 124/250 (49%), Gaps = 9/250 (3%) Query: 4 YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVHAL 58 Y M I Y+G+ +FGW+ Q K +IQG +E + + G + V V GAGRTD+GVHA Sbjct: 5 YKMKISYDGTRFFGWEHQPKQEMTIQGKLETVLSRMVGAPEDQPVTVIGAGRTDAGVHAK 64 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 +A+ L + +N YL + IS+ L + +FH+RF A ++Y Y Sbjct: 65 EMIANVLLDTRMSEEEIQTYMNRYL--PEDISVNELKVCADRFHSRFKAKGKTYCYSFWY 122 Query: 119 RQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + ++ ++ K + + MR AA+ +VG DF +F S +R +D + Sbjct: 123 ADGGVRPTFDRKYVTVLDKRPNVDRMRKAAEEIVGMRDFKSFCGNSHMKKSTVRLVDSIE 182 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I I + FL +R G+L VG GK T + + ++A+DRK GP AP Sbjct: 183 FKIRGPYIRIYIHGSGFLQNMVRIIAGTLLEVGYGKRTPESIAELIEARDRKLAGPTAPA 242 Query: 237 EGLYFDSVEY 246 +GL V+Y Sbjct: 243 QGLCLIKVDY 252 >gi|300173999|ref|YP_003773165.1| tRNA pseudouridine synthase A [Leuconostoc gasicomitatum LMG 18811] gi|299888378|emb|CBL92346.1| tRNA pseudouridine synthase A [Leuconostoc gasicomitatum LMG 18811] Length = 255 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 134/258 (51%), Gaps = 14/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLV----TGEIVVVHGAGRT 51 M RY I+ Y+GS +FG+Q Q KNG ++QG + KA+ + T I VV GA RT Sbjct: 1 MPRYKAIVSYDGSDFFGFQVQTKNGVERQRTVQGELNKAVNQMAKNPTPAIKVV-GASRT 59 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D+GVHA QV HFDL + + + K LN L I I ++ V FHARF+ + Sbjct: 60 DTGVHAFGQVVHFDLPFDINVIGVRKGLNTLL--PKDIIIQSVDQVANDFHARFNTHAKR 117 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y+YR+ T+ ++ LD E ++IA L+G HDF +F + Q + IRT Sbjct: 118 YVYRVSTQDFTDPFKRFYTGHFQWQLDVERIKIALPDLLGEHDFASFAASGNQTITTIRT 177 Query: 172 IDHFD--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 I D VN+ + +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 178 ITRADLKVNNDEQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIIRLIAVKDREQ 237 Query: 230 CGPLAPPEGLYFDSVEYS 247 AP GLY D + Y Sbjct: 238 ARFTAPASGLYLDEIYYD 255 >gi|331269740|ref|YP_004396232.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] gi|329126290|gb|AEB76235.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] Length = 245 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I+Y+G+ Y GWQ+ N ++IQ +E + + GE + + +GRTD+GVHA Q+A+F Sbjct: 6 LTIQYDGTRYKGWQKLGNTDNTIQCKVENVLNELLGEEISLIASGRTDAGVHANMQIANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + K YL I + N++ + FH+R++ ++ Y Y I Sbjct: 66 KTDSNVSNDTILKHCYKYL--PHDIVVTNVADASENFHSRYNVKKKIYTYNICNNPVHDV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + ++ + ++LD + M+ A++ +G HDF +F ++ + S ++TID N I Sbjct: 124 FTRKYSYHVKETLDIKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTIDSISFKKKDNNI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E+ FL+ IR VGSL VG GK T DLE + +DR AP GL V Sbjct: 184 EVIFTGNGFLYKMIRILVGSLINVGLGKLTIEDLENIMNEKDRSIAPETAPAHGLILTEV 243 Query: 245 EY 246 +Y Sbjct: 244 KY 245 >gi|281355314|ref|ZP_06241808.1| tRNA pseudouridine synthase A [Victivallis vadensis ATCC BAA-548] gi|281318194|gb|EFB02214.1| tRNA pseudouridine synthase A [Victivallis vadensis ATCC BAA-548] Length = 272 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 6/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 RY + I Y+G+ Y GWQ Q + ++Q +++ + + G+ + + G+ RTD+GVHA R Sbjct: 13 RYLLEIAYDGTNYSGWQIQPHRVAVQQRVQEILTKMYNGQPIHLIGSSRTDAGVHAQRFA 72 Query: 62 A-HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A + VR +P + +A+N ++ I + + V +FHAR+ A+ ++Y Y ++ Sbjct: 73 ASYLTPVRPDIPTDKILRAVNR--QLPGDIKLRTVREVPLEFHARYDALGKAYTY-VLNL 129 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P W +D E +R A+Q L G HD+++F +RTI DV Sbjct: 130 GDPSPFTDRYTWRPIHRMDVEKIRAASQVLTGTHDYSSFVVERSLIDEAVRTIYRIDVQE 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG + V FL+ IR +G+L+ G GK + + + L+A DR APP GL Sbjct: 190 FGQFCCVTFVGNGFLYKMIRCLMGTLEAAGAGKLSPEAVRRILEACDRTVAPETAPPNGL 249 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 250 FLMKVFYT 257 >gi|329965278|ref|ZP_08302208.1| tRNA pseudouridine synthase A [Bacteroides fluxus YIT 12057] gi|328523298|gb|EGF50398.1| tRNA pseudouridine synthase A [Bacteroides fluxus YIT 12057] Length = 288 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 117/245 (47%), Gaps = 5/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA VA Sbjct: 31 RYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLMVA 90 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + LN L IS+ +L V + HARF A R Y Y + T + P Sbjct: 91 HFDSETPLDVTFMADKLNRLL--PPDISVYSLRAVKPEAHARFDATARMYKYYVTTAKVP 148 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + R L ++ D E M AA+ L DFT+F +H + I H Sbjct: 149 FN-RRYRCRLF-QTPDFERMNEAAKTLFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQLDE 206 Query: 183 LIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V A FL +R+ VG+L VG GK T + ++ +DR G P L+ Sbjct: 207 VTWVFTVQADRFLRNMVRAIVGTLLEVGRGKLTVEGFRRVIEQKDRCRAGTSVPGNALFL 266 Query: 242 DSVEY 246 V Y Sbjct: 267 VDVAY 271 >gi|304438671|ref|ZP_07398609.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368320|gb|EFM22007.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 275 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 6/245 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y+G+ Y G+QRQ ++Q +E A+ V GE V + AGRTD+GVHA QV + Sbjct: 10 ALKVAYDGTNYHGFQRQTPPIRAVQNVLEAALAQVCGETVELASAGRTDAGVHAYGQVVN 69 Query: 64 FDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +P L +A+N L I + + F AR SA ++Y+YR+ + P Sbjct: 70 F-FTDGRIPTERLPRAVNGLLPPD--IVVSEAWEAARDFSARHSATGKAYVYRMKECRVP 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG- 181 + AW I + LD + MR A L G HD+++FR+ SP+RT+D + + G Sbjct: 127 DPFTRSYAWQIFQPLDYDAMRAALHLLEGTHDYSSFRAAGGAPMSPVRTLDTIRLTAEGE 186 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + FL+ +R+ V + VG G+ + + A+DR+ P AP GLY Sbjct: 187 GRLSLYIHGTGFLYHMVRNIVSTAVAVGTGRISKDRFAEIFAARDRRLAPPTAPAGGLYL 246 Query: 242 DSVEY 246 +V+Y Sbjct: 247 LAVDY 251 >gi|303237649|ref|ZP_07324209.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN] gi|302482101|gb|EFL45136.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN] Length = 255 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 127/270 (47%), Gaps = 41/270 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG S+Q +EKA+ + + V GAGRTD+GVHA Sbjct: 1 MQRYFIKFSYDGTNYHGWQIQPNGISVQEVLEKALSTLLRTKMSVTGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAHFD W I + L L + +S++++ V+ + HARFSA R+Y Y + Sbjct: 61 VAHFD----WEAPIDGQQLAYKLNRMLPRDVSVISVEAVENELHARFSATSRTYHYYMHR 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P + + ++ +P LD E M AA++L+G DF F C+A +T Sbjct: 117 GRNPFS--RAYSYEMPYELDFERMNEAAKYLIGERDFKCF----CKAGGDNKT------- 163 Query: 179 SFGNLIEIR----------------------VVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + NL E R + A FL +R+ VG+L VG G+ T Sbjct: 164 TICNLTEARWQHCNTEIAIHEAEKAEEWCFVITANRFLRNMVRAVVGTLVEVGRGRITID 223 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + K + R + G P L+ V Y Sbjct: 224 EFRKIVDNGTRSDAGESMPGNALFLWDVTY 253 >gi|307610015|emb|CBW99548.1| transfer RNA-pseudouridine synthase I [Legionella pneumophila 130b] Length = 253 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 12/204 (5%) Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSI-----VDKQFH 102 AGRTD+GVHA QV HFD ++ +++ A++ ++T ++ + + + FH Sbjct: 38 AGRTDTGVHATNQVIHFDCEKD-------RSIRAWIHGANTFLPKDICVKWGKEMPENFH 90 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 AR+SA+ R Y Y I L +G + LD M+ Q L+G +DFT+FRS+ Sbjct: 91 ARYSAVSRRYRYVIYNGAIRPGLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVE 150 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 CQ+++P+R I V G+L+ + + A +FLH +R+ G L VG GK ++ L Sbjct: 151 CQSNTPMRNIHQLQVTRHGDLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVL 210 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 A+DRK AP GLY V Y Sbjct: 211 NAKDRKLGAETAPSYGLYLVQVTY 234 >gi|159901453|ref|YP_001547700.1| tRNA pseudouridine synthase ACD [Herpetosiphon aurantiacus ATCC 23779] gi|159894492|gb|ABX07572.1| tRNA pseudouridine synthase A [Herpetosiphon aurantiacus ATCC 23779] Length = 272 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 11/248 (4%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + EY G+ + G Q Q G ++Q +E A +T E AGRTD+GVHAL QVAH Sbjct: 6 ALCFEYLGTAFCGSQWQPGGRAVQTELETAWQRLTSETGRWIFAGRTDAGVHALAQVAHI 65 Query: 65 --DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 D R + KA+NA IS+ + FHARFSA +R+Y Y + AP Sbjct: 66 VSDTPRSLD--TIAKAINAI--TPPDISVHEAWEMPTGFHARFSARQRTYRYVFDSAPAP 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS--- 179 A GR + LD M+ A L+G HDF F + S+ RT + Sbjct: 122 SATLSGRVLRLDHQLDWAAMQAALDTLIGTHDFAAFAGAGHEGST-TRTCMLAQLRPAEW 180 Query: 180 FGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + + A +FL +R+ VG+L +VGDG+ + + + ++DR+ GP APP+G Sbjct: 181 LGRPVTVLHLQANAFLKHMVRNIVGTLLMVGDGRLSLEAWQAIIASRDRRNAGPTAPPQG 240 Query: 239 LYFDSVEY 246 LY +S+ Y Sbjct: 241 LYLESIGY 248 >gi|269122416|ref|YP_003310593.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386] gi|268616294|gb|ACZ10662.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386] Length = 244 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 117/241 (48%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ EY+GS + G+QRQ N ++QGSIE+ I E V + +GRTD GVHAL QV++F Sbjct: 6 IVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNEEVNLLSSGRTDKGVHALGQVSNFF 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + P I+ LN L S I + + D FHARFSA R+YLY + + Sbjct: 66 MEKSISPDIIKGILNRAL--SGKIRVTDAKEADSDFHARFSAKTRTYLYIMKLKDEITPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E + + E ++ + +GRH+F +FR +P R I++ + Sbjct: 124 ESSYVSALDGKIIPEKLQKIMEPFIGRHNFDSFRKKDKDNKNPEREINNIRCYEEDKRLF 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + +SFL T IR +GS V K + L D LAP EGLY V Sbjct: 184 IEIEGKSFLKTMIRIMIGSALAVYFEKRNPDYICDKLDNPDSDGEKILAPSEGLYLYKVN 243 Query: 246 Y 246 Y Sbjct: 244 Y 244 >gi|224538364|ref|ZP_03678903.1| hypothetical protein BACCELL_03255 [Bacteroides cellulosilyticus DSM 14838] gi|224519993|gb|EEF89098.1| hypothetical protein BACCELL_03255 [Bacteroides cellulosilyticus DSM 14838] Length = 279 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 117/248 (47%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + +A+ + V V GAGRTD+GVHA Sbjct: 29 MQRYFIYLAYDGTAYHGWQIQPNGDSVQECLMRALATLMRREVEVIGAGRTDAGVHASLM 88 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN L IS+ L V HARF A R Y Y + T + Sbjct: 89 VAHFDSDEPLDTAFFTDKLNRLLPPD--ISVYRLRAVKPDAHARFDATARMYKYYVTTAK 146 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +P + + R + P D E M AA+ L DFT+F +H + I H Sbjct: 147 SPFNRQYRCRLFQTP---DFERMNEAARSLFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQ 203 Query: 180 FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++ + + A FL +R+ VG+L VG GK T + ++ +DR + G P Sbjct: 204 IDDVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVDGFRRVIEQKDRCKAGTSVPGNA 263 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 264 LFLVDVTY 271 >gi|28377870|ref|NP_784762.1| tRNA pseudouridine synthase A [Lactobacillus plantarum WCFS1] gi|254556054|ref|YP_003062471.1| tRNA pseudouridine synthase A [Lactobacillus plantarum JDM1] gi|308180048|ref|YP_003924176.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258756|sp|Q88XU9|TRUA_LACPL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28270703|emb|CAD63609.1| pseudouridylate synthase A [Lactobacillus plantarum WCFS1] gi|254044981|gb|ACT61774.1| tRNA pseudouridine synthase A [Lactobacillus plantarum JDM1] gi|308045539|gb|ADN98082.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 262 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 128/250 (51%), Gaps = 7/250 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 RY +++ Y+G+ + G+QRQ + +++ + KA+ + E +V++GAGRTD+GVHA Sbjct: 4 RYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAFG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFDL E P + + LN+ L + DTI + +SIV FHAR+ + + Y YR Sbjct: 64 QTLHFDLPYEINPEGVRRGLNSMLPM-DTI-VKAVSIVPNDFHARYDTVGKRYWYRAYQN 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + D + ++ A L GRHDF+TF + QA +R I + Sbjct: 122 EFVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWA 181 Query: 180 FGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + EI+ FL+ Q+R V L +G G+ + L A+DR++ AP Sbjct: 182 LPDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPAA 241 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 242 GLYMKKVYYE 251 >gi|300767857|ref|ZP_07077767.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494842|gb|EFK30000.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 273 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 128/250 (51%), Gaps = 7/250 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 RY +++ Y+G+ + G+QRQ + +++ + KA+ + E +V++GAGRTD+GVHA Sbjct: 15 RYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAFG 74 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFDL E P + + LN+ L + DTI + +SIV FHAR+ + + Y YR Sbjct: 75 QTLHFDLPYEINPEGVRRGLNSMLPM-DTI-VKAVSIVPNDFHARYDTVGKRYWYRAYQN 132 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + D + ++ A L GRHDF+TF + QA +R I + Sbjct: 133 EFVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWA 192 Query: 180 FGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + EI+ FL+ Q+R V L +G G+ + L A+DR++ AP Sbjct: 193 LPDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPAA 252 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 253 GLYMKKVYYE 262 >gi|315659196|ref|ZP_07912060.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis M23590] gi|315495621|gb|EFU83952.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis M23590] Length = 264 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q G ++Q EK + + V +H + RTD GVHAL Q Sbjct: 1 MRILVNICYQGSNFLGFQIQNQGRTVQQQFEKILKRMHRHDVRIHPSSRTDRGVHALEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + + VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELKIADGQWQYAMNSAL--PDDIYVKEVKQVDSDFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G +P+ L+ E M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 KNPFESGLKTYVPQQLNIERMNEAAQKFIGTHDFTGFCSQKTEVESKVRTLYQSEIEMTT 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R + L VG G + ++ L+ ++R AP EGLY Sbjct: 179 YGFDYIVTGSGFLYNMVRVLMAFLIGVGKGNRSPEEVTALLEQKNRDNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|300742028|ref|ZP_07072049.1| tRNA pseudouridine synthase A [Rothia dentocariosa M567] gi|300381213|gb|EFJ77775.1| tRNA pseudouridine synthase A [Rothia dentocariosa M567] Length = 316 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 130/271 (47%), Gaps = 35/271 (12%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+G+ + GW RQ N ++QG +E A+ LV V AGRTD+GVHA Q H D+ E Sbjct: 12 YDGTWFSGWARQPNLVTVQGVLEDALELVLRTHHRVTVAGRTDAGVHAQAQTIHLDIATE 71 Query: 70 -WVPVI-----------LCKALNAYLK-------------------ISDTISILNLSIVD 98 W + L + ++ LK + ++ + + V Sbjct: 72 TWQKLTGRDGLADPAESLKRKVSGALKRTLAQAEHTLGIPERMRGLLQGSLVLHQVQPVP 131 Query: 99 KQFHARFSAIRRSYLYRIITRQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 + F ARFSA R Y YRI+ Q +P L + AW IP+SLD E++ AA L G HDF Sbjct: 132 QDFDARFSATGRRYTYRILDGQGSSPDPLHRAYAWCIPESLDLEDLNKAAHELTGLHDFL 191 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +F + ++ IR + + + +IE V A +F H +RS +G+L L G GK T Sbjct: 192 SFCKPR-EGATTIRELRRIYLTRHDDGVIEATVEADAFCHHMVRSLIGALVLYGTGKRTQ 250 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L + L+ R +APP GL ++Y Sbjct: 251 AWLRERLENPQRDASLIMAPPHGLALAHIDY 281 >gi|261409491|ref|YP_003245732.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10] gi|329922021|ref|ZP_08277814.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5] gi|261285954|gb|ACX67925.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10] gi|328942404|gb|EGG38668.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5] Length = 263 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 126/259 (48%), Gaps = 18/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ Y G+Q Q G +IQ +E+AI ++GE + + +GRTD+GVHA Q Sbjct: 1 MRNLLMKVSYDGTDYNGFQTQPGGHTIQDYLEEAIRRLSGEQLKITASGRTDAGVHARAQ 60 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V +F +PV C ALN +L + I + + V +FH+R +A R++Y + I Sbjct: 61 VFNF-YTASPIPVERWCMALNTWL--PEDIVVSDAMEVPMEFHSRHAAKRKTYRFTINAN 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 Q P + LD M HL+G HDFTTF S S +RTI FD Sbjct: 118 QYPDLFNRRYQIHHHGKLDIAAMEQGLSHLIGTHDFTTFASRKSTKPSHVRTI--FDAWI 175 Query: 178 ----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +I V FL +R +G+L VG+GK D++ L+AQ+R Sbjct: 176 EKDTSMCRPGTRDQGIIHTYVSGNGFLQHMVRIIMGTLIEVGEGKRHPDDMKVILEAQNR 235 Query: 228 KECGPLAPPEGLYFDSVEY 246 GP A +GL V+Y Sbjct: 236 AAAGPTAMGKGLMLWEVDY 254 >gi|227871757|ref|ZP_03990163.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] gi|227842397|gb|EEJ52621.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] Length = 265 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 7/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y G+ Y G+Q+Q+ S+I G++E+ + L ++ GA RTD GVHAL + Sbjct: 11 RIVLKLAYEGTSYHGFQKQEGLSTIAGTVEEQLRNLFPWKMENFIGASRTDQGVHALGNL 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD + + +ALN+YL + I ++ V + FH RF+ R++Y Y I + Sbjct: 71 LSFDTEGKVSGEQILRALNSYL--PEDIRVMEAYSVQQDFHPRFTPHRKAYRYSICRSKV 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA----SSPIRTIDHFDV 177 L + A+ LDC + + L G HDF +F + Q+ S +R I F + Sbjct: 129 ENPLRRRTAYHYTFPLDCGKISEGMELLKGEHDFRSFANPKAQSLLQGGSSVREIYRFSM 188 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + V FL+ IR G+L +G G+ + + LE+ L+ +DR GP AP + Sbjct: 189 EEEGDYLHFSVEGNGFLYHMIRILAGTLLELGRGRISLSQLEEILEKKDRTLAGPTAPAK 248 Query: 238 GLYFDSVEY 246 GL +++Y Sbjct: 249 GLCLMNLDY 257 >gi|269216172|ref|ZP_06160026.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122] gi|269130431|gb|EEZ61509.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122] Length = 331 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/256 (35%), Positives = 131/256 (51%), Gaps = 19/256 (7%) Query: 8 IEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+ + G+ RQ +++QG +E+ + ++ V AGRTD+GVHAL QV FD Sbjct: 78 VAYDGAPFAGFARQAESHVTTVQGELERVLSVLYRRAVDTVCAGRTDAGVHALGQVVSFD 137 Query: 66 LVREWV---PV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L E P+ L K++NA + + I++ F ARF A R Y Y I T A Sbjct: 138 LTEEEFASRPLRTLMKSMNAL--VDERITVTCAEERPAGFSARFDATSREYRYFIATGNA 195 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTF----RSIHCQAS--SPIRTIDH 174 L W L LD + M AA+ LVG HDF +F ++H + S R + Sbjct: 196 RPVLIARSVWHLRGAPLDVDAMNTAARFLVGEHDFKSFCVASSALHLEGEGRSTCRRVIE 255 Query: 175 FDVNS---FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 DV S G ++E+R+V +FLH+ IR VG+L VG G+ ++ + L A+DR Sbjct: 256 ADVRSTHVMGTPVVEVRIVGNAFLHSMIRIIVGTLVAVGQGRRDASWVADVLAARDRTAA 315 Query: 231 GPLAPPEGLYFDSVEY 246 G AP GL F SV Y Sbjct: 316 GETAPACGLTFWSVRY 331 >gi|194477033|ref|YP_002049212.1| tRNA pseudouridine synthase A [Paulinella chromatophora] gi|171192040|gb|ACB43002.1| tRNA pseudouridine synthase A [Paulinella chromatophora] Length = 252 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R + ++Y GS Y GWQRQ+N S+Q +E+A+ L + ++ AGRTD+GVHA Sbjct: 1 MKRIALCLQYEGSSYCGWQRQRNALSVQEVLEEALLALGCDKPIISFAAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN YL S I L + V +HA +SA+ R Y Y ++ Sbjct: 61 QVVHFDTNSPIPTDSWASALNGYLPSS--IRALKATSVPNNWHACYSAVYRRYRYTLLNS 118 Query: 120 QAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P +W LD MR + +G HDF+ F+ S TI + Sbjct: 119 REPDLFIAPYSWHRYDTVLDENAMRRSLLTFLGTHDFSAFQRSGSDRISTRTTIQEVSLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I + + A FL+ +R V L VG+G+ T ++LE+ + R + AP +G Sbjct: 179 RYDEKITLEIQASGFLYGMVRLMVAQLVEVGEGRLTESNLEQRWRQHCRGQIKEAAPAQG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLLQVGY 246 >gi|167765202|ref|ZP_02437315.1| hypothetical protein BACSTE_03590 [Bacteroides stercoris ATCC 43183] gi|167696830|gb|EDS13409.1| hypothetical protein BACSTE_03590 [Bacteroides stercoris ATCC 43183] Length = 251 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 118/248 (47%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + LN L IS+ L V HARF A R+Y Y + T + Sbjct: 61 VAHFDSETPLDVIFMMDKLNRLLPPD--ISVYRLRAVRPDAHARFDATARTYKYYVTTAK 118 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + R + P D E M AA+ L DFT+F +H + I H Sbjct: 119 MPFNRQYRCRLFQTP---DFERMNEAARTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQ 175 Query: 180 FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + A FL +R+ VG+L VG GK T + ++ +DR G P Sbjct: 176 VDEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTIGGFRRVIEQKDRCRAGTSVPGNA 235 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 236 LFLVDVAY 243 >gi|302346677|ref|YP_003814975.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC 25845] gi|302150885|gb|ADK97146.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC 25845] Length = 253 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 126/268 (47%), Gaps = 37/268 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E A+ + E + + GAGRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHALSTILRESIAITGAGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L +N L +S+ + V + HARFSA R+Y Y + T + Sbjct: 61 VAHFDTELSFDCAQLVYKVNRLLPRD--VSVSRIEPVGEDLHARFSATSRTYHYYVHTGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + A + SLD + M AA +L+G DF F C+A + ++T + Sbjct: 119 QPFSRQYSCA--LHYSLDFDKMNEAAAYLIGEKDFKCF----CKAGADVKT-------TI 165 Query: 181 GNLIEIR----------------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 NL E R + A FL +R+ VG+L VG G+ + + Sbjct: 166 CNLTEARWIPTNDEFALATDDTVTNWCFVITANRFLRNMVRAVVGTLVEVGRGRLSLDEF 225 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 +K + R + G P L+ V+Y Sbjct: 226 KKIVDGGTRSDAGESMPGNALFLWEVKY 253 >gi|168186842|ref|ZP_02621477.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] gi|169295253|gb|EDS77386.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] Length = 245 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I+Y+G+ Y GWQ+ N ++IQ IE + + GE V + +GRTD+GVHA QVA+F Sbjct: 6 LTIQYDGTRYKGWQKLGNNDTTIQHKIESVLNELLGEKVSLMASGRTDAGVHANMQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + K L YL I + +++ FH+R++ + Y YRI + Sbjct: 66 KTDSEISNDEIFKYLYKYL--PQDIVVTSVNNASDNFHSRYNVKEKVYTYRIHNSEVHDV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + ++ I + LD + M+ A++ +G HDF +F ++ + S ++ I+ N I Sbjct: 124 FTRKYSYHIKEKLDLKKMKEASKLFIGEHDFKSFTALKSKKKSTVKAINSITFRKKENDI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 EI FL+ IR VG+L G K + +++ + +DR AP GL V Sbjct: 184 EIVFSGNGFLYKMIRILVGTLIQAGLNKISLDEIQNIMDKKDRNIAPETAPAHGLTLTEV 243 Query: 245 EY 246 +Y Sbjct: 244 KY 245 >gi|226496511|ref|NP_001146958.1| pseudouridylate synthase [Zea mays] gi|195605848|gb|ACG24754.1| pseudouridylate synthase [Zea mays] Length = 386 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 116/218 (53%), Gaps = 14/218 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 66 RYLVAVEYIGTRFSGSQKQPNQRTVTGVLEEAFHRFIGQPVSIIFSSRTDAGVHALSNVC 125 Query: 63 HFDLVR-----------EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L K I + ++ V FHAR+ ++ R Sbjct: 126 HVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKSEGDIMVTDVCCVAPDFHARYKSLER 185 Query: 111 SYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y YR++ ++ EK W I + LD ++M+ A LVG HDF++FR+ CQA+SP+ Sbjct: 186 TYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFRAAGCQANSPV 245 Query: 170 RTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLK 206 RT+D V F + V RS L S V S K Sbjct: 246 RTLDELSVTEVFPFMFFPSSVERSELELSNVSLVYSRK 283 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ARSFL+ Q+R VG LK VG G T+ D+E+ L A+ +AP GLY +V+Y Sbjct: 326 ARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSMAPSCGLYLANVKY 382 >gi|282879881|ref|ZP_06288608.1| tRNA pseudouridine synthase A [Prevotella timonensis CRIS 5C-B1] gi|281306275|gb|EFA98308.1| tRNA pseudouridine synthase A [Prevotella timonensis CRIS 5C-B1] Length = 243 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ+Q N S+Q ++KA+ + E +VV GAGRTD+GVHA + Sbjct: 1 MQRYFIYFSYDGTSYHGWQQQPNSHSVQAELQKALSTILREPIVVVGAGRTDTGVHARKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ L LN L IS+ + V HARFSA R+Y Y + + + Sbjct: 61 VAHFDIEAVIDGEQLAYKLNRLL--PRDISVAGVKPVQADMHARFSAKWRTYHYYVHSHK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNS 179 P + + +P LD M AA HL+ DF F H + + + + V + Sbjct: 119 NPFL--RHYSCQLPFQLDYPLMNQAANHLLSVTDFGAFCKTHTDVKTTLCEVVRAEWVQT 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG + T + +++ +R G P L Sbjct: 177 GEDSWYFVIKANRFLRNMVRAVVGTLIEVGRHRMTLEQFDAVIRSGNRSNAGESMPAHAL 236 Query: 240 YFDSVEY 246 + + +EY Sbjct: 237 FLEEIEY 243 >gi|254525991|ref|ZP_05138043.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9202] gi|221537415|gb|EEE39868.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9202] Length = 268 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+G Y GWQ+QKN +++Q +E A+F +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGYHYSGWQKQKNATTVQEILESALFKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN L TI IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDSVIPGFSYSNILNNLL--PSTIRILESVEVKNSWHACYSAVYRHYRYVINNGK 118 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W K LD M A++ + G HDF F+ + + I + D+ Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLRASKTMKGEHDFFAFQKSGSNRRNSVTKIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K +S + + + AP +GL Sbjct: 179 VEDLIFVDIKATGFLYGMVRLIVGQLVLVGEKKISSDIFIDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|254302141|ref|ZP_04969499.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322333|gb|EDK87583.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 247 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 13/242 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF----D 65 Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV++F + Sbjct: 14 YDGSRYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHANHQVSNFYTSSN 73 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E +L +AL + I IL++ VD+ F+AR +A R Y+Y I + P Sbjct: 74 IPIEKYKYLLTRAL------PNDIDILSVEEVDENFNARHNAKMREYVYIISWEKNP--F 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LI 184 E + + + E + +G HDF FR C + IR I +V FG+ I Sbjct: 126 EARHCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTIREIYQIEVKYFGDSKI 185 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + +FL +Q+R VG++ + G+ ++ L R+ L EGLY + + Sbjct: 186 KIYIKGSAFLKSQVRIMVGTVLEIYYGRLPENHIKLMLNDFTREYKKNLVEAEGLYLNKI 245 Query: 245 EY 246 +Y Sbjct: 246 KY 247 >gi|295694868|ref|YP_003588106.1| tRNA pseudouridine synthase A [Bacillus tusciae DSM 2912] gi|295410470|gb|ADG04962.1| tRNA pseudouridine synthase A [Bacillus tusciae DSM 2912] Length = 277 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 14/245 (5%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y G+QRQ ++QG +E A+ + G V + GAGRTD+GVHA QV F Sbjct: 7 VGYDGTDYHGFQRQPGLRTVQGVLEGALGELAGREVSIVGAGRTDAGVHARGQVIAF--- 63 Query: 68 REWVPVILCK--ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 EW I + ++ + + + NL + FH RFSA+ + Y Y + P Sbjct: 64 -EWPGPIPWQRLERVLLRRLPEDLVVSNLEPAPESFHPRFSAVGKCYRYTLDQGVYPSVF 122 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDVNSFG 181 + W +P +D +MR AA G HD+T+F C AS+P +RT+ + Sbjct: 123 LRRYTWHVPTQMDLGSMRRAALAAAGTHDYTSF----CAASTPVQNKVRTVYAIRLAEEP 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R VG+L VG GK + + L A+DR+ G AP +GL Sbjct: 179 PFVHLYVFGNGFLYQMVRILVGTLVEVGIGKRSVESISGILAARDRRAAGVTAPAKGLTL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 WDVYY 243 >gi|189467951|ref|ZP_03016736.1| hypothetical protein BACINT_04345 [Bacteroides intestinalis DSM 17393] gi|189436215|gb|EDV05200.1| hypothetical protein BACINT_04345 [Bacteroides intestinalis DSM 17393] Length = 253 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 118/248 (47%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + +A+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGDSVQECLMRALATLMRREVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V LN L ISI + V HARF A R Y Y + T + Sbjct: 61 VAHFDSDEPLDTVFFTDKLNRLLPPD--ISIYRIRAVKPDAHARFDATARMYKYYVTTVK 118 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +P + + R + P D E M AA+ L DFT+F +H + I H Sbjct: 119 SPFNRQYRCRLFQAP---DFERMNEAARILFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQ 175 Query: 180 FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++ + + A FL +R+ VG+L VG GK T + ++ +DR + G P Sbjct: 176 VDDVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVEGFRRVIEQKDRCKAGTSVPGNA 235 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 236 LFLVDVTY 243 >gi|315919940|ref|ZP_07916180.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] gi|313693815|gb|EFS30650.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] Length = 260 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 116/240 (48%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA VAHFD Sbjct: 1 MAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLMVAHFDSD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + LN L ISI + V H RF A R+Y Y + T + P + Sbjct: 61 ELLDTTSVTDKLNRLLPPD--ISIYRVCRVRPDAHVRFDATARTYKYYVTTSKYP--FNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 W + L+ E M AA L +DFT+F +H + I I H + + + Sbjct: 117 QYRWRLYNQLNYERMNEAAHILFEYNDFTSFSKLHTDVKTNICHITHAEWTQEEDATWVF 176 Query: 188 VV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L+ +VEY Sbjct: 177 TIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQALFLVNVEY 236 >gi|157414138|ref|YP_001485004.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9215] gi|166991165|sp|A8G737|TRUA_PROM2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157388713|gb|ABV51418.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9215] Length = 268 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+G Y GWQ+QKN +++Q +E A+F +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGYHYSGWQKQKNATTVQEILESALFKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN L TI IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDSVIPGFSYSNILNNLL--PSTIRILESVEVKNSWHACYSAVYRHYRYVINNGK 118 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W K LD M A++ + G HDF F+ + + I + D+ Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLHASKTMEGEHDFFAFQKSGSNRRNSVTLIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K +S + + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISSDIFIDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|160934132|ref|ZP_02081519.1| hypothetical protein CLOLEP_02995 [Clostridium leptum DSM 753] gi|156866805|gb|EDO60177.1| hypothetical protein CLOLEP_02995 [Clostridium leptum DSM 753] Length = 251 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 118/243 (48%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y+G Y GWQ Q+N S+Q + A+ V G+ V G RTDSGVHA + Sbjct: 8 LTIAYDGRAYHGWQIQENALSVQEVFQGALRQVIGDDFDVKGCSRTDSGVHANQYCISLK 67 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L ALN +L + +++ V FHAR+S + Y Y I Sbjct: 68 TGHRIPCERLVAALNRFLPMD--MAVKGCRSVSLDFHARYSCKGKEYQYLIWNDPVRNPF 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSFGNLI 184 GRA+ LD + + AAQ VG+HDFT+F ++ H + + R + V+ G+L+ Sbjct: 126 LDGRAFHYWYPLDTDMLNQAAQAFVGKHDFTSFCTLDHRERDNMERMVKCCSVSREGSLV 185 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 RV A FL+ +R VG+L + GK + L+A+DR + GP A GLY + V Sbjct: 186 TFRVEADGFLYNMVRIMVGTLLRIAQGKIPEDGIPAILEAKDRSKAGPTARACGLYLNRV 245 Query: 245 EYS 247 Y Sbjct: 246 FYE 248 >gi|256028207|ref|ZP_05442041.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] gi|289766139|ref|ZP_06525517.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] gi|289717694|gb|EFD81706.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] Length = 245 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 123/243 (50%), Gaps = 15/243 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV++F Sbjct: 12 YDGSRYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQVSNF-YTSS 70 Query: 70 WVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +P+ +L +AL S I IL++ VD+ F+AR +A R Y+Y I + P Sbjct: 71 TIPIEKYKYLLTRAL------SKDIDILSVEEVDENFNARHNAKMREYIYIISWEKNP-- 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NL 183 E + + +D + VG HDF FR C + IR I +V FG + Sbjct: 123 FEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIREIYQIEVKYFGESK 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I+I + +FL +Q+R VG+ + G+ ++ L R+ L EGLY + Sbjct: 183 IKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIKLMLNDFTREYKKNLVEAEGLYLNK 242 Query: 244 VEY 246 + Y Sbjct: 243 INY 245 >gi|297180263|gb|ADI16482.1| pseudouridylate synthase [uncultured bacterium HF4000_05M23] Length = 273 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 119/248 (47%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ +++EY+G+ + G Q Q N ++QG IE A+ + E + VH A RTDSGVHA QV Sbjct: 1 MRFGLVVEYDGTNFHGSQLQSNARTVQGEIESALLQIFSEKIRVHFASRTDSGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD--KQFHARFSAIRRSYLYRIITR 119 FD + P + KALN + I L + D F R A R+Y+Y Sbjct: 61 GRFDAETDMPPDQIRKALNFHTTTDVRIRCAQL-VEDGPDGFDPRGDASARTYVYTFNDA 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-PIRTIDHFDVN 178 + AL++ + K LD M A+Q LVG HDF +F + +R ++ Sbjct: 120 PSEPALDRHYVTHVRKPLDEIAMNDASQALVGLHDFASFAGPKAPHDALTMRNVETASTT 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ IE ++ A +FLH QIR G L VG G + L +R + P +G Sbjct: 180 RIGDSIEFKITANAFLHQQIRRIAGVLCDVGTGGSPVAVVGDLLATAERGAASHVMPAQG 239 Query: 239 LYFDSVEY 246 L + + Y Sbjct: 240 LCLEKIAY 247 >gi|125623329|ref|YP_001031812.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris MG1363] gi|166228735|sp|A2RIH1|TRUA_LACLM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124492137|emb|CAL97066.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris MG1363] gi|300070076|gb|ADJ59476.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris NZ9000] Length = 253 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 17/256 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + L + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI--- 116 QV HFDL + + + + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDLNGKARDLERLR-FGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENS 119 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-- 174 +TR +P + P L+ E M+ A LVG+HDFT F + +RTI Sbjct: 120 VTR-SPFHRHSKAYFRYP--LNFERMQGAMVKLVGQHDFTGFTASGSSVDDKVRTIYQAE 176 Query: 175 ---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D +F + FL+ Q+R+ VG++ +G+ + + ++K L +++R G Sbjct: 177 IIQLDKENFKFIFR----GNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAG 232 Query: 232 PLAPPEGLYFDSVEYS 247 P A PEGLY V+Y Sbjct: 233 PTAAPEGLYLKEVKYE 248 >gi|303230129|ref|ZP_07316898.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-134-V-Col7a] gi|302515190|gb|EFL57163.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-134-V-Col7a] Length = 261 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ G+Q+Q G ++QG++EKA+ ++ E + ++GA RTD+GVHA QV Sbjct: 6 LIVAYDGTDLAGYQKQPADKGITVQGALEKALSIICAEPIQIYGASRTDAGVHARFQVCA 65 Query: 64 FDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +PV + +A A+L I + + + R + + Y+Y I R+ Sbjct: 66 FQ-TSGSIPVKNIPRATIAHL--PKDIVVTEAVEIPLDWKPRHNIFGKEYIYSIYNREIA 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + W + K LD E MR A + L G HDF+T + + P++TI + Sbjct: 123 DPMGQRYHWHVKKPLDVEAMRQAGKALEGTHDFSTLKGANTTPVDPVKTIYAIGIKEKAG 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I+I VV FL+ +R+ G L +G G+ + + + L A+DRK G AP +GL + Sbjct: 183 RIDISVVGDGFLYHMVRNIAGLLVDIGLGRKSVARIPELLAAKDRKRIGKTAPAQGLVLE 242 Query: 243 SVEYS 247 + ++ Sbjct: 243 EIFFT 247 >gi|320353071|ref|YP_004194410.1| tRNA pseudouridine synthase A [Desulfobulbus propionicus DSM 2032] gi|320121573|gb|ADW17119.1| tRNA pseudouridine synthase A [Desulfobulbus propionicus DSM 2032] Length = 274 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 123/253 (48%), Gaps = 14/253 (5%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++I Y+G Y GWQRQ+ G ++IQ +E+ + + E + +HGAGRTD+GVHAL VAHF Sbjct: 7 LLIAYDGGNYCGWQRQRQGEATIQEELEQRLSHLCEEPITLHGAGRTDAGVHALGMVAHF 66 Query: 65 DLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 R +PV+ K LNA L I IL FH+RFSA+ ++Y Y T Sbjct: 67 H-TRAAIPVVAFFKGLNALL--PPDIRILAAEEASATFHSRFSALGKTYRYDFFTGAVQC 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI------RTIDHFDV 177 + P D + +R A LVGRHDF++F + + I RT+ Sbjct: 124 PSTRLHRAHFPGPFDPKRLRTALTQLVGRHDFSSFERSGSRDKTAIDGRGAVRTLYEIRC 183 Query: 178 N---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + + V FL +R G+L +G GK + L A+DR + G A Sbjct: 184 SPRLGCEDFWSLHVTGDGFLRQMVRILAGTLIEIGHGKRPEEAIAAILAARDRTQAGLTA 243 Query: 235 PPEGLYFDSVEYS 247 P GL+ + + Y Sbjct: 244 PACGLFLERLYYP 256 >gi|296119322|ref|ZP_06837890.1| tRNA pseudouridine synthase A [Corynebacterium ammoniagenes DSM 20306] gi|295967714|gb|EFG80971.1| tRNA pseudouridine synthase A [Corynebacterium ammoniagenes DSM 20306] Length = 297 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 130/263 (49%), Gaps = 22/263 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 ++R I Y+G+ + GW QK ++QG +E+ + ++ + + AGRTD+GVHA Sbjct: 14 LVRLRFDIAYDGTDFHGWASQKGQLRTVQGVLEQCLTMILRHPIELTVAGRTDAGVHAAG 73 Query: 60 QVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAH D+ E + P L + L + D I I ++S + F ARFSA+RR Sbjct: 74 QVAHADVPVESLQQRSIDGEPAKLVRRLAKL--VDDDIRIHSVSFAPEGFDARFSALRRH 131 Query: 112 YLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YRI T +A P L W P +D + M+ AA LVG HDF F A++ Sbjct: 132 YVYRITTEEAGALPTRLRDTATWTRP--VDIDLMQQAATTLVGLHDFAAFCKAKPHATT- 188 Query: 169 IRTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 IR + F S NL E V A +F + +RS VG VG+G+ +E L Sbjct: 189 IRDLQEFYWVDASTPSEPNLYEAHVSADAFCWSMVRSLVGCCLAVGEGRRDINFVEAMLG 248 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 +R P+A +GL V+Y Sbjct: 249 ESERSSSIPVAAAKGLSLVGVDY 271 >gi|329957112|ref|ZP_08297679.1| tRNA pseudouridine synthase A [Bacteroides clarus YIT 12056] gi|328523380|gb|EGF50479.1| tRNA pseudouridine synthase A [Bacteroides clarus YIT 12056] Length = 251 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 117/247 (47%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R+Y Y + T + Sbjct: 61 VAHFDSEVPLDVTFMADKLNRLLPPD--ISVYRLRAVRPDAHARFDATARTYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + R L ++ D E M AAQ L DFT+F +H + I H Sbjct: 119 MPFD-RRYRCRLF-QTPDFERMNEAAQTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQV 176 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A FL +R+ VG+L VG GK T + ++ +DR G P L Sbjct: 177 DEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTIEGFRRVIEQKDRCRAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + + Y Sbjct: 237 FLVDIAY 243 >gi|162446996|ref|YP_001620128.1| tRNA pseudouridine synthase A [Acholeplasma laidlawii PG-8A] gi|161985103|gb|ABX80752.1| pseudouridylate synthase [Acholeplasma laidlawii PG-8A] Length = 240 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 119/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I Y+G+ Y G+Q+Q N IQ IEKA L+T + A RTD GVHAL QV Sbjct: 1 MRYKAIFSYDGTNYSGYQKQINQLGIQTVIEKAFRLMTQIDIETFAASRTDKGVHALHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E ALN ++ I ++ ++ V FHAR SA + Y+Y+I + Sbjct: 61 LHFDSDIELTSDQWVDALNK--RLPTDIRLMKVTPVKDNFHARHSAKSKRYIYKIA--KQ 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +G L K D + ++ +VG HDF+ F S + + PI+TI FD Sbjct: 117 PSTVFRGNHELYVKHFDIDLVKDHLHTIVGTHDFSGF-SPNKEHKPPIKTIYSFDYKETK 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + SFL +R +G++ V K LE L+ ++R+ A +GLY Sbjct: 176 THYIFSIHGNSFLRYMVRIIMGNVIAVATNKKPQNQLEILLETKNRELSAKTADAKGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 KHIYY 240 >gi|328948028|ref|YP_004365365.1| tRNA pseudouridine synthase A [Treponema succinifaciens DSM 2489] gi|328448352|gb|AEB14068.1| tRNA pseudouridine synthase A [Treponema succinifaciens DSM 2489] Length = 261 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK---NGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M + + Y+G+ + GWQRQ NGS ++QG IE A+F + V + G+GRTDSG Sbjct: 1 MTNILLTVSYDGTDFCGWQRQDKSDNGSPVRTVQGEIENALFKMLKVPVKLSGSGRTDSG 60 Query: 55 VHALRQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VHA Q A+F+ + +P +ALN L I IL V+K F +RF A R Y Sbjct: 61 VHAAGQAANFESPIDTIPCENYVRALNGIL--PQDIRILKARKVEKDFSSRFCATSRLYR 118 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I T+ P A E W I + + + L G D +F + + S R ID Sbjct: 119 YFIQTKNPPFASESRYRWFISFRPEIDLLNEMCSCLRGEIDCASFAASGDSSLSTKRYID 178 Query: 174 H---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + F +L+ ++ A +FL +RS G+L + K + + +K L+++DR + Sbjct: 179 NAFFFWNKENPDLLVFQIEANAFLWKMVRSITGTLIQLAQKKCSPNEFKKILESRDRTKA 238 Query: 231 GPLAPPEGLYFDSVEY 246 G APP GL+ V++ Sbjct: 239 GITAPPTGLFLWEVKF 254 >gi|237743728|ref|ZP_04574209.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1] gi|229432759|gb|EEO42971.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1] Length = 245 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 122/243 (50%), Gaps = 15/243 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GSGY+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV++F Sbjct: 12 YDGSGYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQVSNF-YTSS 70 Query: 70 WVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +P+ +L +AL + I IL++ VD+ F+AR +A R Y+Y I + P Sbjct: 71 TIPIEKYKYLLTRAL------PNDIDILSVEEVDENFNARHNAKMREYVYIISWEKNP-- 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NL 183 E + + +D + VG HDF FR C + IR I +V FG + Sbjct: 123 FEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIREIYQIEVKYFGESK 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I+I + +FL +Q+R VG + G+ + L R+ L EGLY + Sbjct: 183 IKIYIKGSAFLKSQVRIMVGIALEIYYGRLPENHIRLMLNDFTREYKKNLVEAEGLYLNK 242 Query: 244 VEY 246 + Y Sbjct: 243 INY 245 >gi|123969273|ref|YP_001010131.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. AS9601] gi|166228750|sp|A2BTB3|TRUA_PROMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123199383|gb|ABM71024.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. AS9601] Length = 268 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQ+QKN ++IQ ++KA+ +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGSHYSGWQKQKNANTIQEILDKALLKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN+ L TI IL V +HA +SA R Y Y I + Sbjct: 61 VIHFDIDCVIPGNSYSDVLNSLL--PSTIRILESVEVKDSWHACYSASYRHYRYVINNSK 118 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W K LD M A++ + G HDF F+ + I I + DV Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLNASKKMEGEHDFFAFQKSGSNRQNSITKIKNIDVKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K + + + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISPEIFTDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|260495597|ref|ZP_05815722.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33] gi|260196939|gb|EEW94461.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33] Length = 245 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 122/243 (50%), Gaps = 15/243 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV++F Sbjct: 12 YDGSRYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQVSNF-YTSS 70 Query: 70 WVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +P+ +L +AL + I IL++ VDK F+AR +A R Y+Y I + P Sbjct: 71 TIPIEKYKYLLTRAL------PNDIDILSVEEVDKNFNARHNAKMREYVYIISWEKNP-- 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NL 183 E + + +D + VG HDF FR C + IR I +V FG + Sbjct: 123 FEARYYKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIRKIYQIEVKYFGESK 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I+I + +FL +Q+R VG+ + G+ + L R+ L EGLY + Sbjct: 183 IKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLNDFTREYKKNLVEAEGLYLNK 242 Query: 244 VEY 246 + Y Sbjct: 243 INY 245 >gi|270307870|ref|YP_003329928.1| pseudouridylate synthase [Dehalococcoides sp. VS] gi|270153762|gb|ACZ61600.1| pseudouridylate synthase [Dehalococcoides sp. VS] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTMYSGFQIQDKGATIQGELETAIQKLTNEKTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 SESSLGLEKIKGGLNYYLPTD--IAVKEVYFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L G HDF F S+ + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDTKLMEQAFKMLEGEHDFVAFASSLGPEIKKTVRRVNWTRLDIAEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A SFL Q+R+ +G+L +G G + + +A+ GP AP GL V Sbjct: 179 VFRIEANSFLTHQVRNTIGTLVELGRGILSMREFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|78045100|ref|YP_361085.1| tRNA pseudouridine synthase A [Carboxydothermus hydrogenoformans Z-2901] gi|77997215|gb|ABB16114.1| tRNA pseudouridine synthase A [Carboxydothermus hydrogenoformans Z-2901] Length = 246 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 19/254 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + + + I Y+G+ + G+Q+QKN +IQG +E+ + + E V V GAGRTD+GVHAL Sbjct: 4 LPNFKLTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILKEPVKVIGAGRTDAGVHALG 63 Query: 60 QVAHFDLVREW------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 QV +F W +P IL L I +L IV FHAR+SA ++ Y Sbjct: 64 QVVNFSA--PWKAPVDKIPEILNNTL------PTAIRVLEAEIVPDDFHARYSARKKEYR 115 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + P + AW +P+ LD E + A ++L+G HDF+ F + +PI+T+ Sbjct: 116 YYLY-YGPPSPFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGKNPIKTMF 174 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG-DGKWTSTDLEKALQAQDRKECGP 232 G L VA SFL+ R G+L +G +G + + L ++K G Sbjct: 175 EASYREDGFLGYFTFVADSFLYKMARILTGTLVEIGLNGH--PERVREILTTGNKKLAGK 232 Query: 233 LAPPEGLYFDSVEY 246 AP GL+ V Y Sbjct: 233 TAPAHGLFLVKVFY 246 >gi|283853830|ref|ZP_06371050.1| tRNA pseudouridine synthase A [Desulfovibrio sp. FW1012B] gi|283570781|gb|EFC18821.1| tRNA pseudouridine synthase A [Desulfovibrio sp. FW1012B] Length = 270 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 120/253 (47%), Gaps = 8/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + GE V + GAGRTDSGVHA+ Sbjct: 1 MPRLRLTLAYDGTAFAGWQLQAPGRGRTVQGCLEEALATLCGEPVRIFGAGRTDSGVHAM 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + KALNA L +S+ +V FHARF A + Y Y + T Sbjct: 61 AQVAHVDVPEGRAAIPWQKALNALLPAD--MSVAGAELVPDGFHARFCATGKVYHYTLWT 118 Query: 119 RQAP-LALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L + W + + LD M A G HDF F++ + R + Sbjct: 119 EPGHVLPWRRPYVWDVGRYGRLDVAAMDACAACFAGFHDFAAFQNAGSDVKTTTRLVHGV 178 Query: 176 D-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + G + R A FL +R+ +G+L VG GK + D+ L R+ A Sbjct: 179 TRLATGGPEMVWRFHAEGFLKQMVRNLMGALVAVGRGKVSPEDIRSVLTQGQRRLAPQTA 238 Query: 235 PPEGLYFDSVEYS 247 P GL VEY Sbjct: 239 PASGLCLVVVEYG 251 >gi|160942942|ref|ZP_02090181.1| hypothetical protein FAEPRAM212_00419 [Faecalibacterium prausnitzii M21/2] gi|158445843|gb|EDP22846.1| hypothetical protein FAEPRAM212_00419 [Faecalibacterium prausnitzii M21/2] Length = 254 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFR 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F P L ALN +L I +L V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPPQKLPLALNQHLPPD--IRVLAAQTVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDVN 178 + +P+ LD M+ AAQ VG HDF + A +RTI V Sbjct: 119 DSPFDAAYYTRVPRRLDEAAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ ++I V A +L+ +R G+L VG G+ + D+ L ++DR GP P +G Sbjct: 179 RRGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEYS 247 L+ V+Y Sbjct: 239 LFLKCVDYP 247 >gi|255536203|ref|YP_003096574.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium 3519-10] gi|255342399|gb|ACU08512.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium 3519-10] Length = 245 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 125/250 (50%), Gaps = 12/250 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G YFG+Q Q +IQ +EKA+ + + GAGRTD+GVHA + Sbjct: 1 MRYFIEFSYHGKNYFGYQIQPREITIQQELEKALSTLLRAEIKTTGAGRTDTGVHAKKMY 60 Query: 62 AHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD V + +P LN++L I++ + V HARF A R+Y Y I Sbjct: 61 AHFDTEIAVEDNLPY----RLNSFL--PQDIAVSRIFKVKDDLHARFDATFRTYEYYISL 114 Query: 119 RQAPLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + +W I ++L+ M A + L DFT+F +H + I Sbjct: 115 AKNPFS--QDFSWQIRNRTLEIGKMNEACRILFEYEDFTSFSKLHTDNKTNNCKIYKAFW 172 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GN ++ V A FL +R+ VG++ +G+GK DL K ++A+DR G AP + Sbjct: 173 EQNGNELKFTVSADRFLRNMVRAIVGTMVEIGNGKIQPMDLRKIIEAKDRSFAGTSAPAQ 232 Query: 238 GLYFDSVEYS 247 GL+ V Y Sbjct: 233 GLFLVDVGYD 242 >gi|300932964|ref|ZP_07148220.1| tRNA pseudouridine synthase A [Corynebacterium resistens DSM 45100] Length = 324 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 132/264 (50%), Gaps = 26/264 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + + Y+G+ + GW Q ++QG +E+ + LVT V + AGRTD+GVHA Q Sbjct: 40 MVRVRLDVAYDGTDFHGWAAQFGLRTVQGVLEEKLSLVTRHAVQLTVAGRTDAGVHADGQ 99 Query: 61 VAHFDLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VAHFD+ P L + L+ L + + S F ARFSA+RR Y+ Sbjct: 100 VAHFDVPATTFTQRSLQRPGDLVRRLSRMLPAD--VRVHGASEAPVGFDARFSALRRHYV 157 Query: 114 YRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 YR+ T A P+ + W P +D + ++ A++ LVG +DF F C+A Sbjct: 158 YRVTTATAGPRPVRVRDTARWRRP--IDLDKVKAASEVLVGLNDFAAF----CKAREGAT 211 Query: 171 TIDH------FDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 TI FDV++ E RV A +F + +RS VG++ VG+GK + L Sbjct: 212 TIRELQQFQWFDVSTPAEPETYEARVAADAFCWSMVRSLVGAVLTVGEGKRDGDFTAELL 271 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 + +R P+AP EGL V+Y Sbjct: 272 KQNERSSKVPVAPAEGLNLVQVDY 295 >gi|182415339|ref|YP_001820405.1| tRNA pseudouridine synthase A [Opitutus terrae PB90-1] gi|177842553|gb|ACB76805.1| tRNA pseudouridine synthase A [Opitutus terrae PB90-1] Length = 268 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 128/245 (52%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + Y+G + GWQ Q +G+S+Q +IE + + G V +HG+GRTD+GVHAL QV Sbjct: 10 RWKCVCAYDGGHFAGWQSQVSGASVQDAIEARLREMFGREVRIHGSGRTDAGVHALGQVF 69 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD P L AL A ++ I I + V +FHARF A + Y YR+ A Sbjct: 70 HFDAHWRHGPEKLLAALRA--RLPSAIQIKTVCAVTPEFHARFQASGKRYTYRLHLGDAD 127 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSFG 181 + +W + + LD M AA L GRHDF F +++ A +R + DV G Sbjct: 128 -PFTRPYSWPVFRPLDLAAMNAAAAVLRGRHDFRAFTALNGPARVDTVRDLRRLDVRRRG 186 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I A FL+ +RS VG L VG+GK T D+ L ++ R APP+GL+ Sbjct: 187 RVIRIIAEADGFLYKMVRSLVGVLVAVGEGKLTVHDVRAILASRQRTAVVQTAPPQGLFL 246 Query: 242 DSVEY 246 V Y Sbjct: 247 VRVFY 251 >gi|303231239|ref|ZP_07317977.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-049-V-Sch6] gi|302514146|gb|EFL56150.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-049-V-Sch6] Length = 261 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 12/248 (4%) Query: 6 MIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ G+Q+Q G ++QG++EKA+ ++ E + ++GA RTD+GVHA QV Sbjct: 6 LIVAYDGTDLAGYQKQPADKGITVQGALEKALSIICAEPIQIYGASRTDAGVHARFQVCA 65 Query: 64 FD----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 F + E +P L + +++ I I + R + + Y+Y I R Sbjct: 66 FQTSGSIPVENIPRATIAHLPKDIVVTEAIEI------PLDWKPRHNIFGKEYIYSIYNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + W + K LD E M A + L G HDF+T + + P++TI + Sbjct: 120 EIADPMGQRYHWHVKKPLDVEAMHQAGKALEGTHDFSTLKGANTTPVDPVKTIYAIGIKE 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+I VV FL+ +R+ G L VG G+ + + + L A+DRK G AP +GL Sbjct: 180 KAGRIDISVVGDGFLYHMVRNIAGLLVDVGLGRKSVAQIPELLAAKDRKRIGKTAPAQGL 239 Query: 240 YFDSVEYS 247 + + ++ Sbjct: 240 VLEEIFFT 247 >gi|313145437|ref|ZP_07807630.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] gi|313134204|gb|EFR51564.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] Length = 255 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 119/246 (48%), Gaps = 6/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ V GAGRTD+GVHA VA Sbjct: 8 RYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRRDTEVIGAGRTDAGVHASLMVA 67 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 68 HFDYEGEVLDTDKVTEKLNRLL--PQDISVYKVCRVRPDAHARFDATARTYKYYITTVKY 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + I LD + M AA L DFT+F +H + I I H + Sbjct: 126 P--FNRQYRYRIHNPLDFQKMNEAALTLFHYTDFTSFSKLHTDVKTNICKIMHAEWTQED 183 Query: 182 NLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK + + ++ QDR + G AP L+ Sbjct: 184 EYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDGFRRIIEQQDRCKAGTSAPGNALF 243 Query: 241 FDSVEY 246 +VEY Sbjct: 244 LVNVEY 249 >gi|158334430|ref|YP_001515602.1| tRNA pseudouridine synthase A [Acaryochloris marina MBIC11017] gi|158304671|gb|ABW26288.1| tRNA pseudouridine synthase A [Acaryochloris marina MBIC11017] Length = 292 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 118/256 (46%), Gaps = 15/256 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ S+Q IE + + V +HGAGRTDSGVHA QVA Sbjct: 10 RVALVIQYLGTHFHGWQRQPQHRSVQADIEDTLAEIVQHPVTLHGAGRTDSGVHAAAQVA 69 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ LNA ++ I I ++V +HARFSA R Y Y + T P Sbjct: 70 HFDVESPIPAHRWASVLNA--RLPQDILIRGSALVPSDWHARFSATWRRYRYTLYTDPCP 127 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID-------- 173 + +W + LD + M+ A L+GRH F +S P +D Sbjct: 128 NLFLRPYSWHYYYQPLDVQRMQAALDPLIGRHHLAAFHR--AGSSRPHSWVDVHEATCVQ 185 Query: 174 --HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + LI+I V A FL+ +R VG L VG G + + QA+ R + Sbjct: 186 RPTVEAKDSSPLIQIEVQASGFLYGMMRLLVGLLVQVGRGLRSPDSFTELWQAERRDQVK 245 Query: 232 PLAPPEGLYFDSVEYS 247 AP +GL V Y Sbjct: 246 YSAPAKGLCLLRVGYP 261 >gi|116493132|ref|YP_804867.1| pseudouridylate synthase [Pediococcus pentosaceus ATCC 25745] gi|116103282|gb|ABJ68425.1| Pseudouridylate synthase [Pediococcus pentosaceus ATCC 25745] Length = 248 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 13/253 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +RY +I+ Y+G+ + G+Q Q N +++G +++ + + T EI V +G+GRTD+GVHA Sbjct: 1 MRYKIILAYDGTNFAGFQMQPNQRTVEGVLKRIVNKIAKNPTPEISV-YGSGRTDAGVHA 59 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFDL E + ALN+ L + + + + IVD+ FHARF+ + Y YR+ Sbjct: 60 LGQVVHFDLSIEMSERSMLHALNSQLPLD--MQVKKVEIVDETFHARFTTHGKKYQYRMA 117 Query: 118 TRQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q P W P ++ ++ A + L G HDF++F + +RTI Sbjct: 118 LGQFVDPFKRNYTGHWKFPINIGL--IQKAIKDLEGTHDFSSFVASGSTVKDHVRTIYEA 175 Query: 176 DV--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V + N I FL+ +R V L +G + + D+ + + +DR + Sbjct: 176 KVWEDKKQNEIVFEFYGNGFLYNMVRIMVAVLVEIGSKRRPADDIPRLFEVKDRNQARGT 235 Query: 234 APPEGLYFDSVEY 246 AP GLY V+Y Sbjct: 236 APASGLYLKEVDY 248 >gi|212550510|ref|YP_002308827.1| tRNA pseudouridine synthase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229557952|sp|B6YQE4|TRUA_AZOPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212548748|dbj|BAG83416.1| tRNA pseudouridine synthase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 249 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 119/246 (48%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG ++Q I++ + ++ + V + GAGRTD+GVHA Sbjct: 1 MNRYFIYLAYNGRNYCGWQIQPNGITVQQRIQQCLSILLRKSVTIIGAGRTDAGVHANLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L K LN L I I + V K HARF AI R Y Y I ++ Sbjct: 61 TAHFDWEEILSTTSLTKRLNGILPCD--ILIYKIIPVKKNAHARFDAISRKYKYYITYQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E+ + + + L+ M A+ L DFT+F +H + + I + N+ Sbjct: 119 NPFRNEQ--LFRLKQPLNKHLMNEASNILSEYSDFTSFCKLHSNTRTNVCRISKAEWNTV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +RS VG++ +G K + TD K +++++ P L+ Sbjct: 177 QGIDIFTIKADRFLRNMVRSIVGTMIDIGKNKLSITDFRKIIESKNHIMLKSSVPAHALF 236 Query: 241 FDSVEY 246 +EY Sbjct: 237 LTDIEY 242 >gi|255007737|ref|ZP_05279863.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] Length = 252 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 119/246 (48%), Gaps = 6/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ V GAGRTD+GVHA VA Sbjct: 5 RYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRRDTEVIGAGRTDAGVHASLMVA 64 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 65 HFDYEGEVLDTDKVTEKLNRLL--PQDISVYKVCRVRPDAHARFDATARTYKYYITTVKY 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + I LD + M AA L DFT+F +H + I I H + Sbjct: 123 P--FNRQYRYRIHNPLDFQKMNEAALTLFHYTDFTSFSKLHTDVKTNICKIMHAEWTQED 180 Query: 182 NLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK + + ++ QDR + G AP L+ Sbjct: 181 EYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDGFRRIIEQQDRCKAGTSAPGNALF 240 Query: 241 FDSVEY 246 +VEY Sbjct: 241 LVNVEY 246 >gi|296111462|ref|YP_003621844.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154] gi|295832994|gb|ADG40875.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154] Length = 256 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/257 (34%), Positives = 133/257 (51%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTG---EIVVVHGAGRTD 52 M RY I+ Y+GSG+FG+Q Q KNG ++QG + KA+ + E + V GA RTD Sbjct: 1 MPRYKAIVSYDGSGFFGFQVQTKNGIERQRTVQGELTKAVNQMAKNPTEPIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + + K LN L + I + V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFDINENGVRKGLNTLLPRD--MLIKQVDKVTPDFHARFNTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T+ ++ LD E ++ A L+G HDF +F + Q ++ IRTI Sbjct: 119 IYRVSTQDFTDPFKRQYTGHFQWHLDIERIKSALPDLLGEHDFASFAASGNQTATTIRTI 178 Query: 173 DHFDVNSFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 DV + E+ +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 179 TRADVTIKPDDQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDILRLITVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D + Y+ Sbjct: 239 RFTAPASGLYLDQIYYN 255 >gi|297736816|emb|CBI26017.3| unnamed protein product [Vitis vinifera] Length = 326 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ ++I Y G+ Y GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA Sbjct: 46 KWRLVIAYEGTRYSGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWG 105 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + + ALN L I + +S +FHARFS + Y Y+I Sbjct: 106 QVAHFLTPFNYDGLESIHAALNGLL--PPDIRVREISPAVPEFHARFSVKSKIYHYKIYN 163 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFD 176 + + L+ MR AA+H G+HDF+ F S + ++ +P++ I FD Sbjct: 164 DAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFD 223 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL--- 233 VN G L+++ V FL+ Q+R+ V L +G + L +DRKE Sbjct: 224 VNEMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALS 283 Query: 234 APPEGLYFDSVEYS 247 APP GL SV+Y+ Sbjct: 284 APPHGLCLMSVKYN 297 >gi|116511297|ref|YP_808513.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris SK11] gi|123320604|sp|Q031N1|TRUA_LACLS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116106951|gb|ABJ72091.1| Pseudouridylate synthase [Lactococcus lactis subsp. cremoris SK11] Length = 253 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 17/256 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + L + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI--- 116 QV HFDL + + + + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDLNGKARDLERLR-FGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENS 119 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-- 174 +TR +P + P L+ E M+ A LVG+HDFT F + +RTI Sbjct: 120 VTR-SPFHRHSKAYFRYP--LNFELMQGAMAKLVGQHDFTGFTASGSSVDDKVRTIYQAE 176 Query: 175 ---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D +F + FL+ Q+R+ VG++ +G+ + + ++K L +++R G Sbjct: 177 IIQLDKENFKFIFR----GNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAG 232 Query: 232 PLAPPEGLYFDSVEYS 247 P A PEGLY V+Y Sbjct: 233 PTAAPEGLYLKEVKYE 248 >gi|225432191|ref|XP_002275097.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 336 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ ++I Y G+ Y GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA Sbjct: 56 KWRLVIAYEGTRYSGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWG 115 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + + ALN L I + +S +FHARFS + Y Y+I Sbjct: 116 QVAHFLTPFNYDGLESIHAALNGLL--PPDIRVREISPAVPEFHARFSVKSKIYHYKIYN 173 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFD 176 + + L+ MR AA+H G+HDF+ F S + ++ +P++ I FD Sbjct: 174 DAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFD 233 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL--- 233 VN G L+++ V FL+ Q+R+ V L +G + L +DRKE Sbjct: 234 VNEMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALS 293 Query: 234 APPEGLYFDSVEYS 247 APP GL SV+Y+ Sbjct: 294 APPHGLCLMSVKYN 307 >gi|289523335|ref|ZP_06440189.1| tRNA pseudouridine synthase A [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503027|gb|EFD24191.1| tRNA pseudouridine synthase A [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 268 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 125/247 (50%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQ 60 R+ ++ Y+GS + G+QRQK+ +++ ++E+A+ L+ G V V GAGRTD GVHAL Q Sbjct: 6 RFAALLSYDGSAFHGFQRQKDLPTVELALEEALNLLDKKGRRVKVTGAGRTDRGVHALGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ P L KAL A L S I + + VD FHAR SA+ R Y Y I Sbjct: 66 VVHFDISWPHGPTALRKALEANLPSS--IGVYEVVPVDFAFHARRSALWRKYAYFIWKGD 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L W + D + + + G HDF F + S RTI + Sbjct: 124 CRLPHLGRYVWWNRRGWDMDLAKKFLTMIEGFHDFGAFCRKADRPSDARRTIMEARIEEK 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+++ V RSFL +R VG++ + G+ + ++ + L R E GP AP +GL+ Sbjct: 184 GPLLKVSVTGRSFLTNMVRIIVGTMDEIATGRKSLEEVCRLLDGGSRGEAGPTAPAKGLF 243 Query: 241 FDSVEYS 247 V Y Sbjct: 244 LWEVRYD 250 >gi|288928084|ref|ZP_06421931.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 317 str. F0108] gi|288330918|gb|EFC69502.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 317 str. F0108] Length = 244 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 123/250 (49%), Gaps = 15/250 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + Y+G+ Y GWQ Q N +S+Q +++A+ L+ V + GAGRTD+GVHA VA Sbjct: 4 RYFIYFSYDGTSYHGWQIQPNANSVQAEMQRAMSLLLRHPVELVGAGRTDTGVHARTMVA 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ V L LN L I+I + VD HARFSA +R+Y Y I + P Sbjct: 64 HFDVDTPIDAVQLTYKLNRVLPFD--ITINAIKAVDADMHARFSATKRTYHYYIHLDRDP 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI------RTIDHFD 176 + ++ + ++ D + M AA+ L+ DF F H A + + R I D Sbjct: 122 FC--RAYSYALHQAPDFQLMNEAAEILLSHKDFGAFCKSHSDAKTTLCEVYEARWIKLSD 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +R+ A FL +R+ VG+L VG K T L ++ R++ G P Sbjct: 180 TK-----WHLRISANRFLRNMVRAIVGTLLDVGWHKITLEQFVDILHSKSRQQAGESVPG 234 Query: 237 EGLYFDSVEY 246 L+ + V+Y Sbjct: 235 HALFLEDVQY 244 >gi|282890956|ref|ZP_06299470.1| hypothetical protein pah_c032o038 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499171|gb|EFB41476.1| hypothetical protein pah_c032o038 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 254 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 7/246 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +II Y+G + GWQ+ G SI+ ++E + + E +++ A RTD+GVHA QV +F Sbjct: 6 LIISYDGGRFLGWQKTSMGPSIEENLENVLHQILQEPIILQAASRTDAGVHAHEQVVNFF 65 Query: 66 LVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P+ L K N+ + + I +L+ I FH + + Y Y I T Sbjct: 66 TEK---PIDLNKITNSLNRLLPKDIVVLDAQIAPDHFHPTLDCLSKEYRYYISTGPIQPP 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFDVN-SFG 181 + AW P LD E ++ AA+ LVG HDF+ F ++ S +R + + ++ + Sbjct: 123 NHRFYAWHCPGHLDKELIKKAAEQLVGTHDFSAFCNLKPSESYTHHVREVLNIQIHETDA 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + +V+ +SFL+ +R+ VG+L VG GK D+ L +DR + G AP GL Sbjct: 183 HHFYFQVMGKSFLYKMVRNIVGTLIFVGKGKLRCEDIPLLLSCRDRTKIGMTAPAHGLTL 242 Query: 242 DSVEYS 247 + Y+ Sbjct: 243 YRLNYA 248 >gi|120402449|ref|YP_952278.1| tRNA pseudouridine synthase A [Mycobacterium vanbaalenii PYR-1] gi|119955267|gb|ABM12272.1| tRNA pseudouridine synthase A [Mycobacterium vanbaalenii PYR-1] Length = 299 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 125/262 (47%), Gaps = 22/262 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G+I+ A+ V VV AGRTDSGVHA QV Sbjct: 21 VRLRLDIAYDGTDFAGWATQAGQRTVAGAIDDALSTVFRTPVVTRAAGRTDSGVHATGQV 80 Query: 62 AHFDLVREWVPVI--------------LCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P L + L L + + + ++ F ARFSA Sbjct: 81 AHVDVPADALPYAYPRTTRPGEAEFGPLVRRLGRMLP--EDVRVREITRAAPGFDARFSA 138 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 +RR YLYR+ T AP +E A + P+ LD M AA+ LVG HDF F H Sbjct: 139 LRRHYLYRLST--APYGVEPAEARFVTPWPRPLDVAAMAAAARELVGLHDFAAF-CRHRD 195 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + D G+ +E+ V A +F +RS VG+L VG+ + + L A Sbjct: 196 GATTIRELQRLDCVRDGDRVEVHVSADAFCWNMVRSLVGALLAVGEHRRDAAWCAALLDA 255 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R AP GL V+Y Sbjct: 256 TGRSSDFAAAPARGLTLVGVDY 277 >gi|73748346|ref|YP_307585.1| tRNA pseudouridine synthase A [Dehalococcoides sp. CBDB1] gi|289432394|ref|YP_003462267.1| tRNA pseudouridine synthase A [Dehalococcoides sp. GT] gi|73660062|emb|CAI82669.1| tRNA pseudouridine synthase A [Dehalococcoides sp. CBDB1] gi|288946114|gb|ADC73811.1| tRNA pseudouridine synthase A [Dehalococcoides sp. GT] Length = 246 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTRYSGFQIQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 TESSLGLEKIKGGLNYYL--PPDIAVKEVHFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L G HDF F S+ + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRRVNWTRLDIVEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +R+ A SFL Q+R+ +G L +G G + + +A+ GP AP GL V Sbjct: 179 ILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|255693609|ref|ZP_05417284.1| tRNA pseudouridine synthase A [Bacteroides finegoldii DSM 17565] gi|260620585|gb|EEX43456.1| tRNA pseudouridine synthase A [Bacteroides finegoldii DSM 17565] Length = 254 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 122/248 (49%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + A+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMNALSTFLRREIEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V + HARF A R+Y Y + T + Sbjct: 61 VAHFDYDEPLDTESVADKLNRLLPPD--ISVYRVCRVRPEAHARFDATARTYKYYVTTAK 118 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + R + LD E M AA+ L DFT+F +H + I I H + Sbjct: 119 YPFNRQYRCRVY---SPLDYERMNEAAKVLFEYTDFTSFSKLHTDVKTNICHITHAEWTR 175 Query: 180 FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + A FL +R+ VG+L VG GK + + ++ +DR + G AP + Sbjct: 176 EEDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLSIEGFRRIIEQKDRCKAGTSAPGQA 235 Query: 239 LYFDSVEY 246 L+ +VEY Sbjct: 236 LFLVNVEY 243 >gi|218129428|ref|ZP_03458232.1| hypothetical protein BACEGG_01005 [Bacteroides eggerthii DSM 20697] gi|317477530|ref|ZP_07936755.1| tRNA pseudouridine synthase A [Bacteroides eggerthii 1_2_48FAA] gi|217988158|gb|EEC54481.1| hypothetical protein BACEGG_01005 [Bacteroides eggerthii DSM 20697] gi|316906331|gb|EFV28060.1| tRNA pseudouridine synthase A [Bacteroides eggerthii 1_2_48FAA] Length = 251 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 116/248 (46%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSDAPLDVDFMADKLNRLLPPD--ISVYRLRAVRPDAHARFDATARMYKYYVTTAK 118 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + R + P D E M AAQ L DFT+F +H + I H Sbjct: 119 MPFDRQYRCRLFQTP---DFERMNEAAQTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQ 175 Query: 180 FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + A FL +R+ VG+L VG GK T + ++ +DR G P Sbjct: 176 VDEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVEGFRRIIEQKDRCRAGTSVPGNA 235 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 236 LFLVDVTY 243 >gi|57234742|ref|YP_181248.1| tRNA pseudouridine synthase A [Dehalococcoides ethenogenes 195] gi|57225190|gb|AAW40247.1| tRNA pseudouridine synthase A [Dehalococcoides ethenogenes 195] Length = 248 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 3/243 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 2 LLVIEYEGTRYSGFQVQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSY 61 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I++ + V + F R AI R Y Y+I+ + Sbjct: 62 LSESSLGLDKIKGGLNFYL--PPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRSP 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNL 183 L + +AW +P LD + M A + L G HDF F S+ + +R ++ + + Sbjct: 120 LARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRRVNWTRLGIREDR 179 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A SFL Q+R+ +G+L +G G + ++ E +A+ GP AP GL Sbjct: 180 LIFNIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLSLVR 239 Query: 244 VEY 246 V Y Sbjct: 240 VNY 242 >gi|288924968|ref|ZP_06418904.1| tRNA pseudouridine synthase A [Prevotella buccae D17] gi|288338158|gb|EFC76508.1| tRNA pseudouridine synthase A [Prevotella buccae D17] Length = 261 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 123/257 (47%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q +EKA+ L+ + GAGRTD+GVHA Sbjct: 1 MQRYFIYLNYDGTNYHGWQIQPNGNSVQEELEKALSLLLRTKTEIVGAGRTDAGVHARLM 60 Query: 61 VAHFDL----------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 VAHFD ++ LC LN L ISI + V + HARFSA+ R Sbjct: 61 VAHFDYEVGTTTEGQAAKDIDCPQLCYKLNRLL--PRDISIRKIIPVAQDMHARFSAVAR 118 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +Y Y I T + P E+ ++ +P +LD + MR + L + DF F S Sbjct: 119 TYHYYIHTGKMP--FERHYSYQMPYALDFDAMREGCELLKRQTDFAAFCKAGADNKSTCC 176 Query: 171 TIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ V + + A FL +R+ VG+L +G K T ++A R + Sbjct: 177 TVTEARWVKTSPGTWYFEITANRFLRNMVRAVVGTLVDLGRHKITLEQFRHIVEAGRRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ + VEY Sbjct: 237 AGESMPGHALFLERVEY 253 >gi|315608004|ref|ZP_07882997.1| tRNA pseudouridine synthase A [Prevotella buccae ATCC 33574] gi|315250473|gb|EFU30469.1| tRNA pseudouridine synthase A [Prevotella buccae ATCC 33574] Length = 284 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 123/257 (47%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q +EKA+ L+ + GAGRTD+GVHA Sbjct: 24 MQRYFIYLSYDGTNYHGWQIQPNGNSVQEELEKALSLLLRTKTEIVGAGRTDAGVHARLM 83 Query: 61 VAHFDL----------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 VAHFD ++ LC LN L ISI + V + HARFSA+ R Sbjct: 84 VAHFDYEVGTTTEGQEAKDIDCPQLCYKLNRLL--PRDISIRKIIPVAQDMHARFSAVAR 141 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +Y Y I T + P E+ ++ +P +LD + MR + L + DF F S Sbjct: 142 TYHYYIHTGKMP--FERHYSYQMPYALDFDAMREGCELLKRQTDFAAFCKAGADNKSTCC 199 Query: 171 TIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ V + + A FL +R+ VG+L +G K T ++A R + Sbjct: 200 TVTEARWVKTSPETWYFEITANRFLRNMVRAVVGTLVDLGRHKITLDQFRHIVEAGRRSD 259 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ + VEY Sbjct: 260 AGESMPGHALFLERVEY 276 >gi|38233160|ref|NP_938927.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae NCTC 13129] gi|38199419|emb|CAE49063.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae] Length = 295 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 130/263 (49%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ + ++Q IE + LV + + AGRTD+GVHA Sbjct: 13 VRIRLDLAYDGTDFHGWARQGDSDLRTVQKIIEDTLTLVLQRPIDLTVAGRTDAGVHATG 72 Query: 60 QVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L + D + I N+S V +F ARFSA+RR Sbjct: 73 QVAHFDVDPAALETRSIAGDPARLIRRLARLMP--DDVRIHNMSFVPAEFDARFSALRRH 130 Query: 112 YLYRIITRQ---APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YR+ T P W P+S+D M+ AA L+G HDF F + + +S Sbjct: 131 YVYRVTTHPRGALPTRARDTAHW--PRSVDISAMQAAADALIGMHDFAAF-CKYREGAST 187 Query: 169 IRTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 IR + F DV++ L E V A +F + +RS VG+ +VG+GK E L Sbjct: 188 IRDLQEFTWHDVSTPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEGKRADGFTEHLLG 247 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 R P+A GL V+Y Sbjct: 248 ETKRSSSIPVAAACGLSLVGVDY 270 >gi|332702220|ref|ZP_08422308.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis Bay] gi|332552369|gb|EGJ49413.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis Bay] Length = 266 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 118/247 (47%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ + G Q Q ++QG +E + + V + A RTDSGVHAL Q Sbjct: 1 MPRLKLTLAYTGTRFAGLQIQPGCRTVQGEVEAVLARMLNGPVRIDMAARTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 V H D+ + + KA+NA L D + + + +V +FH+RFSA + Y Y I + Sbjct: 61 VVHLDVPESKMRIPWRKAINALL--PDDVCVTEVEVVPPEFHSRFSATSKVYAYTIWSEL 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L K W + L+ M A QH VGRHDF +F+++ RT+ F Sbjct: 119 EFILPQRKPFVWRM-AGLNQTAMDKAMQHFVGRHDFKSFQNVGTPIRDTRRTVARFWREP 177 Query: 180 FGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E R+ A FL +R+ +G L VG GK D+ + +DR P AP Sbjct: 178 GQTQWETVYRIQADGFLKQMVRNIIGCLVAVGRGKLCPNDIPALIAVRDRSLAPPTAPSR 237 Query: 238 GLYFDSV 244 GL + + Sbjct: 238 GLCLERI 244 >gi|269798518|ref|YP_003312418.1| tRNA pseudouridine synthase A [Veillonella parvula DSM 2008] gi|269095147|gb|ACZ25138.1| tRNA pseudouridine synthase A [Veillonella parvula DSM 2008] Length = 261 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 129/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA QV Sbjct: 6 IIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAKFQVCT 65 Query: 64 FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +PV + +A+ A+ I I ++ + + R++ + Y+Y I + Sbjct: 66 FQ-TSGTIPVENIPRAMIAH--IPKDIVVIEAIEIPLDWKPRWNIYGKEYVYTIHNQLIA 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + W + K LD + M+ A LVG HDFTT + + + P++TI V + G+ Sbjct: 123 DPLTQRYHWHVKKPLDIDRMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVEARGS 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +GL + Sbjct: 183 QVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQGLCLE 242 Query: 243 SVEYS 247 + ++ Sbjct: 243 EIFFT 247 >gi|282857331|ref|ZP_06266568.1| tRNA pseudouridine synthase A [Pyramidobacter piscolens W5455] gi|282584831|gb|EFB90162.1| tRNA pseudouridine synthase A [Pyramidobacter piscolens W5455] Length = 247 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I Y+G + GWQ Q NG+++Q S+E+ + L+ G V V GAGRTD+GVHA Q Sbjct: 1 MPRYSCVISYDGGKFCGWQTQPNGATVQESLERVLSLLNGSPVKVTGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A F L REW P L ALNA L ++ + + F AR A+ R Y + + Sbjct: 61 TASFLLDREWEPRRLLLALNANLPEGAAVASVRERPIG--FDARRDALWREYAFFVWRGP 118 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + K W K D + +R L GRHDF+ F + +R + Sbjct: 119 FCYPMMKPYVWWKKKDDWDHDLIRRGCALLEGRHDFSAFCRAGDLPENAVRRMHFVRYIR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L R+ +FL +R +G+L V G+ T + LE L R + APP GL Sbjct: 179 RGRLSAFRIRGDAFLTNMVRIMIGNLDAVASGRRTLSWLEGLLDGASRGDSAMTAPPNGL 238 Query: 240 YFDSVEY 246 +F V Y Sbjct: 239 FFWKVGY 245 >gi|255324781|ref|ZP_05365895.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum SK141] gi|255298256|gb|EET77559.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum SK141] Length = 297 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 132/263 (50%), Gaps = 24/263 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 21 VRLRLDLAYDGTDFHGWAKQKGGLRTVQGVLEEKLAMIARTEVPLTVAGRTDAGVHARGQ 80 Query: 61 VAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ E + P L + L L + + + F ARFSA+RR Y Sbjct: 81 VAHVDVPTEMLAQRSVAGEPGKLVRRLAKLL--PEDVRVHGCEFAPAGFDARFSALRRHY 138 Query: 113 LYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +YRI T P W+ P +D + M+ AA LVG HDF F A++ I Sbjct: 139 VYRITTNPRGALPTRARDTAEWIKP--VDIDAMQEAATALVGLHDFAAFCKAKPNATT-I 195 Query: 170 RTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA-LQ 223 R + F DV++ L E RV A +F + +RS VG VG+G+ TD A LQ Sbjct: 196 RELQEFSWRDVSTPEEPELYEARVSADAFCWSMVRSLVGCCLRVGEGR-RDTDFAAALLQ 254 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 R P+AP +GL +V+Y Sbjct: 255 ETKRSSSIPVAPAKGLSLVAVDY 277 >gi|42559717|sp|P60349|TRUA_CORDI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 288 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 130/263 (49%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ + ++Q IE + LV + + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWARQGDSDLRTVQKIIEDTLTLVLQRPIDLTVAGRTDAGVHATG 65 Query: 60 QVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L + D + I N+S V +F ARFSA+RR Sbjct: 66 QVAHFDVDPAALETRSIAGDPARLIRRLARLMP--DDVRIHNMSFVPAEFDARFSALRRH 123 Query: 112 YLYRIITRQ---APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YR+ T P W P+S+D M+ AA L+G HDF F + + +S Sbjct: 124 YVYRVTTHPRGALPTRARDTAHW--PRSVDISAMQAAADALIGMHDFAAF-CKYREGAST 180 Query: 169 IRTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 IR + F DV++ L E V A +F + +RS VG+ +VG+GK E L Sbjct: 181 IRDLQEFTWHDVSTPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEGKRADGFTEHLLG 240 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 R P+A GL V+Y Sbjct: 241 ETKRSSSIPVAAACGLSLVGVDY 263 >gi|329945764|ref|ZP_08293451.1| putative tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 170 str. F0386] gi|328528212|gb|EGF55190.1| putative tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 170 str. F0386] Length = 308 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 131/277 (47%), Gaps = 34/277 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Q Sbjct: 14 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALATVLREPVRLAVAGRTDAGVHAAAQ 73 Query: 61 VAHFDLVRE-WVPV-----------ILCKALNAYLKISDT-----------ISILNLSIV 97 V H D+ E W + +L + + + T + + IV Sbjct: 74 VVHLDVSPEAWAALPGRSDRLPEAALLTRMAGVLAREAQTSLPRTPRGAGDVVVTGARIV 133 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRA---WLIPKSLDCENMRIAAQHLVGRHD 154 + F ARF A+ R Y YRI AP + RA WL P LD E M +A+ L+G HD Sbjct: 134 PEAFDARFGALSRRYTYRIADADAPRNPAR-RATVLWL-PDRLDVEAMEASAKPLLGEHD 191 Query: 155 FTTFRSIHCQASSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 F ++ Q ++ IRT+ + L+ + VVA +F H+ +RS VG+ VG Sbjct: 192 FLSYCKPR-QGATTIRTLRALEWRRVAAGPDAGLVTLSVVADAFCHSMVRSLVGAGLAVG 250 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+ + ++ L A+ R P+APP GL + V Y Sbjct: 251 QGRRPAAWPDELLAARSRDGAAPVAPPHGLTLEEVVY 287 >gi|307565293|ref|ZP_07627786.1| tRNA pseudouridine synthase A [Prevotella amnii CRIS 21A-A] gi|307345962|gb|EFN91306.1| tRNA pseudouridine synthase A [Prevotella amnii CRIS 21A-A] Length = 257 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 25/263 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q ++EKA+ ++ + + + GAGRTD+GVHA Sbjct: 3 MQRYFITLSYDGNNYHGWQIQPNGSSVQETLEKALTILLRQPISIIGAGRTDTGVHARMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ ++ + + LN L IS+ ++ V HARFSAI+R+Y Y + ++ Sbjct: 63 VAHFDMKSKFDNMQISYRLNRLL--PHDISVSSIIPVSNDMHARFSAIKRTYHYYLHLQK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + +L+ + M AA +L+G+ DF F C+ + ++T ++ Sbjct: 121 D--IYNRQYSCYVGYNLNFDLMNEAALYLIGKKDFKCF----CKTGADVKTTICNITEAY 174 Query: 181 GNLI----------EIR-------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 I +I+ + A FL +R+ VG+L VG GK + T + + Sbjct: 175 WKPIYPELSTLSSTDIKPTNWCFIISANRFLRNMVRAIVGTLIAVGRGKMSITKFKTIVD 234 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 R + G P L+ +EY Sbjct: 235 TGSRSDAGESMPGNALFLWDIEY 257 >gi|313893105|ref|ZP_07826682.1| tRNA pseudouridine synthase A [Veillonella sp. oral taxon 158 str. F0412] gi|313442458|gb|EFR60873.1| tRNA pseudouridine synthase A [Veillonella sp. oral taxon 158 str. F0412] Length = 261 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 4/244 (1%) Query: 6 MIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA QV Sbjct: 6 IIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSKICNEPIQIYGASRTDAGVHAKFQVCT 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + +A+ A+ I I +L + + R++ + Y+Y I + Sbjct: 66 FQTSGAIPAENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHNQLIAN 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L K W + K L+ E M+ A L+G HDFTT + + + P++TI V G Sbjct: 124 PLTKRYHWHVKKPLNIELMQAAGNELLGTHDFTTLKGTNSTPADPVKTIMGIQVEGEGPH 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +GL + Sbjct: 184 VTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQGLCLEE 243 Query: 244 VEYS 247 + ++ Sbjct: 244 IFFT 247 >gi|171910331|ref|ZP_02925801.1| putative tRNA pseudouridylate synthase I [Verrucomicrobium spinosum DSM 4136] Length = 258 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 127/265 (47%), Gaps = 31/265 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G + GWQ Q N ++Q +E A+ +TG V V G+GRTD+GVHAL QVA Sbjct: 5 RLKLTIAYDGRPWRGWQSQANSVTVQDQVETALRDLTGTQVNVQGSGRTDAGVHALAQVA 64 Query: 63 HFD------LVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 H D + RE WV +ALN +++ +I +++ +FHARF A+ + Y YR Sbjct: 65 HADVPDALKMGREAWV-----RALN--VRLPQSIRVMDCEDAAGEFHARFDAVGKIYCYR 117 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---------QAS 166 + E+GRAW + +LD + + A L G H+F + A Sbjct: 118 LWRGDVMSPFEQGRAWHVYGALDLDLLHHGAGILTGTHNFARLSANRGGMSEDERREDAE 177 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKAL 222 + RT+ D+ G +I I FL+ +R GSL V G+ W S DL Sbjct: 178 ALTRTVRRIDIIPEGEVIRIEFEGDGFLYKMVRLMTGSLVQVARGRERLEWLS-DLVGDP 236 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 +C AP +GLY V Y+ Sbjct: 237 SGLKSNQC---APADGLYLVKVFYA 258 >gi|147669126|ref|YP_001213944.1| tRNA pseudouridine synthase A [Dehalococcoides sp. BAV1] gi|146270074|gb|ABQ17066.1| tRNA pseudouridine synthase A [Dehalococcoides sp. BAV1] Length = 246 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTRYSGFQIQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 TESSLGLEKIKGGLNYYL--PPDIAVKEVHFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L G HDF F S + + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASGLGPEIKKTVRRVNWTRLDIAEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +R+ A SFL Q+R+ +G L +G G + + +A+ GP AP GL V Sbjct: 179 ILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|320160443|ref|YP_004173667.1| tRNA pseudouridine synthase A [Anaerolinea thermophila UNI-1] gi|319994296|dbj|BAJ63067.1| tRNA pseudouridine synthase A [Anaerolinea thermophila UNI-1] Length = 259 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 129/249 (51%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+QRQ ++Q +EKA+ L GE ++ +GRTD+GVHA Sbjct: 1 MARYKVILAYDGTHFQGFQRQAGARTVQAEVEKALRSLGWGEESLL-SSGRTDTGVHASG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FDL L ALNA ++ + ++ + V FH RF+AI R+YLYRII Sbjct: 60 QVIAFDLDWRHSLEALRNALNA--RLPEDVAAKQVEEVPGDFHPRFNAIERAYLYRIIVA 117 Query: 120 QAPLALEKGRAWLIPKSLDC-ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L + AW + L+ E ++ AAQ L G HDF+ F + + S +R I + Sbjct: 118 ETRDPLRERYAWRLWPPLEAPEALQSAAQALCGTHDFSAFGTPPVEGGSTLRHIYQAEWR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ V +FL+ +R V + VG + + D +A+Q Q R LAP G Sbjct: 178 ENGDEWLFEVRGNAFLYHMVRRMVWAQVQVGLNRLSLADFLEAVQ-QARPLPPGLAPAHG 236 Query: 239 LYFDSVEYS 247 L V Y+ Sbjct: 237 LVLTGVRYA 245 >gi|295132840|ref|YP_003583516.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] gi|294980855|gb|ADF51320.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] Length = 250 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 14/250 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQ Q S+Q +++A+ + + + V GAGRTD+GVHA + Sbjct: 1 MRYFIDLAYLGTAYHGWQIQPEAVSVQQVLQEALSKILQQNIEVVGAGRTDAGVHATQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD L LN++L ISI L V Q HARF A RSY Y I+ + Sbjct: 61 AHFDADLNCDEKTLQFKLNSFL--PKDISIRQLFKVQSQAHARFDACSRSYEYHIVNFKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID-----HFD 176 P ++ A+ + K D E M AA L D+T F+ ++ + ++T + F Sbjct: 119 PFKID--LAYYLLKQPDIEKMNHAAAML---KDYTNFKCF-SKSRTDVKTYNCNITAAFW 172 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 S LI + A FL +R+ VG+L +G GK + L++ L+++DR G P Sbjct: 173 EQSKDELI-FHITADRFLRNMVRAIVGTLLDIGLGKNSVEFLKEILKSEDRSMAGTSVPA 231 Query: 237 EGLYFDSVEY 246 GLY +EY Sbjct: 232 HGLYLTRIEY 241 >gi|168009447|ref|XP_001757417.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691540|gb|EDQ77902.1| predicted protein [Physcomitrella patens subsp. patens] Length = 299 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 121/244 (49%), Gaps = 23/244 (9%) Query: 18 WQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV 73 WQ QKN SIQ +E A+ T E+ +V GAGRTD+GVHA QVAHF P Sbjct: 36 WQIQKNYVSIQEKVEDALSKFTRLPRDELKLV-GAGRTDAGVHAWGQVAHFT-----TPT 89 Query: 74 ILC------KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 C +LN L I IL +S V FHAR+SA R++Y Y+ + Sbjct: 90 CFCDLEPLHTSLNGILP--PDIRILEVSSVQPDFHARYSACRKTYQYKAYVSPVMDPFQH 147 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS--PIRTIDHFDVNSFGNLIE 185 A+ I S++ M AA + VG H+F+ F + +S +R + F V+S G + Sbjct: 148 AYAYHIKNSVNIAAMEEAASYFVGTHNFSAFANHSADTASRDTLRDLLSFTVSSIGPQLL 207 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG---PLAPPEGLYFD 242 V +SF++ Q+R+ VG L VG + + L +DR+E P+AP GLY Sbjct: 208 FEVEGKSFMYKQVRNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYLM 267 Query: 243 SVEY 246 SV Y Sbjct: 268 SVGY 271 >gi|241895121|ref|ZP_04782417.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313] gi|241871617|gb|EER75368.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313] Length = 249 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 123/251 (49%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 M RY I Y+G+ +FGWQ Q N ++Q +E + + E + V G+GRTD+ VHA Sbjct: 1 MPRYKATIAYDGTDFFGWQVQPNKRTVQAEMELVVNKMAKNPAEHIRVQGSGRTDARVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHFDL + + K L+ L I I + V FHA+F+A ++Y YR Sbjct: 61 KGQVAHFDLPFDIPADAVRKGLSTMLPYD--IGIKKVEKVSDDFHAQFNAHNKTYFYRFS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHF 175 T + ++ + L+ E M+ A VG HD+ +F + Q + +RT+ Sbjct: 119 TSEYIDPFKRNYTGHWHRRLNPELMQQAIGDYVGEHDWLSFVASGYQQKTTVRTVYSAKM 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V I FL+ QIR VG L +G+G D+++ + +DR++ AP Sbjct: 179 WVKPEEEEIWFEFSGNGFLYNQIRIMVGVLLEIGNGVRPVDDIKRLFEVKDRQQAQFTAP 238 Query: 236 PEGLYFDSVEY 246 +GLY V+Y Sbjct: 239 AQGLYLMDVKY 249 >gi|160879036|ref|YP_001558004.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160427702|gb|ABX41265.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 248 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 5/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 +IIEY+GS Y GWQ+Q +IQ +E + + E V V GA RT++GVHA +QVA Sbjct: 6 LIIEYDGSRYDGWQKQAGNQKSITIQDKLEDVLNKMENETVTVIGAARTEAGVHAYKQVA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + + + LN +L I++L V ++FHA F+A Y Y+I + P Sbjct: 66 SFMTNSKLKVYEIKQYLNRFL--PRDIAVLEALEVPERFHASFNAGSFEYEYKISIGEVP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E+ + K D M+ AA++LVG+HDF F S R I ++ Sbjct: 124 SVFERKYNYYCFKRPDIAKMKEAAKYLVGKHDFKAFSDNKRMKKSTEREIYSLEIYGDEK 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I I V F +R VG+L VG K D+++ L+++DR + G +GL+ Sbjct: 184 EIVITVHGDDFWPHMVRIMVGTLLDVGLSKIEPMDIKRILESKDRDKAGETIEAKGLFLT 243 Query: 243 SVEYS 247 V Y Sbjct: 244 EVHYK 248 >gi|255086349|ref|XP_002509141.1| predicted protein [Micromonas sp. RCC299] gi|226524419|gb|ACO70399.1| predicted protein [Micromonas sp. RCC299] Length = 452 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 108/229 (47%), Gaps = 59/229 (25%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI------------------VV 44 RY + ++Y+G+ + G+QRQ N ++QG +E A+ G +V Sbjct: 64 RYLLRVQYDGTNFHGFQRQANARTVQGCVEDALDAFAGGGGGGGGGGGGDGADTMRSSIV 123 Query: 45 VHGAGRTDSGVHALRQVAHFDLV-----REWV-------PVILCKALNAYLK---ISDTI 89 HG+ RTD+GVHAL H DL RE P ++ ALN +LK D Sbjct: 124 THGSSRTDAGVHALDNTMHVDLPPRVSRREPTRALPPHEPHVVASALNHFLKKRGAPDVA 183 Query: 90 SILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL-EKGRAWLIPK------------- 135 + + FHARFSA R+Y YR+ P +L E+GR W + Sbjct: 184 VTRCIRVDPNAFHARFSATGRTYHYRMHVSPTPPSLFERGRVWHVCSGAGDRDAAGGGAD 243 Query: 136 ------------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 LD + MR+AA HLVG HDF+TFR+ CQASSP+RT+ Sbjct: 244 GCHENAGHDGRWGLDVDAMRVAAAHLVGTHDFSTFRASGCQASSPVRTL 292 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + V SFL+ Q+R V +L+ VG G+ + L A+ + +AP GLY Sbjct: 371 VVVTAVGPSFLYHQVRLMVATLRAVGAGEIDPASVPALLAARTPRAVPAMAPAHGLYLGR 430 Query: 244 VEY 246 V Y Sbjct: 431 VHY 433 >gi|288802284|ref|ZP_06407724.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18] gi|288335251|gb|EFC73686.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18] Length = 253 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 124/268 (46%), Gaps = 37/268 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E A+ + E + + GAGRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHALSTILRESIAITGAGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L +N L +S+ + V + HARFSA R+Y Y + T + Sbjct: 61 VAHFDTELSFDSAQLVYKVNRLLPRD--VSVSRIEPVGEDLHARFSATSRTYHYYVHTGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + +LD + M AA +L+G DF F C+ + ++T + Sbjct: 119 QPFS--RQYSCEFRYALDFDKMNEAAAYLIGEKDFKCF----CKTGADVKT-------TI 165 Query: 181 GNLIEIR----------------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 NL E R + A FL +R+ VG+L VG G+ + D Sbjct: 166 CNLTEARWIPANEEFALTTDNTVTNWCFVITANRFLRNMVRAVVGTLVEVGRGRLSLDDF 225 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 +K + R + G P L+ V+Y Sbjct: 226 KKIVDGGTRSDAGESMPGNALFLWEVKY 253 >gi|42527777|ref|NP_972875.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35405] gi|51316703|sp|Q73KE3|TRUA_TREDE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41818605|gb|AAS12794.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35405] gi|325474992|gb|EGC78178.1| tRNA pseudouridine synthase A [Treponema denticola F0402] Length = 268 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 8/247 (3%) Query: 6 MIIEYNGSGYFGWQRQ-KNGS----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + I Y+G+ + GWQ+Q K G+ ++QG +EKA+ + + +G+GRTDSGVHA RQ Sbjct: 12 LTISYDGTNFCGWQKQTKEGAETFRTVQGELEKALTKIHKHPIETNGSGRTDSGVHAARQ 71 Query: 61 VAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F ++ ALN+ L I +++ + V HARF+A+ R+Y Y+I Sbjct: 72 AVNFFCDIKSMRASNFLPALNSIL--PKDIRVMDAAEVSPLLHARFNALSRTYRYKIKCG 129 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A E+ W I + D + A L G D T F + Q+ S R I Sbjct: 130 KTIFAHEQPYTWHIRRYPDIAALNEMASCLSGELDCTAFSAAGDQSISKSRYIKKAVFFI 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A +FL +RS VG+L + + + D + L+++ R++ GP APP+GL Sbjct: 190 ENDYLIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQGL 249 Query: 240 YFDSVEY 246 + S+EY Sbjct: 250 FLWSIEY 256 >gi|261879379|ref|ZP_06005806.1| tRNA pseudouridine synthase A [Prevotella bergensis DSM 17361] gi|270333946|gb|EFA44732.1| tRNA pseudouridine synthase A [Prevotella bergensis DSM 17361] Length = 244 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I ++G+ Y GWQ Q NG S+Q +++ + + + + V GAGRTD+GVHA R Sbjct: 1 MRYFVWISFDGTAYHGWQIQPNGMSVQEKLQQGLTTLLRQPIEVTGAGRTDAGVHARRMA 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ RE L LN L IS + V+ + HARFSA +R+Y Y I T++ Sbjct: 61 AHFDIDRELNCEQLAYRLNRIL--PRDISCEKVVRVNDEMHARFSATKRTYRYFIHTQRN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSF 180 P E+ + + LD E M AA L+ DF F H + + + V + Sbjct: 119 P--FERFFSVEMNWQLDFEQMNQAAAILLETDDFKAFCKAHADNKTTLCKVTTARWVQTG 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL +R+ VG+L VG T + ++ R + G PP GL+ Sbjct: 177 PATYYFEISANRFLRNMVRAVVGTLIDVGRHNITLQQFSEIVEKGSRSDAGQSMPPHGLF 236 Query: 241 FDSVEYS 247 +EY Sbjct: 237 LWDIEYE 243 >gi|221195458|ref|ZP_03568513.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626] gi|221184645|gb|EEE17037.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626] Length = 281 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 120/249 (48%), Gaps = 19/249 (7%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF--DLV 67 Y G+ + G+ Q ++ G +++A+ V V + AGRTD+GV AL Q D Sbjct: 26 YRGAAFSGFAEQPKQRTVAGDLKQALTTVLRRPVELTCAGRTDAGVSALAQYVSVPVDAH 85 Query: 68 REWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 E +P L ++L A D ISI + F ARF A+ RSY YRI P+ L Sbjct: 86 EEKIPKRQLLRSLTAL--TDDDISIQEIYKAQSGFSARFDALARSYRYRISAGLRPV-LA 142 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG----- 181 AW +LD M AAQ VG HDF +F C+A S + H V S Sbjct: 143 WDHAWWYNGALDVAAMNEAAQIFVGEHDFKSF----CKALSAVDKPTHRYVESIQVAEIQ 198 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 LI I +V +FLHT +R+ VG+L VG G + + L A DRK+ GP AP + Sbjct: 199 EAGEKLIAIDIVGNAFLHTMVRTMVGTLVEVGRGHRATNWTREVLLACDRKKAGPTAPAK 258 Query: 238 GLYFDSVEY 246 GL F V Y Sbjct: 259 GLVFTGVLY 267 >gi|296121106|ref|YP_003628884.1| tRNA pseudouridine synthase A [Planctomyces limnophilus DSM 3776] gi|296013446|gb|ADG66685.1| tRNA pseudouridine synthase A [Planctomyces limnophilus DSM 3776] Length = 305 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 122/265 (46%), Gaps = 27/265 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y+G+ Y GWQ Q NG SIQ ++ +AI T E V++ AGRTD+GVHA+ QV F Sbjct: 10 LTIAYDGTAYCGWQTQPNGVSIQSTLMQAIQEFTAETPVLYAAGRTDAGVHAVGQVVSFS 69 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 AL +L D I I + V FHA+F A R YR + AP+ Sbjct: 70 TTSPVPAANFRPALQRFLP--DDIVIRQVEDVQPGFHAQFHA--RLKTYRYLFHNAPVWS 125 Query: 126 EKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI----------- 172 R + + LD + M A + +VG DF + + + +RT+ Sbjct: 126 PFYRQYALWHRTRLDEQAMDFAIRQIVGTFDFRSLETQWPNRKTSVRTVIKASVQRIRNW 185 Query: 173 ----------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + ++ G + + + A FL+ +R+ G+L +G GKW L + + Sbjct: 186 NLLGENGPPSEECQLDPEGEFLCMEITANGFLYNMVRTIAGTLIHIGRGKWGPEKLREIV 245 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 QDR+ G AP GLY V+Y+ Sbjct: 246 DLQDRRRAGETAPAHGLYLWHVDYA 270 >gi|126433747|ref|YP_001069438.1| tRNA pseudouridine synthase A [Mycobacterium sp. JLS] gi|126233547|gb|ABN96947.1| tRNA pseudouridine synthase A [Mycobacterium sp. JLS] Length = 299 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 125/263 (47%), Gaps = 22/263 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + R + + Y+G+ + GW Q ++ G I++A+ V V V AGRTD+GVHA Q Sbjct: 22 LTRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAGVHATGQ 81 Query: 61 VAHFDLVREWVP--------------VILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 VAH D+ + +P + L + L +L + I ++ F ARFS Sbjct: 82 VAHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPAD--VRIRDIIRAPTGFDARFS 139 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A+RR Y YR+ T AP +E A + P+ LD E M A LVG DF F H Sbjct: 140 ALRRHYTYRLGT--APYGVEPQSARFVTPWPRPLDVEAMNDAGSQLVGLRDFAAF-CRHR 196 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + ++ IR + + G+L+ V A +F + +RS VG+L VG+ + L Sbjct: 197 EGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEHRREPEWCAGLLS 256 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A R APP+GL V+Y Sbjct: 257 ATRRSSEFAAAPPQGLTLVGVDY 279 >gi|313892355|ref|ZP_07825947.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|329121372|ref|ZP_08249998.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] gi|313119214|gb|EFR42414.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|327469781|gb|EGF15247.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] Length = 266 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 7/247 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G+ Y G+QRQ+NG ++Q ++EK + +TG ++ RTD+GVHA Q F Sbjct: 6 ITVSYDGTEYAGFQRQENGFTVQEALEKVLKKLTGVHTTIYFVARTDAGVHAYGQECTFY 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 A+N+ L I +L + + F R + ++Y Y + + Sbjct: 66 TESSIPSERFKNAMNSLLPCD--IRVLKSKEMYEDFSVRKTNYGKTYAYILSEDKDINPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + W + LD + M+ A+ L G+HDFT+FR + + P+R I+ + +LI Sbjct: 124 LRKYVWYTGRKLDLQKMKEVAKVLEGKHDFTSFRGNNSVPADPVRFINEVRIIRKNSLIF 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL-----Y 240 + V FL+ +R+ VG+ G G T +++ L+A+DRK+ G APP+GL Y Sbjct: 184 VYVTGEGFLYHMVRNMVGAFVDAGRGIMTPERIKEILKAKDRKKLGVTAPPQGLALLKVY 243 Query: 241 FDSVEYS 247 F+ + + Sbjct: 244 FEPISHE 250 >gi|269218953|ref|ZP_06162807.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 848 str. F0332] gi|269212064|gb|EEZ78404.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 848 str. F0332] Length = 310 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 19/262 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW Q +++G++ +A+ L+TG + AGRTD+GVHA QVA Sbjct: 8 RLRLRMSYDGTDFHGWAVQPGLRTVEGTVTEALNLITGGSHALTVAGRTDAGVHARGQVA 67 Query: 63 HFDLVREWVPVIL------CKA----LNAYL-------KISDTISILNLSIVDKQFHARF 105 H D+ + C+A L+A L K S +++ + F ARF Sbjct: 68 HVDVSENELARAARRAGDPCQAIMRRLSALLARESPGPKGSSDVAVTGVDFAPAGFDARF 127 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y YR+ A + R L + + LD E M AA+ L G HDF ++ + Sbjct: 128 SALSRTYSYRVCDDPARFDPLRRRDVLWLREPLDVEAMGAAARKLTGEHDFISYCKPR-E 186 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + V G L+E+ A +F H+ +R+ VGSL VG G+ + L+ Sbjct: 187 GATTIRELLELKVERKGGLVEVTARADAFCHSMVRTLVGSLLKVGAGRRDEEWPARRLEE 246 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 + R +APP L +SVEY Sbjct: 247 RSRNGEVAVAPPHPLTLESVEY 268 >gi|15606137|ref|NP_213514.1| pseudouridine synthase I [Aquifex aeolicus VF5] gi|3929394|sp|O66953|TRUA_AQUAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2983318|gb|AAC06908.1| pseudouridine synthase I [Aquifex aeolicus VF5] Length = 241 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 5/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + + G+ ++GWQ Q N ++QG I+KA+ + E V V G RTDSGVHAL Sbjct: 1 MPNYLLRLAFVGTNFYGWQVQPNLRTVQGEIQKALSQILCEDVKVTGCCRTDSGVHALDY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F +++ L KALN L + + + V ++F+AR+S + YLY+I + Sbjct: 61 IANFKTQKDFPEEKLLKALNGIL--PKDVGVYAVKKVSEEFNARYSVKGKVYLYKIWNSE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +W + + ++ E +R + G HDF + + ++ I ++ +N Sbjct: 119 VRNPFLYPFSWQVKREINTEVLRNILKKFEGTHDFRALTKLEEERNTVI-NLEEVSLNVE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LIEIR+ A FL +R VG+ + G ++ LE+ LQ + APP+GL+ Sbjct: 178 YPLIEIRLKASHFLRYMVRRIVGTAVKISLGLYSEEVLEELLQGKGNSPYT--APPQGLH 235 Query: 241 FDSV 244 + V Sbjct: 236 LEKV 239 >gi|229489482|ref|ZP_04383345.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121] gi|229323579|gb|EEN89337.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121] Length = 294 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 126/250 (50%), Gaps = 7/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ + GW RQ + ++ G IE + V V + AGRTD+GVHA Q Sbjct: 20 LVRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRRPVQLTVAGRTDAGVHATGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D+ E +P + + + + + + +S+V F ARFSA+RR Y YR+ Sbjct: 80 VAHVDVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAMRRYYEYRVT-- 137 Query: 120 QAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A +E RA PK LD M+ A+ L+G H+F F + ++ +R + FD Sbjct: 138 NAAFGVEPLRARDTVSYPKPLDLGAMQEASNRLLGLHNFAAF-CKRREGATTVRELQRFD 196 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V A +F + +RS VG++ VG+G+ T+ + L R +AP Sbjct: 197 WTQVGTVFTAYVNADAFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETSRSSSILVAPA 256 Query: 237 EGLYFDSVEY 246 GL V+Y Sbjct: 257 HGLSLVRVDY 266 >gi|282859476|ref|ZP_06268581.1| tRNA pseudouridine synthase A [Prevotella bivia JCVIHMP010] gi|282587704|gb|EFB92904.1| tRNA pseudouridine synthase A [Prevotella bivia JCVIHMP010] Length = 255 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 128/259 (49%), Gaps = 17/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NGSS+Q ++EKAI ++ E + + GAGRTD+GVHA Sbjct: 1 MQRYFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLREPIAIIGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V HARFSA RR+Y Y + T++ Sbjct: 61 VAHFDFTGSVDCHQMVYRLNRLLP--HDISVSKIEPVTNDLHARFSASRRTYHYYLHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-------RSIHCQASS----PI 169 ++ + + +LD + M AAQ+L+G DF F ++ C+ + PI Sbjct: 119 N--IYQRQYSCYMSYALDFDLMNEAAQYLIGTKDFKCFCKAGADVKTTICELTEARWVPI 176 Query: 170 RTIDHFDVNSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 R ++S + + A FL +R+ VG+L VG GK + + + R Sbjct: 177 RAELSMPLSSKEQPTDWCFIISANRFLRNMVRAVVGTLVDVGRGKLSLEAFKAIVDGGTR 236 Query: 228 KECGPLAPPEGLYFDSVEY 246 + G P L+ V Y Sbjct: 237 SDAGESMPGNALFLWEVIY 255 >gi|332638011|ref|ZP_08416874.1| tRNA pseudouridine synthase A [Weissella cibaria KACC 11862] Length = 249 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 M RY I Y+G+ ++GWQ Q ++Q +EK + + + + V G+GRTD+ VHA Sbjct: 1 MPRYKATISYDGTEFYGWQVQPGKRTVQLEMEKVVNKMAKDPADHIRVQGSGRTDARVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFDL + + K L+ L I I ++ VD+ FHA+FSA ++Y YR+ Sbjct: 61 QGQVVHFDLPFDIPNEAVRKGLSTMLPYD--IGIKSVEKVDESFHAQFSAHNKTYRYRLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T + ++ + +D M+ A VG HD+ +F + Q + +RT+ + Sbjct: 119 TTEFIDPFKRNYTGHWHRRIDTSLMQQAIGDYVGEHDWLSFVASGFQQKTTVRTVYSAKM 178 Query: 178 NSFGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 EI FL+ QIR VG L +G+G D+++ +DR++ AP Sbjct: 179 WEKPEEDEIWFEFTGNGFLYNQIRIMVGVLLEIGNGSRPVDDIQRLFAVKDRQQARFTAP 238 Query: 236 PEGLYFDSVEY 246 +GLY SV+Y Sbjct: 239 AQGLYLMSVDY 249 >gi|254412106|ref|ZP_05025881.1| tRNA pseudouridine synthase A [Microcoleus chthonoplastes PCC 7420] gi|196181072|gb|EDX76061.1| tRNA pseudouridine synthase A [Microcoleus chthonoplastes PCC 7420] Length = 283 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 118/251 (47%), Gaps = 13/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ + ++Q IE+ + V G+ V +HGAGRTD+GVHA QVA Sbjct: 11 RIALVIQYLGTKFSGWQRQPHHRTVQAEIEQVLSTVEGKPVTLHGAGRTDTGVHAAAQVA 70 Query: 63 HFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HF+ R W+P+ LN+ ++ + I I + V +HARFSAI R Y Y I Sbjct: 71 HFNSSRPIPGERWMPI-----LNS--RLPEDILIRASAPVPANWHARFSAIWRRYRYSIY 123 Query: 118 TRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 T P + W LD ++ A L G+H F + T+ Sbjct: 124 TDACPNLFVRPFCWHYYHAPLDEHRIQEALNPLWGKHHLAAFHRANSGRKHSWVTVQDTH 183 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G+ I I + A FL+ +R VG L VG G + + Q R+ AP Sbjct: 184 CYRNGSFIHIEIQADGFLYGMVRLLVGMLVEVGRGNLNPHEFTQLWVNQQRERIKYSAPA 243 Query: 237 EGLYFDSVEYS 247 +GL V Y Sbjct: 244 KGLCLLRVGYP 254 >gi|317484413|ref|ZP_07943328.1| tRNA pseudouridine synthase A [Bilophila wadsworthia 3_1_6] gi|316924332|gb|EFV45503.1| tRNA pseudouridine synthase A [Bilophila wadsworthia 3_1_6] Length = 269 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 124/260 (47%), Gaps = 17/260 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ Y GWQ Q KN S +IQ IE A+ V GE V VHGAGRTD+GV Sbjct: 1 MPRLKLTIAYVGTQYHGWQTQARKNASPLPTIQNIIEDAVAHVLGERVHVHGAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + ALN L I I + +V FHA+ SA+R++Y YR Sbjct: 61 HAEAQVAHLDVPESRARMDWQLALNTLL--PRDIRIADAVLVPDTFHAQHSAVRKTYEYR 118 Query: 116 --IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 + R P L W +D E M +++L+G+ DF + ++ + +RTI Sbjct: 119 LWLSKRYTPPQLFP-FVWAC-GPVDVERMDEGSRYLLGKRDFASLKNAGTDLRTTVRTIL 176 Query: 174 HFDVNSFGNLIE------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 G L E R A FL +R+ +G L VG GK D+ L A DR Sbjct: 177 SITRTPEGQLPEDCLELTWRFEADGFLKQMVRNTMGLLVAVGRGKLEPADIPGILDACDR 236 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + AP GL V Y Sbjct: 237 RIAPLTAPACGLTMKKVWYD 256 >gi|315605929|ref|ZP_07880960.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 180 str. F0310] gi|315312211|gb|EFU60297.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 180 str. F0310] Length = 299 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 128/277 (46%), Gaps = 34/277 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q ++QG IE A+ + + E V AGRTD+GVHA Q Sbjct: 1 MRRLRLDLGYDGTDFRGWAAQPGLRTVQGEIEAALAMASREEVTTTVAGRTDAGVHARHQ 60 Query: 61 VAHFDLVRE-WVPVI-------------LCKALNAYL----------------KISDTIS 90 V H DL E W + + + LN L + + + Sbjct: 61 VCHVDLSDEAWARLAPRGERSEDDAATSIVRRLNKILSGRYGERSRTRGMGVARGTCDVR 120 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 I +VD F ARFSA+ R Y YR+ PLA R W + + LD + M AA L+ Sbjct: 121 IFAARVVDASFDARFSALARRYTYRVSDAPDPLA-RWDRLW-VDEPLDDQAMNDAAAPLL 178 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 G+HDF + + ++ IR + V + RV A +F H+ +RS VG+L LVG Sbjct: 179 GQHDFLGYCRPR-EGATTIRALRTLRAVREADGTLAFRVEADAFCHSMVRSLVGALLLVG 237 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G + L A+ R P+AP GL + V+Y Sbjct: 238 SGARNIDYPARVLGARSRASAAPIAPAHGLTLEGVDY 274 >gi|108798087|ref|YP_638284.1| tRNA pseudouridine synthase A [Mycobacterium sp. MCS] gi|119867183|ref|YP_937135.1| tRNA pseudouridine synthase A [Mycobacterium sp. KMS] gi|108768506|gb|ABG07228.1| tRNA pseudouridine synthase A [Mycobacterium sp. MCS] gi|119693272|gb|ABL90345.1| tRNA pseudouridine synthase A [Mycobacterium sp. KMS] Length = 299 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 125/263 (47%), Gaps = 22/263 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + R + + Y+G+ + GW Q ++ G I++A+ V V V AGRTD+GVHA Q Sbjct: 22 VTRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAGVHATGQ 81 Query: 61 VAHFDLVREWVP--------------VILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 VAH D+ + +P + L + L +L + I ++ F ARFS Sbjct: 82 VAHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPAD--VRIRDIIRAPTGFDARFS 139 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A+RR Y YR+ T AP +E A + P+ LD E M A LVG DF F H Sbjct: 140 ALRRHYTYRLGT--APYGVEPQSARFVTPWPRPLDVEAMNDAGSQLVGLRDFAAF-CRHR 196 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + ++ IR + + G+L+ V A +F + +RS VG+L VG+ + L Sbjct: 197 EGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEHRREPEWCAGLLS 256 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A R APP+GL V+Y Sbjct: 257 ATRRSSEFAAAPPQGLTLVGVDY 279 >gi|255326873|ref|ZP_05367949.1| tRNA pseudouridine synthase A [Rothia mucilaginosa ATCC 25296] gi|255296090|gb|EET75431.1| tRNA pseudouridine synthase A [Rothia mucilaginosa ATCC 25296] Length = 321 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 125/274 (45%), Gaps = 41/274 (14%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GS + GW Q N ++QG+IE A+ L+ V AGRTD+GVHA Q H DL E Sbjct: 27 YDGSLFSGWAAQPNLVTVQGAIENALELILRAPHRVVVAGRTDAGVHAEAQTLHCDLNDE 86 Query: 70 -WV-----------PVILCKALNAYLK-------------------ISDTISILNLSIVD 98 W L + L L+ + I I +S V Sbjct: 87 DWTRLQGRTGEDDPTAALGRRLTGALQRCLYDAEEQLNLPKNVRGILQGAIQIHRVSEVS 146 Query: 99 KQFHARFSAIRRSYLYRIITRQAP--LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 +F ARFSA R Y+YRI A L + W +P+ LDC ++ +AQ L+G DF Sbjct: 147 FEFDARFSATGRRYVYRIADGAANGLNPLHRTYTWAVPEHLDCADLNQSAQQLLGLRDFL 206 Query: 157 TFRSIHCQASSPIRTIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +F C+ TI SF LIE+RVVA +F H +RS VG+L L G GK Sbjct: 207 SF----CKPREGATTIRELRELSFTRTESGLIEVRVVADAFCHHMVRSLVGALVLYGTGK 262 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L + ++ R+ LAPP L + Y Sbjct: 263 RDAAWLRERIENPGREASLTLAPPHALALAEIYY 296 >gi|311740028|ref|ZP_07713862.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium ATCC 33035] gi|311305101|gb|EFQ81170.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium ATCC 33035] Length = 297 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 126/262 (48%), Gaps = 22/262 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 21 VRLRLDLAYDGTDFHGWAKQKGGLRTVQGVLEEKLAMIARTEVPLTVAGRTDAGVHARGQ 80 Query: 61 VAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ E + P L + L L + + + F ARFSA+RR Y Sbjct: 81 VAHVDVPTEMLAQRSVAGEPGKLVRRLAKLL--PEDVRVHGCEFAPAGFDARFSALRRHY 138 Query: 113 LYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +YRI T P W+ P +D + M+ AA LVG HDF F A++ I Sbjct: 139 VYRITTNPRGALPTRARDTAEWIKP--VDIDAMQEAATALVGLHDFAAFCKAKPNATT-I 195 Query: 170 RTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 R + F L E RV A +F + +RS VG VG+G+ + LQ Sbjct: 196 RELQEFSWRDASTPEEPELFEARVSADAFCWSMVRSLVGCCLRVGEGRRDADFAAALLQE 255 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R P+AP +GL +V+Y Sbjct: 256 TKRSSSIPVAPAKGLSLVAVDY 277 >gi|108804942|ref|YP_644879.1| tRNA pseudouridine synthase A [Rubrobacter xylanophilus DSM 9941] gi|108766185|gb|ABG05067.1| tRNA pseudouridine synthase A [Rubrobacter xylanophilus DSM 9941] Length = 257 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 116/246 (47%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++EY+G+G+ GW RQ +++G + +A+ V V + AGRTD+GVHA QV Sbjct: 1 MRLAGLVEYDGAGFSGWARQPGRRTVEGELSRALETVLRHPVRLTAAGRTDAGVHASGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD P L +A L S+ +++ F AR A RSY YRI+ Sbjct: 61 VSFDARDGTDPGTLAYKASAVL--SEDVALRRCVAAPPGFDARRDAASRSYEYRIVNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + RA + LD + AA+ ++G HDF F R + G Sbjct: 119 RSPLRRRRAVHVGYRLDERLLGEAARRVLGVHDFRAFTPAKSHHVRFERAVSESRWERCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ R+ A +FL+ +R+ VG++ V G+ E+ L R E GP AP GL Sbjct: 179 DLLVYRITADAFLYNMVRALVGTMLEVARGRRDLASFEELLGGARRAEGGPTAPARGLTL 238 Query: 242 DSVEYS 247 V Y+ Sbjct: 239 VRVRYA 244 >gi|294792824|ref|ZP_06757971.1| tRNA pseudouridine synthase A [Veillonella sp. 6_1_27] gi|294456723|gb|EFG25086.1| tRNA pseudouridine synthase A [Veillonella sp. 6_1_27] Length = 261 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 129/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA QV Sbjct: 6 IIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAKFQVCT 65 Query: 64 FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +PV + +A+ A+ I I +L + + R++ + Y+Y I + Sbjct: 66 FQ-TSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYIYTIHNQLIA 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + W + K L+ M+ A LVG HDFTT + + ++ P++TI V + G+ Sbjct: 123 DPLTQRYHWHVKKPLNIARMQAAGNELVGTHDFTTLKGTNSTSADPVKTIMGIRVEARGS 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I V+ FL+ +R+ G L +G G+ D++ L A+DR+ G AP +GL + Sbjct: 183 QVTISVIGDGFLYHMVRNIAGLLVDIGLGRRKVEDIKGYLAAKDRRAIGKTAPAQGLCLE 242 Query: 243 SVEYS 247 + ++ Sbjct: 243 EIFFT 247 >gi|289805625|ref|ZP_06536254.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 225 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 108/211 (51%), Gaps = 4/211 (1%) Query: 38 VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 + E + V AGRTD+GVH QV HF+ +NA L I++ + V Sbjct: 1 MANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL--PGDIAVRWVKTV 58 Query: 98 DKQFHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 FHARFSA R Y Y I R P L KG + LD E M AAQ L+G +DFT Sbjct: 59 PDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYY-EPLDAERMHRAAQCLLGENDFT 117 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +FR++ CQ+ +P R + H +V G + + + A +F+H +R+ VGSL VG + Sbjct: 118 SFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPES 177 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + L A+DR A EGLY +V+Y Sbjct: 178 WIAELLAARDRTLAAATAKAEGLYLVAVDYP 208 >gi|315649669|ref|ZP_07902753.1| tRNA pseudouridine synthase A [Paenibacillus vortex V453] gi|315274857|gb|EFU38233.1| tRNA pseudouridine synthase A [Paenibacillus vortex V453] Length = 266 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 127/262 (48%), Gaps = 22/262 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ Y G+Q Q G +IQ +E AI ++GE + + +GRTD+GVHA Q Sbjct: 1 MRNLLMRVSYDGTDYNGFQTQPGGHTIQDYLEDAIHRLSGEQLKIIASGRTDAGVHARAQ 60 Query: 61 VAHFDLVREWVPVIL---CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V +F P+ L C ALN +L + I + + V +FH+R +A R++Y Y I Sbjct: 61 VFNFYTAS---PIPLERWCMALNTWL--PEDIVVSDAMEVPMEFHSRHAAKRKTYRYTIN 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 Q P + LD M +HL+G +D+TTF S SS +RTI FD Sbjct: 116 ANQHPDLFNRRYQIHHYGQLDIPAMEQGLRHLIGTYDYTTFASRKSTKSSHVRTI--FDA 173 Query: 178 ------------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +I + FL +R +G+L VG+GK D++ L+A+ Sbjct: 174 WFERDTSMCRPGTRDQGVIHTYLSGNGFLQHMVRIIMGTLIEVGEGKRHPDDMKIILEAK 233 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 +R GP A +GL VEY Sbjct: 234 NRAAAGPTAMGKGLMLWEVEYD 255 >gi|320537307|ref|ZP_08037262.1| tRNA pseudouridine synthase A [Treponema phagedenis F0421] gi|320145772|gb|EFW37433.1| tRNA pseudouridine synthase A [Treponema phagedenis F0421] Length = 261 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 125/252 (49%), Gaps = 22/252 (8%) Query: 8 IEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 I Y+G+ + GWQ+Q KNG +IQG IEKA + + + GAGRTD+GVHA+ Q A Sbjct: 11 ISYDGTFFSGWQKQVKNGIETFPTIQGEIEKAASKIHKQKKEIIGAGRTDTGVHAIGQAA 70 Query: 63 HFDL------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +F + ++P A N+ L I +++ V Q HARFSA R+Y Y I Sbjct: 71 NFFTEIQTIEAKSFIP-----AFNSLL--PKQIRVVDAQEVSPQLHARFSAQARTYRYFI 123 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DH 174 + A E+ W I + D + A L G D T+F Q++S R I H Sbjct: 124 QCAKREFAHEQAYCWQIKRYPDISTLNRYAAVLRGELDCTSFSFAKDQSASKSRYIFSAH 183 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 F + + + + A +FL +RS G+L +T D +K L+ +DR GP A Sbjct: 184 FFIEK--DFLVFEISANAFLWRMVRSLTGTLLRCEKEHYTQNDFKKILELKDRGLAGPTA 241 Query: 235 PPEGLYFDSVEY 246 PP+GL+ + Y Sbjct: 242 PPQGLFLWHITY 253 >gi|282849896|ref|ZP_06259279.1| tRNA pseudouridine synthase A [Veillonella parvula ATCC 17745] gi|282580333|gb|EFB85733.1| tRNA pseudouridine synthase A [Veillonella parvula ATCC 17745] Length = 261 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA QV Sbjct: 6 IIVAYDGTDLVGYQKQSNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAKFQVCT 65 Query: 64 FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +PV + +A+ A+ I I +L + + R++ + Y+Y I + Sbjct: 66 FQ-TSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHNQLIA 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + W + K L+ M+ A LVG HDFTT + + + P++TI V + G+ Sbjct: 123 DPLTQRYHWHVKKPLNIARMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVEARGS 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I V+ FL+ +R+ G L +G G+ D++ L A+DR+ G AP +GL + Sbjct: 183 QVTISVIGDGFLYHMVRNIAGLLVDIGLGRRKVEDIKGYLAAKDRRAIGKTAPAQGLCLE 242 Query: 243 SVEYS 247 + ++ Sbjct: 243 EIFFT 247 >gi|306835272|ref|ZP_07468304.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726] gi|304568865|gb|EFM44398.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726] Length = 293 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 131/262 (50%), Gaps = 22/262 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 17 VRLRLDLAYDGTNFHGWAKQKGGLRTVQGVLEEQLAMIVRTEVPLTVAGRTDAGVHARGQ 76 Query: 61 VAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ +E + P + + L L + + + + F ARFSA+RR Y Sbjct: 77 VAHVDVPQEMLEQRSVAGDPGTIVRRLAKLL--PEDVRVHGCEFAPEGFDARFSALRRHY 134 Query: 113 LYRIIT--RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +YRI T R A P W P +D + M+ AA LVG HDF F A++ I Sbjct: 135 VYRITTSPRGALPTRARDTAEWFKP--VDIDAMQDAATALVGLHDFAAFCKAKPNATT-I 191 Query: 170 RTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 R + F DV++ L E RV A +F + +RS VG VG+G+ LQ Sbjct: 192 RELQEFSWQDVSTPEEPQLFEARVTADAFCWSMVRSLVGCCLSVGEGRRDVDFAAALLQE 251 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R P+AP +GL V+Y Sbjct: 252 TKRSSRIPVAPAKGLSLVQVDY 273 >gi|126663837|ref|ZP_01734832.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BAL38] gi|126624101|gb|EAZ94794.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BAL38] Length = 248 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 119/245 (48%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG + G+Q Q + SS+Q ++EKA+ + E + + GAGRTDSGVHA + Sbjct: 1 MRYFIEFAYNGKNFHGFQSQPDASSVQETLEKALSTLFREKIAIVGAGRTDSGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ E LN++L S I + + V HARF A R+Y Y + T + Sbjct: 61 AHFETELELDSEYWSHKLNSFLPPS--IVVYRIFKVTDNAHARFDASSRTYEYYMHTFKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W L+ + M A L +DF F +H ++ I G Sbjct: 119 AFITDG--SWYHSHQLNLDKMNEACAILFEYNDFECFSKVHTDVNTFNCKISEAHWKQVG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG++ +G GK DL +++++R + G P GLY Sbjct: 177 NQLIFTITADRFLRNMVRAIVGTMVNIGLGKIEVADLRTIIESKNRGKAGFSVPAHGLYL 236 Query: 242 DSVEY 246 +V Y Sbjct: 237 VNVRY 241 >gi|226305372|ref|YP_002765330.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4] gi|226184487|dbj|BAH32591.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4] Length = 294 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 127/250 (50%), Gaps = 7/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ + GW RQ + ++ G IE + V + V + AGRTD+GVHA Q Sbjct: 20 LVRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRQPVQLTVAGRTDAGVHATGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D+ E +P + + + + + + +S+V F ARFSAIRR Y YR+ Sbjct: 80 VAHVDVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAIRRYYEYRVT-- 137 Query: 120 QAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A +E RA PK LD M+ A+ L+G H+F F + ++ +R + FD Sbjct: 138 NAAFGVEPLRARDTVSYPKPLDLAAMQEASNRLLGLHNFAAF-CKRREGATTVRELQRFD 196 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V A +F + +RS VG++ VG+G+ T+ + L R +AP Sbjct: 197 WAQEGTVFTAYVNADAFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETLRSSSILVAPA 256 Query: 237 EGLYFDSVEY 246 GL V+Y Sbjct: 257 HGLSLVRVDY 266 >gi|310777852|ref|YP_003966185.1| tRNA pseudouridine synthase A [Ilyobacter polytropus DSM 2926] gi|309747175|gb|ADO81837.1| tRNA pseudouridine synthase A [Ilyobacter polytropus DSM 2926] Length = 243 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 121/239 (50%), Gaps = 5/239 (2%) Query: 9 EYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 EY+GSG+FG+QRQ + ++QG IE A+ +V E + + +GRTD GVHA QV++F Sbjct: 9 EYDGSGFFGFQRQPSARTVQGEIESALKVVLKEEINLASSGRTDRGVHAYMQVSNF-FTS 67 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 +P+ + L I + I I ++ V ++FHARFSA R+Y Y I A E Sbjct: 68 SKIPLDRLEFAVKNL-IPEDIKIHSMKNVSEEFHARFSAKSRAYEY--IMGWDRTAFETK 124 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLIEIR 187 I +D E + + +VGRH+F FR C +P+R I G N + + Sbjct: 125 YVSGIKGKVDPEKLYKILEPIVGRHNFEGFRLTDCSGKNPVRDISEIRCYPKGENKLAVY 184 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +FL +QIR +G+ V K L L+ D K+ +A GLY +EY Sbjct: 185 IKGNAFLKSQIRIIMGTALAVYFEKRPKNYLINKLKNPDSKDEKIVADGSGLYLCDIEY 243 >gi|227502701|ref|ZP_03932750.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725] gi|227076431|gb|EEI14394.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725] Length = 293 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 130/262 (49%), Gaps = 22/262 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 17 VRIRLDLAYDGTDFHGWARQKGGLRTVQGVLEEQLAMIARTEVPLTVAGRTDAGVHARGQ 76 Query: 61 VAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ +E + P L + L L + + + + F ARFSA+RR Y Sbjct: 77 VAHVDVPQEMLEQRSVANDPGKLVRRLAKLL--PEDVRVHGCDFAPEGFDARFSALRRHY 134 Query: 113 LYRIIT--RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +YRI T R A P W P +D M+ AA LVG HDF F A++ I Sbjct: 135 VYRITTSPRGALPTRARDTAEWFKP--VDIGAMQDAANALVGLHDFAAFCKAKPNATT-I 191 Query: 170 RTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 R + F DV++ L E RV A +F + +RS VG VG+G+ LQ Sbjct: 192 RELQEFSWQDVSTPEEPQLFEARVTADAFCWSMVRSLVGCCLSVGEGRRDVDFAAALLQE 251 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R P+AP +GL V+Y Sbjct: 252 TKRSSRIPVAPAKGLSLVQVDY 273 >gi|160878286|ref|YP_001557254.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160426952|gb|ABX40515.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 264 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 127/252 (50%), Gaps = 15/252 (5%) Query: 6 MIIEYNGSGYFGWQR---QKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +II Y+G+ Y GWQR NG SIQG +E+ + V E + + G+GRTD+GVHAL QV Sbjct: 13 LIISYDGTNYSGWQRIPKAANGDHSIQGLLEEFLSKVLLEPIKLIGSGRTDTGVHALGQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F I+ + +N L + I IL + VD FH+RF A+ + Y Y I T++ Sbjct: 73 ANFYSRSNLDVNIIRQKMNQVL--PEDIKILQANEVDLNFHSRFDAVEKIYQYIIDTKER 130 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---- 177 + ++ K LD E MR AA+ L+G D+ +F + S IRTI + Sbjct: 131 ESVFFRKYSYSCGKDLDIEAMRQAAKLLIGTMDYKSFCTDRKDGKSTIRTISEITIEELR 190 Query: 178 ---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 N G + R FLH IR G+L VG + + + +A+ + R+ G Sbjct: 191 QNRNQQGIIFTFR--GNGFLHHMIRIISGTLLEVGTQERSVESVRQAILGKKREYAGITL 248 Query: 235 PPEGLYFDSVEY 246 P+GL+ V Y Sbjct: 249 YPQGLFLKQVIY 260 >gi|294673952|ref|YP_003574568.1| tRNA pseudouridine synthase A [Prevotella ruminicola 23] gi|294472804|gb|ADE82193.1| tRNA pseudouridine synthase A [Prevotella ruminicola 23] Length = 244 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 9/247 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQ Q NG S+QG +++ + + + + + GAGRTD+GVHA A Sbjct: 4 RYFIWLSYDGTNYHGWQVQPNGISVQGELQRVLSTLLRQDISITGAGRTDAGVHARVMAA 63 Query: 63 HFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HF++ + I CK L + + I I + V HARFSA R+Y Y I TR+ Sbjct: 64 HFEIEAD----IDCKQLAYKMNRMLPQDIVIDRIEEVSLDMHARFSATERTYHYYIHTRK 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E+ + I LD E M A + L DF F H + + + + Sbjct: 120 CP--FERHYSCEIHYPLDFEKMNEAGRILCTYEDFGAFCKAHSDVKTTLCNVTRAEWIQT 177 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ V+ A FL +R+ VG+L VG G+ + + ++ + R + G P L Sbjct: 178 GDTTWYFVITANRFLRNMVRAVVGTLVDVGRGRLSLDEFRSVIEGKRRSDAGESMPGNAL 237 Query: 240 YFDSVEY 246 + + V+Y Sbjct: 238 FLEDVKY 244 >gi|164686559|ref|ZP_02210587.1| hypothetical protein CLOBAR_00126 [Clostridium bartlettii DSM 16795] gi|164604428|gb|EDQ97893.1| hypothetical protein CLOBAR_00126 [Clostridium bartlettii DSM 16795] Length = 201 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 106/202 (52%), Gaps = 3/202 (1%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 V +GRTD+GVHAL QVA+F + L ALNA K+ ISI++ VD FHAR Sbjct: 3 VTASGRTDAGVHALGQVANFKTESKIPADRLPDALNA--KLPKDISIISCEEVDIDFHAR 60 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 ++A ++Y Y I + L K ++ + LD + +R+ A+ L+G HDF F S Sbjct: 61 YNACGKTYRYLIYNKPYRSPLYKDLSYHVRYDLDLDKIRLEAKSLIGTHDFGGFMSSGSS 120 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 +RTI D+ +I I V FL+ +R VG+L +G G+ ++E+ + + Sbjct: 121 VKDTVRTIYDVDIQENDGMISIEVSGNGFLYNMVRIIVGTLVDIGRGRIKH-NMEEIINS 179 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 + R CG AP GL+ V Y Sbjct: 180 KSRSMCGHTAPAHGLFLKKVNY 201 >gi|270291103|ref|ZP_06197326.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4] gi|304385383|ref|ZP_07367728.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284] gi|270280499|gb|EFA26334.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4] gi|304328590|gb|EFL95811.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284] Length = 248 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 126/252 (50%), Gaps = 11/252 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 +RY + + Y+G+ + G+Q Q N +++G +++A+ + + + G+GRTD+GVHA Sbjct: 1 MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAVNKIAKNPQPEIPIFGSGRTDAGVHAF 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL E + ALN+ L + DT + + IVD+ FHARF+ + Y YR+ Sbjct: 61 GQVVHFDLPIEMTANNMLHALNSILPL-DT-QVKKVEIVDEDFHARFTTHGKRYQYRMAL 118 Query: 119 RQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + P W P S++ ++ A + L G HDF++F + A + +RTI Sbjct: 119 GEFVDPFKRNYTGHWKFPISIEL--IQQAIKDLEGTHDFSSFVASGSTAKNHVRTIYEAK 176 Query: 177 V--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + N I FL+ +R V L +G + D+ + L +DR + A Sbjct: 177 AWKDEAQNEIIFEFYGNGFLYNMVRIMVAVLVEIGSKRRPVDDIPRLLAVKDRNQARGTA 236 Query: 235 PPEGLYFDSVEY 246 P GLY V+Y Sbjct: 237 PASGLYLKEVDY 248 >gi|187734897|ref|YP_001877009.1| tRNA pseudouridine synthase A [Akkermansia muciniphila ATCC BAA-835] gi|238691867|sp|B2UNB6|TRUA_AKKM8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187424949|gb|ACD04228.1| tRNA pseudouridine synthase A [Akkermansia muciniphila ATCC BAA-835] Length = 265 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 117/258 (45%), Gaps = 15/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R Y+G Y GWQ Q G ++Q +E+A + G +HG+GRTD+GVHAL Q Sbjct: 1 MTRIRFTAAYDGRPYLGWQSQPGGRTVQDVLERAFSGLFGTTCRIHGSGRTDAGVHALGQ 60 Query: 61 VAHFDLV-REWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V H D +P ALN ++ TI I + V FHARFSA ++Y Y I Sbjct: 61 VFHADAPDTHRIPADKWPAALNT--RLPRTIRITHAEYVPPGFHARFSATGKTYRYCI-- 116 Query: 119 RQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI------R 170 +AP+ + G AW P + + + A G HDFT F ++ PI R Sbjct: 117 SRAPILNPFDAGLAWHRPLAWSVDILEQAVHLFRGTHDFTAFAALRGNEPRPIPEGYFRR 176 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 TI V G + I FL+ +R G+ GK T +L + + A + Sbjct: 177 TITQTQVAQTGEHVFITFTGTGFLYKMVRLMTGAAHEAARGKITLEELARLINAPLPDDK 236 Query: 231 GPL-APPEGLYFDSVEYS 247 P APP+GL V Y Sbjct: 237 SPFCAPPDGLTLMRVHYP 254 >gi|303247874|ref|ZP_07334142.1| tRNA pseudouridine synthase A [Desulfovibrio fructosovorans JJ] gi|302490775|gb|EFL50676.1| tRNA pseudouridine synthase A [Desulfovibrio fructosovorans JJ] Length = 265 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 119/254 (46%), Gaps = 9/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + GE VHGAGRTD+GVHA+ Sbjct: 1 MTRVRLTVAYDGTRFAGWQLQAPGMGRTVQGCLEEALARLCGEAARVHGAGRTDAGVHAV 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + +ALNA L ++ + D FHARF A + Y Y + T Sbjct: 61 AQVAHVDVPEARAGLPWQRALNALLPDDVSVVDAAVVPPD--FHARFDASGKIYQYTLWT 118 Query: 119 RQAP-LALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R L + W + + LD M A G HDF F++ + R + Sbjct: 119 RPGSILPWRRPYVWDVGRFSPLDVAAMDACAALFAGYHDFAAFQNAGSSVKTSTRLVHGV 178 Query: 176 DVNSFGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 N E+ R A FL +R+ +G+L VG GK D+ L R+ Sbjct: 179 SRLPQANSDEMVWRFHAEGFLKQMVRNLMGALVEVGRGKAAPEDIRSVLTLGQRRHAPRT 238 Query: 234 APPEGLYFDSVEYS 247 AP GL +VEY Sbjct: 239 APAGGLCLMAVEYG 252 >gi|317498140|ref|ZP_07956442.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316894617|gb|EFV16797.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 206 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 99/175 (56%), Gaps = 5/175 (2%) Query: 6 MIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + IEY+GS Y GWQR N ++IQG +E + +TGE V ++G+GRTD+GVHA QVA Sbjct: 7 LTIEYDGSRYQGWQRLGGDSNANTIQGKLESVLSKMTGEDVNINGSGRTDAGVHAYGQVA 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + L YL SD I I+ +S ++FH+R +A ++YLYRI Sbjct: 67 NFHTDCMMSVNEIKNYLTKYLP-SD-IGIVEVSEASERFHSRLNAKEKTYLYRIAIPGVS 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 E+ W P++LD + M AA L+G HDF F SI S +RTI + ++ Sbjct: 125 NVFERKYLWYFPETLDIKKMEEAASLLIGTHDFKGFSSIKKTKKSTVRTIYNIEI 179 >gi|257126804|ref|YP_003164918.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b] gi|257050743|gb|ACV39927.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b] Length = 251 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 8/247 (3%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ +Y+GS + G+QRQ ++QG IEK I + + + +GRTD GVHA+ QV++F Sbjct: 8 IVYQYDGSKFCGFQRQMGIKTVQGEIEKVISKTFFQNINMISSGRTDKGVHAIEQVSNF- 66 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 ++ + +P+ + + LN LK I IL++ +D++F++RF A R+YLY + Sbjct: 67 MIDQNIPLNAIKRQLNKRLK--GEIKILDIEEMDEKFNSRFDAQNRTYLYIMKVEDEITP 124 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----HFDVNSF 180 E I + +D + + +G+HDF++F +P+R I ++D N Sbjct: 125 FETNYITGIKEMIDIDKFQKIMLEFIGKHDFSSFMKKDKAYRNPVREIFFINCYYDKNGK 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + FL T +R +GS V GK ++K L+ D LA EGLY Sbjct: 185 EKQINIEICGNGFLKTMVRIMIGSALAVYFGKEEKNYIKKKLENPDADGKKILAGSEGLY 244 Query: 241 FDSVEYS 247 V Y Sbjct: 245 LYKVSYE 251 >gi|237739188|ref|ZP_04569669.1| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31] gi|229423788|gb|EEO38835.1| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31] Length = 246 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 120/244 (49%), Gaps = 15/244 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV++F Sbjct: 12 YDGSRYYGFQRQPNKETVQGEIEKILKIVTKEDINLISAGRTDRGVHANHQVSNF-YTSS 70 Query: 70 WVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +PV +L +AL I IL++ VD++F+AR A R Y+Y I + P Sbjct: 71 TIPVEKYKYLLTRAL------PKDIDILSVEEVDEKFNARHDAKMREYVYIISWEKNP-- 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NL 183 E + +D E + +G HDF FR C + +R I DV F N Sbjct: 123 FEARYCKFVKDKIDAERLEKIFSSFLGIHDFRNFRLSDCMSKVTVREIYSIDVKYFSENK 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 ++I + +FL +Q+R VG+ V ++ L ++ L EGLY + Sbjct: 183 LKICIRGSAFLKSQVRIMVGTALEVYYKNLPKNHIDLMLNDFSKEYKKSLVEAEGLYLNR 242 Query: 244 VEYS 247 + YS Sbjct: 243 INYS 246 >gi|317505831|ref|ZP_07963676.1| tRNA pseudouridine synthase [Segniliparus rugosus ATCC BAA-974] gi|316255913|gb|EFV15138.1| tRNA pseudouridine synthase [Segniliparus rugosus ATCC BAA-974] Length = 293 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 131/259 (50%), Gaps = 25/259 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHAL 58 +R + I Y+G+ + GW RQ ++ G+IE A+ F ++ V AGRTDSGVHA Sbjct: 21 VRLRLDIAYDGTEFSGWARQPGRRTVAGTIEAALGRLFQAPAQLTV---AGRTDSGVHAT 77 Query: 59 RQVAHFDLVREWV-----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 QVAH D+ E V P L + L A + SD + +L V KQF ARFSA+RR Y Sbjct: 78 GQVAHVDVSAELVSGRLPPDKLVRKL-ARMLPSD-VRVLAAREVSKQFDARFSALRRHYR 135 Query: 114 YRIITRQAPLALEKGRA-WLIP--KSLDCENMRIAAQHLVGRHDFTTFRSIHCQ---ASS 167 Y+I +AP + RA ++P + LD + A+ LVG HDF F C+ S+ Sbjct: 136 YQIT--RAPHGADPLRAREVVPWGRPLDLGLLNAASAALVGLHDFAAF----CRPRPGST 189 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + FD G L+ R+ A +F + RS +G++ V +G+ L A R Sbjct: 190 TIRELQRFDWTEDGPLLTARISADAFCWSMCRSLIGAVTAVAEGRREPGWAAALLTAPSR 249 Query: 228 KECGPLAPPEGLYFDSVEY 246 +AP GL V+Y Sbjct: 250 SSEIAVAPGHGLCLTGVDY 268 >gi|148655308|ref|YP_001275513.1| tRNA pseudouridine synthase ACD [Roseiflexus sp. RS-1] gi|166229831|sp|A5USG0|TRUA_ROSS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148567418|gb|ABQ89563.1| tRNA pseudouridine synthase A [Roseiflexus sp. RS-1] Length = 270 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 121/250 (48%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ + G Q Q NG S+QG +E A +TGE + AGRTD+GVHA Q Sbjct: 1 MRNIALRIEYDGADFVGSQWQTNGRSVQGVLEAAWQQLTGERRRMTLAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + LN L + + +L FHAR+SA+RR Y Y I + Sbjct: 61 VANVRTDTRHTISTIVRGLNGILP--EDVGVLAAWEAPDDFHARYSAVRREYRYVIDNGR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH---FDV 177 P L + A +P+ LD M + ++G HDF S Q S +R Sbjct: 119 TPSPLLRRHAAYVPRRLDTAAMDAVVRQVIGTHDFAPL-SDGPQEGSTVRICYEARCTRT 177 Query: 178 NSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +G L+ I + A +FL +R+ VG+L VG+G+ + L DR+ LAP Sbjct: 178 EVWGQPLVLIDIAANAFLRHMVRNLVGTLIQVGEGRIDADRFAAVLAGDDRR-ARVLAPA 236 Query: 237 EGLYFDSVEY 246 GLY +V Y Sbjct: 237 HGLYLMAVRY 246 >gi|256846563|ref|ZP_05552020.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_36A2] gi|256718332|gb|EEU31888.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_36A2] Length = 245 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 121/242 (50%), Gaps = 13/242 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF----D 65 Y+GS Y+G+QRQ ++QG IEK + +VT E + + AGRTD GVHA QV++F + Sbjct: 12 YDGSRYYGFQRQPKKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAYHQVSNFYTSSN 71 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E +L +AL + I IL++ VD+ F+AR +A R Y+Y I + P Sbjct: 72 IPIEKYKYLLTRAL------PNDIDILSVEEVDENFNARHNAKMREYIYIISWEKNP--F 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLI 184 E + + + E + VG HDF FR C + IR I +V FG N I Sbjct: 124 EARYCKFVKEKIVVEKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVKYFGENKI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + +FL +Q+R VG+ + G+ + L ++ L EGLY + + Sbjct: 184 KIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAEGLYLNKI 243 Query: 245 EY 246 Y Sbjct: 244 SY 245 >gi|260911484|ref|ZP_05918073.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 472 str. F0295] gi|260634413|gb|EEX52514.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 472 str. F0295] Length = 244 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 11/248 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + Y+G+ Y GWQ Q N +S+Q +++A+ L+ V + GAGRTD+GVHA VA Sbjct: 4 RYFIYFSYDGTAYHGWQIQPNANSVQAEMQRAMSLLLRHPVELVGAGRTDTGVHARTMVA 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD V L LN L I+I + +D HARFSA +R+Y Y + + P Sbjct: 64 HFDEEEPIDTVQLTYKLNRVLPFD--ITINQIKPIDGGLHARFSATKRTYHYYVHLDRDP 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + ++ + + D + M AAQ L+ DF F H A + + + N Sbjct: 122 FC--RAYSYALHQVPDFQLMNDAAQILLSHKDFGAFCKSHSDAKTTLCDVYEARWIRLSN 179 Query: 183 L-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK---ALQAQDRKECGPLAPPEG 238 R+ A FL +R+ VG+L VG W LE+ L ++ R++ G P Sbjct: 180 TKWHFRISANRFLRNMVRAIVGTLLDVG---WHKVSLEQFVDILHSKSRQQAGESVPGHA 236 Query: 239 LYFDSVEY 246 L+ + V+Y Sbjct: 237 LFLEDVQY 244 >gi|227512894|ref|ZP_03942943.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577] gi|227523022|ref|ZP_03953071.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290] gi|227083894|gb|EEI19206.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577] gi|227089840|gb|EEI25152.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 11/244 (4%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDL 66 Y+G+ + G++RQ N +I+G + + + ++ ++++G+GRTD+GVHA+ QVAHFD Sbjct: 2 YDGTNFSGFERQPNRRTIEGVLTQKVNVMAKLPEPPIIIYGSGRTDAGVHAVAQVAHFDF 61 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII--TRQAPLA 124 + + + LN+ L + + I + V FHAR+ + Y YR+ Q P Sbjct: 62 PFDLSAEAIYRGLNSMLPLD--MEITKVEKVSNDFHARYDVSGKKYFYRMYLGEFQNPFK 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVNSFGN 182 W P +D E + A LVG HDF++F + A S IRTI ++ N Sbjct: 120 RNYTGHWKFP--IDMEKVNHALADLVGEHDFSSFVASGSTARSNIRTIYSASAKLDQAEN 177 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + FL+ +R VG + +G G +D+ + + +DR + P GLY Sbjct: 178 EVHLEFYGNGFLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLK 237 Query: 243 SVEY 246 V Y Sbjct: 238 RVFY 241 >gi|227509961|ref|ZP_03940010.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190567|gb|EEI70634.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 11/244 (4%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDL 66 Y+G+ + G++RQ N +I+G + + + ++ ++++G+GRTD+GVHA+ QVAHFD Sbjct: 2 YDGTNFSGFERQPNRRTIEGVLTQKVNVMAKMPEPPIIIYGSGRTDAGVHAVAQVAHFDF 61 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII--TRQAPLA 124 + + + LN+ L + + I + V FHAR+ + Y YR+ Q P Sbjct: 62 PFDLSTEAIYRGLNSMLPLD--MEITKVEKVSNDFHARYDVSGKKYFYRMYLGEFQNPFK 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVNSFGN 182 W P +D E + A LVG HDF++F + A S IRTI ++ N Sbjct: 120 RNYTGHWKFP--IDMEKVNHALADLVGEHDFSSFVASGSTARSNIRTIYSASAKLDQAEN 177 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + FL+ +R VG + +G G +D+ + + +DR + P GLY Sbjct: 178 EVHLEFYGNGFLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLK 237 Query: 243 SVEY 246 V Y Sbjct: 238 RVFY 241 >gi|257457999|ref|ZP_05623158.1| tRNA pseudouridine synthase A [Treponema vincentii ATCC 35580] gi|257444712|gb|EEV19796.1| tRNA pseudouridine synthase A [Treponema vincentii ATCC 35580] Length = 265 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 125/248 (50%), Gaps = 14/248 (5%) Query: 8 IEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 I Y+G+ + GWQ+Q ++ ++QG +E+A+ L+ V + G+GRTD+GVHA Q A Sbjct: 16 ISYDGTRFHGWQKQLQHGEESFRTVQGEVERALALLHKHPVELFGSGRTDAGVHACGQAA 75 Query: 63 HF--DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HF D+ R P ALN+ L + I+ + V HARFSA R+Y Y + + Sbjct: 76 HFFTDIAR-IKPESFVPALNSALP--KDVRIIEAAHVSDNLHARFSARSRTYRYFVHCGK 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVN 178 A + W I + D + A L G D TTF + Q+ S R I HF + Sbjct: 133 TAFAHQLPYCWHIRREPDINLLNRMAGVLSGELDCTTFSAAGDQSKSKSRYIYTAHFFTD 192 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + A +FL +RS G+L T D E L+++DR+ G APP+G Sbjct: 193 R--DFLVFEISANAFLWRMVRSVTGTLLHYEQQNGTKEDFEAVLRSKDRRNAGETAPPQG 250 Query: 239 LYFDSVEY 246 L+ S++Y Sbjct: 251 LFLWSIDY 258 >gi|149279607|ref|ZP_01885736.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] gi|149229643|gb|EDM35033.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] Length = 283 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 10/249 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG+ Y GWQ Q N ++Q ++KA+ + + V G GRTD+GVHA + Sbjct: 36 RYFIELSYNGTEYHGWQIQPNAVTVQEDLDKALSVFFRQPVATVGCGRTDTGVHATQFFV 95 Query: 63 HFDLVREWV----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 HFDL E P +N+ L S I+I + VD + HARF A R+Y Y + Sbjct: 96 HFDLPAETASTLDPGRAVTGINSLL--SYQIAIGRIFAVDNEAHARFGATARAYHYHLHF 153 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDV 177 + P L R+WL SLD E M AA ++ DF+ F + Q ++ + ++ + Sbjct: 154 HKDPFKLN--RSWLYKGSLDVEAMNQAAAAILEYTDFSCFSKSNTQTFTNNCKVVEAYFT 211 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G L + + A FL +R+ VG+L VG + + + + + R G P Sbjct: 212 LTDGGL-QFTIRADRFLRNMVRAIVGTLIKVGKKEINLNEFREIIASGSRSNAGQSVPAC 270 Query: 238 GLYFDSVEY 246 GLY +V Y Sbjct: 271 GLYLVNVVY 279 >gi|33866624|ref|NP_898183.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8102] gi|42559753|sp|Q7TTT1|TRUA_SYNPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33633402|emb|CAE08607.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8102] Length = 299 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 114/239 (47%), Gaps = 4/239 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y GS + GWQRQ+NG+S+Q +E AI L + AGRTD+GVHA QV Sbjct: 17 RIALSLQYEGSAFCGWQRQRNGNSVQAQLEAAIEQLDPYRPIQTFAAGRTDTGVHAAGQV 76 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P ALN L TI + + K +HA +SA R Y Y I + Sbjct: 77 VHFDCGDRIPPAKWAPALNGRLPF--TIRVRESVLRPKDWHACYSATYRRYRYTIHNGRR 134 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +W LD MR A ++G HDF+ F + + T+ D+ Sbjct: 135 PNLFLAPWSWHRYQLRLDESRMRDALNGMLGLHDFSAFMRAGSRRAHARTTVQEVDLVRQ 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++ + + A FL+ +R + L VG+ + + D E+ + + R E AP GL Sbjct: 195 GDMVRVEIQASGFLYGMVRLLIAQLVAVGEHRLSVQDFEQRWRQRRRHEVREAAPGHGL 253 >gi|89890586|ref|ZP_01202096.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] gi|89517501|gb|EAS20158.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] Length = 251 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 119/244 (48%), Gaps = 4/244 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQRQ ++Q +E+ + + E + V GAGRTD+GVHA VA Sbjct: 6 RYFIELAYDGTAYHGWQRQPQSITVQEVLEEGLHKMLREQIKVQGAGRTDAGVHAAYMVA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD L LN +L I++ + V HARF A +RSY Y + R P Sbjct: 66 HFDYSGAIDLDHLVYRLNRWL--PKDIAVYEVKPVVNNAHARFHAYKRSYEYHFLLRPDP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + A+++ + D + M+ AA L DF F + + + + + Sbjct: 124 FQVMQ--AYVLFRKPDFKLMQEAAAILPEYKDFECFSRSNTDVKTYVCDLTEAYFEFKDH 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + A FL +R+ VG+L +G GK T DL + + ++DR G AP GL+ Sbjct: 182 KVIFHITANRFLRNMVRAVVGTLLDIGYGKKTIEDLREIIASKDRSNAGASAPAGGLFLT 241 Query: 243 SVEY 246 + Y Sbjct: 242 KIHY 245 >gi|54022806|ref|YP_117048.1| tRNA pseudouridine synthase A [Nocardia farcinica IFM 10152] gi|62901243|sp|Q5Z1K7|TRUA_NOCFA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54014314|dbj|BAD55684.1| putative tRNA pseudouridine synthase [Nocardia farcinica IFM 10152] Length = 257 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 16 FGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL 75 GW RQ ++QG +E A+ V E + + AGRTD+GVHA QVAHFD E+ L Sbjct: 1 MGWARQPGLRTVQGVLEDALGKVLREPIQLTVAGRTDAGVHAEGQVAHFDTAAEFDGPQL 60 Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW-LIP 134 L +L + + +V F ARFSAIRR Y+YR+ T AP E A ++P Sbjct: 61 VHRLARFLP--KDVRVKRADVVPPDFDARFSAIRRHYVYRLTT--APYGAEPLAARSVVP 116 Query: 135 --KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARS 192 ++D + MR A+ L+G HDF F + ++ +R + FD G+L+ V A + Sbjct: 117 CKSAVDVDAMRRASGLLLGLHDFAAF-CRRREGATTVRELQRFDWERQGDLLLAHVSADA 175 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 F + +RS VG++ VG+G+ + + L+ R +AP GL +V+Y Sbjct: 176 FCWSMVRSLVGAVLAVGEGRRSPEWVAGLLRETQRSSSVTVAPAHGLSLVAVDY 229 >gi|254430842|ref|ZP_05044545.1| tRNA pseudouridine synthase A [Cyanobium sp. PCC 7001] gi|197625295|gb|EDY37854.1| tRNA pseudouridine synthase A [Cyanobium sp. PCC 7001] Length = 306 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 117/251 (46%), Gaps = 8/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 R + ++Y+G + GWQRQ N S+Q ++E AI ++ AGRTD+GVHA Sbjct: 13 RIALCLQYDGGAFHGWQRQHNAPSVQAALEDAIAILDPPAARPRPPRTWAAGRTDTGVHA 72 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFD KALN ++ TI ++ S V +HA +SA R Y Y I Sbjct: 73 AAQVVHFDSCGPIPAGRWPKALNG--RLPPTIRVMAASQVPPDWHACYSATYRRYRYTIF 130 Query: 118 TRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +AP +W LD M A Q ++G HDF+ F+ + T+ Sbjct: 131 NGRAPNLFLAPWSWHRYQYRLDENAMVQALQGMLGEHDFSAFQRTGSRRRHARTTLQDVL 190 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+L+ + + A FL+ +R +G L VG+G+ + + + +DR APP Sbjct: 191 LEREGDLLRVELQASGFLYGMVRLVLGQLVAVGEGRLSPEAFARRWRHRDRGAVKEAAPP 250 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 251 HGLCLLRVGYP 261 >gi|288574694|ref|ZP_06393051.1| tRNA pseudouridine synthase A [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570435|gb|EFC91992.1| tRNA pseudouridine synthase A [Dethiosulfovibrio peptidovorans DSM 11002] Length = 247 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 122/248 (49%), Gaps = 7/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++Y + + Y G+ + GWQ Q + ++Q +E+A+ ++ G V V GAGRTDSGVHA QV Sbjct: 1 MKYALELSYEGNHFSGWQLQPDSITVQEVLEEALTVLEGAPVKVSGAGRTDSGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F+L + W P L A+NA L + +S++ S V F AR SA+ R Y Y + + Sbjct: 61 ASFELSKTWDPYRLTLAVNANLP--EHVSVMRASAVPDDFDARRSALWREYAYFVWHGPS 118 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + W + D + + + LVG HDF F + + +RT+ F V Sbjct: 119 CFPHVRDMVWWRKRDDWDMDAVDGCCRALVGEHDFGAFCRLSECPENAVRTL--FSVRHI 176 Query: 181 --GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L R+ + FL +R +G++ V GK E+ L R + AP G Sbjct: 177 RRGRLSIFRIRGKGFLTNMVRIILGNIDAVATGKKRLEWFERLLLGGTRVDSATTAPASG 236 Query: 239 LYFDSVEY 246 L+F V Y Sbjct: 237 LFFWRVGY 244 >gi|318042539|ref|ZP_07974495.1| tRNA pseudouridine synthase A [Synechococcus sp. CB0101] Length = 294 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 117/247 (47%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y+G+ Y GWQRQ S+Q ++E+AI L + V AGRTD+GVHA QV Sbjct: 23 RIALCLQYDGAPYCGWQRQPRDPSVQETLERAIAALDPRRPLSVQAAGRTDTGVHAAAQV 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ALN L S I + + V +HA FSA R Y Y + + Sbjct: 83 VHFDAEGPIPAQRWPAALNGRLPAS--IRVRAGAEVPADWHACFSASYRRYRYTLYNARL 140 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +W LD + MR A + ++G HDF F S T+ V Sbjct: 141 PNLFLAPWSWHRYQLRLDEQLMRQALEGMLGEHDFAAFERAGSSRSHSRTTLQEVTVERR 200 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LIE+ + A FL+ +R +G L VG+ + + E+ +++ R E APP GL Sbjct: 201 GDLIEVELQASGFLYGMVRLVMGQLVAVGEQRLSLAAFERRWRSRARDEVKEAAPPHGLT 260 Query: 241 FDSVEYS 247 V Y Sbjct: 261 LLRVGYP 267 >gi|225010595|ref|ZP_03701066.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] gi|225005424|gb|EEG43375.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] Length = 218 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 116/217 (53%), Gaps = 6/217 (2%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTIS 90 +E+A L+ + + GAGRTD+GVHA + VAHFD + I+ LNA+L + IS Sbjct: 1 MEQAFSLLLATPIELMGAGRTDAGVHAKKMVAHFDTELGFDKQIIKDRLNAFL--AADIS 58 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 I + V ++ HARF+A R+Y Y ++ ++ P + A + + LD ++M AAQ L+ Sbjct: 59 IDQILAVTQETHARFTATSRTYEYIVVNQKDPF--QHHGAHYVFQPLDIQSMNKAAQILL 116 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 G DF F + + I I H V + G L+ + A FL +R+ VG+L +G Sbjct: 117 GEKDFECFSKSNSDVHTFICDITHAKWVATKGQLV-FTITANRFLRNMVRAIVGTLLEIG 175 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GK TD+ L+ + R + GP P +GLY + Y Sbjct: 176 TGKRPVTDIPLLLETKSRSKAGPSVPAKGLYLTQINY 212 >gi|312199990|ref|YP_004020051.1| tRNA pseudouridine synthase A [Frankia sp. EuI1c] gi|311231326|gb|ADP84181.1| tRNA pseudouridine synthase A [Frankia sp. EuI1c] Length = 297 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 126/255 (49%), Gaps = 20/255 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTD+GVHA RQV Sbjct: 30 RLRIDLAYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDAGVHAARQV 89 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH D+ E L + LN L + + IL + F ARFSA+ R Y YRI A Sbjct: 90 AHVDIPDEVPLGGLARRLNGVLDRA--VRILGIGPAPVGFDARFSALSRRYNYRI--SDA 145 Query: 122 PLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTID 173 P + R AW P+ LD MR+AA L+G HDF F C + ++ +RT+ Sbjct: 146 PYGADPLRRHDTLAW--PRPLDPAVMRLAALALLGEHDFAAF----CRRREGATTVRTLL 199 Query: 174 HFDVNSFGNLIEIR-VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 DV + + + V A +F H+ +R+ VG+L VG+G+ + + L R Sbjct: 200 RLDVRRGPDGVLVADVEADAFCHSMVRALVGALVGVGEGRQPPGWIPQMLARAVRSPGVT 259 Query: 233 LAPPEGLYFDSVEYS 247 + P GL V Y Sbjct: 260 VLPAHGLTLVEVRYP 274 >gi|308178101|ref|YP_003917507.1| tRNA pseudouridylate synthase A [Arthrobacter arilaitensis Re117] gi|307745564|emb|CBT76536.1| tRNA pseudouridylate synthase A [Arthrobacter arilaitensis Re117] Length = 311 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 127/261 (48%), Gaps = 19/261 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 IR M++ Y+G+ Y GW RQ N +Q +E+A+ ++ V V AGRTD+GVHA RQV Sbjct: 25 IRMRMVLGYDGAAYSGWARQPNVLGVQQLVEEALEMLIRRQVRVVVAGRTDAGVHARRQV 84 Query: 62 AHFDLVREWVPVI-----------LCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 HFDL E + L + +N L D + + + F ARFSA+ Sbjct: 85 VHFDLTEEEYTSLPRKAPLAPGPALVRRINGILGRQDGAVWVHEAERAPEGFDARFSALA 144 Query: 110 RSYLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R Y YRI Q PL + W + LD E M A+ ++GRHDF T+ A+ Sbjct: 145 RRYSYRIADGQQRWDPLTRQLT-TWHR-EELDVEAMNREARSVLGRHDFLTYCKPRPHAT 202 Query: 167 SPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + IRT+ F + L+ + A +F H +R+ +G+ +VGDG+ L + L+ Sbjct: 203 T-IRTLQEFTFTRGADGLVLAHLKADAFCHNMVRALIGAAMMVGDGREQPGFLAERLELM 261 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R L+ P L + V Y Sbjct: 262 VRDSKTKLSHPRALVLEEVYY 282 >gi|299140694|ref|ZP_07033832.1| tRNA pseudouridine synthase A [Prevotella oris C735] gi|298577660|gb|EFI49528.1| tRNA pseudouridine synthase A [Prevotella oris C735] Length = 243 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NG S+Q +++A+ + + + + GAGRTD+GVHA Sbjct: 1 MQRYFIYLSYDGSAYHGWQIQPNGISVQEKLQEALSKLLRQKIEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L LN L I+I + V+ HARFSA R+Y Y I T++ Sbjct: 61 VAHFDFPKSIEEEQLRYRLNRLL--PRDITINKVIPVEADMHARFSAKWRTYRYYIHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNS 179 A + ++ P LD + M A+ L DF F S + TI V + Sbjct: 119 D--AFLRHYSYESPYKLDYQLMNQGAELLKSHTDFAAFCKTGADNKSTLCTIRESKWVQT 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L L+G + DL+ LQ DR G P L Sbjct: 177 SAISWYFEITANRFLRNMVRATVGTLFLLGRHHISLDDLDYILQEGDRSNAGESMPGHAL 236 Query: 240 YFDSVEY 246 + +++EY Sbjct: 237 FLENIEY 243 >gi|261749109|ref|YP_003256794.1| putative tRNA pseudouridine synthase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497201|gb|ACX83651.1| putative tRNA pseudouridine synthase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 247 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 122/246 (49%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG Y GWQ Q +S++G +E + + + + GAGRTD GVHA + Sbjct: 1 MRFFIELSYNGKSYHGWQIQSEVNSVEGQLEYCLSKLLNTSINIVGAGRTDRGVHAKQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD E + K LN +L +I + N+ V K HARF+A+RR+Y Y + + + Sbjct: 61 AHFDF-EEKISNNFVKRLNLFL--PKSIYVSNIFPVKKHIHARFNALRRTYKYYLKSEKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +W LD + M +A+Q L+ DF++F + I I H D + Sbjct: 118 PFF--QDFSWHCFYPLDIQRMNLASQILMKYKDFSSFCKKRKDKKNNICDIYHADWSRNK 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLY 240 + A FL +RS +G+L VG GK + + ++ ++ C P P GL+ Sbjct: 176 IHFCFTIEANRFLRNMVRSIIGTLIDVGRGKISINQFIEIIELKNPNTCSSPSVPACGLF 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LTKILY 241 >gi|253582682|ref|ZP_04859903.1| tRNA pseudouridine synthase A [Fusobacterium varium ATCC 27725] gi|251835552|gb|EES64092.1| tRNA pseudouridine synthase A [Fusobacterium varium ATCC 27725] Length = 246 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 120/246 (48%), Gaps = 10/246 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 IRY ++GS ++G+QRQ ++QG IEK + +V E V + AGRTD GVHAL QV Sbjct: 10 IRY----RFDGSMFYGFQRQPGKRTVQGEIEKLLEVVLREKVNMISAGRTDRGVHALEQV 65 Query: 62 AHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 ++F +PV K ALN L + I I + VD F++RF A R Y Y I + Sbjct: 66 SNF-FTTSPIPVEKLKYALNKGLPLD--IEIFEVEEVDMNFNSRFFAKNRGYKYIISWVK 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E L+ + +D E + L+G HDF FR C + + IR I V Sbjct: 123 NP--FESRYVTLVREKIDKEIFFKILEPLIGVHDFNNFRLSDCGSKTSIREIYSIVVEEK 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + + + SFL +QIR +G+ + G + L L+ + +A P GLY Sbjct: 181 ENKLIVEIKGNSFLKSQIRIIIGTALDIYFGNYDENHLRDMLENPKKDFLKKVADPYGLY 240 Query: 241 FDSVEY 246 + Y Sbjct: 241 LSEINY 246 >gi|221632949|ref|YP_002522172.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159] gi|221155520|gb|ACM04647.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159] Length = 279 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 129/258 (50%), Gaps = 16/258 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + Y G+ + G QRQ ++QG +E+A+ + GE V V AGRTD+GVHA+ QVA Sbjct: 5 RYRLDFGYEGTAFSGSQRQPGLRTVQGVLEEALARLAGEPVRVALAGRTDAGVHAVGQVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 FDL L +AL A+L + + + ++ + FHAR A+ R Y YRI + P Sbjct: 65 SFDLCWRHDEATLARALQAWL--PEDVVVYRVARMPAGFHARRGAVDREYRYRIWQGEQP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSP-IRTIDHFD-- 176 + W LD M+ AAQ +G HDF +F +A++P +RTI + Sbjct: 123 PLFLRRFVWRFAGLLDLRAMQEAAQFFLGSHDFRSFAGHGLGGPKATTPRVRTITMAEWH 182 Query: 177 --------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 V + ++E RV A FL +R+ V +L VG G + + + L+ DR+ Sbjct: 183 LLSPVVEPVGTGAQIVEFRVRANGFLPQMVRTMVSALVRVGTGAAEPSWISELLERCDRR 242 Query: 229 ECGPLAPPEGLYFDSVEY 246 P APP GL V Y Sbjct: 243 AAPPPAPPGGLVLWRVRY 260 >gi|118473191|ref|YP_885908.1| tRNA pseudouridine synthase A [Mycobacterium smegmatis str. MC2 155] gi|118174478|gb|ABK75374.1| tRNA pseudouridine synthase A [Mycobacterium smegmatis str. MC2 155] Length = 291 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 124/263 (47%), Gaps = 22/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G I++A+ V VV AGRTD+GVHA QV Sbjct: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALTTVFRTPVVTRVAGRTDTGVHATGQV 70 Query: 62 AHFDLVREWVP--------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ E +P L + L +L + + ++ F ARFSA Sbjct: 71 AHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPAD--VRVRDIVRAPAGFDARFSA 128 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 +RR Y+YR+ T AP E + + LD + M AAQ L+G +DF F Sbjct: 129 LRRHYVYRLTT--APYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAG 186 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 A++ IR + + G I V A +F +RS VG+L VG+G+ + + L A Sbjct: 187 ATT-IRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGA 245 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 R P AP GL +V+Y Sbjct: 246 TSRSSEFPAAPARGLTLAAVDYP 268 >gi|289449823|ref|YP_003475752.1| tRNA pseudouridine synthase A [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184370|gb|ADC90795.1| tRNA pseudouridine synthase A [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 274 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 122/245 (49%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ E++G+ Y GWQ Q N +IQ +++KA+ + + V+V+G RTD+GVHA V++F Sbjct: 7 ILTEWDGTAYGGWQIQANAPTIQENLQKALEKLCHKSVLVNGCSRTDAGVHARGHVSNFH 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALNA L + I++ + + F+ARF A + Y Y I + AL Sbjct: 67 FDSSIPVANIPLALNAMLP--EDIAVQAATEMPLDFNARFDACGKQYSYYICNTKLRHAL 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF----G 181 + + L MR AA ++ G HDF F + Q S +RT+ D+ S+ G Sbjct: 125 YSRYSCCEARPLSAAAMREAAGYIEGTHDFACFMASGGQVKSTVRTVYSVDLVSYPICGG 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I V FL+ +R G+L VG K D+ + L++ R E G P GL+ Sbjct: 185 AIWRIIVRGNGFLYNMVRIIAGTLLYVGLNKLNPQDVREVLRSGHRSEAGKTLPACGLFL 244 Query: 242 DSVEY 246 D V Y Sbjct: 245 DRVFY 249 >gi|281425834|ref|ZP_06256747.1| tRNA pseudouridine synthase A [Prevotella oris F0302] gi|281400095|gb|EFB30926.1| tRNA pseudouridine synthase A [Prevotella oris F0302] Length = 243 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NG S+Q +++A+ + + + + GAGRTD+GVHA Sbjct: 1 MQRYFIYLSYDGSAYHGWQIQPNGISVQEKLQEALSKLLRQEIEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L LN L I+I + V+ HARFSA R+Y Y I T++ Sbjct: 61 VAHFDFPKSIEEEQLRYRLNRLL--PRDITINKVIPVEADMHARFSAKWRTYRYYIHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNS 179 A + ++ P LD + M A+ L DF F S + TI V + Sbjct: 119 D--AFLRHYSYESPYKLDYQLMNQGAELLKSHTDFAAFCKTGADNKSTLCTIRESKWVQT 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L L+G + DL+ LQ DR G P L Sbjct: 177 SAISWYFEITANRFLRNMVRATVGTLFLLGRHHISLDDLDYILQEGDRSNAGESMPGHAL 236 Query: 240 YFDSVEY 246 + +++EY Sbjct: 237 FLENIEY 243 >gi|167752124|ref|ZP_02424251.1| hypothetical protein ALIPUT_00366 [Alistipes putredinis DSM 17216] gi|167660365|gb|EDS04495.1| hypothetical protein ALIPUT_00366 [Alistipes putredinis DSM 17216] Length = 390 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 120/248 (48%), Gaps = 8/248 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQRQ + S+Q +IE AI + E +++ GAGRTD+GV+A V Sbjct: 126 MRYFIELRYNGGAYCGWQRQPDMPSVQQTIEGAISTLLREPILLTGAGRTDTGVNASYYV 185 Query: 62 AHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD P + LN L I++ + V HARFSA R Y Y I R+ Sbjct: 186 AHFDTSSPVADPEQVVFKLNHMLP--GDIAVSRIVPVAADAHARFSAREREYRYYIEPRK 243 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--VN 178 P + +P LD M AA L+ DFT+F ++ + I + D V Sbjct: 244 NPFTRAASWQYYVP--LDVAAMNRAADVLMEYEDFTSFAKLNSDNKTNICHLKRADWTVG 301 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L + A FL +R+ VG+L VG G++T + ++D AP +G Sbjct: 302 RDGTLC-FTIRADRFLRNMVRAIVGTLVDVGRGRYTVEQFRDIVASRDLSRSSAGAPAQG 360 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 361 LFLSDVLY 368 >gi|169630847|ref|YP_001704496.1| tRNA pseudouridine synthase A [Mycobacterium abscessus ATCC 19977] gi|169242814|emb|CAM63842.1| tRNA pseudouridine synthase A [Mycobacterium abscessus] Length = 294 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 130/263 (49%), Gaps = 22/263 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ + GW Q N ++ G + +A + G+ V ++ AGRTD+GVHA Q Sbjct: 15 LVRLRLDIAYDGTDFAGWATQVNQRTVAGVLGEAFTTIVGDSVQLYAAGRTDAGVHATGQ 74 Query: 61 VAHFDLVREWVPVI--------------LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 VAH D+ +P + L + L+ +L SD + +L++S F ARFS Sbjct: 75 VAHLDVPVACLPGLRGRYRPAGAPEFDRLVRRLSRFLP-SD-VRVLDISRAPAHFDARFS 132 Query: 107 AIRRSYLYRIITRQ---APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A+RR Y YR+ T PLA W P LD + M A+++L+G DF F H Sbjct: 133 ALRRHYEYRLSTASFGVLPLARHDVVGWHRP--LDVDAMNEASRNLLGLRDFAAF-CRHR 189 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + ++ IR + FD G + V A +F + +RS VG++ VG+G+ L Sbjct: 190 EGATTIRELQRFDWGVDGQRLTAYVSADAFCWSMVRSLVGAVLAVGEGRRPVQWCVDLLN 249 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 + R AP GL V+Y Sbjct: 250 KERRSSDFAAAPARGLTLVGVDY 272 >gi|22297651|ref|NP_680898.1| tRNA pseudouridine synthase A [Thermosynechococcus elongatus BP-1] gi|34222849|sp|Q8CWM6|TRUA_THEEB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22293828|dbj|BAC07660.1| tRNA-pseudouridine synthase I [Thermosynechococcus elongatus BP-1] Length = 284 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 117/247 (47%), Gaps = 7/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ ++Q IE+AI V V V AGRTD+GVHA QVA Sbjct: 13 RLALLIQYQGTHFHGWQRQVGQRTVQEVIEQAIASVVNHPVSVVAAGRTDTGVHAAGQVA 72 Query: 63 HFDLVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H V +PV LNA ++ + I + V +HARFSA+ R Y Y + T Sbjct: 73 HVT-VNSPIPVHRWPGILNA--RLPADVVIRAAAAVPPDWHARFSALWRRYRYTLYTDPC 129 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 P + W LD M Q LVGRH + F RS +A S + + Sbjct: 130 PNIFLRPWTWHYYYAPLDVAKMAAVLQPLVGRHHLSAFHRSGSNRAHSWVE-VQAVSCQR 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+EI V A FL+ +R VG L VG G+ + + Q + R APP GL Sbjct: 189 RGALVEIEVQASGFLYGMMRLLVGLLVQVGQGQRSPASFTEIWQQEQRHLVKYAAPPSGL 248 Query: 240 YFDSVEY 246 V Y Sbjct: 249 CLLGVGY 255 >gi|237741391|ref|ZP_04571872.1| tRNA pseudouridine synthase A [Fusobacterium sp. 4_1_13] gi|229430923|gb|EEO41135.1| tRNA pseudouridine synthase A [Fusobacterium sp. 4_1_13] Length = 245 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 13/242 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF----D 65 Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA QV++F + Sbjct: 12 YDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQVSNFYTSSN 71 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E +L +AL + I IL++ VD+ F+AR +A R Y+Y I ++ P Sbjct: 72 IPIEKYKYLLTRAL------PNDIDILSVEEVDENFNARHNAKMREYIYIISWKKNP--F 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLI 184 E + + + + + VG HDF FR C + IR I +V FG N I Sbjct: 124 EARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVKYFGENKI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + +FL +Q+R VG+ + G+ + L ++ L EGLY + + Sbjct: 184 KIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAEGLYLNKI 243 Query: 245 EY 246 Y Sbjct: 244 SY 245 >gi|325105198|ref|YP_004274852.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145] gi|324974046|gb|ADY53030.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145] Length = 258 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 127/253 (50%), Gaps = 19/253 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + + Y+G Y GWQ Q N ++Q ++ A+ GE + G GRTD+GVHA + A Sbjct: 6 RFFIELSYHGLQYHGWQYQPNAITVQEKLDNALSTFFGEKIESLGCGRTDTGVHATQFYA 65 Query: 63 HFDLVREW---VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD +E+ + K +N+ L I++ +L V + HARF AIRRSY Y I Sbjct: 66 HFDTEKEFSENSEIRFLKGINSLLPYD--IAVKHLHQVHEDAHARFDAIRRSYEYHIHFN 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID------ 173 + P + +WL + L+ + M I A +++ DF F C+A++ T + Sbjct: 124 KNP--FKTYTSWLHKEPLNVDAMNIGASYILDYEDFGAF----CKANAGNFTNNCIVSRA 177 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 ++V + G I + A FL +R+ VG+L +G GK+ ++ ++++ R G Sbjct: 178 EWEVKNDG--IIFHITANRFLRNMVRAIVGTLTDIGKGKYAPEHIKHIIESKKRSSAGAS 235 Query: 234 APPEGLYFDSVEY 246 P GL V Y Sbjct: 236 VPACGLLLTEVCY 248 >gi|254495151|ref|ZP_05108075.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] gi|85819501|gb|EAQ40658.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] Length = 241 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q + S+Q + A+ + + + V GAGRTD+GVHA + Sbjct: 1 MRYFIELSYNGKNYHGWQIQPDVISVQEKLNSALSTIFQQDIQVVGAGRTDTGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ + K LN+ L I + + +VD + HARF A+ RSY Y+I + Sbjct: 61 AHFDVDKNLKGDFAFK-LNSIL--PKDIVVYKVFLVDDEKHARFDAVSRSYEYKIWLGRN 117 Query: 122 PLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L+ +W I + D + M AA+ L DF TF + + + + Sbjct: 118 PFLLD--FSWQIHSQKPDLKLMNEAAKLLTEYTDFQTFSKVKTEVYTFNCDVTEAFWEQK 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + A FL +R+ VG+L VG GK + D +++++R G P +GL+ Sbjct: 176 GEELTFHISANRFLRNMVRAIVGTLLDVGFGKISIDDFRNIIESKNRGNAGLSVPAKGLF 235 Query: 241 FDSVEY 246 ++Y Sbjct: 236 LTQIKY 241 >gi|284035717|ref|YP_003385647.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] gi|283815010|gb|ADB36848.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] Length = 252 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 125/254 (49%), Gaps = 20/254 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQ Q NG SIQ ++E A+ G+ V + G+GRTD+GVHA +Q Sbjct: 1 MRYFIELSYRGTAYHGWQTQANGISIQITLEAALSQRLGKPVYIMGSGRTDAGVHAKQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD P+ + ++L L + + I+I + V + HARFSAI R Y Y ITR Sbjct: 61 AHFDSEE---PLDITESLIYSLNCMLPEDIAIHAIFPVSDKTHARFSAISRYYQYH-ITR 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-------IHCQASSPIRTI 172 Q A + + L+ + M A L+ +F +F HCQ Sbjct: 117 QKD-AFQGTLTYHFRPQLNVDRMNEACTLLLRHTNFQSFSKARANVTHFHCQLEFAYWRY 175 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + D +F + A FL +R+ VG++ +G + + EK + A+DRK G Sbjct: 176 TNVDCLTF------HIKANRFLWGMVRTIVGTMLEIGQERMSLEQFEKIILARDRKIAGR 229 Query: 233 LAPPEGLYFDSVEY 246 AP GLY V Y Sbjct: 230 AAPANGLYLVEVGY 243 >gi|262039471|ref|ZP_06012775.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264] gi|261746538|gb|EEY34073.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264] Length = 249 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 6/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+ +Y+GS ++G+QRQKN ++QG IEK I + + + +GRTD GVHAL QV++F Sbjct: 9 MVYQYDGSKFYGFQRQKNKKTVQGEIEKVILKNFSQKINMISSGRTDKGVHALGQVSNF- 67 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + E +P+ + + +N L I IL++ + ++F++RF A R+YLY + + Sbjct: 68 FIDEKIPLEAIKRQINKNL--YGEIKILSVEEIKREFNSRFDAKSRTYLYIMKKEEEITP 125 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DVNSFGN 182 E I ++ E + + G++DF++F + +R I + + Sbjct: 126 FESNYITGIKNDINIEQFQKIMEIFKGKYDFSSFMKKDKAIRNTMREIYNIKCEYEEREK 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + SFL T IR +GS + GK ++ L+ D + LAP EGLY Sbjct: 186 KIYVEICGSSFLKTMIRIMIGSAMAIYFGKEREDYIKMRLENPDADKPKILAPSEGLYLY 245 Query: 243 SVEY 246 V+Y Sbjct: 246 RVDY 249 >gi|238018655|ref|ZP_04599081.1| hypothetical protein VEIDISOL_00490 [Veillonella dispar ATCC 17748] gi|237865126|gb|EEP66416.1| hypothetical protein VEIDISOL_00490 [Veillonella dispar ATCC 17748] Length = 261 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 129/245 (52%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ G+Q+Q + G ++QG +E + + E + ++GA RTD+GVHA QV Sbjct: 6 IIVAYDGTDLAGYQKQPDDKGLTVQGCLEYGLSKICNEPIQIYGASRTDAGVHAKFQVCT 65 Query: 64 FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +PV + +A+ A+ I I +L + + R++ + Y+Y I + Sbjct: 66 FQTSGS-IPVENIPRAMIAH--IPKDIVVLEALEIPLDWKPRWNIYGKEYVYTIHNQLIA 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L K W + K L+ + M+ A L+G HDFTT + + + P++TI V + G+ Sbjct: 123 NPLTKRYHWHVKKPLNIDLMQAAGNELLGTHDFTTLKGTNSTPADPVKTIIGIHVEAEGS 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +GL + Sbjct: 183 HVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQGLCLE 242 Query: 243 SVEYS 247 + ++ Sbjct: 243 EIFFT 247 >gi|257064823|ref|YP_003144495.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476] gi|256792476|gb|ACV23146.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476] Length = 271 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 131/256 (51%), Gaps = 21/256 (8%) Query: 8 IEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y+G+ + G+ RQ ++QG +E A+ ++ V AGRTD+GVHA+ QV F Sbjct: 21 VAYDGAPFAGFARQAECDRVMTVQGELEHALRVLYRRDVRTTCAGRTDAGVHAIGQVVSF 80 Query: 65 DLVREW----VPVILCKALNAYLKISDTISILNLSIVDKQ---FHARFSAIRRSYLYRII 117 D+ + P L ++LNA + D +S+ S+V+++ F ARF A R Y YRI Sbjct: 81 DVTEDEFASRTPRSLLRSLNAL--VDDHMSV---SVVEEKPFGFSARFDAKWREYRYRIS 135 Query: 118 TRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTI 172 T A L W L LD + M AA HL+G HDF +F P + + Sbjct: 136 TAAARPVLIMPLVWHLGGVDLDIDAMNRAAVHLIGEHDFKSFCVAASAVGKPTCRNVMEL 195 Query: 173 DHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + F+ G + +RVV +FLH+ +R+ VG+L VG G+ + L+A++R G Sbjct: 196 EVFEEEILGQQVATVRVVGNAFLHSMVRTIVGTLVEVGRGRRNPEWVCDVLEARNRGAAG 255 Query: 232 PLAPPEGLYFDSVEYS 247 AP +GL F VEY Sbjct: 256 QNAPAQGLVFWHVEYE 271 >gi|260592560|ref|ZP_05858018.1| tRNA pseudouridine synthase A [Prevotella veroralis F0319] gi|260535606|gb|EEX18223.1| tRNA pseudouridine synthase A [Prevotella veroralis F0319] Length = 253 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 122/265 (46%), Gaps = 31/265 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ + E V + G GRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSTLLREEVSITGGGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAHFD + I C+ L L + +S+ + V + HARFSA R+Y Y + T Sbjct: 61 VAHFDTDK----TIACQQLVYKLNRLLPRDVSVSQIVPVSEDLHARFSATSRTYHYYVHT 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-----------------RSI 161 + P + + P LD + M AA +L+G DF F R I Sbjct: 117 TKQPFSRQYSCEIHYP--LDFDKMNEAADYLIGEKDFKCFCKTGADVKTTICNLTEARWI 174 Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 C+A + T D F + A FL +RS VG+L VG G+ + + + Sbjct: 175 PCKAEQALVTSDRITNWCF------VISANRFLRNMVRSVVGTLVDVGRGRLSLEEFQAI 228 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 + R + G P L+ ++Y Sbjct: 229 VNNGSRSDAGESMPGNALFLWDIKY 253 >gi|50955536|ref|YP_062824.1| tRNA pseudouridine synthase A [Leifsonia xyli subsp. xyli str. CTCB07] gi|62901288|sp|Q6AD25|TRUA_LEIXX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50952018|gb|AAT89719.1| tRNA pseudouridine synthase A [Leifsonia xyli subsp. xyli str. CTCB07] Length = 288 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 132/268 (49%), Gaps = 29/268 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA---IFLVTGEIVVVHGAGRTDSGVHALR 59 R+ + I Y G+ + GW RQ + ++QG++E+A IF +GE + AGRTD+GVHA Sbjct: 7 RFRLDIAYQGTDFAGWARQPDLRTVQGTLEEALATIFRCSGEPPSLTVAGRTDAGVHATG 66 Query: 60 QVAHFDLVREWVPVI---------------LCKALNAYLKISDTISILNLSIVDKQFHAR 104 QVAH DL E V ++ L + +N L + + + F AR Sbjct: 67 QVAHVDLSPEQVALLRRPHGKREPQLAHDALKRRVNGVLGPVPDVLVSRATEAPAGFDAR 126 Query: 105 FSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R Y YR+ R A L++ R +P +LD + M A ++G HDF ++ C Sbjct: 127 FSALWRRYEYRVADRIALRDPLQRHRTAWVPNTLDVDAMDRGAHGMLGLHDFASY----C 182 Query: 164 QA---SSPIRTIDHFD--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 +A ++ IRT+ F ++ G L+ V A +F H+ +R+ VG+ VG+GK DL Sbjct: 183 KAREGATTIRTLQAFSWRRDAEGVLLG-EVAADAFCHSMVRALVGACVEVGEGKLRPGDL 241 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 + R + P GL V Y Sbjct: 242 VTLRDERQRTSAFKVMPARGLTLREVGY 269 >gi|89893262|ref|YP_516749.1| hypothetical protein DSY0516 [Desulfitobacterium hafniense Y51] gi|89332710|dbj|BAE82305.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 271 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 6/246 (2%) Query: 5 CMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 C+ + Y+G+ Y G+QRQ +G +IQG++E + E V ++ AGRTD+GVHA QV Sbjct: 8 CLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLVEEEVTLNTAGRTDTGVHAAGQVV 67 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F +PV + KA N+ L I IL + FHARFSA + Y YRI Sbjct: 68 NFR-TGARIPVDKIPKAFNSLL--PRDIRILAAQEAAENFHARFSAKWKRYDYRIDNHPV 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P LD + M+ AQ+LVGRH+F F + + + RT+ V Sbjct: 125 ADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAENQ 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + FL+ +R G+L VG + ++ L + DRK G A P+GL Sbjct: 185 GHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGLTL 244 Query: 242 DSVEYS 247 V Y Sbjct: 245 SYVHYG 250 >gi|12045035|ref|NP_072845.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|255660331|ref|ZP_05405740.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|1351308|sp|P47428|TRUA_MYCGE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3844778|gb|AAC71401.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|166078658|gb|ABY79276.1| tRNA pseudouridine synthase A [synthetic Mycoplasma genitalium JCVI-1.0] Length = 244 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 120/248 (48%), Gaps = 8/248 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ Y+GS + GW Q N ++IQG +E++ L+ G + V G+GRTD GVHA+ Q Sbjct: 1 MARYLGIVSYDGSYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H D+ E +L + +N +K + L L V+ FHARF + Y Y +I Sbjct: 61 TFHVDINGEINLNLLIRKINQLIKPHCIVKTLVL--VNDSFHARFQVKTKVYEY-LINCG 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 L+ W + + LD E ++ A +G+ +F +F SIH + IRTI + Sbjct: 118 NLNPLQFNYVWQLNQQLDLEKLKADATLFLGKKNFLSFSSSIH---TDSIRTISKITIQK 174 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N L+ + FL +Q+R V L + K + K + + C AP G Sbjct: 175 ETNQLVRLTFFGSGFLRSQVRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCG 234 Query: 239 LYFDSVEY 246 LY +V Y Sbjct: 235 LYLKTVVY 242 >gi|213582886|ref|ZP_03364712.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 214 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 103/200 (51%), Gaps = 4/200 (2%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GRTD+GVH QV HF+ +NA L I++ + V FHARFSA Sbjct: 1 GRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSAT 58 Query: 109 RRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y Y I R P L KG + LD E M AAQ L+G +DFT+FR++ CQ+ + Sbjct: 59 ARRYRYIIYNHRLRPAVLAKGVTHYY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT 117 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 P R + H +V G + + + A +F+H +R+ VGSL VG + + + L A+DR Sbjct: 118 PWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDR 177 Query: 228 KECGPLAPPEGLYFDSVEYS 247 A EGLY +V+Y Sbjct: 178 TLAAATAKAEGLYLVAVDYP 197 >gi|227505250|ref|ZP_03935299.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940] gi|227198149|gb|EEI78197.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940] Length = 285 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/268 (33%), Positives = 133/268 (49%), Gaps = 34/268 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQK ++QG +E + ++ V + AGRTD+GVH+ Q Sbjct: 4 VRLRLDLAYDGTDFHGWARQKGDLRTVQGVLEDNLSMILRHDVELTVAGRTDAGVHSAGQ 63 Query: 61 VAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAHFD+ E + P L + L L + + + + + F ARFSA++R Y Sbjct: 64 VAHFDVPSEALDQRSIDGDPAKLVRRLAKLLP--EDVRVHACTAAPEGFDARFSALQRHY 121 Query: 113 LYRIIT--RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +YRI T R A P W PK +D + M+ AA LVG HDF F C+A Sbjct: 122 VYRITTHPRGALPTRARDTAQW--PKPVDIDAMQEAATTLVGLHDFAAF----CKAKPHA 175 Query: 170 RTIDHFDVNSF----------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 TI D++SF L E RV A +F + +RS VG VG+G D Sbjct: 176 TTI--RDLHSFEWVDVSTPTEPQLYEARVCADAFCWSMVRSLVGCCLRVGEGA-RDVDFA 232 Query: 220 KALQAQDRKECG-PLAPPEGLYFDSVEY 246 A+ A+ ++ PLAP +GL V+Y Sbjct: 233 TAMLAESQRSSQIPLAPAKGLSLVRVDY 260 >gi|257470657|ref|ZP_05634747.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] gi|317064863|ref|ZP_07929348.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] gi|313690539|gb|EFS27374.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] Length = 242 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 121/246 (49%), Gaps = 10/246 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 IRY ++GS ++G+QRQ ++QG IEK + +V E V + AGRTD GVHAL QV Sbjct: 6 IRY----RFDGSMFYGFQRQPGKRTVQGEIEKLLDIVLREKVNMISAGRTDRGVHALEQV 61 Query: 62 AHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 ++F L +PV K ALN L + I I + D F++RF A R+Y Y I + Sbjct: 62 SNF-LTSSPIPVEKLKHALNKGLPLD--IEIFEVEDADIDFNSRFMAKDRAYRYVISWIK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E L+ + +D N + LVG +DF FR C + + IR I Sbjct: 119 NP--FESRYVTLVNEKIDKNNFVKILEPLVGVNDFNNFRLSDCGSKTSIREIYSITAEEK 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + I + SFL +QIR +G+ V G L+ L+ ++ +A P GLY Sbjct: 177 ENKLIINIKGNSFLKSQIRIMMGTALDVYFGNRDENYLKNMLKNPNKDFIKKVADPYGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LSEVNY 242 >gi|163783710|ref|ZP_02178697.1| pseudouridine synthase I [Hydrogenivirga sp. 128-5-R1-1] gi|159881035|gb|EDP74552.1| pseudouridine synthase I [Hydrogenivirga sp. 128-5-R1-1] Length = 239 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 7/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + + G+ Y GWQ Q ++QG++++A+ V GE + V G RTD+GVHA Sbjct: 1 MNNYMLRLAFVGTNYSGWQIQPGVPTVQGTLKEALETVFGEEIRVIGCCRTDAGVHAEDY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ++E L +ALN+ L I + + +VD+ F++R+S ++YLYR+ Sbjct: 61 VANFRSIKELECEKLLRALNSLL--PKDIGVYEVKLVDENFNSRYSVKGKTYLYRLWNSF 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +W + + +D + A + + GRHDF F + ++ I V+ Sbjct: 119 VRNPFLYPFSWSVTRRVDLNLLSEALEIVSGRHDFRGFAKLEEDKTTVIELETKLAVS-- 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LIE+R A FL +R VG++ +GK ++ +L + L+ K C AP +GL Sbjct: 177 GDLIELRFTASHFLRYMVRRLVGAIVKRAEGKVSTGELYEYLKG---KHCPHTAPAKGLT 233 Query: 241 FDSV 244 + V Sbjct: 234 LERV 237 >gi|72382942|ref|YP_292297.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL2A] gi|72002792|gb|AAZ58594.1| tRNA pseudouridine synthase [Prochlorococcus marinus str. NATL2A] Length = 276 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 121/251 (48%), Gaps = 14/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y+GSG+ GWQ QK+ ++QG++E+ I L V AGRTDSGVHA QV Sbjct: 4 RIALVIQYDGSGFRGWQNQKDSITVQGTLEEKIAELDPIRPVKAIAAGRTDSGVHASGQV 63 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD + +W ALN L S I +L V K +HA +SA R Y Y I Sbjct: 64 VHFDCSGPIPIHKW-----ASALNGRLPAS--IKVLEAVGVPKVWHACYSAKYRRYRYSI 116 Query: 117 ITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P + +W + LD M+ A L+G HDF F+ S+ + T+ Sbjct: 117 FNGSYPNLFLQNISWHKYRFMLDINLMKHALNDLLGLHDFAAFQKAGSNRSNSLTTVQDV 176 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +G+++ + + A FL+ +R +G L VG+ + + + R E AP Sbjct: 177 SISRYGDIVTVEIQASGFLYGMVRLLMGQLVAVGEKRLSLEKFRYRWRKGLRSEVKEAAP 236 Query: 236 PEGLYFDSVEY 246 GL V Y Sbjct: 237 AHGLCLIRVGY 247 >gi|34762680|ref|ZP_00143671.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887637|gb|EAA24715.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 245 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 13/242 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF----D 65 Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA QV++F + Sbjct: 12 YDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQVSNFYTSSN 71 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E +L +AL + I IL++ VD+ F+AR +A R Y+Y I + P Sbjct: 72 IPIEKYKYLLTRAL------PNDIDILSVEEVDENFNARHNAKMREYVYIISWEKNP--F 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLI 184 E + + + + + VG HDF FR C + IR I +V FG N I Sbjct: 124 EARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVKYFGENKI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + +FL +Q+R VG+ + G+ + L ++ L EGLY + + Sbjct: 184 KIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLNDFTKEYKKNLVEAEGLYLNKI 243 Query: 245 EY 246 Y Sbjct: 244 SY 245 >gi|262066902|ref|ZP_06026514.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum ATCC 33693] gi|291379371|gb|EFE86889.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum ATCC 33693] Length = 248 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 120/244 (49%), Gaps = 15/244 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV++F Sbjct: 14 YDGSRYYGFQRQPNKITVQGEIEKILKIVTKEDINLISAGRTDRGVHANHQVSNF-YTSS 72 Query: 70 WVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +PV +L +AL I IL++ V++ F+AR A R Y+Y I + P Sbjct: 73 SIPVGKYKYLLTRAL------PKDIDILSVEEVNEDFNARHDAKMREYVYIISWDKNP-- 124 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NL 183 E + +D E + +G HDF FR C + +R I DV F N Sbjct: 125 FETRYCKFVKDKIDAEKLERIFSSFLGVHDFKNFRLSDCVSKVTVREIYSIDVKYFSENK 184 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 ++I + +FL +Q+R VG+ V + +E L ++ L EGLY + Sbjct: 185 LKIFIRGSAFLKSQVRIMVGTALEVYYKNLSENHIELMLNNFSKEYKKYLVEAEGLYLNK 244 Query: 244 VEYS 247 + YS Sbjct: 245 INYS 248 >gi|116334238|ref|YP_795765.1| pseudouridylate synthase [Lactobacillus brevis ATCC 367] gi|122269080|sp|Q03PY8|TRUA_LACBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116099585|gb|ABJ64734.1| Pseudouridylate synthase [Lactobacillus brevis ATCC 367] Length = 265 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 15/256 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHA 57 M RY + + Y+G+ + G+QRQ N +++ ++ + + + +V++G+GRTD+GVHA Sbjct: 1 MQRYKVTLMYDGTNFAGFQRQPNKRTVESTLTDVVNKMAKQPDPAIVIYGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + K LN+ L + + +L + V FHAR+ + Y YR+ Sbjct: 61 LAQVVHFDFPFLIPADNMRKGLNSMLPMD--MEVLKVEEVAPTFHARYDVSGKQYQYRMD 118 Query: 118 TRQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID-- 173 + P W P +D + +A LVG HD+T+F + Q + +RTI Sbjct: 119 MGEFRNPFKRNYTGHWKFP--VDLAKINVALADLVGEHDYTSFVASGAQTRTFVRTIYEA 176 Query: 174 --HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 H D + + E F++ Q+R VG L +G G D+ + + +DRK+ Sbjct: 177 TCHIDEANHELVFEF--YGNGFMYNQVRIMVGVLVEIGSGTRPVHDVLRLYEVKDRKQAR 234 Query: 232 PLAPPEGLYFDSVEYS 247 P GLY V Y Sbjct: 235 RTVPAAGLYLKHVYYQ 250 >gi|115730971|ref|XP_781664.2| PREDICTED: similar to MGC80334 protein [Strongylocentrotus purpuratus] gi|115939533|ref|XP_001190679.1| PREDICTED: similar to MGC80334 protein [Strongylocentrotus purpuratus] Length = 306 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 139/283 (49%), Gaps = 38/283 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSS-------IQGSIEKAIFLVTGEIVV-VHGAGRTD 52 M R+ + +Y G+ Y G R + S+ +Q IE A+ + I V +H + RTD Sbjct: 1 MGRFLIYFQYIGTRYRGVVRATSLSASGEKFVGVQDVIEGALDELKPVIPVKLHVSSRTD 60 Query: 53 SGVHALRQVAHFDLV---------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 +GVHAL AHFD++ R+ + + A+N L+ D I I+ V FH+ Sbjct: 61 TGVHALCNTAHFDMIFKSKRTGEPRDILAESITAAVNKKLEDHD-IRIIKTLRVQDSFHS 119 Query: 104 RFSAIRRSYLYRIIT--RQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR- 159 + A+ R+YLYR+ RQ L + EK R+W + LD +M+ A+ VG HDFT FR Sbjct: 120 QHLAMGRTYLYRLAMGCRQIELPVFEKNRSWAFDQRLDIPSMKEASGRFVGTHDFTAFRN 179 Query: 160 -SIHCQASSPIRTIDHFDV-----------NSFGNL--IEIRVVARSFLHTQIRSFVGSL 205 S+ SPI+TID + N L +E+ +RSFL+ QIR G+L Sbjct: 180 SSMDDDKKSPIKTIDMIEFRRTRGFLYHHCNKMAQLEFLELTFHSRSFLYKQIRRMTGAL 239 Query: 206 KLVGDGKWTSTDLEKALQAQDRKEC--GPLAPPEGLYFDSVEY 246 VG G+ + + L+++D +AP GLY + Y Sbjct: 240 VAVGLGRIAPSHITTILESRDNSHMHRTTMAPAHGLYLKEISY 282 >gi|219666536|ref|YP_002456971.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2] gi|219536796|gb|ACL18535.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2] Length = 271 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 6/246 (2%) Query: 5 CMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 C+ + Y+G+ Y G+QRQ +G +IQG++E + E V ++ AGRTD+GVHA QV Sbjct: 8 CLKVAYDGTYYHGFQRQPEFHGPTIQGTLETVWAKLVEEQVTLNTAGRTDTGVHAAGQVV 67 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F +PV + KA N+ L I IL + FHARFSA + Y YRI Sbjct: 68 NF-RTGARIPVDKIPKAFNSLL--PRDIRILAAQEAAEDFHARFSAKWKRYDYRIDNHPV 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P LD + M+ AQ+LVGRH+F F + + + RT+ V Sbjct: 125 ADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAENQ 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + FL+ +R G+L VG + ++ L + DRK G A P+GL Sbjct: 185 GHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGLTL 244 Query: 242 DSVEYS 247 V Y Sbjct: 245 SYVHYG 250 >gi|294784150|ref|ZP_06749451.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_27] gi|294488220|gb|EFG35565.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_27] Length = 245 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 13/242 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF----D 65 Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA QV++F + Sbjct: 12 YDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAYHQVSNFYTSSN 71 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E +L +AL + I IL++ VD+ F+AR +A R Y+Y I + P Sbjct: 72 IPIEKYKYLLTRAL------PNDIDILSVEEVDENFNARHNAKIREYIYIISWEKNP--F 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLI 184 E + + + + + VG HDF FR C + IR I +V FG N I Sbjct: 124 EARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVKYFGENKI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I + +FL +Q+R VG+ + G+ + L ++ L EGLY + + Sbjct: 184 KIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAEGLYLNKI 243 Query: 245 EY 246 Y Sbjct: 244 SY 245 >gi|217967401|ref|YP_002352907.1| tRNA pseudouridine synthase A [Dictyoglomus turgidum DSM 6724] gi|226708649|sp|B8E1G5|TRUA_DICTD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217336500|gb|ACK42293.1| tRNA pseudouridine synthase A [Dictyoglomus turgidum DSM 6724] Length = 245 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + I Y G ++G+Q+Q +IQG +EK + + E + V GAGRTD+GVHAL Q Sbjct: 1 MTNWKLEISYIGKDFYGFQKQPGKRTIQGELEKVLSFLFDEEIRVIGAGRTDTGVHALGQ 60 Query: 61 VAHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F + + L K LN L + I I + IVD FHAR+SA RR Y+Y + Sbjct: 61 VVNFKSRGHKGFSCDKLHKVLNRLL--PEDIKIKKVEIVDDSFHARYSAKRRWYIYVVYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 K +W I + ++ E + +A G HDF F + + I + F Sbjct: 119 NDERDLFLKDYSWWISREINRELLIFSANLFKGVHDFKNFCVTEDEDQTVIEVYESFWYF 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ + A FL +R VGS+ + G+ + +LE L+ + ++ APP G Sbjct: 179 K-KDLLIYFISAPFFLRKMVRFIVGSMVEIALGRKSLIELEDYLKEERKERFSVPAPPWG 237 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 238 LYLFRVDY 245 >gi|258646098|ref|ZP_05733567.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] gi|260403476|gb|EEW97023.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] Length = 265 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 110/234 (47%), Gaps = 2/234 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G+ Y G+QRQ+N ++Q +E A+ +TG ++ A RTD+GVHA Q F Sbjct: 6 ITLAYEGTAYSGFQRQENSITVQEILETALQKLTGTKTTLYFAARTDAGVHAYGQECTFY 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ALN L I + V F R + ++Y Y + + Sbjct: 66 TESSIPGDRFIFALNILL--PPDIRVTESREVPYDFSVRRNNYGKTYGYLLTEEKDCPPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 K W + LD M AA+ L G HDFT+FR + +SP+RTI + + Sbjct: 124 FKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSFRGNNSVPASPVRTIHDIRIIKKHHFFH 183 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I V FL+ +R+ G+L G GK T DL + L+A+DRK G AP GL Sbjct: 184 IFVTGEGFLYHMVRNIAGALADAGTGKLTPKDLREILEAKDRKFLGATAPAHGL 237 >gi|150025482|ref|YP_001296308.1| tRNA pseudouridine synthase A [Flavobacterium psychrophilum JIP02/86] gi|149772023|emb|CAL43499.1| tRNA-pseudouridine synthase I [Flavobacterium psychrophilum JIP02/86] Length = 250 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 18/252 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG+ Y GWQ Q N +S+Q ++ K + E + + GAGRTD+GVHA + Sbjct: 1 MRYFIEFAYNGTQYHGWQYQPNATSVQETLNKVFSTLLQEKIDIMGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N++L I I N+ V Q HARF A R+Y Y I T + Sbjct: 61 GHFDTDISIDNAKFIHKANSFL--PKDIVIFNIIPVHNQAHARFDATSRTYNYHISTYKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-------RSIHCQASSPIRTIDH 174 AW K +D M AA+ L+ DF F + +C+ + +I+ Sbjct: 119 --VFTNNLAWYSSKKIDVIAMNEAAKVLLKFTDFKCFSKTNTDVNTYNCKITEAFWSIEK 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 LI + A FL +R+ VG+L +G K T + + +++Q+R+ G Sbjct: 177 ------EQLI-FTITADRFLRNMVRAIVGTLINIGLHKITIENFIQIIESQNRENAGFSV 229 Query: 235 PPEGLYFDSVEY 246 P GL+ ++EY Sbjct: 230 PAHGLFLTNIEY 241 >gi|218132910|ref|ZP_03461714.1| hypothetical protein BACPEC_00771 [Bacteroides pectinophilus ATCC 43243] gi|217991783|gb|EEC57787.1| hypothetical protein BACPEC_00771 [Bacteroides pectinophilus ATCC 43243] Length = 256 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 123/259 (47%), Gaps = 16/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+GS Y GWQR ++I+ + AI TGE + G+GRTD+GVHAL Sbjct: 1 MNNYRLTIQYDGSRYNGWQRLNDTDNTIEQILTDAIIKSTGEKTKLIGSGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A+F + + + LN+ L + I + V FH+R SA + Y+YRI Sbjct: 61 QTANFRCRQRLDEMHFTEELNSML--PEDIRVNLTKRVPPDFHSRHSATGKYYVYRIEIS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + +W D + M AAQ ++G HDF F + ++T+ +D+N Sbjct: 119 EPANPFRRRYSWKPDGIPDVKLMCEAAQRMIGEHDFKAFCTDAKLMPYTVKTV--YDINI 176 Query: 180 FGN-----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + +IE+ FL+ +R G++ G G+++ D++ L R Sbjct: 177 HKDYSCLWNREEPGIIELEFHGSGFLYNMVRIMAGTIVDAGLGRFSPADIDAMLNGGTRS 236 Query: 229 ECGPLAPPEGLYFDSVEYS 247 G LAP GL+ EYS Sbjct: 237 MSGQLAPARGLFLKKAEYS 255 >gi|327288532|ref|XP_003228980.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Anolis carolinensis] Length = 293 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 139/277 (50%), Gaps = 37/277 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSS---IQGSIEKAI----FLVTGEIVVVHGAGRTDSGV 55 RY + +Y+G+ Y G + +Q +EKA LV + V+ + RTD+GV Sbjct: 7 RYLISFQYSGTMYSGVMETPPHQATLGVQNYLEKAAEKLRPLVPVKFVI---SSRTDTGV 63 Query: 56 HALRQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HAL AH D+ R + +L +ALN LK + I +L V FHARFSA+ R Sbjct: 64 HALCNTAHIDIERSGGKPPFSESVLVQALNRNLK-HEPIRVLAARRVSDTFHARFSALSR 122 Query: 111 SYLYRIITR-QAPLAL---EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQ- 164 +Y+YR++T P L E+ W+ + LD M+ AA LVG HDF+TFRS + Sbjct: 123 TYVYRVVTGCSCPSDLPVFERNLCWVTQRGHLDLTAMQEAAGLLVGTHDFSTFRSASSEL 182 Query: 165 -ASSPIRTIDHFDVN-SFGNLI-----------EIRVVARSFLHTQIRSFVGSLKLVGDG 211 A +P++TID ++ S G L+ E+ +RSFL+ Q+R G L VG Sbjct: 183 PAKNPVKTIDQLEIRPSSGFLMHHVKSSDLKFWELEFTSRSFLYKQVRRMAGVLVAVGQH 242 Query: 212 KWTSTDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 + ++ L +D P +AP GL+ +VEY Sbjct: 243 RLDPECVKTLLDIRDLMAYPPSTIAPACGLFLKNVEY 279 >gi|256544630|ref|ZP_05472002.1| tRNA pseudouridine synthase A [Anaerococcus vaginalis ATCC 51170] gi|256399519|gb|EEU13124.1| tRNA pseudouridine synthase A [Anaerococcus vaginalis ATCC 51170] Length = 252 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 120/245 (48%), Gaps = 11/245 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I+Y+GS + G+Q QKN ++Q +E AI VTGE + +GRTDSGVHA +F Sbjct: 10 IQYDGSLFEGFQIQKNKRTVQKELEDAIRKVTGEENRIIASGRTDSGVHANEMYINFLTA 69 Query: 68 REWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + +I + +LK + D I L VDK FHARFS ++Y Y I + + Sbjct: 70 K----IIRADKFHFHLKKYLPDDILALESKKVDKNFHARFSVKTKTYKYVISLDKILHPI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTID--HFDVNSFGN 182 + I LD + ++ + L G HDF F S + IR ID +F +N N Sbjct: 126 YRNYMEQITYKLDFDKLKQGMEILKGEHDFKAFMLSEKNDIINTIRKIDDCYFVLNE--N 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + A SFLH Q+R GSL + GK + D + + + P GLY D Sbjct: 184 RLYLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKYYFNKNNTRRANPTLKAGGLYLD 243 Query: 243 SVEYS 247 S++YS Sbjct: 244 SIDYS 248 >gi|210615874|ref|ZP_03290836.1| hypothetical protein CLONEX_03055 [Clostridium nexile DSM 1787] gi|210150077|gb|EEA81086.1| hypothetical protein CLONEX_03055 [Clostridium nexile DSM 1787] Length = 247 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 118/244 (48%), Gaps = 6/244 (2%) Query: 6 MIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + IEY+GS Y GWQR ++ ++I I + I +T E + + RT+ GVHA Q A Sbjct: 6 LTIEYDGSRYQGWQRLGKDESTNTIANKITEVIKKMTNEDIELFCGSRTEVGVHAYGQAA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + + + LN YL + I+I ++ ++FHA +A + Y+YRI + P Sbjct: 66 SFKTTTDMTLIEIQHYLNRYLPMD--IAITDIEEKPERFHASLNATSKIYMYRISVSEVP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E+ + K D + M+ AA LVG+HDF F ++ S+ ++ I DV G Sbjct: 124 SVFERKYVYHSFKRPDVDLMKQAAILLVGKHDFKKFSTVKKNKST-VKEIYDIDVYDDGE 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++I + FLH R +G+L +G G D+E + A P+GLY Sbjct: 183 ELQITLHGNDFLHNMARMILGTLLDIGVGNRKKEDIELIFDSNSDVAASAPADPKGLYLQ 242 Query: 243 SVEY 246 V Y Sbjct: 243 EVLY 246 >gi|307128564|ref|YP_003880594.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri CARI] gi|306483026|gb|ADM89896.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri CARI] Length = 252 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 14/252 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQ 60 +R+ + I Y+G+ ++GWQ Q S+Q +IEK + FL+ I ++ GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGALFYGWQIQNKNISVQETIEKCLSFLLKKNIKII-GAGRTDAGVHAIQM 59 Query: 61 VAHFDLVREWVPV--ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD + + + + LN +L ++ I I N+ V + HARF+ + R Y YRI Sbjct: 60 FAHFDFNQNLLLIDKNIKFKLNYFLPLN--IKIKNIFSVKNKIHARFNVLSRVYEYRIFL 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT-IDHFDV 177 + P L+ WL K + + + A+ L D+++F C+ S +T I H Sbjct: 118 EKNPFYLDTSWQWLYKKKIKIKILNKGAKLLKKYKDYSSF----CKKKSNNKTYICHIFY 173 Query: 178 NSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + + A FL +RS VG+L +G K T D + ++A++R G A Sbjct: 174 AKWILKKKKLFFYIEANRFLRNMVRSIVGTLIELGIKKITLKDFIQIIEAKNRHLAGISA 233 Query: 235 PPEGLYFDSVEY 246 P +GL+ + Y Sbjct: 234 PAKGLFLIKINY 245 >gi|296130457|ref|YP_003637707.1| tRNA pseudouridine synthase A [Cellulomonas flavigena DSM 20109] gi|296022272|gb|ADG75508.1| tRNA pseudouridine synthase A [Cellulomonas flavigena DSM 20109] Length = 306 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 135/271 (49%), Gaps = 32/271 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVV-VHGAGRTDSGV 55 +R + + Y+G G+ GW RQ ++QG +E A+ V GE V AGRTD+GV Sbjct: 12 VRLRLDLAYDGGGFAGWARQPGLRTVQGELEDALATVLRSGPRGEPRPRVTVAGRTDAGV 71 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDT--ISILNLSIV-------DKQFHARFS 106 HA QVAH D+V + + ++ A + + T IL +V + F ARFS Sbjct: 72 HARGQVAHVDVVPDALAAARGRSDRAAVDVLGTRLAGILPPDVVVHAVRHAPEGFDARFS 131 Query: 107 AIRRSYLYRIITRQA---PLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSI 161 A+RR Y YR+ + PL R W++ ++LD M AA+ LVGRHDF + Sbjct: 132 ALRRRYAYRVCDSEGTRDPLR----RGWVLWHRRALDVAAMDAAARSLVGRHDFAAYCKP 187 Query: 162 HCQASSPIRTIDHF------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 A++ IRT++ F D G L+ V A +F H+ +R+ VG+ VG+G+ Sbjct: 188 RPDATT-IRTLEEFTWTRPVDGPDAG-LVVAHVQADAFCHSMVRALVGASLAVGEGRRPV 245 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 T L A+ R+ + P+GL + V Y Sbjct: 246 TWPRDLLDARTRQGGATVVAPQGLTLEDVGY 276 >gi|314935862|ref|ZP_07843214.1| tRNA pseudouridine synthase A [Staphylococcus hominis subsp. hominis C80] gi|313656427|gb|EFS20167.1| tRNA pseudouridine synthase A [Staphylococcus hominis subsp. hominis C80] Length = 267 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G G+ G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNIAYQGHGFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L + I + ++ VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIEPKQWIYAMNSAL--PEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I LD + M AA+H +G HDFT F S + S RT+ +V Sbjct: 119 RNPFESGLKTFIKDDLDLDKMNEAAKHFIGTHDFTGFCSQKTEVESKERTLYQSEVVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+A++R AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLVEVGKGKRQPNEVPELLKAKNRDNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|281420165|ref|ZP_06251164.1| tRNA pseudouridine synthase A [Prevotella copri DSM 18205] gi|281405965|gb|EFB36645.1| tRNA pseudouridine synthase A [Prevotella copri DSM 18205] Length = 247 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 121/252 (48%), Gaps = 14/252 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G+ Y GWQ Q N +S+Q +++A+ ++ + + V GAGRTD+GVHA Sbjct: 1 MRYFIFFGYDGTNYHGWQIQPNANSVQQELQRALSILLRKEMEVVGAGRTDTGVHARHMA 60 Query: 62 AHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD R P L LN L I++ + V + HARFSAI R+Y Y I T++ Sbjct: 61 AHFDTDRIPMEPDQLVYRLNRILPRD--IAVYEVMEVAPEMHARFSAISRTYHYYIHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-TIDHFD--- 176 P E+ + + L+ E M AAQH + D+ F C+A + TI H Sbjct: 119 DP--FERHYSLQMNYPLNFEKMNEAAQHFLHHEDYAAF----CKAGGDNKTTICHVTAAR 172 Query: 177 -VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + A FL +R+ VG+L VG K T L R + G P Sbjct: 173 WIQTSPTTWYFEITANRFLRNMVRAVVGTLIDVGREKITMEQFLDILHNGSRSDAGESMP 232 Query: 236 PEGLYFDSVEYS 247 L+ + V Y Sbjct: 233 GNALFLEDVGYD 244 >gi|292557750|gb|ADE30751.1| tRNA pseudouridine synthase [Streptococcus suis GZ1] Length = 222 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 5/216 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + L +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + + FL+ Q+R+ VG+L +G+G+ Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRM 214 >gi|225013075|ref|ZP_03703490.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-2A] gi|225002803|gb|EEG40784.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-2A] Length = 248 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 7/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQRQ N S+Q +E A+ + E + + +GRTD+GVHA + Sbjct: 1 MRYFLEFSYAGTNYHGWQRQPNAVSVQEVLEHALSTLLKETISLLASGRTDTGVHARQMF 60 Query: 62 AHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD L E ++ + LN +L I + +L V + HARF A+ RSY Y I Sbjct: 61 AHFDGKLSLETFQQLVYQ-LNQFL--PQDIVVHSLREVKAEAHARFDALSRSYEYHIALG 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + I + LD E M AA L+ DF F + + I + + Sbjct: 118 KTPFG--NSMHYRINQDLDLEAMNEAAAILLEYEDFECFSKSRTDVKTFLCDISYAQWSK 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N + A FL +R+ VG+L +G K DL ++++ R + G P +GL Sbjct: 176 TKNGYIFTITANRFLRNMVRAIVGTLIEIGLKKKEIEDLRGIIKSKSRSKAGFSVPAQGL 235 Query: 240 YFDSVEY 246 + +EY Sbjct: 236 FLTRIEY 242 >gi|254282596|ref|ZP_04957564.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR51-B] gi|219678799|gb|EED35148.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR51-B] Length = 222 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 104/205 (50%), Gaps = 14/205 (6%) Query: 48 AGRTDSGVHALRQVAHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 AGRTD+GVH Q+ HFD + WV + + T+ + V+ FH Sbjct: 6 AGRTDTGVHGFAQIVHFDDPVGRSEKAWV-------MGTNSALPSTVRVHWAHPVEDDFH 58 Query: 103 ARFSAIRRSYLYRII-TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFSA R+Y Y I TR P L W + ++LD + M AAQ LVG HDF+ FR+ Sbjct: 59 ARFSAELRTYRYVIANTRVHPAQLAGLVTW-VRRALDADVMNKAAQALVGEHDFSAFRAA 117 Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 C A++P+R ++ + G+L+ I + A +FLH +R+ GSL +VG G T+ Sbjct: 118 SCGANTPMRRVEQISITRRGDLVVIEIAANAFLHHMVRNIAGSLIMVGSGLRTADWFRDI 177 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 + +DR A GLY V Y Sbjct: 178 FRGRDRTVAADTAAAAGLYLIHVSY 202 >gi|94987504|ref|YP_595437.1| tRNA pseudouridine synthase A [Lawsonia intracellularis PHE/MN1-00] gi|123082124|sp|Q1MPG1|TRUA_LAWIP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|94731753|emb|CAJ55116.1| Pseudouridylate synthase [Lawsonia intracellularis PHE/MN1-00] Length = 257 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 127/266 (47%), Gaps = 28/266 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + Y G+ Y GWQ Q+ S +IQ ++EK I + G+ V V GAGRTD+GV Sbjct: 1 MPRLKFTLAYVGTAYHGWQTQRRKSLPELPTIQSTLEKVIASIIGKPVRVCGAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + + LNA L I +++ V+ FHA+ A+++ Y YR Sbjct: 61 HAEGQVAHVDIPESKLKLDWQLVLNASL--PKNIRVVHSLYVEDTFHAQHDAVQKLYAYR 118 Query: 116 IITRQA-------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 + P GR LD E M A+ L+G H+F + ++ + S Sbjct: 119 LWLNHRYTPPVLYPFVWSCGR-------LDLEAMDKASTFLLGTHNFVSLQNRGTKLLST 171 Query: 169 IRTIDHF--DVNSFGNLIEIRVV-----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 +RTI + + F +L E V A FL +R+ +G L LVG K + Sbjct: 172 VRTISALYREPSQFFSLNESHEVTWFFKADGFLKQMVRNIMGLLVLVGRRKIQPEKIPYI 231 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 L+A+DR+ P AP GL V YS Sbjct: 232 LEAKDRRHSAPTAPAHGLTLKKVFYS 257 >gi|331702049|ref|YP_004399008.1| tRNA pseudouridine synthase A [Lactobacillus buchneri NRRL B-30929] gi|329129392|gb|AEB73945.1| tRNA pseudouridine synthase A [Lactobacillus buchneri NRRL B-30929] Length = 267 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 123/255 (48%), Gaps = 15/255 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 IRY + + Y+G+ + G++RQ +I+G + + + ++ +VV+G+GRTD+GVHAL Sbjct: 4 IRYKVTLAYDGTLFSGFERQPKRRTIEGVLTQKVNIMAKNPDPPIVVYGSGRTDAGVHAL 63 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + + + LN+ L + + I V FHAR+ + Y+YR+ Sbjct: 64 GQVVHFDFPFDLPTKAIYRGLNSLLPLD--MEIKKAEKVSNTFHARYDVSGKRYVYRLDL 121 Query: 119 RQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + P W P +D E ++ A VG HDF++F + A S +RTI ++ Sbjct: 122 GEFKDPFKRNYTGNWRFP--IDIERVQTAMNDFVGEHDFSSFVASGSTARSNVRTI--YE 177 Query: 177 VNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 N+ N I + FL+ +R VG + +G D+ + + +DR + Sbjct: 178 ANAILDKSANEIRLEFYGNGFLYNMVRIMVGVVVEIGSQMRPEHDILRLYEVKDRDQARR 237 Query: 233 LAPPEGLYFDSVEYS 247 P GLY V Y Sbjct: 238 TMPASGLYLKKVYYE 252 >gi|170077660|ref|YP_001734298.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7002] gi|238689046|sp|B1XJI2|TRUA_SYNP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169885329|gb|ACA99042.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7002] Length = 274 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 115/246 (46%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ ++Q IE+ I V G+ + +HGAGRTDSGVHA Q A Sbjct: 11 RIALVIQYIGTHFCGWQRQTAERTVQAVIEETISTVVGQKITIHGAGRTDSGVHAAGQFA 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ K LN ++ I+I V + +HA+FSA R Y Y I T P Sbjct: 71 HFECESLIPGYKWAKILND--RLPPDINIRGACEVSQDWHAQFSAQWRRYRYTIYTHPTP 128 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW LD ++ A L+G H F+ + S + + + G Sbjct: 129 NLFIQPYAWHYYQAPLDETLIQAALTPLLGEHHLAAFQRTGSKRSHAWVNVQAAECSRRG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A FL+ +R VG L +G GK + + + + R AP +GL Sbjct: 189 SFIHIEIQANGFLYGMVRLLVGMLVDIGQGKLSLAQFQDIWKNEKRHLVKYSAPAKGLCL 248 Query: 242 DSVEYS 247 V Y Sbjct: 249 LRVGYP 254 >gi|57867747|ref|YP_189363.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis RP62A] gi|293368464|ref|ZP_06615088.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W2(grey)] gi|62901168|sp|Q5HM30|TRUA_STAEQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57638405|gb|AAW55193.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis RP62A] gi|291317422|gb|EFE57844.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W2(grey)] gi|329737018|gb|EGG73273.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU045] Length = 267 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVNETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|294794578|ref|ZP_06759714.1| tRNA pseudouridine synthase A [Veillonella sp. 3_1_44] gi|294454908|gb|EFG23281.1| tRNA pseudouridine synthase A [Veillonella sp. 3_1_44] Length = 254 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 6/243 (2%) Query: 8 IEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA QV F Sbjct: 1 MAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAKFQVCTFQ 60 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +PV + +A+ A+ I I +L + + R++ + Y+Y I + Sbjct: 61 -TSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHNQLIADP 117 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L K W + K LD + M+ A L+G HDFTT + + + P++TI V + Sbjct: 118 LTKRYHWHVKKPLDIDRMQAAGNELLGTHDFTTLKGTNSTPADPVKTILGIHVKVKEAHV 177 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I VV FL+ +R+ VG L VG G+ D++ L A+DR+ G AP +GL + + Sbjct: 178 TISVVGDGFLYHMVRNIVGLLVDVGLGRRKVEDIKGYLVAKDRRVIGKTAPAQGLCLEEI 237 Query: 245 EYS 247 ++ Sbjct: 238 FFT 240 >gi|27468710|ref|NP_765347.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis ATCC 12228] gi|32130291|sp|Q8CML6|TRUA_STAES RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27316258|gb|AAO05433.1|AE016750_38 tRNA pseudouridine synthase A [Staphylococcus epidermidis ATCC 12228] gi|329731249|gb|EGG67619.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU144] Length = 267 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVNETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|227872273|ref|ZP_03990632.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] gi|227841885|gb|EEJ52156.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] Length = 249 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 5/247 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALRQ 60 Y +I+ Y+GS YFG+++QK+ ++IQG +E + G E V + GA RTD+GVHA Sbjct: 5 YKLIVAYDGSRYFGFEKQKDQEATIQGKLEGVFSRIPGNEEGVEIIGASRTDAGVHARGM 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+ L E + N YL + I+I+++ V +FHAR++A+ + Y Y + Sbjct: 65 CANVFLDTELSEEEILDYGNRYL--PEDIAIVSVKKVSPRFHARYNALGKIYRYSCYIGR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + + D E M+ AA+ L+G+ DF +F S IR+I + Sbjct: 123 TKPVFDRKILLHLEEEPDLEAMQEAAKFLIGKQDFKSFCGNPKMKKSTIRSISSIRIQKS 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 NL+ FL QIR VG+L VG K + D+ + A+DR++ G P +GL Sbjct: 183 QNLLRFYFEGSGFLQYQIRIMVGTLLEVGYHKRKAGDIPGIIDAKDRQQAGYTVPAKGLC 242 Query: 241 FDSVEYS 247 V Y Sbjct: 243 LMKVLYD 249 >gi|269128483|ref|YP_003301853.1| tRNA pseudouridine synthase A [Thermomonospora curvata DSM 43183] gi|268313441|gb|ACY99815.1| tRNA pseudouridine synthase A [Thermomonospora curvata DSM 43183] Length = 288 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 4/250 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 ++R + I Y+G+ + GW RQ + ++QG IE+A+ L + AGRTD+GVHA Sbjct: 6 LVRLRLDIGYDGTDFSGWARQPDRRTVQGVIEEALGRVLRLDPPPALTVAGRTDAGVHAR 65 Query: 59 RQVAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH D+ + + ++ + + + +++ + F ARFSA+ R Y+YR+ Sbjct: 66 GQVAHVDVPERAYAAVSNRLVHRLAGLLPPDVRVWRIAVAPRGFDARFSALWRRYVYRVC 125 Query: 118 TRQAPLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 R+A + + R L P+ LD + M AA L+G HDF F A++ R + + Sbjct: 126 DREAGVDPLRRREVLWHPRPLDLDRMNEAAARLLGEHDFAAFCRRREGATTIRRLLRYEW 185 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L VVA +F H+ +R+ VG+L VGDG+ + L A R +AP Sbjct: 186 RREEPALAAATVVADAFCHSMVRALVGALLAVGDGRREVDWPARVLAAGVRDSAVNVAPA 245 Query: 237 EGLYFDSVEY 246 GL + + Y Sbjct: 246 HGLSLEEIGY 255 >gi|332712143|ref|ZP_08432071.1| pseudouridylate synthase I [Lyngbya majuscula 3L] gi|332348949|gb|EGJ28561.1| pseudouridylate synthase I [Lyngbya majuscula 3L] Length = 277 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 114/245 (46%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ ++GWQRQ S+Q IE + V + ++GAGRTD+GVHA QVA Sbjct: 11 RIALVIQYLGNNFYGWQRQPQHRSVQSEIETVLSSVQQRAITLYGAGRTDTGVHAAAQVA 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN+ ++ + I + ++V + +HARFSAI R Y Y I T P Sbjct: 71 HFNATGPIPAHRWAAILNS--RLPEDILVRASALVSQDWHARFSAIWRRYRYTIYTDACP 128 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + W LD ++ A + L+G+H F + S + + G Sbjct: 129 NLFVQPFCWHYYQAPLDESLIQAALKPLLGKHHLAAFHRSNSGRSHSWVNVQAAECYRNG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ +R VG L VG GK T Q R + +P +GL Sbjct: 189 PFIHIEIQANGFLYGMVRLLVGMLVQVGIGKLTPEQFTDIWVNQQRDKVKHASPAKGLCL 248 Query: 242 DSVEY 246 V Y Sbjct: 249 LRVGY 253 >gi|310658388|ref|YP_003936109.1| tRNA pseudouridine synthase a [Clostridium sticklandii DSM 519] gi|308825166|emb|CBH21204.1| tRNA pseudouridine synthase A 2 (tRNA-uridine isomerase I 2) (tRNA pseudouridylate synthase I 2) [Clostridium sticklandii] Length = 245 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 3/240 (1%) Query: 8 IEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 ++Y G+ Y GWQR K+ ++IQG +E + +T E V V G RTD GVHA +A+F Sbjct: 8 LQYEGTRYLGWQRLKDQDNTIQGKLEDLLNKMTDEEVQVIGCSRTDKGVHAKSLIANFHT 67 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + +N YL + I + + D +FHAR +A + Y + I Sbjct: 68 NSKMTLHEIQTYMNYYL--PEDIRVTYIEEADDKFHARHNAKTKVYRFTIDNNSFADVFT 125 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + A PK LD + M AA +L+G HD+ F ++ + S ++I + N + + Sbjct: 126 RKTAIHQPKQLDIKAMEKAANYLIGTHDYDAFTTMKSKKKSCRKSIKSIAITKKNNYVYL 185 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 FLH IR G+L VG G+ + +L L ++DR GP+ +GL V Y Sbjct: 186 EFEGEGFLHNMIRIITGTLIRVGTGEISPEELANILASKDRSLSGPMVEGKGLMLMQVNY 245 >gi|228474552|ref|ZP_04059283.1| tRNA pseudouridine synthase A [Staphylococcus hominis SK119] gi|228271215|gb|EEK12583.1| tRNA pseudouridine synthase A [Staphylococcus hominis SK119] Length = 267 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G G+ G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNIAYQGHGFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L + I + ++ VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIEPKQWKYAMNSAL--PEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I LD + M AA+H +G HDFT F S + S RT+ +V Sbjct: 119 RNPFESGLKTFIKDDLDLDKMNEAAKHFIGTHDFTGFCSQKTEVESKERTLYQSEVVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+A++R AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLVEVGKGKRQPNEVPELLKAKNRDNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|32472096|ref|NP_865090.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1] gi|42559754|sp|Q7TU07|TRUA_RHOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|32397468|emb|CAD72774.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1] Length = 276 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 14/256 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + + Y+G+ Y GWQ Q SIQ +E+ I + G V V G+GRTD+GVHA+ QVA Sbjct: 10 FHLTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTDAGVHAIGQVAR 69 Query: 64 FDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 L V + V L +A+N+ K+ + I + + ++FH A + Y Y + + Sbjct: 70 CVLPVWKADTVALQRAINS--KLPNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSR 127 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT------IDHFD 176 + +D M+ AA VGRHDF F+ + S +RT I Sbjct: 128 DPFANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHSARWIPRVA 187 Query: 177 VNSFGNLIE-----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 G +E + FL+ +R+ +G++ VG GK + +++ L ++DRK G Sbjct: 188 TGPTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVLASRDRKMAG 247 Query: 232 PLAPPEGLYFDSVEYS 247 P APP+GL+ V+Y Sbjct: 248 PTAPPQGLFLCRVDYP 263 >gi|256380565|ref|YP_003104225.1| tRNA-pseudouridine synthase I [Actinosynnema mirum DSM 43827] gi|255924868|gb|ACU40379.1| tRNA-pseudouridine synthase I [Actinosynnema mirum DSM 43827] Length = 314 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 129/258 (50%), Gaps = 28/258 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW RQ N ++ G +E + V E VV+ AGRTD+GVHA QV Sbjct: 37 VRVRLDLAYDGTEFSGWARQPNRRTVCGVLEDTMSTVLREDVVLTVAGRTDAGVHAAGQV 96 Query: 62 AHFDLVR----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 AH DL +P L +AL A + + + +V F ARF+A+RR Y YR+ Sbjct: 97 AHVDLPEAADVAGLPKRLARALPA------DVRVFSARVVPAAFDARFAALRRHYEYRVT 150 Query: 118 TRQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 AP R AW P+ LD M A+ ++G DF + + ++ IR + Sbjct: 151 --DAPFGAHPLRRLDTLAW--PRQLDVAAMNAASGLMLGERDFCAY-CRRREGATTIREL 205 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRK 228 + G+L+ V A +F H+ +RS VG+L VG+G+ W ++ L ++ + Sbjct: 206 QRLEWVREGDLLTAFVSADAFCHSMVRSLVGALLAVGEGRKPVEWPASLLSLHSRSSEVT 265 Query: 229 ECGPLAPPEGLYFDSVEY 246 +APP GL V+Y Sbjct: 266 ----VAPPHGLSLVRVDY 279 >gi|168333393|ref|ZP_02691673.1| tRNA pseudouridine synthase A [Epulopiscium sp. 'N.t. morphotype B'] Length = 259 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 123/254 (48%), Gaps = 20/254 (7%) Query: 7 IIEYNGSGYFGWQRQKN----GSSIQ---GSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 I+ Y G+ Y G+ RQ GS IQ +E AI +T + V + GAGRTD+GVHAL Sbjct: 12 IVAYKGTRYNGFARQAGDKVVGSGIQTISAELELAIEKITQQQVRIVGAGRTDAGVHALA 71 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV ++ + L ALN L + I I ++ ++ FH FS R+ Y Y+I+ Sbjct: 72 QVCIANIDTQIGNSGLLLALNNKLPVD--IVIKSIEDAEEGFHPTFSGKRKMYRYQILNT 129 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----RSIHCQASSPIRTIDHF 175 + P LD E M++AA LVG HDF F ++ + SS +RTI F Sbjct: 130 TVSCPFVAEFVYHFPHKLDVEEMKVAAXELVGTHDFRAFCAAKSNVLKKGSSTVRTI--F 187 Query: 176 DV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D+ +I+I V FL+ +R G+ L+ G + K L+ ++RK G Sbjct: 188 DIVVARGDDEIIKIDVTGDGFLYNMVRIIAGT--LIDKGLGRGMPIAKILEMRERKNAGK 245 Query: 233 LAPPEGLYFDSVEY 246 AP GL VEY Sbjct: 246 TAPASGLTMIGVEY 259 >gi|332297806|ref|YP_004439728.1| tRNA pseudouridine synthase A [Treponema brennaborense DSM 12168] gi|332180909|gb|AEE16597.1| tRNA pseudouridine synthase A [Treponema brennaborense DSM 12168] Length = 257 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 120/248 (48%), Gaps = 9/248 (3%) Query: 6 MIIEYNGSGYFGWQRQKNGS------SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + + Y+G+ + GWQRQ + ++Q +E+A+ ++ V + G+GRTDSGVHA Sbjct: 6 LTVSYDGTDFCGWQRQDHADRGEPVRTVQAELERALRIMLKTPVALTGSGRTDSGVHAFA 65 Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q A+F + VP ALN+ L + + V FHARF A R+Y Y + Sbjct: 66 QAANFLSPFDSVPPENYVPALNSSLPPD--VRVTAAREVPPGFHARFDARMRTYRYFLYC 123 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P A E W I + D + A L G D TTF + S R ++ Sbjct: 124 GATPPAHETRYVWPIRRYPDIARLNRMASCLYGEIDCTTFAAAGDPCESKKRYLEKAVFY 183 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + + A +FL +RS VGSL + + L+A+DR+ GP APP+G Sbjct: 184 ADGDKLVFEIAANAFLWKMVRSVVGSLVYYEQKGKDADFFAEILRARDRRSAGPTAPPQG 243 Query: 239 LYFDSVEY 246 L+ +V++ Sbjct: 244 LFLWNVDF 251 >gi|227832275|ref|YP_002833982.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] gi|262183869|ref|ZP_06043290.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] gi|227453291|gb|ACP32044.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] Length = 286 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 95/268 (35%), Positives = 129/268 (48%), Gaps = 34/268 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQK G ++Q ++E+ + +V V + AGRTD+GVHA Q Sbjct: 5 VRLRLDLAYDGTDFHGWARQKGGLRTVQQTVEEKLSMVLRHPVELTVAGRTDAGVHASGQ 64 Query: 61 VAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAHFD R + P L + L L + + + + V F ARFSA+RR Y Sbjct: 65 VAHFDTTRAALSQRSIDGEPHKLVRRLAKLLPVD--VRVHACTEVSPDFDARFSALRRHY 122 Query: 113 LYRIIT--RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +YRI T R A P WL P LD M+ AA LVG +DF F C+A Sbjct: 123 VYRITTHPRGALPTRARDTATWLKPVDLDL--MQAAADRLVGLNDFVAF----CKAKPHA 176 Query: 170 RTIDHF------DVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 TI DV++ L E V A +F + +R VG VG+G S D+E A Sbjct: 177 TTIRELLAFEWKDVSTPAEPQLYEAHVSADAFCWSMVRCLVGCCLRVGEG---SRDVEFA 233 Query: 222 ---LQAQDRKECGPLAPPEGLYFDSVEY 246 L R PLAP GL V+Y Sbjct: 234 GQMLNETSRSSQIPLAPAAGLSLVGVDY 261 >gi|288801196|ref|ZP_06406651.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 299 str. F0039] gi|288331807|gb|EFC70290.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 299 str. F0039] Length = 245 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 124/252 (49%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+++Q ++KA+ L+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYFAYDGTNYHGWQIQPNGNTVQEELQKALSLILRCNINVVGAGRTDTGVHARSM 60 Query: 61 VAHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAHFD+ E V +L LN L I + + V + HARFSA R+Y Y + Sbjct: 61 VAHFDISTEIVFDAELLSGKLNRLL--PPDIVVFAIKPVAEDMHARFSATWRTYHYYVHK 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--- 175 + P + ++ + LD M AA++L+ DF F H A + + + Sbjct: 119 GKDPFV--RNYSYSYYRDLDFTLMNEAARYLLEVEDFEAFCKSHSDAKTTLCNVTKAQWI 176 Query: 176 -DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 D ++ + + + A FL +R+ VG+L VG K T + + + + R G Sbjct: 177 QDDDTHWHFV---IKANRFLRNMVRAVVGTLVEVGQHKITIEEFKNIVDQRKRIGAGESM 233 Query: 235 PPEGLYFDSVEY 246 P L+ + VEY Sbjct: 234 PAHALFLEKVEY 245 >gi|88801321|ref|ZP_01116849.1| tRNA pseudouridine synthase A [Polaribacter irgensii 23-P] gi|88781979|gb|EAR13156.1| tRNA pseudouridine synthase A [Polaribacter irgensii 23-P] Length = 241 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQ Q + S+Q + AI V V V GAGRTD+GVHA++ Sbjct: 1 MRYFIELSYNGTKYHGWQIQPDMVSVQEKLNNAISTVLQSKVEVVGAGRTDTGVHAVQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ + LN+ L + IS+ + V + HARF A RSY YRI + Sbjct: 61 AHFN-TEILIENNFVHKLNSIL--PNDISVDKVLEVLEDKHARFDAKSRSYEYRIWLGRN 117 Query: 122 PLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L+ +W I + D M AA L+ +F TF + + + + Sbjct: 118 PFLLD--FSWQIHSQKPDLSKMNAAAILLLEYENFQTFSKVKTEVHTFNCNVTAAFWRQE 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GNL+ + A FL +R+ VG+L VG GK + + + +++++R G P +GL+ Sbjct: 176 GNLLIFHISANRFLRNMVRAIVGTLVDVGLGKISIAEFRQIIESKNRSNAGLSVPAKGLF 235 Query: 241 FDSVEY 246 ++Y Sbjct: 236 LTQIKY 241 >gi|251812078|ref|ZP_04826551.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis BCM-HMP0060] gi|282875373|ref|ZP_06284246.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis SK135] gi|251804412|gb|EES57069.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis BCM-HMP0060] gi|281296138|gb|EFA88659.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis SK135] gi|329736438|gb|EGG72706.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU028] Length = 267 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 KGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|303328364|ref|ZP_07358802.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3] gi|302861694|gb|EFL84630.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3] Length = 226 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 14/223 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R +++ Y G+GY GWQ Q+ S +IQG +E A+ ++ G V VHG+GRTD+GVHA Sbjct: 1 MRLKLLLAYLGTGYSGWQIQEKPSPPPTIQGELEAALRVLAGAPVRVHGSGRTDAGVHAH 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + ++LNA L I IL FHAR A+R++Y+Y+ Sbjct: 61 GQVAHCDVPDAKAGLRWQRSLNALL--PPEIRILAAEPAAADFHARKDALRKTYVYQFWQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +A + + + LD E MR A HL+G HDF ++ S RT+ +++ Sbjct: 119 ERAFVPPQLAPFFWNCGPLDVEAMRAALPHLLGEHDFAGLQNAGTDMESTTRTVFRAELD 178 Query: 179 ---------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + + V A FL +R+ G L G GK Sbjct: 179 IPPPCEFYPPHAPGLRLTVTANGFLKQMVRNMAGLLAACGQGK 221 >gi|124516114|gb|EAY57622.1| Pseudouridylate synthase [Leptospirillum rubarum] Length = 268 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 119/254 (46%), Gaps = 11/254 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+G G+ GWQ Q G+++Q IE+A +T + V + G+GRTD+GV A Q Sbjct: 1 MPRFAFVVSYDGRGFQGWQSQIRGNAVQDHIEEAFCRLTRQDVRISGSGRTDTGVSAAGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT- 118 V H D+ W P L + LN +L S I IL + V FHAR +R+ Y YR ++ Sbjct: 61 VFHCDIAGPGWTPDSLSRGLNHFL--SPAIRILQAAAVAPDFHARHDVVRKIYRYRWVSL 118 Query: 119 ----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R+ P + P +D ++ A + L G +DFT F R+ID Sbjct: 119 SRKAREVPPTEDPFCGIFFP-PVDWTLLQQATKLLEGANDFTRFTVQKSCPEDARRSIDA 177 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL- 233 + N +++ V R FLH IR +L G K T + L L Sbjct: 178 IQWIAGPNTLDLWVAGRGFLHMMIRYLAMALLETGQQKRTLKSFQDLLLPGSLPPVPALH 237 Query: 234 -APPEGLYFDSVEY 246 APP+GL V Y Sbjct: 238 PAPPQGLSLMRVFY 251 >gi|260891283|ref|ZP_05902546.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] gi|260858959|gb|EEX73459.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] Length = 250 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 8/246 (3%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 MI +Y+GS + G+QRQK ++QG IE+A+F + + + +GRTD GVHA+ QV++F Sbjct: 8 MIYQYDGSKFCGFQRQKKMKTVQGEIERAVFKTFNQEINMISSGRTDKGVHAMEQVSNF- 66 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 ++ E +P+ + + +N LK + +L + K F+ARF A R+YLY + + Sbjct: 67 VIDENIPIEAIKRQINKCLK--GEVKVLEVEEAGKDFNARFDAKSRTYLYIMRNEEDITP 124 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----HFDVNSF 180 E + S+ E + VG++DF++F +P+R I ++D Sbjct: 125 FEANYVTGLRASVSVEKFQEIMNDFVGKYDFSSFMKKDKAYRNPVREIVYIKCYYDEKIG 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + FL T +R +GS V G +++ L+ + + LA EGLY Sbjct: 185 QKQLNVEICGNGFLKTMVRIMIGSALAVYFGNVEEDYIKRRLENPNADDKKILAASEGLY 244 Query: 241 FDSVEY 246 V Y Sbjct: 245 LYKVNY 250 >gi|111023127|ref|YP_706099.1| pseudouridylate synthase [Rhodococcus jostii RHA1] gi|110822657|gb|ABG97941.1| pseudouridylate synthase [Rhodococcus jostii RHA1] Length = 297 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 7/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G+ + GW RQ ++ G IE+ + V + + AGRTD+GVHA QVA Sbjct: 27 RLRLDIAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRTPLQLTVAGRTDAGVHATGQVA 86 Query: 63 HFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-- 119 H D+ + +P + + + + + I ++ + F ARFSA+RR Y YR+ + Sbjct: 87 HVDVPVDALPDDPSRLVRRLARFLPKDVRIKRIAFAPEHFDARFSAMRRHYEYRLTSAVY 146 Query: 120 -QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 PL ++ PK LD E MR A+ L+G HDF F + ++ +R + FD Sbjct: 147 GADPLRARDTVSY--PKVLDLELMRSASATLLGLHDFAAF-CKRREGATTVRDLQRFDWE 203 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G++ V A +F + +RS VG++ VG+G+ +E LQ + R +AP G Sbjct: 204 RDGDVFTAFVSADAFCWSMVRSLVGAVLAVGEGRRDLGWIEGLLQEKSRSSSILVAPAHG 263 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 264 LSLVRVDY 271 >gi|319400595|gb|EFV88820.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis FRI909] Length = 267 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDRNRNNVPLTAPPDGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|42559799|sp|Q83G11|TRUA_TROWT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 267 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 5 RYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVVAARTDAGVHALQQVC 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I +++ Sbjct: 65 HVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRSS 124 Query: 123 -LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSF 180 + + + L MR AA L+G DF F + S +R + F+V Sbjct: 125 WYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPR-RMGSTVRHLRQFEVIRQP 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 184 DGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHALT 243 Query: 241 FDSVEY 246 ++Y Sbjct: 244 LIGIDY 249 >gi|300770580|ref|ZP_07080459.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33861] gi|300763056|gb|EFK59873.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33861] Length = 257 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 10/249 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + I Y G+ Y GWQ Q N S+Q + + + + + GAGRTD+GVHA + Sbjct: 7 RFFLEIAYQGTAYHGWQIQHNAVSVQEKLNDVLKTLLRKDIETIGAGRTDTGVHARQLFV 66 Query: 63 HFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD + E + P +LNA L I++ L VD Q HARF A RSY Y + + Sbjct: 67 HFDAIPEGLLLQPDKFVHSLNALL--PHDIAVYRLLPVDDQAHARFDATSRSYEYHLHFK 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + P + +WL D M A Q+L+GR DF F + Q + I + Sbjct: 125 KDPFLINA--SWLTRDIPDVVKMNEACQYLLGRQDFECFSKSNTQVFTNFCDISRAEWLW 182 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N+ +L+ + A FL +R+ VG+L +G +++ + ++ R + G P Sbjct: 183 NTDDHLV-FHISADRFLRNMVRAIVGTLLEIGLKGKEPVYIQEVIASKSRSKAGTSVPAH 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLTEVVY 250 >gi|28493493|ref|NP_787654.1| tRNA pseudouridine synthase A [Tropheryma whipplei str. Twist] gi|28476535|gb|AAO44623.1| pseudouridylate synthase I [Tropheryma whipplei str. Twist] Length = 315 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 53 RYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVVAARTDAGVHALQQVC 112 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I +++ Sbjct: 113 HVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRSS 172 Query: 123 -LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSF 180 + + + L MR AA L+G DF F + S +R + F+V Sbjct: 173 WYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPR-RMGSTVRHLRQFEVIRQP 231 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 232 DGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHALT 291 Query: 241 FDSVEYS 247 ++Y Sbjct: 292 LIGIDYP 298 >gi|226365626|ref|YP_002783409.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus B4] gi|226244116|dbj|BAH54464.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus B4] Length = 270 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 11/245 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ + GW RQ ++ G IE+ + V + + AGRTD+GVHA QVAH D+ Sbjct: 5 VAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRSPLQLTVAGRTDAGVHATGQVAHVDVP 64 Query: 68 REWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR---QA 121 E + P L + L +L + I +S + F ARFSA+RR Y YR+ + Sbjct: 65 VEALPDEPSRLVRRLARFLP--KDVRIKQISFAPEHFDARFSAMRRHYEYRLTSAVYGAD 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 PL ++ PK LD E MR A+ L+G HDF F + ++ +R + FD G Sbjct: 123 PLRARDTVSY--PKILDLELMRSASATLLGLHDFAAF-CKRREGATTVRDLQRFDWERDG 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ V A +F + +RS VG++ VG+G+ +E L+ R +AP GL Sbjct: 180 DVFTAFVSADAFCWSMVRSLVGAVLAVGEGRRDLDWIEGLLRETSRSSSILVAPAHGLCL 239 Query: 242 DSVEY 246 V+Y Sbjct: 240 VRVDY 244 >gi|255530580|ref|YP_003090952.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] gi|255343564|gb|ACU02890.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] Length = 261 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 122/261 (46%), Gaps = 19/261 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q N +++Q ++ A+ + + V G GRTD+GVHA + Sbjct: 1 MQRYFIELSYDGTPYHGWQIQPNATTVQEYLDSALTVYFRQPVSTLGCGRTDTGVHASQF 60 Query: 61 VAHFDLVRE-------WVPVILC-------KALNAYLKISDTISILNLSIVDKQFHARFS 106 AHFDL E +P C +NA L I++ + V HARF Sbjct: 61 FAHFDLQTEAEQSEATGIPASKCPDPLRSVNGINALLPYQ--IAVKRVFEVANTAHARFD 118 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA- 165 A R+Y Y I + P L R+W LD + M AA L+ DF+ F H Q Sbjct: 119 ATARAYHYHIHFHKNPFKL--NRSWFHKGELDMDAMNRAASILLAHSDFSCFSKSHTQTF 176 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ + + F + + A FL +R+ VG+L +G + + E+ ++++ Sbjct: 177 TNNCKITEAFFEEMEDGALRFTIRADRFLRNMVRAIVGTLIRIGKNELNLAEFEQIIKSK 236 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 +R G P GLY +V Y Sbjct: 237 NRSNAGQSVPACGLYLVNVIY 257 >gi|300857811|ref|YP_003782794.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis FRC41] gi|300685265|gb|ADK28187.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis FRC41] gi|302205546|gb|ADL09888.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis C231] gi|308275782|gb|ADO25681.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis I19] Length = 291 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 131/263 (49%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ ++Q +E ++ L+ + + AGRTD+GVHA Sbjct: 8 VRIRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELILRHPIQLTVAGRTDAGVHAAG 67 Query: 60 QVAHFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L + + + ++ + F ARFSA+RR Sbjct: 68 QVAHFDVPAIALDTRSIDGDPRNLVRRLARLLP--EDVRVHACTLAPEGFDARFSALRRH 125 Query: 112 YLYRIITRQ---APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YR+ T P W PK +D + M+ AA L+G HDF F H + ++ Sbjct: 126 YVYRLTTHPRGALPTRATDTAHW--PKRIDIDAMQAAADVLIGLHDFAAF-CKHREGATT 182 Query: 169 IRTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 IR + F DV++ L E V A +F + +RS VGS ++G+GK ++ L Sbjct: 183 IRDLQEFTWHDVSTSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEGKRPEGFVDSLLT 242 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 R P+AP +GL V+Y Sbjct: 243 ETSRSSQVPVAPAKGLSLVGVDY 265 >gi|28572394|ref|NP_789174.1| tRNA pseudouridine synthase A [Tropheryma whipplei TW08/27] gi|42559794|sp|Q820Z2|TRUA_TROW8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28410525|emb|CAD66911.1| tRNA pseudouridine synthase A [Tropheryma whipplei TW08/27] Length = 267 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 5 RYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVIAARTDAGVHALQQVC 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I +++ Sbjct: 65 HVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRSS 124 Query: 123 -LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSF 180 + + + L MR AA L+G DF F + S +R + F+V Sbjct: 125 WYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPR-RMGSTVRHLRQFEVIRQP 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 184 DGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHALT 243 Query: 241 FDSVEY 246 ++Y Sbjct: 244 LIGIDY 249 >gi|113476553|ref|YP_722614.1| tRNA pseudouridine synthase A [Trichodesmium erythraeum IMS101] gi|110167601|gb|ABG52141.1| tRNA pseudouridine synthase A [Trichodesmium erythraeum IMS101] Length = 272 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 116/246 (47%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ N ++Q IEK I E V +HGAGRTD+GVHA QVA Sbjct: 10 RVALVIQYQGTHFHGWQRQPNQRTVQEEIEKTIASFINEPVTLHGAGRTDAGVHAAAQVA 69 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ LN+ ++++ I I + +D +H+RF+AI R Y Y I T + P Sbjct: 70 HFDVSGPIPAHKWATILNS--RLANDILIRGSARIDYAWHSRFTAIWRRYRYTIYTDKQP 127 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSF 180 W SLD + ++ A L+G H F R+ C+ S + + Sbjct: 128 NLFVMPFVWHYYQASLDPQLIQAALNPLIGHHHLAAFQRAGSCRPHSWV-DVQEVMCERK 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I V A FL+ +R VG L VG + + Q R AP GL Sbjct: 187 GPFIYIEVQASGFLYGMMRLLVGLLIQVGTEELSLESFTDIWVNQRRDIVKHSAPASGLC 246 Query: 241 FDSVEY 246 V Y Sbjct: 247 LLRVGY 252 >gi|65317910|ref|ZP_00390869.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012] Length = 175 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + + + + K L+ ++M+ AA+HLVG HDFT F Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAF 157 >gi|260438877|ref|ZP_05792693.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] gi|292808716|gb|EFF67921.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] Length = 249 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 5/243 (2%) Query: 8 IEYNGSGYFGWQRQKNGS-SIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 I ++G+ YFGW+ Q N +IQG IE + + + ++ V G GRTD+GVHA +A+ Sbjct: 9 IMFDGTRYFGWEHQPNTDLTIQGKIETVLQRMVSSEKVPEVIGCGRTDAGVHAKAMIANA 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L + + +N YL D I +L + ++FH+R+ A+ ++Y Y T Sbjct: 69 FLETDMSTDAIRDYMNRYL--PDDICVLEVKEAAERFHSRYKAVGKTYCYTCYTGPLKPV 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ + I ++ D M AA+ L+G HD+ +F S S +R +D + G I Sbjct: 127 FDRKYVYYIEETPDIGKMEEAAKLLIGIHDYASFCSNPKMKKSTVREVDSIQIIKKGQYI 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL +R G+L VG GK + + + +A+DR G AP GL V Sbjct: 187 RFTYHGTGFLQHMVRILTGTLLEVGFGKRDVSSIPELFEAKDRSLAGFTAPASGLCMMQV 246 Query: 245 EYS 247 +Y+ Sbjct: 247 DYN 249 >gi|255022149|ref|ZP_05294152.1| tRNA pseudouridine synthase A [Acidithiobacillus caldus ATCC 51756] gi|254968413|gb|EET25972.1| tRNA pseudouridine synthase A [Acidithiobacillus caldus ATCC 51756] Length = 206 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 97/185 (52%), Gaps = 2/185 (1%) Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + + +N YL +IS+L V + FHARF+A+ R Y Y I+ R Sbjct: 3 HFDAPVTRPALAWTRGVNRYLP--SSISVLWARPVPRDFHARFAAVGRRYRYCILNRSER 60 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AL GRA +P+ L E M+ AA L+GRHDF+ FR+ CQA PIR + V+ G+ Sbjct: 61 SALYAGRAAWVPRPLAVEPMQEAASLLLGRHDFSAFRAAACQAKHPIRELRQLRVSRQGD 120 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + A +FLH +R+ VG L +G G + L ++ R G AP EGLYF Sbjct: 121 WVFVDAEANAFLHHMVRNLVGVLLGIGWGDRPPHWAAEVLASRKRALAGVTAPAEGLYFV 180 Query: 243 SVEYS 247 + Y Sbjct: 181 AALYP 185 >gi|302330101|gb|ADL20295.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis 1002] Length = 319 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 131/263 (49%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ ++Q +E ++ L+ + + AGRTD+GVHA Sbjct: 36 VRIRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELILRHPIQLTVAGRTDAGVHAAG 95 Query: 60 QVAHFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L + + + ++ + F ARFSA+RR Sbjct: 96 QVAHFDVPAIALDTRSIDGDPRNLVRRLARLLP--EDVRVHACTLAPEGFDARFSALRRH 153 Query: 112 YLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+YR+ T P W PK +D + M+ AA L+G HDF F H + ++ Sbjct: 154 YVYRLTTHPRGALPTRATDTAHW--PKRIDIDAMQAAADVLIGLHDFAAF-CKHREGATT 210 Query: 169 IRTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 IR + F DV++ L E V A +F + +RS VGS ++G+GK ++ L Sbjct: 211 IRDLQEFTWHDVSTSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEGKRPEGFVDSLLT 270 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 R P+AP +GL V+Y Sbjct: 271 ETSRSSQVPVAPAKGLSLVGVDY 293 >gi|305664970|ref|YP_003861257.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] gi|88707800|gb|EAR00040.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] Length = 224 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 4/220 (1%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 +Q +E AI + + V GAGRTD+GVHA AHFD L +NA+L Sbjct: 1 MQEVLENAISKLLRSPISVVGAGRTDAGVHAREMFAHFDFKDSIDSKDLVYRMNAFLPAD 60 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 I++ + +V+ + HARF A R+Y Y I ++ P + RA + +LD + M AA Sbjct: 61 --IAVSQIYLVNGEAHARFDATERTYEYWITQKKNPFYFD--RAHFVKNTLDVKAMNDAA 116 Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 +GR DF F + + + + + + +VA FL +R+ VG+L Sbjct: 117 NLFLGRKDFECFSKSNTDVHTYLCDVRKTIWTEEEDKLVFTIVADRFLRNMVRAVVGTLI 176 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG GK + D+++ L+++DR + G P +GLY +EY Sbjct: 177 DVGTGKTSLADIQRILESKDRTKAGASVPAKGLYLTKIEY 216 >gi|332877177|ref|ZP_08444927.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684920|gb|EGJ57767.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 268 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 117/253 (46%), Gaps = 11/253 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q ++KA+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFLYLAYDGTNYHGWQIQPNGISVQEVLQKALATLLRQPVSITGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPV------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD PV L LN L ISI V HARF A+ R+Y Y Sbjct: 61 VAHFDFEYADDPVRRIDGRWLTDKLNRLLPPD--ISIYKTVPVAADAHARFDALSRTYHY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTID 173 + ++P + + + + LD E M AA L DFT+F ++ ++ R + Sbjct: 119 YLHFGKSPFL--RAYSCRLYRMLDFEKMNEAAAALFDYTDFTSFSKVNTDTKTNNCRIMQ 176 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + A FL +R+ VG+L VG GK T ++ +DR G Sbjct: 177 ARWTELAPGEWRFEIQADRFLRNMVRAIVGTLVEVGRGKLTPEGFRAVIEGKDRCRAGES 236 Query: 234 APPEGLYFDSVEY 246 P L+ V Y Sbjct: 237 MPGNALFLVDVAY 249 >gi|289641136|ref|ZP_06473304.1| tRNA pseudouridine synthase A [Frankia symbiont of Datisca glomerata] gi|289509077|gb|EFD30008.1| tRNA pseudouridine synthase A [Frankia symbiont of Datisca glomerata] Length = 279 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 125/255 (49%), Gaps = 31/255 (12%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVR 68 Y+G+ + GW RQ ++QG +E A+ V V + AGRTD+GVHA QVAH D+ Sbjct: 16 YDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDAGVHARGQVAHVDIPD 75 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + L + LN L + + I L+ F ARFSA+ R Y+YRI AP ++ Sbjct: 76 DVPLGGLARRLNGVLDRA--VRITALAPAPPGFDARFSALSRRYVYRI--GDAPYGVDPL 131 Query: 129 R-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHFDV--- 177 R AW P+ LD E M AA LVG DF F C + ++ +RT+ DV Sbjct: 132 RRHDTLAW--PRPLDAERMADAALALVGERDFAAF----CRRREGATTVRTLLRLDVARV 185 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRKECGP 232 + ++ V A +F H+ +R+ VG+L VG+G+ W + L + + R Sbjct: 186 PDGHDGVVVADVEADAFCHSMVRALVGALLAVGEGRRPHHWPADVLARGV----RDPAVT 241 Query: 233 LAPPEGLYFDSVEYS 247 +A P GL V Y Sbjct: 242 VAAPHGLTLVEVRYP 256 >gi|319442992|ref|ZP_07992148.1| tRNA pseudouridine synthase A [Corynebacterium variabile DSM 44702] Length = 283 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 24/265 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M+R + + Y+G+ + GW RQK ++QG +E+ + LV V + AGRTD+GVH Sbjct: 4 MVRVRLDVAYDGTDFHGWARQKGPQEALRTVQGVLEEKLSLVFRTPVELTVAGRTDAGVH 63 Query: 57 ALRQVAHFDLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 A QVAH D+ P L + L+ L + + S F ARFSA+R Sbjct: 64 ATGQVAHVDVPASAFGQRSLEQPSDLVRRLSRMLPAD--VRLHGASAAAPGFDARFSALR 121 Query: 110 RSYLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R Y+YR+ T A PL + W S+D +++A+ LVG HDF F + + S Sbjct: 122 RHYVYRVTTSMAGPSPLRVRDTAQWR--HSVDLSAVQLASDVLVGLHDFAAF-CKYREGS 178 Query: 167 SPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + +R + F+ + E VVA +F + +RS VG++ VG+G+ Sbjct: 179 TTVRELQSFEWRDISTPTEPETYEASVVADAFCWSMVRSLVGAVLTVGEGRRDEGFASCL 238 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 LQ + R P+AP GL +V+Y Sbjct: 239 LQERSRSSKVPVAPACGLNLVAVDY 263 >gi|238916468|ref|YP_002929985.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238871828|gb|ACR71538.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 245 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 7/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M Y + IEY+G Y GWQR + ++I+ + + I +TGE V ++ RT+ GVHA Sbjct: 1 MYNYRIEIEYDGGRYDGWQRLGKDASTNTIESRLCEIIARMTGETVDMYAGSRTEKGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L Q A+F L +E + + LN YL I++++++ D++FH++ +A + Y YR+ Sbjct: 61 LCQTANFKLEKEVKAIEIKNYLNRYL--PRDIAVMSVTEADERFHSQLNAKSKIYEYRLD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T + A+ D + MR AA + G+HDF F + ++ S +TI V Sbjct: 119 TGNVANVFRRKYAYHTFDKPDFDAMRKAAGYFEGKHDFKAFTTAK-KSKSTEKTIKKISV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G IR+ A FLH R +G + VG+G D+++ L ++ + P A Sbjct: 178 EYEGARAYIRIEADDFLHNMARYIIGMMLDVGNGIKKPEDVKRCLDGENIQMSLP-AESY 236 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 237 GLFLVKVVY 245 >gi|33241136|ref|NP_876078.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|42559767|sp|Q7V9Y7|TRUA_PROMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33238666|gb|AAQ00731.1| Pseudouridylate synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 289 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 116/251 (46%), Gaps = 14/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y GS + GWQRQK G +IQ +E AIF L + + V AGRTD+GVHA QV Sbjct: 17 RIALSIQYQGSNFSGWQRQKVGHTIQAILEDAIFSLDSSKPAKVVAAGRTDAGVHAAGQV 76 Query: 62 AHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD V W P L L +++ D++ +HA SA+ R Y Y I Sbjct: 77 VHFDSFGPIPVHRW-PSALNGRLPEAIRVRDSVE------QSLDWHACHSAVYRRYRYII 129 Query: 117 ITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P W LD E M AA+ L+G HDF+ F+ + TI Sbjct: 130 YNGCTPNLFLNPWTWHKYQYQLDEELMEEAAKGLIGMHDFSAFQRSGSNRTHAFTTIQEV 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G+L+ + A FL+ +R VG L +G+ + + D E + + R E AP Sbjct: 190 KLVRHGDLLVFDIQASGFLYGMVRLLVGQLVSIGEHRLSINDFETRWKLKLRSEVKEAAP 249 Query: 236 PEGLYFDSVEY 246 GL F Y Sbjct: 250 ARGLCFIRAGY 260 >gi|242243978|ref|ZP_04798421.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis W23144] gi|242232611|gb|EES34923.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis W23144] Length = 267 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ + + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSKIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDRNRNNVPLTAPPDGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|303288620|ref|XP_003063598.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454666|gb|EEH51971.1| predicted protein [Micromonas pusilla CCMP1545] Length = 261 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 127/267 (47%), Gaps = 36/267 (13%) Query: 4 YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHALR 59 Y + + Y+G Y G+Q Q ++ ++QG +EKA+ +TGE + + +GRTD+GVHA Sbjct: 3 YALTLAYDGENYLGFQYQPRDAKTVQGEVEKALTKITGEDRDFLGIQASGRTDAGVHARG 62 Query: 60 QVAHF-------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 QV HF DL R +++N L + ++ FHARF A+R++Y Sbjct: 63 QVLHFYARRPIEDLAR------FQRSMNGVL--PRDVRVMKAIRPHPAFHARFHAVRKTY 114 Query: 113 LYRIITR--QAPL----ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y + TR P AL G W P D E +R A+ VG DF+ F + + Sbjct: 115 HYYLDTRLTMDPFLRRHALHVG--WNPP---DVEKLRRGAECFVGTRDFSAFSNKPRDKT 169 Query: 167 ---SPIRTIDHFDVNSF--GNLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEK 220 P+RTI FDVN L+ + V F++ Q+R+ VG++ K D+ Sbjct: 170 LVRDPVRTIYRFDVNELKGDGLLRLEVEGNGFMYKQVRNMVGAMITAATSKKMQPADIAA 229 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 L+ +DR AP GL+ V Y Sbjct: 230 MLEGKDRGVAPMGAPAHGLFLHDVVYP 256 >gi|311258299|ref|XP_003127542.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Sus scrofa] Length = 306 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 136/273 (49%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGW---QRQKNGSSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHAL 58 RY + +Y G+ + G + ++ +Q +E+A + + V + RTD+GVHAL Sbjct: 13 RYLVYFQYLGTDFNGVAAVRGPQHAVGVQNYLEEAAERLNSVVPVKFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR++A R+YL Sbjct: 73 SNAAHLDIQRRSGQPPFSPEVLTEALNTHLR-HPAIRVLQAFRVPSHFHARYAATSRTYL 131 Query: 114 YRIIT---RQAPLAL-EKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T R L++ E+ R W L LD M+ AAQHL+G HDF+ F+S A+SP Sbjct: 132 YRLATGCPRPDHLSVFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAFQSTGSPATSP 191 Query: 169 IRTIDHFDVNSFGN-------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V+ + + ++SFL+ Q+R L VG G T Sbjct: 192 VRTLRRASVSPEPSSPLVLPGESRGLRFWSLEFESQSFLYRQVRRMTAVLVAVGLGALTP 251 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L+++D + +AP GL+ SV Y Sbjct: 252 AQVKMILESRDPLGRHQSRVAPAHGLFLKSVLY 284 >gi|189501513|ref|YP_001957230.1| tRNA pseudouridine synthase A [Candidatus Amoebophilus asiaticus 5a2] gi|189496954|gb|ACE05501.1| tRNA pseudouridine synthase A [Candidatus Amoebophilus asiaticus 5a2] Length = 253 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 11/251 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ Y GWQ Q+N +S+Q I+K + + + + G+ RTD+GVHA +Q Sbjct: 1 MRYFLEIAYQGTHYHGWQIQQNATSVQAVIQKKLTQLLSTNIEIVGSSRTDTGVHAQQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH D+ L LN L + I+IL + V H+RF A+ R+Y+Y+I + Sbjct: 61 AHVDMPFTIDIDKLKYKLN--LIVPSDIAILGIHPVLPTAHSRFDALSRTYVYKISCTKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTID-HF 175 P + ++ + LD E M AA L +F +F + H + I+ H+ Sbjct: 119 PFM--QATTYVFRRVLDLEKMNEAAAILKIYKNFESFSKVGSITDHTLYPNLCNIIEAHW 176 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 S LI ++ A FL +R+ VG+L VG GK + D E L +DR L P Sbjct: 177 STGSNDQLI-FQITANRFLRGMVRAIVGNLLEVGLGKCSVKDFEYTLVQKDRNLAASLVP 235 Query: 236 PEGLYFDSVEY 246 GL +V Y Sbjct: 236 ACGLTLVNVTY 246 >gi|167629501|ref|YP_001680000.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1] gi|167592241|gb|ABZ83989.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1] Length = 259 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 122/244 (50%), Gaps = 13/244 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ Y G+Q Q+N + +IQ ++ +AI ++TGE V V+ AGRTD+GVHA Q Sbjct: 5 RLKLTVAYDGTCYHGFQTQENPALPTIQDALVRAIKVLTGEEVKVNCAGRTDAGVHARGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F A+NA L ++++ V FH+RF A+ + Y Y I + Sbjct: 65 VVDFVTSSPIPDDRFPFAMNAIL--PPDVAVVAAKTVPLAFHSRFGALGKHYRYTIYNHR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFD 176 P + + + L E M AAQ VG HDF F C SP +RT+ D Sbjct: 123 IPSPFHRRYSHQVFPPLQFEAMAAAAQCFVGTHDFRGF----CATGSPVKDFVRTVYRCD 178 Query: 177 VN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + + V+ FL+ IR G+L VG GK ++ + ++DR G AP Sbjct: 179 LTRQEEHRLVLDVMGNGFLYNMIRIIAGTLIDVGKGKIALEEIPAIIASRDRTRAGMTAP 238 Query: 236 PEGL 239 P+GL Sbjct: 239 PQGL 242 >gi|256827610|ref|YP_003151569.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641] gi|256583753|gb|ACU94887.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641] Length = 273 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 127/259 (49%), Gaps = 16/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M ++I YNG+ + G+ RQ+ ++QGS+E+A+ L+ V AGRTD+GVHA Sbjct: 1 MATIALLISYNGAPFHGFARQEGDLLTVQGSLEEALSLLYRREVETVCAGRTDTGVHARG 60 Query: 60 QVAHFDLVREWV----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV F++ E + P L ++LNA D I I L F ARF A R Y Y Sbjct: 61 QVVTFEVTPEELASHTPHSLIRSLNALTH--DAIGIRQLRRAPDGFSARFDAKSRHYRYF 118 Query: 116 IITRQAPLALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--- 170 I P + + W + SLD M AA +LVG HDF +F A P R Sbjct: 119 ISDGSVPPLVMRDFCWQVRGGVSLDANAMTAAAAYLVGEHDFKSFCLAVSAAGKPTRREV 178 Query: 171 ---TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 T++ +V ++ I ++ SFLH+ +R+ G+L VG G + + + L A DR Sbjct: 179 LSLTVERIEVLG-DEVVCIDIIGSSFLHSMVRTIAGTLVAVGRGLRPPSWMAEVLAACDR 237 Query: 228 KECGPLAPPEGLYFDSVEY 246 G AP GL F V+Y Sbjct: 238 TAAGEKAPAAGLVFWDVDY 256 >gi|126697063|ref|YP_001091949.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9301] gi|166228747|sp|A3PF23|TRUA_PROM0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126544106|gb|ABO18348.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9301] Length = 268 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQ+QKN +++Q +++A+ +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGSHYSGWQKQKNATTVQEILDRALLKITNHTVQTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D+ LN+ L S I IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHCDVDCVVPGNSYSDVLNSLLPSS--IRILESIEVKDSWHACYSALYRHYRYVINNSK 118 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W K LD M A++ ++G HDF F+ ++ I I + D+ Sbjct: 119 FPNLFIDNWSWHRYQKVLDEVLMLNASRQMIGEHDFFAFQKTGSNRTNSITKIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R +G L LVG+ K + + + + AP +GL Sbjct: 179 VEDLIFVDIKATGFLYGMVRLIIGQLVLVGENKISPEIFTDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|307701658|ref|ZP_07638674.1| tRNA pseudouridine synthase A [Mobiluncus mulieris FB024-16] gi|307613161|gb|EFN92414.1| tRNA pseudouridine synthase A [Mobiluncus mulieris FB024-16] Length = 340 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 132/308 (42%), Gaps = 64/308 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Q Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDL--------VREWVPVILCKALNAYLKISDTISILNLSI---------------- 96 VAHFDL +R+ +L A + S+ I N + Sbjct: 61 VAHFDLPDQFSGDWLRDARDTDFAASLGAIVAASNPPGIANFQLSTGFHRRLDSVLRLVT 120 Query: 97 -----------VDKQ----------------------FHARFSAIRRSYLYRII---TRQ 120 +D Q F ARFSA+ R Y Y +I T + Sbjct: 121 SGNTPTIPGINLDDQPIYPPEANGAIVVTAACPVLDAFDARFSALARHYEYLVIDEPTAR 180 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + W LD M A+ L+G HDF F + ++ IRT+ V+ Sbjct: 181 NPLT--RNTCWWYGAPLDVARMHEASAGLLGTHDFAAFCKPR-EGATTIRTLKQLGVSRL 237 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I V A +F H+ +RS VG+L VG GK + LE+AL + R PLAP +GL Sbjct: 238 APGEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGL 297 Query: 240 YFDSVEYS 247 V+Y Sbjct: 298 TLVRVDYP 305 >gi|172040043|ref|YP_001799757.1| tRNA pseudouridine synthase A [Corynebacterium urealyticum DSM 7109] gi|171851347|emb|CAQ04323.1| tRNA pseudouridine synthase A [Corynebacterium urealyticum DSM 7109] Length = 324 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 132/264 (50%), Gaps = 27/264 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R M + Y+G+ + GW QK G ++QG +E+ + LV V + AGRTD+GVHA Q Sbjct: 50 VRVRMDVSYDGTDFHGWAAQKGGLRTVQGVLEEKLTLVCRTPVELTVAGRTDAGVHADGQ 109 Query: 61 VAHFDLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H D+ E P L + L+ L + I + + F ARFSA+RR Y+ Sbjct: 110 VCHADIPAEAFTHRSLARPEDLVRRLSRMLP--EDIRLNAAVAAPEGFDARFSALRRHYV 167 Query: 114 YRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SS 167 YR+ T P + W P +D E ++IAA LVG ++F + C+A ++ Sbjct: 168 YRVCTAPGGPLPRRVRDTARWRRP--VDLEKVQIAADALVGLNNFAAY----CKAREGAT 221 Query: 168 PIRTIDHF---DVNSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 IR + F DV++ E VVA +F + +RS VG+ VG+GK + L Sbjct: 222 TIRELQEFTWKDVSTPAEPQTYEAHVVADAFCWSMVRSIVGACLTVGEGKRPEGFTAELL 281 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 + +R P+AP EGL V+Y Sbjct: 282 ELDERSSQVPVAPAEGLNLVGVDY 305 >gi|120603116|ref|YP_967516.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris DP4] gi|166228695|sp|A1VF73|TRUA_DESVV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120563345|gb|ABM29089.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris DP4] Length = 297 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 127/292 (43%), Gaps = 48/292 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ GWQ Q++ + ++QG +E + + GE V +H AGRTD+GV Sbjct: 1 MARLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + V KA+NA ++ D I IL++ FHARF A+ + Y YR Sbjct: 61 HADGQVAHVDIPDHKLDVDWQKAINA--QLPDDICILDVRRAADDFHARFDALGKRYTYR 118 Query: 116 I-ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + +TR+ G+ W LD M AA+HL G HDF F++ +S +RT+ Sbjct: 119 LWLTRRFIPPKLHGQVWAT-GPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHA 177 Query: 175 FDVNSFGNL-----------------------------------IEIRVV----ARSFLH 195 G L I + +V FL Sbjct: 178 IRRCPSGTLPAGALLTYGEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLK 237 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +R+ +G L VG G + D+ + DR AP GL V Y Sbjct: 238 QMVRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYP 289 >gi|312129758|ref|YP_003997098.1| tRNA pseudouridine synthase a [Leadbetterella byssophila DSM 17132] gi|311906304|gb|ADQ16745.1| tRNA pseudouridine synthase A [Leadbetterella byssophila DSM 17132] Length = 251 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 120/248 (48%), Gaps = 11/248 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ + GWQ Q ++QG +EKA+ V + + G+ RTD+GVHA +Q Sbjct: 1 MRYFIEISYLGTHFHGWQIQPGADTVQGELEKALSTVLNAPISIMGSSRTDTGVHARQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL +E + + LN +L I+I N + + HARF A R Y+YRI+ + Sbjct: 61 AHVDLPQE-IHAGYIQRLNRFL--PKDITIKNFYPLSDEAHARFDATGRKYIYRILHSKD 117 Query: 122 PLALEKGRAWL---IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + W+ + D + M AA+ L D+ +F + ++ TI Sbjct: 118 SF-----QQWICAHYSRRPDVDAMNKAAKILFLHTDYQSFSKVKTDVTTFDCTITEAVWR 172 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +E + A FL +R+ VG+L VG GK + E + A+DR + G EG Sbjct: 173 YVDERLEFHISANRFLRGMVRAVVGTLLEVGYGKIGLQEFENIILAKDRTKAGTAVKAEG 232 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 233 LTLERVYY 240 >gi|311744771|ref|ZP_07718567.1| tRNA pseudouridine synthase A [Aeromicrobium marinum DSM 15272] gi|311311888|gb|EFQ81809.1| tRNA pseudouridine synthase A [Aeromicrobium marinum DSM 15272] Length = 262 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 120/249 (48%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q ++QG IE A+ L + AGRTD+GVHA Sbjct: 1 MRLRIDLAYDGTDFRGWAVQPGQRTVQGVIESALGTMLRLDPTPTLTCAGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL + P +L + L YL D I I ++ F ARF+A R Y+YR+ Sbjct: 61 QVAHVDL--DTHPGVLERRLRRYL--PDDIRIKSVVEAPPGFDARFAATERRYVYRMTDH 116 Query: 120 QA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A P L + P+ L + M AA+HL+G+HDF F A++ IRT+ Sbjct: 117 PAGPDPLARRMIVHHPRPLSVDLMNAAAEHLLGQHDFAAFCKKRAGATT-IRTLLALRTI 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I V A +F H +RS +G L VG+ ++ + L + R + P G Sbjct: 176 RGGETIATTVRADAFCHAMVRSLMGCLVAVGERRFPPEFAAEVLSGRVRDGRVKVMEPHG 235 Query: 239 LYFDSVEYS 247 L + V Y Sbjct: 236 LVLEEVSYP 244 >gi|27262396|gb|AAN87479.1| tRNA pseudouridine synthase A [Heliobacillus mobilis] Length = 249 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 14/240 (5%) Query: 8 IEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y+G+ Y G+Q Q+ N +IQ + +AI ++TGE V + AGRTD+GVHA QV F Sbjct: 1 MSYDGTSYHGFQTQEDPTNLPTIQDELMRAIQVLTGEEVKITCAGRTDAGVHARGQVVDF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 A+N+ L I+++ V + FH+RF A+ + Y Y I + Sbjct: 61 LTTSRIPDEKFPLAMNSLLP--KDIAVVKAETVAEDFHSRFGALGKHYRYSIYNHRIHSP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI----RTIDHFDVN-S 179 ++ + L M+ AA + VG HDF F C SP+ RTI H + + Sbjct: 119 FHHRYSYQVYPPLHVAAMQEAAGYFVGTHDFRGF----CATGSPVKDFVRTIWHCTLTVT 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 NL+ + V+ FL+ +R G+L VG GK + + + ++DR + G APP+GL Sbjct: 175 EENLLLMDVMGDGFLYNMVRIITGTLVDVGKGKIAPESIPQIIASRDRTQAGTTAPPQGL 234 >gi|193212885|ref|YP_001998838.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327] gi|193086362|gb|ACF11638.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327] Length = 238 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 112/242 (46%), Gaps = 5/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M IEY+G+ Y GWQRQ ++QG IE+ + +T E V + GAGRTD GVHA QVA F Sbjct: 1 MQIEYDGTDYSGWQRQPGDVVTVQGEIERVLGRITQEPVSIDGAGRTDRGVHARGQVASF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + E + + N+ L TI I ++ V + FHARFSA R Y Y ++ R P A Sbjct: 61 AVASEMPLGRMMHSANSLLP--STIRITSMRQVPESFHARFSATSREYRYVLLER--PSA 116 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ A D M A LVG HDF F + T+ G Sbjct: 117 IDSRFAGCSHGKPDVVLMNRLAAMLVGTHDFAAFSKETPDQQGTLCTVTEARWYRSGRFH 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A FL + +R V + VG G+ + + + L R A P GL+ V Sbjct: 177 VFRIEANRFLRSMVRFLVAGMIEVGMGRLSEEEFSRMLVDGGRPASLVPADPAGLFLWKV 236 Query: 245 EY 246 Y Sbjct: 237 RY 238 >gi|302338166|ref|YP_003803372.1| tRNA pseudouridine synthase A [Spirochaeta smaragdinae DSM 11293] gi|301635351|gb|ADK80778.1| tRNA pseudouridine synthase A [Spirochaeta smaragdinae DSM 11293] Length = 247 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 113/243 (46%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 MI+ Y+G + GWQ Q+ ++QG IE A+ + + V V AGRTDSGVHA QV HFD Sbjct: 1 MIVAYDGRKFSGWQVQREDRTVQGVIEAALESMEKQKVRVFAAGRTDSGVHARGQVVHFD 60 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + ALNA L + I+ V FHAR+SA RSY Y + Sbjct: 61 TSLSSIEADKFAPALNAILPAD--VRIVGSYAVPDDFHARYSAKARSYRYFLYPGVCVSP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L + + + A L+G HDF++F + + S +R I +I Sbjct: 119 LLRPYCYARRSLPSIGALNRAVSPLLGSHDFSSFSASGDPSPSKVRVIYQAVFLQHRGMI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E R+ +FL +RS VG+ V + + + L +DR G AP GL+F V Sbjct: 179 EFRITGNAFLWRMVRSIVGTALEVASAEEPARAMRLILDEKDRSLAGTTAPARGLFFWRV 238 Query: 245 EYS 247 Y+ Sbjct: 239 HYT 241 >gi|76637689|ref|XP_875031.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus] gi|297484219|ref|XP_002694181.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus] gi|296479092|gb|DAA21207.1| pseudouridylate synthase-like 1 [Bos taurus] Length = 303 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 134/273 (49%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHAL 58 RY + +Y G+ + G + +Q +E+A + + V + RTD+GVHAL Sbjct: 9 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 68 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +LK I +L V FHAR +AI R+YL Sbjct: 69 SNAAHLDIQRRSDLPPFSPEVLTEALNTHLK-HPAIRVLQAFRVPSHFHARHAAISRTYL 127 Query: 114 YRIIT---RQAPLAL-EKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T R L + E+ R W L LD M+ AAQHL+G HDF+ F+S ASSP Sbjct: 128 YRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPASSP 187 Query: 169 IRTIDHFDV-----NSFGNLIEIRVV--------ARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V + F E R + ++SFL+ Q+R L VG G Sbjct: 188 VRTLRRASVSPDPASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGALMP 247 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L+++D K +AP GL+ SV Y Sbjct: 248 AQVKAILESRDPLGKHQSRVAPAHGLFLKSVLY 280 >gi|222630953|gb|EEE63085.1| hypothetical protein OsJ_17893 [Oryza sativa Japonica Group] Length = 279 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 10/209 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVHAL 58 ++ M+I Y+G+ + GWQ Q + +IQ SIE A+ +T E+ +V GAGRTD+GVHA Sbjct: 64 KWRMVIAYDGTKFKGWQYQPSPPTIQCSIENALTRITKLDRKELCLV-GAGRTDTGVHAW 122 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + + + A+N L I + +S +FHAR S + Y Y+I Sbjct: 123 GQVAHFTTPFSYHCLDSMHSAINGLLP--HEIRVREISAAKPEFHARTSTRSKIYHYKIY 180 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHC-QASSPIRTIDHF 175 A+ L+ + MR AA+H VG HDFT+F ++H + SPI+ I F Sbjct: 181 NGPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRF 240 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 DV G ++++ + FL+ Q+R+ GS Sbjct: 241 DVIEMGAILQLEIEGTGFLYRQVRNMAGS 269 >gi|151554108|gb|AAI49177.1| PUSL1 protein [Bos taurus] Length = 312 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 134/274 (48%), Gaps = 32/274 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHAL 58 RY + +Y G+ + G + +Q +E+A + + V + RTD+GVHAL Sbjct: 34 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 93 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +LK I +L V FHAR +AI R+YL Sbjct: 94 SNAAHLDIQRRSDLPPFSPEVLTEALNTHLK-HPAIRVLQAFRVPSHFHARHAAISRTYL 152 Query: 114 YRIIT-----RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 YR+ T + P+ E+ R W L LD M+ AAQHL+G HDF+ F+S ASS Sbjct: 153 YRLATGCPRPDRLPV-FERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPASS 211 Query: 168 PIRTIDHFDV-----NSFGNLIEIRVV--------ARSFLHTQIRSFVGSLKLVGDGKWT 214 P+RT+ V + F E R + ++SFL+ Q+R L VG G Sbjct: 212 PVRTLRRASVSPDPASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGALM 271 Query: 215 STDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L+++D K +AP GL+ SV Y Sbjct: 272 PAQVKAILESRDPLGKHQSRVAPAHGLFLKSVLY 305 >gi|46579324|ref|YP_010132.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. Hildenborough] gi|51316681|sp|Q72DL8|TRUA_DESVH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46448738|gb|AAS95391.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. Hildenborough] gi|311233151|gb|ADP86005.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris RCH1] Length = 297 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 127/292 (43%), Gaps = 48/292 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ GWQ Q++ + ++QG +E + + GE V +H AGRTD+GV Sbjct: 1 MARLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + V KA+NA ++ D I IL++ FHARF A+ + Y YR Sbjct: 61 HADGQVAHVDIPDHKLGVDWQKAINA--QLPDDICILDVRRAADDFHARFDALGKRYTYR 118 Query: 116 I-ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + +TR+ G+ W LD M AA+HL G HDF F++ +S +RT+ Sbjct: 119 LWLTRRFIPPKLHGQVWAT-GPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHA 177 Query: 175 FDVNSFGNL-----------------------------------IEIRVV----ARSFLH 195 G L I + +V FL Sbjct: 178 IRRCPSGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLK 237 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +R+ +G L VG G + D+ + DR AP GL V Y Sbjct: 238 QMVRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYP 289 >gi|329938203|ref|ZP_08287654.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045] gi|329302692|gb|EGG46582.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045] Length = 288 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 123/254 (48%), Gaps = 11/254 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHA 57 +R + + Y+G+G+ GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 9 FVRVRLDLSYDGTGFSGWAKQAGGRRTVQGEIEDALRTVTRSRETFELTVAGRTDAGVHA 68 Query: 58 LRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QVAH DL RE W L K L ++ + + L F ARFSA+ R Y Y Sbjct: 69 RGQVAHVDLPREVWAEHHGKLLKRLAG--RLPRDVRVWALREAPAGFDARFSAVWRRYAY 126 Query: 115 RIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R+ + L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 127 RVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAY-CKKREGATTIRTLQ 185 Query: 174 HFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + G+ ++ V A +F H +RS +G+L VGDG K L A R Sbjct: 186 ELSLARGGDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRAPDWPAKVLAAGVRDSAVH 245 Query: 233 LAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 246 VVRPHGLTLEEVGY 259 >gi|156538761|ref|XP_001607889.1| PREDICTED: similar to CG34140-PA [Nasonia vitripennis] Length = 298 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 131/284 (46%), Gaps = 42/284 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVH 56 RY + + Y G+ Y G Q+ N + +IQG+IE ++ I + AGRTD+GVH Sbjct: 7 RYLLKLSYIGTSYRGSQKHVNNAVVDIDTIQGAIEYSMRRFNFSNIPTISLAGRTDAGVH 66 Query: 57 ALRQVAHFDLVREWV--PVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYL 113 AL AH DL L + +N L + I I++ V K FHAR+SA R+YL Sbjct: 67 ALCTSAHVDLEHSGTLDTEYLVRMMNRNLINANHEIRIMSAHEVSKDFHARYSAKSRTYL 126 Query: 114 YRIITRQAPLA-----LEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTF------- 158 YR+I + PL E R+ + P++ D E +R + G DF TF Sbjct: 127 YRLIIPKDPLDHRFPIAEANRSLFLNMYPQNFDIERLRSGIKLFCGTKDFMTFSARKRDR 186 Query: 159 -----------RSIHC--QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 R++H + + P+ + D N + + +RSFL+ QIR VGSL Sbjct: 187 NPEFEMRRNFVRTLHVTMKEAGPLMSFDPLSKNL--DYWHLEFTSRSFLYNQIRRIVGSL 244 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 +G K + D++ +Q P A P GLY +VEY Sbjct: 245 IALGSHKVSEEDIQTMIQVPSHHNWNPHVTPAAPRGLYLKNVEY 288 >gi|327539206|gb|EGF25829.1| tRNA pseudouridine synthase A [Rhodopirellula baltica WH47] Length = 276 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 124/257 (48%), Gaps = 16/257 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + + Y+G+ Y GWQ Q SIQ +E+ I + G V V G+GRTD+GVHA+ QVA Sbjct: 10 FHLTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTDAGVHAIGQVAR 69 Query: 64 FDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++ W V L +A+N+ K+ + I + + ++FH A + Y Y + + Sbjct: 70 C-VLPAWKANTVALQRAINS--KLPNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGS 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT------IDHF 175 + +D M+ AA VGRHDF F+ + S +RT I Sbjct: 127 RDPFANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHLARWIPRV 186 Query: 176 DVNSFGNLIE-----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 G +E + FL+ +R+ +G++ VG GK +++ L ++DRK Sbjct: 187 ATGPTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKPLDWIDEVLASRDRKMA 246 Query: 231 GPLAPPEGLYFDSVEYS 247 GP APP+GL+ V+Y Sbjct: 247 GPTAPPQGLFLCRVDYP 263 >gi|283457578|ref|YP_003362161.1| pseudouridylate synthase [Rothia mucilaginosa DY-18] gi|283133576|dbj|BAI64341.1| pseudouridylate synthase [Rothia mucilaginosa DY-18] Length = 348 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 122/274 (44%), Gaps = 41/274 (14%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GS + GW Q N ++QG IE A+ L+ V AGRTD+GVHA Q H DL E Sbjct: 54 YDGSLFSGWAAQPNLVTVQGVIENALELILRAPHRVVVAGRTDAGVHAEAQTLHCDLSDE 113 Query: 70 -WV-----------PVILCKALNAYLK-------------------ISDTISILNLSIVD 98 W L + L L+ + I I ++ V Sbjct: 114 DWTRLQGRTGEDDPTAALGRRLTGALQRCLYDAEEQLNLPKNVRGILQGAIQIHRVAEVP 173 Query: 99 KQFHARFSAIRRSYLYRIITRQAP--LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 F ARFSA R Y+YRI A L + W +P+ LDC ++ +AQ L+G DF Sbjct: 174 FDFDARFSATGRRYVYRIADGAADGLNPLHRTYTWAVPEHLDCADLNESAQQLLGLRDFL 233 Query: 157 TFRSIHCQASSPIRTIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +F C+ TI SF LIE+ VVA +F H +RS VG+L L G GK Sbjct: 234 SF----CKPREGATTIRELRELSFTRTESALIEVCVVADAFCHHMVRSLVGALVLYGTGK 289 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L + ++ R+ LAPP L + Y Sbjct: 290 RDAAWLRERIENPGREASLTLAPPHALALAEIYY 323 >gi|269976928|ref|ZP_06183902.1| tRNA pseudouridine synthase A [Mobiluncus mulieris 28-1] gi|269934759|gb|EEZ91319.1| tRNA pseudouridine synthase A [Mobiluncus mulieris 28-1] Length = 326 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 135/306 (44%), Gaps = 60/306 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Q Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDLVRE----WV---------------------PVI--------LCKALNAYLKI-- 85 VAHFDL + W+ P I L + L++ L++ Sbjct: 61 VAHFDLPDQFSGDWLRDAHDTDFAASLGAIVAASNPPGIANFQLSTGLHRRLDSVLRLVT 120 Query: 86 ---SDTISILNLS-------------------IVDKQFHARFSAIRRSYLYRIITRQ-AP 122 + TI LNL V F ARFSA+ R Y Y +I A Sbjct: 121 SGNTPTIPGLNLDDQPIYPPEANGAIVVTTARPVPDAFDARFSALARHYEYLVIDEPTAR 180 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG- 181 L + W L+ M A+ L+G HDF F A++ IRT+ V+ Sbjct: 181 NPLTRNTCWWYGAPLNVARMHEASAGLLGTHDFAAFCKPREGATT-IRTLKQLGVSRLAP 239 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I V A +F H+ +RS VG+L VG GK + LE+AL + R PLAP +GL Sbjct: 240 GEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGLTL 299 Query: 242 DSVEYS 247 V+Y Sbjct: 300 VRVDYP 305 >gi|325847073|ref|ZP_08169899.1| tRNA pseudouridine synthase A [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481045|gb|EGC84090.1| tRNA pseudouridine synthase A [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 252 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 120/244 (49%), Gaps = 11/244 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I+Y+GS + G+Q QK+ ++Q +E+AI VTGE + +GRTDSGVHA +F Sbjct: 10 IQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANEMYINFLTA 69 Query: 68 REWVPVILCKALNAYLKISDTISILNLS--IVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ++ I + +LK IL LS VDK FHARFS ++Y Y I + + Sbjct: 70 KD----IRADKFHFHLKKYLPADILALSSKKVDKNFHARFSVKTKTYKYVISLEKILHPI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF---GN 182 + I LD + ++ + L G HDF F + + + I TI D + N Sbjct: 126 YRNYMEQITYKLDFDKLKQGMEILKGEHDFRAF--MLSEKNDIINTIRKIDDCYYILDNN 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ + A SFLH Q+R GSL + GK + D + ++K P GLY D Sbjct: 184 ILFLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKFYFDKNNKKRANPTLKAGGLYLD 243 Query: 243 SVEY 246 S++Y Sbjct: 244 SIDY 247 >gi|225020488|ref|ZP_03709680.1| hypothetical protein CORMATOL_00495 [Corynebacterium matruchotii ATCC 33806] gi|224946877|gb|EEG28086.1| hypothetical protein CORMATOL_00495 [Corynebacterium matruchotii ATCC 33806] Length = 290 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 121/267 (45%), Gaps = 31/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 IR + + Y+G+ + GW RQ + ++Q +E A+ LV + + + AGRTD+GVHA+ Sbjct: 4 IRIRLDLAYDGTHFHGWARQGHSELRTVQQVLEDALTLVLRQPIALTVAGRTDAGVHAVA 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT--------------ISILNLSIVDKQFHARF 105 QVAHFD + AL+ D + + +I F ARF Sbjct: 64 QVAHFD--------VPAAALDTRSIAGDPGRLVRRLARLLPTDVRVHAATIAPPDFDARF 115 Query: 106 SAIRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+RR Y+YR+ T + L PK +D M+ A L+G HDF F H Sbjct: 116 SALRRHYVYRLTTHPRGALPTRVTDTAHHPKPVDLAAMQACAAELIGLHDFAAF-CRHRD 174 Query: 165 ASSPIRTIDHFDVNSFGNLI-----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 ++ IR + F N I E V A +F + +RS VG +VG+GK + Sbjct: 175 GATTIRDLQEFTWNDISTPIEPDTFEAHVTADAFCWSMVRSLVGCCLVVGEGKRPAGFAT 234 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 L R P+AP GL V+Y Sbjct: 235 SLLAETSRSALVPVAPAAGLSLVGVDY 261 >gi|332290819|ref|YP_004429428.1| tRNA pseudouridine synthase A [Krokinobacter diaphorus 4H-3-7-5] gi|332168905|gb|AEE18160.1| tRNA pseudouridine synthase A [Krokinobacter diaphorus 4H-3-7-5] Length = 257 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 115/250 (46%), Gaps = 9/250 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G Y GWQRQ N ++Q +IEKA+ ++ + V + GAGRTD+GVHA + Sbjct: 1 MRYFIELSYFGKHYHGWQRQPNAVTVQETIEKALSMILRKPVQIMGAGRTDAGVHATQMY 60 Query: 62 AHFDLVREWVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AHFD E L N L I+ + V + H RF A RSY+YRI Sbjct: 61 AHFDWDGEQFTTQESIEKLTHKFNRLL--PKDIAFKRIFQVADKAHTRFDATSRSYVYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + P + A + + E M AA L+ DF F + ++ + I Sbjct: 119 GKEKNPFTSD--HAPTVRNEVHIEAMNKAAAILLDYSDFECFSKSNTDVNTYLCDITRAT 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + A FL +R+ VG+L +G+GK T + + + + R + G P Sbjct: 177 WIETEDEYHFHITANRFLRNMVRAIVGTLLEIGEGKRDITWMHEVITGKSRSQAGKSVPG 236 Query: 237 EGLYFDSVEY 246 GLY + Y Sbjct: 237 RGLYLTEILY 246 >gi|330685169|gb|EGG96833.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU121] Length = 267 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + G+Q Q+ G ++Q EK + + + +H + RTD GVHA +Q Sbjct: 1 MRILVEIEYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHIRIHPSSRTDRGVHAYQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + ++ VD+ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELQIENSKWQYAMNSAL--PDDIYVKSVQHVDEDFHCRYDCVGKRYRYKVYQAKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I SLD M AA+ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTYIADSLDLNQMNEAAKRFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK + ++ + L+ ++R + AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRSPEEIPQLLEEKNRNKIPFTAPSEGLYL 238 Query: 242 DSV 244 + V Sbjct: 239 EKV 241 >gi|21223110|ref|NP_628889.1| tRNA pseudouridine synthase A [Streptomyces coelicolor A3(2)] gi|289769686|ref|ZP_06529064.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] gi|8134769|sp|O86776|TRUA_STRCO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3449243|emb|CAA20387.1| putative pseudouridylate synthase [Streptomyces coelicolor A3(2)] gi|289699885|gb|EFD67314.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] Length = 284 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 122/254 (48%), Gaps = 11/254 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHA 57 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 9 FVRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSRETYELTVAGRTDAGVHA 68 Query: 58 LRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QVAH DL RE W V L K L ++ + + L F+ARFSA+ R Y Y Sbjct: 69 RGQVAHVDLPREVWAEHHVKLLKRLAG--RLPRDVRVWALREAPSGFNARFSAVWRRYAY 126 Query: 115 RIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R+ + L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 127 RVTDNPGGVDPLLRGHVLWHDWPLDVDAMNAAARGLLGEHDFAAY-CKKREGATTIRTLQ 185 Query: 174 HFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V ++ V A +F H +RS +G+L VGDG K L A R Sbjct: 186 ELSLVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGPEWPAKVLAAGVRDSAVH 245 Query: 233 LAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 246 VVRPHGLTLEEVGY 259 >gi|296268583|ref|YP_003651215.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833] gi|296091370|gb|ADG87322.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833] Length = 294 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 36/275 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALR 59 +R+ + + Y+G+ + GW RQ ++QG +E A+ L + AGRTD+GVHA Sbjct: 6 VRFRLDLGYDGTDFQGWARQPGLRTVQGELEAALATLLRLEAPPRLTVAGRTDAGVHARG 65 Query: 60 QVAHFDLVREWVPVI-----------------LCKALNAYLK--ISDTISILNLSIVDKQ 100 QV H DL + ++ LC AL L + + + +S+ Sbjct: 66 QVVHVDLPLAALAILEPRGRETATPPAERLPELCSALVRRLAAVLPPDVRVFAVSVPPDG 125 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTT 157 F ARFSA+ R Y YR+ AP ++ R + PK LD E M A+ L+G HDF Sbjct: 126 FDARFSALCRRYCYRVC--DAPGGVDPLRRREVLWYPKPLDVELMNAASVRLLGEHDFAA 183 Query: 158 FRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK---- 212 F + ++ IR + F+ +IE VVA +F H+ +RS VG++ VG+GK Sbjct: 184 FCKKR-EGATTIRELRRFEWARRDDGIIEATVVADAFCHSMVRSLVGAVLAVGEGKRPVE 242 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 W + L +A+ R +AP GL + V Y Sbjct: 243 WPAEVLARAV----RDSAVRVAPAHGLTLEEVRYP 273 >gi|46446316|ref|YP_007681.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia amoebophila UWE25] gi|51316630|sp|Q6MDE3|TRUA2_PARUW RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|46399957|emb|CAF23406.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia amoebophila UWE25] Length = 262 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 8/244 (3%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G YFGWQ+ G S++ +++ ++ + + + A RTD GVHA Q+ +F Sbjct: 22 IAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHTISLQAASRTDKGVHARGQIVNFLTT 81 Query: 68 REWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + +LN+ L + IL+ + FH + + + Y Y I L Sbjct: 82 KSITDLQKFILSLNSLLPTD--LRILSAEKMPSTFHPTLNCVAKEYCYYICYDFVQLPEY 139 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTID--HFDVNSFGN 182 + +W P L M A L+G HDF+ F + + + IR + H +V + Sbjct: 140 RPYSWHCPFPLMLGKMTQAISVLIGEHDFSAFCNFKKNVNYTDYIRRVQAIHLEVLNHKR 199 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L IR+ FL+ +R+ VG+L +G GK D+ LQ+QDRK G AP GL+ Sbjct: 200 LC-IRIKGNHFLYKMVRNIVGTLIYIGKGKLMVEDIPSILQSQDRKMAGVTAPAHGLFLQ 258 Query: 243 SVEY 246 +V Y Sbjct: 259 TVLY 262 >gi|302757930|ref|XP_002962388.1| hypothetical protein SELMODRAFT_78854 [Selaginella moellendorffii] gi|300169249|gb|EFJ35851.1| hypothetical protein SELMODRAFT_78854 [Selaginella moellendorffii] Length = 268 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 25/261 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ +++ Y+G+ + GWQ Q + ++QG IE A+ +T E +++ A RTD+GVHAL Sbjct: 1 KWRIVVSYDGTRFSGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALG 60 Query: 60 QVAHF-------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 QVAHF DL R + + LN L I + +S FHA+ A + Y Sbjct: 61 QVAHFHSPACIGDLSR------IHRGLNGTL--PHEIRVREISPAKSSFHAQACARTKRY 112 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIR 170 Y++ L + A+ +P+ LD M A + VG+HDF+TF S +P+R Sbjct: 113 QYKLFVAPVMDPLLRLYAYHVPERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVR 172 Query: 171 TIDHFDV--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 I FD+ + G ++ + F H QIR+ VG + +G G+ + + + L +DR+ Sbjct: 173 EILRFDLLEQASGPVLCFEIEGTGFFHKQIRNMVGLIVAIGKGEHEARVIPELLAMKDRQ 232 Query: 229 ECGPL---APPEGLYFDSVEY 246 + + AP GL SV Y Sbjct: 233 KLARVSITAPSRGLTLVSVHY 253 >gi|256785794|ref|ZP_05524225.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] Length = 275 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 122/253 (48%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 1 MRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSRETYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QVAH DL RE W V L K L ++ + + L F+ARFSA+ R Y YR Sbjct: 61 GQVAHVDLPREVWAEHHVKLLKRLAG--RLPRDVRVWALREAPSGFNARFSAVWRRYAYR 118 Query: 116 IITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 119 VTDNPGGVDPLLRGHVLWHDWPLDVDAMNAAARGLLGEHDFAAY-CKKREGATTIRTLQE 177 Query: 175 FD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V ++ V A +F H +RS +G+L VGDG K L A R + Sbjct: 178 LSLVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGPEWPAKVLAAGVRDSAVHV 237 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 VRPHGLTLEEVGY 250 >gi|331090989|ref|ZP_08339831.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330405211|gb|EGG84747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 248 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQR-QKNGSS--IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +EY+GS Y GWQR KN SS I I + I +T E V + RT+ GVHA Q+ Sbjct: 6 LTLEYDGSRYQGWQRLGKNESSNTIANKIIEVIKKMTNEDVELFCGARTEVGVHAYAQIV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + + + LN YL + I++ ++ ++FHA +A + Y+YR+ + P Sbjct: 66 NFKTTSDMKLGEIKQYLNRYLPMD--IAVTDIEEKPERFHASLNATSKIYMYRMAIGEVP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E+ + + K D + M+ AA LVG+HDF F ++ ++ S ++ I D+ + Sbjct: 124 SVFERKYTYYVFKKPDVDVMKQAALLLVGKHDFKNFSTVK-KSKSTVKEIYDIDIYTDDE 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I+I + A FLH R +G+L +G G ++E + + +GLY Sbjct: 183 EIQITLHANDFLHNMARMVIGTLIDIGLGNRKKEEIEDIFNPESSVQASSPCDAKGLYLQ 242 Query: 243 SVEYS 247 V Y Sbjct: 243 EVLYE 247 >gi|300727110|ref|ZP_07060529.1| tRNA pseudouridine synthase A [Prevotella bryantii B14] gi|299775654|gb|EFI72245.1| tRNA pseudouridine synthase A [Prevotella bryantii B14] Length = 259 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 130/266 (48%), Gaps = 27/266 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI------FLVTG----EIVVVHGAGR 50 M RY +I Y+G+ Y GWQ Q NG+S+Q ++ A+ FL+ EI VV GAGR Sbjct: 1 MHRYFIIFAYDGTNYHGWQIQPNGNSVQAELQHALALSLRSFLLLKSNDFEIEVV-GAGR 59 Query: 51 TDSGVHALRQVAHFDLVREWVPVI---LCKALNAYLK--ISDTISILNLSIVDKQFHARF 105 TD+GVHA + AHF+L E P++ CK + + + IS+ ++ V+ HARF Sbjct: 60 TDAGVHARQMAAHFELSEEEFPLLDESKCKQIVYRINRILPRDISVSDVYPVESDMHARF 119 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R+Y Y I T + P P LD + M + ++ DF F C+A Sbjct: 120 SAKWRTYHYYIHTDKNPFLRFYSLETHYP--LDFDLMNEGGKIIMEHQDFAAF----CKA 173 Query: 166 SSPIRTI--DHFD---VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + +T D + V + + + A FL +R+ VG+L L+G K T DL Sbjct: 174 GADNKTTLCDVTECKWVQTSPTSWYLTITANRFLRNMVRAVVGTLFLLGRHKITLDDLRV 233 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 L +R + G P L+ + VEY Sbjct: 234 ILHEGNRSKAGESMPGNALFLEKVEY 259 >gi|239636202|ref|ZP_04677206.1| tRNA pseudouridine synthase A [Staphylococcus warneri L37603] gi|239598218|gb|EEQ80711.1| tRNA pseudouridine synthase A [Staphylococcus warneri L37603] Length = 267 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + G+Q Q+ G ++Q EK + + + +H + RTD GVHA +Q Sbjct: 1 MRILVEIEYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHISIHPSSRTDRGVHAYQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + ++ VD+ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELQIENSKWQYAMNSAL--PDDIYVKSVKQVDEDFHCRYDCVGKRYRYKVYQAKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I SLD M AA+ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTYIADSLDLNQMNEAAKLFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK + ++ + L+ ++R + AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRSPEEIPQLLEEKNRNKIPFTAPSEGLYL 238 Query: 242 DSV 244 + V Sbjct: 239 EKV 241 >gi|158317762|ref|YP_001510270.1| tRNA pseudouridine synthase A [Frankia sp. EAN1pec] gi|158113167|gb|ABW15364.1| tRNA pseudouridine synthase A [Frankia sp. EAN1pec] Length = 275 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 126/255 (49%), Gaps = 17/255 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 +IR + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA Sbjct: 7 LIRLRLDLAYDGTAFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAAG 66 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH D+ + L + LN L + + + L+ F ARFSA+ R Y+YRI Sbjct: 67 QVAHVDIPDDTPVGGLARRLNGVLDRA--VRVKGLAPAPDGFDARFSALSRRYVYRIT-- 122 Query: 120 QAPLALEKGRAW---LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 AP + R + P+ LD M AA L+G HDF F + ++ +RT+ D Sbjct: 123 DAPYGADPLRRFDTLASPRPLDVPAMAEAALLLLGEHDFAAF-CRRREGATTVRTLLRLD 181 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRKECGP 232 V+ ++I V A +F H+ +R+ G+L VG+G+ W + L + + R Sbjct: 182 VSRSRDVILADVEADAFCHSMVRALAGALVAVGEGRRRPEWVAAVLGRGM----RDPAVT 237 Query: 233 LAPPEGLYFDSVEYS 247 + P GL V Y Sbjct: 238 VLPAHGLTLVEVRYP 252 >gi|326799821|ref|YP_004317640.1| tRNA pseudouridine synthase A [Sphingobacterium sp. 21] gi|326550585|gb|ADZ78970.1| tRNA pseudouridine synthase A [Sphingobacterium sp. 21] Length = 255 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 120/251 (47%), Gaps = 14/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + ++G Y GWQ Q+N S+Q + KA+ + V G GRTD+GVHA + A Sbjct: 7 RYFVELAFHGGAYHGWQIQENAISVQEVLNKALGTLLRVPVNTVGCGRTDTGVHAKQLFA 66 Query: 63 HFDLVREWVPVI------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD + V I + LNA L I++ L +V HARF AI+RSY Y I Sbjct: 67 HFD---DAVGAIEGNEERIVTGLNALLPTD--IAVKQLFVVAPNAHARFDAIKRSYEYHI 121 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + P G +W + D E M AA+H++ DF+ F H Q + + + Sbjct: 122 HFGKNPFL--HGFSWQLRDRPDVEAMNEAARHMMKYKDFSCFSKSHTQVFTNNCQLTKAE 179 Query: 177 VNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G + + A FL +R+ VG+L +G+GK + + + +++R G P Sbjct: 180 WQWLDGGRLVFYISADRFLRNMVRAIVGTLMEIGNGKRDLNYIHEVINSKNRSMAGVSVP 239 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 240 ACGLYLTEVLY 250 >gi|302764370|ref|XP_002965606.1| hypothetical protein SELMODRAFT_84331 [Selaginella moellendorffii] gi|300166420|gb|EFJ33026.1| hypothetical protein SELMODRAFT_84331 [Selaginella moellendorffii] Length = 269 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 26/262 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ +++ Y+G+ + GWQ Q + ++QG IE A+ +T E +++ A RTD+GVHAL Sbjct: 1 KWRIVVSYDGTRFSGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALG 60 Query: 60 QVAHF-------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 QVAHF DL R + + LN L I + +S FHA+ A + Y Sbjct: 61 QVAHFHSPACIGDLSR------IHRGLNGTL--PHEIRVREISPAKSSFHAQACARTKRY 112 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIR 170 Y++ L + A+ +P+ LD M A + VG+HDF+TF S +P+R Sbjct: 113 QYKLFVAPVMDPLLRLYAYHVPERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVR 172 Query: 171 TIDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 I F++ S G ++ + F H QIR+ VG + +G G+ + + + L +DR Sbjct: 173 EILRFELLEQASLGPVLCFEIEGTGFFHKQIRNMVGLIVAIGKGEHQARVIPELLAMKDR 232 Query: 228 KECGPL---APPEGLYFDSVEY 246 ++ + AP GL SV Y Sbjct: 233 QKLARVSITAPSRGLTLVSVHY 254 >gi|23503259|ref|NP_699170.1| tRNA pseudouridine synthase-like 1 [Homo sapiens] gi|52783232|sp|Q8N0Z8|PUSL1_HUMAN RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|21706547|gb|AAH34304.1| Pseudouridylate synthase-like 1 [Homo sapiens] gi|22761287|dbj|BAC11527.1| unnamed protein product [Homo sapiens] gi|56204950|emb|CAI23172.1| pseudouridylate synthase-like 1 [Homo sapiens] gi|119576649|gb|EAW56245.1| pseudouridylate synthase-like 1 [Homo sapiens] Length = 303 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 36/276 (13%) Query: 3 RYCMIIEYNGSGYFGW---QRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + + +Q +E+A L + E V + RTD+GVHAL Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR +A R+YL Sbjct: 73 SNAAHLDVQRRSGRPPFPPEVLAEALNTHLR-HPAIRVLRAFRVPSDFHARHAATSRTYL 131 Query: 114 YRIIT----RQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T R E+ W +P LD M+ AAQHL+G HDF+ F+S SP Sbjct: 132 YRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSP 191 Query: 169 IRTIDHFDVNS----------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +RT+ V+ F NL ++SFL+ Q+R L VG G Sbjct: 192 VRTLRRVSVSPGQASPLVTPEESRKLRFWNL---EFESQSFLYRQVRRMTAVLVAVGLGA 248 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K +AP GL+ SV Y Sbjct: 249 LAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 284 >gi|260435918|ref|ZP_05789888.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8109] gi|260413792|gb|EEX07088.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8109] Length = 293 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y GS + GWQRQ+NG S+Q +E AI L V AGRTD+GVHA QV Sbjct: 17 RIALSLQYEGSSFCGWQRQRNGRSVQAVLEDAIAQLDPHRPVQTFAAGRTDAGVHAAGQV 76 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD R+W P ALN ++ TI + +HA +SA R Y Y I Sbjct: 77 VHFDCSGPIPARKWAP-----ALNG--RLPSTIRVRESVARPMDWHACYSATYRRYRYTI 129 Query: 117 ITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + P +W LD MR A ++G HDF+ F + + T+ Sbjct: 130 HNGRRPNLFLSPWSWHRYQHRLDASRMRDALSTMLGLHDFSAFMKAGSRRAHARTTVQEV 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G+L+ + + A FL+ +R + L VG+ + + E+ + + R E AP Sbjct: 190 LVERQGDLLRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVAAFEQRWRERRRHEVKEAAP 249 Query: 236 PEGL 239 GL Sbjct: 250 ATGL 253 >gi|89953446|gb|ABD83318.1| Fgenesh protein 88 [Beta vulgaris] Length = 278 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 119/239 (49%), Gaps = 11/239 (4%) Query: 18 WQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV 73 WQ Q + ++Q +IEKA+ +T E+ VV GAGRTD+GVHA QVAHF + + Sbjct: 26 WQYQASPPTVQCAIEKALTKITHLDRKELSVV-GAGRTDTGVHAWGQVAHFFTPFNYDSL 84 Query: 74 ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 A L SD I + +S QFHARFSA + Y Y I + + Sbjct: 85 DEVHAAFNGLLPSD-IRVREVSPASPQFHARFSAKGKIYRYSIYNSSFMDPFLRYHVYHS 143 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 L+ M AA++ G+HDFT F + + + PI+TI FDV G L+E+ V Sbjct: 144 TYKLNAAVMAEAARYFTGKHDFTAFANAIRNDRVRDPIKTISRFDVTERGPLLELEVEGS 203 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEYS 247 FL+ Q+R+ V L +G + + L+ ++R+E PP GL SV+Y+ Sbjct: 204 GFLYRQVRNMVALLLQIGREAIPPDIVPEILETKNRRELAKYTKSTPPHGLSLVSVKYN 262 >gi|258651414|ref|YP_003200570.1| tRNA pseudouridine synthase A [Nakamurella multipartita DSM 44233] gi|258554639|gb|ACV77581.1| tRNA pseudouridine synthase A [Nakamurella multipartita DSM 44233] Length = 305 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 125/265 (47%), Gaps = 24/265 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G+ + GW Q ++ G + A+ + V + AGRTD+GVHA QVA Sbjct: 27 RLRLDISYDGTDFAGWAIQPGLRTVAGELTSALTTIVRTPVRLVVAGRTDAGVHAAGQVA 86 Query: 63 HFDLVREWVPVILCK----------------ALNAYLKISDTISILNLSIVDKQFHARFS 106 H DL + + ++ + + + + + + F ARFS Sbjct: 87 HVDLPQAALLTVIPRDRADHPDPERAGRLGLLRRLGGLLPPDVRVRAVLAAPEGFDARFS 146 Query: 107 AIRRSYLYRIITRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-- 163 A+RR Y YRI T + + R + ++LD E M +AAQ LVG HDF F C Sbjct: 147 ALRRRYRYRIGTAEWGVEPADRRFVYARRRTLDVEAMTLAAQALVGLHDFHAF----CRP 202 Query: 164 -QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + ++ IR + V G+ + I VVA +F H+ +R+ VGSL VG+ + + + L Sbjct: 203 REGATTIRDLQKLTVTRAGDEVRIDVVADAFCHSMVRALVGSLLAVGELRMPTARPAELL 262 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 A +R +AP GL V+Y Sbjct: 263 AAGERTSAFAVAPAHGLSLVGVDYP 287 >gi|312150754|gb|ADQ31889.1| pseudouridylate synthase-like 1 [synthetic construct] Length = 303 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 36/276 (13%) Query: 3 RYCMIIEYNGSGYFGW---QRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + + +Q +E+A L + E V + RTD+GVHAL Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR +A R+YL Sbjct: 73 SNAAHLDVQRRSGRPPFPPEVLAEALNTHLR-HPAIRVLRAFRVPSDFHARHAATSRTYL 131 Query: 114 YRIIT----RQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T R E+ W +P LD M+ AAQHL+G HDF+ F+S SP Sbjct: 132 YRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSP 191 Query: 169 IRTIDHFDVNS----------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +RT+ V+ F NL ++SFL+ Q+R L VG G Sbjct: 192 VRTLRRVSVSPGQASPLVTPEESRKLRFWNL---EFESQSFLYRQVRRMTAVLVAVGLGA 248 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K +AP GL+ SV Y Sbjct: 249 LAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 284 >gi|147903104|ref|NP_001085529.1| tRNA pseudouridine synthase-like 1 [Xenopus laevis] gi|82236585|sp|Q6GQ53|PUSL1_XENLA RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|49115069|gb|AAH72895.1| MGC80334 protein [Xenopus laevis] Length = 298 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 33/274 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG-----AGRTDSGVHA 57 RY + +Y G+ Y G S+ G ++ + + ++ V + RTDSGVHA Sbjct: 7 RYLVFFQYYGTKYSGVMETPITQSVLG-VQNYLEVAAQKLRPVGTIKFFISSRTDSGVHA 65 Query: 58 LRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 + +AH D+ R + IL +A+N +L+ + I +L V FHAR +A+ R+Y Sbjct: 66 ICNLAHVDIERAKGKPPFTEEILVQAMNHHLQ-PEPIRLLKAIRVCDNFHARHNALSRTY 124 Query: 113 LYRI---ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--S 167 +YR+ +R E W I L+ + A++ L+G H+F+ FRS + + + S Sbjct: 125 VYRVAAGCSRPELPVFEGNLCWAIQDGLNVTAINEASKMLLGTHNFSAFRSANSENAFKS 184 Query: 168 PIRTIDHFDVNSFGNLI------------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 PI+T+ D+N ++ + ARSFL+ Q+R G+L VG G+ T Sbjct: 185 PIKTLQQADINPSCGILTHHWQSRNLQFWDFTFRARSFLYKQVRRMTGALVAVGQGRLTP 244 Query: 216 TDLEKALQAQDRKEC---GPLAPPEGLYFDSVEY 246 +++ L+ QD C +APP GL+ VEY Sbjct: 245 QQIKEFLENQD-PNCFLGNFVAPPHGLFLKDVEY 277 >gi|227876165|ref|ZP_03994281.1| tRNA-pseudouridine synthase I [Mobiluncus mulieris ATCC 35243] gi|306819440|ref|ZP_07453147.1| tRNA pseudouridine synthase A [Mobiluncus mulieris ATCC 35239] gi|227843126|gb|EEJ53319.1| tRNA-pseudouridine synthase I [Mobiluncus mulieris ATCC 35243] gi|304647732|gb|EFM45050.1| tRNA pseudouridine synthase A [Mobiluncus mulieris ATCC 35239] Length = 326 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 136/308 (44%), Gaps = 64/308 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Q Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDLVRE----WV---------------------PVI--------LCKALNAYLKI-- 85 VAHFDL + W+ P I L + L + L++ Sbjct: 61 VAHFDLPDQFSGDWLRDAHDTEFAASLGAIVAASNPPGIANFQLSTGLHRRLESVLRLVT 120 Query: 86 ---SDTISILNLS-------------------IVDKQFHARFSAIRRSYLYRII---TRQ 120 + TI LNL V F ARFSA+ R Y Y +I T + Sbjct: 121 SGNTPTIPGLNLDDQPIYPPEANGAIVVTAARPVPDAFDARFSALARHYEYLVIDEPTAR 180 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + W L+ M A+ L+G HDF F A++ IRT+ V+ Sbjct: 181 NPLT--RNTCWWYGAPLNVARMHEASAGLLGTHDFAAFCKPREGATT-IRTLKQLGVSRL 237 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I V A +F H+ +RS VG+L VG GK + LE+AL + R PLAP +GL Sbjct: 238 APGEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGL 297 Query: 240 YFDSVEYS 247 V+Y Sbjct: 298 TLVRVDYP 305 >gi|153815016|ref|ZP_01967684.1| hypothetical protein RUMTOR_01233 [Ruminococcus torques ATCC 27756] gi|145847584|gb|EDK24502.1| hypothetical protein RUMTOR_01233 [Ruminococcus torques ATCC 27756] Length = 260 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 120/262 (45%), Gaps = 17/262 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ + +IQG +E+ + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + + +N L I IL++ +V FHAR SA+ + Y YRI T Sbjct: 61 QTASVVLPGKVDTALFTEKMNGCLPPD--IRILDVELVKNGFHARKSAVGKVYEYRIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----------RSIHC----QA 165 + + P D MR AA +L G H F + R+I+ Sbjct: 119 IKQDVFTRKYSGHFPGEPDLARMREAAGYLTGTHFFAEYTDKKDNRSVRRTIYSIMIRDE 178 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 D GN I IR FL+ +R G+L VG + T+ +++AL Sbjct: 179 RKDFLPCGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLTG 238 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DR + G LAP GL+ V Y Sbjct: 239 DRSKAGFLAPAGGLFLREVRYE 260 >gi|209527116|ref|ZP_03275630.1| tRNA pseudouridine synthase A [Arthrospira maxima CS-328] gi|209492456|gb|EDZ92797.1| tRNA pseudouridine synthase A [Arthrospira maxima CS-328] Length = 278 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 121/249 (48%), Gaps = 8/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQV 61 R +II+Y+G+ + GWQRQ N ++Q IE AI ++ E V +H AGRTDSGVHA QV Sbjct: 6 RIALIIQYDGTHFHGWQRQPNQRTVQEDIETAIGKVLKQERVPLHAAGRTDSGVHAAAQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD LN+ ++ + I + V K +HARF A R Y Y + T Sbjct: 66 AHFDAPAHIPAYRWATILNS--RLPADVLIRASAPVAKDWHARFDAQWRRYRYSLYTDAR 123 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + LD M A + L+G H + F+ +S P +D DV + Sbjct: 124 PNLFIRRFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQR--AGSSRPHAWVDVQDVQCW 181 Query: 181 GN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I I V A FL+ +R VG L VG G+ + + + + R+ APP+G Sbjct: 182 RSEAFIHIEVQASGFLYGMMRLLVGLLVQVGAGERSLENFQDIWVNERREIVKSAAPPQG 241 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 242 LCLLRVGYP 250 >gi|189500072|ref|YP_001959542.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides BS1] gi|189495513|gb|ACE04061.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides BS1] Length = 233 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 116/242 (47%), Gaps = 10/242 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M IEY+G+ + GWQ+Q G ++QG +E + + E VV+ AGRTD GVHA QVA+F Sbjct: 1 MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSRIVQEEVVMTAAGRTDRGVHARGQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L +LNA L T+ I ++ V FHAR+SA+ R Y Y + + P A Sbjct: 61 RTASCLSTGRLLHSLNALL--PSTVCIRDMQEVPDSFHARYSALFREYRYFFL--EKPSA 116 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L K A + LD + + A LVGRHDF+ + Q S T+ + Sbjct: 117 LGKRYAGVYGGRLDVDRLNRCAGELVGRHDFSAYAKEDAQNGSTFCTVFGASWGRQDEKV 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A FL T +R V + G G+ T E+ + K P A P GL+ V Sbjct: 177 VFRIAANRFLRTMVRFLVSAQLEAGPGELT----ERLRRGNVLKNIVP-ADPAGLFLWKV 231 Query: 245 EY 246 Y Sbjct: 232 LY 233 >gi|326383234|ref|ZP_08204922.1| tRNA pseudouridine synthase A [Gordonia neofelifaecis NRRL B-59395] gi|326197984|gb|EGD55170.1| tRNA pseudouridine synthase A [Gordonia neofelifaecis NRRL B-59395] Length = 296 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 129/263 (49%), Gaps = 28/263 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + R ++I Y+G+ + GW Q ++ +IE+A+ V + + AGRTD+GVHA Q Sbjct: 14 LCRLRLLIGYDGTDFSGWATQPGRRTVCETIEQALGTVLRAPIRLTVAGRTDAGVHAAGQ 73 Query: 61 VAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ + P L + L L D + + + V + F ARFSA+ R+Y Sbjct: 74 VAHCDVPAASLRTRSIDGDPARLVRRLAKMLP--DDVRVKRIEAVSEDFDARFSALARTY 131 Query: 113 LYRIITRQAPLALEKGRA-----WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 YR+ AP E A W P LD E M A+ LVG +DF F + + S+ Sbjct: 132 EYRLT--DAPWGAEPTLARITADWTRP--LDVEAMNTASAGLVGLNDFAAF-CRYREGST 186 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQ 223 IR + FD G ++ V+A +F + +RS VG++ VGDG+ W TDL L Sbjct: 187 TIRELQRFDWRREGPVVVGTVIADAFCWSMVRSLVGAVASVGDGRRSLGW-CTDL---LD 242 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 + R P+A GL V+Y Sbjct: 243 QRARSAQVPVAQARGLSLIGVDY 265 >gi|229829433|ref|ZP_04455502.1| hypothetical protein GCWU000342_01523 [Shuttleworthia satelles DSM 14600] gi|229791864|gb|EEP27978.1| hypothetical protein GCWU000342_01523 [Shuttleworthia satelles DSM 14600] Length = 325 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 123/299 (41%), Gaps = 52/299 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI------------FLVTGEIVVVHGA 48 M Y + I Y+G+ Y GW+ Q +IQG +E+A+ F+ V + GA Sbjct: 27 MQNYRLKIAYDGTRYAGWEHQPGQETIQGKLEQALARMCGLAMDERDFMRPDTPVKLIGA 86 Query: 49 GRTDSGVHALRQVAHF-------------------------------------DLVREWV 71 GRTD+GVHA VA L R Sbjct: 87 GRTDAGVHARGMVASIAFEAPAYRPGPWERRESKGRDRGNQPGNMTWQAEPSAQLTRRNQ 146 Query: 72 P-VILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 P + C+ + YL + D IS++ +FHAR+ A+ ++Y Y + + Sbjct: 147 PRSMTCQEMQDYLNHYLPDDISVVAFKEAAARFHARYKAVGKTYQYTAFDGRVKPVFNRR 206 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 + + LD M+ AA L+G HDF +F S +R +D ++ + Sbjct: 207 YYTPLEEELDVSAMQEAANCLLGEHDFRSFCGNPKMKKSTVRRVDRIEIRRSKGYVYFSF 266 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL +R VG+L VG + D+EK L+A+DRK GP AP GL V+Y Sbjct: 267 HGTGFLQNMVRILVGTLMEVGWHRMRPQDVEKILEARDRKAAGPTAPARGLCLIRVDYD 325 >gi|70725835|ref|YP_252749.1| tRNA pseudouridine synthase A [Staphylococcus haemolyticus JCSC1435] gi|123735013|sp|Q4L882|TRUA_STAHJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|68446559|dbj|BAE04143.1| tRNA pseudouridine synthase A [Staphylococcus haemolyticus JCSC1435] Length = 267 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNISYQGSQFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L D I + + VD FH R+ + + Y Y++ Sbjct: 61 FHFDTDLNIEPKQWKYAMNSAL--PDDIYVKEVQQVDDHFHCRYDCLGKRYRYKVYQATH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I + L+ M AA+H +G HDFT F S + S +RT+ ++ Sbjct: 119 RNPFESGLKTFIKEDLNYSKMNEAAKHFIGTHDFTGFCSQKTEVESKVRTLYQSEIIQTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++++ L ++R AP EGLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRHASEVSTLLNEKNRDSVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|317501544|ref|ZP_07959740.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088594|ref|ZP_08337505.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] gi|316897055|gb|EFV19130.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407551|gb|EGG87051.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] Length = 260 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 120/262 (45%), Gaps = 17/262 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ + +IQG +E+ + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + + +N L I IL++ +V FHAR SA+ + Y YRI T Sbjct: 61 QTASVVLPGKVDTALFTEKMNGCLPPD--IRILDVELVKNGFHARKSAVGKVYEYRIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----------RSIHC----QA 165 + + P D MR AA +L G H F + R+I+ Sbjct: 119 IKQDVFTRKYSGHFPGEPDLARMREAAGYLTGTHFFAGYTDKKDNRSVRRTIYSIMIRDE 178 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 D GN I IR FL+ +R G+L VG + T+ +++AL Sbjct: 179 RKDFLPCGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLTG 238 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DR + G LAP GL+ V Y Sbjct: 239 DRSKAGFLAPAGGLFLREVRYE 260 >gi|224373193|ref|YP_002607565.1| tRNA pseudouridine synthase A [Nautilia profundicola AmH] gi|223588941|gb|ACM92677.1| tRNA pseudouridine synthase A [Nautilia profundicola AmH] Length = 223 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 107/228 (46%), Gaps = 6/228 (2%) Query: 19 QRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA 78 Q+Q + ++QGSIE A+ + V+H AGRTD GVHAL QV F L W L Sbjct: 2 QKQPDKITVQGSIENALKRLNINSDVLH-AGRTDRGVHALNQVVSFKLPSFWNQNKLLTE 60 Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 LN L I I V+ F+ RF A +RSY Y + P + + P ++ Sbjct: 61 LNKIL--HPNIHIKKFYNVNDDFNPRFDAKKRSYRYILNPNFNPFSANYTTYY--PHKIN 116 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 ++ A + G HDF F ++ IR I DV + N I++V FL QI Sbjct: 117 ISLLKKALKEFEGIHDFEYFAKTGSDVNNYIREIYKTDVYKYKNFTVIKIVGNGFLRAQI 176 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R V + + + K T DL+K L Q+ LAPP GLY D + Y Sbjct: 177 RLIVDFVLKINENKLTVQDLQKQLSKQEL-ISKHLAPPNGLYLDRIWY 223 >gi|305680135|ref|ZP_07402945.1| tRNA pseudouridine synthase A [Corynebacterium matruchotii ATCC 14266] gi|305660755|gb|EFM50252.1| tRNA pseudouridine synthase A [Corynebacterium matruchotii ATCC 14266] Length = 290 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 118/259 (45%), Gaps = 15/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 IR + + Y+G+ + GW RQ + ++Q +E A+ LV + + + AGRTD+GVHA Sbjct: 4 IRIRLDLAYDGTHFHGWARQGHSELRTVQQVLEDALTLVLRQPIALTVAGRTDAGVHAAA 63 Query: 60 QVAHFDL------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 QVAHFD+ R + + + +I F ARFSA+RR Y+ Sbjct: 64 QVAHFDVPAAALDTRSIAGDPGRLVRRLARLLPTDVRVHAATIAPPDFDARFSALRRHYV 123 Query: 114 YRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T + L PK +D M+ A L+G HDF F H ++ IR + Sbjct: 124 YRLTTHPRGALPTRVTDTAHHPKPVDLAAMQACAAELIGLHDFAAF-CRHRDGATTIRDL 182 Query: 173 DHFDVNSFGNLI-----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F N I E V A +F + +RS VG +VG+GK + L R Sbjct: 183 QEFTWNDISTPIEPDTFEAHVTADAFCWSMVRSLVGCCLVVGEGKRPAGFATSLLAETSR 242 Query: 228 KECGPLAPPEGLYFDSVEY 246 P+AP GL V+Y Sbjct: 243 SALVPVAPAAGLSLVGVDY 261 >gi|260188510|ref|ZP_05765984.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CPHL_A] gi|289449159|ref|ZP_06438903.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CPHL_A] gi|289422117|gb|EFD19318.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CPHL_A] Length = 256 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 22/238 (9%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP------------- 72 ++ G ++ A+ + V + AGRTD+GVHA QVAH D+ + +P Sbjct: 5 TVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPE 64 Query: 73 -VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + L + L +L + IL+++ F ARFSA+RR Y+YR+ T AP +E +A Sbjct: 65 FLPLLRRLGRFLPAD--VRILDITRAPAGFDARFSALRRHYVYRLST--APYGVEPQQAR 120 Query: 132 LI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 I P+ LD + M A++ L+G HDF F H + ++ IR + D + G+L+ V Sbjct: 121 YITAWPRELDLDAMTAASRDLMGLHDFAAF-CRHREGATTIRDLQRLDWSRAGSLVTAHV 179 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A +F + +RS VG+L VG+ + +T + L A R +AP GL V+Y Sbjct: 180 TADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDY 237 >gi|210631184|ref|ZP_03296795.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279] gi|210160151|gb|EEA91122.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279] Length = 281 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 6/243 (2%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+G+G+ G+ Q + ++ G +A+ + + AGRTD+GVHA+ Q RE Sbjct: 30 YDGAGFSGFAEQPDVRTVAGEARRALETFLRRPIDMTCAGRTDAGVHAISQYVSVPAHRE 89 Query: 70 WVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + + + + A + D I++ + F ARF A R+Y YRI T A L + Sbjct: 90 ELAIEHRRWMRAMAALLPDDIALSGVYHAAPGFSARFDARSRTYTYRIATGDARPLLTRN 149 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDVNSFG-NL 183 W LD E M A HLVG HDF +F + P + ++ + G + Sbjct: 150 VTWWHRLPLDVEAMEAGAVHLVGEHDFKSFCKMSSAVGKPTCRNVISVSFAREQALGEDH 209 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + +FLH+ +R+ VG+L VG G+ + + L A DR+ GP AP GL F Sbjct: 210 LAFTITGNAFLHSMVRTIVGTLVEVGAGRRDPAWVVEVLAACDRRAAGPTAPARGLCFMD 269 Query: 244 VEY 246 V Y Sbjct: 270 VAY 272 >gi|78211903|ref|YP_380682.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9605] gi|123743387|sp|Q3AMQ5|TRUA_SYNSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78196362|gb|ABB34127.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9605] Length = 293 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 115/246 (46%), Gaps = 14/246 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 + R + ++Y+GS + GWQRQ+NG S+Q +E AI L V AGRTD+GVHA Sbjct: 15 LQRIALSLQYDGSSFCGWQRQRNGRSVQAVLEDAIAQLDPHRPVQTFAAGRTDAGVHAAG 74 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD R+W P ALN ++ TI + +HA +SA R Y Y Sbjct: 75 QVVHFDCSGPIPARKWAP-----ALNG--RLPSTIRVRESVARPLDWHACYSATYRRYRY 127 Query: 115 RIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 I + P +W LD MR A ++G HDF+ F + + T+ Sbjct: 128 TIHNGRRPNLFLSPWSWHCYQHRLDESRMRDALSSMLGLHDFSAFMKAGSRRAHARTTVQ 187 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V G+L+ + + A FL+ +R + L VG+ + + E+ + + R E Sbjct: 188 EVLVERQGDLLRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVAAFEQRWRERRRHEVKEA 247 Query: 234 APPEGL 239 AP GL Sbjct: 248 APAAGL 253 >gi|223042638|ref|ZP_03612687.1| tRNA pseudouridine synthase A [Staphylococcus capitis SK14] gi|222444301|gb|EEE50397.1| tRNA pseudouridine synthase A [Staphylococcus capitis SK14] Length = 267 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L D I + N+ V++ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PDDIYVKNVQTVEENFHCRYDCVGKRYRYKVYQGEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RNPFKSGLETFINSDLDLSKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 TGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRQPDEVPQLLEEKNRNNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|218135248|ref|ZP_03464052.1| hypothetical protein BACPEC_03153 [Bacteroides pectinophilus ATCC 43243] gi|217990633|gb|EEC56644.1| hypothetical protein BACPEC_03153 [Bacteroides pectinophilus ATCC 43243] Length = 196 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 2/177 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q N +I+G + A+ + GE + V GA RTD+GVHAL Sbjct: 1 MRRIKLIVAYDGTKYSGWQVQNNADTIEGRLNAALSSICGENIRVIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD ALNA ++ + I + V +H R + ++Y Y I+ R Sbjct: 61 IAVFDTESRIPAEKFAYALNA--RLPEDIVVQKSCEVPPDYHPRHCSTIKTYEYHILNRT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + + +LD E M AAQ+L+G HDF +F S++ QA + +RTI +V Sbjct: 119 FRLPQMRNNTFFCHYALDLETMNEAAQYLLGEHDFKSFCSVNTQAETTVRTIYSIEV 175 >gi|121639375|ref|YP_979599.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663320|ref|YP_001284843.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] gi|215405494|ref|ZP_03417675.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 02_1987] gi|215413368|ref|ZP_03422053.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|215428962|ref|ZP_03426881.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T92] gi|215432426|ref|ZP_03430345.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis EAS054] gi|215447792|ref|ZP_03434544.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T85] gi|218755231|ref|ZP_03534027.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis GM 1503] gi|219559524|ref|ZP_03538600.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T17] gi|224991871|ref|YP_002646560.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo 172] gi|254552559|ref|ZP_05143006.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260202637|ref|ZP_05770128.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|260206826|ref|ZP_05774317.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis K85] gi|289445055|ref|ZP_06434799.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|289571689|ref|ZP_06451916.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17] gi|289576191|ref|ZP_06456418.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85] gi|289752179|ref|ZP_06511557.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92] gi|289755588|ref|ZP_06514966.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis EAS054] gi|289759618|ref|ZP_06518996.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85] gi|289763637|ref|ZP_06523015.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM 1503] gi|297636114|ref|ZP_06953894.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 4207] gi|297733114|ref|ZP_06962232.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN R506] gi|306777802|ref|ZP_07416139.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu001] gi|306782521|ref|ZP_07420858.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu002] gi|306809459|ref|ZP_07446127.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu007] gi|313660445|ref|ZP_07817325.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN V2475] gi|2104378|emb|CAB08721.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE) [Mycobacterium tuberculosis H37Rv] gi|31620228|emb|CAD95671.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE) [Mycobacterium bovis AF2122/97] gi|121495023|emb|CAL73509.1| Probable tRNA pseudouridine synthase A truA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148507472|gb|ABQ75281.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] gi|224774986|dbj|BAH27792.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo 172] gi|289417974|gb|EFD15214.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|289540622|gb|EFD45200.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85] gi|289545443|gb|EFD49091.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17] gi|289692766|gb|EFD60195.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92] gi|289696175|gb|EFD63604.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis EAS054] gi|289711143|gb|EFD75159.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM 1503] gi|289715182|gb|EFD79194.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85] gi|308213887|gb|EFO73286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu001] gi|308324838|gb|EFP13689.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu002] gi|308344299|gb|EFP33150.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu007] gi|326905301|gb|EGE52234.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis W-148] Length = 256 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 22/238 (9%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP------------- 72 ++ G ++ A+ + V + AGRTD+GVHA QVAH D+ + +P Sbjct: 5 TVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPE 64 Query: 73 -VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + L + L +L + IL+++ F ARFSA+RR Y+YR+ T AP +E +A Sbjct: 65 FLPLLRRLGRFLPAD--VRILDITRAPAGFDARFSALRRHYVYRLST--APYGVEPQQAR 120 Query: 132 LI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 I P+ LD + M A++ L+G HDF F H + ++ IR + D + G L+ V Sbjct: 121 YITAWPRELDLDAMTAASRDLMGLHDFAAF-CRHREGATTIRDLQRLDWSRAGTLVTAHV 179 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A +F + +RS VG+L VG+ + +T + L A R +AP GL V+Y Sbjct: 180 TADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDY 237 >gi|296394888|ref|YP_003659772.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985] gi|296182035|gb|ADG98941.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985] Length = 278 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 122/254 (48%), Gaps = 15/254 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW RQ ++ G IE+A+ + + AGRTD+GVHA QV Sbjct: 9 LRLRLDVAYDGTEFSGWARQPGRRTVAGVIEEALSTLLQSSAQLTVAGRTDAGVHATGQV 68 Query: 62 AHFDLVREWV-----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AH D+ + V P L + L L + +L+ V QF ARFSA+RR Y Y Sbjct: 69 AHVDVRADLVSGRLPPEKLVRKLARMLPTD--VRVLSAQKVSAQFDARFSALRRHYRYH- 125 Query: 117 ITRQA----PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 ITR PL + W P LD + + A+ LVG HDF F A++ IR + Sbjct: 126 ITRSVYGADPLRAREVVPWARP--LDFDVLNAASSALVGLHDFAAFCRPRPGATT-IREL 182 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 F+ G LI + A +F + RS VG++ V +G+ + L A R Sbjct: 183 QRFEWAESGVLITASITADAFCWSMCRSLVGAVTAVAEGRRDLAWIRSLLTASSRASEIT 242 Query: 233 LAPPEGLYFDSVEY 246 +AP GL V+Y Sbjct: 243 VAPAHGLCLVGVDY 256 >gi|325297315|ref|YP_004257232.1| tRNA pseudouridine synthase A [Bacteroides salanitronis DSM 18170] gi|324316868|gb|ADY34759.1| tRNA pseudouridine synthase A [Bacteroides salanitronis DSM 18170] Length = 268 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 117/247 (47%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M + Y+G+ Y GWQ Q NG+S+Q ++KA+ + V V GAGRTD+GVHA Sbjct: 1 MARYFMYLGYDGTNYHGWQIQPNGASVQEELQKALSTLMRRPVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ I LN L I++ + V HARF A R Y Y + T + Sbjct: 61 VAHADIDALADAAIWVGKLNRLL--PPDIAVYRMRRVADDAHARFDATYRKYQYHVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW + + LD M AA L DFT+F +H + I + Sbjct: 119 NPFL--RHYAWRVFQPLDFGRMNEAASVLFEYTDFTSFSKLHTDVKTNNCRILYARWEQT 176 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + A FL +R+ VG+L VG GK T + ++A++R G P L Sbjct: 177 GADEWVFTIQADRFLRNMVRAVVGTLVEVGRGKLTIEGFRRVIEAKNRCSAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVGY 243 >gi|296206475|ref|XP_002750239.1| PREDICTED: tRNA pseudouridine synthase-like 1-like, partial [Callithrix jacchus] Length = 301 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 132/273 (48%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHAL 58 RY + ++Y G+ + G + +Q +E+A L + E V + RTD+GVHAL Sbjct: 11 RYLVYLQYVGTDFNGVAAVRGAQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 70 Query: 59 RQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR +A R+YL Sbjct: 71 SNAAHLDVQRRSGRPPFPPEVLTEALNTHLR-HPAIRVLRAFRVPSDFHARHAATSRTYL 129 Query: 114 YRIIT---RQAPLAL-EKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR++T R L + E+ W L LD M+ AAQHL+G HDF+ F+S SP Sbjct: 130 YRLVTGCHRSDELPVFERNLCWALRADRLDVAAMQEAAQHLLGTHDFSAFQSAGSPVPSP 189 Query: 169 IRTIDHFDVNS--FGNLI-----------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V+ L+ + ++SFL+ Q+R L VG G Sbjct: 190 VRTLRRVSVSPGLTSPLVTPQESRKLQFWSLEFESQSFLYRQVRRMTAVLVAVGLGALAP 249 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K LAP GL+ SV Y Sbjct: 250 AQVKTILESQDPLGKHQTRLAPAHGLFLKSVVY 282 >gi|297568336|ref|YP_003689680.1| tRNA pseudouridine synthase A [Desulfurivibrio alkaliphilus AHT2] gi|296924251|gb|ADH85061.1| tRNA pseudouridine synthase A [Desulfurivibrio alkaliphilus AHT2] Length = 252 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 116/256 (45%), Gaps = 14/256 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ + I Y+G+ + GWQRQ N +IQ +E+A+ + GE VV+HGAGRTD+GVHAL Sbjct: 1 MVKVKLTIAYDGTDFAGWQRQLNRPTIQAVVEEALARMLGEQVVLHGAGRTDAGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F+ R LN+ L I I+ FHARFSA + Y Y T Sbjct: 61 VASFNAPRRLPLAAYRLGLNSML--PPAIRIMAADEAADDFHARFSAKGKLYRYCFSTAA 118 Query: 121 A-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---------QASSPIR 170 P RA L P E +R ++G HDF+TF + + Sbjct: 119 VMPPCRRLYRAHL-PGPFAAERVRQLLPQMLGEHDFSTFEAAGSRDRDRAGGRGGVRRLN 177 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + + G + FL +R+ VG+L +G G+ + + L +DR Sbjct: 178 LLQLEQEDPAGQEFCFELGGDGFLRHMVRNIVGTLVAIGQGRPLAEPV-ALLVGRDRARA 236 Query: 231 GPLAPPEGLYFDSVEY 246 GP AP GL V Y Sbjct: 237 GPTAPACGLTLVKVIY 252 >gi|297201758|ref|ZP_06919155.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083] gi|197710867|gb|EDY54901.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083] Length = 289 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 125/254 (49%), Gaps = 12/254 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHA 57 +R + + Y+GS + GW +Q G ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSDFSGWAKQAGGRRTVQGEIEDALRTVTRSKDVTYELTVAGRTDAGVHA 69 Query: 58 LRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QVAH DL W L K L ++ + + +L F+ARF+A+ R Y+Y Sbjct: 70 RGQVAHVDLPEGLWAEHRDKLLKRLAG--RLPKDVRVWSLREAPAGFNARFAALWRRYVY 127 Query: 115 RIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R+ + + L + LD M AA+ LVG HDF + + + ++ IR I Sbjct: 128 RVGDQPGGVDPLLRNHVLWHDWELDVAVMDAAAKSLVGEHDFAAY-AKRREGATTIREIL 186 Query: 174 HFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 F V + ++EI V A +F H Q+RS VG+L VGDG K L A R Sbjct: 187 DFGVRRRADGVVEIEVRADAFCHNQVRSMVGALLFVGDGHRGVEWPRKVLDAGVRDSAVH 246 Query: 233 LAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 247 VVRPHGLTLEEVAY 260 >gi|314934267|ref|ZP_07841626.1| tRNA pseudouridine synthase A [Staphylococcus caprae C87] gi|313652197|gb|EFS15960.1| tRNA pseudouridine synthase A [Staphylococcus caprae C87] Length = 267 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L D I + N+ V++ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PDDIYVKNVHTVEENFHCRYDCVGKRYRYKVYQGEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RNPFKSGLETFINSDLDLSKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 TGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRQPDEVPQLLEEKNRNNVPFTAPAEGLYL 238 Query: 242 DSV 244 + + Sbjct: 239 EKI 241 >gi|124026684|ref|YP_001015799.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL1A] gi|123961752|gb|ABM76535.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL1A] Length = 276 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 118/251 (47%), Gaps = 14/251 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y+G G+ GWQ QK+ ++QG++E+ I L V AGRTDSGVHA QV Sbjct: 4 RIALVIQYDGLGFRGWQNQKDSITVQGTLEEKIAELDPIRPVKAIAAGRTDSGVHASGQV 63 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD + +W ALN L S I +L V +HA +SA R Y Y I Sbjct: 64 VHFDCSGPIPIHKW-----ASALNGRLPAS--IKVLEAVSVPSAWHACYSAKYRRYRYSI 116 Query: 117 ITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P + +W + LD M+ A L+G HDF F+ S+ + T+ Sbjct: 117 FNGSYPNLFLQNISWHKYRFKLDINLMKQALNDLLGLHDFAAFQKAGSNRSNSLTTVQDV 176 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ G+++ + + A FL+ +R +G L VG+ + + + R E AP Sbjct: 177 SISRDGDIVTVEIQASGFLYGMVRLLMGQLVAVGEKRLSLEKFRYRWRKGLRSEVKEAAP 236 Query: 236 PEGLYFDSVEY 246 GL V Y Sbjct: 237 AHGLCLIRVGY 247 >gi|302524024|ref|ZP_07276366.1| tRNA pseudouridine synthase A [Streptomyces sp. AA4] gi|302432919|gb|EFL04735.1| tRNA pseudouridine synthase A [Streptomyces sp. AA4] Length = 298 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 131/268 (48%), Gaps = 29/268 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVV--VHGAGRTDSGVHA 57 ++R + + Y+G+ + GW RQ ++Q +E+A+ GE V V AGRTD+GVHA Sbjct: 16 LVRLRLDVSYDGTDFSGWARQPGRRTVQAELEQALQRQPPGEAVPKSVVVAGRTDAGVHA 75 Query: 58 LRQVAHFDLVR------EWVPVI------LCKALNAYLKI-SDTISILNLSIVDKQFHAR 104 QV H D+V +PV L + + K+ + +LN + F AR Sbjct: 76 TGQVVHVDVVPFAPGAPGRIPVDERGIPDLTRMRGRWNKLLPADVRVLNARVAPDGFDAR 135 Query: 105 FSAIRRSYLYRIITRQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 FSAIRR Y YR+ AP ++ R AW P L E M AA L+G DF + Sbjct: 136 FSAIRRHYRYRV--SDAPWGVDPLRRNDTLAWGRP--LSTERMNAAAAELLGLQDFAAY- 190 Query: 160 SIHCQASSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + + IR + + +L+E+RV A +F H+ +RS VG L LVGDG+ + Sbjct: 191 CKQREGGTTIRELQRLEWTRIDEHLLEVRVSADAFCHSMVRSLVGVLLLVGDGRRGTGWP 250 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L + R +AP GL +V+Y Sbjct: 251 GEVLASGTRDSA--VAPAHGLTLTAVDY 276 >gi|326792524|ref|YP_004310345.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326543288|gb|ADZ85147.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 245 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + ++I+Y+GS Y G+Q Q++ ++Q IE + +T E V + G RTD GVHA Sbjct: 1 MRNFKIVIQYDGSRYKGFQLQRDTDLTVQAKIEAVLEKMTEEQVEIIGCDRTDVGVHAEN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F E C Y + + I + ++ VD++FHAR++ ++Y Y I Sbjct: 61 YVASFKT--ECTLSTACMLDYLYEFLPEDIVVKSIEEVDERFHARYNVKAKTYEYTINCG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ D ++M A G HDF +F S+ S ++TI+ ++ Sbjct: 119 AQRNVFNRKYVHHMSENFDLKSMNEVAAVFKGTHDFQSFTSLKPNGKSTMQTINEIEIIQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++++IRV A FL R +G++ G G T+ ++ + + R P+A P+ L Sbjct: 179 KGDILQIRVTADDFLLHMPRMIIGAIVEAGKGTITAQQTQEVMDKKQRATGYPMAKPKAL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 SLVEVKY 245 >gi|260062032|ref|YP_003195112.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] gi|88783594|gb|EAR14765.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] Length = 253 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 126/258 (48%), Gaps = 30/258 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALR 59 +R+ + I Y G+ Y GWQ+Q N +IQ +E + L G I +V GAGRTD+GVHA + Sbjct: 1 MRFFLEISYLGTAYHGWQKQPNALAIQEILEDRMGKLLGNGPIDLV-GAGRTDAGVHARQ 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD +P LNA+L I++ + V HARF A R+Y Y ++ Sbjct: 60 LFAHFDR-DAALPSGFVHRLNAFLPAD--IAVKGVYEVAPNAHARFDATGRTYEYHLVRE 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P +G A+ LD M AA ++G +F F ++ S ++T + Sbjct: 117 KDPF--REGLAYQFQGELDFGAMNRAAASMLGYGNFKAF----SRSKSDVKTYNC----- 165 Query: 180 FGNLIEIR-----------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 +L E R + A FL +R+ VG+L VG G+ + ++ +++QDR Sbjct: 166 --DLREARWEEGDGVWVFTISADRFLRNMVRAVVGTLLEVGKGRLDAEGVKTIIKSQDRS 223 Query: 229 ECGPLAPPEGLYFDSVEY 246 E G P +GLY + Y Sbjct: 224 EAGVSVPAKGLYLTRITY 241 >gi|324999254|ref|ZP_08120366.1| tRNA pseudouridine synthase a [Pseudonocardia sp. P1] Length = 268 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 21/251 (8%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + GW Q ++QG + A+ V + + AGRTD+GVHA QVAH D+ Sbjct: 5 IAYDGTDFSGWATQPTRRTVQGVLTDALSTVLRTPLRLTVAGRTDAGVHASGQVAHVDVP 64 Query: 68 REWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ---AP 122 E P + L + LN +L + + + V + F ARFSA+RR Y YR+ T P Sbjct: 65 AELDPQLDGLLRRLNRFLPPD--VRVRATTRVPETFDARFSALRRHYRYRVTTASFGAEP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-- 180 L + AW P LD M A+ +VG HDF F + ++ +R + F+ + Sbjct: 123 LRARETVAW--PHPLDPALMNAASALMVGEHDFAAF-CKRREGATTVRALQRFEWDPAPG 179 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVG----DGKWTSTDLEKALQAQDRKECGPLAP 235 ++ V A +F H+ +RS VG++ VG +W + L + +A + +AP Sbjct: 180 EPGVLVASVSADAFCHSMVRSLVGAVFEVGRVHRPPEWPAELLSRTSRASEVT----VAP 235 Query: 236 PEGLYFDSVEY 246 P GL V+Y Sbjct: 236 PHGLSLTGVDY 246 >gi|260579203|ref|ZP_05847093.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium ATCC 43734] gi|258602689|gb|EEW15976.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium ATCC 43734] Length = 328 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 131/265 (49%), Gaps = 27/265 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 ++R + + Y+G+ + GW Q G ++ G +++ + LVT + + AGRTD+GVHA Sbjct: 28 LVRVRLEVAYDGTDFHGWATQSGGLRTVAGVLQEKLSLVTRHPIELVVAGRTDAGVHASG 87 Query: 60 QVAHFDLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 QV H D+ + P L + L+ L SD + + S+ + F ARFSA+RR Y Sbjct: 88 QVCHADIPADAFEQRSLTRPEDLVRRLSRMLP-SD-VRLHGASVAPQGFDARFSALRRHY 145 Query: 113 LYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---S 166 +YR+ T A P+ AW P +D E + A+ L+G +DF F C+A + Sbjct: 146 IYRVTTHPAGPVPVRARDTAAWRHP--IDLEKTQAASDALIGLNDFAAF----CKAREGA 199 Query: 167 SPIRTIDHF---DVNSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + +R + F DV++ E V A +F + +RS VG+ VG GK Sbjct: 200 TTVRELQEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGSGKRPDDFTPGL 259 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 L+ R P+AP EGL V+Y Sbjct: 260 LKETKRSSAVPVAPAEGLNLVRVDY 284 >gi|288919692|ref|ZP_06414019.1| tRNA pseudouridine synthase A [Frankia sp. EUN1f] gi|288348881|gb|EFC83131.1| tRNA pseudouridine synthase A [Frankia sp. EUN1f] Length = 275 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 122/249 (48%), Gaps = 23/249 (9%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVR 68 Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA+ QVAH DL Sbjct: 16 YDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAIGQVAHVDLPT 75 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 L + LN L + + + L+ F ARFSA+ R Y+YRI AP E Sbjct: 76 GTPVGGLARRLNGVLDRA--VRVKGLAPAPAGFDARFSALSRRYVYRIT--DAPFGAEPL 131 Query: 129 RAW---LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHFDVNSFGN 182 R + P+ LD M AA L+G HDF F C + ++ +RT+ DV+ Sbjct: 132 RRFDTLASPRPLDVPAMAEAALLLLGEHDFAAF----CRRREGATTVRTLLRLDVSRVEG 187 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEG 238 +I V A +F H+ +R+ VG+L VG+G+ W + L + + R + P G Sbjct: 188 VILADVEADAFCHSMVRALVGALVAVGEGRRRPEWAAAVLGRGV----RDSGVTVLPAHG 243 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 244 LTLVEVRYP 252 >gi|328884456|emb|CCA57695.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712] Length = 285 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 121/251 (48%), Gaps = 7/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW +Q G ++QG IE A+ VT E + AGRTDSGVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQAQGQRTVQGDIEDALRTVTRSKETYELTVAGRTDSGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL E K L ++S + + +L+ F+ARFSAI R Y YR+ Sbjct: 70 GQVAHVDLPAELWAEHRDKLLRRLAGRLSHDVRVWSLAEAPSGFNARFSAIWRRYAYRVT 129 Query: 118 TRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G +LD + M AA LVG HDF + + ++ IRT+ Sbjct: 130 DNPGGVDPLLRGHVLWHDWALDMDAMNEAAAALVGEHDFAAY-CKRREGATTIRTLQELR 188 Query: 177 VNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + ++E V A +F H +RS VG+L VGDG K L A R + Sbjct: 189 WERRPDGVLEATVKADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEY 246 P GL + V Y Sbjct: 249 PHGLTLEEVGY 259 >gi|330998477|ref|ZP_08322301.1| tRNA pseudouridine synthase A [Paraprevotella xylaniphila YIT 11841] gi|329568583|gb|EGG50388.1| tRNA pseudouridine synthase A [Paraprevotella xylaniphila YIT 11841] Length = 256 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 116/253 (45%), Gaps = 11/253 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q ++KA+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFLYLAYDGTSYHGWQIQPNGISVQEVLQKALATLLRQPVSITGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPV------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD PV L LN L ISI V HARF A+ R+Y Y Sbjct: 61 VAHFDFEYADDPVRRIDGRWLTDKLNRLLPPD--ISIYKTVPVAADAHARFDALSRTYHY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTID 173 + ++P + + + + LD M AA L DFT+F ++ ++ R + Sbjct: 119 YLHFGKSPFL--RAYSCRLYQMLDFGKMNEAAAALFDYTDFTSFSKVNTDTKTNNCRIMQ 176 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + A FL +R+ VG+L VG GK T ++ +DR G Sbjct: 177 ARWTELAPGEWRFEIQADRFLRNMVRAIVGTLVEVGRGKLTPEGFRAVIEGKDRCRAGES 236 Query: 234 APPEGLYFDSVEY 246 P L+ V Y Sbjct: 237 MPGNALFLVDVAY 249 >gi|169830000|ref|YP_001700158.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41] gi|238688163|sp|B1HMV0|TRUA_LYSSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168994488|gb|ACA42028.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41] Length = 246 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q IE+ + ++ E V V +GRTD+ VHA Sbjct: 1 MRRLKIIISYDGTHFSGYQVQPGERTVQAEIERVLAIMHKEEKVKVTASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN +++ I +L++ V FHAR+S + Y Y I Sbjct: 61 QTLHFDTPLAIPTDKYRKALN--VQLPRDIRVLSVEEVAHDFHARYSVTGKRYRY--IWS 116 Query: 120 QAPLALEKGRAWLIPKS---LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P+ R + + + D M+ AAQ ++G HDF+ F + + +RT+ Sbjct: 117 CEPIQNPFRRHYTVDTNGVKPDVVAMQKAAQAIIGTHDFSCFCAANTSVQDKVRTVTSLQ 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + + + FL+ +R G+L VG + T ++ + ++DR + G APP Sbjct: 177 FEWHGEELHMVIEGNGFLYNMVRIIAGTLWEVGIDRRTIENIALVVASEDRDKAGKTAPP 236 Query: 237 EGLYFDSVEY 246 +GLY + V Y Sbjct: 237 QGLYLEKVFY 246 >gi|291457231|ref|ZP_06596621.1| tRNA pseudouridine synthase A [Bifidobacterium breve DSM 20213] gi|291381066|gb|EFE88584.1| tRNA pseudouridine synthase A [Bifidobacterium breve DSM 20213] Length = 303 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPELRTVQGTIEDALHKVLRVPVGDEREPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVREWVP-------VILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + V L +AL LK + I I ++I + F AR Sbjct: 61 GVHASHQVAHLDVSDETLARCQGHMDVPLTEALARRLKAVLPADIVIHGIAIAPQGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + + +G + +SLD + M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLRVDESLDLDAMNAAAAMTIGLHDFGSFATPNP 180 Query: 164 QASS------------PIRTI--------DHFDVNSF-GNLIEIRVVARSFLHTQIRSFV 202 ++ P+ ++ + + S L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPVASLVPDVLAENEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 GS VG G+ T + R+ GP+A P+GL + +EY Sbjct: 241 GSSIKVGSGRKTLEWFADKMANPVREGSSGPIA-PQGLTLEHIEY 284 >gi|319950123|ref|ZP_08024062.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4] gi|319436208|gb|EFV91389.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4] Length = 380 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 127/268 (47%), Gaps = 31/268 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW RQ ++ G +E + V VV+ AGRTD+GVHA QV Sbjct: 5 RIRLDVAYDGTDFSGWARQPGLRTVCGVLEAELSTVLRHPVVLTVAGRTDAGVHARAQVC 64 Query: 63 HFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 H D+ W+ P L + L L I++++ V +F ARFSA+RR Y Y Sbjct: 65 HLDVDPAWLDQRSLDGRPEALVRRLARLLPAD--IAVMDGRWVPDEFDARFSALRRHYEY 122 Query: 115 RIITRQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R+ T AP E R AW ++ D E +R A++ L+G HDF F + ++ I Sbjct: 123 RLTT--APWGAEPIRARDTAAWT--RTADLEAVRAASERLLGLHDFAAF-CRRREGATTI 177 Query: 170 RTIDHF-----------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 R + F D + V A +F + +RS VG++ VG+G+ + + Sbjct: 178 RELQRFEWRTEPDPRGPDAPGAAEVWTASVSADAFCWSMVRSLVGAVMAVGEGRRSLEWI 237 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 L +R P+AP GL V+Y Sbjct: 238 SGLLAETERSSAVPVAPACGLSLIGVDY 265 >gi|227539074|ref|ZP_03969123.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33300] gi|227241078|gb|EEI91093.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33300] Length = 257 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 118/249 (47%), Gaps = 10/249 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + I Y G+ Y GWQ Q N S+Q + + + + + GAGRTD+GVHA + Sbjct: 7 RFFLEIAYQGTAYHGWQIQHNAVSVQEKLNDVLKTLLRKDIETIGAGRTDTGVHARQLFV 66 Query: 63 HFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD + E + P +LNA L I++ L V + HARF A RSY Y + + Sbjct: 67 HFDAIPEGLLLQPDKFVHSLNALL--PHDIAVYRLLPVVDEAHARFDATSRSYEYHLHFK 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + P + +WL D M A Q+L+GR DF F + Q + I + Sbjct: 125 KDPFLIHA--SWLTRDIPDVAKMNEACQYLLGRQDFECFSKSNTQVFTNFCDISRAEWLW 182 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N+ +L+ + A FL +R+ VG+L +G +++ + ++ R + G P Sbjct: 183 NTDDHLV-FHISADRFLRNMVRAIVGTLLEIGLKGKEPVYIQEVIASKSRSKAGTSVPAH 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLTEVVY 250 >gi|166032002|ref|ZP_02234831.1| hypothetical protein DORFOR_01704 [Dorea formicigenerans ATCC 27755] gi|166028455|gb|EDR47212.1| hypothetical protein DORFOR_01704 [Dorea formicigenerans ATCC 27755] Length = 310 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 13/247 (5%) Query: 6 MIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAG-RTDSGVHALRQV 61 + IEY+GS Y GW R ++ ++I I + +TGE + G RT+ GVHA QV Sbjct: 71 ITIEYDGSRYQGWTRLGKDESNNTISAKIIDVLGKMTGEKNIELNCGCRTEVGVHAYAQV 130 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + LN YL + I+I + V +FHA+ +A+ ++Y+YR+ Sbjct: 131 ANFKTSSNLSTKDIQHYLNRYLPMD--IAITEVEEVPDRFHAQLNAVSKTYVYRMTIMDV 188 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ + K+ D + M+ AA +G HDF F S ++ + R + +D++ +G Sbjct: 189 PSVFERKHTYHCFKTPDKKAMQQAALLFIGEHDFRNF-STAKKSKNTTREV--YDIDIYG 245 Query: 182 NLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + E++++ A FLH R +G+L +G G D+E + K G P+GL Sbjct: 246 DNEEMQILIQADDFLHNMARLMIGTLLDIGFGLRKKEDIEAIFNGE--KAVGNPCDPKGL 303 Query: 240 YFDSVEY 246 Y VEY Sbjct: 304 YLQEVEY 310 >gi|284042832|ref|YP_003393172.1| tRNA pseudouridine synthase A [Conexibacter woesei DSM 14684] gi|283947053|gb|ADB49797.1| tRNA pseudouridine synthase A [Conexibacter woesei DSM 14684] Length = 261 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 8/243 (3%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQVAHF 64 + +EY+G + GW RQ +++ ++E+A+ V + V + AGRTD+GVHA Q A + Sbjct: 10 LTLEYDGRDFAGWARQPGRRTVEDALERALATVLRRDAVGLTVAGRTDAGVHAWAQEASY 69 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P LNA L D +++++ F AR A R+Y YR++ R++ A Sbjct: 70 E-----GPPAAPHRLNALLP--DDVAVIDARPAPPGFSARHDATSRAYRYRVLVRRSRSA 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 E+GRA P LD + + A L G HDFT F R + H + G+++ Sbjct: 123 HERGRALWWPHRLDRDALDACAAALAGTHDFTAFTPTETDHVRFQREVMHASWRADGDML 182 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + + A +F+ R VG++ V + + L R G APP GLY V Sbjct: 183 QFSIEADAFMRNMNRVLVGTMLEVAGERRSVEQFTALLDGAPRDRAGVTAPPHGLYLAGV 242 Query: 245 EYS 247 Y Sbjct: 243 GYD 245 >gi|113954813|ref|YP_729642.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9311] gi|113882164|gb|ABI47122.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9311] Length = 299 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 118/248 (47%), Gaps = 16/248 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHA 57 + R + ++Y GS + GWQRQ G S+Q +EKAI L + AGRTDSGVHA Sbjct: 17 LQRIAICLQYEGSFFCGWQRQTQGRGQSVQAVLEKAIAALDPHRPIKAIAAGRTDSGVHA 76 Query: 58 LRQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 QV HFD W P + + L A +++ + I LS +HA +SA R Y Sbjct: 77 SGQVVHFDCSGPIPASRWAPALNGR-LPACIRVREAIE-RPLS-----WHACYSASYRRY 129 Query: 113 LYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y I + P +W K LD + M A L+G HDF F+ + S T Sbjct: 130 RYTIYNGRRPNLFLAPWSWHRYHKRLDEQAMAQALAGLMGEHDFAAFQRAGSRRSHSRTT 189 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I ++ G+L+ + + A FL+ +R +G L VG+ + T E+ Q + R E Sbjct: 190 IQDVNIERDGDLLSVEIQASGFLYGMVRLLMGQLIAVGEHRLTPQQFEQRWQERRRDEVR 249 Query: 232 PLAPPEGL 239 APP GL Sbjct: 250 EAAPPHGL 257 >gi|68536845|ref|YP_251550.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium K411] gi|68264444|emb|CAI37932.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium K411] Length = 328 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 129/265 (48%), Gaps = 27/265 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 ++R + + Y+G+ + GW Q G ++ G +++ + LVT + + AGRTD+GVHA Sbjct: 28 LVRVRLEVAYDGTDFHGWATQSGGLRTVAGVLQEKLSLVTRHPIELVVAGRTDAGVHASG 87 Query: 60 QVAHFDLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 QV H D+ + P L + L+ L + + S+ + F ARFSA+RR Y Sbjct: 88 QVCHADIPVDAFEQRSLTRPEDLVRRLSRMLPAD--VRLHGASVAPQGFDARFSALRRHY 145 Query: 113 LYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---S 166 +YR+ T A P+ AW P +D E + A+ L+G +DF F C+A + Sbjct: 146 IYRVTTHPAGPVPVRARDTAAWRHP--IDLEKTQAASDALIGLNDFAAF----CKAREGA 199 Query: 167 SPIRTIDHF---DVNSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + +R + F DV++ E V A +F + +RS VG+ VG GK Sbjct: 200 TTVRELQEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGSGKRPDDFTPGL 259 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 L+ R P+AP EGL V+Y Sbjct: 260 LKETKRSSAVPVAPAEGLNLVRVDY 284 >gi|331699143|ref|YP_004335382.1| tRNA pseudouridine synthase A [Pseudonocardia dioxanivorans CB1190] gi|326953832|gb|AEA27529.1| tRNA pseudouridine synthase A [Pseudonocardia dioxanivorans CB1190] Length = 263 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 131/257 (50%), Gaps = 25/257 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y+G+ + GW Q ++ G + A+ + V + AGRTD+GVHA QV Sbjct: 1 MRYRLDIAYDGTDFSGWAPQPGRRTVHGVLTDALQRLVRAPVALTVAGRTDAGVHASGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 AH DL E P L + L L + + ++ V +F ARFSA+RR Y+YR+ T Sbjct: 61 AHVDLSGELEPDRLVRRLARLLPPD--VRVRAVTAVPPEFDARFSALRRHYVYRVTTAPW 118 Query: 121 --APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHF 175 PL AW P +D + + A+ L+G HDF F C + ++ IR + F Sbjct: 119 GADPLRARDTLAW--PHPIDLDAVARASTALLGEHDFAAF----CRRREGATTIRELLRF 172 Query: 176 --DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRKE 229 V++ G ++ + A +F H+ +RS VG++ VG G+ W + L++A +A D Sbjct: 173 AWSVDADG-VVRAELSADAFCHSMVRSLVGAMLDVGRGRRAVEWPAGLLDRAERASDVA- 230 Query: 230 CGPLAPPEGLYFDSVEY 246 +AP GL V+Y Sbjct: 231 ---VAPAHGLTLVGVDY 244 >gi|307328060|ref|ZP_07607241.1| tRNA pseudouridine synthase A [Streptomyces violaceusniger Tu 4113] gi|306886365|gb|EFN17370.1| tRNA pseudouridine synthase A [Streptomyces violaceusniger Tu 4113] Length = 288 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 116/251 (46%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW +Q+ ++QG +E A+ VT E + AGRTD+GVHA Sbjct: 9 FVRVRLDLSYDGKDFSGWAKQRERRTVQGELESALRTVTRSSETFELTVAGRTDAGVHAR 68 Query: 59 RQVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL W ++ + + ++ F+ARFSAI R Y YR+ Sbjct: 69 GQVAHVDLPEALWAEHRDRLLRRLAGRLPHDVRVWKVAQAPPGFNARFSAIWRRYAYRVT 128 Query: 118 TRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G LD M A++ L+G HDF + A++ IRT+ D Sbjct: 129 DHPGGVDPLLRGHVLWHDWPLDVAAMNAASERLLGEHDFAAYCKKRDGATT-IRTLQRLD 187 Query: 177 -VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V +I V A +F H +RS VG+L VGDG K L A R + Sbjct: 188 WVRGADGVITATVRADAFCHNMVRSLVGALLFVGDGHRPWDWPAKVLAAGVRDSAVHVVR 247 Query: 236 PEGLYFDSVEY 246 P GL + V Y Sbjct: 248 PHGLTLEEVGY 258 >gi|161723265|ref|NP_302320.2| tRNA pseudouridine synthase A [Mycobacterium leprae TN] Length = 320 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 127/268 (47%), Gaps = 34/268 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A V V + AGRTD+GVHA QV Sbjct: 44 VRLRLDIAYDGTDFAGWAVQAGQRTVAGVLDEAFTTVFRTPVRLRAAGRTDTGVHATGQV 103 Query: 62 AHFDLVREWVPVILCKALNAYLKISDT----------------ISILNLSIVDKQFHARF 105 AH D+ L KA D + +L+++ F ARF Sbjct: 104 AHVDIPG----TALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVRVLDIACAPVGFDARF 159 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 SA+RR Y YR+ T AP ++ +A + P+ LD ++M A++ L+G DF F H Sbjct: 160 SALRRHYRYRLST--APYGVQPNQARYVTAWPRELDLDSMSAASRDLLGLRDFAVF-CRH 216 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDL 218 ++ IR + + + G LI + A +F + +RS +G+L VGD + W L Sbjct: 217 RHGATTIRELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGDHRRTIGWCGELL 276 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 KA ++ D AP GL F V+Y Sbjct: 277 TKASRSSDFTT----APAHGLTFIRVDY 300 >gi|118443953|ref|YP_878363.1| tRNA pseudouridine synthase A [Clostridium novyi NT] gi|118134409|gb|ABK61453.1| tRNA pseudouridine synthase A [Clostridium novyi NT] Length = 245 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I+Y+G+ Y GWQ+ N ++IQ IE + + E V + +GRTD+GVHA QVA+F Sbjct: 6 LTIQYDGTRYKGWQKLGNNDNTIQHKIESVLGELLKEEVALIASGRTDAGVHANMQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + K L YL I + +++ + FH+R++ + Y YRI + Sbjct: 66 KTDSRISNDEISKYLYKYL--PQDIVVKSVNEASENFHSRYNVKEKVYTYRIHNSEVHDV 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + ++ + + LD + M+ A++ +G HDF +F ++ + S ++TI+ + I Sbjct: 124 FTRKYSYHVREKLDLKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTINSITFRKKEDDI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 EI FL+ IR VG+L VG K + D++ + +DR AP GL V Sbjct: 184 EIVFSGNGFLYKMIRILVGTLVEVGLNKISIDDVKDVMDKKDRSIAPETAPAHGLTLTEV 243 Query: 245 EY 246 +Y Sbjct: 244 KY 245 >gi|289547965|ref|YP_003472953.1| tRNA pseudouridine synthase A [Thermocrinis albus DSM 14484] gi|289181582|gb|ADC88826.1| tRNA pseudouridine synthase A [Thermocrinis albus DSM 14484] Length = 241 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +I+ + G+ + GWQ Q + ++QG + + + + G RTD+GVHA Sbjct: 1 MFNYGLILSFVGTHFHGWQIQPSLRTVQGELSSCLSKIFDRTIKPIGCCRTDAGVHAKEY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F P L KALN+ L I + + + ++++++R+S ++Y+YRI Sbjct: 61 AANFKAPTFIEPDKLLKALNSLL--PHDIGVKKVWLAEEKWNSRYSIKGKTYVYRIHMSH 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + W IP +L + MR +Q LVG HDF+ F S +PI ++ + Sbjct: 119 ARDPFLEPFVWRIPYTLQVDKMREISQLLVGTHDFSGF-SKKEDDKNPIIDLEELVLLQE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ + AR FL +R VG+L VG K ++E+ L ++ C AP +GL Sbjct: 178 GDILILSFRARRFLRYMVRRMVGALVQVGLEKIGKEEIERYLSGEN---CPYTAPAKGLT 234 Query: 241 FDSVEYS 247 + + +S Sbjct: 235 LEKIHFS 241 >gi|116624080|ref|YP_826236.1| tRNA pseudouridine synthase A [Candidatus Solibacter usitatus Ellin6076] gi|122253167|sp|Q01WL4|TRUA_SOLUE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116227242|gb|ABJ85951.1| tRNA pseudouridine synthase A [Candidatus Solibacter usitatus Ellin6076] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 122/250 (48%), Gaps = 14/250 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G + GWQ Q ++IQG +E+ + + G+ V V G+GRTD+GVHAL Q Sbjct: 1 MRRIRIYLAYDGGPFHGWQVQPGLATIQGILEEIVGGMEGKPVHVAGSGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F + +PV L +A+N L I IL V FH RF A+ ++Y YR+ Sbjct: 61 VAAFS-IENPIPVENLRRAVNRLL--PPAIRILCAEEVQADFHPRFDAVAKTYEYRMFRD 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFD 176 + E + P LD M A+ G HDFT F + + S +RTI Sbjct: 118 EVCSPFEWPYVYHHPYPLDEARMATLARAFEGEHDFTPFAASDARDAEGKSKVRTIFSST 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ + RV FL +R+ VG+L G G + +L A+ G AP Sbjct: 178 LDRTPQRLVYRVRGSGFLKHMVRNIVGTLIEAGRGNIADLN---SLPAR----SGATAPA 230 Query: 237 EGLYFDSVEY 246 +GL+ SVEY Sbjct: 231 KGLFQVSVEY 240 >gi|319956627|ref|YP_004167890.1| tRNA pseudouridine synthase a [Nitratifractor salsuginis DSM 16511] gi|319419031|gb|ADV46141.1| tRNA pseudouridine synthase A [Nitratifractor salsuginis DSM 16511] Length = 242 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 124/249 (49%), Gaps = 10/249 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHAL 58 M R +I Y+GS + G+QRQK ++QG++E+A+ L G +V G+GRTD+GVHA Sbjct: 1 MQRIKAVIAYDGSAFEGFQRQKRTPRTVQGALERALASLGIGTPIV--GSGRTDAGVHAT 58 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL W L + + D I +L+ V FHAR+ A R +YR I Sbjct: 59 GQVIHFDLPPHWAKQPLDELQIHLNRRLDAIRFKHLTPVPADFHARYDAKER--IYRYIF 116 Query: 119 RQAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+ P E R ++ ++ D + A + GRHDF+ F + + IRTI Sbjct: 117 RREPSIFE--RKYVAGLAIADEAKLSEALKTFQGRHDFSHFLKTGSETAHNIRTITRAYF 174 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G I A FL Q+R V + V +G+ + L++ L+ R LAPPE Sbjct: 175 LRRGKYGYIYFHADGFLRAQVRMMVHAAAAVANGELSLEQLKEQLELGKRYTTR-LAPPE 233 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 234 GLYLARVIY 242 >gi|153854831|ref|ZP_01996054.1| hypothetical protein DORLON_02059 [Dorea longicatena DSM 13814] gi|149752533|gb|EDM62464.1| hypothetical protein DORLON_02059 [Dorea longicatena DSM 13814] Length = 245 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 13/247 (5%) Query: 6 MIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAG-RTDSGVHALRQV 61 + IEY+GS Y GW R ++G++I I + + +T E + G RT+ GVHA Q+ Sbjct: 6 LTIEYDGSRYQGWTRLGKDESGNTISNKITEVLKKMTEEDDLELFCGCRTEVGVHAYAQI 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + LN YL + I+I+++ V ++FHA+ +A ++Y+YR+ Sbjct: 66 ANFKTSSSTTTQNIKHYLNRYLPMD--IAIIDVKEVPERFHAQLNATSKTYVYRMTIDDV 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ + + D M+ AA+ L GRHDF F S + S +R I FD++ +G Sbjct: 124 PSVFDRKYTYHCYRIPDKRLMQQAAEKLTGRHDFRNFSSAK-KTKSTVREI--FDIDIYG 180 Query: 182 NLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ E++++ A FLH R VG+L +G G + D++ E P+GL Sbjct: 181 DIEEMQILIHADDFLHNMARIIVGTLMDIGLGNRSVQDIDDIFAGI--LEASAPCDPKGL 238 Query: 240 YFDSVEY 246 Y + Y Sbjct: 239 YLQEITY 245 >gi|139438880|ref|ZP_01772340.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC 25986] gi|133775591|gb|EBA39411.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC 25986] Length = 274 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 28/256 (10%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ-----VA 62 + Y+GS Y G+ Q +++ G + +AI + + + AGRTD+GVHA+ Q V Sbjct: 21 VAYDGSSYSGFAEQPGQATVAGELRRAIETLLRRPIDLTCAGRTDAGVHAVAQYISVPVT 80 Query: 63 HFDLV---REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +L R W+ +A++A L I+I + K F ARF A R+Y YRI R Sbjct: 81 DAELALTRRRWL-----RAMDALLP--KDIAINEVYRARKGFSARFDARSRTYTYRIADR 133 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 A L +G W LD E M A L+G DF +F C+ +S + H V Sbjct: 134 DARPVLSRGAVWWHRYPLDVEAMSAACPALLGEQDFKSF----CKVASAVGKPTHRCVMR 189 Query: 179 -------SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +FG +++ + +FLH+ +R+ VG+L +G + + + + A DR Sbjct: 190 AEFGHEVAFGEDILTFTIEGNAFLHSMVRTIVGTLVEIGMHRRKPEWMREVIDACDRTAA 249 Query: 231 GPLAPPEGLYFDSVEY 246 GP AP GL F V+Y Sbjct: 250 GPTAPACGLTFMGVDY 265 >gi|294630922|ref|ZP_06709482.1| tRNA pseudouridine synthase A [Streptomyces sp. e14] gi|292834255|gb|EFF92604.1| tRNA pseudouridine synthase A [Streptomyces sp. e14] Length = 284 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 122/253 (48%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSAFHGWAKQAGGKRTVQGEIEDALRTVTRSQETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QVAH DL + W L K L ++ + + L F+ARFSA+ R Y YR Sbjct: 70 GQVAHVDLPEQVWREHHEKLLKRLAG--RLPRDVRVWALRPAPSGFNARFSAVWRRYAYR 127 Query: 116 IITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 128 VTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARRLLGEHDFAAY-CKKREGATTIRTLQE 186 Query: 175 FDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + +I V A +F H +RS +G+L VGDG T K L A R + Sbjct: 187 LSLRRGADGIITATVRADAFCHNMVRSLIGALLFVGDGHRTPDWPGKVLAAGVRDSAVHV 246 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 VRPHGLTLEEVGY 259 >gi|227501274|ref|ZP_03931323.1| tRNA-pseudouridine synthase I [Anaerococcus tetradius ATCC 35098] gi|227216507|gb|EEI81913.1| tRNA-pseudouridine synthase I [Anaerococcus tetradius ATCC 35098] Length = 246 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 121/250 (48%), Gaps = 8/250 (3%) Query: 1 MIRYCMI-IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR ++ Y+G+ + G+Q QK+ S++ I+KA+ VTGE + GRTDSGVHA Sbjct: 1 MIRNVLVETAYDGTNFAGFQYQKDQRSVEEEIKKALVKVTGEDNRIVSCGRTDSGVHAKS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSI--VDKQFHARFSAIRRSYLYRII 117 +F + P KA + +L++ IL LS VD FHARFS + Y Y I Sbjct: 61 HFFNFLTASKIDP----KAFSYHLQVHLPADILALSSREVDLSFHARFSCKSKLYKYVIY 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFD 176 + + + I LD + + + L G HDF +F R + + +R ID Sbjct: 117 RGKGMHPIYRNYKEEISYKLDLKRLEEGLKLLCGEHDFRSFMREDKDLSINTVRKIDQAY 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G+ +EI A SFLH Q+R VGSL + GK + D ++ + P Sbjct: 177 FLENGDDLEIYFKAESFLHNQVRIMVGSLVELSRGKLSLDDYKRFFDEDYKIRANPALGA 236 Query: 237 EGLYFDSVEY 246 +GLY VE+ Sbjct: 237 QGLYLWRVEF 246 >gi|302558965|ref|ZP_07311307.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000] gi|302476583|gb|EFL39676.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000] Length = 285 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 122/255 (47%), Gaps = 12/255 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVH 56 +R + + Y+G+ + GW RQ G ++QG IE A+ VT G + + AGRTD+GVH Sbjct: 9 FVRVRLDLSYDGAEFSGWARQAGGRRTVQGEIEDALRTVTRSGGTVYELTVAGRTDAGVH 68 Query: 57 ALRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 A QVAH DL RE W L K L ++ + + L F+ARFSA+ R Y Sbjct: 69 ARGQVAHVDLPREVWAEHHTKLLKRLAG--RLPRDVRVWALREAPAGFNARFSAVWRRYA 126 Query: 114 YRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ + L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 127 YRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAY-CKRREGATTIRTL 185 Query: 173 DHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + ++ V A +F H +RS +G+L VGDG + L A R Sbjct: 186 QELSLLRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRPPHWPAEVLAAGVRDSAV 245 Query: 232 PLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 246 HVVRPHGLTLEEVGY 260 >gi|189346490|ref|YP_001943019.1| tRNA pseudouridine synthase A [Chlorobium limicola DSM 245] gi|238692218|sp|B3EIU9|TRUA_CHLL2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189340637|gb|ACD90040.1| tRNA pseudouridine synthase A [Chlorobium limicola DSM 245] Length = 243 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 112/242 (46%), Gaps = 9/242 (3%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 +EY+G+ + GWQRQ G ++QG +E + + E + + AGRTD GVHA QV +F Sbjct: 8 VEYDGTDFCGWQRQPGGIQTLQGELEAQLGRILQENISLTAAGRTDKGVHARLQVVNFMT 67 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + ALN+ L DT+ + N +V FHARFSA R Y Y ++ + P AL Sbjct: 68 GSAMELSKMAHALNSLL--PDTVRVSNPHVVPLDFHARFSAKEREYRYFLL--EEPSALR 123 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 SL M+ AA LVG HDF +P+ I + + Sbjct: 124 CRFTGCSKGSLHIGVMQDAAGLLVGEHDFLLLSKEPADKKNPVCLIKECEWQEENGVFVF 183 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP--PEGLYFDSV 244 R+ A FL + +R VG + VG G+ DL L D PL P P GL+ V Sbjct: 184 RIRANRFLRSMVRYLVGVMIAVGRGRAVPEDLGMLL--DDGLMTFPLFPAEPNGLFLWDV 241 Query: 245 EY 246 Y Sbjct: 242 SY 243 >gi|256420466|ref|YP_003121119.1| tRNA pseudouridine synthase A [Chitinophaga pinensis DSM 2588] gi|256035374|gb|ACU58918.1| tRNA pseudouridine synthase A [Chitinophaga pinensis DSM 2588] Length = 250 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 120/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ + G+Q Q N ++Q I+ AI + +V G+ RTD+GVHA + Sbjct: 1 MRYFIEVAYKGTSFGGFQIQDNVETVQSVIDHAISTLMRGAIVTTGSSRTDAGVHARQNF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + P L K +NA L + + N+ V H+RF+A+ RSY Y + + Sbjct: 61 LHFDMEQPLHPQFLYK-VNAIL--PPDVVMRNIYRVADDAHSRFAALSRSYEYTLYMEKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++G + P +L E + AA L +F TF + Q + I + Sbjct: 118 PFMRDRG--YFFPYTLHPELLHEAASVLREYENFMTFSKRNTQVKTYNCNIMSSEWEVGE 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I RV A FL +R VG++ VG GK T +A+++++ PP+GL+ Sbjct: 176 DRIVYRVTANRFLRGMVRGMVGTMLRVGRGKLTMDGFREAIESRNCVNADFAVPPQGLFL 235 Query: 242 DSVEY 246 V Y Sbjct: 236 MKVAY 240 >gi|257784931|ref|YP_003180148.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469] gi|257473438|gb|ACV51557.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469] Length = 294 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 115/245 (46%), Gaps = 10/245 (4%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH---FDL 66 Y G+ + G+ Q S+ G + +A+ V V + AGRTD+GVHA Q +D Sbjct: 44 YRGAAFCGFAEQPTQRSVAGDLRRALETVLRREVELTCAGRTDAGVHAQVQYVSLPVYDA 103 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + L ++L A D ISI L + F ARF A RSY YRI A L Sbjct: 104 DLSFSGEKLVRSLTAL--TDDDISIRQLFRAPQGFSARFDAQARSYRYRICADSARPILG 161 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGN--- 182 W LD + M AAQ LVG HDF +F ++I + R ++ V Sbjct: 162 WDHVWWYNGHLDADLMDKAAQALVGEHDFKSFCKAISAEGKPTHRFVERLSVEEIEEAGE 221 Query: 183 -LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ VG+L +G G +++ L A++R G AP +GL F Sbjct: 222 KLIAVDITGNAFLHNMVRTIVGTLVEIGRGHRPVEWIDEVLAAKNRIAAGSCAPAQGLTF 281 Query: 242 DSVEY 246 +V Y Sbjct: 282 VNVRY 286 >gi|300867109|ref|ZP_07111775.1| tRNA pseudouridine synthase A [Oscillatoria sp. PCC 6506] gi|300334864|emb|CBN56941.1| tRNA pseudouridine synthase A [Oscillatoria sp. PCC 6506] Length = 265 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 116/250 (46%), Gaps = 7/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++I+Y G+ GWQRQ + ++Q IE I V V +HGAGRTDSGVHA Q Sbjct: 1 MQRIALVIQYIGTDLHGWQRQPHQRTVQEEIETTISTVLQRPVTLHGAGRTDSGVHAAAQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD VP + LN+ ++ I I + V+ +HARFSA R Y Y + T Sbjct: 61 VAHFDAEGP-VPAHRWQDILNS--RLPKDILIRASAKVEPTWHARFSATWRRYRYTLYTD 117 Query: 120 QAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P + AW LD ++ A L+GR F + + Sbjct: 118 PVPNLFVRPFAWHYYHAPLDESLIQAALTPLIGRFHLAAFHRAGSSRPHSWVDVQVAECQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL-APPE 237 FG I I V A FL+ +R VG L VG G+ S + K + Q+R+E AP Sbjct: 178 RFGPFIHIEVQASGFLYGMMRLLVGLLVQVGRGE-RSLENFKDIWVQERREMVKYSAPAH 236 Query: 238 GLYFDSVEYS 247 GL V Y Sbjct: 237 GLCLLRVGYP 246 >gi|320459238|dbj|BAJ69859.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 303 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 46/288 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPAGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + + +G + +SLD E M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEIDPRLRGCVLTVDESLDLELMNRAAALTIGLHDFGSFATPNP 180 Query: 164 QASS------------PIRTI--------DHFDVNSF-GNLIEIRVVARSFLHTQIRSFV 202 ++ PI + + + S L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPITPLVPDAMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GS VG G+ W + + ++ GP+A P+GL + + Y Sbjct: 241 GSCIKVGSGRKSLEWFAGKMADPVR---EGSSGPIA-PQGLTLEHIAY 284 >gi|226227135|ref|YP_002761241.1| tRNA pseudouridine synthase A [Gemmatimonas aurantiaca T-27] gi|226090326|dbj|BAH38771.1| tRNA pseudouridine synthase A [Gemmatimonas aurantiaca T-27] Length = 259 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 14/250 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH-GAGRTDSGVHALRQVAHF 64 ++ +Y+G + GWQRQ + ++QG +E+ + ++G + V GAGRTD+GVHA Q Sbjct: 8 LVTQYDGGRFAGWQRQPDVRTVQGDMERVLGRLSGGLYVPAVGAGRTDAGVHAHGQGVGV 67 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ-APL 123 + +W L +A+NA L D I + ++ +FH R+SA R Y Y I T + A Sbjct: 68 RMPPQWTAPRLRRAMNALLP--DDIWVAAAYQMEPEFHPRYSATARRYGYLIGTDELASS 125 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI----RTIDHFD--V 177 + W + + LD E + A L+G H F F H ++P+ R I H V Sbjct: 126 PFRRRHEWALHRPLDVEALHGEAAELLGEHTFRAFAIAH---TAPVDDHHRCIIHHAAWV 182 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + V A FLH +R VG++ V G+ + + L D + P AP Sbjct: 183 PREGGWV-FEVSANRFLHHMVRFLVGTMVDVALGRRPRGTIARLLVTPDNADTSPPAPAH 241 Query: 238 GLYFDSVEYS 247 GL V Y Sbjct: 242 GLSLREVTYP 251 >gi|325972112|ref|YP_004248303.1| tRNA pseudouridine synthase A [Spirochaeta sp. Buddy] gi|324027350|gb|ADY14109.1| tRNA pseudouridine synthase A [Spirochaeta sp. Buddy] Length = 281 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 112/247 (45%), Gaps = 8/247 (3%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y+GS Y GWQ+Q N S+ IE+ + + E V V G+GRTDSGVHAL QV H D Sbjct: 23 MTVSYHGSHYSGWQKQSNAKSVAEIIEQTLKQILDEEVQVVGSGRTDSGVHALAQVCHMD 82 Query: 66 LVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + ALN L I IL+ D FHAR++ + R+Y Y A Sbjct: 83 IANTRIKGEKFALALNRLLPAD--IRILDSCETDGTFHARYTTMARTYRYYYKRECDMTA 140 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH----FDVNSF 180 + + + E + A + G HDFTTF + S R I +++ F Sbjct: 141 FDDKLVAKVKQFPSLELLNEYACSIRGTHDFTTFTASGDLCPSRFRDIYESYWRLEIDRF 200 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+ + +FL+ +RS VGS+ + L ++DR G A GL Sbjct: 201 GKELLSYTICGNAFLYKMVRSLVGSMMEFATKDLPVEEFRHILASKDRSRSGRTASACGL 260 Query: 240 YFDSVEY 246 Y + Y Sbjct: 261 YLYRISY 267 >gi|213693060|ref|YP_002323646.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524521|gb|ACJ53268.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 305 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 46/288 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 3 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 62 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 63 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPAGFDAR 122 Query: 105 FSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + + +G + +SLD E M AA +G HDF +F + + Sbjct: 123 FSALERTYVYRVADRSSEIDPRLRGCVLTVDESLDLELMNRAAALTIGLHDFGSFATPNP 182 Query: 164 QASS------------PIRTI--------DHFDVNSF-GNLIEIRVVARSFLHTQIRSFV 202 ++ PI + + + S L+ +VA +F +RS V Sbjct: 183 GGTTIREVKTAYWRRVPITPLVPDAMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 242 Query: 203 GSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GS VG G+ W + + ++ GP+A P+GL + + Y Sbjct: 243 GSCIKVGSGRKSLEWFAGKMADPVR---EGSSGPIA-PQGLTLEHIAY 286 >gi|206602902|gb|EDZ39382.1| Pseudouridylate synthase [Leptospirillum sp. Group II '5-way CG'] Length = 268 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 117/255 (45%), Gaps = 13/255 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+G G+ GWQ Q G+++Q IE+A +T + V + G+GRTD+GV A Q Sbjct: 1 MQRFAFVVSYDGRGFQGWQSQIRGNAVQDHIEEAFCRLTRQDVRISGSGRTDTGVSAAGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL W P L + LN +L S I IL + V FHAR +R+ Y YR ++R Sbjct: 61 VFHCDLAGPGWTPDSLSRGLNHFL--SPAIRILQAAAVAPDFHARHDVVRKIYRYRWVSR 118 Query: 120 Q------APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 P +L P + ++ A + L G +DFT F RTID Sbjct: 119 SRKMREVGPTEDPFCGTFLPP--VHWTLLQQATKLLEGSNDFTRFTVQKSCPEDARRTID 176 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + +++ V R FLH IR +L G K + + L L Sbjct: 177 AIQWIAGPYTLDLWVAGRGFLHMMIRYLAMALLETGQQKRSLKSFQDLLLTGSLPPVPAL 236 Query: 234 --APPEGLYFDSVEY 246 APP+GL V Y Sbjct: 237 HPAPPQGLSLVRVLY 251 >gi|134103229|ref|YP_001108890.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] gi|291007979|ref|ZP_06565952.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] gi|133915852|emb|CAM05965.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] Length = 296 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 139/272 (51%), Gaps = 37/272 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 ++R + + Y+G+ +FGW +Q + ++QG +E A+ V +VV AGRTD+G Sbjct: 13 LVRLRLEVSYDGTDFFGWAKQPDRRTVQGLLEDALRKQPPGRSVPRSVVV---AGRTDTG 69 Query: 55 VHALRQVAHFDLV-------------REWVPVILCKALNAYLKI-SDTISILNLSIVDKQ 100 VHA QV H D+V +P L + + + +I + +L + Sbjct: 70 VHATGQVVHVDVVPSAPDEGGRLPLDEHGIP-DLDRMRHRWNRILPGDVRVLGARVAPAG 128 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDF 155 F ARFSA+RR Y Y++ AP ++ R +W P LD + + A++ L+G +DF Sbjct: 129 FDARFSAMRRHYRYQVS--DAPWGVDPLRRRDTLSWNRP--LDVDALNAASEDLLGLNDF 184 Query: 156 TTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F + ++ +R + F + +L+ RV A +F H+ +RS VG+L +VGDG+ + Sbjct: 185 AAF-CKQREGATTVRELQRFSWERAEPHLLVARVSADAFCHSMVRSLVGALLMVGDGRRS 243 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 T +AL+A +R +AP GL V+Y Sbjct: 244 RTWPAEALRAAERTST--VAPAHGLTLVGVDY 273 >gi|317483422|ref|ZP_07942412.1| tRNA pseudouridine synthase A [Bifidobacterium sp. 12_1_47BFAA] gi|316915108|gb|EFV36540.1| tRNA pseudouridine synthase A [Bifidobacterium sp. 12_1_47BFAA] Length = 303 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 46/288 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + + +G + ++LD E M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 164 QASS------------PIRTIDHFDVNSF---------GNLIEIRVVARSFLHTQIRSFV 202 ++ PI + ++ S L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GS VG G+ W + + + ++ GP+A P+GL + + Y Sbjct: 241 GSCIKVGSGRKSLEWFADKMAEPVR---EGSSGPIA-PQGLTLEHIAY 284 >gi|227546504|ref|ZP_03976553.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213053|gb|EEI80932.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 305 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 46/288 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 3 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 62 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 63 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 122 Query: 105 FSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + + +G + ++LD E M AA +G HDF +F + + Sbjct: 123 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 182 Query: 164 QASS------------PIRTIDHFDVNSF---------GNLIEIRVVARSFLHTQIRSFV 202 ++ PI + ++ S L+ +VA +F +RS V Sbjct: 183 GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 242 Query: 203 GSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GS VG G+ W + + + ++ GP+A P+GL + + Y Sbjct: 243 GSCIKVGSGRKSLEWFAGKMAEPVR---EGSSGPIA-PQGLTLEHIAY 286 >gi|23466158|ref|NP_696761.1| tRNA pseudouridine synthase A [Bifidobacterium longum NCC2705] gi|46190438|ref|ZP_00121526.2| COG0101: Pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|189440597|ref|YP_001955678.1| pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|239621038|ref|ZP_04664069.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454842|ref|YP_003661986.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum JDM301] gi|312133902|ref|YP_004001241.1| trua [Bifidobacterium longum subsp. longum BBMN68] gi|322689901|ref|YP_004209635.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis 157F] gi|42559815|sp|Q8CY46|TRUA_BIFLO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238692041|sp|B3DQE2|TRUA_BIFLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|23326895|gb|AAN25397.1| tRNA pseudouridine synthase A [Bifidobacterium longum NCC2705] gi|189429032|gb|ACD99180.1| Pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|239516139|gb|EEQ56006.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516444|emb|CBK70060.1| pseudouridylate synthase I [Bifidobacterium longum subsp. longum F8] gi|296184274|gb|ADH01156.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum JDM301] gi|311773196|gb|ADQ02684.1| TruA [Bifidobacterium longum subsp. longum BBMN68] gi|320461237|dbj|BAJ71857.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis 157F] Length = 303 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 46/288 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + + +G + ++LD E M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 164 QASS------------PIRTIDHFDVNSF---------GNLIEIRVVARSFLHTQIRSFV 202 ++ PI + ++ S L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GS VG G+ W + + + ++ GP+A P+GL + + Y Sbjct: 241 GSCIKVGSGRKSLEWFAGKMAEPVR---EGSSGPIA-PQGLTLEHIAY 284 >gi|322691842|ref|YP_004221412.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456698|dbj|BAJ67320.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum JCM 1217] Length = 303 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 46/288 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + + +G + ++LD E M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 164 QASS------------PIRTIDHFDVNSF---------GNLIEIRVVARSFLHTQIRSFV 202 ++ PI + ++ S L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GS VG G+ W + + + ++ GP+A P+GL + + Y Sbjct: 241 GSCIKVGSGRKSLEWFAGKMAEPVR---EGSSGPIA-PQGLTLEHIAY 284 >gi|302553571|ref|ZP_07305913.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM 40736] gi|302471189|gb|EFL34282.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM 40736] Length = 284 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 120/253 (47%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSKETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QVAH DL RE W L K L ++ + + L F+ARFSA+ R Y YR Sbjct: 70 GQVAHVDLPREVWAEHHQKLLKRLAG--RLPRDVRVWALREAPSGFNARFSAVWRRYAYR 127 Query: 116 IITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + L + LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 128 VTDNPGGVDPLLRNHVLWHDWPLDVDAMNEAARRLLGEHDFAAY-CKKREGATTIRTLQE 186 Query: 175 FD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V +I V A +F H +RS +G+L VGDG K L A R + Sbjct: 187 LSLVKGEDGIITATVRADAFCHNMVRSLIGALLFVGDGHRPPDWPGKVLAAGVRDSAVHV 246 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 VRPHGLTLEEVGY 259 >gi|290958122|ref|YP_003489304.1| tRNA-pseudouridine synthase [Streptomyces scabiei 87.22] gi|260647648|emb|CBG70753.1| putative tRNA-pseudouridine synthase [Streptomyces scabiei 87.22] Length = 287 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 122/254 (48%), Gaps = 13/254 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT GE + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSGETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLV----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QVAH DL RE +L + ++ + + L F+ARFSAI R Y Y Sbjct: 70 GQVAHVDLPEAVWREHHEKLLKRLAG---RLPRDVRVWALREAPSGFNARFSAIWRRYAY 126 Query: 115 RIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R+ + L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 127 RVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARLLLGEHDFAAY-CKRREGATTIRTLQ 185 Query: 174 HFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V ++ V A +F H +RS +G+L VGDG + K L A R Sbjct: 186 ELSLVRGDDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGADWPGKVLAAGVRDSAVH 245 Query: 233 LAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 246 VVRPHGLTLEEVGY 259 >gi|325479638|gb|EGC82730.1| tRNA pseudouridine synthase A [Anaerococcus prevotii ACS-065-V-Col13] Length = 246 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 118/248 (47%), Gaps = 4/248 (1%) Query: 1 MIRYCMI-IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MI+ ++ Y+G+ + G+Q QK+ S++ + KAI VTGE + GRTDSGVHA Sbjct: 1 MIKNILLETSYDGALFSGFQYQKDQRSVEEELTKAIRKVTGEENRIVSCGRTDSGVHAKS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F + P+ + + +L D I ++ VD FHARFSA + Y Y I Sbjct: 61 HFVNFLTASDINPIGIKFQIQPHL--PDDILAISSREVDLNFHARFSAKSKLYKYVICRS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN 178 + + + + LD + + LVG HDF F S + +RTI+ Sbjct: 119 KDMHPIYRNYKEHVTYKLDLKKLEEGLNLLVGTHDFRLFMMEDKNLSINTVRTIEEAYFI 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G +EI SFLH Q+R VGSL + G+ + D EK ++ K P EG Sbjct: 179 ENGADLEIYFKGESFLHNQVRIMVGSLIELARGRISLDDYEKFFDKENTKRANPALGAEG 238 Query: 239 LYFDSVEY 246 LY VE+ Sbjct: 239 LYLWRVEF 246 >gi|118616627|ref|YP_904959.1| tRNA pseudouridine synthase A [Mycobacterium ulcerans Agy99] gi|118568737|gb|ABL03488.1| pseudouridine synthase a, TruA [Mycobacterium ulcerans Agy99] Length = 260 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 123/243 (50%), Gaps = 22/243 (9%) Query: 21 QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP-------- 72 Q ++ G +++A+ V V + AGRTD+GVHA QVAH D+ + +P Sbjct: 2 QTGQRTVAGVLDEALTTVLRTPVRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSAR 61 Query: 73 ------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + L + L +L + +L+++ F ARFSA+RR Y+YR+ T AP +E Sbjct: 62 AGDPEFLPLVRRLARFLPAD--LRVLDIARAPTAFDARFSALRRHYVYRLST--APYGVE 117 Query: 127 KGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 +A + P+ LD + M +A+Q L+G H+F F + ++ IR + D + G+L Sbjct: 118 PQQARYVTVWPRELDIDAMTVASQELLGLHNFAAF-CRRREGATTIRDLQRLDWSRNGHL 176 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +V A +F + +RS VG+L VG+ + T + L A R AP GL Sbjct: 177 VTAQVSADAFCWSMVRSLVGALLAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAK 236 Query: 244 VEY 246 V+Y Sbjct: 237 VDY 239 >gi|282933805|ref|ZP_06339157.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] gi|281302070|gb|EFA94320.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] Length = 223 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 5/211 (2%) Query: 40 GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVD 98 G+ +VVHG+GRTD+GVHAL QV HFD + +P + ALN+ + I + IV+ Sbjct: 2 GQRIVVHGSGRTDAGVHALGQVIHFDFPNDNIPANRMVLALNSMMPTD--IIFKDAEIVN 59 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + FH ++S + Y Y + + ++ P L+ M+ AA L+G HDFT+F Sbjct: 60 EDFHVQYSTHGKWYRYIVNQDRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSF 119 Query: 159 RSIHCQASSPIRTIDHFDV--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + Q +RTI + + S N I + FL+ +R VG+L +G+ + Sbjct: 120 AASGGQIIDKVRTIYYVKIWQKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVH 179 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 DL++ + A+DR+E AP GLY V Y Sbjct: 180 DLKRVILAKDRQEVINTAPASGLYLYHVFYE 210 >gi|323357344|ref|YP_004223740.1| pseudouridylate synthase [Microbacterium testaceum StLB037] gi|323273715|dbj|BAJ73860.1| pseudouridylate synthase [Microbacterium testaceum StLB037] Length = 285 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 125/262 (47%), Gaps = 18/262 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ ++QG +E+A+ + G + AGRTD+GVHA QV Sbjct: 1 MRLRLDISYDGTHFRGWARQPGLRTVQGVLEEALARILGGDPRLVVAGRTDAGVHASGQV 60 Query: 62 AHFDL---VREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 AH DL + +P L + L +++ S + F ARFS Sbjct: 61 AHLDLDDAQQARLPRRRREGDEGDAVAALAGRVRGVLGAYPDVTVHRSSCAPEGFDARFS 120 Query: 107 AIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI QA LE+ R + SLD + M AAQ L+G HDF + +A Sbjct: 121 AVWRRYSYRIADAQAGYEPLERLRTTSVRASLDVDAMHAAAQRLIGLHDFAAYCKAREEA 180 Query: 166 SSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IRT+ +D + I I V A +F H+ +R+ VG+ VG+G+ D+ K Sbjct: 181 TT-IRTLLEYDWRRGDDGILIANVRADAFCHSMVRALVGACVAVGEGRLEVDDVIKIRDE 239 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R + GL V Y Sbjct: 240 GRRTADSKVLAARGLVLAEVGY 261 >gi|303284649|ref|XP_003061615.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456945|gb|EEH54245.1| predicted protein [Micromonas pusilla CCMP1545] Length = 390 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 105/207 (50%), Gaps = 37/207 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH---GAGRTDSGVHALR 59 RY + I+Y+G + G+QRQ N ++QG +E+A+ TG VH G+ RTD+GVHAL Sbjct: 7 RYLLRIQYDGGAFHGFQRQANARTVQGCVEEAMAKFTGVEGGVHAITGSSRTDAGVHALD 66 Query: 60 QVAHFDLVREWVPV----------ILCKALNAYL-KISDTISILNLS-IVDKQFHARFSA 107 AH D+ + KA+N YL K + SI + + + + FHAR+ A Sbjct: 67 ATAHVDIDDGDAGDAPPPPPHSARTVMKAVNHYLRKTAPMASIASCARVCPETFHARYCA 126 Query: 108 IRRSYLYRI-ITRQAPLALEKGRAWLI---------------PKS------LDCENMRIA 145 R+Y Y I + R P ++G+AW + P LD + M A Sbjct: 127 TARTYRYLIYLGRDEPSVFDRGKAWHVYDGRNASGAGVNTHEPSGGCALGGLDVDAMNAA 186 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTI 172 A+ VG HDF+ FR+ CQASSPIR + Sbjct: 187 ARRFVGEHDFSAFRANGCQASSPIRRL 213 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA-QDRKECGPLAPPEGLYFD 242 I I A SFL+ Q+R VG+L+ VG G+ + D+ L+ D P+AP GLY + Sbjct: 286 IVITARAPSFLYHQVRLMVGTLRAVGAGELSPDDVTDLLEGTTDASRAPPMAPAHGLYLE 345 Query: 243 SVEY 246 V Y Sbjct: 346 RVHY 349 >gi|282601160|ref|ZP_05980960.2| tRNA pseudouridine synthase A [Subdoligranulum variabile DSM 15176] gi|282570067|gb|EFB75602.1| tRNA pseudouridine synthase A [Subdoligranulum variabile DSM 15176] Length = 249 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 7/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y + I Y G+ Y G+Q Q N ++ ++ A+ V G V G RTD+GVHA R Sbjct: 1 MTYLLWITYKGTNYAGFQVQPNAPTVCAVLQDAMQAVLGSRPDVKGCSRTDAGVHARRFA 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + ALNA+L I L + V + FHAR++A ++Y Y I+ + Sbjct: 61 LSFCYTGRVPAEKIVPALNAHLPPD--IRALAVQAVPEGFHARYAAHEKTYCYHILNARI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----RSIHCQASSPIRTIDHFDV 177 + + LD M+ AA VG HDF S+ + +RTI V Sbjct: 119 DDPFTLDTCHRVAQPLDLAAMQAAAAQFVGTHDFLALCASGSSVAAHGDT-VRTISRCTV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G+ I V A +L+ +R G+L G K T + LQ++DR++ GP P + Sbjct: 178 SRCGDRFVITVTADGYLYNMVRILAGTLVEAGLHKRTPDSIPALLQSRDRRQAGPTLPAK 237 Query: 238 GLYFDSVEY 246 GL+ + V Y Sbjct: 238 GLFLEDVAY 246 >gi|301788920|ref|XP_002929883.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like 1-like [Ailuropoda melanoleuca] Length = 290 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 136/275 (49%), Gaps = 35/275 (12%) Query: 3 RYCMIIEYNGSGYFGW---QRQKNGSSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHAL 58 RY + +Y G+ + G + + + Q +E+A + + V + RTD+GVHAL Sbjct: 11 RYLVYFQYLGTDFNGVAAVRGSQRAVAXQNYLEEAAKRLNSVVPVKFTISSRTDAGVHAL 70 Query: 59 RQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALNA+L+ I IL V FHAR +A R+YL Sbjct: 71 CNAAHLDVQRRSGQPPFSPEVLAEALNAHLR-HPAIRILQAFRVPSDFHARHAATSRTYL 129 Query: 114 YRIIT---RQAPLAL-EKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR++T R L++ E+ R W L LD + M+ AAQHL+G HDF+ F+S A+S Sbjct: 130 YRLVTGCHRPDQLSVFERNRCWPLRAGCLDVDAMQEAAQHLLGTHDFSAFQSAGSPAASS 189 Query: 169 IRTIDHFDVNS---------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 +RT+ V+ F NL ++SFL+ Q+R L VG G Sbjct: 190 VRTLRRASVSPDPGSPFVLPQENRLRFWNL---EFESQSFLYRQVRRMTAVLVAVGLGAL 246 Query: 214 TSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L+++D + +AP GL+ SV Y Sbjct: 247 MPAQVKVILESRDPLGRHQARVAPAHGLFLKSVLY 281 >gi|297192674|ref|ZP_06910072.1| tRNA pseudouridine synthase A [Streptomyces pristinaespiralis ATCC 25486] gi|197721671|gb|EDY65579.1| tRNA pseudouridine synthase A [Streptomyces pristinaespiralis ATCC 25486] Length = 286 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 121/254 (47%), Gaps = 11/254 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHA 57 +R + + Y+G + GW +Q G ++QG IE A+ VT G + AGRTD+GVHA Sbjct: 9 FVRVRLDLSYDGKDFSGWAKQAGGRRTVQGEIEDALRTVTRSGTTYELTVAGRTDAGVHA 68 Query: 58 LRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QVAH DL E W L K L ++S + I +++ + F+ARFSAI R Y Y Sbjct: 69 RGQVAHVDLPSELWAEHREKLLKRLAG--RLSRDVRIWSVAEAPEGFNARFSAIWRRYAY 126 Query: 115 RIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R+ + L +G LD M A+ LVG HDF + A++ IRT+ Sbjct: 127 RVTDNPGGVDPLLRGHVLWHDWPLDVAAMNEASAGLVGEHDFAAYCKKRDGATT-IRTLQ 185 Query: 174 HFDVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +I V A +F H +RS VG+L VGDG + K L A R Sbjct: 186 QLSWERDPSGVITATVKADAFCHNMVRSLVGALLFVGDGHRPAEWPAKVLAAGVRDSAVH 245 Query: 233 LAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 246 VVRPHGLTLEEVGY 259 >gi|229815740|ref|ZP_04446065.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM 13280] gi|229808656|gb|EEP44433.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM 13280] Length = 292 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 123/257 (47%), Gaps = 29/257 (11%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV----A 62 + Y+G+ + G+ Q G ++ G + +A+ + V + AGRTD+GVHA+ Q A Sbjct: 38 LGYDGAAFSGFAEQPEGLRTVAGEVRRALETILRRPVDLTCAGRTDAGVHAVSQYVSIPA 97 Query: 63 HFDLVR----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H D + W+ +A+ A L SD I++ + F ARF A R+Y YRI+T Sbjct: 98 HADELAITHARWM-----RAMAALLP-SD-IALNAVYHARPGFSARFDARSRTYTYRIVT 150 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHFD 176 A L + W LD + M AA LVG HDF +F C+ SS I T + Sbjct: 151 GDARPLLTRSVTWWHRLPLDMDAMERAAACLVGEHDFKSF----CKTSSAIDKPTCRNVI 206 Query: 177 VNSFGNL-------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 SF I + +FLH+ +R+ VGSL VG G+ L AL A DR+ Sbjct: 207 AVSFERASALGEEHIAFTITGNAFLHSMVRTIVGSLVEVGAGRRDERWLSDALAACDRRA 266 Query: 230 CGPLAPPEGLYFDSVEY 246 GP AP GL F V Y Sbjct: 267 AGPTAPARGLCFMDVAY 283 >gi|242371866|ref|ZP_04817440.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W1] gi|242350373|gb|EES41974.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W1] Length = 267 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 2/243 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L + I + ++ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PNDIYVKSVQTVDENFHCRYDCVGKRYRYKVYQGAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RDPFKSGLETFIDNDLDLAKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 AGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRNPDEVPQLLEEKNRNNVPFTAPSEGLYL 238 Query: 242 DSV 244 + V Sbjct: 239 EKV 241 >gi|332261432|ref|XP_003279774.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like 1-like [Nomascus leucogenys] Length = 287 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 115/239 (48%), Gaps = 25/239 (10%) Query: 32 EKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR-----EWVPVILCKALNAYLKIS 86 E A L + E V + RTD+GVHAL AH D+ R + P +L +ALN +L+ Sbjct: 31 EAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLTEALNTHLR-H 89 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIIT----RQAPLALEKGRAWLIPKS-LDCEN 141 I +L V FHAR +A R+YLYR+ T R E+ W +P LD Sbjct: 90 PAIRVLRAFRVPNDFHARHAATSRTYLYRLATGCNRRDELPVFERNLCWALPADCLDVVA 149 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS--FGNLI----------EIRVV 189 M+ AAQHL+G HDF+ F+S SP+RT+ V+ L+ + Sbjct: 150 MQEAAQHLLGTHDFSAFQSTGSPVPSPVRTLRRVSVSPGQASPLVTQESRKLRFWSLEFE 209 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++SFL+ Q+R L VG G ++ L++QD K +AP GL+ SV Y Sbjct: 210 SQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 268 >gi|299541963|ref|ZP_07052286.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1] gi|298725701|gb|EFI66342.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1] Length = 246 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q +E+ + ++ GE V V +GRTD+ VHA Sbjct: 1 MRRLKVIISYDGTLFSGYQVQPGERTVQAELERVLAIMHKGEQVKVTASGRTDAKVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN +++ I +L++ V FHAR+ + Y Y I Sbjct: 61 QTLHFDTSLAIPAEKYRKALN--VQLPRDIRVLSVEEVAHDFHARYDVAGKRYRY--IWS 116 Query: 120 QAPLALEKGRAWLIPKS---LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P+ R + + + + E M+ AA+ + G HDF+ F + + +RT+ Sbjct: 117 CEPIQSPFRRYYTVETNGVKPNVEAMQEAAKAITGTHDFSCFCAANTSVKDKVRTVTLLQ 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + + + FL+ +R G+L VG G+ ++ + + + +R + G APP Sbjct: 177 FEWHGEELHMVIEGNGFLYNMVRIIAGTLWEVGIGRRKVDNVSQVVASGNRDKAGKTAPP 236 Query: 237 EGLYFDSVEY 246 +GLY + V Y Sbjct: 237 QGLYLEKVFY 246 >gi|302336349|ref|YP_003801556.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084] gi|301320189|gb|ADK68676.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084] Length = 284 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 120/256 (46%), Gaps = 21/256 (8%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y G+G+ G+ Q ++ G + A+ + V + AGRTD+GV+AL Q + Sbjct: 24 LGYRGAGFAGFAEQPGQRTVAGELRTALETLLHRPVDLTCAGRTDAGVNALAQYVSLPVT 83 Query: 68 REWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 R + + +++ + ++ D +S+ L D F ARF A+ R Y YR+ A L Sbjct: 84 RGELEREGRRLVSSLVALTPDDLSVRGLYKADVSFSARFDALERGYRYRVACGSARPVLS 143 Query: 127 KGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----------IRTIDH 174 G W + LD + M AA L+G HDF +F C+ASS R + Sbjct: 144 WGHTWWLRSVADLDVDAMGEAASALLGEHDFRSF----CKASSAGLLEADGRSTCRRLSA 199 Query: 175 FDV----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 V + L+ I V +FLH +R G+L VG G ++ + +AL A DR Sbjct: 200 VSVVRAREAGEELVAIDVRGNAFLHNMVRVIAGTLVEVGRGHRDASWVARALAAHDRSAA 259 Query: 231 GPLAPPEGLYFDSVEY 246 GP AP GL F+ V Y Sbjct: 260 GPTAPAHGLTFEWVGY 275 >gi|226325156|ref|ZP_03800674.1| hypothetical protein COPCOM_02948 [Coprococcus comes ATCC 27758] gi|225206504|gb|EEG88858.1| hypothetical protein COPCOM_02948 [Coprococcus comes ATCC 27758] Length = 255 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 6/217 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+GS Y G+ +K +SI+ + AI VTG+ + A +T+ GVHA Q Sbjct: 12 MTTIKLTIEYDGSRYPGFSTKKKSTSIESKLTLAIRDVTGQSTQLFAAVKTEPGVHAAHQ 71 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + F L +E +L LNA L I++ +L I D++F A + +Y RI Sbjct: 72 IVSFQLEKESFSDNTELLKMKLNAALPAD--IAVTSLEIADERFVASLAVKSCTYTCRIA 129 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T A + ++ +SLD E+M+ AAQ L G HDF F + + S+ +RT++ + Sbjct: 130 TDPAAALFSRPYTCVVTESLDLESMQQAAQLLTGTHDFAAFSNGRTRKST-VRTVETIKI 188 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 N LI+I++ A SFL + G++ G K T Sbjct: 189 NREDQLIQIQLTANSFLRHMPQLLAGTILTAGKEKKT 225 >gi|301165600|emb|CBW25171.1| tRNA pseudouridine synthase A [Bacteriovorax marinus SJ] Length = 256 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 127/260 (48%), Gaps = 18/260 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHA 57 M Y +I+ Y G+ Y GWQ+Q + S +IQG +EKA+ ++ EI + G+GRTDSGVHA Sbjct: 1 MSFYKIILRYKGTQYQGWQKQPHTSQTIQGQLEKALKKISKSDEIHTI-GSGRTDSGVHA 59 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV + E P+ L KALN++L + I ++ + F+ F A ++Y Y Sbjct: 60 LGQVVRVQIPLELEPLSLLKALNSHL--PNDIECIHSENSSELFNPVFDAKDKTYKYLFS 117 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID---- 173 AL + + +D E MR A + +G HDF F ++ SS +R I Sbjct: 118 LNGRRNALVDDSMTCLDRPMDIEKMREACELFIGEHDFADFYTVGTDISSTVRVIYDCKL 177 Query: 174 HFDVNSFGNLIEI-------RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 H + G L E+ V FL +R VG+L +G GK DL+ AL + Sbjct: 178 HLEKQQ-GFLGEVYPEHYIFEVKGSGFLKQMVRLMVGTLWNIGLGKVELADLKMALNSPS 236 Query: 227 RKECGPLAPPEGLYFDSVEY 246 + +AP GLY V Y Sbjct: 237 GAKLAAVAPSNGLYLCEVNY 256 >gi|308814270|ref|XP_003084440.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus tauri] gi|116056325|emb|CAL56708.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus tauri] Length = 705 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 122/259 (47%), Gaps = 18/259 (6%) Query: 4 YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHALR 59 Y M I Y+G+ Y G+QRQ + +S+Q +E+ + +TGE + + G+GRTD GVHA Sbjct: 17 YAMTISYDGTNYKGFQRQGADVASVQRELERCLTRLTGEGRDALRLGGSGRTDGGVHARG 76 Query: 60 QVAHFDLVREWVPV---ILC-KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV HF ++W C KA+N L + FHARF A R++Y Y Sbjct: 77 QVVHFYSEKDWRSAEDFARCVKAMNGMLPRD--VRCERFWRPHPAFHARFHATRKTYAYY 134 Query: 116 IITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTF------RSIHCQASSP 168 + R + A ++ D + +R A Q+ VG DF F + + + Sbjct: 135 VDARSPHDVFARAYACQCGWRACDVDALRRACQYFVGTRDFRAFANTSRDKPTSDEDLNT 194 Query: 169 IRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 RTI FDV LI + FL+ Q+R+ VG+ +V G+ + L + DR Sbjct: 195 TRTIFRFDVFEQADGLIRLECEGDGFLYRQVRNMVGAALVVASGREKPEWILDLLASGDR 254 Query: 228 KECGPLAPPEGLYFDSVEY 246 + AP GL+ SVEY Sbjct: 255 RRVPTAAPARGLFLQSVEY 273 >gi|282890286|ref|ZP_06298816.1| hypothetical protein pah_c014o179 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499943|gb|EFB42232.1| hypothetical protein pah_c014o179 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 231 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 4/223 (1%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI 85 +IQ +EK I + + V V +GRTD+GVHA QVAHF E ++N L Sbjct: 2 AIQEIVEKEIGKIVRQPVRVVASGRTDAGVHARGQVAHFSTNAEIDLRRFLVSINGLL-- 59 Query: 86 SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIA 145 I + ++ V FHA++S ++Y Y + + + AW I + LD +++A Sbjct: 60 PKDIRVKDICQVPPDFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHIRQKLDLSQLQVA 119 Query: 146 AQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 AQ VG HDFT+F + + +RTI DV + FL+ +R+ VG Sbjct: 120 AQLFVGTHDFTSFANEAHREHPQNAVRTIKRVDVIMEDEGCRLEFEGDGFLYKMVRNMVG 179 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L V G TD+ A+DRK+ G APP GL+ V + Sbjct: 180 ILIEVATGYRPITDIPAIFAAKDRKKAGKAAPPHGLFLHQVNF 222 >gi|150390096|ref|YP_001320145.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149949958|gb|ABR48486.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 248 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y M+I Y+G Y G+ + K+ SIQG +E + + E V V A TD+GVH+ Sbjct: 1 MQNYKMMIAYDGRKYTGYNKSKDNLEKSIQGKLELILSKLYEEEVEVISAVSTDAGVHSK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+ +F + K + Y + ++D I IL++ D++FH+R+ +Y YR+ Sbjct: 61 GQIVNFIAPNSRLD---EKEIFDYFEKYLTDDIIILSVETADERFHSRYLMKSATYEYRL 117 Query: 117 ITRQAP--LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AP E+ L+ +++D ++ A ++LVG HDF F + + + + I+T+ Sbjct: 118 WKKDAPNRPLFERQYVNLMNQTVDVTKIKKAGKYLVGEHDFLAF-TTNRKTTKSIKTMVS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 DV N I I + A FL R VG+L +G G+ +EKA ++++ + G A Sbjct: 177 LDVMETRNEIIITMTANGFLLNMERVIVGTLIQIGLGQLPMNTIEKAFESKNMNDVGHKA 236 Query: 235 PPEGLYFDSVEY 246 L SVEY Sbjct: 237 SAGALCLLSVEY 248 >gi|119484807|ref|ZP_01619289.1| tRNA pseudouridine synthase A [Lyngbya sp. PCC 8106] gi|119457625|gb|EAW38749.1| tRNA pseudouridine synthase A [Lyngbya sp. PCC 8106] Length = 279 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 114/245 (46%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ NG ++Q IE AI V V +HGAGRTD+GVHA QVA Sbjct: 5 RIALVIQYQGTRFNGWQRQPNGRTVQEEIETAIANVVDSPVTLHGAGRTDTGVHAAAQVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF++ LN ++ I + + VD +HARFSA+ R Y Y + T P Sbjct: 65 HFEVTGPIPGYRWATILNH--RLPHDILVRASAQVDPSWHARFSAVWRRYRYLLYTDSRP 122 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W LD + M+ A L+GRH + F+ + + G Sbjct: 123 NLFVRPWSWHYYHAPLDEKLMQAALIPLLGRHHLSAFQRAGTRRPHAWVDVQDVSCQRQG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+I V A FL+ +R +G L VG + + + R+ AP GL Sbjct: 183 PFIQIEVQASGFLYGMMRLLLGLLVEVGAQARSLENFTDIWVHERRELVKYSAPARGLCL 242 Query: 242 DSVEY 246 V Y Sbjct: 243 LRVGY 247 >gi|269796221|ref|YP_003315676.1| pseudouridylate synthase I [Sanguibacter keddieii DSM 10542] gi|269098406|gb|ACZ22842.1| pseudouridylate synthase I [Sanguibacter keddieii DSM 10542] Length = 287 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 122/270 (45%), Gaps = 34/270 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +IR + + Y G+ + GW Q ++QG++E+ + V + AGRTD+GVH+ Q Sbjct: 4 VIRIRLDVSYRGTDFAGWAVQPGLRTVQGTLEEGLARVLRADTRLTVAGRTDAGVHSRGQ 63 Query: 61 VAHFDLVRE-WVPV----------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 V H D+ RE W V L + L + + +S+ F ARFSA+ Sbjct: 64 VTHLDVPREVWDTVSGRGHRTGEQALLSRMTGVLPTD--VVVRAVSVAPPGFDARFSALS 121 Query: 110 RSYLYRIITRQA---PLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 R Y YRI+ R A PL + W++ + LD + M+ A Q LVG DF F C+ Sbjct: 122 RRYRYRIVDRHALRDPLRAD----WVLWSKRPLDVDAMQAAVQPLVGVRDFKAF----CR 173 Query: 165 ASSPIRTIDHF--------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 TI H D L+ V + +F H +R+ VG+ VG G+ Sbjct: 174 PRPGATTIRHLQELTWERVDGGPDDGLVVASVRSDAFCHNMVRALVGASMAVGHGQRPVG 233 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L+ +R + PP GL + VEY Sbjct: 234 WPAEVLRRGERDPLAGVVPPHGLTLEEVEY 263 >gi|220917510|ref|YP_002492814.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] gi|219955364|gb|ACL65748.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] Length = 272 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 20/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL QV Sbjct: 6 YALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GVRAQLHVAARTDAGVHALAQVVS 64 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F PV L LN L + I +L+ + V FHAR SAI R+Y+Y ++ P+ Sbjct: 65 FSARAALDPVALRGGLNEGLP--EGILVLDAARVGPSFHARGSAIARTYVY-LVGAPPPV 121 Query: 124 ALEKGRAWLIPKS-----------LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 L + AW +P + LD MR A H VG HDF F Q + +RT+ Sbjct: 122 GL-RPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFARPGEQRGT-VRTL 179 Query: 173 DHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +V G L+ + + + FL +R+ VG+ G G+ D+ + L A + Sbjct: 180 LRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGR-APPDVIRTLLATRGRYR 238 Query: 231 GPLAPPEGLYFDSVEYS 247 G AP GL +V Y Sbjct: 239 GVRAPGWGLTLAAVRYP 255 >gi|291567810|dbj|BAI90082.1| tRNA pseudouridine synthase A [Arthrospira platensis NIES-39] Length = 278 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 118/249 (47%), Gaps = 8/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R +II+Y+G+ + GWQRQ N ++Q IE AI ++ E V +H AGRTDSGVHA QV Sbjct: 6 RIALIIQYDGTHFHGWQRQPNQRTVQEDIETAISKVLKQERVPLHAAGRTDSGVHAAAQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD LN ++ + I + V +HARF A R Y Y + T Sbjct: 66 AHFDAPAHIPAYRWATILNG--RLPADVLIRASAPVPSDWHARFDAQWRRYRYSLYTDAR 123 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + LD M A + L+G H + F+ +S P +D DV + Sbjct: 124 PNLFIRQFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQR--AGSSRPHAWVDVQDVECW 181 Query: 181 GN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I I V A FL+ +R VG L VG + + + + + R+ APP+G Sbjct: 182 RSEAFIHIEVQASGFLYGMMRLLVGLLVQVGAKERSLENFQDIWVNERREIVKSAAPPQG 241 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 242 LCLLRVGYP 250 >gi|284053328|ref|ZP_06383538.1| tRNA pseudouridine synthase A [Arthrospira platensis str. Paraca] Length = 278 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 118/249 (47%), Gaps = 8/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R +II+Y+G+ + GWQRQ N ++Q IE AI ++ E V +H AGRTDSGVHA QV Sbjct: 6 RIALIIQYDGTHFHGWQRQPNQRTVQEDIETAISKVLKQERVPLHAAGRTDSGVHAAAQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD LN ++ + I + V +HARF A R Y Y + T Sbjct: 66 AHFDAPAHIPAYRWATILNG--RLPADVLIRASAPVPSDWHARFDAQWRRYRYSLYTDAR 123 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + LD M A + L+G H + F+ +S P +D DV + Sbjct: 124 PNLFIREFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQR--AGSSRPHAWVDVQDVECW 181 Query: 181 GN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I I V A FL+ +R VG L VG + + + + + R+ APP+G Sbjct: 182 RSEAFIHIEVQASGFLYGMMRLLVGLLVQVGAKERSLENFQDIWVNERREIVKSAAPPQG 241 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 242 LCLLRVGYP 250 >gi|325262993|ref|ZP_08129729.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324032087|gb|EGB93366.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 244 Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 8/244 (3%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 +++EY+G+ Y GWQR G S + + + I +T E V + RT+ GVHA QV Sbjct: 6 LVLEYDGARYQGWQRLGKGESTNTVANKLLEVIHKMTAEDVELFCGARTEVGVHAYGQVV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + + + LN YL + I++L+ + ++FHA +A R+Y YRI P Sbjct: 66 NFKTTSDMKTDEIRQYLNRYLPMD--IAVLSAEEMPERFHASLNAKSRTYQYRIAIGAVP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + ++ D M+ AA L GRHDF F ++ ++ S + I + D+ + Sbjct: 124 SVFNRKYTYYAFRTPDIGIMQQAALLLAGRHDFKNFSTVK-KSKSTEKEIYNIDIYGDTD 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I+I + A FLH R +G+L +G GK +E + ++ E P+G++ Sbjct: 183 EIQISLRANDFLHNMPRMIIGTLMDIGLGKRKMECIEAIFKGEE--EASAPCDPKGMFLK 240 Query: 243 SVEY 246 +V Y Sbjct: 241 NVGY 244 >gi|284033969|ref|YP_003383900.1| tRNA pseudouridine synthase A [Kribbella flavida DSM 17836] gi|283813262|gb|ADB35101.1| tRNA pseudouridine synthase A [Kribbella flavida DSM 17836] Length = 270 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 126/253 (49%), Gaps = 15/253 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALR 59 +R+ + + Y+G+ + GW RQ ++QG++E+A+ L + V AGRTD+GVHA Sbjct: 1 MRWRIDLRYDGTEFHGWARQDGLRTVQGALEEALGTVLRLPDRPAVTCAGRTDTGVHARG 60 Query: 60 QVAHFDLVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV H DL VPV L + LN L D +++ ++ F ARFSA+ R Y+YR+ Sbjct: 61 QVTHVDLD---VPVTGRDLLRRLNGVL--PDDVAVTAVAEAADGFDARFSALARRYVYRL 115 Query: 117 ITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 PL + + P LD + M AA L+G HDF F AS+ ++ Sbjct: 116 CDDAVGWDPLRRREVLRVVRP--LDVDRMNAAAAQLLGEHDFAAFCKKREGASTVRALLE 173 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + V L++ V+A +F H+ +R+ VG+L VGDG+ L + R + Sbjct: 174 YSWVRVGPGLLDGTVIADAFCHSMVRALVGALIPVGDGRRDVDWPAAVLAGKMRDSAVAV 233 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 234 LPAHGLTLEEVRY 246 >gi|78189343|ref|YP_379681.1| tRNA pseudouridine synthase A [Chlorobium chlorochromatii CaD3] gi|123757011|sp|Q3AQT7|TRUA_CHLCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78171542|gb|ABB28638.1| tRNA pseudouridine synthase [Chlorobium chlorochromatii CaD3] Length = 243 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 114/240 (47%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 IEY+G+ + GWQRQ ++QG+IEK + +T E V+++GAGRTD GVHA +QVA L Sbjct: 8 IEYDGTDFAGWQRQSGTIPTVQGTIEKLLSQITQEEVLLNGAGRTDKGVHARQQVASCAL 67 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 L +LN L TI I N V FHARFSA R+Y Y + P AL Sbjct: 68 HSSMELSRLAHSLNCLLP--PTIRICNAVHVTDDFHARFSATERTYRY--FVSETPSALC 123 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 LD M+ A +VG HDFT F + + + + ++ + Sbjct: 124 NRFTGCANALLDVGVMQQMAAMVVGEHDFTAFSREERDSPAKRCKVTSCRWHRLHGMVVL 183 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ A FL + +R V ++ G G+ T + +++ AP GL+ + Y Sbjct: 184 QISANRFLRSMVRYLVHAMLQGGKGRLAPTLFQDMVESGTSSYRMVAAPASGLFLWRIGY 243 >gi|322374719|ref|ZP_08049233.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] gi|321280219|gb|EFX57258.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] Length = 163 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 5/163 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAIAVHGAGRTDSGVHALE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + I+ R Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEF-IVDR 117 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 P + + A P LD E M+ A + L G HDFT + + Sbjct: 118 GRPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGLQHL 160 >gi|239929485|ref|ZP_04686438.1| tRNA pseudouridine synthase A [Streptomyces ghanaensis ATCC 14672] gi|291437810|ref|ZP_06577200.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672] gi|291340705|gb|EFE67661.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672] Length = 284 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 119/253 (47%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+G+ GW +Q G ++QG +E A+ VT G + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGAGFHGWAKQAGGRRTVQGEVEDALRTVTRSGTTYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDL-VREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QVAH DL W L K L ++ + + L F ARFSA+ R Y YR Sbjct: 70 GQVAHVDLPAGVWAEHKGKLLKRLAG--RLPKDVRVWALREAPAGFDARFSAVWRRYAYR 127 Query: 116 IITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 128 VTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAY-CKRREGATTIRTLQE 186 Query: 175 FD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V ++ V A +F H +RS +G+L VGDG K L A R + Sbjct: 187 LSLVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRPPDWPGKVLAAGVRDSAVHV 246 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 VRPHGLTLEEVGY 259 >gi|301167543|emb|CBW27126.1| putative tRNA pseudouridine synthase [Bacteriovorax marinus SJ] Length = 267 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 15/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVA 62 Y + YNG YFGWQ+QKN +IQ +IE A+ ++ E + G+ RTD+GVH+ V Sbjct: 5 YNAEVHYNGENYFGWQKQKNFKTIQDTIEDALRVIAPSEKIRTMGSSRTDTGVHSRANVC 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + P L K LN L + I I + F + A R+ YLY + Sbjct: 65 FIQIQEDLEPHELTKKLNQEL--PNDIRITKCERTYRHFKVVYFAKRKQYLYIFKINNSD 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI---------D 173 + I ++LD E M+ AA+ +G HDF F + R I D Sbjct: 123 HST---FYHSIEENLDIEKMKEAAKVFIGTHDFRNFCHKVSENVDKKREIFECKIIEDQD 179 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 N+ + + FL +R +GSL +G GK T + +++AL + + K+ G + Sbjct: 180 FISENNCHGSYALVIEGSGFLKQMVRIIMGSLINIGLGKTTLSQIQEALVSTEFKKTGFI 239 Query: 234 APPEGLYFDSVEY 246 AP GLY + +E+ Sbjct: 240 APGGGLYLNEIEF 252 >gi|41410333|ref|NP_963169.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp. paratuberculosis K-10] gi|51316707|sp|Q73S41|TRUA_MYCPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41399167|gb|AAS06785.1| TruA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 251 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 22/237 (9%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI------------ 74 + G +++A+ V V + AGRTD+GVHA QVAH D+ +P Sbjct: 1 MAGVLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEF 60 Query: 75 --LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR--- 129 L + L +L + +++++ F ARFSA+RR Y+YR+ T + ++ R Sbjct: 61 GPLLRRLGRFLPTD--VRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVT 118 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 AW P+ LD E M A++ L+G HDF F H + ++ IR + D G+LI RV Sbjct: 119 AW--PRPLDVEAMAAASRDLLGLHDFAAF-CRHRENATTIRDLQRLDWTRDGDLITARVS 175 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A +F + +RS VG+L VG+ + + + L A +R AP GL V+Y Sbjct: 176 ADAFCWSMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDY 232 >gi|320009073|gb|ADW03923.1| tRNA pseudouridine synthase A [Streptomyces flavogriseus ATCC 33331] Length = 284 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 124/253 (49%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVRE-WV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL E W L + + L + + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPAEVWAEHEEKLLRRMAGRLPLD--VRIWRAAEAPAGFNARFSALWRRYAYRV 127 Query: 117 ITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID-- 173 R + L +G + LD + M AA + G HDF + + ++ IRT+ Sbjct: 128 GDRPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMTGEHDFAAY-CKKREGATTIRTLQRL 186 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 H+ ++ ++ V A +F H +R+ +G+ VGDG+ + + L A+ R + Sbjct: 187 HWVRDAESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAGWPAEVLAAKVRDPAVHV 246 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 VRPHGLTLEEVAY 259 >gi|291298744|ref|YP_003510022.1| tRNA pseudouridine synthase A [Stackebrandtia nassauensis DSM 44728] gi|290567964|gb|ADD40929.1| tRNA pseudouridine synthase A [Stackebrandtia nassauensis DSM 44728] Length = 300 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 20/257 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++R + I Y+G+ + GW Q ++ G + A+ + G+ + AGRTD+GVHA Q Sbjct: 21 LVRLRLDICYDGTDFAGWAFQPGQRTVAGEVFTALSALFGQPEGLTVAGRTDAGVHATGQ 80 Query: 61 VAHFDL-VREWV-----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAH D+ W P+ + + + + I ++ V +F+ARFSA+ R Y+Y Sbjct: 81 VAHVDVPAAAWARYRDRPLWRLRGI-----LPPDVRITAITEVSSEFNARFSALSRRYVY 135 Query: 115 RI---ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPI 169 R+ + PL AW P+ +D + M AA LVG HDF F R + Sbjct: 136 RVADTVWGVNPLRRLDTVAW--PRPVDLDVMNAAATVLVGEHDFAAFCKRREGATTVRAL 193 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 RT+ +D ++ G + VVA +F H+ +RS VG++ VG+G+ + L L +R Sbjct: 194 RTV-RWDRDADG-IARATVVADAFCHSMVRSLVGAMLAVGEGRRDAAWLAALLTRGERSG 251 Query: 230 CGPLAPPEGLYFDSVEY 246 +AP GL VE+ Sbjct: 252 EVLVAPANGLTLVEVEF 268 >gi|194334164|ref|YP_002016024.1| tRNA pseudouridine synthase A [Prosthecochloris aestuarii DSM 271] gi|194311982|gb|ACF46377.1| tRNA pseudouridine synthase A [Prosthecochloris aestuarii DSM 271] Length = 237 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 119/244 (48%), Gaps = 12/244 (4%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MIIEY+G+ + GWQRQ S++QG IE + + E V + GAGRTD GVHA+ Q A F Sbjct: 1 MIIEYDGTDFAGWQRQDGAVSTVQGEIEAVLRRILQEAVSITGAGRTDKGVHAMGQAASF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 LC +LN+ L S I I++L VD FHAR+SA+ R Y Y + RQ A Sbjct: 61 MTGSSMEAGRLCHSLNSLLPSS--IRIMSLIDVDGDFHARYSALSRQYRY--MLRQRESA 116 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + + S D + + A L+GRHDF F + T+ + Sbjct: 117 IFRRFSGYDRASHDLDQLNSRASVLLGRHDFKAFSKSGSDTRTTCCTVSEAQWFREKEFL 176 Query: 185 EIRVVARSFLHTQIRSFV-GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 ++ A FL + +R V +L+ G+ ++ AL ++ + A P GL+ Sbjct: 177 VFQISANRFLRSMVRYLVSATLRFSGE------EISYALVSRQPIKGLLPADPAGLFLWE 230 Query: 244 VEYS 247 + Y+ Sbjct: 231 IGYA 234 >gi|88854648|ref|ZP_01129314.1| tRNA pseudouridine synthase A [marine actinobacterium PHSC20C1] gi|88815809|gb|EAR25665.1| tRNA pseudouridine synthase A [marine actinobacterium PHSC20C1] Length = 315 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 30/270 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA---IFLVTGEIVVVHGAGRTDSGVHALR 59 R + I Y+G+ + GW +Q + ++QG+IE A IF G + + AGRTD+GVHA Sbjct: 29 RMRLDIAYDGTDFAGWGKQPSLRTVQGTIEDALGVIFRRFGAVPSLVVAGRTDAGVHASG 88 Query: 60 QVAHFDLVREWV------------------PVILCKALNAYLKISDTISILNLSIVDKQF 101 QVAH DL + P L + +N + I + +I F Sbjct: 89 QVAHLDLTDAQLISLDRPRRGNLRGKRYDGPASLARRINGIAGLEADIFLSRSAIAADGF 148 Query: 102 HARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 ARFS + R Y YRI +P ++ P +LD + M IA+ L+G HD+ + Sbjct: 149 DARFSPLWRRYEYRIADNASPRDPRQRNHTVWYPATLDVDAMNIASDELLGLHDWAAYCK 208 Query: 161 IHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + ++ +R+++ F+ V + +I + A +F H+ +RS VG+ VG GK +++ Sbjct: 209 PR-EGATTVRSLERFNWVRNEEGIIVAELRADAFCHSMVRSLVGAGVFVGQGK---LEVD 264 Query: 220 KALQAQDRKECG---PLAPPEGLYFDSVEY 246 + ++ +D + G + P +GL V Y Sbjct: 265 RPVEIRDERSKGSEYKVMPAKGLTLVEVGY 294 >gi|327398248|ref|YP_004339117.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411] gi|327180877|gb|AEA33058.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411] Length = 241 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 3/204 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RYC I Y+G+ Y G+Q Q + ++QG IEKA+ + + ++ AGRTD+GVHA QV Sbjct: 1 MRYCACIAYDGTNYSGFQIQPDVKTVQGEIEKALKRIFKTDLRINFAGRTDAGVHAFEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F ++ + L KALN+ L + I I ++ IVD FH+R+SA R Y+Y + Sbjct: 61 IDFPVIADIETYSLKKALNSVL--PEDIRIKSVKIVDNSFHSRYSAKFREYVYFAFDGEY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 W + LD + MR+A++ VG DF +F + + + R + + + Sbjct: 119 LPPFLCRYVWHVKFKLDVDAMRLASRLFVGYKDF-SFVANEPEGKNCTREVYFLRIKRYR 177 Query: 182 NLIEIRVVARSFLHTQIRSFVGSL 205 + + A FL +R+ VG L Sbjct: 178 EFVVFHIRAGGFLRGMVRNIVGLL 201 >gi|227487069|ref|ZP_03917385.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227541767|ref|ZP_03971816.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51866] gi|227093143|gb|EEI28455.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227182473|gb|EEI63445.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51866] Length = 284 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 20/256 (7%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQVAHF 64 I Y+G+ + GW QK G ++Q +IE+A+ LV + + AGRTD+GVHA QVA+ Sbjct: 9 IAYDGTNFHGWATQKGGLRTVQQTIEEALRLVLRLDDSYQLTVAGRTDAGVHATGQVANM 68 Query: 65 DLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 + + P L + LN L D IS+L +S + F ARF A+RR Y YR+ Sbjct: 69 VVPESCLEQRSIDGDPARLTRRLNKLLP--DDISLLAVSAAPEAFDARFGALRRYYEYRV 126 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 TR PL L + K +D + + A VG HDF H ++ IRT++ F Sbjct: 127 TTRPGGPLPLRRFDTATWKKPVDIDVVSACASAFVGLHDFAAL-CKHKPHATTIRTVETF 185 Query: 176 DVNSFGNLIE-----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 E +V A +F + +RS VG+ VG+G+ + L ++R Sbjct: 186 TWEDISTPCEPQTYLAKVSADAFCWSMVRSLVGACLAVGEGRRDLSFAPHLLTLKERAAD 245 Query: 231 GPLAPPEGLYFDSVEY 246 P+A GL V+Y Sbjct: 246 VPVASACGLTLTGVDY 261 >gi|289706561|ref|ZP_06502911.1| tRNA pseudouridine synthase A [Micrococcus luteus SK58] gi|289556696|gb|EFD50037.1| tRNA pseudouridine synthase A [Micrococcus luteus SK58] Length = 297 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 125/263 (47%), Gaps = 20/263 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW RQ S+QG++E + + V AGRTD+GVHA QV Sbjct: 19 VRVRLDLAYDGGAFHGWARQPGLDSVQGALEDGLERILRRPVRTVVAGRTDAGVHARGQV 78 Query: 62 AHFDLVR-EWVPVI-----LCKALNAYLKISDTISILNLSIV-------DKQFHARFSAI 108 AH DL EW + L A + ++ +S ++V F ARFSA+ Sbjct: 79 AHLDLTETEWAGLTRGRPGLEPAASLTRRLGGVLSGWGGAVVVHGAGRAPAGFDARFSAL 138 Query: 109 RRSYLYRIITRQAPLALE---KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R Y YRI AP A + +G +LD M + A ++G HDF +F A Sbjct: 139 WREYEYRID--DAPAARDPRTRGFTHWHGAALDDRLMALEADAVLGLHDFLSFCRPRAGA 196 Query: 166 SSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + H +V ++ +R+ A +F H +R+ VG+L VG+G L + + Sbjct: 197 TT-IREVQHLEVRRDEDGVVRVRIRADAFCHNMVRAIVGALLQVGEGAREPGWLARRVAR 255 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 R LAPP GL +V Y Sbjct: 256 PARDSEVRLAPPGGLTLLAVGYP 278 >gi|24212680|sp|Q9X796|TRUA_MYCLE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 286 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 127/264 (48%), Gaps = 27/264 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A V V + AGRTD+GVHA QV Sbjct: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAG-LDEAFTTVFRTPVRLRAAGRTDTGVHATGQV 69 Query: 62 AHFDLVREWV------------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ + P L + + +L+++ F ARFSA+R Sbjct: 70 AHVDIPGTALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVRVLDIACAPVGFDARFSALR 129 Query: 110 RSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R Y YR+ T AP ++ +A + P+ LD ++M A++ L+G DF F H + Sbjct: 130 RHYRYRLST--APYGVQPNQARYVTAWPRELDLDSMSAASRDLLGLRDFAVF-CRHRHGA 186 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKAL 222 + IR + + + G LI + A +F + +RS +G+L VGD + W L KA Sbjct: 187 TTIRELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGDHRRTIGWCGELLTKAS 246 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 ++ D AP GL F V+Y Sbjct: 247 RSSDFTT----APAHGLTFIRVDY 266 >gi|115375174|ref|ZP_01462441.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] gi|115367825|gb|EAU66793.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 221 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 98/200 (49%), Gaps = 3/200 (1%) Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 AGRTDSGVHA QV FD R+ + LN L + I+++ V F R + Sbjct: 4 AGRTDSGVHATGQVVCFDTERQLPLKAYHRGLNGLLP--EDIAVVRAEEVSAAFDPRRWS 61 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 + Y YR+ + L + W I L E M AA L+GRHD++ FR+ CQA+ Sbjct: 62 RGKRYRYRVSNLPSRSPLRRHTHWEIYAPLQVEAMARAATSLLGRHDYSAFRASDCQAAH 121 Query: 168 PIRTIDHFDVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 +R + V + G+ + V +FL +R+ VG+L VG G+ + + L + D Sbjct: 122 AVREVRRLSVEGTPGDAVAFVVEGTAFLKHMVRNLVGTLVEVGKGRRPEAWVAEVLASGD 181 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R GP APP GL + V Y Sbjct: 182 RTLAGPTAPPHGLVLEEVFY 201 >gi|21673806|ref|NP_661871.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS] gi|42559829|sp|Q8KDR7|TRUA_CHLTE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21646936|gb|AAM72213.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS] Length = 247 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 109/242 (45%), Gaps = 5/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M IEY+G+GY GWQRQ ++QG IE+ + + E V + GAGRTDSGVHA RQVA F Sbjct: 10 MQIEYDGTGYSGWQRQPGDVVTVQGEIERVLERIMQEPVSIDGAGRTDSGVHARRQVASF 69 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L + N+ L TI I + + FHARFSA R Y Y ++ + P A Sbjct: 70 ATCSPMPLGRLIYSANSLLP--STIRINAMRQAPESFHARFSATSREYRYFLL--EHPSA 125 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ A D M A L+G HDF F + T+ G Sbjct: 126 IDSRFAGCSHGKPDVGAMNRLALMLIGTHDFAAFSKETPDQYGTLCTVTAARWYRSGRFH 185 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A FL + +R V + VG G+ + L++ R A GL+ V Sbjct: 186 VFRIEANRFLRSMVRFLVAGMIEVGMGRLEEGAFARMLESGHRPPKLKPADAAGLFLWKV 245 Query: 245 EY 246 Y Sbjct: 246 RY 247 >gi|282860840|ref|ZP_06269906.1| tRNA pseudouridine synthase A [Streptomyces sp. ACTE] gi|282564576|gb|EFB70112.1| tRNA pseudouridine synthase A [Streptomyces sp. ACTE] Length = 284 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTGRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDL-VREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL V W L + + L + + I F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPVEVWAEHREKLLRRMAGRLPLD--VRIWRAEEAPAGFNARFSALWRRYAYRV 127 Query: 117 ITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID-- 173 R + L +G + LD + M AA + G HDF + + ++ IRT+ Sbjct: 128 GDRPGGVDPLTRGHVLWHDRPLDLDAMNEAAARMTGEHDFAAY-CKKREGATTIRTLQKL 186 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 H+ + ++ V A +F H +R+ +G+ VGDG+ + + L A+ R + Sbjct: 187 HWVRDGESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAGWPAEVLAARVRDPAVHV 246 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 VRPHGLTLEEVAY 259 >gi|319654901|ref|ZP_08008976.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2] gi|317393464|gb|EFV74227.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2] Length = 269 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R+ I Y+G+ + G+Q Q ++QG +E+A+ L GE + V +GRTD+GVHA Sbjct: 1 MQRFKCNITYDGTHFAGYQVQPGKRTVQGELERALKKLHKGEDIKVTASGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI-- 116 QV HFD +P+ + ALN+ L D ++I+ V FH RF A + Y Y + Sbjct: 61 QVIHFDSPLN-IPIEKWEIALNSLL--PDEVAIVGAETVPDDFHVRFDAKGKEYRYFVHC 117 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +R+ P + P L+ + ++ AA L+G HDFT+F S + +R + + Sbjct: 118 SSRRDPFKRHYAYQYSYP--LNTDAIKQAAADLIGTHDFTSFCSAKTEVEDKVRELQEIE 175 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 V +++ R FL+ +R G+L VG G+ + L+ + Sbjct: 176 VQEKEDMLIFRFRGTGFLYNMVRILAGTLLEVGSGERDPDSMPSVLKEK 224 >gi|260906021|ref|ZP_05914343.1| pseudouridylate synthase I [Brevibacterium linens BL2] Length = 284 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 130/274 (47%), Gaps = 38/274 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + Y G+ + GW +Q ++Q S+E + +TG V AGRTD+GVHA RQ Sbjct: 1 MTRFRIDLGYRGTDFHGWAKQPGLRTVQDSLEAGLSRITGAEVATIVAGRTDAGVHARRQ 60 Query: 61 VAHFDLVREWVPVILCKA-----------LNAYLKISDT--ISILNLSIVDKQFHARFSA 107 V H DL E + ++ K+ L L + DT I I +S V + F ARFSA Sbjct: 61 VVHIDLAEEGIEKLIGKSSRPAEAALLSRLRGVLTVDDTDDIVIHAVSEVPEDFDARFSA 120 Query: 108 IRRSYLYRIITRQA---PLALEKGRAWLIPK---SLDCENMRIAAQHLVGRHDFTTFRSI 161 + R+Y YR+ R++ PL + P+ LD E M AA+ G HDF F Sbjct: 121 LWRTYQYRLADRRSFIDPLLTP-----VTPRHKGELDAEAMAEAAREAQGLHDFIPF--- 172 Query: 162 HC---QASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 C + ++ IRT+ +V +I I + A +F H +R+ VG L VG G W T Sbjct: 173 -CKPREGATTIRTLHELEVTRDQEAVITIDLRADAFCHHMVRALVGGLIKVGSGTWPVTR 231 Query: 218 LEKALQAQDRKECGP-----LAPPEGLYFDSVEY 246 + L D P ++P GL V Y Sbjct: 232 PAELLTEAD-SGVDPDVPMFVSPAHGLVLTGVGY 264 >gi|153824082|ref|ZP_01976749.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|126518399|gb|EAZ75622.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] Length = 205 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 94/187 (50%), Gaps = 4/187 (2%) Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 + HFD E V NA + I++ V +FHARFSA R Y Y I Sbjct: 1 MVHFDTTAERQMVAWTMGANA--NLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHV 58 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L G + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 59 YRPGILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTR 117 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGL Sbjct: 118 HGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGL 177 Query: 240 YFDSVEY 246 Y SV+Y Sbjct: 178 YLVSVDY 184 >gi|194208171|ref|XP_001496445.2| PREDICTED: similar to LOC617640 protein [Equus caballus] Length = 389 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 29/246 (11%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR-----EWVPVILCKALN 80 S Q + E+ +V ++ + + RTD+GVHAL AH D+ R + P +L KALN Sbjct: 128 SPQEAAERLNSVVPVKLTI---SSRTDAGVHALSNAAHLDVQRRSGQPPFSPEVLAKALN 184 Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-QAPLAL---EKGRAW-LIPK 135 +L+ I +L V FHAR+SA R+YLYR+ T P L E+ R W L Sbjct: 185 THLR-HPAIRVLQAFRVPSDFHARYSATSRTYLYRLATGCPQPDQLSVFEQNRCWALRAD 243 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-----NSFGNLIEIRVV- 189 SLD M AAQHL+G HDF+ F+S +S +RT+ V + F E R + Sbjct: 244 SLDVAAMEEAAQHLLGTHDFSAFQSAGSPTTSSVRTLRRASVSPDLPSPFVLPQESRRLR 303 Query: 190 -------ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLY 240 ++SFL+ Q+R L VG G T ++ L+++D + +AP GL+ Sbjct: 304 FWSLEFESQSFLYRQVRRMTAVLVAVGLGALTPAQVKMILESRDPLGRHQTRVAPAHGLF 363 Query: 241 FDSVEY 246 SV Y Sbjct: 364 LKSVLY 369 >gi|153807552|ref|ZP_01960220.1| hypothetical protein BACCAC_01832 [Bacteroides caccae ATCC 43185] gi|149129914|gb|EDM21126.1| hypothetical protein BACCAC_01832 [Bacteroides caccae ATCC 43185] Length = 220 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 105/211 (49%), Gaps = 12/211 (5%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 EI VV GAGRTD+GVHA VAHFD V + + LN L IS+ + V + Sbjct: 11 EIEVV-GAGRTDAGVHASLMVAHFDYDGLLDTVSVAEKLNRLLPPD--ISVYRVCRVKPE 67 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 HARF A R+Y Y + + P + W I SLD E M AA+ L DFT+F Sbjct: 68 AHARFDATARTYKYYVTAVKYPF--NRQYRWRIYSSLDYERMNEAARTLFEYSDFTSFSK 125 Query: 161 IHCQASSPIRTIDHFDVNSFGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +H + I I H + + + IR A FL +R+ VG+L VG GK + Sbjct: 126 LHTDVKTNICHITHAEWTKVTDDEATWVFTIR--ADRFLRNMVRAIVGTLIEVGRGKLSV 183 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 D + ++ QDR + G AP + L+ +VEY Sbjct: 184 EDFRRIIEQQDRCKAGTSAPGQALFLVNVEY 214 >gi|294621109|ref|ZP_06700300.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291599345|gb|EFF30371.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] Length = 165 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 3/159 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + + A P LD E ++ A L+G HDFT+F Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF 157 >gi|325191328|emb|CCA26111.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 289 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 23/262 (8%) Query: 7 IIEYNGSGYFGWQRQ-KNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 II Y+G+ Y G+Q Q K G+ ++Q +IE AIF TGE V + RTD GVHA QV F Sbjct: 30 IIAYDGTDYNGFQAQGKEGTITLQEAIEDAIFRTTGEAVRIRACSRTDRGVHARGQVIVF 89 Query: 65 DLVREWVPVILCKALNAYLKISDTISILN---LSIVDKQFHARFSAIRRSYLYRIITRQA 121 D + L ALN+ ++ D I+ L LSI + R +I + Y YRI++ Sbjct: 90 DTLCTADAEKLRDALNS--RLDDAIACLQVVPLSISSDRMDPRKLSIGKEYEYRIVSGGV 147 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRH--DFTTF---RSIHCQASSPIRTIDHFD 176 E+ + W + + +D ++M+ AAQ L R D+ +F R + + T+ D Sbjct: 148 RPVHERFQVWFVRQLVDIKSMKQAAQLLFHREKRDYASFSGERDDAKEGTDTFCTLHALD 207 Query: 177 V-----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + + + I IR+ FL+ +R+ VG+L VG GK + + L A+ Sbjct: 208 ITMDQPRQEVMNHGQQSCIRIRMSGDRFLYKMVRNIVGTLVDVGLGKIDALSIPDILLAR 267 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DR++ G AP +GL V +S Sbjct: 268 DRRQAGQGAPAKGLTLVRVYFS 289 >gi|148238745|ref|YP_001224132.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7803] gi|147847284|emb|CAK22835.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7803] Length = 297 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 116/244 (47%), Gaps = 14/244 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y GS + GWQRQ+ G+S+QG +E+AI L V AGRTD+GVHA QV Sbjct: 23 RIAISLQYAGSFFCGWQRQRQGTSVQGVLEQAIADLDPHRPVHAVAAGRTDAGVHAAGQV 82 Query: 62 AHFD-----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD W P ALN L S I + +HA +SA R Y Y + Sbjct: 83 VHFDSSGPIPASRWAP-----ALNGRLPAS--IRVREAVERPLSWHACYSATYRRYRYTL 135 Query: 117 ITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + P W LD + M A + ++G HDF F+ + + TI Sbjct: 136 YNGRRPNLFLAPWTWHRYQARLDEQAMAAALEGMLGSHDFAAFQRAGSRRAHSRTTIQDV 195 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G+LI++ V A FL+ +R +G L VG+ + T E+ + + R E AP Sbjct: 196 SVQRRGDLIDLEVQASGFLYGMVRLMMGQLVAVGEHRLTPDQFERRWRERRRDEVKDGAP 255 Query: 236 PEGL 239 P+GL Sbjct: 256 PQGL 259 >gi|311115139|ref|YP_003986360.1| tRNA-pseudouridine synthase I [Gardnerella vaginalis ATCC 14019] gi|310946633|gb|ADP39337.1| tRNA-pseudouridine synthase I [Gardnerella vaginalis ATCC 14019] Length = 310 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 137/300 (45%), Gaps = 68/300 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG-----------AGR 50 +R + + Y+G ++GW RQ N ++QG++E A++ +++ VH AGR Sbjct: 1 MRLRLDLAYDGGDFYGWARQPNLRTVQGTLEDALY----KVLRVHDGDSCFPLRLTVAGR 56 Query: 51 TDSGVHALRQVAHFDLVRE----------WVPVILCKALNAYLK--ISDTISILNLSIVD 98 TD+GVHA QV H D+ + PV KAL L+ + ISI ++SI Sbjct: 57 TDTGVHASYQVCHLDVEDDILQNCVGHTNLTPV---KALEYRLRGVLPKDISIHSVSIAP 113 Query: 99 KQFHARFSAIRRSYLYRI---ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 F ARFSA+ R+Y+YRI R+ +G I LD +M AAQ +VG HDF Sbjct: 114 SGFDARFSALDRTYVYRISDAANRENLDPRMRGFVLQIDYDLDVNSMNQAAQMIVGLHDF 173 Query: 156 TTF-------RSIHC-----------QASSPIRTIDHFDVNSFGN-------LIEIRVVA 190 +F +I C +P+ + S GN LIE +VA Sbjct: 174 GSFARPNPGGTTIRCVKKAVWNRVCLDGCAPVGS--SIASRSTGNIPPIEHGLIEFTIVA 231 Query: 191 RSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +F H +RS V + VG GK W +E ++ GP+A GL + VEY Sbjct: 232 DAFAHNMVRSLVQACVQVGCGKRSVDWFKDKIENPIR---EGSTGPIA-SNGLTLEYVEY 287 >gi|159469598|ref|XP_001692950.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158277752|gb|EDP03519.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 239 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 112/239 (46%), Gaps = 16/239 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHAL 58 + Y +I+ Y+G+ Y GWQ Q ++Q +E A+ V E ++ V AGRTDSGVHA Sbjct: 3 LSYRLILAYDGTDYCGWQLQPAAPTVQAKLEAALGTVLREDRGVLGVRAAGRTDSGVHAR 62 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV R +PV L LNA L I ++ + F S I ++Y Y I Sbjct: 63 GQVRTGLTGRGGLPVDKLAYKLNAVL--PPDIRVMGVRRTAPDFSVTCSPIGKTYHYNIT 120 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-----SPIRTI 172 +A L A+ + K LD MR AA LVG HDFT F +I + +P++T+ Sbjct: 121 NSEAHDPLRHRYAYHVRKPLDLAGMRAAAALLVGTHDFTQFSNIGEEGGRPRKRNPVKTL 180 Query: 173 DHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 DV +F + I V FL+ +R G L VG+ K + + L+ D Sbjct: 181 RRMDVVELDPAAFPGGVRIEVEGNGFLYKMVRHISGVLVAVGERKLPPGIVSEMLEVGD 239 >gi|87124988|ref|ZP_01080835.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9917] gi|86167308|gb|EAQ68568.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9917] Length = 274 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 113/239 (47%), Gaps = 14/239 (5%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 ++Y GS + GWQRQ+ G+S+QG +EKAI L V AGRTD+GVHA QV HFD Sbjct: 1 MQYEGSSFCGWQRQRQGTSVQGELEKAIAALDPHRPVQAVAAGRTDAGVHAAGQVVHFDC 60 Query: 67 -----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + W P ALN ++ TI + +HA SA R Y Y I + Sbjct: 61 CGPIPAQRWAP-----ALNG--RLPGTIRVREAVERPLHWHACHSASYRRYRYTIYNGRR 113 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +W LD + MR L+G HDF+ F + + T+ + Sbjct: 114 PNLFLAPWSWHRYHCRLDEDAMRRGLDGLIGSHDFSAFMRAGSRRAHARTTVQDVSLERQ 173 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++ + + A FL+ +R G L VG+ + E+ + + R+E APP+GL Sbjct: 174 GDVLILEIQASGFLYGMVRLLTGQLVAVGEHRLHPQAFEQRWRQRRRQEVKEAAPPQGL 232 >gi|118462566|ref|YP_883531.1| tRNA pseudouridine synthase A [Mycobacterium avium 104] gi|254776828|ref|ZP_05218344.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp. avium ATCC 25291] gi|118163853|gb|ABK64750.1| tRNA pseudouridine synthase A [Mycobacterium avium 104] Length = 251 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 22/237 (9%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI------------ 74 + G +++A+ V V + AGRTD+GVHA QVAH D+ +P Sbjct: 1 MAGVLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEF 60 Query: 75 --LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR--- 129 L + L +L + +++++ F ARFSA+RR Y+YR+ T + ++ R Sbjct: 61 GPLLRRLGRFLPTD--VRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVT 118 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 AW P+ LD E M A++ L+G HDF F H + ++ IR + D G+LI RV Sbjct: 119 AW--PRPLDVEAMAAASRDLLGLHDFAAF-CRHRENATTIRDLQRLDWTRDGDLIIARVS 175 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A +F + +RS VG+L VG+ + + + L A +R AP GL V+Y Sbjct: 176 ADAFCWSMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDY 232 >gi|302543331|ref|ZP_07295673.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus ATCC 53653] gi|302460949|gb|EFL24042.1| tRNA pseudouridine synthase A [Streptomyces himastatinicus ATCC 53653] Length = 283 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 117/251 (46%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW +Q+ ++QG +E A+ VT E + AGRTD+GVHA Sbjct: 9 FVRVRLDLSYDGKDFSGWAKQRERRTVQGELESALGTVTRSSETPDLTVAGRTDAGVHAR 68 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL E K L ++ + + ++ F+ARFSAI R Y YR++ Sbjct: 69 GQVAHVDLPEELWAEHRDKLLRRLAGRLPHDVRVWRVAAAPPGFNARFSAIWRRYAYRVV 128 Query: 118 TRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G LD + M A+ L+G HDF + A++ IRT+ Sbjct: 129 DHPGGVDPLLRGHVLWHDWPLDVDAMNAASAPLLGEHDFAAYCKRRDGATT-IRTLQKLS 187 Query: 177 VNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +I V A +F H +RS VG+L GDG K L A R + Sbjct: 188 WERGADGVITATVRADAFCHNMVRSLVGALLFTGDGHRPVDWPGKVLAAGVRDSAVHVVR 247 Query: 236 PEGLYFDSVEY 246 P GL + V Y Sbjct: 248 PHGLTLEEVGY 258 >gi|227549870|ref|ZP_03979919.1| tRNA-pseudouridine synthase I [Corynebacterium lipophiloflavum DSM 44291] gi|227078125|gb|EEI16088.1| tRNA-pseudouridine synthase I [Corynebacterium lipophiloflavum DSM 44291] Length = 285 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 122/266 (45%), Gaps = 25/266 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 +R + I Y+G+ + GW RQ+ +G+ ++Q +I+ A+ V V + AGRTD+GV Sbjct: 6 LRLRLDIAYDGTDFHGWARQREQPDGTPTRTVQQTIQSALSTVLRTPVELTVAGRTDAGV 65 Query: 56 HALRQVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 HA QVAH D+ + P L + L L + + +S V F ARFSA Sbjct: 66 HASGQVAHADIPAASLDQRSIDGDPARLVRRLAKLLPAD--VRVYGVSAVSPLFDARFSA 123 Query: 108 IRRSYLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + RSY+YR+ T A P W P +D M++AA VG HDF F Sbjct: 124 LTRSYVYRVTTHPAGALPTRARDTAVWRRP--VDIGAMQVAADAFVGLHDFAAFCRAKPH 181 Query: 165 ASSPIRTID----HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 A++ + ++ NL E V A +F +RS V + VG+G T +E Sbjct: 182 ATTVRKVVEMRWVEASTGEEPNLYEAHVTADAFCWNMVRSLVAACLQVGEGSKDPTWVEP 241 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 L R LAP +GL V Y Sbjct: 242 LLGETTRHPHVLLAPAKGLTLVDVSY 267 >gi|29831498|ref|NP_826132.1| tRNA pseudouridine synthase A [Streptomyces avermitilis MA-4680] gi|38258718|sp|Q82DM1|TRUA_STRAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|29608614|dbj|BAC72667.1| putative pseudouridine synthase [Streptomyces avermitilis MA-4680] Length = 285 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 121/255 (47%), Gaps = 12/255 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVV-VHGAGRTDSGVH 56 +R + + Y+G+ + GW +Q G ++QG IE A+ VT GE + AGRTD+GVH Sbjct: 9 FVRVRLDLSYDGTEFSGWAKQAAGRRTVQGEIEDALRTVTRSGETTYELTVAGRTDAGVH 68 Query: 57 ALRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 A QVAH DL E W L K L ++ + + +L+ F+ARFSAI R Y Sbjct: 69 ARGQVAHVDLPGELWAEHQEKLLKRLAG--RLPKDVRVWSLTEAPSGFNARFSAIWRRYA 126 Query: 114 YRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ + L + LD + M AA+ LVG HDF + + ++ IRT+ Sbjct: 127 YRVTDNTGGVDPLLRSHVLWHDWPLDVDAMNEAARRLVGEHDFAAYCKKR-EGATTIRTL 185 Query: 173 DHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 V +I V A +F H +RS +G+L VGDG K L R Sbjct: 186 QELSLVRGDDGVITATVCADAFCHNMVRSLIGALLFVGDGHRGPDWPGKVLAVGVRDSAV 245 Query: 232 PLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 246 HVVRPHGLTLEEVGY 260 >gi|297666734|ref|XP_002811665.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Pongo abelii] Length = 287 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 120/261 (45%), Gaps = 35/261 (13%) Query: 14 GYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR----- 68 G R GS +Q + E+ L + E V + RTD+GVHAL AH D+ R Sbjct: 15 GPASLTRPPRGSVLQEAAER---LNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRP 71 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT----RQAPLA 124 + P +L + LN +L+ I +L V FHAR +A R YLYR+ T R Sbjct: 72 PFPPEVLAEVLNRHLR-HPAIRVLRAFRVPSDFHARHAATSRIYLYRLATGCHRRDELPV 130 Query: 125 LEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---- 179 E+ W +P LD ++ AAQHL+G HDF+ F+S SP+RT+ V+ Sbjct: 131 FERNLCWALPADCLDVVAVQEAAQHLLGTHDFSAFQSTGSPVPSPVRTMRRVSVSPGQAS 190 Query: 180 ------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F NL ++SFL+ Q+R L VG G ++ L++QD Sbjct: 191 PLVTPEESRKLRFWNL---EFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDP 247 Query: 228 --KECGPLAPPEGLYFDSVEY 246 K +AP GL+ SV Y Sbjct: 248 LGKHQTRVAPAHGLFLKSVLY 268 >gi|195436014|ref|XP_002065973.1| GK25867, isoform B [Drosophila willistoni] gi|194162058|gb|EDW76959.1| GK25867, isoform B [Drosophila willistoni] Length = 313 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 134/303 (44%), Gaps = 58/303 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLDQPRLDTNSVQGCLELALRVFRPTNEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVR----EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTIHVDLERYDGQPYALTTLTGVLNRTLGKQRLPIRVLSTELVPDTFHCRY 119 Query: 106 SAIRRSYLYRI-ITRQAPL----ALEKGRAWLIP------------KSLDCENMRIAAQH 148 AI R+YLYR + R +P+ +G IP S D E +R AA+ Sbjct: 120 HAIGRTYLYRFAVARNSPVDDGKLKNRGYEAFIPVEELDRCYFLQAASFDIERVRSAARL 179 Query: 149 LVGRHDFTTFRSIHCQASSP-------IRTIDHFDV--------NSFGNLI-------EI 186 +G HDF TF S+ Q +R ID ++ N+ L EI Sbjct: 180 FLGIHDFRTFMSVSRQKGPSRDHPMFTVRKIDEINIRPGHSLALNAHAKLANETYDHWEI 239 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDS 243 + A+SFL+ Q+R VG+L +G GK + + L + P LAP GLY Sbjct: 240 EIKAKSFLYKQVRRIVGTLLALGTGKIDEKCIYQMLTIPSKNSWEPRILLAPACGLYLCQ 299 Query: 244 VEY 246 V Y Sbjct: 300 VHY 302 >gi|87300888|ref|ZP_01083730.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 5701] gi|87284759|gb|EAQ76711.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 5701] Length = 316 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 114/246 (46%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y GS + GWQRQ + S+Q ++E+A+ L + AGRTDSGVHA QV Sbjct: 12 RIALCLQYEGSSFCGWQRQPHQPSVQETLERALATLDPHRPIRAMAAGRTDSGVHAAGQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ ALN L S I + + V +HA FSA R Y Y + + Sbjct: 72 VHFEASGPIPSERWAAALNGRLPAS--IRVRAAAAVPSTWHACFSACYRRYRYTLYNGRR 129 Query: 122 PLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +W + L+ M A + L+G HDF+ F+ + + + Sbjct: 130 PNLFLSPWSWHRYRQRLNERAMATALRGLLGFHDFSAFQRAGSRRPHARTKVQAVSLERH 189 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ + + A FL+ +R +G L VG+G+ + E+ + + R E AP GL Sbjct: 190 GDLVVVEIQASGFLYGMVRLIMGQLVAVGEGQLSLAGFERRWRQRARSEVKEAAPAHGLC 249 Query: 241 FDSVEY 246 V Y Sbjct: 250 LLRVGY 255 >gi|315230173|ref|YP_004070609.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP] gi|315183201|gb|ADT83386.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP] Length = 266 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 27/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEIVVVHGAGRTDSGVHA 57 +R + I Y+GS ++G+QRQ +++G I +K + + E GA RTD GV A Sbjct: 1 MRIALKIAYDGSKFYGFQRQPGLRTVEGEIIRVLQKLDVIESPENANFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L V F+ E + + LN +L+ I +L ++ V FH RF A + Y Y Sbjct: 61 LGNVIAFNT--ENPKLAQPRVLNHHLR---DIWVLGVAQVSDDFHPRFWAKSKIYRY--- 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +L+ + D M+ A+ VG HDF+ F + + PIR ++ ++ Sbjct: 113 -------------YLVDEGFDVNAMKECARLFVGTHDFSAFARVE-KFKDPIREVNRLEI 158 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+LI I + +SFL +R V +LKL G G + D+ K L+ + K+ P +PPE Sbjct: 159 IPRGDLIIIEIEGKSFLWEMVRRIVTALKLCGFGIVETEDIRKMLEGRTDKKLPP-SPPE 217 Query: 238 GLYFDSVEYS 247 L ++Y Sbjct: 218 NLVLWEIKYE 227 >gi|302536280|ref|ZP_07288622.1| tRNA pseudouridine synthase A [Streptomyces sp. C] gi|302445175|gb|EFL16991.1| tRNA pseudouridine synthase A [Streptomyces sp. C] Length = 287 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 121/252 (48%), Gaps = 10/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ V E V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRTLRTVQGELESALQTVMRLKEPVELTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVA FDL E W L + L ++ I + + + F+ARFSAI R Y YR+ Sbjct: 70 QVAQFDLAEEVWAEHHDKLLRRLAG--RLPHDIRVWKAAEAPEGFNARFSAIWRRYAYRV 127 Query: 117 ITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +A + L +G LD + M AA LVG HDF + + ++ IRT+ Sbjct: 128 GDHRAGVDPLRRGHVLWHQWPLDVDAMNEAAAALVGEHDFAAY-CKKREGATTIRTLQQL 186 Query: 176 DVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + ++ V A +F H +RS VG+L VGDG + L A R + Sbjct: 187 SWERGEDGVVTATVRADAFCHNMVRSLVGALLHVGDGHRPVEWPGQVLAAAVRDSSVHVV 246 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 KPHGLTLEEVGY 258 >gi|333026542|ref|ZP_08454606.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071] gi|332746394|gb|EGJ76835.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071] Length = 284 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 17/256 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG-----EIVVVHGAGRTDSGV 55 +R + + Y+G+ + GW RQ G ++Q ++E+A+ +VT E+ V AGRTD+GV Sbjct: 1 MRLRLDLSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTV---AGRTDAGV 57 Query: 56 HALRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 HA QVAH + E W L K L ++ + + ++ + F ARFSAI R Y Sbjct: 58 HARGQVAHVGMADEVWAEHGEKLLKRLAG--RLPKDVRVWRVAPAPEGFEARFSAIWRRY 115 Query: 113 LYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 YR+ + + L +G + LD + M AA+ L+G HDF + + ++ IR Sbjct: 116 AYRVADQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAY-CKKREGATTIRE 174 Query: 172 IDH-FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + F ++E V A +F H +RS VG+L VGDG + K L A R Sbjct: 175 MQQLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSA 234 Query: 231 GPLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 235 VHVVRPVGLTLEEVGY 250 >gi|167758957|ref|ZP_02431084.1| hypothetical protein CLOSCI_01303 [Clostridium scindens ATCC 35704] gi|167663364|gb|EDS07494.1| hypothetical protein CLOSCI_01303 [Clostridium scindens ATCC 35704] Length = 245 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 13/247 (5%) Query: 6 MIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAG-RTDSGVHALRQV 61 + IEY+GS Y GW R +++ +++ I + + ++GE ++ G RT+ GVHA Q+ Sbjct: 6 LTIEYDGSRYQGWTRLGKEESNNTVSNKIIEVLRKMSGEYLIELNCGCRTEVGVHAYAQI 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + + LN YL + I+I + V ++FHA+ +A ++Y+YR+ Sbjct: 66 ANFKTESKMDVLEIKHYLNRYLPMD--IAITEVEEVPERFHAQLNAASKTYVYRMTIDDV 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ + K D M+ AA L+G HDF F S ++ S R I F++ +G Sbjct: 124 PSVFDRKYTYHCFKIPDKRVMQQAAMLLIGTHDFKNF-STAKKSKSTERQI--FEIEVYG 180 Query: 182 NLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + E++++ A FLH R +G+L +G G D+E+ R+ P+GL Sbjct: 181 DTEEMQILIHADDFLHNMARLIIGTLMDIGFGTRRKEDIEEIFAG--RQLASAPCDPKGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLQEVAY 245 >gi|197122727|ref|YP_002134678.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] gi|196172576|gb|ACG73549.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] Length = 272 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 20/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL QV Sbjct: 6 YALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GLRAQLHVAARTDAGVHALAQVVS 64 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P L + LN L + I +L+ + V FHAR SAI R+Y+Y ++ P Sbjct: 65 FSARAALDPAALRRGLNEGL--PEGILVLDAARVGPSFHARGSAIARTYVY-LVGAPPPE 121 Query: 124 ALEKGRAWLIPKS-----------LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 L + AW +P + LD MR A H VG HDF F Q + +RT+ Sbjct: 122 GL-RPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFARPGEQRGT-VRTL 179 Query: 173 DHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +V G L+ + + + FL +R+ VG+ G G+ D+ + L A + Sbjct: 180 LRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGR-APPDVIRTLLATRGRYR 238 Query: 231 GPLAPPEGLYFDSVEYS 247 G AP GL +V Y Sbjct: 239 GVRAPGWGLTLAAVRYP 255 >gi|326671566|ref|XP_683563.5| PREDICTED: tRNA pseudouridine synthase-like 1-like [Danio rerio] Length = 291 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 134/274 (48%), Gaps = 32/274 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQG---SIEKAIF-LVTGEIVVVHGAGRTDSGVHAL 58 RY + +Y GS Y G + ++QG +E A+ L V V + RTD+GVHAL Sbjct: 7 RYLIFFQYTGSKYSGVMKAPAHQAVQGVGNHLENAVRKLKPVNEVCVSISSRTDTGVHAL 66 Query: 59 RQVAHFDLVR--EWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P+ L +ALN LK + I I V FHAR+ A R+Y+ Sbjct: 67 CNSAHVDIQRRADKPPLSEQSLLEALNFQLK-EEPIRITRAYRVHSDFHARYQAQSRTYV 125 Query: 114 YRIIT-----RQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQA-- 165 YR+ PL EK W + + L+ + MR A+ L+G HDF+TFR++ A Sbjct: 126 YRLALGCQHHTLMPLT-EKDLCWALRDTRLNIDAMREASALLLGTHDFSTFRALSSDAPF 184 Query: 166 SSPIRTID--------HFDVNSFGNLI---EIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 P++T+D F F I E+ +RSFL+ Q+R G L +G G+ + Sbjct: 185 KCPVKTLDLAQLEPGESFSQRHFQRDIQFWELTFKSRSFLYRQVRRMTGVLVAIGQGRLS 244 Query: 215 STDLEKALQAQDRK--ECGPLAPPEGLYFDSVEY 246 + ++ L+A+D AP GL+ +V+Y Sbjct: 245 VSKIQDLLEARDSLAFPNNLTAPAHGLFLTNVQY 278 >gi|239943606|ref|ZP_04695543.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] gi|239990059|ref|ZP_04710723.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 11379] gi|291447073|ref|ZP_06586463.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] gi|291350020|gb|EFE76924.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] Length = 284 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVRE-WV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL W L + L L + + + + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLD--VRVWRAAPAPAGFNARFSALWRRYAYRV 127 Query: 117 ITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R + L +G + LD ++M AA +VG HDF + + ++ IRT+ Sbjct: 128 GDRPGGVDPLTRGHVLWHDRPLDLDSMNEAAALMVGEHDFAAY-CKKREGATTIRTLQKL 186 Query: 176 D--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + ++ V A +F H +R+ +G+ VGDG+ ++ + L A+ R + Sbjct: 187 SWVRDEESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPASWPAEVLAAKVRDPGVHV 246 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 VRPHGLTLEEVAY 259 >gi|33864024|ref|NP_895584.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9313] gi|42559756|sp|Q7TUP1|TRUA_PROMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33635608|emb|CAE21932.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9313] Length = 295 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y GS + GWQRQ S+Q +E AI L + AGRTD+GVHA QV Sbjct: 17 RIGLSVQYEGSNFCGWQRQPQAVSVQQVLEDAISQLDPQRPIQAVAAGRTDAGVHAAGQV 76 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD W P ALN ++ TI + +HA SAI R Y Y I Sbjct: 77 VHFDCCGPIPAERWAP-----ALNG--RLPSTIRVREAVARPASWHACHSAIYRRYRYTI 129 Query: 117 ITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + P +W LD M+IA + L+G DF+ F+ + + TI Sbjct: 130 YNGRRPNLFLTPWSWHRYQVRLDETMMQIALEGLLGLQDFSAFQRTGSRRAHARTTIQEV 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G+LI I + A FL+ +R +G L +G+ + E+ + + R+E AP Sbjct: 190 KIERQGDLIMIEIQASGFLYGMVRLLMGQLVALGEHRLNLETFERRWKEKRRQEVKEAAP 249 Query: 236 PEGL 239 +GL Sbjct: 250 AQGL 253 >gi|290999771|ref|XP_002682453.1| predicted protein [Naegleria gruberi] gi|284096080|gb|EFC49709.1| predicted protein [Naegleria gruberi] Length = 377 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 140/310 (45%), Gaps = 73/310 (23%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGV 55 RY +I +Y G+ Y G+Q+Q N G++IQ IE ++ T +I +V G+ RTDSGV Sbjct: 58 RYKLIFQYRGNNYDGYQKQNNKGEPRGNTIQKHIEGSLHKLFNTNDIYIV-GSSRTDSGV 116 Query: 56 HALRQVAHFDLVRE-------WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 HAL HFD+ E + + LN YLK D I I + D FHAR Sbjct: 117 HALHNTCHFDVASEIIEKRENYTAKNVIFGLNFYLKDED-IVICSCEKKDMNFHARHRVK 175 Query: 109 RRSYLYRI-ITRQAP-LALE----KGRAWLI---------PK----SLD---------CE 140 R Y YR+ +T P LA + + + W++ P SLD + Sbjct: 176 EREYQYRVLLTGPKPDLAYKVPFIQDQYWIVNGAKYEQGGPTKQEISLDFRSLETYFRID 235 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIR----------TIDHFDVN----------SF 180 ++R A Q+ +G H+F F C++ P R T++ D+ S Sbjct: 236 DVREACQYFIGTHNFNNF----CKSDLPERVSRIKTINSVTVEEIDLQQDQTISPLFFST 291 Query: 181 GNLIEIRVVAR--SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK--ECGPLAPP 236 EIR R SFLH Q+R V +L VG GK T L +Q + + E G APP Sbjct: 292 SKCKEIRFTIRGNSFLHNQVRIMVDALVKVGIGKMNPTYLRALVQNPNMRYPEKGS-APP 350 Query: 237 EGLYFDSVEY 246 GL+ +V Y Sbjct: 351 HGLFLTNVVY 360 >gi|73956519|ref|XP_546716.2| PREDICTED: similar to pseudouridylate synthase-like 1 [Canis familiaris] Length = 294 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 114/226 (50%), Gaps = 31/226 (13%) Query: 48 AGRTDSGVHALRQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 + RTD+GVHAL AH D+ R + P +L +ALNA+++ I +L V FH Sbjct: 60 SSRTDAGVHALSNAAHLDVQRRSGQPPFSPEVLAEALNAHVR-HPAIRVLQAFRVPSDFH 118 Query: 103 ARFSAIRRSYLYRIIT---RQAPLAL-EKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTT 157 AR +A R+YLYR++T R L++ E+ R W L LD + M+ AAQHL+G HDF Sbjct: 119 ARHAATSRTYLYRLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRA 178 Query: 158 FRSIHCQASSPIRTIDHFDVNS---------------FGNLIEIRVVARSFLHTQIRSFV 202 F+S +S +RT+ V+ F NL +RSFL+ Q+R Sbjct: 179 FQSAGSPTTSSVRTLRRASVSPDPGSPFVLAQEKRLHFWNL---EFESRSFLYRQVRRMT 235 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 L VG G ++ L+++D + +AP GL+ SV Y Sbjct: 236 AVLVAVGLGALRPAQVKVILESRDPLGRHQARVAPAHGLFLKSVLY 281 >gi|225568181|ref|ZP_03777206.1| hypothetical protein CLOHYLEM_04255 [Clostridium hylemonae DSM 15053] gi|225162900|gb|EEG75519.1| hypothetical protein CLOHYLEM_04255 [Clostridium hylemonae DSM 15053] Length = 245 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 128/249 (51%), Gaps = 17/249 (6%) Query: 6 MIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAG-RTDSGVHALRQV 61 + IEY+GS Y GW R +++ +++ I + + +TGE ++ G RT+ GVHA QV Sbjct: 6 LTIEYDGSRYQGWCRLGKEESNNTVSNKIIEVLRKMTGEYIIELNCGCRTEVGVHAYAQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + + LN YL + I+I N+ V +FHA+ +A ++Y+YR+ Sbjct: 66 ANFKTDSDMDILEIKHYLNRYLPMD--IAITNVEDVPDRFHAQLNATSKTYVYRMTIDDV 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ + K D + M+ A+ +G+HDF F ++ + + ++ I F++ +G Sbjct: 124 PSVFDRKYTYHCFKIPDKKLMQQASLLFIGKHDFKNFSTVK-KNKTTVKEI--FEIEVYG 180 Query: 182 NLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP--PE 237 + E++++ A FLH R VG+L +G G D+E+ P +P + Sbjct: 181 DTEEMQILIHADDFLHNMARLVVGTLLEIGFGTRKKEDIEEIFAGTK----TPSSPCDAK 236 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 237 GLYLQEVSY 245 >gi|296141060|ref|YP_003648303.1| tRNA pseudouridine synthase A [Tsukamurella paurometabola DSM 20162] gi|296029194|gb|ADG79964.1| tRNA pseudouridine synthase A [Tsukamurella paurometabola DSM 20162] Length = 273 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 14/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I Y+G+ + GW RQ ++ G +E+AI V V + AGRTD+GVHA Q Sbjct: 1 MTRYRLDIAYDGTDFSGWARQPERRTVCGVVEEAIGTVLRTPVQLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D +P L + L L + + ++ +F ARFSA+RR Y YR+ Sbjct: 61 VAHVDTDLA-LPEGLVRRLARMLP--QDVRVTAIAEAPAEFDARFSALRRHYEYRLT--D 115 Query: 121 APLALEKGRA-----WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 AP RA W P +D E M+ A+ L+G HDF F + ++ +R + F Sbjct: 116 APYGANPLRARDTAPWRRP--VDVERMQAASDALLGLHDFAAF-CRRREGATTVRELQRF 172 Query: 176 DVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + V A +F + +RS VG++ VG+G+ + + L ++R +A Sbjct: 173 AWRRDADGVCTAEVSADAFCWSMVRSLVGAVAAVGEGRRSVEWVAGLLDERERSSAINVA 232 Query: 235 PPEGLYFDSVEY 246 GL V+Y Sbjct: 233 AACGLTLVRVDY 244 >gi|149193965|ref|ZP_01871063.1| Pseudouridylate synthase [Caminibacter mediatlanticus TB-2] gi|149135918|gb|EDM24396.1| Pseudouridylate synthase [Caminibacter mediatlanticus TB-2] Length = 223 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 19 QRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA 78 Q+Q N +IQG IE A+ + +V H AGRTD GVHAL QV F + W L + Sbjct: 2 QKQPNKKTIQGEIELALNKLNINSIVQH-AGRTDKGVHALNQVISFTIPNFWDLNKLQTS 60 Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 LN + I + D F+ RF+A +RSY Y I +P + + K ++ Sbjct: 61 LNKIIHPYIHIKKIKFIKND--FNPRFNAKKRSYRYIISPIFSPHKADYETYY--DKKIN 116 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 E ++ A + G +DF F + ++ IRTI D+ + N + ++++ FL QI Sbjct: 117 IELLKKAIKKFEGTYDFEYFAKTGSEVNNYIRTIYKTDIIEYKNKVILKIIGNGFLRGQI 176 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R L ++ + K T DL+K L +D+ LAPP GLY + + Y Sbjct: 177 RIITNFLLMINENKLTIDDLQKQLN-KDQLFTKHLAPPNGLYLERIWY 223 >gi|326777220|ref|ZP_08236485.1| tRNA pseudouridine synthase A [Streptomyces cf. griseus XylebKG-1] gi|326657553|gb|EGE42399.1| tRNA pseudouridine synthase A [Streptomyces cf. griseus XylebKG-1] Length = 284 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL W L + L L + + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLD--VRIWRAAPAPAGFNARFSALWRRYAYRV 127 Query: 117 ITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R + L +G + LD + M AA +VG HDF + + ++ IRT+ Sbjct: 128 GDRPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAY-CKKREGATTIRTLQKL 186 Query: 176 D--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + L+ V A +F H +R+ +G+ VGDG+ + + L A+ R + Sbjct: 187 RWVRDPATGLLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPAEVLAAKVRDPGVHV 246 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 VRPHGLTLEEVAY 259 >gi|126640496|ref|YP_001083480.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 17978] Length = 205 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 12/192 (6%) Query: 61 VAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 VAHFD R W+ + A ++ ISI + +D++FHARF A R Y Y Sbjct: 2 VAHFDTNAIRPERGWI-------MGANSQLPKDISIQWIKQMDEEFHARFKATARRYRYV 54 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H Sbjct: 55 VYNAPHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHC 114 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G + + + A FLH +R+ +G L +G G + ++ A+DRK G AP Sbjct: 115 RLFEHGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAP 174 Query: 236 PEGLYFDSVEYS 247 P+GLYF Y Sbjct: 175 PDGLYFIQCYYP 186 >gi|295838433|ref|ZP_06825366.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74] gi|197695769|gb|EDY42702.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74] Length = 284 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 125/254 (49%), Gaps = 11/254 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ G ++Q ++E+A+ +VT E + AGRTD+GVHA Sbjct: 1 MRLRLDLSYDGTEFHGWARQPAGRRTVQETLEEALRVVTRAPEPYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QVAH ++ E W L K L ++ + + ++ + F ARFSAI R Y YR Sbjct: 61 GQVAHVEMADEVWAEHGEKLLKRLAG--RLPKDVRVWRVAPAPEGFDARFSAIWRRYAYR 118 Query: 116 IITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + L +G + LD + M AA+ L+G HDF + + ++ IR + Sbjct: 119 VADQPGGADPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAY-CKKREGATTIREMQR 177 Query: 175 -FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 F ++E V A +F H +RS VG+L VGDG + K L A R + Sbjct: 178 LFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHV 237 Query: 234 APPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 VRPVGLTLEEVGYP 251 >gi|302519630|ref|ZP_07271972.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78] gi|318058099|ref|ZP_07976822.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actG] gi|302428525|gb|EFL00341.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78] Length = 284 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 126/256 (49%), Gaps = 17/256 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG-----EIVVVHGAGRTDSGV 55 +R + + Y+G+ + GW RQ G ++Q ++E+A+ +VT E+ V AGRTD+GV Sbjct: 1 MRLRLDLSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTV---AGRTDAGV 57 Query: 56 HALRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 HA QVAH + E W L K L ++ + + ++ + F ARFSAI R Y Sbjct: 58 HARGQVAHVGMADEVWAEHGEKLLKRLAG--RLPKDVRVWRVAPAPEGFDARFSAIWRRY 115 Query: 113 LYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 YR+ + + L +G + LD + M AA+ L+G HDF + + ++ IR Sbjct: 116 AYRVADQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAY-CKKREGATTIRE 174 Query: 172 IDH-FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + F ++E V A +F H +RS VG+L VGDG + K L A R Sbjct: 175 MQQLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSA 234 Query: 231 GPLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 235 VHVVRPVGLTLEEVGY 250 >gi|152993424|ref|YP_001359145.1| tRNA pseudouridine synthase A [Sulfurovum sp. NBC37-1] gi|151425285|dbj|BAF72788.1| tRNA pseudouridine synthase A [Sulfurovum sp. NBC37-1] Length = 240 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 9/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGS-IEKAIFLVTGEIVV-VHGAGRTDSGVHALR 59 +R +I Y+GS + G+Q+Q + + IE A L +I+ + G+GRTD+GVHA Sbjct: 1 MRVKAVIAYDGSAFQGFQKQTRTNRTVTTTIENA--LADLQIISPLTGSGRTDAGVHASG 58 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL W L + N+ K TI ++S FHARFSA +R +YR I + Sbjct: 59 QVIHFDLPEFWSD--LNRLKNSLNKKLSTIRFKHISAAPDDFHARFSAKKR--IYRYIFK 114 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L++ + + S D + ++ A VG HDF F + +R I + Sbjct: 115 ENELSVFERKYVAHYSSFDPDILKRALLMFVGEHDFIYFHKTGSDIHTTVRKIYDANYRQ 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + A FL +Q+R V S L + T L+K + A+ R L+PPEGL Sbjct: 175 EGKYHFLYFTANGFLRSQVRMMVESAMLCAQNELTLEQLQKQINAEKRYHS-RLSPPEGL 233 Query: 240 YFDSVEY 246 Y + Y Sbjct: 234 YLARILY 240 >gi|269837096|ref|YP_003319324.1| tRNA pseudouridine synthase A [Sphaerobacter thermophilus DSM 20745] gi|269786359|gb|ACZ38502.1| tRNA pseudouridine synthase A [Sphaerobacter thermophilus DSM 20745] Length = 271 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 114/254 (44%), Gaps = 21/254 (8%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+GS +FG QRQ ++QG++E A + GE V AGRTD GVHA+ QVA + Sbjct: 16 YDGSAFFGSQRQPGVRTVQGALESAAERLAGEPTRVALAGRTDRGVHAVGQVASLRIRWA 75 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 L +AL A D + + VD++FHARFSA R Y Y + P L +GR Sbjct: 76 RSADELARALMAL--TPDDLVVYGAREVDERFHARFSARWREYRYFVWEGPVP-TLMRGR 132 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF--------- 180 W++ L+ M AA +GR DF P ID S Sbjct: 133 VWVVRTPLNLAAMNAAADAFIGRRDFAA--VAGAGVGVPWSGIDTTRTVSLARWRIVDQP 190 Query: 181 -------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 G L+E R+ A FL +R+ VGSL VG G E+ L +DR+ Sbjct: 191 FERHDRSGRLLEFRIRADGFLPHMVRNIVGSLVAVGRGDRPIGWTEELLAGRDRRRGEAP 250 Query: 234 APPEGLYFDSVEYS 247 AP +GL V Y Sbjct: 251 APAQGLVLWRVAYD 264 >gi|157738399|ref|YP_001491083.1| tRNA pseudouridine synthase A [Arcobacter butzleri RM4018] gi|157700253|gb|ABV68413.1| tRNA pseudouridine synthase A [Arcobacter butzleri RM4018] Length = 240 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ Y+GS + G Q+Q NG +++ + KA + + +V +GRTD VH+ QV + Sbjct: 5 FVVAYDGSLFQGSQKQPNGKTVENELLKAFENINIKTQIVL-SGRTDKEVHSSGQVFNCQ 63 Query: 66 LVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + W K LN L S I I +S VD+ FH+RFSA +R Y Y I T++ Sbjct: 64 IPSYWEDFFKLKEILNKNLPTS--IKIKKISKVDESFHSRFSAKKRVYRYLITTKETTPF 121 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 +K ++ KS+D + ++ A + +G HDF F + R I + ++ Sbjct: 122 NDKFITYV--KSVDEKLLKKAIKEFIGIHDFKYFHKTGSDKENTNREIFDTKFYKYKDIY 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + A S+L +QIR VG L + D K T DL K L + P+ P GLY + Sbjct: 180 VFKFTANSYLRSQIRLMVGFLLAINDKKLTIEDLRKQLNCEKIIFKTPIK-PNGLYLAKI 238 Query: 245 EY 246 +Y Sbjct: 239 KY 240 >gi|295395151|ref|ZP_06805359.1| tRNA pseudouridine synthase A [Brevibacterium mcbrellneri ATCC 49030] gi|294971913|gb|EFG47780.1| tRNA pseudouridine synthase A [Brevibacterium mcbrellneri ATCC 49030] Length = 303 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 124/271 (45%), Gaps = 32/271 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + + Y G+ + GW Q + ++QG +E A+ + V V AGRTD+GVHA RQV Sbjct: 18 RFRIDLGYVGTHFHGWALQPHLRTVQGELETALARILSAPVRVTVAGRTDAGVHARRQVV 77 Query: 63 HFDLVREWVPVI----------------LCKALNAYLKISDT--ISILNLSIVDKQFHAR 104 H D+ P + L L L D I I +++ V F AR Sbjct: 78 HVDIPHTDFPRLVGQPRARAEQRTPARGLTSRLRGVLARQDASDIVIHDVTAVHADFDAR 137 Query: 105 FSAIRRSYLYRIITRQA---PLALEKGRAWLIP--KSLDCENMRIAAQHLVGRHDFTTFR 159 FSA+ RSY YR+ QA PL A+ + LD M AAQ + G DF F Sbjct: 138 FSALWRSYTYRLADPQAFTDPLTA----AFTVEHRAELDVAAMSAAAQQVCGLRDFLPFC 193 Query: 160 SIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + S+ IRT++ V G+ +IE + A +F H +R+ VG L VG+GKW L Sbjct: 194 KPR-EGSTTIRTLEELRVERVGSGVIEFFLRADAFCHHMVRALVGGLVKVGEGKWGPGRL 252 Query: 219 EKALQAQDRKECG-PL--APPEGLYFDSVEY 246 + R P+ P GL + V Y Sbjct: 253 AGMCEEAGRGGSEFPMFVFPAHGLVLEDVGY 283 >gi|307721208|ref|YP_003892348.1| tRNA pseudouridine synthase A [Sulfurimonas autotrophica DSM 16294] gi|306979301|gb|ADN09336.1| tRNA pseudouridine synthase A [Sulfurimonas autotrophica DSM 16294] Length = 236 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 13/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + YNG+ +FG Q QK S ++ G +E + + E V+ +GRTD GVHA Q Sbjct: 1 MRVALHLAYNGTHFFGSQTQKETSKTVLGELENVLKKLGIEQKVI-ASGRTDKGVHATMQ 59 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL W L + LN L +D + + + V FHAR+SA +R+Y Y I T Sbjct: 60 VCHIDLPPYWEDTQKLKRVLNEML--NDALHVKRIRPVSDDFHARYSAKKRTYRYIIKTT 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q+ EK + K ++ EN++ VG+HDF F + S R I Sbjct: 118 QSN-PFEKDFVTFL-KDINFENIQENIALFVGKHDFKQFMKTGSEVKSTTRIIYKAFAYK 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + + A FL +QIR VG+L + + +++ L + + P AP GL Sbjct: 176 YKDYVVLNFQANGFLRSQIRLMVGALLSLN-----AQQIQEQLNCSNNYKIKP-APANGL 229 Query: 240 YFDSVEY 246 Y ++ Y Sbjct: 230 YLSTITY 236 >gi|254383143|ref|ZP_04998497.1| tRNA pseudouridine synthase A [Streptomyces sp. Mg1] gi|194342042|gb|EDX23008.1| tRNA pseudouridine synthase A [Streptomyces sp. Mg1] Length = 283 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 122/252 (48%), Gaps = 10/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ V + V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRVLRTVQGELESALTTVMRLPDPVELTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVA FD+ E W L + L ++ + + ++ + F+ARFSAI R Y YR+ Sbjct: 70 QVAQFDVAEEVWAEHHDKLLRRLAG--RLPHDVRVWKVAEAPQGFNARFSAIWRRYAYRV 127 Query: 117 ITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q + L +G LD + M AA L+G HDF + + ++ IRT+ Sbjct: 128 GDHQGGVDPLRRGHVLWHQWPLDVDAMNRAAAALLGEHDFAAY-CKKREGATTIRTLQQL 186 Query: 176 DVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 G+ ++ V A +F H +RS VG+L VGDG + L A R + Sbjct: 187 SWERAGDGIVTATVRADAFCHNMVRSLVGALLHVGDGHRPVEWPGQVLAAGVRDSSVHVV 246 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 KPHGLTLEEVGY 258 >gi|326332230|ref|ZP_08198510.1| tRNA pseudouridine synthase A [Nocardioidaceae bacterium Broad-1] gi|325949936|gb|EGD41996.1| tRNA pseudouridine synthase A [Nocardioidaceae bacterium Broad-1] Length = 287 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 23/265 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGE--IVVVHGAGRTDSG 54 +R + + Y+G+ + GW Q ++QG ++ A+ TGE V V AGRTDSG Sbjct: 1 MRIRIDLAYDGTMFHGWATQPGLRTVQGELQAALATALRVPSTGERSQVWVTVAGRTDSG 60 Query: 55 VHALRQVAHFDL----------VREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHA 103 VHA QVAHFD+ E P+ L + LN L + + + F+A Sbjct: 61 VHARGQVAHFDIDADVLESSRGRSEQSPLDSLVRRLNGILPAD--LRVHRAVEAPEGFNA 118 Query: 104 RFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R Y+YRI+ A + L +G + LD M +A+ LVG +DF +F Sbjct: 119 RFSALSRRYVYRIVDDPAFVDPLLRGHVLYRTRPLDLSLMNVASADLVGLNDFASFCKPR 178 Query: 163 CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + ++ IR + + + +IE V+A +F H+ +RS VG L ++G+G+ T +++ Sbjct: 179 -EGATTIRDLRQLTWDRRPDGIIEATVLADAFCHSMVRSLVGCLMVIGEGRKDVTWAKES 237 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 L A+ R P+AP GL + V Y Sbjct: 238 LAARSRSSSIPIAPANGLTLEEVAY 262 >gi|241896974|ref|NP_001028662.1| tRNA pseudouridine synthase-like 1 [Mus musculus] gi|218525914|sp|A2ADA5|PUSL1_MOUSE RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|123295163|emb|CAM18398.1| pseudouridylate synthase-like 1 [Mus musculus] Length = 291 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 128/274 (46%), Gaps = 32/274 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEIVVVHGAGRTDSGVHAL 58 RY + ++Y G+ + G + G + E A L + + V + RTD+GVHAL Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P ++ KALN +LK I +L V FHAR +A R+Y Sbjct: 73 SNAAHLDIQRRPGQSPFSPEVVAKALNTHLK-HPAIRVLKAFRVPNDFHARHAATSRTYQ 131 Query: 114 YRIIT-----RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 YR+ T Q P+ E+ W L + LD M+ AAQHL+G HDF+ F+S ++ Sbjct: 132 YRLATGCSWPNQLPV-FEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTN 190 Query: 168 PIRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 +RT+ V+ + ++SFL+ Q+R L VG G Sbjct: 191 TVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILA 250 Query: 215 STDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 T ++ L++QD K +AP GL+ SV Y Sbjct: 251 PTQVKVILESQDPLGKYQARVAPARGLFLKSVLY 284 >gi|332159317|ref|YP_004424596.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2] gi|331034780|gb|AEC52592.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2] Length = 263 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 30/250 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + G+QRQ N +++G I KA+ E A RTD GV AL V Sbjct: 1 MRVALKIAYDGTKFHGFQRQPNIRTVEGEIIKALNNSGIEYSDFKSASRTDKGVSALGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYL---KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 E KALN + ++ D + IL+ V FH RF A + Y Y Sbjct: 61 VAITTEDE-------KALNPMVLNARLED-VWILSAIEVPPDFHPRFWAKSKVYRY---- 108 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +L LD E ++ +Q +G HDF+ F + + + IR+ID +V Sbjct: 109 ------------YLPSIGLDVERVKECSQLFLGVHDFSAFSKVDERDT--IRSIDRIEVL 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPE 237 G ++ I + A+SFL +R V +L+L G GK ++ D+++ L+ + ++ + P APPE Sbjct: 155 VLGPILVIEIEAKSFLWEMVRRIVKALELCGLGKLSAEDVKEMLEGKFNKSKKVPPAPPE 214 Query: 238 GLYFDSVEYS 247 GL V+Y Sbjct: 215 GLLLVDVKYE 224 >gi|15639816|ref|NP_219266.1| tRNA pseudouridine synthase A [Treponema pallidum subsp. pallidum str. Nichols] gi|189026054|ref|YP_001933826.1| tRNA pseudouridine synthase A [Treponema pallidum subsp. pallidum SS14] gi|6136049|sp|O83802|TRUA_TREPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689345|sp|B2S468|TRUA_TREPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3323141|gb|AAC65796.1| pseudouridylate synthase (hisT) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018629|gb|ACD71247.1| pseudouridylate synthase [Treponema pallidum subsp. pallidum SS14] Length = 280 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 114/233 (48%), Gaps = 12/233 (5%) Query: 8 IEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 I Y+G+ + GWQ+Q +GS S+QG +EK + + + V G+GRTDSGVHA+ Q A Sbjct: 11 ISYDGTRFCGWQKQVSGSRERAPSVQGELEKVAEKIHHQKIAVIGSGRTDSGVHAVGQAA 70 Query: 63 HF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF +R + A N+ L S I I + V Q HARFSA+ R+Y Y + Sbjct: 71 HFCTPMRNILAYRFIPAFNSLLPHS--IRITDAREVSSQLHARFSAVMRTYRYHLHCAPV 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVNS 179 A E W I + D + A L G D T+F + +++S R HF N Sbjct: 129 AYAHELPYCWHIARMPDIHLLNQYAATLKGELDCTSFAAAGDKSASKSRYFYDTHFSFNH 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++ + A +FL +RS G+L + + + + L A+DR+ GP Sbjct: 189 --RVLTFEISANAFLWKMVRSLTGTLLHCEKKRCSVREFVRILHAKDRRLQGP 239 >gi|315636694|ref|ZP_07891924.1| tRNA pseudouridine synthase A [Arcobacter butzleri JV22] gi|315479009|gb|EFU69712.1| tRNA pseudouridine synthase A [Arcobacter butzleri JV22] Length = 240 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ Y+GS + G Q+Q NG +++ + KA + + +V +GRTD VH+ QV + Sbjct: 5 FVVAYDGSLFQGSQKQPNGKTVENELLKAFENINIKTQIVL-SGRTDKEVHSSGQVFNCQ 63 Query: 66 LVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + W K LN L S I I +S V++ FH+RFSA +R Y Y I T++ Sbjct: 64 IPSYWEDFFKLKEILNKNLPTS--IKIKKISKVEESFHSRFSAKKRVYRYLITTKETTPF 121 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 +K ++ KS+D + ++ A + +G HDF F + R I + ++ Sbjct: 122 NDKFITYV--KSVDEKLLKKAIKEFIGVHDFKYFHKTGSDKENTNREIFDTKFYKYKDIY 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + A S+L +QIR VG L + D K T DL+K L + P+ P GLY + Sbjct: 180 VFKFTANSYLRSQIRLMVGFLLAINDKKLTIEDLKKQLNCEKSIFKTPIK-PNGLYLAKI 238 Query: 245 EY 246 +Y Sbjct: 239 KY 240 >gi|229821589|ref|YP_002883115.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333] gi|229567502|gb|ACQ81353.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333] Length = 286 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 123/261 (47%), Gaps = 16/261 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 ++R + + Y+G+ + GW RQ ++QG +E+A+ L E + AGRTD+GVHA Sbjct: 4 VLRVRLDLAYDGAAFAGWARQPGLRTVQGDLEEALGRVLRLPEPPRLTVAGRTDAGVHAR 63 Query: 59 RQVAHFDLVREW---VPVILCKALNAYLK------ISDTISILNLSIVDKQFHARFSAIR 109 QVAH DL RE P + A L+ + + + +++ F ARFSAI Sbjct: 64 GQVAHVDLPREAYLAAPGRSERDPGAALRTRLAGVLPPDVVVGHVAPAPPGFDARFSAIW 123 Query: 110 RSYLYRIITRQAPLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y YR+ A L R W + + LD M AA+ L+G HDF F A++ Sbjct: 124 RRYAYRVADDGA-LHDPLRRGWTVWHRRPLDVVAMDAAARRLLGEHDFAAFCRPREGATT 182 Query: 168 PIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 IRT+ V L+ V A +F H+ +R+ VG+ VG+ + L A Sbjct: 183 -IRTLQELTWVRDDAGLLVAHVRADAFCHSMVRALVGACLAVGESRREVGWPRAVLDAAR 241 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R +AP GL + + Y Sbjct: 242 RDSAVQVAPAHGLVLEEIGYP 262 >gi|318079697|ref|ZP_07987029.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actF] Length = 282 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 123/250 (49%), Gaps = 17/250 (6%) Query: 8 IEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG-----EIVVVHGAGRTDSGVHALRQV 61 + Y+G+ + GW RQ G ++Q ++E+A+ +VT E+ V AGRTD+GVHA QV Sbjct: 5 LSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTV---AGRTDAGVHARGQV 61 Query: 62 AHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AH + E W L K L ++ + + ++ + F ARFSAI R Y YR+ Sbjct: 62 AHVGMADEVWAEHGEKLLKRLAG--RLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVAD 119 Query: 119 RQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FD 176 + + L +G + LD + M AA+ L+G HDF + + ++ IR + F Sbjct: 120 QAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAY-CKKREGATTIREMQQLFW 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++E V A +F H +RS VG+L VGDG + K L A R + P Sbjct: 179 TRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVRP 238 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 239 VGLTLEEVGY 248 >gi|297159627|gb|ADI09339.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1] Length = 292 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 124/256 (48%), Gaps = 13/256 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSI---QGSIEKAIFLVT--GEIVVVHGAGRTDSGVH 56 +R + + Y+G+ + GW +Q+ ++ QG +E A+ +V + V + AGRTD+GVH Sbjct: 10 VRVRLNLSYDGTDFSGWAKQRGRDTVRTVQGELESALKVVMRMQDPVELTVAGRTDAGVH 69 Query: 57 ALRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 A QVAH DL W L + L ++ I + ++ F+ARFSAI R Y+ Sbjct: 70 ARGQVAHVDLPEPIWAEHHEKLLRRLAG--RLPHDIRVWSVGEAPPGFNARFSAIWRRYV 127 Query: 114 YRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR++ + L +G LD + M AAQ L+G HDF + A++ IRT+ Sbjct: 128 YRVVDHPGGVDPLLRGHVLWHDWPLDVDAMNEAAQKLLGEHDFAAYCKKRDGATT-IRTL 186 Query: 173 DHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + +I V A +F H +RS VG+L VGDG + K L A R Sbjct: 187 QRLSWERGPDGIITATVRADAFCHNMVRSLVGALLFVGDGHRPADWPAKVLAAGVRDSAV 246 Query: 232 PLAPPEGLYFDSVEYS 247 + P GL + V Y Sbjct: 247 HVVRPHGLTLEQVGYP 262 >gi|182436598|ref|YP_001824317.1| tRNA pseudouridine synthase A [Streptomyces griseus subsp. griseus NBRC 13350] gi|238689026|sp|B1W3X8|TRUA_STRGG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|178465114|dbj|BAG19634.1| putative pseudouridine synthase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 284 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 11/253 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVRE-WV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL W L + L L + + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLD--VRIWRAAPAPAGFNARFSALWRRYAYRV 127 Query: 117 ITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R + L +G + LD + M AA +VG HDF + + ++ IRT+ Sbjct: 128 GDRPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAY-CKKREGATTIRTLQKL 186 Query: 176 D--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + ++ V A +F H +R+ +G+ VGDG+ + + L A+ R + Sbjct: 187 RWVRDPATGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPAEVLAAKVRDPGVHV 246 Query: 234 APPEGLYFDSVEY 246 P GL + V Y Sbjct: 247 VRPHGLTLEEVAY 259 >gi|331085203|ref|ZP_08334289.1| hypothetical protein HMPREF0987_00592 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407986|gb|EGG87476.1| hypothetical protein HMPREF0987_00592 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 248 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 116/249 (46%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+GS Y GWQR G S + I + + +T E V + RT+ GVHA Sbjct: 1 MRNILLTLEYDGSRYQGWQRLGKGESTNTVSNKILEVLKKMTNEDVELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + + + +N YL + I++L++ ++FHA +A R YLYR+ Sbjct: 61 YGQVVNFKTTTDMTLLEIKHYMNRYLPMD--IAVLSVEEKPERFHASLNAKSRIYLYRVA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P ++ + K D E M+ AA L G+HDF F ++ S+ + I + D+ Sbjct: 119 IAEVPSVFDRKYTYHSFKKPDTELMKQAALLLAGKHDFKKFSTVKKNKSTE-KEILNIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I+I + A FLH R + +L +G G ++++ P+ Sbjct: 178 YEDLEEIQITLEATDFLHNMPRMILSTLLDIGLGIRRKEEIDEIFSPTSSTVASAPCDPK 237 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 238 GLYLQEVVY 246 >gi|13507935|ref|NP_109884.1| tRNA pseudouridine synthase A [Mycoplasma pneumoniae M129] gi|2499079|sp|Q50291|TRUA_MYCPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1215692|gb|AAC43685.1| hypothetical 28k protein (alkaline endoglucanase); GT9_orf321 [Mycoplasma pneumoniae] gi|1674340|gb|AAB96283.1| pseudouridylate synthase I [Mycoplasma pneumoniae M129] gi|301633310|gb|ADK86864.1| tRNA pseudouridine synthase A [Mycoplasma pneumoniae FH] Length = 243 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 111/248 (44%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ YNG+ + GW +Q ++QG IE+ + L+ + ++G+GRTD GVHA+ Q Sbjct: 1 MPRYLAIVAYNGAPFRGWAKQPGYHTVQGQIEQNLALIYQTPINIYGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H DL + L LN L D I + L V +FHARF+ + Y Y I TR Sbjct: 61 TFHVDLPDKLPLKQLIAKLNQ-LNYPD-IFVKALVPVAPRFHARFAVKTKVYEYLINTRA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 A + W LD + +GR DF +F + + + RTI V Sbjct: 119 FNPA-QYHTVWQYNHPLDLAQLEADTTLFLGRKDFWSFSTASQKDTQ--RTISKIIVQQD 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ FL QIR V SL + + +++ + C AP GL Sbjct: 176 HTGTVKLTFFGNGFLRNQIRMMVASLVALNNRTLMRETVQQLFDQPQKGGCKVKAPACGL 235 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 236 YLKTVLYE 243 >gi|116490689|ref|YP_810233.1| pseudouridylate synthase [Oenococcus oeni PSU-1] gi|290890104|ref|ZP_06553187.1| hypothetical protein AWRIB429_0577 [Oenococcus oeni AWRIB429] gi|122277127|sp|Q04G54|TRUA_OENOB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116091414|gb|ABJ56568.1| Pseudouridylate synthase [Oenococcus oeni PSU-1] gi|290480295|gb|EFD88936.1| hypothetical protein AWRIB429_0577 [Oenococcus oeni AWRIB429] Length = 252 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSS--IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y + I Y+G + G+Q Q S +Q + K + + + V GA RTD+GVHA Sbjct: 1 MQNYKVTISYDGHYFEGFQTQNRPGSRTVQDELIKVVSKMAKTKIKVIGASRTDAGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F + + +N+ L I + + V F+AR S+ R+ YLYR+ T Sbjct: 61 GQVINFIFPFDLNEKAILMGMNSQLPTD--ILVKKVEKVPINFNARHSSHRKRYLYRVST 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ +LD ++ A L+G HDF++F + Q ++ IRT+ ++ Sbjct: 119 SKFIDPFKRFYTGHYFWNLDTNKIQEALPDLIGEHDFSSFAASGNQTATTIRTVTKAELK 178 Query: 179 SF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 F N + +FL+ QIR VG L +G+G D+ + ++ +DR++ AP Sbjct: 179 IFPKNNELLFTFEGNAFLYNQIRIMVGVLLEIGNGTRPVHDIIRLIKIKDRQQARFTAPA 238 Query: 237 EGLYFDSVEY 246 GLY D V Y Sbjct: 239 SGLYLDEVYY 248 >gi|84494739|ref|ZP_00993858.1| tRNA pseudouridine synthase [Janibacter sp. HTCC2649] gi|84384232|gb|EAQ00112.1| tRNA pseudouridine synthase [Janibacter sp. HTCC2649] Length = 283 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 12/258 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 ++R + + Y+G+ + GW Q +++G + A+ L E V + AGRTD+GVHA Sbjct: 3 LLRVRIDLAYDGTDFSGWAAQPGRRTVEGELSAALTTLLRAPEPVRLTVAGRTDAGVHAR 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDT---------ISILNLSIVDKQFHARFSAIR 109 QV H D+ + ++ + + + T + + +S F ARF+A+R Sbjct: 63 GQVVHADVDDTLYAALPGRSSRSPEEAARTRLAGILPSDVVVRAVSRAPDGFDARFAALR 122 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R YLYRI L L +G ++ LD M AA LVG HDF F A++ Sbjct: 123 RRYLYRICDDPGALDPLRRGDTVVLKDPLDVAAMNEAAGRLVGLHDFAAFCKKRDGATTV 182 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 +D+ V + +E VVA +F H+ +R+ VGS+ VG G+ + L R Sbjct: 183 RTLLDYSWVRAPDGTVEATVVADAFCHSMVRALVGSVVPVGMGRAEVDFPREVLTGGARD 242 Query: 229 ECGPLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 243 PRVKVMPAHGLSLEEVTY 260 >gi|325661070|ref|ZP_08149697.1| hypothetical protein HMPREF0490_00430 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472577|gb|EGC75788.1| hypothetical protein HMPREF0490_00430 [Lachnospiraceae bacterium 4_1_37FAA] Length = 248 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+GS Y GWQR G S + I + + +T E + + RT+ GVHA Sbjct: 1 MRNILLTLEYDGSRYQGWQRLGKGESTNTVSNKILEVLKKMTNEDIELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + + + +N YL + I++L++ ++FHA +A R YLYR+ Sbjct: 61 YGQVVNFKTTTDMTLLEIKHYMNRYLPMD--IAVLSVEEKPERFHASLNAKSRIYLYRVA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P ++ + K D E M+ AA L G+HDF F ++ S+ + I + D+ Sbjct: 119 IAEVPSVFDRKYTYHSFKKPDTELMKQAALLLAGKHDFKKFSTVKKNKSTE-KEILNIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I+I + A FLH R + +L +G G ++++ P+ Sbjct: 178 YEDLEEIQITLEATDFLHNMPRMILSTLLDIGLGIRRKEEIDEIFSPTSSTVASAPCDPK 237 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 238 GLYLQEVVY 246 >gi|152990852|ref|YP_001356574.1| tRNA pseudouridine synthase A [Nitratiruptor sp. SB155-2] gi|151422713|dbj|BAF70217.1| tRNA pseudouridine synthase A [Nitratiruptor sp. SB155-2] Length = 241 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 120/251 (47%), Gaps = 16/251 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R +I Y+GS + G+Q QK+ +++ + A+ V E +V G+GRTD GVHA Q Sbjct: 1 MRIKAVISYDGSRFDGFQIQKHTANTVMHHLYNALQRVGIESKIV-GSGRTDKGVHATAQ 59 Query: 61 VAHFDLVREWVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 V HFDL W + +L ++L Y++I + V K+FHAR+SA RR+Y Y Sbjct: 60 VIHFDLPPFWSELERLQNLLNESLRPYIQIKRVVK------VPKEFHARYSAKRRAYRY- 112 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ + P E + +LD E ++ GRHDF F S +R I Sbjct: 113 LLKKSEPSVFENAYLHHV-SNLDIEIIKRNISLFEGRHDFRYFMKTGSDTKSSVRRIFKT 171 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +L + FL QIR VG+L +G G+ + L + R LAP Sbjct: 172 ALYEKDDLYVLYFEGDGFLRAQIRLIVGALIKLGKGELKPEQIIDQLACKAR-YTSTLAP 230 Query: 236 PEGLYFDSVEY 246 P GLY + Y Sbjct: 231 PNGLYLCKIIY 241 >gi|294814496|ref|ZP_06773139.1| Pseudouridylate synthase [Streptomyces clavuligerus ATCC 27064] gi|326442885|ref|ZP_08217619.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] gi|294327095|gb|EFG08738.1| Pseudouridylate synthase [Streptomyces clavuligerus ATCC 27064] Length = 288 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 117/256 (45%), Gaps = 17/256 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG-----EIVVVHGAGRTDSGV 55 +R + + Y+G + GW RQ G ++QG IE A+ VT E+ V AGRTD+GV Sbjct: 10 VRVRLDLSYDGRDFSGWARQAGGRRTVQGEIEDALRTVTRSARPYELTV---AGRTDAGV 66 Query: 56 HALRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 HA QVAH DL E W L K L ++ + I F+ARFSA+ R Y Sbjct: 67 HARGQVAHVDLPAEVWAEHREKLLKRLAG--RLDRDVRIWRAEEAPAGFNARFSAVWRRY 124 Query: 113 LYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 YR+ + L +G LD M A+Q L+G HDF + + ++ IRT Sbjct: 125 AYRVSDHPGGVDPLLRGHVLWHDWPLDVAAMNAASQPLLGEHDFAAY-CKKREGATTIRT 183 Query: 172 IDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + +I V A +F H +RS VG+L VGDG K L A R Sbjct: 184 LQRLSWERDAAGVITATVRADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSA 243 Query: 231 GPLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 244 VHVVRPHGLTLEEVGY 259 >gi|301629805|ref|XP_002944022.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana) tropicalis] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 6/186 (3%) Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P + N +L I++ V FHAR A R Y Y ++ Sbjct: 2 QVVHFDTPLRRTPFAWVRGSNTFLP--PDIAVQWAQAVPASFHARACATARRYAYVLLQS 59 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++E R + + LD MR AAQHL+G HDFT+FR+ CQA +P++T+ + Sbjct: 60 PVRPSVESARVGWVFQPLDGAAMRAAAQHLLGEHDFTSFRASACQAKTPVKTLHRIGITR 119 Query: 180 FG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G +FLH +R+ +G L VG G+ + + + L A+ R P Sbjct: 120 RGAGPHGYWRFEFEGNAFLHHMVRNIMGCLIAVGQGRKPADWMAEVLAARSRDAAAPTFA 179 Query: 236 PEGLYF 241 P+GLYF Sbjct: 180 PDGLYF 185 >gi|256831855|ref|YP_003160582.1| tRNA pseudouridine synthase A [Jonesia denitrificans DSM 20603] gi|256685386|gb|ACV08279.1| tRNA pseudouridine synthase A [Jonesia denitrificans DSM 20603] Length = 310 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 121/268 (45%), Gaps = 28/268 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +IR + Y G+ + GW RQ S+QG++E A+ + GE + V AGRTD+GVHA Q Sbjct: 24 VIRIRCDVAYRGTDFVGWARQPGLRSVQGTLEDALERLMGERIAVTVAGRTDAGVHARGQ 83 Query: 61 VAHFDLVR---EWVP----VILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRS 111 V H D+ E +P +AL A L + + + ++ F ARFSA+ R+ Sbjct: 84 VVHCDVPGDRWERLPGRSDRTPGEALRAKLGGILPSDVVVRRVAPAPPGFDARFSALSRT 143 Query: 112 YLYRIITR-------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 Y YRI AP L W + LD E M A LVG DF F Sbjct: 144 YYYRIADDVMMRDPLTAPFVL-----W-VRSPLDVEAMNRGAAPLVGLRDFAAFCKPRPG 197 Query: 165 ASSPIRTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 AS+ IR + F + L+ V A +F H +R+ VG+ VG G L Sbjct: 198 AST-IRELQDFRWERVEQGPDEGLVRATVRADAFCHNMVRALVGASLDVGRGVRGEEWLV 256 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 +AL ++ R + P GL + V Y Sbjct: 257 QALTSKSRVNSSAVVQPHGLTLEQVAYP 284 >gi|254391364|ref|ZP_05006567.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] gi|197705054|gb|EDY50866.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] Length = 284 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 117/256 (45%), Gaps = 17/256 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG-----EIVVVHGAGRTDSGV 55 +R + + Y+G + GW RQ G ++QG IE A+ VT E+ V AGRTD+GV Sbjct: 6 VRVRLDLSYDGRDFSGWARQAGGRRTVQGEIEDALRTVTRSARPYELTV---AGRTDAGV 62 Query: 56 HALRQVAHFDLVRE-WVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 HA QVAH DL E W L K L ++ + I F+ARFSA+ R Y Sbjct: 63 HARGQVAHVDLPAEVWAEHREKLLKRLAG--RLDRDVRIWRAEEAPAGFNARFSAVWRRY 120 Query: 113 LYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 YR+ + L +G LD M A+Q L+G HDF + + ++ IRT Sbjct: 121 AYRVSDHPGGVDPLLRGHVLWHDWPLDVAAMNAASQPLLGEHDFAAY-CKKREGATTIRT 179 Query: 172 IDHFDVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + +I V A +F H +RS VG+L VGDG K L A R Sbjct: 180 LQRLSWERDAAGVITATVRADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSA 239 Query: 231 GPLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 240 VHVVRPHGLTLEEVGY 255 >gi|237752928|ref|ZP_04583408.1| tRNA pseudouridine synthase A [Helicobacter winghamensis ATCC BAA-430] gi|229375195|gb|EEO25286.1| tRNA pseudouridine synthase A [Helicobacter winghamensis ATCC BAA-430] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 19/252 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + M I YNG +FG+Q Q N S+ +E +F G + +GRTD GVH+ QV Sbjct: 10 FKVAMRIAYNGGAFFGFQSQSNVQSVANVLED-VFKSVGVFSKIAASGRTDKGVHSSAQV 68 Query: 62 AHFDLVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 ++ W + K LNA K++ + I ++ V FHARFSA RR Y Y + Sbjct: 69 ISLEIPYFWKNLENLKVCLNA--KLAPNLFIKHIWEVGDDFHARFSATRRGYCYVLSKHF 126 Query: 121 APLALEKGRAWLIPKSL--DCEN---MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +P +L P SL + +N ++ A + LVG H+F F+ S +R+I Sbjct: 127 SP--------FLTPFSLHYNLKNPNLIKQALKLLVGTHNFGAFKKQGSGEKSSVRSIFRA 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D+ F + FL +Q+R VG L + G T LE L + R P+A Sbjct: 179 DLREFKGFWILSFWGNGFLRSQVRLMVGFLLEIDKGNLTLEALEAQLNGEMRYRI-PIA- 236 Query: 236 PEGLYFDSVEYS 247 P GLY V+++ Sbjct: 237 PNGLYLSRVDFN 248 >gi|283768478|ref|ZP_06341390.1| tRNA pseudouridine synthase A [Bulleidia extructa W1219] gi|283104870|gb|EFC06242.1| tRNA pseudouridine synthase A [Bulleidia extructa W1219] Length = 320 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 117/247 (47%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y G+ Y GWQ QK G+SIQ IE + + E V +GRTD+ V+AL Q Sbjct: 1 MRYFKAIVAYVGANYCGWQSQKKGNSIQEKIEAVLSQINQEKTTVIASGRTDAKVNALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + +++L I + + VD+ FHARF +++YLYRI Sbjct: 61 CFQFQSEKNIDSYRWLGIFHSFL--PKDIYVKQVEEVDETFHARFLVEQKTYLYRIHLGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNS 179 + +K ++ + + L+ + MR + G H F +F S + + +RTI ++ Sbjct: 119 YDV-FQKDDSFQLREDLNLKEMRKCWKLFEGTHSFLSFNTSSLSEYPNQVRTIFRTELRK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+ + +L +R VG+ VG GK T ++++ L R AP +GL Sbjct: 178 ISDHLELEISGNGYLRHMVRILVGTCLEVGRGKLTIEEVQRMLNDPSRHYATKKAPAQGL 237 Query: 240 YFDSVEY 246 V Y Sbjct: 238 CLKEVSY 244 >gi|317051440|ref|YP_004112556.1| tRNA pseudouridine synthase A [Desulfurispirillum indicum S5] gi|316946524|gb|ADU66000.1| tRNA pseudouridine synthase A [Desulfurispirillum indicum S5] Length = 263 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 116/248 (46%), Gaps = 9/248 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ Y GWQ Q+N + +IQ +E A V + +HG+GRTD+GVHA Q+ Sbjct: 9 RIALKVAYDGTHYHGWQTQENAANTIQAILEHAAGSVCNHPLYIHGSGRTDTGVHARGQI 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H + +N+ L I + N VD+ FH+++S + Y Y I+ Sbjct: 69 CHLTTTSTIPLFKIIMGMNSML--PRDIRVRNAFDVDEDFHSQYSTHSKKYSYAILHGCQ 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SF 180 P L++ +W + +++D ++ H VG HDF R+ + +RTI V Sbjct: 127 PDPLQRLYSWHVRQTIDPARLQEELNHFVGEHDFKACRAKKATTKTTVRTIYSIGVRVES 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSL--KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + I FL IR VG+ + +G + + L ++DR G A P G Sbjct: 187 PHKLHIHFHGNGFLKHMIRIMVGTAVDRAIG---CLDRSIPEILLSRDRTRGGRTAAPCG 243 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 244 LVMEEVLY 251 >gi|296274435|ref|YP_003657066.1| tRNA pseudouridine synthase A [Arcobacter nitrofigilis DSM 7299] gi|296098609|gb|ADG94559.1| tRNA pseudouridine synthase A [Arcobacter nitrofigilis DSM 7299] Length = 240 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 5/241 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M I Y+G Y G QRQ N S++ + + ++ E + +GRTD VHA QV + Sbjct: 5 MTISYDGFSYQGSQRQTNKKSVEDRLIEVFKILNIEPKIT-LSGRTDKQVHATGQVFNIV 63 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + W + K + Y K+ +I I + V+ +FHARF A +R Y Y I T++ L Sbjct: 64 IPAYWSNFLKLKQVMNY-KLPSSIRIRKIQKVNDEFHARFHAKKRVYRYVISTKEVSPFL 122 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 ++ K ++ E ++ A + +G HDF F + + +R I + + Sbjct: 123 ANYVTFV--KEINEEKIKEAIKLFIGVHDFEYFHKSGSEKDNKVREIFDAKFYKYKDFYI 180 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 R A S+L +QIR VG L + +GK + DL+ L + P A P GLY V+ Sbjct: 181 FRFEANSYLRSQIRIMVGFLLKISEGKLSKNDLKAQLSREKYIYKTP-ALPNGLYLSQVK 239 Query: 246 Y 246 Y Sbjct: 240 Y 240 >gi|311064868|ref|YP_003971594.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum PRL2010] gi|310867188|gb|ADP36557.1| TruA tRNA pseudouridine synthase A [Bifidobacterium bifidum PRL2010] Length = 303 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 44/286 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDS 53 ++R + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+ Sbjct: 3 VMRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDT 62 Query: 54 GVHALRQVAHFDLVREWV----------PVILCKALNAYLKISDTISILNLSIVDKQFHA 103 GVHA QV H D+ E + P + K + +D I+I ++++ F A Sbjct: 63 GVHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPAD-ITIHDVTVAPSGFDA 121 Query: 104 RFSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R+Y+YR+ R + + +G + LD M AA +G HDF +F + + Sbjct: 122 RFSALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPN 181 Query: 163 CQASSPIRTID----------HFDVNSFG----------NLIEIRVVARSFLHTQIRSFV 202 ++ IR + V+ G +L+ +VA +F +RS V Sbjct: 182 PGGTT-IREVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKE--CGPLAPPEGLYFDSVEY 246 G VG GK STD + A +E GP+A P+GL + V Y Sbjct: 241 GGCIQVGMGK-RSTDWFREKMAVPLREGSTGPIA-PQGLTLEHVAY 284 >gi|257069454|ref|YP_003155709.1| pseudouridylate synthase I [Brachybacterium faecium DSM 4810] gi|256560272|gb|ACU86119.1| pseudouridylate synthase I [Brachybacterium faecium DSM 4810] Length = 346 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 124/271 (45%), Gaps = 29/271 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++QG +EKA+ + V AGRTD+GVHA QV Sbjct: 34 TRLRLDLSYDGTDFHGWAAQPGQRTVQGELEKALRRIARIPARVTVAGRTDAGVHARGQV 93 Query: 62 AHFDLVREWV-------PVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSY 112 H DL + + P +AL + L + + + + V F ARF A R Y Sbjct: 94 CHLDLPDDVLATLPGRSPRTPAEALVSRLAGVLPEDVVVHVAREVPDDFDARFGAQWRRY 153 Query: 113 LYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 YRI R A PL + R + LD E M A+ L+G HDF ++ A++ I Sbjct: 154 RYRISDRPAAHDPLRRDVLRHR---RPLDVEAMARASAPLLGEHDFLSYCRPREGATT-I 209 Query: 170 RTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDL- 218 R + G LI VVA +F H +RS VG+L VG+G+ W + L Sbjct: 210 RELRELRWERPGEGRADEGLIVATVVADAFCHHMVRSLVGALLGVGEGRRDESWPAEVLA 269 Query: 219 --EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +D PL PP+GL D V Y Sbjct: 270 ARTREAARRDGVGAAPLCPPQGLTLDHVAYP 300 >gi|309802980|ref|ZP_07697081.1| tRNA pseudouridine synthase A [Bifidobacterium dentium JCVIHMP022] gi|308220447|gb|EFO76758.1| tRNA pseudouridine synthase A [Bifidobacterium dentium JCVIHMP022] Length = 302 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 129/287 (44%), Gaps = 46/287 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+G Sbjct: 1 MRLRIDLAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREW---------VPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 VHA QV H D+ VP ++ + + I+I ++ + F ARF Sbjct: 61 VHASHQVCHLDVSETILARCVGHMDVPPVVALTRRLQRMLPNDITIHGINEAPQGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y+YRI R + + +G + LD E M AA +G HDF +F + + Sbjct: 121 SALERTYVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNPG 180 Query: 165 ASS------------PIRTI--------DHFDVNSF-GNLIEIRVVARSFLHTQIRSFVG 203 ++ P R + + + S L +VA +F +RS V Sbjct: 181 GTTIREVKTAYWRRIPQRPLIDGEMTMGERYHTPSMESGLACFTIVADAFARNMVRSLVN 240 Query: 204 SLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG GK W + + L+ GP+A P+GL + +EY Sbjct: 241 GCVQVGIGKRSLDWFADKMATPLR---EGSTGPIA-PQGLTLEHIEY 283 >gi|219682884|ref|YP_002469267.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis AD011] gi|254789603|sp|B8DW40|TRUA_BIFA0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219620534|gb|ACL28691.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis AD011] gi|289178185|gb|ADC85431.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis BB-12] Length = 298 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 130/286 (45%), Gaps = 47/286 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-----GEIVVVHGAGRTDSGV 55 M R + + YNG+ + GW Q ++QG++E+A+ +T G + + AGRTD+GV Sbjct: 1 MTRLRIDLAYNGAAFHGWAAQPGCRTVQGTVEEALRRITRMPDAGSLRLTV-AGRTDAGV 59 Query: 56 HALRQVAHFDLVREW-------VPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFS 106 HA QV H D+ + + + +AL L + D I+I +S+ F ARFS Sbjct: 60 HATHQVCHVDVPDQTLGQCVGHMNLTPVQALQTRLSRMMPDDIAIHGISVAPAGFDARFS 119 Query: 107 AIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R+Y+YRI + P K AW + LD M AA +G HDF +F +I Sbjct: 120 ALERTYVYRIADARVPWDPRLKDFAWRTDRELDIAQMNAAAALTLGLHDFGSF-AIANPG 178 Query: 166 SSPIRTID---------------------HFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 + IR + H G L+ +VA +F +RS VG+ Sbjct: 179 GTTIREVKTAYWQRVPTRPLLGPGMGERYHTPAVESG-LLCFTIVADAFARNMVRSLVGA 237 Query: 205 LKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG GK W + + L+ GP+A P+GL + + Y Sbjct: 238 CVQVGMGKRDVDWFAGKMRVPLR---EGSTGPIA-PQGLTLEHIAY 279 >gi|147865780|emb|CAN81146.1| hypothetical protein VITISV_020811 [Vitis vinifera] Length = 403 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 120/253 (47%), Gaps = 24/253 (9%) Query: 17 GWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV 73 GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA QVAHF + + Sbjct: 124 GWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWGQVAHFLTPFNYDGL 183 Query: 74 -ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 + ALN L I + +S +FHARFS + Y Y+I + + Sbjct: 184 ESIHAALNGLL--PPDIRVREISPAVPEFHARFSXKSKIYHYKIYNDAVMDPFLRHYVYH 241 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSF---------- 180 L+ MR AA+H G+HDF+ F S + ++ +P++ I FDVN Sbjct: 242 SVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFDVNEMMFLELIVNCI 301 Query: 181 ---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL---A 234 G L+++ V FL+ Q+R+ V L +G + L +DRKE A Sbjct: 302 IAQGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALSA 361 Query: 235 PPEGLYFDSVEYS 247 PP GL SV+Y+ Sbjct: 362 PPHGLCLMSVKYN 374 >gi|313140894|ref|ZP_07803087.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] gi|313133404|gb|EFR51021.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] Length = 304 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 44/286 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDS 53 ++R + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+ Sbjct: 4 VMRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDT 63 Query: 54 GVHALRQVAHFDLVREWV----------PVILCKALNAYLKISDTISILNLSIVDKQFHA 103 GVHA QV H D+ E + P + K + +D I+I ++++ F A Sbjct: 64 GVHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPAD-ITIHDVTVAPSGFDA 122 Query: 104 RFSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R+Y+YR+ R + + +G + LD M AA +G HDF +F + + Sbjct: 123 RFSALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPN 182 Query: 163 CQASSPIRTID----------HFDVNSFG----------NLIEIRVVARSFLHTQIRSFV 202 ++ IR + V+ G +L+ +VA +F +RS V Sbjct: 183 PGGTT-IREVKTAYWRRIPTRPLVVDGVGERYRTPAAESDLLCFTIVADAFARNMVRSLV 241 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKE--CGPLAPPEGLYFDSVEY 246 G VG GK STD + A +E GP+A P+GL + V Y Sbjct: 242 GGCIQVGMGK-RSTDWFREKMAVPLREGSTGPIA-PQGLTLEHVAY 285 >gi|94968472|ref|YP_590520.1| tRNA pseudouridine synthase A [Candidatus Koribacter versatilis Ellin345] gi|94550522|gb|ABF40446.1| tRNA pseudouridine synthase A [Candidatus Koribacter versatilis Ellin345] Length = 257 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 117/255 (45%), Gaps = 14/255 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + + Y+G + GWQ Q +IQG++ + I +TGE + G+GRTD+GVHAL QVA Sbjct: 5 FKITLAYDGHEFHGWQIQPGKPTIQGTLAETIERITGEQTLPQGSGRTDAGVHALGQVAS 64 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 L L ALN K+ +I L + FHAR SA ++Y YRI Sbjct: 65 VALQTPIPADGLHIALND--KLPPSIRALTVGEAAPDFHARHSAKGKTYRYRIYRAAICS 122 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF--- 180 W P LD M+ A + G HDFT+F + + IR + D S Sbjct: 123 PFLAHYVWHYPWRLDESVMQSATAFIQGEHDFTSFAASDPDRAQRIRDAEDEDGPSNVRT 182 Query: 181 ---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 G+ + V FLH +R+ VG+ G + + + K L+ + R G Sbjct: 183 IYDAVWRTEGHELIFEVRGNGFLHHMVRNLVGTFVDFGKWQHPAESMAKILREKSRSAAG 242 Query: 232 PLAPPEGLYFDSVEY 246 P AP GLY +VEY Sbjct: 243 PAAPASGLYLVNVEY 257 >gi|86157969|ref|YP_464754.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] gi|85774480|gb|ABC81317.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] Length = 272 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 123/257 (47%), Gaps = 20/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL QV Sbjct: 6 YALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GVRAQLHVAARTDAGVHALAQVVS 64 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P L + LN L + I +L+ + V FHAR SA R+Y+Y ++ P Sbjct: 65 FSARAALDPAALRRGLNEGLP--EGILVLDAARVGPSFHARGSAASRTYVY-LVGAPPPE 121 Query: 124 ALEKGRAWLIPKS-----------LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 L + AW +P + LD MR A VG HDF F Q + +RT+ Sbjct: 122 GL-RPYAWTLPDARAFPELAEVPPLDAAAMREALGAAVGEHDFVGFARPGEQRGT-VRTL 179 Query: 173 DHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +V G L+ + + + FL +R+ VG+ VG G+ D+ + L A + Sbjct: 180 LRAEVVEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAVGLGR-APPDVIRTLLATRGRYR 238 Query: 231 GPLAPPEGLYFDSVEYS 247 G AP GL +V Y Sbjct: 239 GVRAPGWGLTLAAVRYP 255 >gi|117927545|ref|YP_872096.1| tRNA pseudouridine synthase A [Acidothermus cellulolyticus 11B] gi|117648008|gb|ABK52110.1| tRNA pseudouridine synthase A [Acidothermus cellulolyticus 11B] Length = 297 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 125/262 (47%), Gaps = 22/262 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + G+ RQ ++Q +E+A+ +V E V AGRTD+GVHA Q Sbjct: 20 RLRIDLGYDGTDFAGFARQPGLRTVQAEVERALAVVLRLPEPPPVTAAGRTDAGVHARGQ 79 Query: 61 VAHFDLVREWVPVILCKA-------------LNAYLKISDTISILNLSIVDKQFHARFSA 107 V H D+ + + V+ LN L D I++ + + F ARFSA Sbjct: 80 VLHVDVPIDALRVVGAAETGAADAVAQLAARLNGVLP--DDIAVHAVGLAPPGFDARFSA 137 Query: 108 IRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R Y YR+ R+ PL W P+ LD M A L+G HDF F A+ Sbjct: 138 LARRYSYRVADRRWDPLRRRDTLRW--PRPLDETAMNAAGAALLGEHDFAAFCRRRENAT 195 Query: 167 SPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + IR + F+ G+ + + +V A +F H+ +R+ VG++ VG G+ + L A+ Sbjct: 196 T-IRRLLRFEWLRDGDGVLVAQVEADAFCHSMVRALVGAVLAVGAGRRPVGWPAEVLAAR 254 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R + PP GL + V Y Sbjct: 255 ARDPAVTVVPPHGLTLEEVCYP 276 >gi|256390175|ref|YP_003111739.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928] gi|256356401|gb|ACU69898.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928] Length = 284 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 16/258 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW Q ++ G + A+ V + V + AGRTD+GVHA QV Sbjct: 10 VRVRLDLAYDGTHFSGWAIQPKRRTVCGELTSALSTVLRQDVTLVVAGRTDAGVHASGQV 69 Query: 62 AHFDLVRE-WV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AH D+ E W L + L A L + + + F ARF+A+ R Y YR+ Sbjct: 70 AHLDVPLELWAEHEERLLRRLAAVLP--GDVRVWSAVPAPVGFDARFAAMGRRYAYRVTD 127 Query: 119 RQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD- 176 P L + P++LD M AA L+G HDF +F + ++ IR + + Sbjct: 128 AAYGPHPLRRNDVTWHPRTLDPALMNEAAAALLGEHDFASF-CKKREGATTIRCLTRLEW 186 Query: 177 -------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + G L+ V A +F H+ +RS VG+L VG+G+ D + L + R Sbjct: 187 TREAPTSLTPVGLLV-ADVRADAFCHSMVRSLVGALLAVGEGRRPVGDPGRILAEEVRSP 245 Query: 230 CGPLAPPEGLYFDSVEYS 247 +APP+GL + V Y Sbjct: 246 EVKVAPPQGLTLEEVVYP 263 >gi|283455394|ref|YP_003359958.1| 50S ribosomal protein L17 [Bifidobacterium dentium Bd1] gi|283102028|gb|ADB09134.1| rplQ 50S ribosomal protein L17 [Bifidobacterium dentium Bd1] Length = 296 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 126/281 (44%), Gaps = 46/281 (16%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSGVHALRQ 60 + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+GVHA Q Sbjct: 1 MAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTGVHASHQ 60 Query: 61 VAHFDLVREW---------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V H D+ VP ++ + + I+I ++ + F ARFSA+ R+ Sbjct: 61 VCHLDISETILARCVGHMNVPPVVALTRRLQRMLPNDITIHGINEAPQGFDARFSALERT 120 Query: 112 YLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS--- 167 Y+YRI R + + +G + LD E M AA +G HDF +F + + ++ Sbjct: 121 YVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNPGGTTIRE 180 Query: 168 ---------PIRTI--------DHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 P R + + + S L +VA +F +RS V VG Sbjct: 181 VKTAYWRRIPQRPLVDGEMTMGERYRTPSMESGLACFTIVADAFARNMVRSLVNGCVQVG 240 Query: 210 DGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GK W + + L+ GP+A P+GL + +EY Sbjct: 241 IGKRSLDWFADKMATPLR---EGSTGPIA-PQGLTLEHIEY 277 >gi|220913398|ref|YP_002488707.1| tRNA pseudouridine synthase A [Arthrobacter chlorophenolicus A6] gi|219860276|gb|ACL40618.1| tRNA pseudouridine synthase A [Arthrobacter chlorophenolicus A6] Length = 297 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 122/263 (46%), Gaps = 19/263 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW Q ++QG++E+A+ L+ + V AGRTD+GVHA QV Sbjct: 17 LRIRLDLSYDGGPFSGWAVQPGRRTVQGTLEEALELLVRRPLRVTVAGRTDAGVHARGQV 76 Query: 62 AHFDLVR-EWVPVI--------------LCKALNAYL-KISDTISILNLSIVDKQFHARF 105 H DL EW+ + L ALN L ++ + + ++ F ARF Sbjct: 77 VHLDLAESEWLGMARGHELDPATAMTRRLRGALNRVLGDLTGAVQVRGIAPAPDGFDARF 136 Query: 106 SAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R Y YRI A LE+ LD E + A L+G +F +F + Sbjct: 137 SALWRRYSYRIADGPALWDPLERAFTLWHKNPLDVELLNQGAARLLGLQNFLSFCKPR-E 195 Query: 165 ASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++ IR + F+ + I V A +F H +R+ +GS VG+G L + L Sbjct: 196 GATTIRELQRFEFARAEDGAIVATVQADAFCHNMVRALIGSALYVGEGTVEPGWLYERLL 255 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 AQ R LA P L F+ V Y Sbjct: 256 AQKRDAKSVLAAPHPLVFEEVAY 278 >gi|306823540|ref|ZP_07456915.1| tRNA pseudouridine synthase A [Bifidobacterium dentium ATCC 27679] gi|304553247|gb|EFM41159.1| tRNA pseudouridine synthase A [Bifidobacterium dentium ATCC 27679] Length = 296 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 126/281 (44%), Gaps = 46/281 (16%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSGVHALRQ 60 + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+GVHA Q Sbjct: 1 MAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTGVHASHQ 60 Query: 61 VAHFDLVREW---------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V H D+ VP ++ + + I+I ++ + F ARFSA+ R+ Sbjct: 61 VCHLDVSETILARCVGHMDVPPVVALTRRLQRMLPNDITIHGINEAPQGFDARFSALERT 120 Query: 112 YLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS--- 167 Y+YRI R + + +G + LD E M AA +G HDF +F + + ++ Sbjct: 121 YVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNPGGTTIRE 180 Query: 168 ---------PIRTI--------DHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 P R + + + S L +VA +F +RS V VG Sbjct: 181 VKTAYWRRIPQRPLIDGEMTMGERYHTPSMESGLACFTIVADAFARNMVRSLVNGCVQVG 240 Query: 210 DGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GK W + + L+ GP+A P+GL + +EY Sbjct: 241 IGKRSLDWFADKMATPLR---EGSTGPIA-PQGLTLEHIEY 277 >gi|78185547|ref|YP_377981.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9902] gi|123743513|sp|Q3AW68|TRUA_SYNS9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78169841|gb|ABB26938.1| tRNA pseudouridine synthase [Synechococcus sp. CC9902] Length = 300 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y GS + GWQRQ N S+Q +E AI L + AGRTD+GVHA QV Sbjct: 17 RIALSLQYEGSDFCGWQRQNNARSVQAVLETAIAQLDPLRPIQSFAAGRTDAGVHAAAQV 76 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD +W P ALN L S I + + +HA +SA+ R Y Y I Sbjct: 77 VHFDCSGPIPAAKWAP-----ALNGRLPAS--IRVRESVERPRDWHACYSAVYRRYRYII 129 Query: 117 ITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + P W L+ ENMR+A + ++G HDF F + TI Sbjct: 130 HNGRRPNLFLTPWTWHRYHHRLNEENMRVALEGMIGLHDFAAFMRAGSRRPHSRTTIQDV 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G+LI + + A FL+ +R + L VG+ + + E+ + + R + AP Sbjct: 190 LVEREGDLIRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVKAFEQRWRDRRRDQVREAAP 249 Query: 236 PEGL 239 GL Sbjct: 250 ARGL 253 >gi|270014158|gb|EFA10606.1| hypothetical protein TcasGA2_TC012867 [Tribolium castaneum] Length = 315 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 128/296 (43%), Gaps = 51/296 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAI-FLVTGEIVVVHGAGRTDS 53 RY + Y G+ + G QRQ G S++QG +E A+ L VV+ + RTDS Sbjct: 5 RYLLHFSYIGTPFMGAQRQVTGRMPRPDDPSTVQGQLEMALKRLNPTNDPVVYLSSRTDS 64 Query: 54 GVHALRQVAHFDLVR----EWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAI 108 GVHAL H DL R E+ P + LN Y ++ I ++ V FH R +AI Sbjct: 65 GVHALNSTCHVDLYRSNELEYEPKTITICLNRYFDKNEVPIRVIKTYWVPPDFHCRHTAI 124 Query: 109 RRSYLYRI------ITRQA------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 R+YLYRI +T A P+ + + S + + M+ AA+ G HDF Sbjct: 125 SRTYLYRIAIAKTGVTEHATILNLLPIEEYQRCLFFYCDSFNIDEMKEAAKVFEGLHDFR 184 Query: 157 TF--RSIHCQASSPIRTIDHFDV--------NSFG------------NLIEIRVVARSFL 194 TF R H R + DV +SF +I V A FL Sbjct: 185 TFMGRGSHDPDKITRRVVTRVDVCDGRALTYSSFSWPRFASGSAENYQFYDIYVQATGFL 244 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK---ECGPLAPPEGLYFDSVEYS 247 + Q+R V SL VG GK T +L+ L+ + E P GLY VEYS Sbjct: 245 YRQVRRMVASLIAVGQGKKTRRELKLMLEVPSHRSWDERIKTVPAYGLYLCEVEYS 300 >gi|162456345|ref|YP_001618712.1| tRNA pseudouridine synthase A [Sorangium cellulosum 'So ce 56'] gi|161166927|emb|CAN98232.1| tRNA pseudouridine synthase A [Sorangium cellulosum 'So ce 56'] Length = 281 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 7/245 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + + Y+G + G+ RQ++ ++ G + A+ ++ I + GA RTD+GVHA Q F Sbjct: 1 MLSVAYDGRPFAGFARQRDQRTVSGELLGALRVIDPGIREIRGASRTDAGVHARDQRVAF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P A +L D I I ++V F RF ++R+ Y Y I+ Sbjct: 61 DTTAPLPPRGWVLATARHLP--DEIVIRRAAVVRLGFSPRFESLRKRYRYLILRDLVRDP 118 Query: 125 LEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN---S 179 RAW + D E R A G HDF FR+ + ++ +RT+ +++ + Sbjct: 119 FLSRRAWRVEGITDEAIERARAEALAAKGTHDFAAFRTSADERTTTVRTLYGVELSLDPA 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ I V +FLH +R VG+L V G + +AL + DR++ G APP+GL Sbjct: 179 DPRVVRIDVEGNAFLHNMVRILVGTLMDVARGHLAPGAIARALSSLDRRDAGITAPPDGL 238 Query: 240 YFDSV 244 Y + + Sbjct: 239 YLERI 243 >gi|78187037|ref|YP_375080.1| tRNA pseudouridine synthase A [Chlorobium luteolum DSM 273] gi|123730052|sp|Q3B3P4|TRUA_PELLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78166939|gb|ABB24037.1| tRNA pseudouridine synthase [Chlorobium luteolum DSM 273] Length = 253 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 108/240 (45%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 +EY+G+ Y GWQRQ G ++QG +E + + E V + AGRTD GVHAL QV +F Sbjct: 8 VEYDGTPYAGWQRQPGGIVTVQGELEACLSRILQERVNLAAAGRTDRGVHALGQVVNFQT 67 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + +LN L DTI + VD +FHARFSA R Y Y ++ + P A+ Sbjct: 68 ASSLELQRIAHSLNCLLP--DTIRVDCPQEVDMEFHARFSAAERQYRYFLM--EEPSAVF 123 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 A + LD M A L G HDF+ F + + ++ + Sbjct: 124 GRFAGCSSRPLDLPLMHSLAVTLKGIHDFSAFSREDRDGTGSLCSVRMAGWYRHRGFLVF 183 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL + +R VG++ +G G+ + L A A GL+ V Y Sbjct: 184 HIAANRFLRSMVRGLVGAMMDIGAGRLDPCSFKAMLDADAHARRVRPAAASGLFLSRVVY 243 >gi|255281297|ref|ZP_05345852.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] gi|255268254|gb|EET61459.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] Length = 280 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 119/274 (43%), Gaps = 35/274 (12%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAI--------------FLVTGEIVV------ 44 + + Y+G+ Y GW+ + +IQG +E + + VV Sbjct: 7 LTVTYDGTRYHGWEAKPGIEMTIQGKLEAVLTKMLAFPDDVPVQSLIAPAASVVSCNPGA 66 Query: 45 ------------VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 V GAGRTD+GVHA A+ L +P + LN YL + I + Sbjct: 67 ADGMPGCPVPVKVIGAGRTDAGVHAREMTANVHLDTAMLPGDIRDYLNRYL--PEDICVR 124 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + IV +FH+R++A ++Y Y T ++ +++ K+ D M+ AA +L G Sbjct: 125 EVCIVSDRFHSRYNATGKTYRYTCFTGPLKPVFDRKYVYVLDKTPDIAAMKKAAGYLCGT 184 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 HDF +F S +RTID ++ + + FL +R G+L G G+ Sbjct: 185 HDFASFCGNPKMKKSTVRTIDSIEITQNNSYLYFMYHGNGFLQHMVRILTGTLLETGYGR 244 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + + L A+ R G LAP +GL V+Y Sbjct: 245 RSPESMPELLAARKRALAGFLAPAQGLCLMKVDY 278 >gi|194336595|ref|YP_002018389.1| tRNA pseudouridine synthase A [Pelodictyon phaeoclathratiforme BU-1] gi|259550418|sp|B4SA76|TRUA_PELPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|194309072|gb|ACF43772.1| tRNA pseudouridine synthase A [Pelodictyon phaeoclathratiforme BU-1] Length = 243 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 112/242 (46%), Gaps = 5/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + +EY+G+ + GWQRQ ++QG IE A+ + E + + AGRTD GVHA Q A+F Sbjct: 6 VTVEYDGTSFAGWQRQSGAIVTVQGEIEVALGKILQEKISLAAAGRTDKGVHARAQTANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 P + +LN+ L TI I N VD FHAR SA R Y Y +I + P A Sbjct: 66 FTASSLEPSRIVHSLNSLLP--QTIRISNPEEVDADFHARHSAKERQYRYFLI--EEPSA 121 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + A LD M+ A LVG HDF+ F I ++ + + Sbjct: 122 IYGRFAGCSFGKLDVAIMQQMAAILVGTHDFSAFSKEDRDNPGRICSVTACKWYPCKHYL 181 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +R+ A FL + +R V ++ G G+ + D + L+ A P GL+ V Sbjct: 182 VLRISADRFLRSMVRYLVDAMIRAGKGRLSVGDFCRMLETGVTTSQLNPALPAGLFLWDV 241 Query: 245 EY 246 Y Sbjct: 242 LY 243 >gi|91215693|ref|ZP_01252663.1| putative tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] gi|91186159|gb|EAS72532.1| putative tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] Length = 224 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 5/222 (2%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV-ILCKALNAYLK 84 S+Q + A+ E V V GAGRTD+GVHA VAHFD ++ +L LN+ L Sbjct: 5 SVQSQVNLALKTALQETVDVVGAGRTDTGVHASGYVAHFDSSQKIFDFKMLAFKLNSIL- 63 Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 I++ ++ V FHARF AI R+Y Y II + P ++ GR++L+ L+ + M+ Sbjct: 64 -PPDIAVQSVVGVKDDFHARFDAISRTYRYSIIQTKDPFSV--GRSYLVKNELNLQVMQN 120 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 A+ L +F +F + + I+ + G+ + + A FL +R+ VG+ Sbjct: 121 ASNLLFNHKNFKSFSKVKTDVYTFDCHIEKVEWQKEGHHLFFEITANRFLRNMVRAIVGT 180 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L VG K + + + A+DR + G P L +++Y Sbjct: 181 LIEVGLEKISVEEFNDIILAKDRSKAGKSVPAHALVLTNIKY 222 >gi|254819223|ref|ZP_05224224.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC 13950] Length = 251 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 26/239 (10%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP-------------- 72 + G +++A+ + V + AGRTD+GVHA QVAH D+ +P Sbjct: 1 MAGVLDEALTTIFRTPVRLRAAGRTDAGVHATGQVAHVDVPAAALPNAYSRAPHVGEAEF 60 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR--- 129 + L + L +L + ++++ F ARFSA+RR Y+YR+ T AP ++ + Sbjct: 61 LPLLRRLGRFLPTD--VRVVDIVRAPAGFDARFSALRRHYVYRLST--APWGVDPQQVRY 116 Query: 130 --AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 AW P+ LD E M A++ L+G HDF F H + ++ IR + + G+LI R Sbjct: 117 VTAW--PRPLDVEAMATASRDLLGLHDFAAF-CRHRENATTIRDLQRLEWTREGDLITAR 173 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V A +F + +RS VG+L VG+ + + + L A R AP GL V+Y Sbjct: 174 VSADAFCWSMVRSLVGALLAVGEHRRPVSWCRELLSATARSSDYATAPAHGLTLVGVDY 232 >gi|224283738|ref|ZP_03647060.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] Length = 298 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 44/279 (15%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSGVHALRQ 60 + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+GVHA Q Sbjct: 5 LAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHASHQ 64 Query: 61 VAHFDLVREWV----------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 V H D+ E + P + K + +D I+I ++++ F ARFSA+ R Sbjct: 65 VCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPAD-ITIHDVTVAPSGFDARFSALER 123 Query: 111 SYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y+YR+ R + + +G + LD M AA +G HDF +F + + ++ I Sbjct: 124 TYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNPGGTT-I 182 Query: 170 RTID----------HFDVNSFG----------NLIEIRVVARSFLHTQIRSFVGSLKLVG 209 R + V+ G +L+ +VA +F +RS VG VG Sbjct: 183 REVKTAYWRRIPTRPLVVDGVGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQVG 242 Query: 210 DGKWTSTDLEKALQAQDRKE--CGPLAPPEGLYFDSVEY 246 GK STD + A +E GP+A P+GL + V Y Sbjct: 243 MGK-RSTDWFREKMAVPLREGSTGPIA-PQGLTLEHVAY 279 >gi|257054500|ref|YP_003132332.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017] gi|256584372|gb|ACU95505.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017] Length = 300 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 127/278 (45%), Gaps = 51/278 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSGV 55 +R + + Y+G+ + GW RQ ++QG +E A+ + G +VV AGRTD+GV Sbjct: 15 VRLRIDLSYDGTDFSGWARQPGRRTVQGVLEDALAKQPPGASIAGPVVV---AGRTDAGV 71 Query: 56 HALRQVAHFDLVR-------------------EWVPVILCKALNAYLKISDTISILNLSI 96 HA+ QV H D+ R +W L + L A + +L++ Sbjct: 72 HAIGQVVHVDVTRLAGETRSRMPISSDGLPDLDWARYRLNRVLPA------DVRVLSIRR 125 Query: 97 VDKQFHARFSAIRRSYLYRIITRQ---APLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 F ARFSA++R Y Y++ +PL AW P+ L + M AA L+G H Sbjct: 126 APAGFDARFSAVKRHYRYQVSDAPWGVSPLRRRDTLAW--PRPLSVDAMNEAASSLLGLH 183 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE----IRVVARSFLHTQIRSFVGSLKLVG 209 DF F C+ TI + + E + V A +F H+ +RS VG+L VG Sbjct: 184 DFAAF----CKRREGATTIRELMELRWCRVDEYELHLSVSADAFCHSMVRSLVGALLWVG 239 Query: 210 DGKWTSTDLEKALQA-QDRKECGPLAPPEGLYFDSVEY 246 DG+ D+ L+ + R+ +AP GL V+Y Sbjct: 240 DGR---RDVGWPLEVLRSRQRSSVVAPAHGLTLVKVDY 274 >gi|119718091|ref|YP_925056.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614] gi|119538752|gb|ABL83369.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614] Length = 268 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 120/254 (47%), Gaps = 16/254 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q ++QG + A+ V E+ VV AGRTD+GVHA Sbjct: 1 MRIRLDLAYDGTDFHGWASQPGLRTVQGELSDALATVLRVPEVAVV-CAGRTDAGVHARG 59 Query: 60 QVAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV H DL + L + LN L + + F ARF A+ R Y YRI Sbjct: 60 QVVHADLDGLEPATVEGLVRRLNGRLPAD--VRVRRAVEAPAGFDARFGALWRRYAYRIA 117 Query: 118 TRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 A PL AW P++LD + M A+ LVGRHDF +F + ++ IRT+ Sbjct: 118 DTPAVVDPLTRSHVLAW--PRALDLDAMNAASAFLVGRHDFASF-CKQREGATTIRTLLE 174 Query: 175 FD--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + G L+ V A +F H+ +RS VG L VG+ + E L+A+ R Sbjct: 175 LSWARDPAGVLVGT-VRADAFCHSMVRSLVGCLIAVGEARKPVAWAEDILRAEARDPAVA 233 Query: 233 LAPPEGLYFDSVEY 246 + GL + V Y Sbjct: 234 VVHAHGLTLEEVAY 247 >gi|310287995|ref|YP_003939254.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum S17] gi|309251932|gb|ADO53680.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum S17] Length = 298 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 44/279 (15%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSGVHALRQ 60 + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+GVHA Q Sbjct: 5 LAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHASHQ 64 Query: 61 VAHFDLVREWV----------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 V H D+ E + P + K + +D I+I ++++ F ARFSA+ R Sbjct: 65 VCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPAD-ITIHDVTVAPSGFDARFSALER 123 Query: 111 SYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +Y+YR+ R + + +G + LD M AA +G HDF +F + + ++ I Sbjct: 124 TYVYRVADRASEVDPRLRGFVLHLDADLDVVAMNEAAAMTIGLHDFGSFATPNPGGTT-I 182 Query: 170 RTID----------HFDVNSFG----------NLIEIRVVARSFLHTQIRSFVGSLKLVG 209 R + V+ G +L+ +VA +F +RS VG VG Sbjct: 183 REVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQVG 242 Query: 210 DGKWTSTDLEKALQAQDRKE--CGPLAPPEGLYFDSVEY 246 GK STD + A +E GP+A P+GL + V Y Sbjct: 243 MGK-RSTDWFREKMAVPLREGSTGPIA-PQGLTLEHVAY 279 >gi|332669550|ref|YP_004452558.1| tRNA pseudouridine synthase A [Cellulomonas fimi ATCC 484] gi|332338588|gb|AEE45171.1| tRNA pseudouridine synthase A [Cellulomonas fimi ATCC 484] Length = 316 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 113/234 (48%), Gaps = 26/234 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDS 53 +R + + Y+G+ + GW RQ ++QG +E A+ V HG AGRTD+ Sbjct: 17 VRLRLDLAYDGTSFSGWARQPALRTVQGVLEDALATVL--RTAAHGEPAPHVTVAGRTDA 74 Query: 54 GVHALRQVAHFDL-------VREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ VR AL A L + + + +++ F AR Sbjct: 75 GVHARGQVAHMDVAPHVLDAVRGRSDRTPTDALVARLAGVLPADVVVHRVAVAPLGFDAR 134 Query: 105 FSAIRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+RR Y YRI A L + + LD M AA+ LVGRHDF + Sbjct: 135 FSALRRRYAYRICDDSGARDPLSRAHVLWHRRPLDVAAMDAAARTLVGRHDFAAYCKPR- 193 Query: 164 QASSPIRTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + ++ IRT++ F + L+ RV A +F H+ +R+ VG+ VG+G+ Sbjct: 194 EGATTIRTLEEFVWERASGGAEAGLVVARVQADAFCHSMVRALVGASVAVGEGR 247 >gi|311896534|dbj|BAJ28942.1| putative tRNA pseudouridine synthase A [Kitasatospora setae KM-6054] Length = 302 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 122/263 (46%), Gaps = 24/263 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA--IFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW RQ+ ++QG +E A I L + E + AGRTD+GVHA Q Sbjct: 21 RIRLDLAYHGAEFSGWARQRERRTVQGELEDALRIVLRSEENFPLTVAGRTDAGVHARGQ 80 Query: 61 VAHFDLVREWVPVILCKALNAYL------KISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAH DL P L L ++ + + ++ F ARF+AI R Y Y Sbjct: 81 VAHVDL-----PDALWAQHGEKLLRRLAGRLPADVRVYRVAEAPHGFDARFAAIWRRYAY 135 Query: 115 RIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI- 172 R+ + L +G + LD E M AA+ LVG HDF + + ++ IRT+ Sbjct: 136 RVADHPGGVDPLLRGHVLWHDRPLDLEKMNEAARLLVGEHDFAAY-CKKREGATTIRTLL 194 Query: 173 ----DHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + ++ + G+L V A +F H +R+ VG++ LVGDG K L Sbjct: 195 ELHWERVPIDPYAAQEGSLAVATVRADAFCHNMVRALVGAMLLVGDGHRPVEFPGKVLAG 254 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 R + P GL + V Y Sbjct: 255 GVRDSAVNVIRPHGLTLEEVGYP 277 >gi|116075742|ref|ZP_01473001.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9916] gi|116067057|gb|EAU72812.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9916] Length = 278 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 114/240 (47%), Gaps = 6/240 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH--GAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+ G+S+Q ++++AI + I VH AGRTD+GVHA Q Sbjct: 4 RIALSLQYEGSAFCGWQRQRQGNSVQAALDEAISQLD-PIRPVHTVAAGRTDAGVHAAGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN ++ TI + +HA +SA R Y Y I + Sbjct: 63 VVHFDCCGPIPAWRWAPALNG--RLPGTIRVREAVERPLDWHACYSATYRRYRYTIYNGR 120 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P W LD M A Q L+G HDF F + + TI + Sbjct: 121 RPNLFLTPWTWHRYQARLDDSLMGEALQGLLGLHDFGAFMRAGSRRAHSRTTIQDVSLER 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R +G L VG+ + + E+ + + R E APP+GL Sbjct: 181 EGDLVTVEIQASGFLYGMVRLLMGQLVAVGEHRLSLEAFERRWRERRRSEVKDAAPPQGL 240 >gi|289427598|ref|ZP_06429310.1| tRNA pseudouridine synthase A [Propionibacterium acnes J165] gi|289159089|gb|EFD07281.1| tRNA pseudouridine synthase A [Propionibacterium acnes J165] gi|313808787|gb|EFS47241.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA2] gi|313824843|gb|EFS62557.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL063PA1] gi|314979788|gb|EFT23882.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL072PA2] gi|315089972|gb|EFT61948.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL072PA1] gi|327325121|gb|EGE66927.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL096PA3] gi|327449322|gb|EGE95976.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL013PA2] gi|332676207|gb|AEE73023.1| tRNA pseudouridine synthase A [Propionibacterium acnes 266] Length = 279 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I L + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + I + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVL--TPDIVVTSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAF-CKHREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLTLEEVGY 249 >gi|282855153|ref|ZP_06264485.1| tRNA pseudouridine synthase A [Propionibacterium acnes J139] gi|295131337|ref|YP_003582000.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK137] gi|282581741|gb|EFB87126.1| tRNA pseudouridine synthase A [Propionibacterium acnes J139] gi|291375873|gb|ADD99727.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK137] gi|313773224|gb|EFS39190.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL074PA1] gi|313810419|gb|EFS48133.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL083PA1] gi|313812247|gb|EFS49961.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL025PA1] gi|313817968|gb|EFS55682.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL046PA2] gi|313823371|gb|EFS61085.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA2] gi|313830085|gb|EFS67799.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL007PA1] gi|313832643|gb|EFS70357.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL056PA1] gi|314924129|gb|EFS87960.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL001PA1] gi|314925807|gb|EFS89638.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA3] gi|314960817|gb|EFT04918.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA2] gi|314964970|gb|EFT09069.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL082PA2] gi|314973066|gb|EFT17162.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL053PA1] gi|314975562|gb|EFT19657.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL045PA1] gi|314982235|gb|EFT26328.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA3] gi|314984846|gb|EFT28938.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA1] gi|314986106|gb|EFT30198.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA2] gi|314988720|gb|EFT32811.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA3] gi|315079903|gb|EFT51879.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL078PA1] gi|315083346|gb|EFT55322.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL027PA2] gi|315086881|gb|EFT58857.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA3] gi|315090495|gb|EFT62471.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA4] gi|315093731|gb|EFT65707.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL060PA1] gi|315096707|gb|EFT68683.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL038PA1] gi|327325250|gb|EGE67055.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL096PA2] gi|327325550|gb|EGE67349.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL103PA1] gi|327444051|gb|EGE90705.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL043PA1] gi|327449450|gb|EGE96104.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL043PA2] gi|328756334|gb|EGF69950.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL020PA1] gi|328761333|gb|EGF74860.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL099PA1] Length = 279 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I L + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + I + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVL--TPDIVVTSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAF-CKHREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLTLEEVGY 249 >gi|260220773|emb|CBA28673.1| tRNA pseudouridine synthase A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 192 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 78/146 (53%) Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 FH R SAI R Y Y ++ ++E GR +LD +MR AA +L+G HDFT+FR+ Sbjct: 30 FHCRASAISRRYAYVLLESPIRPSVETGRVGWTFNNLDEMSMRKAADYLIGEHDFTSFRA 89 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 CQA SP++ + D + G I A +FLH IR+ +G L +G K +E+ Sbjct: 90 AQCQALSPVKNVMRIDFHKRGAYWRIEFEANAFLHHMIRNIMGCLVQIGQRKKPPEWMEE 149 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 L A+ RK P P+GLYF Y Sbjct: 150 VLAARSRKVAAPTFSPDGLYFLGPRY 175 >gi|213622844|ref|ZP_03375627.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 188 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 2/160 (1%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 I++ + V FHARFSA R Y Y I R P L KG + LD E M AAQ Sbjct: 13 IAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYY-EPLDAERMHRAAQ 71 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 L+G +DFT+FR++ CQ+ +P R + H +V G + + + A +F+H +R+ VGSL Sbjct: 72 CLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLE 131 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VG + + + L A+DR A EGLY +V+Y Sbjct: 132 VGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDYP 171 >gi|50843266|ref|YP_056493.1| tRNA pseudouridine synthase A [Propionibacterium acnes KPA171202] gi|289424889|ref|ZP_06426668.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK187] gi|62901286|sp|Q6A6S8|TRUA_PROAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50840868|gb|AAT83535.1| tRNA pseudouridine synthase A [Propionibacterium acnes KPA171202] gi|289154588|gb|EFD03274.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK187] gi|313763186|gb|EFS34550.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL013PA1] gi|313793310|gb|EFS41368.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA1] gi|313801047|gb|EFS42315.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA2] gi|313828418|gb|EFS66132.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL063PA2] gi|313838001|gb|EFS75715.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL086PA1] gi|314914385|gb|EFS78216.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA4] gi|314917708|gb|EFS81539.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA1] gi|314919564|gb|EFS83395.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA3] gi|314930155|gb|EFS93986.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL067PA1] gi|314957174|gb|EFT01278.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL027PA1] gi|314957815|gb|EFT01918.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA1] gi|314963491|gb|EFT07591.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL082PA1] gi|314969927|gb|EFT14025.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA1] gi|315077220|gb|EFT49285.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL053PA2] gi|315097933|gb|EFT69909.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL059PA2] gi|315100698|gb|EFT72674.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL046PA1] gi|315106086|gb|EFT78062.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL030PA1] gi|315109179|gb|EFT81155.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL030PA2] gi|327451475|gb|EGE98129.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA3] gi|327451552|gb|EGE98206.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL092PA1] gi|327451838|gb|EGE98492.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL083PA2] gi|328752053|gb|EGF65669.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA1] gi|328755550|gb|EGF69166.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL025PA2] Length = 279 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I L + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVL--TPDVVVKSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAF-CKHREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 KRLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLTLEEVGY 249 >gi|327332268|gb|EGE74004.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL097PA1] Length = 279 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I L + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVL--TPDVVVKSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAF-CKHREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 KRLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLTLEEVGY 249 >gi|218886490|ref|YP_002435811.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226708648|sp|B8DRQ6|TRUA_DESVM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218757444|gb|ACL08343.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 277 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 122/286 (42%), Gaps = 49/286 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + + Y G+ GWQ Q ++QG +E+ + G V +HGAGRTDSGV Sbjct: 1 MARLALTVSYVGTRLAGWQIQARTDRPQPRTVQGELERIAERIVGAPVRLHGAGRTDSGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + +A NA L D IS+ + V +FHARF A ++Y YR Sbjct: 61 HAEAQVAHMDVPDHRADLDWQRAFNAGL--PDDISVAAVVRVPDEFHARFDARGKTYTYR 118 Query: 116 -------IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC----- 163 + R AP A G+ LD + M AA +L G HDF +F++ Sbjct: 119 LWPERRWVPPRLAPFAWATGQ-------LDMDAMDAAAAYLHGMHDFASFQNTGTDIVTT 171 Query: 164 -----------QASSPIRTI---------DHFDVNSFGNLIEIRV---VARSFLHTQIRS 200 + +P++ N+ + + A FL +R+ Sbjct: 172 VRTVTRVARRHEGEAPVQPALPGAQPLAGAEETANAMAGGLRVMAWDFEADGFLKQMVRN 231 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +G L VG GK + L A+DRK AP GL V Y Sbjct: 232 MMGLLVAVGRGKLPPDAVPAILAARDRKTAPATAPAHGLTLTRVHY 277 >gi|239918171|ref|YP_002957729.1| pseudouridylate synthase I [Micrococcus luteus NCTC 2665] gi|281415639|ref|ZP_06247381.1| tRNA pseudouridine synthase A [Micrococcus luteus NCTC 2665] gi|239839378|gb|ACS31175.1| pseudouridylate synthase I [Micrococcus luteus NCTC 2665] Length = 297 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 122/263 (46%), Gaps = 20/263 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW RQ S+QG++E + + V AGRTD+GVHA QV Sbjct: 19 VRVRLDLAYDGGAFHGWARQPGLDSVQGALEDGLERILRRPVRTVVAGRTDAGVHARGQV 78 Query: 62 AHFDLVR-EWVPVI-----LCKALNAYLKISDTISILNLSIV-------DKQFHARFSAI 108 H DL EW + L A + ++ +S ++V F ARFSA+ Sbjct: 79 VHLDLAETEWAGLTRGRPGLEPATSLTRRLGGVLSGWGGAVVVHGARRAPAGFDARFSAL 138 Query: 109 RRSYLYRIITRQAPLALE---KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R Y YRI P A + +G +LD M + A ++G HDF +F A Sbjct: 139 WREYEYRID--DVPAARDPRTRGFTHWHGAALDDRLMALEADAVLGLHDFLSFCRPRAGA 196 Query: 166 SSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + H +V ++ +R+ A +F H +R+ VG+L VG+G L + Sbjct: 197 TT-IREVQHLEVRRDEDGVVRVRIRADAFCHNMVRAMVGALLQVGEGVREPGWLAHRVAR 255 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 R LAPP GL +V Y Sbjct: 256 PARDSEVRLAPPGGLTLLAVGYP 278 >gi|255533538|ref|YP_003093910.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] gi|255346522|gb|ACU05848.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] Length = 269 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 113/252 (44%), Gaps = 16/252 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG Y GWQ+Q ++QG IE A+ V V + G GRTD+ VHA + Sbjct: 1 MRYFVHIGYNGLKYNGWQKQPGVMNVQGVIENALSKVLKTPVFIIGCGRTDAHVHASQFF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ ++W L +N L I+I + +D HARF A+ RSY Y I T + Sbjct: 61 FHMDVEQDW-DFDLVFRMNKLLPAG--IAIFEVIQMDGLQHARFDAVLRSYDYFIHTYKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-------RSIHCQASSPIRTIDH 174 P +L+ K LD + M+ AA L DF F C S +D Sbjct: 118 PFLNGLSSFYLLDK-LDFDKMKQAAAILPKYKDFRAFCTSPDKYEHTLCNVMSASLAVD- 175 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 G+ + ++ + FL IR +G L +G G + + E L E A Sbjct: 176 ----ENGDKLRFQISSNRFLSKMIRIIMGQLLKIGRGVLSVDEFEHYLIYNQTPELITPA 231 Query: 235 PPEGLYFDSVEY 246 P+GLY V Y Sbjct: 232 HPQGLYLSKVTY 243 >gi|291451884|ref|ZP_06591274.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] gi|291354833|gb|EFE81735.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] Length = 287 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 118/260 (45%), Gaps = 24/260 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG------EIVVVHGAGRTDSG 54 +R + + Y+G + GW +Q G ++QG IE A+ VT E+ V AGRTDSG Sbjct: 11 VRVRLDLSYDGRDFSGWAKQAAGRRTVQGEIEDALRTVTRSGERTYELTV---AGRTDSG 67 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYL------KISDTISILNLSIVDKQFHARFSAI 108 VHA QVAH DL P + + L ++ + I ++ F ARFSA+ Sbjct: 68 VHARGQVAHVDL-----PAAVWEEHREKLLRRLAGRLPHDVRIWRVAEAPAGFDARFSAV 122 Query: 109 RRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y YR+ + L +G +LD E M A+ L+G HDF + + ++ Sbjct: 123 WRRYAYRVTDHPGGVDPLLRGHVLWHDWTLDVEAMNAASVALLGEHDFAAY-CKRREGAT 181 Query: 168 PIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 IRT+ ++ V A +F H +RS VG+L VGDG K L A Sbjct: 182 TIRTLQELSWERDRDGIVTATVRADAFCHNMVRSLVGALLFVGDGHRPVEWPGKVLAAGV 241 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R + P GL + V Y Sbjct: 242 RDSAVHVVRPHGLTLEEVGY 261 >gi|239980027|ref|ZP_04702551.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] Length = 295 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 118/260 (45%), Gaps = 24/260 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG------EIVVVHGAGRTDSG 54 +R + + Y+G + GW +Q G ++QG IE A+ VT E+ V AGRTDSG Sbjct: 19 VRVRLDLSYDGRDFSGWAKQAAGRRTVQGEIEDALRTVTRSGERTYELTV---AGRTDSG 75 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYL------KISDTISILNLSIVDKQFHARFSAI 108 VHA QVAH DL P + + L ++ + I ++ F ARFSA+ Sbjct: 76 VHARGQVAHVDL-----PAAVWEEHREKLLRRLAGRLPHDVRIWRVAEAPAGFDARFSAV 130 Query: 109 RRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y YR+ + L +G +LD E M A+ L+G HDF + + ++ Sbjct: 131 WRRYAYRVTDHPGGVDPLLRGHVLWHDWTLDVEAMNAASVALLGEHDFAAY-CKRREGAT 189 Query: 168 PIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 IRT+ ++ V A +F H +RS VG+L VGDG K L A Sbjct: 190 TIRTLQELSWERDRDGIVTATVRADAFCHNMVRSLVGALLFVGDGHRPVEWPGKVLAAGV 249 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R + P GL + V Y Sbjct: 250 RDSAVHVVRPHGLTLEEVGY 269 >gi|72163015|ref|YP_290672.1| tRNA pseudouridine synthase A [Thermobifida fusca YX] gi|71916747|gb|AAZ56649.1| tRNA pseudouridine synthase [Thermobifida fusca YX] Length = 296 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 123/264 (46%), Gaps = 31/264 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + R + I Y+G+ + GW Q ++QG ++ A+ V T ++ V AGRTD+GVH Sbjct: 24 LTRLRLDISYDGTDFSGWAEQPGRRTVQGELQAALARVLRIPTPQLTV---AGRTDAGVH 80 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYL------KISDTISILNLSIVDKQFHARFSAIRR 110 A QVAH D VP + +A L + + + ++ F ARFSA+ R Sbjct: 81 ARGQVAHVD-----VPASVWEAEGERLLRRLAGVLPPDVRVTAVAPAPPGFDARFSALFR 135 Query: 111 SYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHC---Q 164 Y+YR+ AP ++ R + + LD + M AA L+G HDF + C + Sbjct: 136 RYVYRV--SDAPGGVDPLRRHEVLWHRRPLDVDRMNEAAAALLGEHDFAAY----CRKRE 189 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +S +R + + + V A +F H +R+ VG+L VGDG+ + L+ Sbjct: 190 GASTVRELQRLEWRRESEHVYAATVQADAFCHNMVRALVGALLAVGDGRRPPEWPAQVLR 249 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 A R + PP GL + V Y Sbjct: 250 AGVRDSAVHVVPPHGLTLEEVRYP 273 >gi|313816522|gb|EFS54236.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL059PA1] Length = 279 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I L + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVL--TPDVVVKSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAF-CKHREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 KRLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLPLEEVGY 249 >gi|257066904|ref|YP_003153160.1| tRNA pseudouridine synthase A [Anaerococcus prevotii DSM 20548] gi|256798784|gb|ACV29439.1| tRNA pseudouridine synthase A [Anaerococcus prevotii DSM 20548] Length = 246 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 109/248 (43%), Gaps = 4/248 (1%) Query: 1 MIRYCMI-IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR ++ Y+G+ + G+Q QK+ S++ + AI VTGE + GRTDSGVHA Sbjct: 1 MIRNVLLETAYDGTNFAGFQYQKDERSVEEELRNAIRKVTGEDNRIVSCGRTDSGVHARS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F P + +L D I L+ V FHARFS + Y Y I Sbjct: 61 HFVNFLTASNISPKAFSFHIQPHL--PDDILALSSKEVSLDFHARFSCKSKLYKYVIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN 178 + + + I LD + + + L G HDF F R + +R ID Sbjct: 119 RLMYPVFRNYKEEISYPLDLKRLDQGLKILEGEHDFRLFMREDKKLKINTVRKIDEAYFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + I SFLH Q+R VGSL + G+ + D K + K P +G Sbjct: 179 EEGDDLAIYFKGESFLHNQVRIMVGSLIELSRGRLSLDDYRKFFDKDNNKRANPALGAQG 238 Query: 239 LYFDSVEY 246 LY VE+ Sbjct: 239 LYLRRVEF 246 >gi|14591061|ref|NP_143136.1| tRNA pseudouridine synthase A [Pyrococcus horikoshii OT3] gi|3915167|sp|O58941|TRUA_PYRHO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3257659|dbj|BAA30342.1| 262aa long hypothetical pseudouridylate synthase [Pyrococcus horikoshii OT3] Length = 262 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 28/249 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I Y+G+ + G+QRQ N +++G I KA+ + A RTD GV AL V Sbjct: 1 MKVALKIAYDGTKFHGFQRQPNVRTVEGEIIKALNNSGIMFNELKSASRTDKGVSALGNV 60 Query: 62 AHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 E + P+IL NA LK + +L+ V FH RF A RS +YR Sbjct: 61 VAITTEDERITNPMIL----NAKLK---DVWVLSAVKVPSDFHPRFWA--RSKVYRY--- 108 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +L LD E ++ ++ +G HDF+ F + + + +R+ID +V Sbjct: 109 -----------YLPSFDLDVEKVKECSKLFLGVHDFSAFSRVDGRET--VRSIDRIEVLD 155 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEG 238 G ++ I V A+SFL +R V +L+L G GK +S ++ K L+ + ++ P AP EG Sbjct: 156 LGPVLAIEVEAKSFLWEMVRRIVKTLELCGLGKLSSEEVRKMLRGKFEKSRKVPPAPAEG 215 Query: 239 LYFDSVEYS 247 L V+Y Sbjct: 216 LLLVEVKYK 224 >gi|307168411|gb|EFN61571.1| tRNA pseudouridine synthase-like 1 [Camponotus floridanus] Length = 305 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFLVTGEIVV---VHGAGRT 51 M+RY + Y G+ Y G Q+Q ++ SIQG++E A+ ++ + ++ + + RT Sbjct: 1 MVRYLLKFSYIGTQYRGLQKQIGNDFVRDTDSIQGALETALLTISPKSLIRPFIILSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYL-----KISDTISILNLSIVDKQFHARFS 106 D+GVHAL H +L ++ + + Y+ K I +L + + FHAR+ Sbjct: 61 DAGVHALCNTGHVELENKYGQIYDTSRIKQYVNRYFTKCGHNIRLLECIPITQDFHARYC 120 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIP---------KSLDCENMRIAAQHLVGRHDFTT 157 R+Y+YR + P E+ R L+ + D + + + +G DFTT Sbjct: 121 VKSRTYIYRFMI---PKVDEEHRIPLVEGIHTFHLRTYNFDIDRTKRGTKLFMGIKDFTT 177 Query: 158 F-------------RSIHC---QASSPIRTID----HFDVNSFGNLIEIRVVARSFLHTQ 197 F RS+H + + P+ D HF ++ N I ARSFL+ Q Sbjct: 178 FSAKDEGKRNIRYVRSLHSFTLEETQPLMPFDPLSKHF---TYWNFI---CSARSFLYNQ 231 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEYS 247 IR VG+L +G GK T D+ LQ P APP GL+ +VEY Sbjct: 232 IRRMVGALFALGLGKITEKDIIVMLQVPSHYNWNPHATCAPPHGLHLLNVEYD 284 >gi|313819879|gb|EFS57593.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA1] Length = 279 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I L + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + I + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRGL--TPDIVVTSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAF-CKHREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLTLEEVGY 249 >gi|242398608|ref|YP_002994032.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739] gi|259550478|sp|C6A238|TRUA_THESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|242265001|gb|ACS89683.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739] Length = 266 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 27/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHA 57 +R + I Y+G+ ++G+QRQ + +++G + K + + + GA RTD GV A Sbjct: 1 MRIALKIAYDGTKFYGFQRQPDLRTVEGELIKVLKKLGIIEDVKEANFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L V F+ + + + LN +L+ I IL + V + FH RF A + Y Y Sbjct: 61 LGNVIAFNTAKP--ELAEARILNHHLR---DIWILGKAEVPEDFHPRFWAKNKIYRY--- 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +L + +D ++ A+ +GRHDF+ F + + P+R I+ DV Sbjct: 113 -------------YLFDEGIDVIKLKACAEAFLGRHDFSNFARLE-EFRKPVREINRIDV 158 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S G +I + + +SFL R + +LKL G G + D+E L+ + K+ P APPE Sbjct: 159 FSRGRIIVVEIEGKSFLWEMTRRIITALKLCGLGVLSIGDVELMLKEKVDKKLPP-APPE 217 Query: 238 GLYFDSVEYS 247 L V Y Sbjct: 218 NLVLWEVGYE 227 >gi|124024021|ref|YP_001018328.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9303] gi|166228748|sp|A2CC53|TRUA_PROM3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123964307|gb|ABM79063.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9303] Length = 295 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y GS + GWQRQ S+Q +E+AI L + AGRTD+GVHA QV Sbjct: 17 RIGLSVQYEGSNFCGWQRQPQAVSVQQVLEEAISQLDPQRPIQAVAAGRTDAGVHAAGQV 76 Query: 62 AHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 HFD W P ALN ++ +TI + +HA SA R Y Y I Sbjct: 77 VHFDCCGPIPAERWAP-----ALNG--RLPNTIRVREAVARPASWHACHSATYRRYRYTI 129 Query: 117 ITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + P +W LD M++A + L+G D + F+ + + T+ Sbjct: 130 YNGRRPNLFLTPWSWHRYHVRLDETVMQVALEGLLGLQDLSAFQRTGSRRAHARTTVQDV 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G+LI I + A FL+ +R +G L +G+ + E+ + + R+E AP Sbjct: 190 KIERQGDLIMIEIQASGFLYGMVRLLMGQLVALGEHRLNLQTFERRWKEKRRQEVKEAAP 249 Query: 236 PEGL 239 +GL Sbjct: 250 AQGL 253 >gi|148243240|ref|YP_001228397.1| tRNA pseudouridine synthase A [Synechococcus sp. RCC307] gi|147851550|emb|CAK29044.1| tRNA pseudouridine synthase A [Synechococcus sp. RCC307] Length = 291 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 117/258 (45%), Gaps = 20/258 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-------VTGEIVVVHGAGRTDSGV 55 R + ++Y+G + GWQRQ S+Q S+++AI + ++ AGRTD+GV Sbjct: 5 RIALCLQYDGGPFCGWQRQPQHRSVQQSLDEAIEALDPLPAGIAAKLSRTIAAGRTDTGV 64 Query: 56 HALRQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HA QV HFD W P ALN ++ +I + + V +HA FSA R Sbjct: 65 HAAAQVVHFDCHGPIPAARWAP-----ALNG--RLPGSIRVRASAAVAANWHACFSATYR 117 Query: 111 SYLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y Y I + P +W L M+ Q L+G HDF+ F+ Q + Sbjct: 118 RYRYCIYNARRPNLFLSPFSWHRYQWRLQDHLMQELLQELLGHHDFSAFQRAGSQRAHAR 177 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ + G+++ + + A FL+ +R VG L G+G+ + + + Q R E Sbjct: 178 TTVQEVSLQREGDILTLEIQASGFLYGMVRLLVGQLVAAGEGRISPEQFRQRWREQRRDE 237 Query: 230 CGPLAPPEGLYFDSVEYS 247 APP+GL V Y Sbjct: 238 VKEAAPPQGLCLLRVGYP 255 >gi|300779794|ref|ZP_07089650.1| tRNA-pseudouridine synthase I [Corynebacterium genitalium ATCC 33030] gi|300533904|gb|EFK54963.1| tRNA-pseudouridine synthase I [Corynebacterium genitalium ATCC 33030] Length = 303 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 126/269 (46%), Gaps = 28/269 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-------SIQGSIEKAIFLVTGEIVVVHGAGRTDS 53 ++R + I Y+G+ + GW RQ ++QG +E A+ L+ V + AGRTD+ Sbjct: 17 IVRLRLDIAYDGTRFHGWARQAAAPGEETPVRTVQGELEDALSLILRHPVELTVAGRTDA 76 Query: 54 GVHALRQVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 GVHA QVAH D+ + + P L + L L+ + + ++ + F ARF Sbjct: 77 GVHATGQVAHADVPKHALDQRSIVGEPEKLTRRLARLLEPD--LRVTAVTEAPRDFDARF 134 Query: 106 SAIRRSYLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 SA+ R+Y YR+ T A PL AW K +D ++ A LVG +D+ F Sbjct: 135 SALTRTYRYRVTTNTAGPNPLRRTDTAAWT--KKIDLHAVQETATALVGLNDYAAFCKPR 192 Query: 163 CQASSPIRTIDHF---DVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 A++ IR I F DV++ L E + A +F +R+ V + VG G + Sbjct: 193 PHATT-IRDIHSFTWADVSTPEEPELYEATITADAFCWHMVRALVATCLDVGSGARDVSW 251 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L A +R LAP GL V+Y Sbjct: 252 AKTLLAAHERDPLVKLAPANGLTLIRVDY 280 >gi|213964809|ref|ZP_03393008.1| tRNA pseudouridine synthase A [Corynebacterium amycolatum SK46] gi|213952345|gb|EEB63728.1| tRNA pseudouridine synthase A [Corynebacterium amycolatum SK46] Length = 333 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 21/265 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSS------IQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 ++R I Y+G+ + GW Q++ + +Q ++E + V V + AGRTD+G Sbjct: 45 LVRLRFDIAYDGTDFHGWAAQRDKPTGEPVRTVQATLESTLEKVLRTPVQLTVAGRTDAG 104 Query: 55 VHALRQVAHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 VHA QVAH D+ + P L + + L +++ S F ARFS Sbjct: 105 VHASGQVAHADVPVSCLDTRSIAGDPGNLVRRVARLLPAD--VTLRGASFAPSGFDARFS 162 Query: 107 AIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHC 163 A+RR Y+YR+ + PL +S+D + M++AA L+G +DF F H Sbjct: 163 ALRRHYVYRVTSCVSGPLPTRARDTAHWRRSVDIDRMQVAADALLGLNDFAAFCRHKPHA 222 Query: 164 QASSPIRTIDHFDVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + ++ FDV++ L E V A +F + +RS VG+ VG+G+ E+ Sbjct: 223 TTTRDLQRFQWFDVSTRQEPELYEAHVTADAFCWSMVRSLVGACLSVGEGRREVGFTEQL 282 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 L + R P+A GL V+Y Sbjct: 283 LSEEKRSPLVPVAEARGLSLVGVDY 307 >gi|297242940|ref|ZP_06926878.1| tRNA pseudouridine synthase [Gardnerella vaginalis AMD] gi|296889151|gb|EFH27885.1| tRNA pseudouridine synthase [Gardnerella vaginalis AMD] Length = 301 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 36/280 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ +V E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPTLRTVQGDIEAALHMVLRVPENDPTESLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVIL-------CKALNAYLK--ISDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + + AL L+ ++ I I +S+ F ARF Sbjct: 61 VHASHQVCHLDISDETLQRCIGHTGLDGVSALEYRLRHVLAQDIVIHKVSVAPYGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALE---KGRAWLIPKSLDCENMRIAAQHLVGRHDF------- 155 SA+ R+Y+YRI + +G LD + M AA+ +VG HDF Sbjct: 121 SALERTYVYRIADGYCKAKYDPRMRGFVLRFDSELDIDAMNQAARLMVGLHDFGSFAKPN 180 Query: 156 ---TTFRSI-----HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 TT R + H S + F + +L+E +VA +F H +RS V + Sbjct: 181 PGGTTIRKVKQARWHRVGSKDAQNSTGFVLPIEQSLLEFTIVADAFAHNMVRSLVQACVQ 240 Query: 208 VGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 +G GK + E+ + R+ GP+ P GL + V Y Sbjct: 241 IGCGKRSVDWFEEKINVPLREGSTGPI-DPHGLTLEYVAY 279 >gi|313836079|gb|EFS73793.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA2] gi|314929615|gb|EFS93446.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL044PA1] gi|314970609|gb|EFT14707.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA3] Length = 279 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E+ I L G + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWAVQPDRRTVQGDLERWIPRVLRLGVPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ++ V +F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDGVDTSSMLRRLSRVLDPD--VVVKSIRSVPDEFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + +P+ LD + + A L+G DF F + + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVASVPRHLDLDRLNAAGASLLGLRDFAAF-CKYREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ L++ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGQRNQGWLDEVAASASRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLTLEEVGY 249 >gi|183981112|ref|YP_001849403.1| pseudouridine synthase a, TruA [Mycobacterium marinum M] gi|183174438|gb|ACC39548.1| pseudouridine synthase a, TruA [Mycobacterium marinum M] Length = 237 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 22/219 (10%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVP--------------VILCKALNAYLKISDTIS 90 + AGRTD+GVHA QVAH D+ + +P + L + L +L + Sbjct: 3 LRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPAD--LR 60 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQ 147 +L+++ F ARFSA+RR Y+YR+ T AP +E +A + P+ LD + M +A++ Sbjct: 61 VLDIARAPTAFDARFSALRRHYVYRLST--APYGVEPQQARYVTVWPRELDIDAMTVASR 118 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 L+G H+F F + ++ IR + D + G+L+ +V A +F + +RS VG+L Sbjct: 119 ELLGLHNFAAF-CRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLA 177 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+ + T + L A R AP GL V+Y Sbjct: 178 VGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDY 216 >gi|149278992|ref|ZP_01885126.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] gi|149230271|gb|EDM35656.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] Length = 267 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 117/255 (45%), Gaps = 22/255 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y+G Y GWQ+Q ++QG +EK + V V + G GRTD+ VHA + Sbjct: 1 MRYFVHIGYHGLHYNGWQKQPGVLNVQGVLEKTLSQVLKRPVEIIGCGRTDAHVHASQFF 60 Query: 62 AHFDLVREW---VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H D+ W + L K+L + + D I + L HARF A++RSY Y + T Sbjct: 61 FHMDIEEAWDFDLIFRLNKSLPTNIAVFDVIPMPGLQ------HARFDAVQRSYDYFLHT 114 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-------RSIHCQASSPIRT 171 + P L+ ++ + K L + M+ AA L DF F C S T Sbjct: 115 YKNPF-LQGLSSYYLLKDLKFDEMKAAAAILPKYKDFRPFCTSPDKYEHTICNVMSASLT 173 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 +D G+ + ++ + FL IR +G L VG G + + E+ L + E Sbjct: 174 VD-----PNGDRMRFQISSNRFLSKMIRIIMGQLLKVGRGVLSVDEFEQYLIDKRTPELI 228 Query: 232 PLAPPEGLYFDSVEY 246 A P+GLY V Y Sbjct: 229 TPAHPQGLYLSKVTY 243 >gi|148683104|gb|EDL15051.1| mCG23338, isoform CRA_b [Mus musculus] Length = 284 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 28/225 (12%) Query: 48 AGRTDSGVHALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 + RTD+GVHAL AH D+ R + P ++ KALN +LK I +L V FH Sbjct: 27 SSRTDAGVHALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLK-HPAIRVLKAFRVPNDFH 85 Query: 103 ARFSAIRRSYLYRIIT-----RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFT 156 AR +A R+Y YR+ T Q P+ E+ W L + LD M+ AAQHL+G HDF+ Sbjct: 86 ARHAATSRTYQYRLATGCSWPNQLPV-FEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFS 144 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVG 203 F+S ++ +RT+ V+ + ++SFL+ Q+R Sbjct: 145 AFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTA 204 Query: 204 SLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 L VG G T ++ L++QD K +AP GL+ SV Y Sbjct: 205 VLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLFLKSVLY 249 >gi|269124177|ref|YP_003306754.1| tRNA pseudouridine synthase A [Streptobacillus moniliformis DSM 12112] gi|268315503|gb|ACZ01877.1| tRNA pseudouridine synthase A [Streptobacillus moniliformis DSM 12112] Length = 244 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 121/238 (50%), Gaps = 5/238 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I +Y+GS ++G QRQK+ ++QG+IE + E V + +GRTD GVHA QV++F Sbjct: 6 IIYQYDGSAFYGSQRQKDKVTVQGTIEDILINSFNEKVNMISSGRTDRGVHAKMQVSNFI 65 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ++ I+ + Y + I IL++ VD ++++RF + R+Y + + R+ Sbjct: 66 INKDIKLDIIKSKIEKYSNYA--IKILSIEKVDIKYNSRFDCMERTYEFILSNRENITPF 123 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTI-DHFDVNSFGNL 183 + I +D E + + +G+H+F+ F +A+ +PIR I + + + N Sbjct: 124 NRKYITSINYEIDVEKLNDILKQFIGKHNFSNFSKKENKANKNPIREIYECYSIKKDKN- 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + SFL + +R +G+ + GK + +++A + + GLY Sbjct: 183 IHIYIKGNSFLKSMVRIIIGTTLAIYSGKISKHFIKEAFDNPNPNTKKYILDGNGLYL 240 >gi|302851591|ref|XP_002957319.1| tRNA pseudouridine synthase [Volvox carteri f. nagariensis] gi|300257414|gb|EFJ41663.1| tRNA pseudouridine synthase [Volvox carteri f. nagariensis] Length = 226 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 105/226 (46%), Gaps = 6/226 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHAL 58 + Y MI+ Y+G+ Y GWQ Q + ++Q +E A+ V E ++ V AGRTD+GVHA Sbjct: 3 LSYRMIVSYDGTAYCGWQLQPSAPTVQRFLEGALCTVLREERAVLGVRAAGRTDAGVHAR 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F +E + LN+ L I +L +S F SA+ + Y Y I Sbjct: 63 GQVVQFSCDKELDVTKMPYKLNSVL--PHDIRVLRMSRTAPDFSVTCSALGKCYRYSITN 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L A + + LD MR AA L G HDF+ F +I + SP N Sbjct: 121 GETHDPLRHRYALHVRRHLDLAAMRSAAALLTGTHDFSQFSNIGEEGGSPDVQRRRRQRN 180 Query: 179 SFGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 L + VV FL+ +R G L VG+GK + + + L+ Sbjct: 181 PVKTLRRVDVVEGNGFLYKMVRHISGVLVAVGEGKLQTKAVGRMLE 226 >gi|145356339|ref|XP_001422390.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582632|gb|ABP00707.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 286 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 124/266 (46%), Gaps = 30/266 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 + Y + I Y+G Y G+Q Q ++ +IQ +E+A+ +TG E + + AGRTD+GVHA Sbjct: 16 VTYALKISYDGERYNGFQYQGEDVPTIQRELERALAKLTGIDRERLRLGAAGRTDAGVHA 75 Query: 58 LRQVAHF--------DLVREWVPVILC-KALNAYLKISDTISILNLSIVDKQFHARFSAI 108 QVAHF DL R C KA+N L I + FH+RF A Sbjct: 76 RGQVAHFYCEKSLGEDLTR-------CQKAMNGML--PKDIRVDAFWEPHPLFHSRFHAS 126 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTF----RSIHC 163 ++Y Y + R + A + + D E +R AAQ VG D+ F R Sbjct: 127 GKTYHYYVDARATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFCNTSRDKSN 186 Query: 164 QASSPIRTIDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + + RTI FDV + LI + V FL+ Q+R+ VG+L +V GK L Sbjct: 187 EDRNTTRTIRRFDVFEDAADDGLIRLEVEGDGFLYRQVRNMVGALLVVASGKHDLAYLRT 246 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ +DR AP GL+ V Y Sbjct: 247 LIETKDRSRAPMGAPARGLFLHEVFY 272 >gi|57640862|ref|YP_183340.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1] gi|62901178|sp|Q5JI92|TRUA_PYRKO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57159186|dbj|BAD85116.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1] Length = 267 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 118/250 (47%), Gaps = 26/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHA 57 ++ + + Y+GS ++G+QRQ +++G I K + + + E GA RTD GV A Sbjct: 1 MKLALRVAYDGSAFYGFQRQPGVRTVEGEIIKVLQKLGIIESPEKNDFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V F + E + + LN +L SD + +L ++ V FH RF A ++Y Y Sbjct: 61 FFNVVSF-VPSERPDLARPEVLNHHL--SD-VWVLGIAEVPDDFHPRFWAKFKTYRY--- 113 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +L+ + D MR A VGRHDF+ F + PIR ++ +V Sbjct: 114 -------------YLVNEGFDLSAMRECASLFVGRHDFSAFAKLE-PGRDPIREVERVEV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I V +SFL +R V +L+ G G + ++E+ L + K+ P APPE Sbjct: 160 IERQGYLVIEVQGKSFLWEMVRRIVNALRFCGLGLLEAEEVERMLSGEYGKKIPP-APPE 218 Query: 238 GLYFDSVEYS 247 GL +EY Sbjct: 219 GLVLWHIEYP 228 >gi|229818212|ref|ZP_04448494.1| hypothetical protein BIFANG_03510 [Bifidobacterium angulatum DSM 20098] gi|229784463|gb|EEP20577.1| hypothetical protein BIFANG_03510 [Bifidobacterium angulatum DSM 20098] Length = 302 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 129/286 (45%), Gaps = 43/286 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G G++GW Q + ++QG IE+A+ + E + + AGRTD+G Sbjct: 1 MRLRIDLAYDGGGFYGWAVQPDIRTVQGEIEQALHRILRVDPNDASEPLRLVVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREW---------VPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 VHA QV H D+ + VP + + D I+I +S F ARF Sbjct: 61 VHASHQVCHIDMSPDILERAVGHMKVPAVTALEHRLQRVLPDDITIHRISEAPVGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y+YRI R + + +G I LD E M +AA +G HDF +F + + Sbjct: 121 SALERTYVYRIADRSSEVDPRLRGCVLHIDGDLDIEAMNLAAAQTIGLHDFGSFATPNPG 180 Query: 165 ASSPIRTIDHFD--------------------VNSF-GNLIEIRVVARSFLHTQIRSFVG 203 ++ IR + D V +F L+ +VA +F +RS V Sbjct: 181 GTT-IREVKQADWARVPAQPLIAQPMAGKGYVVPTFESGLVCFTIVADAFARNMVRSLVN 239 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKE--CGPLAPPEGLYFDSVEYS 247 VG K D K A ++E GP+A P+GL + V Y Sbjct: 240 GCVQVGLDK-RDLDWFKGKMAVPKREGSTGPIA-PQGLTLEHVAYP 283 >gi|163840856|ref|YP_001625261.1| tRNA pseudouridine synthase A [Renibacterium salmoninarum ATCC 33209] gi|162954332|gb|ABY23847.1| tRNA pseudouridine synthase A [Renibacterium salmoninarum ATCC 33209] Length = 297 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 19/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW Q ++QG +E ++ ++ +V V AGRTD+GVHA QV Sbjct: 17 LRLRLDLAYDGAPFSGWALQPERLTVQGVLEDSLAMILRRLVRVTVAGRTDAGVHARGQV 76 Query: 62 AHFDL-VREWVPV-----------ILCKALNAYLKI----SDTISILNLSIVDKQFHARF 105 H + EW + +L + A ++ + + + ++ + F ARF Sbjct: 77 VHAEFYPHEWEQIARRSTASPEEAVLRRLRGALSRVLGEQTGAVVVHSVRPAEPGFDARF 136 Query: 106 SAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R Y Y I R A +++ W LD E + +A Q L+G DF F Sbjct: 137 SALWRRYSYHIADRPAQWDPVQRQMTWWHKTELDVELLNLAVQPLLGLQDFRAFCKPRPG 196 Query: 165 ASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 A++ +R + + + + I++ V A +F H +R+ +GS VG G+ + L + L Sbjct: 197 ATT-VRELQRLEFSRQPDGTIKVAVQADAFCHNMVRALIGSAVQVGSGEQSPDWLAERLA 255 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 + R LAPP L + V Y Sbjct: 256 IKVRDAKSGLAPPHPLVLEEVHYP 279 >gi|315104023|gb|EFT75999.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA2] Length = 279 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 119/252 (47%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I L + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + I + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVL--TPDIVVTSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + + LD + + A L+G DF F H + ++ IR + Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAF-CKHREGATTIRPLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLTLEEVGY 249 >gi|297571891|ref|YP_003697665.1| tRNA pseudouridine synthase A [Arcanobacterium haemolyticum DSM 20595] gi|296932238|gb|ADH93046.1| tRNA pseudouridine synthase A [Arcanobacterium haemolyticum DSM 20595] Length = 293 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 126/272 (46%), Gaps = 32/272 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW Q ++Q +EKA+ +V E VV+ AGRTD+GVHA QV Sbjct: 9 LRVRLDLGYDGNHFHGWAAQPGLRTVQDELEKALSVVFREPVVLTVAGRTDAGVHARHQV 68 Query: 62 AHFDLVRE-WVPVI----------LCKALNAYLKIS------------DTISILNLSIVD 98 AH D+ R W + L LN+ L S + + + V Sbjct: 69 AHCDVSRAAWDALPGRSSRTPGESLVLRLNSLLARSAGGVVAGAPRGYSDVVVHSALEVP 128 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 F ARFSA+ R+Y YRI A ++ + LD + M A+ L+G HDF ++ Sbjct: 129 ADFDARFSALWRAYTYRIADSVAEWDPQRHDVLWLSDRLDLDAMNRASVALLGEHDFLSY 188 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG----KWT 214 + +S IRT+ ++ R A +F H+Q+R+ +G+L VG G +W Sbjct: 189 CKPR-EGASTIRTLLDLGFERVEGIVVGRAKADAFCHSQVRTLMGTLIEVGRGAREERWP 247 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LE+ R +APP L + + Y Sbjct: 248 LLRLEEC----SRDGQVVVAPPHPLTLEEIGY 275 >gi|195490008|ref|XP_002092963.1| GE26463, isoform B [Drosophila yakuba] gi|194179064|gb|EDW92675.1| GE26463, isoform B [Drosophila yakuba] Length = 306 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 130/303 (42%), Gaps = 59/303 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F EI V + R Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVFHPINEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL DL R + L LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQGLPIRVLSSKLVSNSFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALE------KGRAWLIP------------KSLDCENMRIAAQ 147 AI R+YLYR + P +LE K IP S D ++ AA+ Sbjct: 120 HAIGRTYLYRFAVAKDP-SLEDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVQAAAR 178 Query: 148 HLVGRHDFTTFRSIHCQASS------PIRTIDHFDVN---------------SFGNLIEI 186 +G HDF TF S+ Q S +R ID ++ N +I Sbjct: 179 MFIGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDI 238 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDS 243 + A+SFL+ Q+R VG+L +G+G+ L + L + P LAP GLY Sbjct: 239 EIKAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDPRILLAPACGLYLCK 298 Query: 244 VEY 246 V Y Sbjct: 299 VHY 301 >gi|254756839|ref|ZP_05208867.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] Length = 185 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 9/176 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ L GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD + EW ALN L D I I + ++FHAR+ R+ Y YR+ Sbjct: 66 QVIHFDTPLSLEEWQ---WSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRV 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + + + + P L+ ++R A + +G HDFT+F S +RTI Sbjct: 121 LVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTI 176 >gi|195436012|ref|XP_002065972.1| GK25867, isoform A [Drosophila willistoni] gi|194162057|gb|EDW76958.1| GK25867, isoform A [Drosophila willistoni] Length = 508 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 121/266 (45%), Gaps = 55/266 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLDQPRLDTNSVQGCLELALRVFRPTNEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVR----EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTIHVDLERYDGQPYALTTLTGVLNRTLGKQRLPIRVLSTELVPDTFHCRY 119 Query: 106 SAIRRSYLYRI-ITRQAPL----ALEKGRAWLIP------------KSLDCENMRIAAQH 148 AI R+YLYR + R +P+ +G IP S D E +R AA+ Sbjct: 120 HAIGRTYLYRFAVARNSPVDDGKLKNRGYEAFIPVEELDRCYFLQAASFDIERVRSAARL 179 Query: 149 LVGRHDFTTFRSIHCQASSP-------IRTIDHFDV--------NSFGNLI-------EI 186 +G HDF TF S+ Q +R ID ++ N+ L EI Sbjct: 180 FLGIHDFRTFMSVSRQKGPSRDHPMFTVRKIDEINIRPGHSLALNAHAKLANETYDHWEI 239 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGK 212 + A+SFL+ Q+R VG+L +G GK Sbjct: 240 EIKAKSFLYKQVRRIVGTLLALGTGK 265 >gi|119356907|ref|YP_911551.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides DSM 266] gi|166228693|sp|A1BFF0|TRUA_CHLPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119354256|gb|ABL65127.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides DSM 266] Length = 258 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 11/245 (4%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G+GY GWQRQ ++QG IE+ + + E + + GAGRTD GVHA Q+A F Sbjct: 14 ITIEYDGTGYAGWQRQAGSFCTVQGEIERILSQILQEDIRLAGAGRTDKGVHARAQIATF 73 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 P + ++NA L +TI I + +V + FHAR SA R Y Y R+ P A Sbjct: 74 KSRSSLGPDRMVHSMNALLP--NTIRISDPLVVPEGFHARHSAKEREYRY--FVREEPSA 129 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTID--HFDVNSFG 181 + + SLD +M A +++G HDF+ F + + R I F F Sbjct: 130 VLGRFSGCSYGSLDLMSMNRVASYVLGEHDFSVFSKETRDRTGCLCRVISCKWFRQREF- 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +R+ A FL + +R + G G + + + +++ A P GL+ Sbjct: 189 --FVLRISANRFLRSMVRYLAALMIDSGKGLLSPEEAREMIESGILTRQLVPAAPNGLFL 246 Query: 242 DSVEY 246 + Y Sbjct: 247 WKITY 251 >gi|283782782|ref|YP_003373536.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 409-05] gi|283442111|gb|ADB14577.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 409-05] Length = 305 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 130/287 (45%), Gaps = 46/287 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ V + E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPTLRTVQGEIEGALHTVLRVPEGDSAEPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK---------ALNAYLK--ISDTISILNLSIVDKQFHA 103 VHA QV H D+ E + + C AL LK + IS+ +S+ F A Sbjct: 61 VHASHQVCHLDVCEETL--LRCVGHTGLDGVCALEYRLKHVLPQDISLHKVSVAPIGFDA 118 Query: 104 RFSAIRRSYLYRIITRQAPLALE---KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 RFSA+ R+Y+YRI + +G + LD + M AA+ ++G HDF +F Sbjct: 119 RFSALERTYVYRICDASDYCDYDPRMRGFVLKLDDVLDVDAMNQAARLMIGLHDFGSFAR 178 Query: 161 IHCQASSPIRTIDHFDVNSFGN--------------------LIEIRVVARSFLHTQIRS 200 + + IR + G L+E +VA +F H +RS Sbjct: 179 PN-PGGTTIRDVKSACWERVGTRANDVRVKLKTGCVPPVEQGLLEFTIVADAFAHNMVRS 237 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 V + +G GK T + + R+ GP+A P+GL + V Y Sbjct: 238 LVQACVQIGCGKRTLDWFVEKINTPLREGSTGPIA-PQGLTLEYVAY 283 >gi|110598437|ref|ZP_01386709.1| tRNA pseudouridine synthase A [Chlorobium ferrooxidans DSM 13031] gi|110339971|gb|EAT58474.1| tRNA pseudouridine synthase A [Chlorobium ferrooxidans DSM 13031] Length = 244 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 8/244 (3%) Query: 6 MIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + +EY+G+ Y GWQRQ K ++QG IE A+ ++ E + + AGRTD GVHA Q+A+ Sbjct: 6 ITVEYDGTPYSGWQRQNRKGCVTVQGEIESALGMILQEKISLAAAGRTDKGVHAKAQIAN 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + +LNA L DTI I + + K+FH+R SA R Y Y +I P Sbjct: 66 FSTASPMDLSRMVHSLNALLP--DTIRITDPLEMPKEFHSRHSARERHYRYFLIAE--PS 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + D M+ A + G HDF+ F + + T+ + + Sbjct: 122 AIYGRFSGCSFGTPDLAVMQQVAGSVRGVHDFSAFSREDRDSPGRLCTVTACQWYRYQHF 181 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLYFD 242 + + + A FL + +R V + G G ++ + ++ L+ + P+A P GL+ Sbjct: 182 LVLSISANRFLRSMVRYLVDGMLRAGKGTLSAEEFKRMLETGVMTTQLNPVA-PSGLFLW 240 Query: 243 SVEY 246 V Y Sbjct: 241 RVTY 244 >gi|167583949|ref|ZP_02376337.1| tRNA pseudouridine synthase A [Burkholderia ubonensis Bu] Length = 193 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 2/168 (1%) Query: 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDC 139 NA+L T+++ + FHARFSA R+Y Y + + RA I LD Sbjct: 2 NAFLP--PTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPVRSPMLDARAGWIHTPLDD 59 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G+ + R A +FLH +R Sbjct: 60 DAMRAAAAHLIGEHDFSAFRSSECQSKTPVKHLYQIDIRRAGHFLHFRFRANAFLHHMVR 119 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +G L VG G++ + + L +DR P +GLY V Y Sbjct: 120 NLMGCLVAVGRGRYPAEWIADVLAGRDRNRAAPTFMADGLYLAHVGYP 167 >gi|294660547|ref|NP_853358.2| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(low)] gi|298286877|sp|Q7NAQ9|TRUA_MYCGA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|284812210|gb|AAP56926.2| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(low)] gi|284930851|gb|ADC30790.1| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(high)] Length = 263 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ Q + ++Q ++ A+ + + V+ +GRTD GVHA+ Q F + Sbjct: 29 ISYHGTKFHGYAVQNDYETVQSKLQDALAWIYESKIYVNASGRTDKGVHAINQYISFYID 88 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L + LN Y + + I + VD+ FHARFSA ++YLY +I A L Sbjct: 89 DRISLEKLREILNRYGQ--NKWYIKWIKEVDRNFHARFSAKAKTYLY-LIDYCANNPLFY 145 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 AW++ LD + A L G H+F +F + +RTI D+ N + I Sbjct: 146 DHAWIVNFQLDFNLIEKAIPILEGTHNFWSFST--ADKDKGLRTIHKIDLKQEDNKVYIY 203 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + FL + +R VG+L +G K+ L+ L + AP GLY V Y Sbjct: 204 ITGDGFLRSMVRMIVGALYNIGIKKYDLNHLKWLLDNPKKGRAITKAPASGLYLYEVYYE 263 >gi|332862130|ref|XP_513709.3| PREDICTED: pseudouridylate synthase-like 1 [Pan troglodytes] Length = 261 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 98/190 (51%), Gaps = 15/190 (7%) Query: 3 RYCMIIEYNGSGYFGW---QRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + + +Q +E+A L + E V + RTD+GVHAL Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR++A R+YL Sbjct: 73 SNAAHLDVQRRSGRPPFPPEVLAEALNTHLR-HPAIRVLRAFRVPSDFHARYAATSRTYL 131 Query: 114 YRIIT----RQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T R E+ W +P LD M+ AAQHL+G HDF+ F+S SP Sbjct: 132 YRLATGCHRRDELPVFERNLCWTLPADCLDVVAMQEAAQHLLGTHDFSAFQSAGSPVPSP 191 Query: 169 IRTIDHFDVN 178 +RT+ V+ Sbjct: 192 VRTLRRVSVS 201 >gi|328906179|gb|EGG25954.1| tRNA pseudouridine synthase A [Propionibacterium sp. P08] Length = 279 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 9/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E+ I L + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWAVQPDRRTVQGDLERWIPRVLRLSVPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ++ V +F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDGVDTSSMLRRLSRVLDPD--VVVKSIRSVPDEFDARFSALWRRYVYRLWD 118 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + + +P+ LD + + A L+G DF F + + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVASVPRHLDLDRLNAAGASLLGLRDFAAF-CKYREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ L++ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGQRNQGWLDEVAASASRASSVLVM 237 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 238 PACGLTLEEVGY 249 >gi|149916968|ref|ZP_01905469.1| tRNA pseudouridine synthase A [Plesiocystis pacifica SIR-1] gi|149822246|gb|EDM81637.1| tRNA pseudouridine synthase A [Plesiocystis pacifica SIR-1] Length = 285 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 120/266 (45%), Gaps = 32/266 (12%) Query: 8 IEYNGSGYFGWQRQKNGS----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + Y+G+ + G+ RQ NG +IQG +E+A+ + + + GA RTD+GVHA Q+ Sbjct: 7 VAYDGTDFHGFARQDNGGQPLRTIQGCLEQALSTLYKQPIRTRGASRTDAGVHARGQLVA 66 Query: 64 FDLVREWVPVILCKALNAYLKISDTISI---LNLSIVDKQFHARFSAIRRSYLYRI--IT 118 FD +P A +D I+ L + + + RF + Y YR+ ++ Sbjct: 67 FDPPFA-IPARGLLLGLAANLPADIIASAAWLAEDVEGEPLNPRFHTRGKLYRYRLRPVS 125 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + PL+ W +P+ +D M+ AA G HDF FR+ CQA S R + VN Sbjct: 126 LRDPLSARY--EWHLPRPIDVAAMQAAAPRFAGTHDFAGFRASDCQAKSTTRRVRSVIVN 183 Query: 179 --SFGNL------------------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + L + I V +FL +R VG+L VG G++ + + Sbjct: 184 VETLAELDPLAGQRGRIEGPAAPARVTIDVRGDAFLKNMVRIMVGTLVGVGRGQFGAERI 243 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSV 244 ++ L + DR G AP GL V Sbjct: 244 DEVLASGDRTRAGVTAPACGLTLVEV 269 >gi|254424035|ref|ZP_05037753.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7335] gi|196191524|gb|EDX86488.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7335] Length = 299 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 10/250 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQKN ++Q IE I V G + GAGRTD+GVHA QV Sbjct: 28 RVALVIQYKGTHFHGWQRQKNAKRTVQAEIESVIASVLGRKPALVGAGRTDAGVHAAAQV 87 Query: 62 AHFDLVREWVPVILCKALNAYL---KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHF P+++ A + ++ D I + + V +HA+FSA R Y Y T Sbjct: 88 AHFA-----APIVIPAERWAIILNDRLGDDIVVRASTRVASDWHAQFSANWRRYRYTFYT 142 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAA-QHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P + W + EN+ +AA Q ++G H+ F + + Sbjct: 143 SKYPNLFVQPYVWHYYRQRLDENLMLAALQPMMGYHNLLAFHRTGSDRTHSWVELQDVQC 202 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + I + A+ FL+ +R +G + VG+ + + + Q + R APP+ Sbjct: 203 TRSGDFVRIELQAKGFLYGMVRLIMGLIVQVGERRLSPKEFTAIWQKRRRDLVKYSAPPQ 262 Query: 238 GLYFDSVEYS 247 GL V YS Sbjct: 263 GLCLLRVGYS 272 >gi|284931225|gb|ADC31163.1| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. F] Length = 263 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ Q + ++Q ++ A+ + + V+ +GRTD GVHA+ Q F + Sbjct: 29 ISYHGTKFHGYAVQNDYETVQSKLQDALAWIYESKIYVNASGRTDKGVHAINQYISFYID 88 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L + LN Y + + I + VD+ FHARFSA ++YLY +I A L Sbjct: 89 DRISLEKLREILNRYGQ--NKWYIKWIKEVDRNFHARFSAKAKTYLY-LIDYCANNPLFY 145 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 AW++ LD + A L G H+F +F + +RTI+ ++ N + I Sbjct: 146 DHAWIVNFQLDFNLIEKAIPILEGTHNFWSFST--ADKDKGLRTINKINLKQEDNKVYIY 203 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + FL + +R VG+L +G K+ L+ L + AP GLY V Y Sbjct: 204 ITGDGFLRSMVRMIVGALYNIGIKKYDLNHLKWLLDNPKKGRAITKAPASGLYLYEVYYE 263 >gi|194746922|ref|XP_001955903.1| GF24924 [Drosophila ananassae] gi|190623185|gb|EDV38709.1| GF24924 [Drosophila ananassae] Length = 307 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 129/305 (42%), Gaps = 61/305 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--------SIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N S +IQG +E A +F T +I V + R Sbjct: 1 MHRYLLNISYIGTSFRGIQKTVNKSEQPRLDTNTIQGCLELALRVFRPTNDIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVR----EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L K I IL+ +V FH R+ Sbjct: 60 TDAGVHALHSTVHVDLQRYDGQPYDTGTLTGVLNRTLDKQRLPIRILSSQVVSDSFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALE------KGRAWLIP------------KSLDCENMRIAAQ 147 A R+YLYR + A+E KG IP S D E +R AA+ Sbjct: 120 HATGRTYLYRFAVSRNTGAVESGNLRNKGYESFIPVEELDRCYFLQSTSFDIERVRNAAR 179 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI----------------------- 184 +G HDF TF S+ Q SP R F + ++ Sbjct: 180 MFIGVHDFRTFMSVSRQ-KSPSRDHPRFTLRKIDDISIRPGRALAVAGNAALAANSYDYW 238 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYF 241 EI + A+SFL+ Q+R VG+L +G G+ + + L + LAP GLY Sbjct: 239 EIEIRAKSFLYKQVRRIVGTLLALGCGRIDEKSVYQMLTIPSKNSWDHRVLLAPACGLYL 298 Query: 242 DSVEY 246 V Y Sbjct: 299 CRVHY 303 >gi|300782641|ref|YP_003762932.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei U32] gi|299792155|gb|ADJ42530.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei U32] Length = 238 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 104/218 (47%), Gaps = 26/218 (11%) Query: 48 AGRTDSGVHALRQVAHFDLV-------------REWVPVILCKALNAYLKISDTISILNL 94 AGRTD+GVHA QV H D+V E +P + A + + +L Sbjct: 8 AGRTDAGVHATGQVVHVDVVPLAPGSAGRVPVFAEGIPDLTRMAGRWNRLLPGDVRVLGA 67 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR-----AWLIPKSLDCENMRIAAQHL 149 I + F ARFSA+RR Y YR+ AP ++ R AW P S D M AA L Sbjct: 68 RIAPEGFDARFSAVRRHYRYRV--SDAPWGVDPLRRHDTLAWNRPLSTDA--MNAAAAEL 123 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLV 208 +G HDF + + + IR + + +L+E+RV A +F H+ +RS VG L LV Sbjct: 124 LGLHDFAAY-CKQRETGTTIRELQRLEWTRVDEHLLEVRVSADAFCHSMVRSLVGVLLLV 182 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GDG+ T K L++ R +AP GL V+Y Sbjct: 183 GDGRRTDAWPAKVLESGIRDSA--VAPAHGLTLLGVDY 218 >gi|297625831|ref|YP_003687594.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921596|emb|CBL56150.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 292 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 9/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+G+ + GW Q +++G + + + G + V + AGRTD+GVHA Q Sbjct: 5 RFRLDLSYDGTHFHGWAMQPGQRTVEGELATWLTRIAGTAQPVRLVVAGRTDAGVHARGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL L + L + I + L++ F ARF+AI R Y+YR+ Sbjct: 65 VAHADLPATMDAAELKRRL--LRALPPDIVVRRLTVAPPGFDARFAAIWRRYVYRLWDLS 122 Query: 121 A-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P L +G LD E M A L+G DF F + ++ IRT+ + Sbjct: 123 SHPDPLLRGMVTTKSLDLDPELMTAAGSRLLGLRDFAPF-CRRREGATTIRTLLQCEARR 181 Query: 180 FGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + IE+ V A +F H+ +RS G+L VG G + L++ R + P Sbjct: 182 VADGCGTIELTVRADAFCHSMVRSLTGALVAVGSGTQSMDWLDEVAAGPTRAGSVTVMPA 241 Query: 237 EGLYFDSVEYS 247 GL + V Y+ Sbjct: 242 RGLCLEQVAYA 252 >gi|224418450|ref|ZP_03656456.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|253827766|ref|ZP_04870651.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|313141982|ref|ZP_07804175.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|253511172|gb|EES89831.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|313131013|gb|EFR48630.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] Length = 240 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 121/262 (46%), Gaps = 38/262 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI+ M I Y G +FG+QRQK+ +I G +E+ +F G V G+GRTD GVHA Q Sbjct: 1 MIKVAMRIAYYGGEFFGFQRQKDKITICGVLEE-VFRSVGIFDVCMGSGRTDKGVHASAQ 59 Query: 61 VA-------HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H DL R L + LN +K+ I I + V+ +FH RFS RR Y Sbjct: 60 VISVSIPEFHRDLQR------LKQLLN--VKLYPWIKIKQIWQVENEFHVRFSVKRRGYC 111 Query: 114 YRIITRQAP-LAL-----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR---SIHCQ 164 Y + + +P LAL +L+ +SLD G +DF+ F C+ Sbjct: 112 YVLSQKYSPFLALFSHFYPLKNPFLVQESLDI---------FRGVYDFSAFMKNGGSGCE 162 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 S +R I H + G I FL +QIR VG L + G DL+K L Sbjct: 163 GS--VREIFHTKLLKRGEFYLISFWGNGFLRSQIRLMVGFLLEIDRGNLGIEDLKKQLLG 220 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 + K APP GL+ V+Y Sbjct: 221 E--KIFSIPAPPNGLFLSRVDY 240 >gi|222834648|gb|EEE73111.1| predicted protein [Populus trichocarpa] Length = 225 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 24/204 (11%) Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + P + N +L I++ V FH+R A R Y Y ++ Sbjct: 2 QVVHFDTPLDRAPFSWVRGTNTFLP--PDIAVQWAQPVPDAFHSRACATARRYAYVLLQS 59 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++E GR + +LD + M+ AAQHL+G HDF++FR+ CQA SP++T+ + Sbjct: 60 PVRPSVEAGRVGWVFHALDGDAMQAAAQHLLGEHDFSSFRASGCQAKSPVKTLHRLSITR 119 Query: 180 --FGNLIEIRVVA--------------------RSFLHTQIRSFVGSLKLVGDGKWTSTD 217 G+ ++ + +FLH +R+ +G L +G G + Sbjct: 120 RMAGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGAYAPQW 179 Query: 218 LEKALQAQDRKECGPLAPPEGLYF 241 +++ L A+ R P P+GLYF Sbjct: 180 MQQVLDARSRDAAAPTFSPDGLYF 203 >gi|119025367|ref|YP_909212.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis ATCC 15703] gi|118764951|dbj|BAF39130.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis ATCC 15703] Length = 306 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 52/291 (17%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G+G++GW +Q ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHFDLVREW---------VPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 VHA QV H D+ + VP ++ + I+I ++ F ARF Sbjct: 65 VHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPDGFDARF 124 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWL--IPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 SA+ R+Y+YRI R + + + R ++ I LD ++M AA +G HDF +F + + Sbjct: 125 SALERTYVYRIADRSSEVD-PRTRNFVLHIDDELDLKSMNEAAAMTIGLHDFGSFATPNP 183 Query: 164 QASS------------PIRT-IDHFDVNSFGN----------LIEIRVVARSFLHTQIRS 200 ++ P RT ID D + G L+ +VA +F +RS Sbjct: 184 GGTTIREVKTAYWRRVPQRTLID--DGMTMGERYRTPTVESGLVCFVIVADAFARNMVRS 241 Query: 201 FVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V VG GK W + + L+ GP+A P+GL + +EY Sbjct: 242 LVNGCVQVGIGKRSLDWFAGKMAAPLR---EGSTGPIA-PQGLTLEHIEYP 288 >gi|260797314|ref|XP_002593648.1| hypothetical protein BRAFLDRAFT_252211 [Branchiostoma floridae] gi|229278875|gb|EEN49659.1| hypothetical protein BRAFLDRAFT_252211 [Branchiostoma floridae] Length = 259 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 119/248 (47%), Gaps = 38/248 (15%) Query: 37 LVTGEIVVVHGAGRTDSGVHALRQVAHFDLV-----REWVPVILCKALN-AYLKISDT-I 89 L E +H + RTDSGVHAL AH DL+ + P + A+N + L + T I Sbjct: 8 LKLAEPPNIHVSSRTDSGVHALCNTAHADLIYGDDKEPFDPDSIVHAVNRSILHMGRTDI 67 Query: 90 SILNLSIVDKQFHARFSAIRRSYLYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIA 145 ++N V F +R A+ R+YLYR+++ + P+ E R+W I + LD E M+ A Sbjct: 68 RLMNCRPVSPTFSSRHQALGRTYLYRVVSGCYHSRLPIP-EVNRSWGIKERLDIEAMQEA 126 Query: 146 AQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHFDVNSFG-------------NLIEIRVVA 190 A+H +G HDFTTFRS + P++T+ +V ++E+ + Sbjct: 127 AKHFLGTHDFTTFRSKTPETWTKDPVKTMKVVEVRRASCFLKEHDPFCRDLEVLELIFKS 186 Query: 191 RSFLH--------TQIRSFVGSLKLVGDGKWTSTDLEKALQAQD---RKECGPLAPPEGL 239 RSFL+ Q+R G L +G GK D+ L + + +AP GL Sbjct: 187 RSFLYRQAIVLSLLQVRRMTGLLVAIGRGKLQPEDVCTLLAVRKIAAYPKAAQVAPAHGL 246 Query: 240 YFDSVEYS 247 Y +VEY+ Sbjct: 247 YLCNVEYN 254 >gi|170780769|ref|YP_001709101.1| tRNA pseudouridine synthase A [Clavibacter michiganensis subsp. sepedonicus] gi|169155337|emb|CAQ00440.1| putative pseudouridylate synthase [Clavibacter michiganensis subsp. sepedonicus] Length = 323 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 110/244 (45%), Gaps = 34/244 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+G+ GW +Q ++QGS+E A+ + T + AGRTD+GVHA Sbjct: 1 MRLRLDVAYDGTGFAGWAKQPGLRTVQGSLEDALAQLLARTPPAPTLVVAGRTDAGVHAT 60 Query: 59 RQVAHFDLVR----------------------EWVPVILCKAL------NAYLKISDTIS 90 QVAH DL + VP A N L + Sbjct: 61 GQVAHLDLTEAQIASLDRPPRGRAAEATAGEGQHVPTAARAASALARRLNGVLGARSDVV 120 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHL 149 +L + F ARFSA R+Y YR+ P L++ R +P +LD ++ AA L Sbjct: 121 VLACAPAPDGFDARFSATWRAYRYRVADADGPRDPLQRHRTVEVPVALDAAVLQEAADAL 180 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 +G HDF + + +S IRT+ + + +E V A +F H+ +R+ VG+ Sbjct: 181 LGLHDFAAYCKPR-EGASTIRTLQELTWIRAADGALEAVVRADAFCHSMVRALVGACVAA 239 Query: 209 GDGK 212 G+ Sbjct: 240 ASGR 243 >gi|269955466|ref|YP_003325255.1| tRNA pseudouridine synthase A [Xylanimonas cellulosilytica DSM 15894] gi|269304147|gb|ACZ29697.1| tRNA pseudouridine synthase A [Xylanimonas cellulosilytica DSM 15894] Length = 293 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 118/276 (42%), Gaps = 38/276 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRT 51 M+R + + Y+G+ + GW RQ ++QG +E + L + V AGRT Sbjct: 1 MVRVRLDLAYDGTQFAGWARQPALRTVQGVLEDGLEQIVRTAPRGLPAPRLTV---AGRT 57 Query: 52 DSGVHALRQVAHFDL-VREWVPVI----------LCKALNAYLKISDTISILNLSIVDKQ 100 D+GVHA QVAH DL V WV + L L L + + ++ Sbjct: 58 DAGVHARGQVAHVDLPVERWVALPGRSDREPGESLVTRLTGVLPPD--VVVHRAALAPAG 115 Query: 101 FHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFSA+ R Y +RI A L + + LD M A Q L G DF + Sbjct: 116 FDARFSALYRRYAFRIADDAAARDPLHRAHVLWHRRPLDVAAMHDAVQPLRGVRDFAAY- 174 Query: 160 SIHCQASSPIRTIDHFDVNSF--------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 C+ TI S+ L+ RVVA +F H +R+ VG+ VG+G Sbjct: 175 ---CKPRPGATTIRELKELSWTRPADGPDAGLVVARVVADAFCHNMVRALVGASIAVGEG 231 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + + L ++ R+ + PP GL + V Y Sbjct: 232 RKPVSWPAEVLASKQRERAAAVVPPRGLTLEEVVYP 267 >gi|148273765|ref|YP_001223326.1| tRNA pseudouridine synthase A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831695|emb|CAN02664.1| putative tRNA pseudouridine synthase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 334 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 34/243 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHALR 59 R + I Y+G+G+ GW +Q ++QG++E A+ + T + AGRTD+GVHA Sbjct: 13 RLRLDIAYDGTGFAGWAKQPGLRTVQGALEDALAQLLARTPPAPTLVVAGRTDAGVHATG 72 Query: 60 QVAHFDLVREW----------------------VPVI------LCKALNAYLKISDTISI 91 QVAH DL E VP + L + LN L + + Sbjct: 73 QVAHLDLTDEQIASLDRPPRGRAAAADAGEGAHVPSVDRAAAALARRLNGVLGARSDVVV 132 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLV 150 L + F ARFSA R+Y YRI P L++ R +P +LD ++ AA L+ Sbjct: 133 LACAPAPDGFDARFSATWRAYRYRISDVDGPRDPLQRHRTVELPVALDAAVLQEAADALL 192 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 G HDF + + +S IRT+ + +E V A +F H+ +R+ VG+ Sbjct: 193 GLHDFAAYCKPR-EGASTIRTLQELTWTRASDGALEATVRADAFCHSMVRALVGACVAAA 251 Query: 210 DGK 212 G+ Sbjct: 252 SGR 254 >gi|116007752|ref|NP_001036574.1| CG34140 [Drosophila melanogaster] gi|113194868|gb|ABI31225.1| CG34140 [Drosophila melanogaster] gi|238231868|gb|ACR40402.1| RE01995p [Drosophila melanogaster] Length = 306 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 133/302 (44%), Gaps = 57/302 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N SIQG +E A +F T EI V + R Sbjct: 1 MYRYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTNEIHTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL DL R + IL LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTVQVDLERPNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALE---KGRAW--LIP------------KSLDCENMRIAAQH 148 AI R+YLYR + P + + R++ IP S D + ++ AA+ Sbjct: 120 DAIGRTYLYRFAVAKVPTLGDCSLRNRSFETFIPVEEIDRCYFLQSSSFDIKRVQAAARM 179 Query: 149 LVGRHDFTTFRSIHCQASS------PIRTIDHFDV----------NSFG-----NLIEIR 187 +G HDF TF S+ Q +R ID ++ N+ N +I Sbjct: 180 FIGVHDFRTFMSVSRQKVCRDHPMFTVRKIDEINIRPGETRALSSNAIQAAETYNYWDIE 239 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSV 244 + A+SFL+ Q+R VG+L +G+G+ L + L + LAP GLY V Sbjct: 240 IRAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDHRVLLAPACGLYLCRV 299 Query: 245 EY 246 Y Sbjct: 300 HY 301 >gi|240167785|ref|ZP_04746444.1| tRNA pseudouridine synthase A [Mycobacterium kansasii ATCC 12478] Length = 248 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 22/233 (9%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI--------------LC 76 ++ A+ + + + AGRTD+GVHA QVAH D+ + +P L Sbjct: 2 LDAALTTIFRTPIRLRAAGRTDAGVHASGQVAHADVPVDALPNAYSHSVRAGHPEFRPLV 61 Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR---AWLI 133 + L+ +L SD + ++++ + F ARFSA+ R Y+YR+ T + + R AW Sbjct: 62 RRLSRFLP-SD-VRVIDIVRAPRDFDARFSALCRHYVYRLSTAPYGVVPQLARYVTAW-- 117 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSF 193 P+ LD E M IA++ L+G HDF F H ++ IR + D G+L+ V A +F Sbjct: 118 PRDLDVEAMTIASRELLGLHDFAAF-CRHRDGATTIRDLQRLDWARDGDLVTAHVTADAF 176 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +RS VG++ VG+ + ++ + L A R AP GL V+Y Sbjct: 177 CWSMVRSLVGAVLAVGEHRRSTAWCRELLTATGRSSDFAAAPAHGLTLVQVDY 229 >gi|154486775|ref|ZP_02028182.1| hypothetical protein BIFADO_00600 [Bifidobacterium adolescentis L2-32] gi|154084638|gb|EDN83683.1| hypothetical protein BIFADO_00600 [Bifidobacterium adolescentis L2-32] Length = 306 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 52/291 (17%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G+G++GW +Q ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHFDLVREW---------VPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 VHA QV H D+ + VP ++ + I+I ++ F ARF Sbjct: 65 VHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPNGFDARF 124 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWL--IPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 SA+ R+Y+YRI R + + + R ++ I LD + M AA +G HDF +F + + Sbjct: 125 SALERTYVYRIADRSSEVD-PRTRNFVLHIDDELDLKAMNEAAAMTIGLHDFGSFATPNP 183 Query: 164 QASS------------PIRT-IDHFDVNSFGN----------LIEIRVVARSFLHTQIRS 200 ++ P RT ID D + G L+ +VA +F +RS Sbjct: 184 GGTTIREVKTAYWRRVPQRTLID--DGMTMGERYRTPTVESGLVCFVIVADAFARNMVRS 241 Query: 201 FVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V VG GK W + + L+ GP+A P+GL + +EY Sbjct: 242 LVNGCVQVGIGKRSLDWFAGKMAAPLR---EGSTGPIA-PQGLTLEHIEYP 288 >gi|212716584|ref|ZP_03324712.1| hypothetical protein BIFCAT_01513 [Bifidobacterium catenulatum DSM 16992] gi|212660288|gb|EEB20863.1| hypothetical protein BIFCAT_01513 [Bifidobacterium catenulatum DSM 16992] Length = 306 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 52/290 (17%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G+ ++GW +Q + ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTDFYGWAKQPDMRTVQGEIERVLHTILRVPEGDDNEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHFDLVREWV----------PVI-LCKALNAYLKISDTISILNLSIVDKQFHA 103 VHA QV H D+ E + PV+ L + L L + I+I ++ + F A Sbjct: 65 VHASHQVCHLDINEETLARCVGHMQVEPVMALTRRLQRML--PNDIAIHSIKEAPEGFDA 122 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R+Y+YRI R + + + L I +LD M AA+ +G HDF +F + + Sbjct: 123 RFSALERTYVYRIADRSSEIDPRTRNSVLHIDDNLDIAVMNKAAEMTIGLHDFGSFATPN 182 Query: 163 CQASSPIRTIDHF------------DVNSFGN----------LIEIRVVARSFLHTQIRS 200 ++ IR + D + G L+ +VA +F +RS Sbjct: 183 PGGTT-IREVKTAYWRRIPQHPLIDDGTTMGERYRTPALESGLLCFTIVADAFARNMVRS 241 Query: 201 FVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V VG GK W + + L+ GP+A P+GL + +EY Sbjct: 242 LVNGCVQVGIGKRSLDWFAGKMATPLR---EGSTGPIA-PQGLTLEHIEY 287 >gi|94266218|ref|ZP_01289926.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] gi|93453191|gb|EAT03652.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] Length = 319 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I ++G+ + GWQRQ++ +IQ ++E + + GE VV+HGAGRTD+GVHA VA F Sbjct: 5 LTIAFDGTAFAGWQRQRHQPTIQATLEDGLARLLGEKVVLHGAGRTDAGVHAAGMVASFQ 64 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 R+ LN+ L + I IL V FHARFSA + Y+Y T Sbjct: 65 TARQLPLAAYRHGLNSMLPPA--IRILAAREVAADFHARFSAKGKIYVYGFTTAAIISPR 122 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 + + P S + ++ A L+G HDFT+F + Sbjct: 123 RRLYSAHFPGSFNPGPVQEALPGLLGEHDFTSFEA 157 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 29/59 (49%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V FL +R+ VG+L +G GK T L + L +DR GP AP GL V Y Sbjct: 261 VAGDGFLRHMVRNLVGTLLEIGRGKRTPESLPQLLAGRDRCRAGPTAPAHGLTLWRVLY 319 >gi|297564067|ref|YP_003683040.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848516|gb|ADH70534.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 279 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 121/254 (47%), Gaps = 15/254 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q ++QG +E A+ V V + AGRTD+GVHA Q Sbjct: 6 VRVRLDVAYDGTDFSGWAAQPGRRTVQGELEAALARVLRLPEVSLTCAGRTDAGVHARGQ 65 Query: 61 VAHFDL-VREWVPV---ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 VA D+ R W +L + K + + + F ARFS + R YLYR+ Sbjct: 66 VAQADIPARTWESEGERVLRRLAGVLPK---DVRVRAARLAPPGFDARFSPLFRRYLYRV 122 Query: 117 ITRQAPLALEK--GRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 AP ++ R L +S LD + M AA+ LVG HDF F + ++ IR + Sbjct: 123 S--DAPYGVDPLLRRDVLWHRSPLDVDRMNAAAERLVGEHDFAAF-CKRREGATTIRELL 179 Query: 174 HFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + +L+ + A +F H +R+ VG+L VGDG+ + K L A R Sbjct: 180 RLEWTRVDEHLLHGTIQADAFCHNMVRALVGALLAVGDGRRDADWPGKVLGAGTRDSSVH 239 Query: 233 LAPPEGLYFDSVEY 246 + P+GL + V Y Sbjct: 240 VVGPQGLSLEEVRY 253 >gi|298253049|ref|ZP_06976841.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 5-1] gi|297532444|gb|EFH71330.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 5-1] Length = 305 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 129/287 (44%), Gaps = 46/287 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ +V E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPVLRTVQGDIEAALHMVLRVPKNDPTESLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK---------ALNAYLK--ISDTISILNLSIVDKQFHA 103 VHA QV H D+ E ++ C AL LK + IS+ +S+ F A Sbjct: 61 VHASHQVCHLDVCEET--LLRCVGHTGLDGVCALEYRLKHVLPQDISLHKVSVAPIGFDA 118 Query: 104 RFSAIRRSYLYRIITRQAPLALE---KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 RFSA+ R+Y+YRI + +G + LD + M AA+ ++G HDF +F Sbjct: 119 RFSALERTYVYRICDASDYCDYDPRMRGFVLKLDDVLDVDAMNQAARLMIGLHDFGSFAR 178 Query: 161 IHCQASSPIRTIDHFDVNSFGN--------------------LIEIRVVARSFLHTQIRS 200 + + IR + G L+E +VA +F H +RS Sbjct: 179 PN-PGGTTIRDVKSVCWERVGTRANDVRVKLKTGCVPPVEQGLLEFTIVADAFAHNMVRS 237 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 V + +G GK + E+ + R+ GP+ P GL + V Y Sbjct: 238 LVQACVQIGCGKRSFDWFEEKINVPLREGSTGPID-PHGLTLEYVAY 283 >gi|242310521|ref|ZP_04809676.1| tRNA pseudouridine synthase A [Helicobacter pullorum MIT 98-5489] gi|239522919|gb|EEQ62785.1| tRNA pseudouridine synthase A [Helicobacter pullorum MIT 98-5489] Length = 241 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 117/254 (46%), Gaps = 22/254 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ M I YNG+ + G+Q+QK+ S+ G +E+ +F G + G+GRTD GVHA Q Sbjct: 2 MMKVAMKIAYNGANFCGFQKQKDRQSVSGFLEE-VFGSVGIFEKIIGSGRTDKGVHASAQ 60 Query: 61 VA-------HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H DL + L + LN LK+ + I + VD FHARF A RR Y Sbjct: 61 VISLKIPDFHKDLQK------LQEILN--LKLYPLVKIKKIWRVDDDFHARFDAKRRGYC 112 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTI 172 Y I +P + + ++ A + G H+F F ++ A +R I Sbjct: 113 YVISQEYSPFIAPFAHYYCFQ---NVGIIKEALREFEGLHNFKAFMKNDGSGAKGSVREI 169 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + G FL +QIR VG L + G +DL+K L + R P Sbjct: 170 YKARLLKRGKFYIFLFWGNGFLRSQIRLMVGYLLEIDKGNLQISDLKKQLLGE-RIFSIP 228 Query: 233 LAPPEGLYFDSVEY 246 APP GL+ SV+Y Sbjct: 229 -APPNGLFLSSVKY 241 >gi|291234813|ref|XP_002737344.1| PREDICTED: MGC80334 protein-like [Saccoglossus kowalevskii] Length = 520 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 108/228 (47%), Gaps = 32/228 (14%) Query: 1 MIRYCMIIEYNGSGYFGW-QRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHAL 58 M RY + I Y G+ + G Q ++Q IE A+ L E ++ + RTD+GVHAL Sbjct: 1 MCRYLLYISYLGTNFRGVVQTNSTSPTVQRVIEGALHTLKPQEAAKLYFSSRTDAGVHAL 60 Query: 59 RQVAHFDLVRE-----WVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSY 112 AH D VR + +L LN L I+ I I ++ V +FHARF A R+Y Sbjct: 61 NNTAHVDFVRRNNQQPFSGEVLKTILNNKLLIAQQDIRINDVKKVPDEFHARFQAKGRTY 120 Query: 113 LYRIITR------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA- 165 +YRI + PL E R W++ LD E M+ A + +G HDF FRS + + Sbjct: 121 VYRIASNWNCALNHIPL-FENHRCWMVSYRLDIEKMKQACEVFIGTHDFAAFRSKNNKNV 179 Query: 166 -SSPIRTIDHFDVNSFGNLI---------------EIRVVARSFLHTQ 197 S +RTID ++ ++ EI A+SFL+ Q Sbjct: 180 HKSTVRTIDSINIRKSHGILQHLSPCETDARIEYYEIEFKAKSFLYKQ 227 >gi|88603643|ref|YP_503821.1| tRNA pseudouridine synthase ACD [Methanospirillum hungatei JF-1] gi|88189105|gb|ABD42102.1| tRNA pseudouridine synthase A [Methanospirillum hungatei JF-1] Length = 276 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 116/248 (46%), Gaps = 27/248 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF----LVTGEIVVVHGAGRTDSGVHA 57 +R I Y G+ +FG Q Q + +++G IE A + + ++ + +GRTD GVHA Sbjct: 11 VRLAFRIGYIGTSFFGSQYQPDQRTVEGEIEAACLRAGIITSRQVSRLALSGRTDRGVHA 70 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ P + +ALN ++ I + + + F+ R+ I R+Y Y Sbjct: 71 KCQILALSTHN---PDLAVRALNG--QLPPDIWVSAWAYAPESFYPRYDVIIRTYRY-YF 124 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +R P S D MR AA +G HDF F I SP++TID +V Sbjct: 125 SR--------------PPS-DINAMRDAAGLFLGTHDFRCFARIE-PGKSPVKTIDRIEV 168 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S N + V A+SFL +R GSL V +G+ DL + L+ + + + P APPE Sbjct: 169 ISDENGCRLEVTAQSFLWHMVRCMAGSLYQVSEGEMAIRDLTQYLKGECKNKVKP-APPE 227 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 228 GLILWDVQ 235 >gi|94270473|ref|ZP_01291754.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] gi|93450785|gb|EAT01835.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] Length = 319 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I ++G+ + GWQRQ++ +IQ ++E + + GE VV+HGAGRTD+GVHA VA F Sbjct: 5 LTIAFDGTAFAGWQRQRHQPTIQATLEDGLARLLGEKVVLHGAGRTDAGVHAAGMVASFQ 64 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 R+ LN+ L + I IL V FHARFSA + Y+Y T Sbjct: 65 TARQLPLAAYRHGLNSMLPPA--IRILAAREVAADFHARFSARGKIYVYGFTTAAIISPR 122 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 + + P S + ++ A L+G HDFT+F + Sbjct: 123 RRLYSAHFPGSFNPGPVQEALPGLLGEHDFTSFEA 157 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 29/59 (49%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V FL +R+ VG+L +G GK T L + L +DR GP AP GL V Y Sbjct: 261 VAGDGFLRHMVRNLVGTLLEIGRGKRTPESLPQLLAGRDRCRAGPTAPAHGLTLWRVLY 319 >gi|212697539|ref|ZP_03305667.1| hypothetical protein ANHYDRO_02112 [Anaerococcus hydrogenalis DSM 7454] gi|212675538|gb|EEB35145.1| hypothetical protein ANHYDRO_02112 [Anaerococcus hydrogenalis DSM 7454] Length = 242 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 106/215 (49%), Gaps = 7/215 (3%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I+Y+GS + G+Q QK+ ++Q +E+AI VTGE + +GRTDSGVHA +F Sbjct: 10 IQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANEMYVNFLTA 69 Query: 68 REWVPVILCKALNAYLKISDTISILNLS--IVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ++ I + +LK IL LS VDK FHARFS ++Y Y I + + Sbjct: 70 KD----IRADKFHFHLKKYLPADILALSSKKVDKNFHARFSVKTKTYKYVISLEKILHPI 125 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFGNLI 184 + I LD + ++ + L G HDF F S + IR ID N++ Sbjct: 126 YRNYMEQITYKLDFDKLKQGMEILKGEHDFRAFMLSEKNDIINTIRKIDDCYYILDNNIL 185 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + A SFLH Q+R GSL + GK + D + Sbjct: 186 FLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFK 220 >gi|225351017|ref|ZP_03742040.1| hypothetical protein BIFPSEUDO_02599 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158473|gb|EEG71715.1| hypothetical protein BIFPSEUDO_02599 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 331 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 54/292 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + + Y+G+ ++GW +Q + ++QG IE+ + + E + + AGRTD+G Sbjct: 30 VRLRIDLAYDGTDFYGWAKQPDIRTVQGEIERVLHTILRVPEGDDNEPLRLTVAGRTDTG 89 Query: 55 VHALRQVAHFDLVREWV----------PVILCKALNAYLK--ISDTISILNLSIVDKQFH 102 VHA QV H D+ E + PV+ AL L+ + + I+I ++ + F Sbjct: 90 VHASHQVCHLDINEETLARCVGHMQVEPVM---ALTRRLQRMLPNDIAIRSIKEAPEGFD 146 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFSA+ R+Y+YRI R + + + L I +LD M AA+ +G HDF +F + Sbjct: 147 ARFSALERTYVYRIADRSSEIDPRTRNSVLHIDDNLDIGAMNKAAEMTIGLHDFGSFATP 206 Query: 162 HCQASSPIRTIDHF------------DVNSFGN----------LIEIRVVARSFLHTQIR 199 + ++ IR + D + G L+ +VA +F +R Sbjct: 207 NPGGTT-IREVKTAYWRRIPQHPLIDDGTTMGERYRTPALESGLLCFTIVADAFARNMVR 265 Query: 200 SFVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 S V VG GK W + + L+ GP+A P+GL + +EY Sbjct: 266 SLVNGCVQVGIGKRSLDWFAGKMATPLR---EGSTGPIA-PQGLTLEHIEYP 313 >gi|195170621|ref|XP_002026110.1| GL16086 [Drosophila persimilis] gi|194110990|gb|EDW33033.1| GL16086 [Drosophila persimilis] Length = 504 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 119/267 (44%), Gaps = 57/267 (21%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTINKLEPQSLDTNSVQGCLELALRVFHPTNEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTVHVDLARRDGQPYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPDTFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALEKGRA------------------WLIPKSLDCENMRIAAQ 147 AI R+YLYR + PL + G+ +L+ + D E +R AA+ Sbjct: 120 HAIGRTYLYRFAVARKPL-FDDGKLRNKGFEAFVPVEEIDRCYFLLAPTFDIERIRNAAR 178 Query: 148 HLVGRHDFTTFRSIHCQASSP-------IRTIDHFDVNSFGNLI---------------E 185 +G HDF TF S+ Q S +R ID ++ L + Sbjct: 179 MFIGVHDFRTFMSVSRQKSLSRDHPMFTLRKIDEINIRPGRTLALPSNATLAAETYDYWD 238 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGK 212 I + A+SFL+ Q+R VGSL +G + Sbjct: 239 IEIKAKSFLYKQVRRIVGSLLSLGSDR 265 >gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219] gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219] Length = 273 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 111/251 (44%), Gaps = 29/251 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV------VHGAGRTDSGV 55 +R + I Y GS Y G Q Q S+I+G I +A L + EI+ +GRTD+GV Sbjct: 1 MRVALKIAYIGSSYRGSQVQPGVSTIEGKIFEA--LQSLEIIEDPSSARFVSSGRTDTGV 58 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA+ QV FD + + + + +N+ K+ I + + VD FH R AI R+Y Y Sbjct: 59 HAMGQVVAFDTDKP--KLAIPRVINS--KLPGDIWAWSRAEVDSDFHPRRYAINRTYRYI 114 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + A D +R A L G HDF F S IR I+ Sbjct: 115 TPSMDA----------------DISKLRAACSILEGSHDFANF-CFRDTGRSTIRRIEKI 157 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 DV GNL+ I + A SFL IR V L LVG G LE L +E A Sbjct: 158 DVRLAGNLLRIDITANSFLWKMIRKIVTVLLLVGSGARDLDWLENMLDPASYEEGIKPAK 217 Query: 236 PEGLYFDSVEY 246 P GL +V Y Sbjct: 218 PYGLILTNVNY 228 >gi|14521207|ref|NP_126682.1| tRNA pseudouridine synthase A [Pyrococcus abyssi GE5] gi|14548295|sp|Q9UZZ3|TRUA_PYRAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|5458425|emb|CAB49913.1| truA pseudouridylate synthase I [Pyrococcus abyssi GE5] Length = 263 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 30/250 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I Y+G+ + G+QRQ N +++G I KA+ A RTD GV AL V Sbjct: 1 MRVAFKIAYDGTRFHGFQRQPNLRTVEGEIIKALNNSGIMYSDFKSASRTDRGVSALGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYL---KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 E KALN + ++ D + IL+ V + FH RF A + Y Y Sbjct: 61 VAITTEDE-------KALNPMVLNARLED-VWILSAIEVPQDFHPRFWAKSKVYRY---- 108 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +L L+ E ++ +Q +G HDF+ F + + + +R+ID +V Sbjct: 109 ------------YLPSIGLEVEKVKECSQLFLGVHDFSAFSRVDGRDT--VRSIDRIEVF 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPE 237 + G ++ I + A+SFL +R V +L+L G G+ + ++++ L+ + ++ + P APPE Sbjct: 155 TLGPILIIEIEAKSFLWEMVRRIVKALELCGLGRLSCEEIKEMLEGKFEKSKKVPPAPPE 214 Query: 238 GLYFDSVEYS 247 GL ++Y Sbjct: 215 GLLLVDIKYE 224 >gi|268679755|ref|YP_003304186.1| tRNA pseudouridine synthase A [Sulfurospirillum deleyianum DSM 6946] gi|268617786|gb|ACZ12151.1| tRNA pseudouridine synthase A [Sulfurospirillum deleyianum DSM 6946] Length = 247 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 119/256 (46%), Gaps = 20/256 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 +R +I+ Y+GS ++G+QRQ N + ++ G +EK++ + +V G+GRTD GVHA Sbjct: 1 MRVKLILSYDGSHFYGFQRQNNENEHFQTVTGILEKSLKALGIHTPIV-GSGRTDRGVHA 59 Query: 58 LRQVAHFDLVREW------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 LRQV H DL W + +L ++L +L I L FHARFSA +R Sbjct: 60 LRQVVHLDLPLFWEKEYEKLRSLLNRSLMPHLYIQQIHPTL------PNFHARFSAQKR- 112 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 LYR L +LD + + AQ G H+F F+ + R Sbjct: 113 -LYRYFLYDGVYQPFYAHYALHVNALDVQRLHHVAQSFQGAHNFEFFKKQGGGLTRDERI 171 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + +LI I + +FL +QIR +L V + +L L+ +++K Sbjct: 172 LYKVGAYRYKHLIVIYFLGDAFLRSQIRMMCDALLKVCYDEIREEELIAQLR-REKKVST 230 Query: 232 PLAPPEGLYFDSVEYS 247 L PP GLY + Y Sbjct: 231 TLLPPSGLYLSRIFYE 246 >gi|198462560|ref|XP_001352470.2| GA20054 [Drosophila pseudoobscura pseudoobscura] gi|198150878|gb|EAL29967.2| GA20054 [Drosophila pseudoobscura pseudoobscura] Length = 504 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 119/267 (44%), Gaps = 57/267 (21%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTINKLEPQSLDTNSVQGCLELALRVFHPTNEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTVHVDLARRDGQPYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPDTFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALEKGRA------------------WLIPKSLDCENMRIAAQ 147 AI R+YLYR + PL + G+ +L+ + D E +R AA+ Sbjct: 120 HAIGRTYLYRFAVARRPL-FDDGKLRNKGFEAFVPVEEIDRCYFLLAPTFDIERIRNAAR 178 Query: 148 HLVGRHDFTTFRSIHCQASSP-------IRTIDHFDVNSFGNLI---------------E 185 +G HDF TF S+ Q S +R ID ++ L + Sbjct: 179 MFIGVHDFRTFMSVSRQKSLSRDHPMFTLRKIDEINIRPGRTLALPSNATLAAETYDYWD 238 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGK 212 I + A+SFL+ Q+R VGSL +G + Sbjct: 239 IEIKAKSFLYKQVRRIVGSLLSLGSDR 265 >gi|212223540|ref|YP_002306776.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1] gi|229470756|sp|B6YTJ2|TRUA_THEON RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212008497|gb|ACJ15879.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1] Length = 267 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 115/250 (46%), Gaps = 26/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHA 57 +R + I Y+G+ ++G+QRQ +++G I +A+ + E GA RTD GV A Sbjct: 1 MRLALRIAYDGTAFYGFQRQPGLRTVEGEIIRALTKLGIIEDVESSNFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V FD+ ++ + LN +LK + +L + V + FH RF A ++Y Y Sbjct: 61 FFNVVAFDVASR-PDLVRPEVLNFHLK---DVWVLGTAEVPEDFHPRFWAKSKTYRY--- 113 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +LI D + MR A+ +G HDF+ F + +P+R + D+ Sbjct: 114 -------------YLIDAGFDEKAMRECAKLFIGTHDFSAFARLEPH-KNPVRELIRADI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I + +SFL R V +L+ G G T ++EK L + ++ P A PE Sbjct: 160 IKRQGYYIIELEGKSFLWEMARRIVNALRFCGLGILTEEEVEKMLNGEYSRKIPP-ARPE 218 Query: 238 GLYFDSVEYS 247 GL +EY Sbjct: 219 GLVLWGIEYE 228 >gi|227485306|ref|ZP_03915622.1| tRNA-pseudouridine synthase I [Anaerococcus lactolyticus ATCC 51172] gi|227236766|gb|EEI86781.1| tRNA-pseudouridine synthase I [Anaerococcus lactolyticus ATCC 51172] Length = 246 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 112/251 (44%), Gaps = 10/251 (3%) Query: 1 MIRYCMI-IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MI+ ++ + ++G + G+Q Q + S++ + KAI VTGE + GRTD+GVHA Sbjct: 1 MIKNVLLKLAFDGRDFKGYQYQIDQRSVEEELRKAIKEVTGEDNRIIACGRTDAGVHARS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F + P + +L D I L+ V FHARFS ++Y Y I Sbjct: 61 FYINFLTACDVNPKGFAYHIQPHL--PDDILALSSKEVGLDFHARFSCKSKTYKYIINQE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----RSIHCQASSPIRTIDHF 175 + P + + I LD + + + L G HDF F ++I + R ID Sbjct: 119 KNPHPIYRSYMENITYRLDYDKLDEGLEILKGDHDFRLFMKEDKNIDINTN---RRIDDC 175 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +E+ A SFLH Q+R GSL + GK + D + +K P Sbjct: 176 YFKRGETRLELYFKAESFLHNQVRIMTGSLIELARGKLSLDDFKAYFDPATKKRANPALS 235 Query: 236 PEGLYFDSVEY 246 P GLY VEY Sbjct: 236 PVGLYLWEVEY 246 >gi|167948002|ref|ZP_02535076.1| tRNA pseudouridine synthase A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 201 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 2/150 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+GSG+ GWQ+Q + S+Q +E A+ V + V VH AGRTD+GVH QV Sbjct: 19 MKIALGVEYDGSGFNGWQKQSHARSVQEDLEAALSRVADQPVRVHCAGRTDTGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E P L + + + + +S+ V FHARFSA R Y Y I+ R Sbjct: 79 VHFETTAERPPRAW--VLGSNVNLPNDVSVSWARQVADDFHARFSATGRHYRYLILNRGT 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 AL + RA LD M+ A + G Sbjct: 137 RSALWRNRATWHHHPLDEHRMQPAGTGIGG 166 >gi|195953438|ref|YP_002121728.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. Y04AAS1] gi|229470758|sp|B4U9D9|TRUA_HYDS0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|195933050|gb|ACG57750.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. Y04AAS1] Length = 247 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 23/258 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH------GAGRTDSG 54 M Y I + G+ Y GWQ Q N +IQ +E+ ++ + + + G RTD G Sbjct: 1 MKNYKFTISFVGTNYSGWQYQPNVPTIQNEVEEKLYYIVNKKKPIKQKIRAIGCSRTDKG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA+ V + + + L KALN+ L I I N+ V +F++RF A++++Y+Y Sbjct: 61 VHAIEFVFNVKMEFDKDLNFLRKALNSAL--PKDIKIHNIEEVPLEFNSRFDALKKTYIY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF------RSIHCQASSP 168 ++ + + RA L+ K D M + +G DF F + +C + Sbjct: 119 KLFFDEKNSPFFQDRAMLVYKPTDLGKMMEISHLFLGYKDFRGFTKELEDENGYCSVENI 178 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 +D+ L+EI + A FL +R VG++ G + D+ L+A ++ Sbjct: 179 TFKVDY-------PLVEISITANRFLRYMVRRMVGTMLSYAQGLISIDDVNDFLKA--KR 229 Query: 229 ECGPLAPPEGLYFDSVEY 246 A GLY V Y Sbjct: 230 VSNHTAKAHGLYLKKVYY 247 >gi|145596404|ref|YP_001160701.1| tRNA-pseudouridine synthase I [Salinispora tropica CNB-440] gi|145305741|gb|ABP56323.1| tRNA-pseudouridine synthase I [Salinispora tropica CNB-440] Length = 276 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 116/254 (45%), Gaps = 16/254 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW Q ++ G++ +A+ LV G + AGRTD+GVHA Q Sbjct: 6 RVRLDVSYDGADFSGWAVQPERRTVAGALVQALDLVLGVGAATGLTVAGRTDAGVHATGQ 65 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL+ E W + + I ++ F ARFSA R Y YR+ Sbjct: 66 VCHVDLLTEVWHRHEHTLLRRLARLLPADVRIRAMTEAPDDFDARFSATFRRYEYRVT-- 123 Query: 120 QAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 AP E R AW P LD + +AA LVG HDF + A++ +R + Sbjct: 124 DAPWGAEPLRRHDTLAW--PSRLDLAALNVAADGLVGEHDFAAYCRRKENATT-LREVTR 180 Query: 175 FDVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + G L+ V A +F +RS VG++ VGDG+ + L ++R Sbjct: 181 LEWRRAPDGTLVAT-VQADAFCQAMVRSLVGAMLAVGDGRRPADWPAGLLTRRERASEVN 239 Query: 233 LAPPEGLYFDSVEY 246 +AP GL +V Y Sbjct: 240 VAPAHGLTLVAVGY 253 >gi|325964130|ref|YP_004242036.1| pseudouridylate synthase I [Arthrobacter phenanthrenivorans Sphe3] gi|323470217|gb|ADX73902.1| pseudouridylate synthase I [Arthrobacter phenanthrenivorans Sphe3] Length = 296 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 27/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW Q ++QG +E+A+ L+ V V AGRTD+GVHA QV Sbjct: 17 LRVRLDLSYDGGPFSGWALQPGLRTVQGVLEEALHLLVRRPVRVTVAGRTDAGVHARGQV 76 Query: 62 AHFDLVR-EWV----------PVILCKALNAYLK-----ISDTISILNLSIVDKQFHARF 105 H DL EW+ V + + + L ++ + + + + F ARF Sbjct: 77 VHLDLTEAEWLGLPRGHELDPAVAMLRRIRGALSRILGDLTGAVEVHRIILAPPGFDARF 136 Query: 106 SAIRRSYLYRIITRQA---PLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRS 160 SA+ R Y YRI A PL GR + LD + + A L+G +F +F Sbjct: 137 SALWRRYSYRIADGPALWDPL----GRYSTLWHKNPLDVDLLNEGASKLLGLQNFLSFCK 192 Query: 161 IHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + ++ IR + F+ + +I V A +F H +R+ +GS VG+G L Sbjct: 193 PR-EGATTIRELQRFEFTRAEDGVIVATVQADAFCHNMVRALIGSALYVGEGVEEPGWLY 251 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L AQ R LA P L + V Y Sbjct: 252 ERLLAQKRDAKSVLAAPHPLVLEEVAYP 279 >gi|262203538|ref|YP_003274746.1| tRNA pseudouridine synthase A [Gordonia bronchialis DSM 43247] gi|262086885|gb|ACY22853.1| tRNA pseudouridine synthase A [Gordonia bronchialis DSM 43247] Length = 291 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 19/257 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y G+ + GW RQ + ++ +E + V V + AGRTD+GVHA QV Sbjct: 16 RLRLDVGYEGTDFAGWARQTDQRTVGAVLEDTLATVLRIPVRLTVAGRTDAGVHATGQVC 75 Query: 63 HFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 H D+ + P +L L L D + + ++ V F ARFSA+RR Y Y Sbjct: 76 HTDIPVSALQTRSIGGDPSLLVGRLAKMLP--DDVRVKEIASVSGDFDARFSALRRHYEY 133 Query: 115 RIITRQ---APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 R+ + P+ W P LD + M A+ L+G +DF F + ++ IR Sbjct: 134 RLTDARWGAEPIHARTTATWRRP--LDVDAMNAASASLLGLNDFAAFCRRR-EGATTIRD 190 Query: 172 IDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + F G ++ +V A +F + +RS VG++ VGDG+ D + L A+ ++ Sbjct: 191 LQQFSWTRHAGGVLVGQVSADAFCWSMVRSLVGAVASVGDGR-RDIDWCRGLLAETQRSS 249 Query: 231 G-PLAPPEGLYFDSVEY 246 P+A GL V+Y Sbjct: 250 QVPVADACGLCLVRVDY 266 >gi|330470142|ref|YP_004407885.1| tRNA-pseudouridine synthase i [Verrucosispora maris AB-18-032] gi|328813113|gb|AEB47285.1| tRNA-pseudouridine synthase i [Verrucosispora maris AB-18-032] Length = 276 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 116/254 (45%), Gaps = 14/254 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q + ++ G + + + LV G + AGRTD+GVHA Sbjct: 5 VRLRLDVAYDGTDFSGWAAQPDRRTVAGVLVQTLDLVLGAGTATGLTVAGRTDAGVHASG 64 Query: 60 QVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL V W + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPVEVWREHEGRLLRRLARLLPGDVRVRAMTEVPATFDARFSATFRRYEYRVT- 123 Query: 119 RQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 AP E R AW P+ LD + + A+ LVG HDF + A++ +R + Sbjct: 124 -DAPWGAEPLRRHEVLAW--PRPLDTDRLAAASAGLVGEHDFAAYCRRKENATT-LREVT 179 Query: 174 HFDVNSFGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D + I + V A +F +RS VG++ + GDG+ L ++R Sbjct: 180 RLDWRRDPDGILVATVQADAFCQAMVRSLVGAMLVAGDGRRPVEWPAGLLTRRERSSEVT 239 Query: 233 LAPPEGLYFDSVEY 246 +AP GL +V Y Sbjct: 240 VAPAHGLTLVAVGY 253 >gi|282163988|ref|YP_003356373.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE] gi|282156302|dbj|BAI61390.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE] Length = 279 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 31/251 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 ++ + Y G+ + G Q Q +++G + K + + GE V +GRTD+GVHAL Sbjct: 13 LKVAFKLAYVGTDFSGSQSQPGRRTVEGELRKGLVEKGIIGEKTKVEFSGRTDAGVHALG 72 Query: 60 QVAHF----DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV F D + E P I+ L A + + ++V F R A+ R+Y Y Sbjct: 73 QVIAFVPKNDKLTE--PRIINSVLPA------DMWVYAKAVVPDDFDPRRHAVSRTYRYL 124 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + AP +E+ + +Q G HDFT F S+ +P+RT+ Sbjct: 125 LY---APDVIER-------------RIVTYSQLFPGTHDFTNFSSVEPN-KNPVRTVKSI 167 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G++ I + A SFL +R V L+LVG K + +E+ L+ + +E P A Sbjct: 168 SVTKRGDMYVIDIEADSFLWNMVRKIVTGLRLVGSNKRPAQWIEQMLKPDEYREGIPPAL 227 Query: 236 PEGLYFDSVEY 246 GLY VEY Sbjct: 228 AAGLYLMKVEY 238 >gi|39938715|ref|NP_950481.1| tRNA pseudouridine synthase A [Onion yellows phytoplasma OY-M] gi|42559719|sp|P60351|TRUA_ONYPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39721824|dbj|BAD04314.1| pseudouridylate synthase [Onion yellows phytoplasma OY-M] Length = 243 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y+G+Q+Q ++Q + EKA+ +T + + A RTD GVH+ Q H Sbjct: 6 YKLILSYDGTCYYGYQKQPQKITVQQTFEKALKKMTHQNIPTFAASRTDKGVHSQGQTLH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P K LN YL D I + ++ FHAR+SA +S +Y+ + + PL Sbjct: 66 FQTTFFLKPTHFQKTLN-YLLPPD-IRVRQMNFATPNFHARYSA--KSKIYQYVFSKKPL 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + L + + A + + G H+F F S Q + +TI + + Sbjct: 122 NAFNHHFQIFADKLYFDKITKALKFIEGTHNFFAFTS-ETQPKNFSKTIFQAFLKETSHK 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + FL IR VGSL +G K + + L K+ LAP + L Sbjct: 181 YILVFHGNGFLKYMIRFLVGSLIEIGKNKLSLEQFQAMLLGNTTKKATLLAPSKALVLKK 240 Query: 244 VEY 246 + Y Sbjct: 241 IFY 243 >gi|85057773|ref|YP_456689.1| tRNA pseudouridine synthase A [Aster yellows witches'-broom phytoplasma AYWB] gi|123738898|sp|Q2NIY3|TRUA_AYWBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84789878|gb|ABC65610.1| tRNA pseudouridine synthase A [Aster yellows witches'-broom phytoplasma AYWB] Length = 243 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y G+Q+Q ++Q + EKA+ +T + + A RTD GVH+ Q H Sbjct: 6 YKLILSYDGTFYCGYQKQPQKKTVQQTFEKALKKMTHQNIPTFAASRTDKGVHSQGQTLH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P K LN YL D I + + FHAR+SA +S +Y+ + + PL Sbjct: 66 FQTTFSLKPKHFQKTLN-YLLPPD-IRVRQMHFATPNFHARYSA--KSKIYQYVFSKKPL 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + D + A + + G H+F F S Q + +TI + + Sbjct: 122 NAFNHHFQIFADKFDFVKITKALKFIEGTHNFFAFTS-ETQPKNFSKTIFQASLKETVHK 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + FL IR VGSL +G K++ + L K+ LAP + L Sbjct: 181 YILVFHGNGFLKYMIRFLVGSLIEIGKNKFSLEQFQAMLLGNKTKKATLLAPAKALVLKK 240 Query: 244 VEY 246 + Y Sbjct: 241 IFY 243 >gi|309812385|ref|ZP_07706140.1| tRNA pseudouridine synthase A [Dermacoccus sp. Ellin185] gi|308433690|gb|EFP57567.1| tRNA pseudouridine synthase A [Dermacoccus sp. Ellin185] Length = 282 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 17/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQ 60 +R+ + Y+G+ + GW RQ +++ + A+ V E V + AGRTD+GVHA Sbjct: 1 MRFRIDFAYDGTDFSGWARQPGRRTVEEELTGALTRVLRREDVRLTVAGRTDAGVHARGG 60 Query: 61 VAHFDL-VREWVPV----------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 V H D+ W + L LN L + + + S F ARFSA++ Sbjct: 61 VCHGDIDADAWAALPGRSERAPAQALVTRLNGVL--AGDVVVKAASEQPASFDARFSALK 118 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR++ A L L + ++ ++LD + M A+ L+G HDF + + ++ Sbjct: 119 RRYSYRLLDDAARLDPLRRRDTVVVKRTLDVDAMNAASALLIGLHDFAAYCKPR-EGATT 177 Query: 169 IRT-IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IRT +D+ ++ R+ A +F H+ +R+ +G + VG+G+ + L A R Sbjct: 178 IRTLLDYAWTREADGVLTARLEADAFCHSMVRALIGGVVPVGEGRRPIDWPAQVLTAGRR 237 Query: 228 KECGPLAPPEGLYFDSVEY 246 + PP GL + V Y Sbjct: 238 DPGVVVMPPHGLCLEEVSY 256 >gi|195135262|ref|XP_002012053.1| GI24889, isoform B [Drosophila mojavensis] gi|193918317|gb|EDW17184.1| GI24889, isoform B [Drosophila mojavensis] Length = 320 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 134/308 (43%), Gaps = 63/308 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F EI V + R Sbjct: 1 MHRYLLNISYIGTRFRGIQKTINKLEESRVDTNSVQGCLELALRVFRPVNEIQTV-LSSR 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + IL LN L K S I +L+ V FH R+ Sbjct: 60 TDAGVHALHSTVHVDLERNDGKCYDTTILTGVLNRTLDKQSLPIRVLSTQRVADTFHCRY 119 Query: 106 SAIRRSYLYRI-ITRQAPLALEKGRA---------------------WLIPKSLDCENMR 143 AI R+YLYR+ +++Q L ++ +L + D E + Sbjct: 120 HAIGRTYLYRVAVSKQKTTVLPDAKSSSLRNRAFEAFLPVEEWDRCYFLQNNNFDIERLI 179 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSP-------IRTIDHFDVNSFGNLI------------ 184 A++ L+G HD+ TF S+ Q S +R ID ++ +L Sbjct: 180 AASRMLIGVHDYRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGRSLALGPNATLATENY 239 Query: 185 ---EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG---PLAPPEG 238 +I + A+SFL+ Q+R VG+L + +G+ + + L + LAP G Sbjct: 240 DYWDIEIKAKSFLYKQVRRIVGTLLALAEGRIDERCIYQMLTIPSKHSWDHRIQLAPACG 299 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 300 LYLCRVHY 307 >gi|322374718|ref|ZP_08049232.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] gi|321280218|gb|EFX57257.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] Length = 191 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 6/193 (3%) Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + I+ Sbjct: 1 MEQVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEF-IV 57 Query: 118 TRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-- 174 R P + + A P LD E M+ A + L G HDFT F + +RTI Sbjct: 58 DRGRPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEAS 117 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A Sbjct: 118 LSVDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTA 177 Query: 235 PPEGLYFDSVEYS 247 P GLY + Y Sbjct: 178 APNGLYLKEIRYE 190 >gi|312892081|ref|ZP_07751581.1| tRNA-pseudouridine synthase I [Mucilaginibacter paludis DSM 18603] gi|311295453|gb|EFQ72622.1| tRNA-pseudouridine synthase I [Mucilaginibacter paludis DSM 18603] Length = 268 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 120/257 (46%), Gaps = 26/257 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ+ SIQ +E ++ V + G GRTD+ VHA + Sbjct: 1 MRYFVHLGYHGTQYSGWQKHAGVMSIQQVLENSLSQVLKTPTAIVGCGRTDAKVHASQFF 60 Query: 62 AHFDL--VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H D+ RE+ + L K L A + I D I + L HARF A +RSY Y I T Sbjct: 61 FHVDIDNPREFDLLFRLNKILPADIAIFDIIPMAGLP------HARFDATQRSYDYFIHT 114 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR---TIDHF 175 + P L ++ +SLD M+ A L HD+ F C+ SP R T+ H Sbjct: 115 YKDPF-LNGFSSYYNEQSLDLHEMKKAVALLPLYHDYRAF----CK--SPDRNEHTLCHV 167 Query: 176 DVNSF-----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-QAQDRKE 229 + I + A FL IR VG L +G G+ + + E+ L + Q+ + Sbjct: 168 TSAELFACKNADRIRFNISANRFLSKMIRVIVGRLISIGTGEMSVDEFEQNLIKPQNAQT 227 Query: 230 CGPLAPPEGLYFDSVEY 246 P A P+GLY V Y Sbjct: 228 ISP-AHPQGLYLSKVTY 243 >gi|116671484|ref|YP_832417.1| tRNA pseudouridine synthase A [Arthrobacter sp. FB24] gi|116611593|gb|ABK04317.1| tRNA pseudouridine synthase A [Arthrobacter sp. FB24] Length = 280 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW Q ++QG +E A+ L+ V V AGRTD+GVHA QV Sbjct: 1 MRIRLDLAYDGGPFSGWAVQPGLRTVQGVLESALALLIRRKVRVTVAGRTDAGVHARGQV 60 Query: 62 AHFDLV-REW----------VPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARF 105 H DL EW V L + L L ++ I + ++++ + F ARF Sbjct: 61 VHLDLTEEEWQGLNRGVELDPAVALLRRLRGALSRGLGDLTGAIEVHSVTVAPEGFDARF 120 Query: 106 SAIRRSYLYRIITRQA---PLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRS 160 SA+ R Y YRI A PL GR + + LD + A L+G +F ++ Sbjct: 121 SALWRRYSYRIADGPALWDPL----GRYSTLWHKEQLDVSLLNEGASKLLGLQNFRSYCK 176 Query: 161 IHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + S+ IR + F+ +I V A +F H +R+ VGS VG G L Sbjct: 177 PR-EGSTTIRELQRFEFARGTDGVIVATVQADAFCHNMVRALVGSALYVGSGAEKPGWLY 235 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 + L Q R L+ P L + V Y Sbjct: 236 ERLLEQKRDAKSVLSAPHPLVLEEVAY 262 >gi|328955882|ref|YP_004373215.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2] gi|328456206|gb|AEB07400.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2] Length = 299 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 116/247 (46%), Gaps = 10/247 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ---VAHF 64 + Y+G+ Y G+ Q + ++ G + +A+ + + AGRTD+GVHA+ Q VA Sbjct: 46 LGYDGTRYSGFAEQPDRCTVAGEVRQAMETFLRRPIELICAGRTDAGVHAIGQHVSVAVL 105 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E +A++A L IS+ + + F ARF A R+Y YRI A Sbjct: 106 PAECEIPRARWLRAMDALLPPD--ISVAGVFRARRGFSARFDARDRTYTYRIAAGSVRPA 163 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDVNSF 180 L + W LD MR AA LVG HDF +F A P + +D + Sbjct: 164 LIRPYVWWHRLELDEGAMRDAATCLVGEHDFKSFCRASSAAGRPTSRRVLDVDFAHESEL 223 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G N++ + +FLH+ +R+ VGSL VG + L AL A+DR GP AP GL Sbjct: 224 GENVLAFTIRGNAFLHSMVRTIVGSLAEVGTHRRDPAWLADALAARDRAAAGPTAPACGL 283 Query: 240 YFDSVEY 246 F V Y Sbjct: 284 CFMDVSY 290 >gi|197303254|ref|ZP_03168295.1| hypothetical protein RUMLAC_01977 [Ruminococcus lactaris ATCC 29176] gi|197297680|gb|EDY32239.1| hypothetical protein RUMLAC_01977 [Ruminococcus lactaris ATCC 29176] Length = 242 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 8/248 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + M ++Y+G+ Y GW + +K+ ++ +E+ + + G+ V +H A RT+ VHA Sbjct: 1 MNNFKMTLQYDGTRYLGWTKNEKSVKTVSYKLEQVLTRLLGQPVTLHAAVRTEPCVHASC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F+ + P +L K +N YL + I +L+L V +F A +Y Y + T Sbjct: 61 QVCSFEADLPFSPEVLKKQMNQYLPMD--IKVLSLLPVSGRFRADLGIRAYTYEYNVCTA 118 Query: 120 QA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + +A P D M+ AA L+G+HDF +F + + + + + + D Sbjct: 119 SVYDVFHSRYQAHFFPAP-DLALMKQAASCLIGKHDFQSFSPVRKKKGTK-KELLYLDFI 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + R+ A +FL + + VG+L +G GK + + + + G P +G Sbjct: 177 QNKEQLSFRLTANAFLPSMPQLIVGTLLEIGQGKRSPDCILSIFEGNETP--GNFCPSDG 234 Query: 239 LYFDSVEY 246 L+ ++Y Sbjct: 235 LFLTEIQY 242 >gi|153005130|ref|YP_001379455.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5] gi|152028703|gb|ABS26471.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5] Length = 265 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 117/255 (45%), Gaps = 18/255 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + + Y G + G+QRQ ++Q ++E A+ L G + A RTD+GVHAL QV Sbjct: 6 YALRVAYEGGRFRGFQRQPGLPTVQDALEGAL-LAAGVRATLAVAARTDAGVHALDQVVS 64 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P L ALNA L + +++L + V FHAR +A R Y+Y ++ P Sbjct: 65 FSARAALDPAALRGALNAALP--EGVAVLEVLRVAPSFHARNTARARRYVY-LVGAPPPE 121 Query: 124 ALEKGRAWLIPKS---------LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +L AW +P LD M A H VG HDFT F Q + +RT+ Sbjct: 122 SL-AAYAWTLPDPRAFPDGEARLDVAAMSAALAHAVGTHDFTAFARPGEQRGT-VRTVTR 179 Query: 175 FDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +V S + L + FL IR+ G+ VG G+ + + L A+ R G Sbjct: 180 AEVVSATWAPLHALVFEGHGFLRAMIRNLAGTAVTVGVGRAAPEIVRELLLARGRYR-GV 238 Query: 233 LAPPEGLYFDSVEYS 247 AP GL SV Y Sbjct: 239 RAPGWGLTLASVVYP 253 >gi|256825854|ref|YP_003149814.1| pseudouridylate synthase I [Kytococcus sedentarius DSM 20547] gi|256689247|gb|ACV07049.1| pseudouridylate synthase I [Kytococcus sedentarius DSM 20547] Length = 297 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 13/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R + Y+G + GW Q ++Q ++E+ + V + V + AGRTD+GVHA Sbjct: 20 MPRLRLDFAYDGRDFHGWATQPGLRTVQETLERGLATVLRAQDVSLTVAGRTDAGVHATG 79 Query: 60 QVAHFDLVRE-WVPV------ILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRR 110 V H D+ W V +AL L + + + + V F ARFSA+RR Sbjct: 80 AVCHLDVAHAAWAAVPGRSDRAPAEALVTRLAGVLPADLVVHRATEVPDAFDARFSALRR 139 Query: 111 SYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y Y + R+ L +G K LD E M AAQ LVG DF F + ++ + Sbjct: 140 HYRYLLCDRRETLDPRRRGMVVAWRKPLDAEAMHAAAQQLVGLGDFAAFCKPR-EGATTV 198 Query: 170 RTIDHFDVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 RT++ F + + V A +F H+ +R+ VG++ VG+G+ + + ++R Sbjct: 199 RTLERFTWHRDEQGWVVGEVSADAFCHSMVRALVGAVVPVGEGRQPVDWPRQVQEGRERL 258 Query: 229 ECGPLAPPEGLYFDSVEY 246 + P GL +V+Y Sbjct: 259 GAVQVMPAHGLTLVAVDY 276 >gi|251772807|gb|EES53368.1| Pseudouridylate synthase [Leptospirillum ferrodiazotrophum] Length = 294 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 116/254 (45%), Gaps = 15/254 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R +++ Y+G + GWQ Q N ++QG++ +A+ + V V G+GRTD+GV A QVA Sbjct: 13 RIALLLAYDGRDFSGWQVQPNRWTVQGTLGEALATLCRAPVGVTGSGRTDAGVSAWGQVA 72 Query: 63 HFDLVREW-VPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H DL + +PV L + LN ++ ++ +L+ V FHAR SA R +YR + R Sbjct: 73 HADLPEGFSIPVDRLPRILNT--RLPGSLRVLDCRSVSSSFHARHSA--RGKIYRYVFRH 128 Query: 121 APLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 P +L + +P + R A+ +G HDF F R ID Sbjct: 129 LPASLSHHPLATPFSAPLPPNFFLPRAREASTFFLGTHDFRHFSVASSLPDDSTRRIDGI 188 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGP 232 + + V FLH +R G L G+G+ ++ L+ + P Sbjct: 189 LWEERCAELILWVTGPGFLHKMVRMIGGYLLEAGEGRRPLEEIPALLRKGAPPPFRAVEP 248 Query: 233 LAPPEGLYFDSVEY 246 L PP+GL V Y Sbjct: 249 L-PPDGLALARVLY 261 >gi|159039803|ref|YP_001539056.1| tRNA pseudouridine synthase A [Salinispora arenicola CNS-205] gi|157918638|gb|ABW00066.1| tRNA pseudouridine synthase A [Salinispora arenicola CNS-205] Length = 276 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 116/254 (45%), Gaps = 14/254 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 R + + Y+G+ + GW Q + ++ G + +A LV G + AGRTD+GVHA Sbjct: 5 TRVRLDVSYDGTDFSGWAVQPDRRTVAGVLVQAFDLVLGSDAATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL+ E W + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHVDLLTEVWRRHEGTLLRRLARLLPGDVRVRAVTGVPGDFDARFSATFRRYEYRVT- 123 Query: 119 RQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 AP E R AW LD + + AA LVG HDF + A++ +R + Sbjct: 124 -DAPWGAEPLRRHDTLAW--SSRLDQDALNAAADGLVGEHDFAAYCRRKENATT-LREVT 179 Query: 174 HFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D S ++ V A +F +RS VG++ +VGDG+ + L ++R Sbjct: 180 RLDWRRSADGVLVATVQADAFCQAMVRSLVGAMLVVGDGRRPAGWPAGLLARRERANEVN 239 Query: 233 LAPPEGLYFDSVEY 246 +AP GL +V Y Sbjct: 240 VAPAHGLTLVAVGY 253 >gi|195375299|ref|XP_002046439.1| GJ12898 [Drosophila virilis] gi|194153597|gb|EDW68781.1| GJ12898 [Drosophila virilis] Length = 513 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 132/300 (44%), Gaps = 60/300 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F EI V + R Sbjct: 1 MRRYLLNIAYIGTNFRGIQKTVNKLEEARLDTNSVQGCLELALRVFRPKNEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L K + I +L+ V FH R+ Sbjct: 60 TDAGVHALHSTVHVDLERSDNKFYDTTTLTGVLNRTLDKQNLPIRVLSTQRVPDTFHCRY 119 Query: 106 SAIRRSYLYRI-----ITRQAPLA--LEKGRAWLIP------------KSLDCENMRIAA 146 AI R+YLYR+ +T+ + KG +P + D E ++ AA Sbjct: 120 HAIGRTYLYRVAVAKNVTQSNTINSLRNKGYESFVPVEEIDRCYFLQNNNFDIERLKNAA 179 Query: 147 QHLVGRHDFTTFRSIHCQASS-------PIRTIDHFDVNSFGNLI--------------- 184 + +G HDF +F S+ Q S +R ID ++ + +L Sbjct: 180 RMFLGVHDFRSFMSVSRQKSPSRDHPMFTVRKIDEINIRAGQSLALGPNATLASQIYDYW 239 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYF 241 +I + A+SFL+ Q+R VG+L + +G+ + + L + P +AP GLY Sbjct: 240 DIEIKAKSFLYKQVRRIVGTLLALANGRIDERCIYEMLTIPSKHTWEPRILVAPASGLYL 299 >gi|317125837|ref|YP_004099949.1| tRNA pseudouridine synthase A [Intrasporangium calvum DSM 43043] gi|315589925|gb|ADU49222.1| tRNA pseudouridine synthase A [Intrasporangium calvum DSM 43043] Length = 303 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 26/265 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R + + Y G+ + GW Q +++G + A+ V V + AGRTD+GVHA Sbjct: 20 VRLRLDLAYEGTAFSGWAAQPGLRTVEGELATAVTTVLRAPAPVSLTVAGRTDAGVHARG 79 Query: 60 QVAHFDLVREWVPVILCKA---------LNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 QV H D+ + + ++ + + + ++ + F ARFSA R Sbjct: 80 QVVHVDVEPAALAALPGRSNRTPEEALLRRLGGLLDPDVVVHRVARAPEGFDARFSAQER 139 Query: 111 SYLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 YLYR+ A PL W P+ LD E M AA+ LVG DF F + ++ Sbjct: 140 RYLYRLADADALRDPLRRHDTVWW--PRPLDAERMDEAARPLVGLRDFAAF-CKRREGAT 196 Query: 168 PIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKAL 222 +RT+ + G+ ++ V A +F H+ +RS VG+ VG+G+ W + ++ Sbjct: 197 TVRTLLEYRWVRLGDGVLAATVRADAFCHSMVRSLVGAAVAVGEGRRPTSWPAELQQRTQ 256 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 +A D + + P GL ++V Y Sbjct: 257 RAADVR----VMPAHGLSLEAVTYP 277 >gi|221230534|ref|YP_002503950.1| putative pseudouridylate synthase [Mycobacterium leprae Br4923] gi|4539110|emb|CAB39831.1| putative tRNA pseudouridine synthase A [Mycobacterium leprae] gi|13093610|emb|CAC30910.1| probable pseudouridylate synthase [Mycobacterium leprae] gi|219933641|emb|CAR72052.1| probable pseudouridylate synthase [Mycobacterium leprae Br4923] Length = 249 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 26/235 (11%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV------------PVILCKA 78 +++A V V + AGRTD+GVHA QVAH D+ + P L Sbjct: 2 LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFLPLL 61 Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI---PK 135 + + +L+++ F ARFSA+RR Y YR+ T AP ++ +A + P+ Sbjct: 62 RRLSRLLPVDVRVLDIACAPVGFDARFSALRRHYRYRLST--APYGVQPNQARYVTAWPR 119 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 LD ++M A++ L+G DF F H ++ IR + + + G LI + A +F Sbjct: 120 ELDLDSMSAASRDLLGLRDFAVF-CRHRHGATTIRELQRLEWSREGYLITAHITADAFCW 178 Query: 196 TQIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +RS +G+L VGD + W L KA ++ D AP GL F V+Y Sbjct: 179 SMVRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTT----APAHGLTFIRVDY 229 >gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT] gi|121692939|sp|A0B7V0|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT] Length = 267 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 112/250 (44%), Gaps = 30/250 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----AGRTDSGVHA 57 ++ + I Y G Y+G+QRQ +++ + A+ I V +G AGRTD GV A Sbjct: 1 MKIALKIAYLGDRYYGFQRQPGLRTVESVMRDALL----RIGVANGDFCYAGRTDRGVSA 56 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV F + + + + +N+ L SD + ++ F AR+SA+ R Y Y Sbjct: 57 LGQVIDFWIEEDRAYLAFPRVINSLLP-SDVWAWAR-AVAPVGFSARWSALWREYRY--- 111 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +L +D +R AA HLVG HDF R+ +R I DV Sbjct: 112 -------------FLFSPDIDLSAVREAAGHLVGTHDF---RNFSMSKVDTVRRIISIDV 155 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N+ ++ V A F+ +R VG+L+L+G G+ D L P APPE Sbjct: 156 NAHCGIVVFDVRAEGFIWNMVRRIVGALELIGIGE-KPVDWILELLDPSTPHGAPTAPPE 214 Query: 238 GLYFDSVEYS 247 GL V YS Sbjct: 215 GLMLMDVGYS 224 >gi|194864517|ref|XP_001970978.1| GG25359, isoform B [Drosophila erecta] gi|190652761|gb|EDV50004.1| GG25359, isoform B [Drosophila erecta] Length = 288 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 118/265 (44%), Gaps = 54/265 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALQVFHPTNEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL DL R + L LN L K I +L+ +VD FH R+ Sbjct: 60 TDAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQRLPIRVLSSQLVDNSFHCRY 119 Query: 106 SAIRRSYLYRI-ITRQAPLA----LEKGRAWLIP------------KSLDCENMRIAAQH 148 AI R+YLYR + + + L K IP S D ++ AA+ Sbjct: 120 DAIGRTYLYRFAVAKDSSLGDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVKAAARM 179 Query: 149 LVGRHDFTTFRSIHCQASS------PIRTIDHFDVN---------------SFGNLIEIR 187 +G HDF TF S+ Q S +R ID ++ N +I Sbjct: 180 FIGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIE 239 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGK 212 + A+SFL+ Q+R VG+L +G+G+ Sbjct: 240 IKAKSFLYKQVRRIVGALIALGNGR 264 >gi|238061092|ref|ZP_04605801.1| tRNA-pseudouridine synthase I [Micromonospora sp. ATCC 39149] gi|237882903|gb|EEP71731.1| tRNA-pseudouridine synthase I [Micromonospora sp. ATCC 39149] Length = 276 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 113/255 (44%), Gaps = 14/255 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q ++ G + + LV G V + AGRTD+GVHA Sbjct: 5 VRLRLTVAYDGTNFSGWAAQPARRTVAGVLTGTLDLVLGAGVATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPAAVWREHEGRLLRRLARLLPTDVRVRAMTEVPADFDARFSATFRRYEYRVT- 123 Query: 119 RQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 AP E R AW PK LD + AA LVG HDF + A++ +R + Sbjct: 124 -DAPFGAEPLRRHEVLAW--PKPLDPALLNAAAAGLVGEHDFAAYCRRKENATT-LREVT 179 Query: 174 HFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D G L+ V A +F +RS VG++ + GDG+ L ++R Sbjct: 180 RLDWRRDPGGLLVATVQADAFCQAMVRSLVGAMLVAGDGRRPVDWPGSLLTRRERSSEVT 239 Query: 233 LAPPEGLYFDSVEYS 247 +AP GL +V Y Sbjct: 240 VAPAHGLTLVAVGYP 254 >gi|194864515|ref|XP_001970977.1| GG25359, isoform A [Drosophila erecta] gi|190652760|gb|EDV50003.1| GG25359, isoform A [Drosophila erecta] Length = 499 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 118/265 (44%), Gaps = 54/265 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALQVFHPTNEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL DL R + L LN L K I +L+ +VD FH R+ Sbjct: 60 TDAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQRLPIRVLSSQLVDNSFHCRY 119 Query: 106 SAIRRSYLYRI-ITRQAPLA----LEKGRAWLIP------------KSLDCENMRIAAQH 148 AI R+YLYR + + + L K IP S D ++ AA+ Sbjct: 120 DAIGRTYLYRFAVAKDSSLGDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVKAAARM 179 Query: 149 LVGRHDFTTFRSIHCQASS------PIRTIDHFDVN---------------SFGNLIEIR 187 +G HDF TF S+ Q S +R ID ++ N +I Sbjct: 180 FIGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIE 239 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGK 212 + A+SFL+ Q+R VG+L +G+G+ Sbjct: 240 IKAKSFLYKQVRRIVGALIALGNGR 264 >gi|320094548|ref|ZP_08026315.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] gi|319978528|gb|EFW10104.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] Length = 218 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 11/194 (5%) Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL + A+ L R W + +SD + +L+ S V F ARFSA RSY+YRI Sbjct: 7 ALVRRANALLARAWAQREQGRGERPPRGVSDAL-VLSASPVSADFDARFSATGRSYVYRI 65 Query: 117 ITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R PL R W + LD + AA+ L+G HDF +F + ++ IR + Sbjct: 66 ADRPTPL-----RRWDCVWDDRPLDLAAVNRAAEALLGEHDFLSFCRPR-EGATTIRALT 119 Query: 174 HFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + V + L+E V A +F H+ +RS VG+L LVG G + L A+ R P Sbjct: 120 RLEAVRAPDGLVEFHVGADAFCHSMVRSLVGALALVGRGARPAPWPRALLDARSRASAAP 179 Query: 233 LAPPEGLYFDSVEY 246 +AP GL + V+Y Sbjct: 180 IAPARGLTLERVDY 193 >gi|332295380|ref|YP_004437303.1| tRNA pseudouridine synthase A [Thermodesulfobium narugense DSM 14796] gi|332178483|gb|AEE14172.1| tRNA pseudouridine synthase A [Thermodesulfobium narugense DSM 14796] Length = 283 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 6/241 (2%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 II Y+G+ + G+Q Q ++Q IE+ + + E V V AGRTD+GVHA+ QV F L Sbjct: 14 IISYDGTNFHGFQMQNQSRTVQLVIEQKLEKIFKERVCVVPAGRTDAGVHAIGQVISFRL 73 Query: 67 VREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + V L LN +L D I I + ++ F++RFSA R Y+Y I ++ A Sbjct: 74 AKCPFDVEKLQNILNYHL--PDDIRISEMRLMPADFNSRFSAKSRVYVYAISAKKDICAH 131 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 W + SL E+++ + R F +F + T+ F + + Sbjct: 132 LNRYFWNLDISL--EDLKATLNLIPNRFCFRSFSRVSKDRKLNFGTVTFSKCVVFEDFLY 189 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + A SFL +R G V GK T D ++AL+ + R APP+GL+ V Sbjct: 190 FIIEAPSFLWHTVRFLFGEAVAVAKGKRTLEDYKEALEGKKRLVLYK-APPKGLHLWGVS 248 Query: 246 Y 246 Y Sbjct: 249 Y 249 >gi|224438205|ref|ZP_03659140.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] gi|313144651|ref|ZP_07806844.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] gi|313129682|gb|EFR47299.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] Length = 245 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M RY +I Y+GS ++G+ QK+ S+ G+++ V GEI+ G RTD GVH+ Sbjct: 1 MPRYKAVISYDGSAFYGFALQKHKPSVLGALQDGFSRVGIRGEIL---GTSRTDKGVHST 57 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F+ L LNA K+ I++ L V++ FH RF A+ R+Y + +++ Sbjct: 58 GQVISFESRHFEDSHTLQNLLNA--KLYPHIAVRRLERVNEDFHPRFHALWRAYRF-LLS 114 Query: 119 RQAPLALEKGRAWLIPKSLDCENM-RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 AP + A++ + + + + A G+H+F F+ IR I Sbjct: 115 SHAPSPFQS--AYVSYEKIGNRALFQSALSMFKGKHNFALFKKNGSFTKDSIRDIFRIFS 172 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 L + + FL +Q+R VG+ V G+ + L++ +QA+ R P++ P Sbjct: 173 YQHKGLDIVYIKGNGFLRSQVRLMVGAALSVSRGELSLESLQEQIQAKKRHYNFPIS-PN 231 Query: 238 GLYFDSVEYS 247 GLY V YS Sbjct: 232 GLYLCGVGYS 241 >gi|119963259|ref|YP_948625.1| tRNA pseudouridine synthase A [Arthrobacter aurescens TC1] gi|119950118|gb|ABM09029.1| tRNA pseudouridine synthase A [Arthrobacter aurescens TC1] Length = 296 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 123/265 (46%), Gaps = 23/265 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW Q ++QGS+E+A+ L+ V V AGRTD+GVHA QV Sbjct: 17 LRVRLDLSYDGGPFSGWALQPGLRTVQGSLEEALALLLQRPVRVTVAGRTDAGVHARGQV 76 Query: 62 AHFDLVR-EWV----------PVILCKALNAYLK-----ISDTISILNLSIVDKQFHARF 105 H DL EW+ V L + L L ++ +I + + + + F ARF Sbjct: 77 VHLDLTEAEWLSLPRGHELDPAVALLRRLRGALSRILGDLTGSIEVHDAGLAPEGFDARF 136 Query: 106 SAIRRSYLYRII---TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 SA+ R Y YRI R P+ +G L+ E M A L+G DF ++ Sbjct: 137 SALWRRYSYRIADGPERWDPVL--RGITLWHKAPLNVELMNEGAFALLGLQDFRSYCKPR 194 Query: 163 CQASSPIRTIDHFDVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + ++ IR + F + ++I V A +F H +RS VGS VG+G T L Sbjct: 195 -EGATTIRELQQFSFDRGSDDVIVATVQADAFCHNMVRSLVGSALRVGEGLETPGWLHSR 253 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 L + R LA P L + V Y Sbjct: 254 LLERKRDAKSVLAAPHPLVLEEVAY 278 >gi|206895862|ref|YP_002247302.1| tRNA pseudouridine synthase A [Coprothermobacter proteolyticus DSM 5265] gi|238057727|sp|B5Y955|TRUA_COPPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206738479|gb|ACI17557.1| tRNA pseudouridine synthase A [Coprothermobacter proteolyticus DSM 5265] Length = 259 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 14/249 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++Y ++++ G+ Y G+QRQKNG++IQ +E + + VV +GRTD+GVHA Sbjct: 1 MVKYAGLLQFKGTNYAGFQRQKNGTAIQNVLESTLSQINNRATVVRYSGRTDAGVHAWGM 60 Query: 61 VAHF----DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY-R 115 F DL + IL + L +++ IS++ S +F + SA+ + YLY Sbjct: 61 PFVFWGREDLSADKWMFILNRMLPKDMRV---ISVVRTS---PEFDPQLSAVAKQYLYCA 114 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R PL + A+L S++ + AA+ LVG HDF F S R + Sbjct: 115 TQERLGPL-WDDFFAYLPNLSIETSAVISAARKLVGEHDFKGFSKKGSSVKSTRRKLYEV 173 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V + + V FL+ +R VG+L +G GK +++ L AP Sbjct: 174 SVMFTHSRMYFSFVGNGFLYGMVRLMVGTLLQIGWGKQDVNFIDEVLSGNAVANYS--AP 231 Query: 236 PEGLYFDSV 244 +GL+ V Sbjct: 232 AQGLHLVKV 240 >gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro] gi|121729516|sp|Q46CU8|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro] Length = 269 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 25/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHA 57 +R + + Y G+ + G Q Q N +++G + KA+ + + + AGRTD+GVHA Sbjct: 1 MRVALKLAYIGTEFHGSQIQPNVETVEGELFKALRNLGIIESPKSANYTCAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD + + + + + +N+ +++ I + + V F AR A+ R Y Y Sbjct: 61 LEQVVAFDTDK--LNLAIPRVINS--ELTPGIWVWAHAEVPLSFDARRDAVSRHYRYV-- 114 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + K D +R A++ L+G HDF F + + S+ +RTI+ D Sbjct: 115 --------------MSGKEYDISKIREASKFLLGTHDFENFSRTNGEKST-VRTIERIDA 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LI+I VV SFL +R V +L ++G G + L + L + +E AP Sbjct: 160 RIDGELIKIDVVGNSFLWNMVRKIVTALSMIGKGVRDTDWLLQMLNPEIYEEGIESAPAY 219 Query: 238 GLYFDSVEYS 247 GL V Y+ Sbjct: 220 GLTLLKVNYN 229 >gi|195135260|ref|XP_002012052.1| GI24889, isoform A [Drosophila mojavensis] gi|193918316|gb|EDW17183.1| GI24889, isoform A [Drosophila mojavensis] Length = 499 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 122/271 (45%), Gaps = 60/271 (22%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F EI V + R Sbjct: 1 MHRYLLNISYIGTRFRGIQKTINKLEESRVDTNSVQGCLELALRVFRPVNEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + IL LN L K S I +L+ V FH R+ Sbjct: 60 TDAGVHALHSTVHVDLERNDGKCYDTTILTGVLNRTLDKQSLPIRVLSTQRVADTFHCRY 119 Query: 106 SAIRRSYLYRI-ITRQAPLALEKGRA---------------------WLIPKSLDCENMR 143 AI R+YLYR+ +++Q L ++ +L + D E + Sbjct: 120 HAIGRTYLYRVAVSKQKTTVLPDAKSSSLRNRAFEAFLPVEEWDRCYFLQNNNFDIERLI 179 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSP-------IRTIDHFDVNSFGNLI------------ 184 A++ L+G HD+ TF S+ Q S +R ID ++ +L Sbjct: 180 AASRMLIGVHDYRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGRSLALGPNATLATENY 239 Query: 185 ---EIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +I + A+SFL+ Q+R VG+L + +G+ Sbjct: 240 DYWDIEIKAKSFLYKQVRRIVGTLLALAEGR 270 >gi|301117110|ref|XP_002906283.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] gi|262107632|gb|EEY65684.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] Length = 316 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 54/287 (18%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-------SIQGSIEKAIF--LVTGEIVVVHGAGRTDS 53 RYC+ I Y G+G+ GWQRQ+ + S+Q +E A+ L T + V V G RTD+ Sbjct: 18 RYCLHIAYYGTGFVGWQRQQQETKSSSGHDSVQEVVEAAVTETLGTSKRVNVTGVSRTDA 77 Query: 54 GVHALRQVAHFDLVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 G HAL Q L E +P+ L +N L I +++L ++ V +R + + Sbjct: 78 GTHALYQFGFIRLDSE-LPMTMDELKDRVNTKLDIG-RVAVLGVT-VPTTGPSRIRSRYK 134 Query: 111 SYLYRIITRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTF----------- 158 Y+Y + P LE G+ +W + + LD + +R A + L G HDF F Sbjct: 135 KYIYYLQQGHRP-DLELGKYSWFLGRRLDIQRIRDALKFLEGTHDFRPFSQGLQKPKFED 193 Query: 159 ---------------RSIHCQASSPI----RTIDHFDV-----NSFGNLIEIRVVARSFL 194 R+++ P+ ID D+ N+ + + I +VA FL Sbjct: 194 MTTLRTVMSAKVVARRNVNFSLDPPVSGSGEIIDAADMYREPGNTPVHFVCIELVANGFL 253 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +R +G+L+ +G+G ++ +++ L + + GP AP +GL+ Sbjct: 254 RHMVRRIIGTLRPIGEGTQPASRMQQVLAGE--VQPGPSAPTKGLWL 298 >gi|195490006|ref|XP_002092962.1| GE26463, isoform A [Drosophila yakuba] gi|194179063|gb|EDW92674.1| GE26463, isoform A [Drosophila yakuba] Length = 495 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 122/286 (42%), Gaps = 56/286 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +S+QG +E A +F EI V + R Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVFHPINEIQTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL DL R + L LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQGLPIRVLSSKLVSNSFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALE------KGRAWLIP------------KSLDCENMRIAAQ 147 AI R+YLYR + P +LE K IP S D ++ AA+ Sbjct: 120 HAIGRTYLYRFAVAKDP-SLEDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVQAAAR 178 Query: 148 HLVGRHDFTTFRSIHCQASS------PIRTIDHFDVN---------------SFGNLIEI 186 +G HDF TF S+ Q S +R ID ++ N +I Sbjct: 179 MFIGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDI 238 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + A+SFL+ Q+R VG+L +G+G+ L + L + P Sbjct: 239 EIKAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDP 284 >gi|13358100|ref|NP_078374.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761947|ref|YP_001752621.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508635|ref|ZP_02958135.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|26006901|sp|Q9PPV4|TRUA_UREPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030149|sp|B1AJH7|TRUA_UREP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|11269468|pir||B82879 pseudouridylate synthase I UU536 [imported] - Ureaplasma urealyticum gi|6899540|gb|AAF30949.1|AE002152_8 pseudouridylate synthase I [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827524|gb|ACA32786.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182676096|gb|EDT88001.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 241 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 16/251 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHAL 58 + Y + + Y+GS ++GW RQ ++QG +E K+IF + + + G+GRTD GVHA Sbjct: 1 MNYKISLRYDGSLFYGWARQPQKRTVQGDLEEIFKSIFKINN--IRIIGSGRTDKGVHAY 58 Query: 59 RQ---VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 Q V H L ++ I+ +AL + + S I IL + VD FHA+++A ++Y Y Sbjct: 59 EQTFSVKHSAL--KYDSHIIYQALCS--RTSSDIQILEVQKVDDSFHAQYNATSKTYQYV 114 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + L + + ++ + + A + VG HDF +F + + + IR I+ Sbjct: 115 INDYEFDL-FRNNYELFVNQKINDQKILEALELFVGEHDFKSFST--SELTMTIRRINWV 171 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +LI I + A FL +R V S K + + + L + LAP Sbjct: 172 KIKRDTHLI-IYINANGFLKNMVRMIVASCLDYAFNKISLAKIHELLIYPKKGASIKLAP 230 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 231 ACGLYLYKVYY 241 >gi|255609446|ref|XP_002539049.1| pseudouridylate synthase, putative [Ricinus communis] gi|223509026|gb|EEF23334.1| pseudouridylate synthase, putative [Ricinus communis] Length = 132 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/118 (47%), Positives = 72/118 (61%), Gaps = 12/118 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+G+ + GWQ Q N + +Q +IE AI V GE V +H AGRTDSGVHAL QV Sbjct: 16 MKIAIGIEYHGAYFQGWQSQPNAAGVQDAIEHAIKQVGGETVRLHAAGRTDSGVHALMQV 75 Query: 62 AHFD--LVR---EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 AHF+ +VR WV + NA+L + IL + V FHARFSA RSY Y Sbjct: 76 AHFETSVVRPLSAWV-----RGTNAHLPA--WVRILWATEVAADFHARFSARARSYQY 126 >gi|296187338|ref|ZP_06855733.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296047860|gb|EFG87299.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 141 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 72/137 (52%) Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 ++YLY I + + A+ + ++L+ MR AA+ L G HDF +F S+ S + Sbjct: 5 KTYLYTINNNKFRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTKSTV 64 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 RTI++ + +I I V SFL +R VG+L VG G +D+EK L + R E Sbjct: 65 RTINYISITEEHGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAE 124 Query: 230 CGPLAPPEGLYFDSVEY 246 GP+A +GL ++Y Sbjct: 125 AGPMAAAKGLCLKDIQY 141 >gi|322792295|gb|EFZ16279.1| hypothetical protein SINV_03177 [Solenopsis invicta] Length = 290 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 45/271 (16%) Query: 17 GWQRQ------KNGSSIQGSIEKAIFLVTGEIV---VVHGAGRTDSGVHALRQVAHFDLV 67 G QRQ ++ SIQG+IE A+ V+ + + V+ + RTD+GVHA AH +L Sbjct: 2 GLQRQSSDNFVRDTDSIQGAIETALLTVSPKSLIRPVLTLSSRTDAGVHAFGNTAHVELE 61 Query: 68 REWVPVI----LCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRI----IT 118 ++ + + K +N Y K I +L+ + + FHAR S R+YLYR I Sbjct: 62 NKYNTIYNSSDVKKYVNRYFAKCGHFIRLLDSTPITNDFHARHSCKSRTYLYRFMIPKIC 121 Query: 119 RQAPLALEKG------RAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIR 170 + ++L + RA+ D + R Q +G DFTTF +SI + +R Sbjct: 122 NEQRISLPETIHTHHLRAY----DFDIDKARRGIQLFMGTKDFTTFSAKSITSRKIQYVR 177 Query: 171 TIDHFDVNSFGNLIEIRVVA------------RSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + F + L+ ++ +SFL+ Q+R +G+L +G GK T D+ Sbjct: 178 ALHAFTLEEAQPLMPFDPLSNNFTYWHFTCKGKSFLYNQVRRMIGALIALGLGKITEKDI 237 Query: 219 EKALQAQDRKECGP---LAPPEGLYFDSVEY 246 LQ P PP GL+ +VEY Sbjct: 238 TVMLQVPSHHNWDPRVTPVPPNGLHLLNVEY 268 >gi|313682232|ref|YP_004059970.1| tRNA pseudouridine synthase a [Sulfuricurvum kujiense DSM 16994] gi|313155092|gb|ADR33770.1| tRNA pseudouridine synthase A [Sulfuricurvum kujiense DSM 16994] Length = 242 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 112/257 (43%), Gaps = 26/257 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVH---------GAGR 50 M R + + YNGS + G Q+Q N +++ G + I V+H +GR Sbjct: 1 MSRVKITLSYNGSAFMGSQQQPNTDNTVMGHL----------ITVLHRLKITATPKASGR 50 Query: 51 TDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GVHA QV H DL W + L + LN +++ ++ I + V+ FHAR+SA R Sbjct: 51 TDRGVHATHQVIHVDLPDFWTDLHRLREMLN--VQLPPSMRIQRIEFVEDDFHARYSAKR 108 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y Y +I E +P SL+ E + A VG HDF F+ Sbjct: 109 RVYRY-VIKEGLSNPFEDNFITFVP-SLNREAICDAIGCFVGTHDFEFFKKSGNDLEHHT 166 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R I S+ I FL +QIR VG L + GK T L + + R Sbjct: 167 RIIYRAYAYSYKGHFIIVFEGNGFLRSQIRLMVGFLLRISAGKATKEQLIEQINCVKRHT 226 Query: 230 CGPLAPPEGLYFDSVEY 246 +AP GLY ++Y Sbjct: 227 TD-IAPHNGLYLTHIKY 242 >gi|215737309|dbj|BAG96238.1| unnamed protein product [Oryza sativa Japonica Group] Length = 223 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 5/167 (2%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + I + +S +FHAR S + Y Y+I A+ L+ + MR Sbjct: 27 LPHEIRVREISAAKPEFHARTSTRSKIYHYKIYNGPVMDPFHNHYAYHSAYKLNSQAMRE 86 Query: 145 AAQHLVGRHDFTTF-RSIHC-QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 AA+H VG HDFT+F ++H + SPI+ I FDV G ++++ + FL+ Q+R+ V Sbjct: 87 AAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFDVIEMGAILQLEIEGTGFLYRQVRNMV 146 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEY 246 L VG + K + A+DRKE + APP GLY SV Y Sbjct: 147 ALLLQVGREALPPDIVAKIIAARDRKELAKVALSAPPHGLYLMSVNY 193 >gi|171920141|ref|ZP_02931545.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701850|ref|ZP_02971512.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902508|gb|EDT48797.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701145|gb|EDU19427.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 241 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 16/251 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHAL 58 + Y + + Y+GS ++GW RQ ++QG +E K+IF + + + G+GRTD GVHA Sbjct: 1 MNYKISLRYDGSLFYGWARQPQKRTVQGDLEEIFKSIFKINN--IRIIGSGRTDKGVHAY 58 Query: 59 RQ---VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 Q V H L ++ I+ +AL + + S I IL + VD FHA+++A ++Y Y Sbjct: 59 EQIFSVKHSAL--KYDSHIIYQALCS--RTSSDIQILEVQKVDDSFHAQYNATSKTYQYV 114 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + L + + ++ + + A + VG HDF +F + + + IR I+ Sbjct: 115 INDYEFDL-FRNNYELFVNQKINDQKILEALELFVGEHDFKSFST--SELTMTIRRINWV 171 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + LI I + A FL +R V S K + + + L + LAP Sbjct: 172 KIKRDTRLI-IYINANGFLKNMVRMIVASCLDYAFNKISLAKIHELLIYPKKGASIKLAP 230 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 231 ACGLYLYKVYY 241 >gi|145219589|ref|YP_001130298.1| tRNA pseudouridine synthase A [Prosthecochloris vibrioformis DSM 265] gi|238685549|sp|A4SE87|TRUA_PROVI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145205753|gb|ABP36796.1| tRNA pseudouridine synthase A [Chlorobium phaeovibrioides DSM 265] Length = 243 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 95/206 (46%), Gaps = 5/206 (2%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 +EY+G+ + GWQRQ NG ++QG IE + + E + + AGRTD GVHA QV +F Sbjct: 8 VEYDGTSFAGWQRQPNGIVTVQGEIEAVLSEILQEKINLAAAGRTDRGVHARGQVVNFST 67 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + +LN L S I I + +V FHARFSA+ R Y Y I P AL Sbjct: 68 RSPLEHSRIRHSLNCLLPSS--ICIPSSQLVPDDFHARFSALERQYRYFAIPE--PSALM 123 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 +D M+ + L G HDF+ F + + T+ ++ Sbjct: 124 GRYTGCSHGDVDFALMQHLSSGLRGTHDFSLFSREDRDGNGSLCTVREAGWYRHKGVMVF 183 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGK 212 + A FL + +R VG + G G+ Sbjct: 184 HIAANRFLRSMVRGIVGGMLSAGRGE 209 >gi|327401434|ref|YP_004342273.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6] gi|327316942|gb|AEA47558.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6] Length = 290 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHAL 58 +R + + Y G+ + G+Q Q + +++G + KA F G V AGRTD+GVHA Sbjct: 25 MRVALKLAYIGTDFAGFQYQPDERTVEGELFKA-FESLGINVKASNYKCAGRTDAGVHAF 83 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV D+ +L + +NA + D I + + V F+ R+ A R+Y+Y + + Sbjct: 84 SQVVALDVSD--AKKVLPRVINA--NLPDDIVVWAWAKVPDDFNPRY-ATSRTYIYVLYS 138 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R+ D MR AA+ L+G HDFT F + S +RTI + ++ Sbjct: 139 RE----------------YDISAMRKAAKLLLGTHDFTNFTKKFGEGQSCVRTIYNVELR 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + +F +R + +L+ VG + E+ L + +E AP G Sbjct: 183 VNGDFLIFEIEGNAFTWNMVRCIIAALEAVGSRHRSVEWFEEMLNPEKHRERIEPAPAYG 242 Query: 239 LYFDSVEYS 247 L ++YS Sbjct: 243 LILKDIKYS 251 >gi|34557089|ref|NP_906904.1| tRNA pseudouridine synthase A [Wolinella succinogenes DSM 1740] gi|34482804|emb|CAE09804.1| TRNA PSEUDOURIDINE SYNTHASE [Wolinella succinogenes] Length = 267 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 15/245 (6%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 +EY+GS +FG Q QK S+ ++++ + G V +GRTD GVHA RQ F++ Sbjct: 21 FLEYDGSAFFGSQIQKEEPSVALALQRGL-KSMGIASKVRFSGRTDRGVHATRQAVSFEV 79 Query: 67 VRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + L K L YL++ L + + RF A R+Y R + + Sbjct: 80 PYKKSDWGYFKEELNKKLFPYLRVR------RLYPIREGLDPRFEAKSRAY--RYLLSEE 131 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 PL+ R D ++ A + LVG HDF F+ Q S +R + + + Sbjct: 132 PLSAFASRYVTHAHLGDERKIQEAMKLLVGWHDFALFKKSGSQEKSTLREMRRCWLYRYR 191 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + A FL QIR VG+L VG G+ + + ++ L+A+ R C APP GLY Sbjct: 192 SYWVFYFEANGFLRLQIRLLVGALLKVGRGEMSLEEFKEQLEAKRRFFCEG-APPYGLYL 250 Query: 242 DSVEY 246 V + Sbjct: 251 CKVSF 255 >gi|308235466|ref|ZP_07666203.1| tRNA pseudouridine synthase A [Gardnerella vaginalis ATCC 14018] Length = 173 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 27/177 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG-----------AGR 50 +R + + Y+G ++GW RQ N ++QG++E A++ +++ VH AGR Sbjct: 1 MRLRLDLAYDGGDFYGWARQPNLRTVQGTLEDALY----KVLRVHDGDSCFPLRLTVAGR 56 Query: 51 TDSGVHALRQVAHFDLVREWVP-------VILCKALNAYLK--ISDTISILNLSIVDKQF 101 TD+GVHA QV H D+ + + + KAL L+ + ISI ++SI F Sbjct: 57 TDTGVHASYQVCHLDVEDDILQNCVGHTNLTPVKALEYRLRGVLPKDISIHSVSIAPSGF 116 Query: 102 HARFSAIRRSYLYRI---ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 ARFSA+ R+Y+YRI R+ +G I LD +M AAQ +VG HDF Sbjct: 117 DARFSALDRTYVYRISDAANRENLDPRMRGFVLQIDYDLDVNSMNQAAQMIVGLHDF 173 >gi|42559739|sp|Q7M9U3|TRUA_WOLSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 253 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 113/246 (45%), Gaps = 15/246 (6%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 +EY+GS +FG Q QK S+ ++++ + G V +GRTD GVHA RQ F++ Sbjct: 7 FLEYDGSAFFGSQIQKEEPSVALALQRGL-KSMGIASKVRFSGRTDRGVHATRQAVSFEV 65 Query: 67 VRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + L K L YL++ L + + RF A R+Y R + + Sbjct: 66 PYKKSDWGYFKEELNKKLFPYLRVR------RLYPIREGLDPRFEAKSRAY--RYLLSEE 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 PL+ R D ++ A + LVG HDF F+ Q S +R + + + Sbjct: 118 PLSAFASRYVTHAHLGDERKIQEAMKLLVGWHDFALFKKSGSQEKSTLREMRRCWLYRYR 177 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + A FL QIR VG+L VG G+ + + ++ L+A+ R C APP GLY Sbjct: 178 SYWVFYFEANGFLRLQIRLLVGALLKVGRGEMSLEEFKEQLEAKRRFFCEG-APPYGLYL 236 Query: 242 DSVEYS 247 V + Sbjct: 237 CKVSFE 242 >gi|195336235|ref|XP_002034747.1| GM14299 [Drosophila sechellia] gi|194127840|gb|EDW49883.1| GM14299 [Drosophila sechellia] Length = 499 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 119/265 (44%), Gaps = 54/265 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +SIQG +E A +F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLERSRLDTNSIQGCLELALQVFHPTNEIHTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVR----EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL DL R + IL LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTVQVDLERTNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRY 119 Query: 106 SAIRRSYLYRI-ITRQAPLA---------------LEKGRAWLI-PKSLDCENMRIAAQH 148 A R+YLYR + + PL E R + + S D + ++ A++ Sbjct: 120 DATGRTYLYRFAVAKDPPLGDCSLRNRSFETFIPIEEIDRCYFLQSSSFDIKRVQAASRM 179 Query: 149 LVGRHDFTTFRSIHCQASS------PIRTIDHFDVN---------------SFGNLIEIR 187 +G HDF TF S+ Q S +R ID ++ N +I Sbjct: 180 FIGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSNAILAAETYNYWDIE 239 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGK 212 + A+SFL+ Q+R VG+L +G+G+ Sbjct: 240 IRAKSFLYKQVRRIVGALIALGNGR 264 >gi|195586672|ref|XP_002083097.1| GD13536 [Drosophila simulans] gi|194195106|gb|EDX08682.1| GD13536 [Drosophila simulans] Length = 499 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 119/265 (44%), Gaps = 54/265 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +SIQG +E A +F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSIQGCLELALQVFHPTNEIHTVLSS-R 59 Query: 51 TDSGVHALRQVAHFDLVR----EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL DL R + IL LN L K I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTVQVDLERTNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRY 119 Query: 106 SAIRRSYLYRI-ITRQAPLA---------------LEKGRAWLI-PKSLDCENMRIAAQH 148 A R+YLYR + + PL E R + + S D + ++ A++ Sbjct: 120 DATGRTYLYRFAVAKDPPLGDCSLRNRSFETFIPVEEIDRCYFLQSSSFDIKRVQAASRM 179 Query: 149 LVGRHDFTTFRSIHCQASS------PIRTIDHFDVN---------------SFGNLIEIR 187 +G HDF TF S+ Q S +R ID ++ N +I Sbjct: 180 FIGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSNAILAAETYNYWDIE 239 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGK 212 + A+SFL+ Q+R VG+L +G+G+ Sbjct: 240 IRAKSFLYKQVRRIVGALIALGNGR 264 >gi|224102643|ref|XP_002312761.1| predicted protein [Populus trichocarpa] gi|222852581|gb|EEE90128.1| predicted protein [Populus trichocarpa] Length = 232 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 8/177 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVH--GAGRTDSGVHAL 58 ++ ++I Y+G+ Y GWQ Q+ +IQ +EKA+ T E +H GA RTD GVHA Sbjct: 57 FKWRLLISYDGTHYKGWQFQQTPPTIQCILEKALTRATKLERKDLHLVGASRTDGGVHAW 116 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + + + ALN L I + +S V +FHARFSA ++Y Y+I Sbjct: 117 GQVAHFVTPFNYDSLDSIHAALNGLLPPD--IRVREISAVVPEFHARFSAKGKTYHYKIF 174 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTI 172 ++ A+ + L+ MR AA H +G DF+ F S + +P++TI Sbjct: 175 NDTVMDPFQRLYAYHVTHKLNAAVMREAANHFIGTRDFSAFVNSSRNDGVPNPVKTI 231 >gi|91773587|ref|YP_566279.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242] gi|121691685|sp|Q12VJ7|TRUA_METBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91712602|gb|ABE52529.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242] Length = 275 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 33/253 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH--------GAGRTDS 53 +R + I Y GS + G Q Q N +++G + F V E+ ++ +GRTDS Sbjct: 1 MRVALKIAYIGSNFHGSQVQLNDPTVEGEL----FKVLKELGIMEDPRTANFISSGRTDS 56 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA+ QV FD + + + + +N+ K+ TI +IV + F R A+ RSY Sbjct: 57 GVHAMGQVVAFDT--DAPNLAMPRVINS--KLPGTIWAWAHAIVPENFDPRRHALSRSYR 112 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + Q D +R A++ L+G HDF+ F S + +R + Sbjct: 113 YILYGEQ----------------FDISKIRSASKLLLGSHDFSNF-STSRGSKKTVRIVK 155 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 D+ GNL I V A SFL +R V +L +VG G L L + +E Sbjct: 156 RIDIRVSGNLTRIDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLDPESYEEGLEP 215 Query: 234 APPEGLYFDSVEY 246 A GL V Y Sbjct: 216 AHGYGLVLMDVNY 228 >gi|261338249|ref|ZP_05966133.1| tRNA pseudouridine synthase A [Bifidobacterium gallicum DSM 20093] gi|270276903|gb|EFA22757.1| tRNA pseudouridine synthase A [Bifidobacterium gallicum DSM 20093] Length = 313 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 128/290 (44%), Gaps = 51/290 (17%) Query: 1 MIRYCMIIEYNGSGYFGW--QRQKNGSSIQGSIEKAI--FLVTGE----IVVVHGAGRTD 52 M+R + + Y+G + GW Q Q N ++QG IE+A+ L G + + AGRTD Sbjct: 1 MVRLRIDLAYDGFSFNGWAVQPQSNIRTVQGEIEQALARLLHDGNEPDYVPRLTVAGRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVIL-------CKALNAYLK--ISDTISILNLSIVDKQFHA 103 +GVHA QV H D+ + + KAL L + D I+I +S + F A Sbjct: 61 AGVHASHQVCHLDVTEPMLDACVGHMRVEPVKALETRLSRMMPDDIAIHRVSFAPEGFDA 120 Query: 104 RFSAIRRSYLYRI---ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 RFSA+ R+Y+YRI T P L W L+ + M AA +G HDF +F + Sbjct: 121 RFSALERTYVYRISDAATDYDPRQLSY--VWHTDHLLNMDAMNEAAALTLGLHDFGSFAT 178 Query: 161 IHCQASSPIRTID----------HFDVNSFGN----------LIEIRVVARSFLHTQIRS 200 + ++ IR + N G L+ +VA +F +RS Sbjct: 179 PNPGGTT-IREVKTAYWSRIPTRPLIANPMGERYHTPAIESGLLCFTIVADAFARNMVRS 237 Query: 201 FVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V + VG GK W + + L+ GP+A P+GL + V Y Sbjct: 238 LVNACVQVGLGKRDVAWFAHKMAVPLR---EGSTGPIA-PQGLTLEHVAY 283 >gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303] gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303] Length = 277 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 25/248 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHAL 58 R + + Y G+ Y G Q Q +I+G + K++ + + +GRTD+GVH+L Sbjct: 4 RMALKLAYIGTEYHGSQVQPELPTIEGELFKSLKNLEIIDDPKSANFVSSGRTDTGVHSL 63 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV FD + V + +N+ ++ ++I ++V +F+ R A R YLY Sbjct: 64 GQVVTFDTDNPRLAV--PRVINS--QLPESIWAWAYAVVPDEFNPRHGAFSRRYLY---- 115 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + G + D +R A+++L+G HDF F + S +RT+ ++ Sbjct: 116 ------IMSGEEY------DISRIRTASKYLIGTHDFANF-CTPVKGKSTVRTVQRINIR 162 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L I + A SFL +R V +L +VG G + LE+ L + +E AP G Sbjct: 163 VKGTLTLIDIQADSFLWKMVRKIVTALMMVGYGTRDTEWLEQMLNPEYYEEGIEPAPSYG 222 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 223 LILKDVDY 230 >gi|153840131|ref|ZP_01992798.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] gi|149746249|gb|EDM57337.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] Length = 142 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 67/111 (60%) Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G+ + I + A +F+H Sbjct: 11 ELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHGDYVVIDIKANAFVH 70 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R+ GSL VG G+ ++ L+A+DRK G A EGLY V+Y Sbjct: 71 HMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYLVDVDY 121 >gi|119504507|ref|ZP_01626586.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2080] gi|119459529|gb|EAW40625.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2080] Length = 226 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 64/108 (59%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 C M A+Q L+G HDF+ FR+ CQA+ P+R I VN G+ + + + A +FL+ + Sbjct: 99 CIAMHNASQILLGEHDFSAFRAAQCQAAHPVRQIFGVSVNRVGDFVILDIEANAFLYHMV 158 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R+ VGSL++VG G+ +E+ L+ +DR G A GLY S+ Y Sbjct: 159 RNLVGSLQMVGSGQRPPEWIEQLLEGKDRTLGGDTASASGLYLQSITY 206 >gi|328702786|ref|XP_003242010.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Acyrthosiphon pisum] Length = 358 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 125/286 (43%), Gaps = 42/286 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDS 53 RY + Y G+ + G QRQ + SS+QG +E A+ L +H + RTD Sbjct: 5 RYLLYFSYIGTRFRGVQRQLTYDMVHNDDPSSVQGLLEYALKQLQPLNTPKLHLSSRTDQ 64 Query: 54 GVHALRQVAHFDLVREWV--PVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRR 110 GVH+ + AH DL + P L +N +L + I +++ IV F+AR A R Sbjct: 65 GVHSFKSSAHLDLELPYTCHPNKLVFQVNNFLSSCEVPIKLVSAQIVPNDFNARSCAKWR 124 Query: 111 SYLYRIITRQA------------PLAL-EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFT 156 YLYR+ ++ P+ + E R + I KS D E ++ +G D+ Sbjct: 125 KYLYRLAVVKSEFKDLYAERFVFPIPITEDKRCYFIQKSDFDVELVKNVLPLFIGTKDYK 184 Query: 157 TF---RSIHCQASS----------PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 TF ++ + S+ P R+ D++ + N +IRV ARSFL+ QIR VG Sbjct: 185 TFMGKSGLNTELSTIRTWNNIEIVPGRSFYPTDIDKYYNYWDIRVNARSFLYKQIRRTVG 244 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 L V T D++ P AP GLY + Y Sbjct: 245 VLIKVAQNIITYDDVKYMFDNPSINSWNPKISTAPSYGLYLYDIGY 290 >gi|269925860|ref|YP_003322483.1| tRNA pseudouridine synthase A [Thermobaculum terrenum ATCC BAA-798] gi|269789520|gb|ACZ41661.1| tRNA pseudouridine synthase A [Thermobaculum terrenum ATCC BAA-798] Length = 240 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 112/249 (44%), Gaps = 15/249 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G + G Q Q ++Q +E A VTG AGRTD+GV AL Q Sbjct: 1 MSTWKLVISYKGEYFSGSQIQPGKRTVQEELENAWEKVTGSRCRAVLAGRTDAGVSALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA P L + L YL + I I + V F AR SAI R Y Y + ++ Sbjct: 61 VATIKADWPGTPEELLEKLRKYL--TQGIEIRKVERVSDNFDARKSAIWRRYRY-VFSKD 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDV-- 177 E R I E+MR AA+ LVG DF F S +R I +V Sbjct: 118 -----EIARFGFI----SVESMRQAARALVGEKDFAAFASQSELGPRGTVRRILDINVIW 168 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + I +VA +FL +R V +L VG GK +L +A++ + R+ AP + Sbjct: 169 DKAANNLCIEIVADAFLRQMVRRIVSALIWVGTGKIEVVELLRAVEIKARQLLPGPAPAK 228 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 229 NLTLVEVGY 237 >gi|147919589|ref|YP_686671.1| tRNA pseudouridine synthase A [uncultured methanogenic archaeon RC-I] gi|121687867|sp|Q0W2P8|TRUA_UNCMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110622067|emb|CAJ37345.1| tRNA pseudouridine synthase [uncultured methanogenic archaeon RC-I] Length = 266 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 26/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---VHGAGRTDSGVHAL 58 ++ + I Y G+ ++G Q Q +++ + KA+ G I + + AGRTD+GVHAL Sbjct: 1 MKTALKIAYVGTNFYGSQAQPGLPTVESELRKAL-EEAGAIKLGTKIAMAGRTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F+ + + +N+ K+ + + V F R A R Y Y + Sbjct: 60 GQVVAFEQADP--KLTAPRIINS--KLPKDLWAYARAEVPDDFDPRRHATSREYRYILY- 114 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 AP +E+ ++ + +G HDFT F S+ P+RT+ D+ Sbjct: 115 --APDVIER-------------RLKECSSRFLGTHDFTNFSSVEA-GKYPVRTVTRLDIA 158 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + A SFL +R V +L+LVG+ K +EK + R E P A P G Sbjct: 159 KRGDFYIIDIEADSFLWNMVRKIVTALRLVGENKRPDGWIEKMFDPEYR-EGIPPAAPGG 217 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 218 LYLSRVNYD 226 >gi|50364970|ref|YP_053395.1| tRNA pseudouridine synthase A [Mesoplasma florum L1] gi|62901303|sp|Q6F1W2|TRUA_MESFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50363526|gb|AAT75511.1| tRNA pseudouridine synthase I [Mesoplasma florum L1] Length = 251 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 120/252 (47%), Gaps = 13/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALR 59 M ++ + +EY+GS + GW Q S+IQG + KAI VT V GA +TD+GVHA+ Sbjct: 1 MFKFLITLEYDGSDFHGWIEQPKTSTIQGELNKAINRVTKNAVFKTIGASKTDTGVHAID 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q DL + KA+N L +TI + ++ V + F+ R + + Y Y I + Sbjct: 61 QKVLLDLGFNPKLDLFKKAINKAL--PETIKVRSIEEVKQDFNIR-DVLYKEYSYTINDK 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-----RSIHCQASSPIRTIDH 174 + + + + +D + ++ +G H+F F + + + IR I+ Sbjct: 118 EYNILSNRFELNWDFEEIDIDKLQNIFNLFIGEHEFKLFSGLNHKELDSNKITTIREIES 177 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGS-LKLVGDGKWTSTDLEKALQAQDRKECGPL 233 DV + + I A+ F+ QIR V S L + K ++ ++++ LQ + K P Sbjct: 178 IDVKRALDKVVITFKAKGFIRYQIRMIVQSALNCYLNKKISADEIKEKLQGKGNK--PPF 235 Query: 234 -APPEGLYFDSV 244 AP +GL + + Sbjct: 236 NAPAKGLKLNKI 247 >gi|119477629|ref|ZP_01617779.1| hypothetical protein GP2143_09210 [marine gamma proteobacterium HTCC2143] gi|119449132|gb|EAW30372.1| hypothetical protein GP2143_09210 [marine gamma proteobacterium HTCC2143] Length = 261 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 19/253 (7%) Query: 6 MIIEYNGSGYFGWQRQKNGS------SIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 + I Y G+ YFGWQ Q + +I+G+I KA+ ++ + + A RTD GVHA Sbjct: 6 VTIAYKGTHYFGWQAQSKDTLKEEYPTIEGTILKALKKMSNYQHCTISAASRTDGGVHAQ 65 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 Q+A L + L LN+ L + I IL + K F S++ + Y Y Sbjct: 66 GQLAKISLSIDISADHLLLGLNSALPLD--IRILECASSTKNFQPNVSSVSKEYHYYFTA 123 Query: 118 TRQAPLALEKGRAWLIPKS---LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 ++ +A+ + L +D +R A Q VGRHDF F +S +R I + Sbjct: 124 SKTDNVAISEISLRLSTHDDGPIDMALLRTACQLFVGRHDFYNFSVRDLNNASSVRQISY 183 Query: 175 FDV--NSFGNLIE----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 D+ +F L++ ++++ FL IR +G+L +G G+ T D+ LQ Q Sbjct: 184 CDILQANFSPLVDEVYYLKIIGDGFLKYMIRYVMGALIELGKGRITLEDIAFYLQHQQDD 243 Query: 229 ECGPLAPPEGLYF 241 + A +GL+ Sbjct: 244 KLSAKAKAKGLHL 256 >gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon] Length = 275 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 28/251 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVH 56 R + I Y G+ Y G+Q Q +++G + KA+ L + AGRTD GVH Sbjct: 7 RVALKIGYLGTNYHGFQIQPQAELQTVEGELFKALKRLGILEDRKTANYSYAGRTDKGVH 66 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV FD + + + + + + + I L ++ F+AR AIRR Y Y + Sbjct: 67 ALAQVVSFDTLNQNMTPRMINTM-----LPNDIWALAIAKPHAGFNARKEAIRREYRYFL 121 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHF 175 + LD MR A++ L+G HDF+ F + + S I+ I Sbjct: 122 ---------------FLQTELDISRMRDASELLIGAHDFSNFSQRDGLEGKSLIKEIKQV 166 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ I I + A FL +R V +L +VG GK + ++ L + +++ P AP Sbjct: 167 NIVKSDLFIIIDIAASGFLRKMVREIVSALSMVGSGKRAKSWIQDLLDLKIKEQIEP-AP 225 Query: 236 PEGLYFDSVEY 246 GL V Y Sbjct: 226 AFGLVLKDVSY 236 >gi|74191686|dbj|BAE30412.1| unnamed protein product [Mus musculus] Length = 280 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 110/249 (44%), Gaps = 52/249 (20%) Query: 48 AGRTDSGVHALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 + RTD+GVHAL AH D+ R + P ++ KALN +LK I +L V FH Sbjct: 27 SSRTDAGVHALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLK-HPAIRVLKAFRVPNDFH 85 Query: 103 ARFSAIRRSYLYRIIT-----RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFT 156 AR +A R+Y YR+ T Q P+ E+ W L + LD M+ AAQHL+G HDF+ Sbjct: 86 ARHAATSRTYQYRLATGCSWPNQLPV-FEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFS 144 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFG-------------NLIEIRVVARSFL--------- 194 F+S ++ +RT+ V+ + ++SFL Sbjct: 145 AFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVGCLNP 204 Query: 195 -------HT--------QIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPE 237 HT Q+R L VG G T ++ L++QD K +AP Sbjct: 205 HRMGSGRHTCDNLSSLLQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAR 264 Query: 238 GLYFDSVEY 246 GL+ SV Y Sbjct: 265 GLFLKSVLY 273 >gi|78777192|ref|YP_393507.1| pseudouridylate synthase [Sulfurimonas denitrificans DSM 1251] gi|78497732|gb|ABB44272.1| Pseudouridylate synthase [Sulfurimonas denitrificans DSM 1251] Length = 236 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 112/247 (45%), Gaps = 13/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R +II YNG+ + G Q QK ++I G++E A+ + E +V +GRTD GVHA Q Sbjct: 1 MRCALIIAYNGTNFLGSQTQKESKNTILGTLEIALKKINIETKIV-ASGRTDRGVHASGQ 59 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL W + L +L L S I I + IVD FHAR+SA RR Y Y II + Sbjct: 60 VCHIDLPPYWSDITKLQDSLGRVLPPS--ILIKKIKIVDDTFHARYSAKRRVYRY-IIKK 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 E+ I + D ++ + G DF F S R I Sbjct: 117 AKSNPFEENFVTFIDDT-DFFEIQKNIKLFCGAFDFKFFMKSGGDIKSTTRVIYRAFAYE 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I + A FL +QIR VG+L + + ++ L+ + + P A GL Sbjct: 176 HKGFIVLNFEANGFLRSQIRLMVGALLSLNED-----EILDKLECRVNHKIKP-AKSNGL 229 Query: 240 YFDSVEY 246 Y ++Y Sbjct: 230 YLSKIKY 236 >gi|307110841|gb|EFN59076.1| hypothetical protein CHLNCDRAFT_19189 [Chlorella variabilis] Length = 300 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 20/239 (8%) Query: 4 YCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSG 54 Y +++Y+G+ Y+G+Q Q + ++Q +E+A+ TG+ + V AGRTD+G Sbjct: 4 YAAVLQYDGTAYWGFQLQPAPQGRRAKPTVQLRVEQALCRATGQGRQALRVQAAGRTDAG 63 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV F R L +ALNA + I + + V ++ R+ A R++Y Y Sbjct: 64 VHARGQVVQFCCARRQGAAPLLRALNALM--PPDIRAVAVQEVPLDWNVRY-ASRKTYAY 120 Query: 115 RIITRQAPLALEKGRAWLI----PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SP 168 + P+A W P+ L + M AA VG HDF+ F ++ A+ SP Sbjct: 121 DLHLD--PVADPFLHRWRCHPRRPERLRLDAMADAAALFVGTHDFSRFANLGPDATRKSP 178 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 ++T+ + + + V FL+ Q+R G+L VG G + D+ AL +R Sbjct: 179 VKTVLSYRLLPLEGGARLEVTGTGFLYKQVRHMTGALLAVGGGSLGADDIAAALAGGER 237 >gi|240103716|ref|YP_002960025.1| tRNA pseudouridine synthase A [Thermococcus gammatolerans EJ3] gi|259550472|sp|C5A7E9|TRUA_THEGJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239911270|gb|ACS34161.1| tRNA-pseudouridine synthase A (truA) [Thermococcus gammatolerans EJ3] Length = 267 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 38/256 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEIVVVHGAGRTDSGVHA 57 ++ + I Y+G+ ++G+QRQ +++G + K + + E GA RTD GV A Sbjct: 1 MKLALRIAYDGTAFYGFQRQPGIRTVEGELINVLTKLKIIESPEKNDFKGASRTDRGVSA 60 Query: 58 LRQVAHF------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V F DL R P +L L+ + +L ++ V FH RF AI ++ Sbjct: 61 FFNVVSFVPGERADLAR---PEVLNHNLH-------DLWVLGVAEVPDDFHPRFWAISKT 110 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y Y +LI + + E M A+ GRHDF+ F + P+R Sbjct: 111 YRY----------------YLIDEGFELEKMVGCAKLFEGRHDFSAFARLE-PGRDPVRE 153 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I H + I + +SFL +R V +L+ G ++ L K+ Sbjct: 154 ITHISITPRHGYYVIEITGKSFLWEMVRRIVNALRFCGLSLLEPEEVGAMLSGVYEKKVP 213 Query: 232 PLAPPEGLYFDSVEYS 247 P APPE L +EY Sbjct: 214 P-APPENLILWHIEYP 228 >gi|194246764|ref|YP_002004403.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma mali] gi|254764860|sp|B3R022|TRUA_PHYMT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193807121|emb|CAP18559.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma mali] Length = 244 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 6/244 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y +++ Y+G+ Y+G+Q+Q + ++IQ +E + + + + ++GA RTD GVHA QV Sbjct: 6 YKLVLSYDGTNYYGFQKQLHLNTIQSVLENVLNKITKQKKIKIYGASRTDKGVHASGQVV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF L K LN L I I + ++ K+FH RF A +S +Y + + Sbjct: 66 HFQLPFLIPNDHFQKILNFCL--PSDIQITKIILISKEFHCRFQA--KSKIYHYVFSKKK 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + R + ++D ++ A + G+HDF+ F S + R I + Sbjct: 122 LNVFNYRFQVYIPNMDFNKIKEAILFIEGKHDFSLFTS-QKSLKNYQRIIFKAFIKETKQ 180 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + SF+ IR VG L + K T ++ ++ L + ++ LAP +GL Sbjct: 181 KYFLIIHGNSFIQHMIRFLVGFLIEIAQNKKTLSEFKQMLDLKINQKARLLAPAKGLILK 240 Query: 243 SVEY 246 + Y Sbjct: 241 KIFY 244 >gi|86139957|ref|ZP_01058522.1| tRNA pseudouridine synthase [Roseobacter sp. MED193] gi|85823375|gb|EAQ43585.1| tRNA pseudouridine synthase [Roseobacter sp. MED193] Length = 113 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 4/99 (4%) Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI--EIR--V 188 +P L MR A+HL+G++ FTTFRS CQA SP++ +D ++ L E+R + Sbjct: 7 VPPELYVAAMRNGARHLLGKYYFTTFRSRICQAKSPVKALDALEIEEVEGLAGPELRFHL 66 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 ARS L+ Q+RS VG+L+ VG G WT D++ AL+ +DR Sbjct: 67 SARSLLYNQVRSIVGTLERVGAGSWTPEDVKTALETRDR 105 >gi|126654438|ref|ZP_01726177.1| pseudouridylate synthase I [Bacillus sp. B14905] gi|126589112|gb|EAZ83311.1| pseudouridylate synthase I [Bacillus sp. B14905] Length = 214 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 8/213 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q IE+ + ++ E V V +GRTD+ VHA Sbjct: 1 MRRLKVIISYDGTLFSGYQVQPGERTVQAEIERVLAIMHKEEKVKVTASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN +++ I ++++ V+ FHAR+S + Y Y I Sbjct: 61 QTLHFDTPLAIPADKYRKALN--VQLPRDIRVMSVEEVEHDFHARYSVTGKRYRY--IWS 116 Query: 120 QAPLALEKGRAWLIPKS---LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P+ R + + + D M+ AAQ ++G HDF+ F + + +RT+ Sbjct: 117 CEPIQNPFRRHYTVETNGVKPDVVAMQKAAQAIIGTHDFSCFCASNTSVQDKVRTVTSLQ 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 G + + + FL+ +R G+L VG Sbjct: 177 FEWHGEELHMVIEGSGFLYNMVRIIAGTLWEVG 209 >gi|197294307|ref|YP_001798848.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma australiense] gi|171853634|emb|CAM11505.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma australiense] Length = 245 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y G+Q+Q +IQ ++E A+ +T + A RTD GVHA Q H Sbjct: 8 YKLILSYDGTCYCGYQKQPQTKTIQQTLENALKSMTKRQINTFAASRTDKGVHAQEQTIH 67 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F LN L I + + D FHAR+ A +S +Y I + PL Sbjct: 68 FQTAFAIELKRFKNTLNRILPPDIRIKKIEKATAD--FHARYWA--KSKIYHYIFAKKPL 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + +LD ++ A ++G+++F +F + + + ++ F + N Sbjct: 124 NAFNYHFQVFVANLDFAKIKSAMNLIIGKYNFASFTNDKKEKNFNKTVLNAFVKETSQNY 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I I A FL +R VG L +G K + + L ++ LAP +GL+ Sbjct: 184 ILI-FHADGFLKYMVRFLVGGLIEIGKNKMSLELFKAMLTNTTNQKVSLLAPAKGLFLKK 242 Query: 244 VEY 246 + Y Sbjct: 243 IFY 245 >gi|227497212|ref|ZP_03927460.1| pseudouridylate synthase [Actinomyces urogenitalis DSM 15434] gi|226833297|gb|EEH65680.1| pseudouridylate synthase [Actinomyces urogenitalis DSM 15434] Length = 229 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 12/161 (7%) Query: 97 VDKQFHARFSAIRRSYLYRIIT------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 V F ARFSA+ R Y+YRI R+A +G+ + ++LD E+M ++A+ L+ Sbjct: 41 VPADFDARFSALERRYVYRIDDGAPSQGRRAYDPCRRGQVLWVGQALDVESMALSARGLL 100 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 G HDF ++ + ++ IRT+ D L+ + VVA +F H+ +RS VG+ Sbjct: 101 GEHDFLSYCKPR-EGATTIRTLRRLDWQRASSGPDAGLVTLTVVADAFCHSMVRSLVGAG 159 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG G+ + + L A+ R + P+APP GL + V Y Sbjct: 160 LAVGQGRQPVSWPARLLAARSRDQAAPVAPPYGLTLEEVVY 200 >gi|24215440|ref|NP_712921.1| pseudouridylate synthase [Leptospira interrogans serovar Lai str. 56601] gi|42559814|sp|Q8CXS6|TRUA_LEPIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24196565|gb|AAN49939.1| pseudouridylate synthase [Leptospira interrogans serovar Lai str. 56601] Length = 207 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 12/171 (7%) Query: 78 ALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 +LNA I+D+ +SILN++ VD+ F +RFS R Y Y I+ + P K R + Sbjct: 20 SLNA---ITDSGLSILNMTEVDENFDSRFSCNSREYEYWILNTKYPRPTWKNRTFWYQHR 76 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVN-----SFGNLIEIRVVA 190 +D + + L G HDF + + + S +RTI DV L+++++ A Sbjct: 77 IDVPRLEAELELLKGEHDFRSLAKVASLKGRSTVRTI--LDVKLERSLELEGLLKVKIRA 134 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 FLH IR G+L + +GK T++ + L ++DR G PP GLYF Sbjct: 135 NGFLHNMIRILTGTLLEISNGKRKDTNVLEILSSKDRTIAGITLPPYGLYF 185 >gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A] gi|30913395|sp|Q8TU65|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A] Length = 269 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHA 57 +R + + Y G+ + G Q Q N +++ + KA+ + + + AGRTD+GVHA Sbjct: 1 MRVALKLAYIGTEFHGSQIQPNVETVEKELFKALRNLSIIESPKSADYTCAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD E + + + +N+ ++ I + V F AR SA+ R Y Y Sbjct: 61 LGQVVAFDT--EKPNLAIPRVINS--ELPPAIWAWAHAEVPYYFDARRSAVSRHYHYV-- 114 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + + D MR A++ L+G HDF F + + S+ +RT++ +V Sbjct: 115 --------------MSGEDYDISKMREASKLLLGTHDFENFSRSNGEKST-VRTLERINV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + +I VV SFL +R V +L ++G+G + L + L + +E APP Sbjct: 160 RVDGEITKIDVVGNSFLWNMVRKIVTALSMIGNGVRDNDWLLQMLNPEIYEEGIEPAPPY 219 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 220 GLTLMGVNY 228 >gi|47206562|emb|CAF94488.1| unnamed protein product [Tetraodon nigroviridis] Length = 181 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 20/171 (11%) Query: 97 VDKQFHARFSAIRRSYLYRI---ITRQAPLAL-EKGRAW-LIPKSLDCENMRIAAQHLVG 151 V FHARF A R+Y+YR+ I R++P+ L E G W L LD M AA LVG Sbjct: 7 VADNFHARFCAQSRTYVYRVALGICRKSPVPLPEHGFCWNLRDTELDVGGMCEAAALLVG 66 Query: 152 RHDFTTFRSIHCQA--SSPIRTIDHFDVN---SFGNL--------IEIRVVARSFLHTQI 198 HDF++FR+++ +P++ +D + SF + +E+ +RSFL+ Q+ Sbjct: 67 VHDFSSFRAVNSDLPFKNPVKRLDAATIQTGVSFAQVHYHRVIPFLELIFTSRSFLYKQV 126 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEYS 247 R G+L VG G+ + L++ L+A+D G AP GL+ V+Y+ Sbjct: 127 RRMTGALVAVGQGRLSVAQLKEVLEARDSLAYPQGLTAPAHGLFLTRVDYT 177 >gi|47097169|ref|ZP_00234734.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 1/2a F6854] gi|47014428|gb|EAL05396.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 1/2a F6854] Length = 133 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV HFD + KAL IS L + V FHARF + + Y Y Sbjct: 61 QVIHFDSELDITAEKFQKALQVMTPFD--ISFLTVEEVPDDFHARFGTVGKEYRY 113 >gi|195012380|ref|XP_001983614.1| GH25313, isoform B [Drosophila grimshawi] gi|193897096|gb|EDV95962.1| GH25313, isoform B [Drosophila grimshawi] Length = 317 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 126/305 (41%), Gaps = 60/305 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +SIQG +E A +F EI V + R Sbjct: 1 MHRYLLNISYIGTNFRGIQKTINKLEEARLDTNSIQGCLELALRVFRPKNEIQTV-LSSR 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L K I IL+ V FH R+ Sbjct: 60 TDAGVHALHSTVHVDLERSDGKPYDTSTLTGVLNRTLDKHKLPIRILSSQRVVDTFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALEKGRA-------------------WLIPKSLDCENMRIAA 146 A R+YLYR+ ++ KG + +L + D E + AA Sbjct: 120 HATGRTYLYRVAVAKSVSEASKGSSLKNKGYESFVPVEEIDRCYFLHCDNFDVERLHGAA 179 Query: 147 QHLVGRHDFTTFRSIHCQASSP-------IRTIDHFDVNSFGNLI--------------- 184 + +G HDF TF S+ Q S +R ID ++ L Sbjct: 180 RMFLGLHDFRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGQTLALGPNAKLATQTYDYW 239 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYF 241 +I + A+SFL+ Q+R VG+L + + + + + L + +AP GLY Sbjct: 240 DIEIKAKSFLYKQVRRIVGTLLALANSRIDERCIYQMLTIPSKHNWDSRVVVAPACGLYL 299 Query: 242 DSVEY 246 V Y Sbjct: 300 CRVHY 304 >gi|315452593|ref|YP_004072863.1| tRNA pseudouridine synthase A [Helicobacter felis ATCC 49179] gi|315131645|emb|CBY82273.1| tRNA pseudouridine synthase A [Helicobacter felis ATCC 49179] Length = 246 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 117/258 (45%), Gaps = 28/258 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M++ Y+GS ++G+ +Q N S++G++E A+ L G + AGRTD GVHAL Q Sbjct: 1 MGRFQMLLAYDGSAFYGYAKQPNLPSVEGALESAL-LKLGISSPILCAGRTDRGVHALCQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V F P+ L + L +L K+ I + V FH RF A R LYR I Sbjct: 60 VISFS-----TPLSL-QTLQRHLPPKLPAPILCKGIQEVPLDFHPRFDATWR--LYRYIC 111 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIHCQASSPIRTIDHF 175 P + R + ++ A VG HDF F + H Q RTI Sbjct: 112 TNIPPSPFLSRFIAHCAYGPLKLIQEALNLFVGTHDFKFFCKRETRHTQ-----RTIHST 166 Query: 176 DV------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 V N +I IR A SFL Q+R V + GK + DL+ + + R Sbjct: 167 KVYQRVLYNHPCIVIAIR--APSFLRAQVRLMVSAALAHSLGKLSLEDLKAQIATRARHH 224 Query: 230 CGPLAPPEGLYFDSVEYS 247 LAPP+GLY V Y Sbjct: 225 -HLLAPPQGLYLARVAYP 241 >gi|74227733|dbj|BAE35706.1| unnamed protein product [Mus musculus] Length = 219 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 26/197 (13%) Query: 54 GVHALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 G+HAL AH D+ R + P ++ KALN +LK I +L V FHAR +A Sbjct: 3 GLHALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLK-HPAIRVLKAFRVPNDFHARHAAT 61 Query: 109 RRSYLYRIIT-----RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 R+Y YR+ T Q P+ E+ W L + LD M+ AAQHL+G HDF+ F+S Sbjct: 62 SRTYQYRLATGCSWPNQLPV-FEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAG 120 Query: 163 CQASSPIRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVG 209 ++ +RT+ V+ + ++SFL+ Q+R L VG Sbjct: 121 SPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVG 180 Query: 210 DGKWTSTDLEKALQAQD 226 G T ++ L++QD Sbjct: 181 LGILAPTQVKVILESQD 197 >gi|171920798|ref|ZP_02931982.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179091|ref|ZP_02964822.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024013|ref|ZP_02996773.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518366|ref|ZP_03003873.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524280|ref|ZP_03004323.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867909|ref|ZP_03079907.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273508|ref|ZP_03206044.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554225|ref|YP_002284984.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550684|ref|ZP_03771633.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551354|ref|ZP_03772300.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|238057738|sp|B5ZC44|TRUA_UREU1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171903560|gb|EDT49849.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208984|gb|EDU06027.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019040|gb|EDU57080.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998036|gb|EDU67133.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659898|gb|EDX53278.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660386|gb|EDX53645.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250028|gb|EDY74808.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541726|gb|ACI59955.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379169|gb|EEH01534.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379838|gb|EEH02200.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 241 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 117/251 (46%), Gaps = 16/251 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHAL 58 + Y + I Y+GS ++GW +Q ++Q +E K IF + + + G+GRTD GVHA Sbjct: 1 MNYKISIRYDGSLFYGWAKQPQKRTVQEHLETVFKTIFKIND--IKIIGSGRTDRGVHAY 58 Query: 59 RQ---VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 Q V H L E P ++ +AL + +I + IL + V FHA+ AI ++Y Y Sbjct: 59 EQVFSVNHHQLNYE--PQVIYQALCS--QIDPDVQILKVQSVHDTFHAQHDAISKTYQYI 114 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + L + + I + ++ + + A + VG +DF +F + ++ R I+ Sbjct: 115 INDYEFDL-FKHNYEYFIHQKINDQKLLEALELFVGEYDFKSFSTSELPLTT--RKINWV 171 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +EI + FL +R + + K + T ++ L + LAP Sbjct: 172 KITR-NTRLEIYINGNGFLKNMVRMIISACIDYVFNKISLTQIKTLLTNPKKGASVKLAP 230 Query: 236 PEGLYFDSVEY 246 P GLY V Y Sbjct: 231 PCGLYLYKVYY 241 >gi|83409929|emb|CAI64350.1| tRNA pseudouridine synthase A [uncultured archaeon] Length = 276 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 33/254 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH--------GAGRTDS 53 +R + I Y G+ Y G+Q Q + +I EK +F E+ ++ G+GRTD+ Sbjct: 1 MRIALKIAYIGTEYHGYQIQPDVPTI----EKELFRTLEELKIITDPKSARYIGSGRTDA 56 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV+AL QV F+ + + + + +N+ K+ +I + + + V F R A+ R Y Sbjct: 57 GVNALGQVVAFNT--DNPKLAIPRVINS--KLPPSIWVWSRAEVPDDFDPRRHAVSREYK 112 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y ++ + L+ +R A++ L G HDF F + S+ +RT++ Sbjct: 113 Y----------------FVCGECLNISLLRKASKLLRGTHDFANFATPDMDKST-VRTVE 155 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 D+ G LI + + A SF+ +R V +L++VGD L++ L + +E Sbjct: 156 RIDIRVEGRLINLDIKADSFVWHMVRKIVTALRMVGDQTREVEWLKRMLHPDEFEEGLEP 215 Query: 234 APPEGLYFDSVEYS 247 AP GL +V Y Sbjct: 216 APACGLLLKNVNYD 229 >gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis str. Marburg] gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis str. Marburg] Length = 273 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 112/252 (44%), Gaps = 33/252 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG------AGRTDSG 54 M + + + Y G+ Y G+QRQ + +++G + A L ++ G AGRTD G Sbjct: 1 MRKIALKVAYIGTNYHGFQRQPDVPTVEGKLLDA--LKEAGVIRSPGDSRFQIAGRTDRG 58 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHAL F E I +N L I +L + V F R+ + R Y Y Sbjct: 59 VHALGNFVSFFTEEE----IHVNQINDLL--PHDIKVLAWASVMYPFKVRY-PLERHYRY 111 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 L +G +S+D + M AA+H G HDF+ F + +PIR I+ Sbjct: 112 ---------ILHRG------ESMDIDAMAKAAEHFRGTHDFSNFS--RRRDRNPIRKIND 154 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V+ N I + V SFL +R V L LV +G+ + D+ + L +R P A Sbjct: 155 VRVSEDDNSILVDVYGESFLWQMVRKMVRVLLLVSEGELSPDDVPRLLDTDERVFIDP-A 213 Query: 235 PPEGLYFDSVEY 246 PPE L ++Y Sbjct: 214 PPENLILMDLKY 225 >gi|219129673|ref|XP_002185007.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403502|gb|EEC43454.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 373 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 84/179 (46%), Gaps = 32/179 (17%) Query: 100 QFHARFSAIRRSYLYRII----TRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRH 153 ++ ARFSA +R+YLYRI+ + E R+W I S LD E M+ AA++L G H Sbjct: 190 RWDARFSATQRTYLYRILHMCNDTDWAVPFEWNRSWRIRNSIPLDLEAMQRAAKYLTGTH 249 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNS------------------FG--------NLIEIR 187 DFT+FR+ C SP+ T++ V S FG L I Sbjct: 250 DFTSFRASGCSRYSPVVTLNQICVQSQPYGIAGLSGTFAKECALFGIPTTIDPLCLTTIS 309 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 SFL+ Q+R+ VG L VG G D L A+DR + AP GL+ V++ Sbjct: 310 FQGNSFLYRQVRNMVGYLVAVGKGWINCEDTVAVLNARDRTKAQSTAPAHGLFLVDVKH 368 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 17/96 (17%) Query: 3 RYCMIIEYNGSGYFG--WQRQK------NGSSIQG--SIEKAIFLVTGEIVVVHG----- 47 RY + ++Y G + G WQR + NG+ ++G S+E + ++V G Sbjct: 9 RYAVSLQYRGPPFLGFSWQRTQEDCILPNGTDLRGRQSVEGRLREALDKLVGRDGYDKIQ 68 Query: 48 -AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 + RTD GVHAL+ H D VR P L Y Sbjct: 69 VSSRTDRGVHALKNTCHID-VRTSFPDESGNVLTPY 103 >gi|288932131|ref|YP_003436191.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642] gi|288894379|gb|ADC65916.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642] Length = 256 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 29/240 (12%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y G+ + G Q Q +++G I KA E + AGRTD+GVHA+ V DL Sbjct: 5 IAYIGTNFHGSQYQPELRTVEGEIRKAFEKAGIEYGKIMFAGRTDAGVHAIGNVFATDL- 63 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 E + K LN+ L + +S+ +VD+ F R A R Y Y I+ Sbjct: 64 -EEFSKKVVKKLNSNL--PEDVSVWGYKVVDENFKPR-KAKWRKYCYVILD--------- 110 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + + E M+ AA+H VG+HDF F + S +R + DV GNLI Sbjct: 111 -------EGYNLEEMKEAAKHFVGKHDFGIFVR---GSESCVREVYESDVEKRGNLIYFS 160 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + A +F +R SL + G +E+ + + APP GL V Y Sbjct: 161 IKANAFAWNMVRRMASSLMIAG-----KEGIEEFFKILKGERAVSAAPPNGLVLVDVHYG 215 >gi|294786442|ref|ZP_06751696.1| tRNA pseudouridine synthase A [Parascardovia denticolens F0305] gi|315226006|ref|ZP_07867794.1| tRNA pseudouridine synthase A [Parascardovia denticolens DSM 10105] gi|294485275|gb|EFG32909.1| tRNA pseudouridine synthase A [Parascardovia denticolens F0305] gi|315120138|gb|EFT83270.1| tRNA pseudouridine synthase A [Parascardovia denticolens DSM 10105] Length = 338 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 21/180 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--------TGEIVVVHGAGRTDS 53 +R + Y+G+ + GW RQ ++QG +E I V G + + AGRTD+ Sbjct: 1 MRLRIDCSYDGTAFHGWARQPGQRTVQGELEATIAKVLHLWKPDDDGHPITLVVAGRTDA 60 Query: 54 GVHALRQVAHFDLVREWVPVILC----------KALNAYLK--ISDTISILNLSIVDKQF 101 GVHA QV H DL E + V + +AL L+ + IS+ ++ F Sbjct: 61 GVHASGQVCHLDLEDEVLSVAMGHLDPATYRPWEALAYRLRRILPADISVRSIFPSPAGF 120 Query: 102 HARFSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 ARFSA R Y+YR+ + +G +P+ LD + M AAQ LVG HDF +F S Sbjct: 121 DARFSASDRVYVYRVADESSAYDPRLRGFVLNLPRRLDLDLMNQAAQSLVGLHDFGSFSS 180 >gi|157137669|ref|XP_001657123.1| hypothetical protein AaeL_AAEL003683 [Aedes aegypti] gi|108880780|gb|EAT45005.1| conserved hypothetical protein [Aedes aegypti] Length = 325 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/301 (26%), Positives = 128/301 (42%), Gaps = 57/301 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAI--FLVTGEIVVVHGAGR 50 M RY + + Y G+ + G Q+ ++ S++G +E A+ F E + + R Sbjct: 1 MNRYLINLSYIGTHFRGIQKNLLKDSGYLEDPHSVEGVLEIALKKFAPVNEFKI-KLSSR 59 Query: 51 TDSGVHALRQVAHFDLVR----EWVPVILCKALN-AYLKISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L + LN + I IL+ +V HAR Sbjct: 60 TDAGVHALHNTVHVDLERPSGKPYKTYKLTQGLNRTFGSQGLPIRILDTKLVPMSCHARL 119 Query: 106 SAIRRSYLYRI---------------ITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHL 149 A R+YLYR+ R P+ E R + I K D E ++ A Sbjct: 120 CAKSRTYLYRLGVLRPQYCDKVESHPFNRFVPID-EYDRCYFIAHKHFDIERLKRVASTF 178 Query: 150 VGRHDFTTFRSI------HCQASSPIRTIDHFDVN---------------SFGNLIEIRV 188 G HDF TF S+ S +RTI+H ++ + + +IR+ Sbjct: 179 QGYHDFRTFMSVARGNDRQHDPSFTLRTIEHISIDRGISMASAFNREQAERYYDYWDIRI 238 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK---ECGPLAPPEGLYFDSVE 245 RSFL+ Q+R VG+ + + + D+ + L ++ + +AP GL+ VE Sbjct: 239 KGRSFLYKQVRRMVGAWIGAAENRLSERDIYRMLTVPSQRSWCDQAVVAPAYGLFLCRVE 298 Query: 246 Y 246 Y Sbjct: 299 Y 299 >gi|312136442|ref|YP_004003779.1| tRNA pseudouridine synthase a [Methanothermus fervidus DSM 2088] gi|311224161|gb|ADP77017.1| tRNA pseudouridine synthase A [Methanothermus fervidus DSM 2088] Length = 277 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 31/252 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVH 56 M + + + Y G+ +FG+QRQ + +++G + KA+ L + AGRTD GVH Sbjct: 1 MKKIALKVAYIGTHFFGFQRQPDLRTVEGELIKALVETGILDESGVARFRSAGRTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V F + ++ +N+ L D + IL + V F R++ R Sbjct: 61 ALGNVVTFFTDED----VIINQINSCL--PDDVYILGKASVPYGFKTRYAYRRHY----- 109 Query: 117 ITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +++P L+ E M+ A++ GRHDFT F S + +PIR I+ Sbjct: 110 -------------RYVLPNDGLNIELMKEASKKFEGRHDFTNF-SRRVEERNPIRYIEKV 155 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 DV G I + V+ SFL +R V L +G ++ +++ L +++ P+ P Sbjct: 156 DVVDKGEYIWVDVIGESFLWQMVRKMVKVLFDIGKEEYEPEKIDEFLDTEEKVYIEPM-P 214 Query: 236 PEGLYFDSVEYS 247 PE L V Y Sbjct: 215 PENLILMKVMYK 226 >gi|313674169|ref|YP_004052165.1| tRNA pseudouridine synthase a [Marivirga tractuosa DSM 4126] gi|312940867|gb|ADR20057.1| tRNA pseudouridine synthase A [Marivirga tractuosa DSM 4126] Length = 261 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 16/255 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ Q ++QG +EK + FL GE + GAGRTD+ V A + A Sbjct: 9 YLVEIQYLGFRYHGWQFQHGLKTLQGMLEKTLNFLFQGEKFKILGAGRTDAMVSA--ESA 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI--ITRQ 120 +F+L + A + I++LN+ IVD +F+ ++Y Y + ++ Sbjct: 67 YFELFTNQALDLESFARELNENLPADINVLNVEIVDSKFNIIQDVRLKTYQYYFASVNKK 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P A I SLD M+ AA+ G +DF F + S +R I + Sbjct: 127 YPFAAPLMNC--IHHSLDISKMKEAARLFEGENDFRHFMVGDAENKSIVREIKESRIEEN 184 Query: 180 -------FGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 F + +V + F+ Q+R +G+L +G + + DLE ALQ Sbjct: 185 TALRASFFPEKSYVFIVKGKGFMRYQVRMMMGALIRIGRNEISLQDLEHALQGNPPNFTK 244 Query: 232 PLAPPEGLYFDSVEY 246 A GL VE+ Sbjct: 245 LNAAASGLMVKEVEF 259 >gi|308233892|ref|ZP_07664629.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] gi|328943600|ref|ZP_08241065.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] gi|327491569|gb|EGF23343.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] Length = 311 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 26/257 (10%) Query: 10 YNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 Y G+ + G+ Q S++G + +A+ + + AGRTD+GVHA Q F + + Sbjct: 50 YVGTHFCGYAAQNESVRSVEGCLTRALSTFLRRNITLTCAGRTDAGVHAHAQYVSFPITQ 109 Query: 69 EWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + + K ++A + D ISI L F ARFSA RSY YRI L Sbjct: 110 SELGMSKHKIMSALSGLCPDDISIRTLYRAPLDFSARFSACERSYTYRIALGPLKPILTH 169 Query: 128 GRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----------------I 169 W + + ++M A ++L G H+F +F C+ASS I Sbjct: 170 EFVWWVKNIPHVCMDDMNAAGEYLAGEHNFKSF----CKASSAQLLEEQGLSLNRCLTSI 225 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + V ++ + + +FLH +R SL VG G ++ L+ Q R Sbjct: 226 KVSRDYIVGE--QILRLDITGNAFLHNMVRIITASLLEVGRGARQPDWIQDVLRQQTRTA 283 Query: 230 CGPLAPPEGLYFDSVEY 246 AP +GL + V Y Sbjct: 284 AAMTAPAQGLTLERVGY 300 >gi|301618506|ref|XP_002938660.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Xenopus (Silurana) tropicalis] Length = 331 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 31/224 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG-----AGRTDSGVHA 57 RY + +Y G+ Y G S+ G ++ + + ++ V + RTDSGVHA Sbjct: 7 RYLVFFQYYGTKYSGVMETPVTQSVLG-VQNYLEMAAQKLRPVGTVKFFISSRTDSGVHA 65 Query: 58 LRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 + AH D+ R + IL +ALN +L+ + I +L V FHAR A+ R+Y Sbjct: 66 ICNSAHVDIQRANGKPPFTEDILVQALNHHLQ-PEPIRLLKAVRVCDNFHARHKALSRTY 124 Query: 113 LYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--S 166 +YR+ + P+ E+ W +P SL+ + A++ L+G H+F+ FRS + + Sbjct: 125 VYRVAAGCSHSELPV-FEENLCWAVPGSLNVAAIHEASEMLLGTHNFSAFRSANSENVFK 183 Query: 167 SPIRTIDHFDVNSFGNLI------------EIRVVARSFLHTQI 198 SPI+T+ D+ ++ + ARSFL+ Q+ Sbjct: 184 SPIKTLQQADITPSSGILTHHWQYRNLQFWDFTFRARSFLYKQV 227 >gi|328783921|ref|XP_001121186.2| PREDICTED: tRNA pseudouridine synthase-like 1-like [Apis mellifera] Length = 313 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 124/289 (42%), Gaps = 47/289 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTGEIV---VVHGAG 49 M RY + Y G+ Y G Q+ ++ +IQG++E A + + + + + Sbjct: 1 MTRYLIKFSYLGTQYRGMQKNVIQTENVIRDIDTIQGALETAFTTLIPKCIEWPKITCSS 60 Query: 50 RTDSGVHALRQVAHFDLVREW----VPVILCKALNAYL-KISDTISILNLSIVDKQFHAR 104 RTD GVH++ +AH D+ ++ P K +N Y I +L V K FH R Sbjct: 61 RTDIGVHSMCNLAHIDIKNKYDSIYYPNDTLKYVNRYFFDCHHNIRLLEFIPVKKTFHVR 120 Query: 105 FSAIRRSYLYRI-ITRQA-----PLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTT 157 R+YLYR +T+ P+ E R + I + D E ++ A Q +G DF T Sbjct: 121 KFIHSRTYLYRFSVTKNKDEHRIPIT-EINRCFHIRSDTFDLERIKRATQLFIGTKDFRT 179 Query: 158 F----------------RSIHCQASSPIRTIDHFDVN-SFGNLIEIRVVARSFLHTQIRS 200 F S+ + P+ D N + N+I +R FL+ Q+R Sbjct: 180 FSAKIVGNKPINYVRNLNSLTIEKGYPLMPNDPLSQNFEYWNII---CSSRGFLYKQVRR 236 Query: 201 FVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGPLAPPEGLYFDSVEY 246 VG+L +G GK T D+ LQ + AP GLY +VEY Sbjct: 237 IVGALFALGSGKITEKDITVMLQVPGCHNYLSQIETAPAYGLYLMNVEY 285 >gi|32266100|ref|NP_860132.1| tRNA pseudouridine synthase A [Helicobacter hepaticus ATCC 51449] gi|42559757|sp|Q7U328|TRUA_HELHP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|32262149|gb|AAP77198.1| tRNA pseudouridine synthase [Helicobacter hepaticus ATCC 51449] Length = 248 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 17/255 (6%) Query: 1 MIRYCMIIEYNGSGY--FGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y +I Y+GS + F Q+ K S+ G++++ F G + GAGRTD GVHA Sbjct: 1 MPTYKAVIAYDGSVFSGFALQKDKRLKSVLGTLKEG-FARVGIKSDIIGAGRTDKGVHAT 59 Query: 59 RQV-----AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 QV AHF + L LNA K+ I + +L IVD FH RF A+ RSY Sbjct: 60 GQVICFQSAHFLDSQVQAIESLRFLLNA--KLYPHIMVRSLHIVDDTFHPRFDALWRSYR 117 Query: 114 YRI-ITRQAPLALEKGRAWLIPKSLDCENM-RIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 + + T+ +P A ++ + + E + + A Q G+H+F F+ + IRT Sbjct: 118 FLLSPTQPSPFAAP----YVSYEKIGDETLFKNALQAFQGQHNFVFFKKNGSYTKNCIRT 173 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I ++ L + V FL Q+R VG+ + + L++ + Q + Sbjct: 174 IFAIKHYTYKGLDIVYVRGNGFLRAQVRLMVGAALAYSRAELSFHSLQEQINGQKQHYTY 233 Query: 232 PLAPPEGLYFDSVEY 246 P++ P GLY V Y Sbjct: 234 PIS-PNGLYLCEVGY 247 >gi|124486487|ref|YP_001031103.1| tRNA pseudouridine synthase ACD [Methanocorpusculum labreanum Z] gi|166228737|sp|A2SU30|TRUA_METLZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124364028|gb|ABN07836.1| tRNA pseudouridine synthase A [Methanocorpusculum labreanum Z] Length = 281 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 105/233 (45%), Gaps = 27/233 (11%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 + GS Y +R G + G IE +F E AGRTD GV A RQ+ F + E Sbjct: 14 FAGSQYQPHKRTVEGEFVAGGIELGLFSDAKE-AHFRTAGRTDKGVSARRQL--FSITTE 70 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 P + +ALN +L D I + + VD++F+ R++A RSY Y Sbjct: 71 -KPELAIEALNFHL--PDDIWCIGAAEVDEEFYPRYAARERSYRY--------------- 112 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI-RV 188 P D M+ AA L+G H+F+ F + P+RT+ +V + + V Sbjct: 113 --YFPYPADVSRMQDAASRLIGTHNFSGFAKMEA-GRDPVRTVTRAEVFEGKDGCPVFEV 169 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A+SFL +R G+L+ +G G D+ + L + P AP EGL F Sbjct: 170 AAKSFLWNMVRGMAGALQTIGLG-LCEPDVIEELLSSPTARVHP-APAEGLVF 220 >gi|195012378|ref|XP_001983613.1| GH25313, isoform A [Drosophila grimshawi] gi|193897095|gb|EDV95961.1| GH25313, isoform A [Drosophila grimshawi] Length = 496 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 114/268 (42%), Gaps = 57/268 (21%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKA--IFLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ N +SIQG +E A +F EI V + R Sbjct: 1 MHRYLLNISYIGTNFRGIQKTINKLEEARLDTNSIQGCLELALRVFRPKNEIQTV-LSSR 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYL-KISDTISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L K I IL+ V FH R+ Sbjct: 60 TDAGVHALHSTVHVDLERSDGKPYDTSTLTGVLNRTLDKHKLPIRILSSQRVVDTFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALEKGRA-------------------WLIPKSLDCENMRIAA 146 A R+YLYR+ ++ KG + +L + D E + AA Sbjct: 120 HATGRTYLYRVAVAKSVSEASKGSSLKNKGYESFVPVEEIDRCYFLHCDNFDVERLHGAA 179 Query: 147 QHLVGRHDFTTFRSIHCQASSP-------IRTIDHFDVNSFGNLI--------------- 184 + +G HDF TF S+ Q S +R ID ++ L Sbjct: 180 RMFLGLHDFRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGQTLALGPNAKLATQTYDYW 239 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +I + A+SFL+ Q+R VG+L + + + Sbjct: 240 DIEIKAKSFLYKQVRRIVGTLLALANSR 267 >gi|217034467|ref|ZP_03439879.1| hypothetical protein HP9810_890g12 [Helicobacter pylori 98-10] gi|216943069|gb|EEC22546.1| hypothetical protein HP9810_890g12 [Helicobacter pylori 98-10] Length = 242 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 109/246 (44%), Gaps = 18/246 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N S+Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLSVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFCAQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L YL I+ + +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAA----KLFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGAMTNPKRAIFNAFAYKTFIAGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EGLY 240 + +++ +FL + +R + + GK T + +QAQ + P GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIIQACVQYSLGKITLAE----IQAQIHNIKAAIRTPIMANGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHRVYY 242 >gi|261839825|gb|ACX99590.1| pseudo uridylate synthase I [Helicobacter pylori 52] Length = 242 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 110/248 (44%), Gaps = 22/248 (8%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYHLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE-- 185 A SLD N A + G+HDF+ F+ ++P RTI F+ ++ I Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRTI--FNAFAYKTFIAGH 178 Query: 186 ----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EG 238 +++ +FL + +R V + K T + +QAQ + P G Sbjct: 179 ECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAE----IQAQIHNAKATIRTPIMANG 234 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 235 LYLHRVYY 242 >gi|58699252|ref|ZP_00374050.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58534228|gb|EAL58429.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 100 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK 84 VAHFD+ +E + A+N +LK Sbjct: 61 VAHFDMEKECELYRIRNAINYHLK 84 >gi|255994429|ref|ZP_05427564.1| tRNA pseudouridine synthase A [Eubacterium saphenum ATCC 49989] gi|255993142|gb|EEU03231.1| tRNA pseudouridine synthase A [Eubacterium saphenum ATCC 49989] Length = 304 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 118/281 (41%), Gaps = 48/281 (17%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+GS + G+Q+ +S+QG IE A+ + G+ V + RTD+GVHA Q+ F Sbjct: 8 ISYDGSAFKGFQKNHGITSVQGEIENALKPIVGD-VEISAVSRTDAGVHAFSQIFSFSYD 66 Query: 68 REWVPVILCKAL-NAY-LKISD-----TISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 L + L NA+ + SD I+I + + + + R+ + Y+Y Sbjct: 67 TNIPHGRLAEVLTNAFSTRKSDYRKQAAIAIEGWAELGRAMNPRYFVKGKRYIYVFKKNA 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-------- 172 + L L+ M+ A+ VG HDF+ FR+ SPIR + Sbjct: 127 GSDIFARNYMLLTNGDLNVGRMKEEAKAFVGEHDFSAFRT--QDGRSPIRKVFSANVISC 184 Query: 173 ----DHFD---VNSFGNLIEI----------------------RVVARSFLHTQIRSFVG 203 D F + +G + +I V FL+ +R G Sbjct: 185 EELNDGFHEPLTDEYGRISDIIALKKRLLPRLNLSNLQGYVFFAVTGEGFLYNMVRIMAG 244 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +L VG K+ + L++++R+ G APP+GLY D V Sbjct: 245 TLLEVGKNKFDKPVCD-VLKSKNRQMAGITAPPQGLYLDEV 284 >gi|94502328|ref|ZP_01308801.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451115|gb|EAT14067.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 192 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 6/187 (3%) Query: 62 AHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHF+ + + + N++L ++ I I+N+ V K+ HARF+AI R Y YRI Sbjct: 3 AHFEFYEKKILLYRNFLFKFNSFLPLN--IKIINIFTVKKKIHARFTAISRVYEYRISLG 60 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P +L+ WL K + + A+ L D+++F C + I I + + Sbjct: 61 KNPFSLDISWQWLSKKKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHI 120 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N++ + A +L +RS VG+L +G GK T D L A+DR AP +GL Sbjct: 121 KNNILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRNIIS--APAKGL 178 Query: 240 YFDSVEY 246 + + Y Sbjct: 179 FLTKINY 185 >gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631] gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631] Length = 262 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 27/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALR 59 +R + Y G+ + G+Q Q N ++ G + KA + + AGRTD+GVHA Sbjct: 1 MRIAYKLAYVGTNFHGFQYQPNVRTVAGELFKAFRALGIDPKKAKFRCAGRTDAGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV ++ + P + NA+L + ++ + VD++F+ R A R+Y+Y Sbjct: 61 QVIAINVEKPIFP----RMFNAHL--PEDVTFWAWTEVDEKFNPR-HAKSRTYVY----- 108 Query: 120 QAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++P + D MR A++ L+G HDF+ F + IRTI + ++ Sbjct: 109 ------------VMPAEGYDISAMRKASKLLLGTHDFSNFTKKFGERRRCIRTIYNVELR 156 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + +V +F +R V +L+ VG G + E L + +E AP G Sbjct: 157 LDDGFVVLEIVGNAFTWNMVRCIVSALREVGSGHRSVEWFEDMLNPERHRERIEPAPAYG 216 Query: 239 LYFDSVEYS 247 L VEY Sbjct: 217 LILKDVEYE 225 >gi|330507400|ref|YP_004383828.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP-6] gi|328928208|gb|AEB68010.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP-6] Length = 271 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 30/250 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----AGRTDSGVHA 57 ++ + + Y G Y+G+Q+Q + ++ + +A+ +I V+HG AGRTD GV A Sbjct: 1 MKVALKLAYLGDNYYGFQKQPDRVTVDSQVRRAL----AQIGVIHGDFCYAGRTDRGVSA 56 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV F + + + + + +N ++ I SI F AR++A+ R Y Y Sbjct: 57 LGQVIDFWIDEDKIDLTRPRCVNG--RLPRDIWTWAWSIAPVGFSARWNALWREYQYL-- 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L LD + M AA L+G HDF F S ++ ++ ++ Sbjct: 113 --------------LWHPGLDRDLMEEAADMLLGEHDFRNFSSAKV---GTVKRVEKLEI 155 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 L + A FL +R VG+ + VG G+ K L + P AP E Sbjct: 156 RERDGLFIFDIRADGFLWNMVRKIVGATEKVGSGQ-KDMRWFKDLLRPELNHGAPTAPAE 214 Query: 238 GLYFDSVEYS 247 GL V Y Sbjct: 215 GLILMEVGYD 224 >gi|183601972|ref|ZP_02963341.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis HN019] gi|241190461|ref|YP_002967855.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195867|ref|YP_002969422.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218857|gb|EDT89499.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis HN019] gi|240248853|gb|ACS45793.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250421|gb|ACS47360.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793448|gb|ADG32983.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 103/235 (43%), Gaps = 41/235 (17%) Query: 48 AGRTDSGVHALRQVAHFDLVREW-------VPVILCKALNAYLK--ISDTISILNLSIVD 98 AGRTD+GVHA QV H D+ + + + +AL L + D I+I +S+ Sbjct: 12 AGRTDAGVHATHQVCHVDVPDQTLGQCVGHMNLTPVQALQTRLSRMMPDDIAIHGISVAP 71 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 F ARFSA+ R+Y+YRI + P K AW + LD M AA +G HDF + Sbjct: 72 AGFDARFSALERTYVYRIADARVPWDPRLKDFAWRTDRELDIAQMNAAAALTLGLHDFGS 131 Query: 158 FRSIHCQASSPIRTID---------------------HFDVNSFGNLIEIRVVARSFLHT 196 F +I + IR + H G L+ +VA +F Sbjct: 132 F-AIANPGGTTIREVKTAYWQRVPTRPLLGPGMGERYHTPAVESG-LLCFTIVADAFARN 189 Query: 197 QIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +RS VG+ VG GK W + + L+ GP+A P+GL + + Y Sbjct: 190 MVRSLVGACVQVGMGKRDVDWFAGKMRVPLR---EGSTGPIA-PQGLTLEHIAYP 240 >gi|170050837|ref|XP_001861491.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872293|gb|EDS35676.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 476 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 117/267 (43%), Gaps = 47/267 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M RY + + Y G+ + R ++ S++G++E A+ F E + + RTD+GVHAL Sbjct: 1 MNRYLINLSYVGTHFRDNGRLEDPQSVEGALEIALKKFRPVNEFKI-KLSSRTDAGVHAL 59 Query: 59 RQVAHFDLVR----EWVPVILCKALN-AYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 H DL R + P L + LN + I +L V FHAR A R+YL Sbjct: 60 NNAVHVDLERYNGKPYEPDKLTQGLNRTFGSQKIPIRVLRTRHVPLTFHARLCAKSRTYL 119 Query: 114 YRI----------------ITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFT 156 YR+ TR P+ E R + I K+ D + ++ AA G HDF Sbjct: 120 YRVGVLRPEFCDDPEQIHPFTRFIPID-EHDRCYFIANKNFDPDRLKRAAALCEGYHDFR 178 Query: 157 TFRSI------HCQASSPIRTIDHFDVNSFGNLI---------------EIRVVARSFLH 195 TF +I + +R I+ V ++ +IR+ ARSFL+ Sbjct: 179 TFMAIARGNLWQQMPTYTLRRIERITVERGSSMASAFSRKLADRYYEYWDIRIKARSFLY 238 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKAL 222 Q+R VG+ + + T D+++ L Sbjct: 239 NQVRRMVGAWIAAAEARITERDVQQML 265 >gi|110004220|emb|CAK98558.1| hypothetical trna pseudouridine synthase a protein [Spiroplasma citri] Length = 246 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 14/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ + IEY+G Y GW +QKN +IQG +EKA F + + + GA +TD+GVHA Q Sbjct: 1 MLYLLLSIEYDGYDYSGWVKQKNAWTIQGELEKAFFGICHQKIWTLGASKTDAGVHASDQ 60 Query: 61 VAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 L + V K ++ L I+I +V + F R + ++ Y+Y I + Sbjct: 61 KVLVKLPFQSQHLVFFIKTVSKTL--PPNINIKGYQLVSENFSVRTAKVKE-YVYTINDQ 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVN 178 + L + L+ + +Q VG HDF F + + RTI+ V Sbjct: 118 EYDL-FNHRYELKVNTPLNVRKLHQISQIFVGTHDFGYFAGVKPTENIVTQRTINKIWVK 176 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL----QAQDRKECGPL 233 + IEI + +SF+ QIR ++ GK + ++L+ L Q K C Sbjct: 177 RNKAKKIEIHFMGKSFIRYQIRMLTQNILACYAGKVSLSELQAQLKHPPQGATTKYC--- 233 Query: 234 APPEGLYFDSVEY 246 A P GL ++Y Sbjct: 234 AKPYGLCLKKIKY 246 >gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1] gi|34395892|sp|Q8PWT1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1] Length = 269 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 115/255 (45%), Gaps = 37/255 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDS 53 +R + + Y G+ + G Q Q S++ ++EK +F + ++ AGRTD+ Sbjct: 1 MRVALKLAYIGTEFHGSQIQ---PSVE-TVEKELFKALRNLRIIESPKSANYICAGRTDA 56 Query: 54 GVHALRQVAHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 GVHAL QV FD R +P I+ L TI + + V F AR A+ R Sbjct: 57 GVHALGQVIAFDTDRPNLAIPRIINSGL------PPTIWVWAHAEVPYDFDARRHAVSRH 110 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y Y I G + D MR A++ L+G HDF F + + S+ +RT Sbjct: 111 YRYVI----------SGEGY------DISKMREASKLLLGTHDFENFSRSNGEKST-VRT 153 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 ++ +V G++ +I VV SFL +R V +L ++G G + L + L +E Sbjct: 154 LERINVRVDGDITKIDVVGNSFLWNMVRKIVTALSMIGKGVRDNDWLIQMLNPDIYEEGI 213 Query: 232 PLAPPEGLYFDSVEY 246 AP GL V Y Sbjct: 214 EPAPAYGLTLMGVNY 228 >gi|302869940|ref|YP_003838577.1| tRNA-pseudouridine synthase I [Micromonospora aurantiaca ATCC 27029] gi|315501401|ref|YP_004080288.1| tRNA-pseudouridine synthase i [Micromonospora sp. L5] gi|302572799|gb|ADL49001.1| tRNA-pseudouridine synthase I [Micromonospora aurantiaca ATCC 27029] gi|315408020|gb|ADU06137.1| tRNA-pseudouridine synthase I [Micromonospora sp. L5] Length = 277 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 112/255 (43%), Gaps = 14/255 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW Q ++ G + + + LV G + AGRTD+GVHA Sbjct: 5 TRLRLDVSYDGTDFSGWAPQPARRTVAGVLMQTLDLVLGAGTATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPTPVWREHEGRLLRRLARLLPPDVRVRAMTEVPADFDARFSATFRRYEYRVT- 123 Query: 119 RQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 AP E R AW PK LD + AA LVG HDF + A++ +R + Sbjct: 124 -DAPWGAEPLRRGDTLAW--PKPLDLAALNAAAAGLVGEHDFAAYCRRKENATT-LREVT 179 Query: 174 HFDVNSFGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D + I + V A +F +RS VG++ + GDG+ L ++R Sbjct: 180 RLDWRRDPDGILVATVQADAFCQNMVRSLVGAMLVAGDGRRPVQWPAGLLTRRERSSEVT 239 Query: 233 LAPPEGLYFDSVEYS 247 +AP GL +V Y Sbjct: 240 VAPAHGLALVAVGYP 254 >gi|224010986|ref|XP_002294450.1| hypothetical protein THAPSDRAFT_264420 [Thalassiosira pseudonana CCMP1335] gi|220969945|gb|EED88284.1| hypothetical protein THAPSDRAFT_264420 [Thalassiosira pseudonana CCMP1335] Length = 264 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 34/268 (12%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ + GWQ Q S++QG IE+ + + V GAGRTD+GVHA Q HFDL Sbjct: 2 VAYHGTPFNGWQLQPGRSTVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDLF 61 Query: 68 REWVPV-------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII--- 117 + +P IL ++N + + + L L+ +HA A + Y YR+ Sbjct: 62 HDEIPFKPPTPPEILQHSMNRMMPLDIRMFHLQLAPYTP-WHAIQRAQSKWYSYRLTLGP 120 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS---------SP 168 T P+ R + LD E + Q VG HDF F Q + + Sbjct: 121 TLWNPME-RFTRTHFV--HLDMERLESILQLYVGTHDFGAFGGQLEQNAKKRNDGKRINT 177 Query: 169 IRTIDHFD---------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 +RT+ + + GN I + + L+ +R+ VG+ V G+ L Sbjct: 178 VRTVFRVELIQQEQLGFIGEEGNY-RIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLA 236 Query: 220 KALQAQDRKE-CGPLAPPEGLYFDSVEY 246 + L+ DRK+ APPEGL + V Y Sbjct: 237 ELLKIPDRKDNPSKPAPPEGLTLECVYY 264 >gi|322378343|ref|ZP_08052800.1| tRNA pseudouridine synthase A [Helicobacter suis HS1] gi|321149229|gb|EFX43672.1| tRNA pseudouridine synthase A [Helicobacter suis HS1] Length = 244 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 115/255 (45%), Gaps = 20/255 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M R+ +++ Y+GS + G+ +Q +++G + KA+ + +I+ AGRTD GVHA Sbjct: 1 MRRFKLVLAYDGSAFSGFAKQAGLYTVEGRLIKALESLQIPSKIL---AAGRTDRGVHAT 57 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F+ W L K L K+ I+ +L V FH RF A RR Y Y + Sbjct: 58 HQVIAFNTCDIWSSSKLLKHLAP--KLGYFIACKSLEEVPLSFHPRFEATRRRYRYFLSL 115 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHL---VGRHDFTTFRSIHCQASSPIRTIDHF 175 + L + + C +M I Q L G HDF F S IR+I Sbjct: 116 AKPSPFLSRFVGY-----HPCGDMGILKQALELFKGEHDFKFFSKSGSDPKSTIRSIYKA 170 Query: 176 DVNSFG--NLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + NL + +V A SFL +Q+R +G+ + + DL K + Q R Sbjct: 171 FCYPYMLYNLPCLVLVFEANSFLRSQVRLMLGAALACSLKQISLEDLYKQITLQRRFLMR 230 Query: 232 PLAPPEGLYFDSVEY 246 ++ P GLY SV Y Sbjct: 231 AVS-PSGLYLSSVFY 244 >gi|189241446|ref|XP_973048.2| PREDICTED: similar to CG34140 CG34140-PA [Tribolium castaneum] Length = 258 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 26/182 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIF-LVTGEIVVVHGAGRTDS 53 RY + Y G+ + G QRQ G S++QG +E A+ L VV+ + RTDS Sbjct: 5 RYLLHFSYIGTPFMGAQRQVTGRMPRPDDPSTVQGQLEMALKRLNPTNDPVVYLSSRTDS 64 Query: 54 GVHALRQVAHFDLVR----EWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAI 108 GVHAL H DL R E+ P + LN Y ++ I ++ V FH R +AI Sbjct: 65 GVHALNSTCHVDLYRSNELEYEPKTITICLNRYFDKNEVPIRVIKTYWVPPDFHCRHTAI 124 Query: 109 RRSYLYRI------ITRQA------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 R+YLYRI +T A P+ + + S + + M+ AA+ G HDF Sbjct: 125 SRTYLYRIAIAKTGVTEHATILNLLPIEEYQRCLFFYCDSFNIDEMKEAAKVFEGLHDFR 184 Query: 157 TF 158 TF Sbjct: 185 TF 186 >gi|270692650|ref|ZP_06222951.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270316015|gb|EFA28055.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 115 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 61/106 (57%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M+ A Q L+G HDF++FR+ CQ+ +P R + H +V+ G I + + A +F+H +R+ Sbjct: 1 MQQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIGQYIIVDIQANAFVHHMVRNI 60 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VGSL VG G ++ L ++R+ P A P+GLY V Y Sbjct: 61 VGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYLVDVIYP 106 >gi|254756838|ref|ZP_05208866.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] Length = 145 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 R+ R+ Y YR++ + + + P L+ ++R A + +G HDFT+F S Sbjct: 1 RYGVERKEYRYRVLVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKT 60 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RTI ++ + + R V FL+ +R VG+L VG GK + + L Sbjct: 61 DKKDKVRTIYEIELIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILA 120 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 Q+R+ G +AP GLY V Y+ Sbjct: 121 KQNRQFAGKMAPGHGLYLWQVNYN 144 >gi|270605639|ref|ZP_06221621.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270318160|gb|EFA29385.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 131 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 61/106 (57%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M+ A Q L+G HDF++FR+ CQ+ +P R + H +V+ G I + + A +F+H +R+ Sbjct: 1 MQQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIGQYIIVDIQANAFVHHMVRNI 60 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VGSL VG G ++ L ++R+ P A P+GLY V Y Sbjct: 61 VGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYLVDVIYP 106 >gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091] gi|121725515|sp|Q2NHB4|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091] Length = 274 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 34/257 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTD 52 M R + I Y GS + G+QRQ N +++G + V E ++ AGRTD Sbjct: 1 MRRVALKIAYIGSNFHGYQRQPNYRTVEGE----LLRVFKETNIIEDTWTAHYSVAGRTD 56 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVH+ V F + I LN L D I I+ + V F RF + R+Y Sbjct: 57 KGVHSTGNVISFITDED----IHINQLNGLL--PDDIKIIGEARVPYGFKVRF-PLTRTY 109 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I +P K+LD M +A + +G+H+F F +P R I Sbjct: 110 TY--IQPISPFE---------KKNLDITKMHVAMESFIGKHNFRNFSK--RNEKNPNRKI 156 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++ +++ +V SFL +R V S+ VG GK D+ + L+ ++ ++ Sbjct: 157 IDVNLEVDEDVLIFTIVGESFLWNMVRKMVTSIMEVGYGKLDINDINELLKPKELRQFIR 216 Query: 233 L--APPEGLYFDSVEYS 247 L AP GL +EY Sbjct: 217 LQPAPANGLILSDMEYK 233 >gi|42559721|sp|P60353|TRUA_SPIKU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|34849384|gb|AAP58883.1| tRNA pseudouridine synthase [Spiroplasma kunkelii CR2-3x] Length = 260 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 20/256 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ + IEY+G Y GW +QKN +IQG +EKA F + + + GA +TD+GVHA Q Sbjct: 1 MLYLLLSIEYDGYDYSGWVKQKNARTIQGELEKAFFGICHQKIWTLGASKTDAGVHACDQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR----RSYLYRI 116 L + P + L ++K N++I QF A ++R + Y+Y I Sbjct: 61 KVLVKLTFQ--P----RHLAFFIKTVSQTLPPNINIKGYQFVAENFSVRTVKVKEYVYTI 114 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHF 175 ++ L + L+ + + +Q VG HDF F + + + + TI+ Sbjct: 115 NDQEYDL-FNHRYELKVNAPLNVKKLHQISQIFVGTHDFAYFAGVKPTEDIATVHTINKI 173 Query: 176 DVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR----KEC 230 V + IEI + F+ QIR ++ GK + T+L+ L + K C Sbjct: 174 WVKRNKAKKIEIHFRGKIFIRYQIRMLTQNILACYAGKVSLTELQAQLNCPPKGTTTKYC 233 Query: 231 GPLAPPEGLYFDSVEY 246 A P GL ++Y Sbjct: 234 ---AKPYGLCLKKIKY 246 >gi|317180826|dbj|BAJ58612.1| tRNA pseudouridine synthase A [Helicobacter pylori F32] Length = 242 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 110/246 (44%), Gaps = 18/246 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFCTP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P RTI + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKTFIAGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EGLY 240 + +V+ +FL + +R + + K T + +QAQ + P GLY Sbjct: 181 VVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAE----IQAQIHNIKATIRTPIMANGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHRVYY 242 >gi|332673893|gb|AEE70710.1| tRNA pseudouridine synthase A [Helicobacter pylori 83] Length = 242 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 109/248 (43%), Gaps = 22/248 (8%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHADNQVLSFYAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYHLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE-- 185 A SLD N A + G+HDF+ F+ ++P R I FD ++ I Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRAI--FDAFAYKTFIAGH 178 Query: 186 ----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EG 238 +++ +FL + +R V + K T + +QAQ + P G Sbjct: 179 ECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAE----IQAQIHNIKAAIRTPIMANG 234 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 235 LYLHRVYY 242 >gi|217032587|ref|ZP_03438076.1| hypothetical protein HPB128_159g13 [Helicobacter pylori B128] gi|298735906|ref|YP_003728431.1| tRNA pseudouridine synthase A [Helicobacter pylori B8] gi|216945723|gb|EEC24348.1| hypothetical protein HPB128_159g13 [Helicobacter pylori B128] gi|298355095|emb|CBI65967.1| tRNA pseudouridine synthase A [Helicobacter pylori B8] Length = 242 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 20/247 (8%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ ++ + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNMLGIKSVVV-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYCLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG------ 181 A SLD N A + G+HDF+ F+ ++P R I N+F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSLFKKEGGATTNPNRII----FNAFAYKTSIM 176 Query: 182 --NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++ +FL + +R + + K T ++E + P+ GL Sbjct: 177 GHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-ANGL 235 Query: 240 YFDSVEY 246 Y V Y Sbjct: 236 YLHRVYY 242 >gi|15644989|ref|NP_207159.1| tRNA pseudouridine synthase A [Helicobacter pylori 26695] gi|2499078|sp|P56144|TRUA_HELPY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2313463|gb|AAD07429.1| pseudouridylate synthase I (hisT) [Helicobacter pylori 26695] Length = 242 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 110/246 (44%), Gaps = 18/246 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VV+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIEDALNALGIKSVVI-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P RTI + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKTFIIGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EGLY 240 + +++ +FL + +R + + K T + +QAQ + P GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAE----IQAQIHNLKATIRTPIMANGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHRVYY 242 >gi|319955610|ref|YP_004166877.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237] gi|319424270|gb|ADV51379.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237] Length = 264 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 122/261 (46%), Gaps = 26/261 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + +++ G Y GWQ+Q +I+ + K + F++ + + GAGRTD+ V AL A Sbjct: 8 YLVKLQFLGFRYSGWQKQPGQKTIEAMLVKTLKFILPDQKFKILGAGRTDAKVSALD--A 65 Query: 63 HFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F+L + P+ + + A + I IL+++ VD+ F+ ++ + Y+Y Sbjct: 66 AFELYLDDTPIEVLEDFLALFNKNLPPDIRILSMTEVDESFNIIQNSKEKEYIYLFSFG- 124 Query: 121 APLALEKGRAWLIP------KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 EK + P +LD + M+ A++ G H+F ++ + + + IRT++ Sbjct: 125 -----EKSHPFCAPYLVTFLDNLDLDKMKTVAKYFEGTHNFKSYTARIQENTKVIRTVNS 179 Query: 175 --------FDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + N F V F+ QIR +G L VG G+ + ++ +L+ + Sbjct: 180 CGIIENKILEANFFPEKSYAFHVKGEGFMRYQIRMMMGVLVQVGKGELSEEEVLNSLKEE 239 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + +AP GL + V++ Sbjct: 240 NNMQLPFVAPGSGLILNQVDF 260 >gi|317182345|dbj|BAJ60129.1| tRNA pseudouridine synthase A [Helicobacter pylori F57] Length = 242 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 115/255 (45%), Gaps = 36/255 (14%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFYAQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y ++T+ Sbjct: 67 KHWNAAKLFYYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRY-LLTKNLK----- 116 Query: 128 GRAWLIP-------KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +L+P SLD N A + G+HDF+ F+ ++P RTI F+ ++ Sbjct: 117 -TPFLVPYIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGAITNPKRTI--FNAFAY 171 Query: 181 GNLIE------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 I +++ +FL + +R V + K T + +QAQ + Sbjct: 172 KTFITGHECVVFKIIGDAFLRSSVRLIVQACVKYSLEKITLAE----IQAQIHNIKATIR 227 Query: 235 PP---EGLYFDSVEY 246 P GLY V Y Sbjct: 228 TPIMANGLYLHRVYY 242 >gi|18977290|ref|NP_578647.1| tRNA pseudouridine synthase A [Pyrococcus furiosus DSM 3638] gi|24638312|sp|Q8U2C1|TRUA_PYRFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|18892961|gb|AAL81042.1| putative tRNA pseudouridine synthase a [Pyrococcus furiosus DSM 3638] Length = 266 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 28/249 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + G+QRQ N +I+G I +A+ E A RTD GV A V Sbjct: 1 MRVALKIAYDGTKFHGFQRQPNVRTIEGEILRALKDAGIEFENFKSASRTDRGVSARGNV 60 Query: 62 AHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + + P++L ++SD + I ++ V + FH RF A + Y Y Sbjct: 61 IALSTEDDRIKNPMVLNS------RMSD-VWIWGIAEVPEDFHPRFWANTKVYRY----- 108 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +L ++ + M+ + +G HDF+ F + + + IR+ID ++ Sbjct: 109 -----------YLPSLGMNIKKMKECSLLFLGTHDFSAFSRVDGRDT--IRSIDRIEIWE 155 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEG 238 N++ + + +SFL +R V +L L G + + L + ++ P APPEG Sbjct: 156 KCNVVVVEIEGKSFLWEMVRRIVSALVLCSQGVLAEERIVEMLNGKFEKSRKVPPAPPEG 215 Query: 239 LYFDSVEYS 247 L ++Y Sbjct: 216 LLLWDIKYE 224 >gi|115376217|ref|ZP_01463459.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] gi|115366790|gb|EAU65783.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 303 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 17/227 (7%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y G G+ G+QRQ G ++Q ++E A+ TG V AGRTD GVHA QV L Sbjct: 35 YRGGGFHGFQRQPEGPTVQSTLE-AVLRSTGVPATVMPAGRTDRGVHARMQVVSLRLEAG 93 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY------RIITRQAPL 123 P L L A L + + + FHA++SA ++Y Y R+ P Sbjct: 94 DTPEALAARLPALLPPD--LGVCAVRRPPPSFHAQWSAAGKTYCYRVQLGGRVSETWRPY 151 Query: 124 ALEKG-RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFDVNSF 180 LE L +++ E + Q VG+ DF F + +SSP RT++ V+ Sbjct: 152 VLEAAEEPRLAQRAIAPERLAELLQGAVGQRDFWAFHA----SSSPRKPRTLESATVHEL 207 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 G L EI++ SF Q+R VGS L G+ AL++ + Sbjct: 208 EGGLFEIQLRGDSFARYQVRYLVGSALLTAAGQLPEAQWRAALESAE 254 >gi|261838425|gb|ACX98191.1| pseudouridylate synthase I [Helicobacter pylori 51] Length = 242 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 22/248 (8%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFYAQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYHLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE-- 185 A SLD N A + G+HDF+ F+ ++P RTI F+ ++ I Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRTI--FNAFAYKTFIAGH 178 Query: 186 ----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EG 238 +++ +FL + +R + + K T + +QAQ + P G Sbjct: 179 ECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAE----IQAQIHNIKATIRTPIMANG 234 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 235 LYLHRVYY 242 >gi|2160170|gb|AAB60733.1| F21M12.19 gene product [Arabidopsis thaliana] Length = 250 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 55/198 (27%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + IEY G+ + G Q+Q ++ G ++ D+GVHAL V Sbjct: 56 RYLVAIEYIGTRFSGSQQQAKDRTVVGVLQ-------------------DAGVHALSNVC 96 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A R Sbjct: 97 HVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQER 156 Query: 111 S-----------------------YLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAA 146 + Y YR+++ PL+ LEK R W +P+ L+ M+ A Sbjct: 157 TVLGYDLKVYSLQLEIENLFTHCRYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEAC 216 Query: 147 QHLVGRHDFTTFRSIHCQ 164 + LVG HDF++FR+ CQ Sbjct: 217 RVLVGSHDFSSFRAAGCQ 234 >gi|315586982|gb|ADU41363.1| tRNA-pseudouridine synthase I [Helicobacter pylori 35A] Length = 242 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 108/245 (44%), Gaps = 16/245 (6%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGVYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFYAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ + + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYYLAP--KLAPHVVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE-- 185 A SLD N A + G+HDF+ F+ ++P RTI F+ ++ I Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRTI--FNAFAYKTFIAGH 178 Query: 186 ----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +V+ +FL + +R + + K T +++ + P+ GLY Sbjct: 179 ECVVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAEIQTQIHNTKAAIRTPIM-ANGLYL 237 Query: 242 DSVEY 246 V Y Sbjct: 238 HRVYY 242 >gi|301094360|ref|XP_002896286.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] gi|262109681|gb|EEY67733.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] Length = 300 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 31/274 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGE--IVVVHGAGRTDSGVH 56 +R ++EY+G+ +FG Q Q ++Q IE A+F TGE + + A RTD+GVH Sbjct: 30 VRRRCVVEYDGAAFFGSQAQDQPGALRTVQEVIEDALFRTTGEKGLPRLRFASRTDTGVH 89 Query: 57 ALRQVAHFDLVREWVPV--ILCKALNAYLKISDTI--SILNLSIVDKQFHARFSAIRRSY 112 AL QV F V + + + ALN L D + S+ ++ + F R R+ Y Sbjct: 90 ALGQVMVF--VSQCIESDRVFRDALNTRLP-DDVLCHSMTTMTEAEADFDPRSDTKRKRY 146 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG---RHDFTTFRSIHC--QASS 167 Y +I + W + K LD M+ A HL+ DF+ F + Sbjct: 147 EYELIVGGLRPVAHRRNVWYVHKPLDVAKMQEAIDHLMTPPTTKDFSAFTPQKAVDRERG 206 Query: 168 PIRTIDHFDVNS--------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 I TI +++S I + F + +R VG+L +G G+ Sbjct: 207 NICTISTIELHSTMMDDRGDAQYREDVATRIRLVFEGNRFRYKMVRILVGTLVDIGLGRL 266 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 D+ L +Q+R + G AP +GL V+Y Sbjct: 267 KPDDIPVILASQNRGKAGQGAPSQGLTLIWVKYD 300 >gi|153813978|ref|ZP_01966646.1| hypothetical protein RUMTOR_00185 [Ruminococcus torques ATCC 27756] gi|145848374|gb|EDK25292.1| hypothetical protein RUMTOR_00185 [Ruminococcus torques ATCC 27756] Length = 221 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 24/223 (10%) Query: 6 MIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + ++Y+G+ Y GW R +I I + +TGE + + +T GVHAL Q Sbjct: 6 LTLQYDGTRYLGWTRPAADGYAKTISYRISSVLQKMTGEDITLFAGAKTAPGVHALCQTV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + LN YL I IL+ IV +F + +A+ R+YLYRI T AP Sbjct: 66 NFHTESPFSDTYFLSKLNEYLP--KDIHILSSEIVSDRFRSDLNAVSRTYLYRICT--AP 121 Query: 123 LALEKGRAWL--IPKSL---DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + RA+ IP+ + + +R AA LVG HD FRS+ + FD+ Sbjct: 122 VQNIFTRAYTANIPEIISESEVAAIRKAADSLVGVHD---FRSLSGVKKKKGTVKEIFDI 178 Query: 178 ---------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 N +L+ I++ A FL+ + L G G Sbjct: 179 SVSHSKETENDSFSLLTIKICANDFLYLMPEHIIEFLNKKGSG 221 >gi|158298879|ref|XP_319023.4| AGAP009903-PA [Anopheles gambiae str. PEST] gi|157014098|gb|EAA14028.4| AGAP009903-PA [Anopheles gambiae str. PEST] Length = 457 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 100/243 (41%), Gaps = 46/243 (18%) Query: 50 RTDSGVHALRQVAHFDLVRE----WVPVILCKALN-AYLKISDTISILNLSIVDKQFHAR 104 RTD+GVHAL H DL R + + K LN A+ K ++ IL+ V FHAR Sbjct: 11 RTDTGVHALHNTVHVDLQRPNGKPYDSDRITKTLNRAFEKDGQSLRILSTVRVPASFHAR 70 Query: 105 FSAIRRSYLYRIITRQAPLALEKGR-----AWLIP------------KSLDCENMRIAAQ 147 A R+YLYR+ + A E GR A IP D A+ Sbjct: 71 LCAKSRTYLYRLAVLKREYARESGRQQHPHARFIPIEEHDRCYFLGHSEFDINAFASVAR 130 Query: 148 HLVGRHDFTTFRSI------HCQASSPIRTIDHFDVNS---------------FGNLIEI 186 G HDF TF ++ +A +R ID V + + ++ Sbjct: 131 MFEGMHDFRTFMAVAKGNPRQQEAMHSLRRIDQITVERGHTMTAAFNRERTEHYYDFWDV 190 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGP--LAPPEGLYFDS 243 R+ RSFL+ Q+R VG+ +G+ T D+ + L + C +AP LY Sbjct: 191 RIRGRSFLYRQVRRMVGAWVAAAEGRITERDIYRMLTVPSQNSWCSNVFVAPAYALYLCH 250 Query: 244 VEY 246 VEY Sbjct: 251 VEY 253 >gi|108563457|ref|YP_627773.1| tRNA pseudouridine synthase A [Helicobacter pylori HPAG1] gi|122980474|sp|Q1CSH3|TRUA_HELPH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|107837230|gb|ABF85099.1| pseudouridylate synthase I [Helicobacter pylori HPAG1] Length = 242 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 12/243 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIENALNTLGIKSVVV-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L YL I+ + +K FHARF A +R+Y Y + L Sbjct: 67 KHWN----VAKLFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDLLNS--ALKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTAFIMGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +++ +FL + +R + + K T ++E + P+ +GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIIQTCVQYSLEKITLAEIEMQIHNIKATIRTPIM-ADGLYLHR 239 Query: 244 VEY 246 V Y Sbjct: 240 VYY 242 >gi|208434988|ref|YP_002266654.1| pseudo uridylate synthase I [Helicobacter pylori G27] gi|238057732|sp|B5Z889|TRUA_HELPG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|208432917|gb|ACI27788.1| pseudo uridylate synthase I [Helicobacter pylori G27] Length = 242 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 12/243 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA Q F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQTLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYCLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSLFKKEGGATTNPKRAIFNAFAYKTFIIGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +++ +FL + +R + + K T ++E + P+ GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-ANGLYLHR 239 Query: 244 VEY 246 V Y Sbjct: 240 VYY 242 >gi|109947020|ref|YP_664248.1| tRNA pseudouridine synthase A [Helicobacter acinonychis str. Sheeba] gi|122973397|sp|Q17YM7|TRUA_HELAH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109714241|emb|CAJ99249.1| pseudouridylate synthase I [Helicobacter acinonychis str. Sheeba] Length = 242 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 19/200 (9%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q + +Q IE A+ L+ + VV+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPDKLGVQDKIESALNLLGIKSVVI-AAGRTDKGVHANNQVLSFHAQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L YL I+ + +K FHARF A +R+Y Y + L Sbjct: 67 KHWS----ADKLFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKSLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG------ 181 A SLD N A + +G+HDF+ F+ A++P R I N+F Sbjct: 123 YIACGDYGSLDSLNT--ALKQFIGKHDFSMFKKEGGAATNPKRII----FNAFAYKASIM 176 Query: 182 --NLIEIRVVARSFLHTQIR 199 + +++ +FL + +R Sbjct: 177 GHECVVFKIIGDAFLRSSVR 196 >gi|315304909|ref|ZP_07875014.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] gi|313626716|gb|EFR95744.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] Length = 127 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALR 59 M RY +I Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 8 MTRYKAVISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 67 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD KAL IS + + FHARF + + Y Y II R Sbjct: 68 QVIHFDSELAISAEKFQKALQVMTPFD--ISFITVEETPADFHARFGTVGKEYRY-IIKR 124 >gi|219363303|ref|NP_001136956.1| hypothetical protein LOC100217116 [Zea mays] gi|194697754|gb|ACF82961.1| unknown [Zea mays] Length = 201 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 5/167 (2%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + I + +S +FHAR S + Y Y+I A+ L+ M+ Sbjct: 5 LPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEAIMDPFHNHYAYHSAYKLNPHAMQE 64 Query: 145 AAQHLVGRHDFTTF-RSIHCQASS-PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 AA + VG HDFT+F + H P + I FDV G ++++ V FL+ Q+R+ V Sbjct: 65 AANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVTEMGAVLQLEVEGTGFLYRQVRNMV 124 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEY 246 L VG + + A+DRKE + APP GLY SV Y Sbjct: 125 ALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAPPHGLYLMSVNY 171 >gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter thermautotrophicus str. Delta H] gi|3915162|sp|O26928|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus str. Delta H] Length = 275 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 109/250 (43%), Gaps = 29/250 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQG----SIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + + + Y G+ Y G+QRQ + +++G ++E A + + AGRTD GVH Sbjct: 1 MRKIALKVAYIGTNYHGFQRQPDVPTVEGKLLEALEGAGIIEDPKRARFQIAGRTDRGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL F E + V L + I +L + V F R+ + R Y Y I Sbjct: 61 ALGNFVSF-FTEEDIHVNQINDL-----LPRDIRVLAWASVMYPFKVRY-PLERHYRY-I 112 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + R+ +S+D +M AA H G HDF+ F P+R I+ Sbjct: 113 LHRE--------------ESMDTYSMAEAAAHFRGTHDFSNFS--RRSDRDPVRRINDVR 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ G+ I I V SFL +R V +L +V +G+ D+ L R P+ PP Sbjct: 157 ISEVGDSIIIDVYGESFLWQMVRKMVRALLMVSEGELAPDDMAGLLDTDRRVFLEPM-PP 215 Query: 237 EGLYFDSVEY 246 E L ++Y Sbjct: 216 ENLILMDLKY 225 >gi|308184830|ref|YP_003928963.1| tRNA pseudouridine synthase A [Helicobacter pylori SJM180] gi|308060750|gb|ADO02646.1| tRNA pseudouridine synthase A [Helicobacter pylori SJM180] Length = 242 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 106/248 (42%), Gaps = 20/248 (8%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 I+ Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 7 IVAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFHA 65 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + W L YL I+ + +K FHARF A +R+Y Y + L Sbjct: 66 PKHWN----ADKLFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKSLKTPFLA 121 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG----- 181 A SLD N A + G+HDF+ F+ ++P R I N+F Sbjct: 122 PYIACGDYGSLDLLNT--ALKQFTGKHDFSLFKKEGGATTNPNRII----FNAFAYKTSI 175 Query: 182 ---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +++ +FL + +R + + K T ++E + P+ G Sbjct: 176 MGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-ANG 234 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 235 LYLHRVYY 242 >gi|219888663|gb|ACL54706.1| unknown [Zea mays] Length = 271 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I + +S +FHAR S + Y Y+I A+ L+ M+ AA + Sbjct: 79 IRVREISAARPEFHARSSTKSKVYRYKIYNEAIMDPFHNHYAYHSAYKLNPHAMQEAANY 138 Query: 149 LVGRHDFTTF-RSIHCQASS-PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 VG HDFT+F + H P + I FDV G ++++ V FL+ Q+R+ V L Sbjct: 139 FVGIHDFTSFANAAHNDGERRPTKKITRFDVTEMGAVLQLEVEGTGFLYRQVRNMVALLL 198 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEY 246 VG + + A+DRKE + APP GLY SV Y Sbjct: 199 QVGKEALPPDIVPAIIAARDRKELAKVALSAPPHGLYLMSVNY 241 >gi|291276765|ref|YP_003516537.1| putative tRNA pseudouridine synthase [Helicobacter mustelae 12198] gi|290963959|emb|CBG39798.1| putative tRNA pseudouridine synthase [Helicobacter mustelae 12198] Length = 245 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 113/246 (45%), Gaps = 15/246 (6%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 I Y+GS +FG+ +Q +G S+ ++E A+ +T I+ GAGRTD GVHA QV Sbjct: 8 IAYDGSKFFGFAKQDDGHKSVVQALEFALKSLGITSNII---GAGRTDRGVHATGQVIRV 64 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 ++ W L LN K+ +I + + V+ FH RFSA +R Y Y + Sbjct: 65 EIPDFWELERLRNLLNQ--KLHPSIFLRRIWRVEASFHPRFSAKKREYRYIFGNYLGNVW 122 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--- 181 + +W + D + + A VG+ DF F + IR I H + + Sbjct: 123 MASYVSW--ERYGDKKRISEALNLFVGKRDFGYFCKSGSDNKTTIRQIYHTRLYTHQIFK 180 Query: 182 -NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + A FL+ QIR +G++ + T +LE + A+ R P A P GLY Sbjct: 181 HDYLVACIQANGFLYGQIRLMMGAVLAYSRKELTYEELELQVLAKKRFYSIP-ASPNGLY 239 Query: 241 FDSVEY 246 + Y Sbjct: 240 LSKIFY 245 >gi|88807910|ref|ZP_01123421.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7805] gi|88787949|gb|EAR19105.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7805] Length = 251 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 101/220 (45%), Gaps = 14/220 (6%) Query: 27 IQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFD-----LVREWVPVILCKALN 80 +QG +E+AI L V AGRTD+GVHA QV HFD W P ALN Sbjct: 1 MQGVLEQAIADLDPHRPVHAVAAGRTDAGVHAAGQVVHFDSSGPIPANRWAP-----ALN 55 Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDC 139 L S I + +HA +SA R Y Y + + P +W ++ LD Sbjct: 56 GRLPAS--IRVREAVERPLSWHACYSATYRRYRYTLYNGRRPNLFLAPWSWHRYQARLDE 113 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 M A ++G HDF F+ + + TI V G+LI++ + A FL+ +R Sbjct: 114 HAMADALGGMLGSHDFAAFQRAGSRRAHSRTTIQDVSVQRRGDLIDLEIQATGFLYGMVR 173 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +G L VG+ + T E+ + + R+E APP+GL Sbjct: 174 LLMGQLVAVGEHRLTPEQFERRWRERRREEVKDGAPPQGL 213 >gi|308183197|ref|YP_003927324.1| tRNA pseudouridine synthase A [Helicobacter pylori PeCan4] gi|308065382|gb|ADO07274.1| tRNA pseudouridine synthase A [Helicobacter pylori PeCan4] Length = 242 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 109/246 (44%), Gaps = 18/246 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIEDALNALGIKSVVV-AAGRTDKGVHANNQVLSFYAQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKRFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKTFIIGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EGLY 240 + +V+ +FL + +R + + K T + +QAQ + P GLY Sbjct: 181 VVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAE----IQAQIHNIKATIRTPIMANGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHRVYY 242 >gi|188527873|ref|YP_001910560.1| tRNA pseudouridine synthase A [Helicobacter pylori Shi470] gi|238691941|sp|B2UUJ8|TRUA_HELPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188144113|gb|ACD48530.1| tRNA pseudouridine synthase A [Helicobacter pylori Shi470] Length = 242 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 109/246 (44%), Gaps = 18/246 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFYAQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ + + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYYLAP--KLAPHVVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKTFIIGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EGLY 240 + +++ +FL + +R V + K T + +QAQ + P GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAE----IQAQIHNIKATIRTPIMANGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHRVYY 242 >gi|317501503|ref|ZP_07959701.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088022|ref|ZP_08336944.1| hypothetical protein HMPREF1025_00527 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897132|gb|EFV19205.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409170|gb|EGG88625.1| hypothetical protein HMPREF1025_00527 [Lachnospiraceae bacterium 3_1_46FAA] Length = 252 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 24/207 (11%) Query: 6 MIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + ++Y+G+ Y GW R +I I + +TGE + + +T GVHAL Q Sbjct: 6 LTLQYDGTRYLGWTRPAADGYAKTISYRISSVLQKMTGEDITLFAGAKTAPGVHALCQTV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + LN YL I IL+ IV +F + +A+ R+YLYRI T AP Sbjct: 66 NFHTESPFSDTYFLSKLNEYLP--KDIHILSSEIVSDRFRSDLNAVSRTYLYRICT--AP 121 Query: 123 LALEKGRAWL--IPKSL---DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + RA+ IP+ + + +R AA LVG HD FRS+ + FD+ Sbjct: 122 VQNIFTRAYTANIPEIISESEVAAIRKAADSLVGVHD---FRSLSGVKKKKGTVKEIFDI 178 Query: 178 ---------NSFGNLIEIRVVARSFLH 195 N +L+ I++ A FL+ Sbjct: 179 SVSHSKETENDSFSLLTIKICANDFLY 205 >gi|317178604|dbj|BAJ56392.1| tRNA pseudouridine synthase A [Helicobacter pylori F30] Length = 242 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 11/196 (5%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFCAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKTFIAGHEC 180 Query: 184 IEIRVVARSFLHTQIR 199 + +++ +FL + +R Sbjct: 181 VVFKIIGDAFLRSSVR 196 >gi|317014476|gb|ADU81912.1| tRNA pseudouridine synthase A [Helicobacter pylori Gambia94/24] Length = 242 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 22/248 (8%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + V+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSGVI-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFHYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI--- 184 A SLD N A + +G+HDF+ F+ A++P R I F+ ++ I Sbjct: 123 YIACGDYGSLDLLNT--ALKQFIGKHDFSMFKKEGGAATNPNRII--FNALAYKTFIMGH 178 Query: 185 ---EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EG 238 +++ +FL + +R + + K T + +QAQ + P G Sbjct: 179 ECVAFKIIGDAFLRSSVRLIIQACVQYSLEKITLAE----IQAQIHNLKATIRTPIMANG 234 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 235 LYLHRVYY 242 >gi|317177844|dbj|BAJ55633.1| tRNA pseudouridine synthase A [Helicobacter pylori F16] Length = 242 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 114/255 (44%), Gaps = 36/255 (14%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + +VV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSIVV-AAGRTDKGVHANNQVLSFYAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y ++T+ Sbjct: 67 KHWNAAKLFYHLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRY-LLTKNLK----- 116 Query: 128 GRAWLIP-------KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +L+P SLD N A + G+HDF+ F+ ++P R I F+ ++ Sbjct: 117 -TPFLVPYIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRAI--FNAFAY 171 Query: 181 GNLIE------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 I +++ +FL + +R + + K T + +QAQ + Sbjct: 172 KTFIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAE----IQAQIHNIKAAIR 227 Query: 235 PP---EGLYFDSVEY 246 P GLY V Y Sbjct: 228 TPIMANGLYLHRVYY 242 >gi|257461391|ref|ZP_05626487.1| tRNA pseudouridine synthase A [Campylobacter gracilis RM3268] gi|257441114|gb|EEV16261.1| tRNA pseudouridine synthase A [Campylobacter gracilis RM3268] Length = 203 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 90/201 (44%), Gaps = 14/201 (6%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 + RTD GVHALRQV+ + W L + +N + + I + ++S V + FH R+ Sbjct: 16 SSSRTDKGVHALRQVSCVECTVHWELPRLKELINRH--CAPYIFVQHISPVPRDFHPRYD 73 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 A+ RSY Y ++ + P P+ +D + A + +G HDF F Sbjct: 74 AVARSYRY-VLNHERPSPFLSDFCVFYPR-VDLAALNAALANFIGEHDFREFMKSGSDIK 131 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQ 225 SP+R + SF NL I A FL Q+R V +LK V G+ S +AL Sbjct: 132 SPVRKLYVARAYSFRNLTLINFKANGFLRAQVRLMVANALKSVQSGRKIS--FSRALSRI 189 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 PP GLY SV Y Sbjct: 190 P-------FPPNGLYLSSVSY 203 >gi|15612084|ref|NP_223736.1| tRNA pseudouridine synthase A [Helicobacter pylori J99] gi|8134768|sp|Q9ZKC0|TRUA_HELPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4155610|gb|AAD06601.1| PSEUDOURIDYLATE SYNTHASE I [Helicobacter pylori J99] Length = 242 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 22/249 (8%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 I+ Y+G+ + G+ +Q N +Q IE A+ + + V+ AGRTD GVHA Q F Sbjct: 7 IVAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSGVI-AAGRTDKGVHANNQALSFHA 65 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 66 PKHWNAAKLFHYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLA 121 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE- 185 A SLD N IA + +G+HDF+ F+ ++P R I F+ ++ I Sbjct: 122 PYIACGDYGSLDALN--IALKQFIGKHDFSMFKKEGGATTNPNRII--FNALAYKTFIMG 177 Query: 186 -----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---E 237 +++ +FL + +R + + K T + +QAQ + P Sbjct: 178 HECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAE----IQAQIHNLKATIRTPIMAN 233 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 234 GLYLHRVYY 242 >gi|223945645|gb|ACN26906.1| unknown [Zea mays] Length = 222 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHL 149 + ++ V FHAR+ ++ R+Y YR++ ++ EK W I + LD ++M+ A L Sbjct: 2 VTDVCCVAPDFHARYKSLERTYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSIL 61 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLK 206 VG HDF++FR+ CQA+SP+RT+D V F + V RS L S V S K Sbjct: 62 VGHHDFSSFRAAGCQANSPVRTLDELSVTEVFPFMFFPSSVERSELELSNVSLVYSRK 119 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ARSFL+ Q+R VG LK VG G T+ D+E+ L A+ +AP GLY +V+Y Sbjct: 162 ARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSMAPSCGLYLANVKY 218 >gi|297279170|ref|XP_001093509.2| PREDICTED: hypothetical protein LOC705127 [Macaca mulatta] Length = 511 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 20/176 (11%) Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIIT---RQAPLAL-EKGRAW-LIPKSLDCENMRIA 145 +L V FHAR +A R+YLYR++T R A L + E+ W L LD M+ A Sbjct: 317 VLRAFRVPSDFHARHAATSRTYLYRLVTGCHRLAELPVFERNLCWTLQADCLDVAAMQEA 376 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS--FGNLI-----------EIRVVARS 192 AQHL+G HDF+ F+S SP+RT+ V+ L+ + ++S Sbjct: 377 AQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLQFWSLEFESQS 436 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 FL+ Q+R L VG G ++ L++QD K +AP GL+ SV Y Sbjct: 437 FLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQARVAPAHGLFLKSVLY 492 >gi|297380269|gb|ADI35156.1| tRNA pseudouridine synthase A [Helicobacter pylori v225d] Length = 242 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 11/196 (5%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VVV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVV-AAGRTDKGVHANNQVLSFYAQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ + + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYHLAP--KLAPHVVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKTFIIGHEC 180 Query: 184 IEIRVVARSFLHTQIR 199 + +++ +FL + +R Sbjct: 181 VVFKIIGDAFLRSSVR 196 >gi|254779646|ref|YP_003057752.1| tRNA pseudouridine synthase A [Helicobacter pylori B38] gi|254001558|emb|CAX29576.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Helicobacter pylori B38] Length = 242 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 12/243 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VV+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIEGALNALGIKSVVI-AAGRTDKGVHANNQVLSFYAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIARGDYGSLDLLNT--ALKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTAFIMGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +++ +FL + +R + + K T ++E + P+ GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-ANGLYLHR 239 Query: 244 VEY 246 V Y Sbjct: 240 VYY 242 >gi|307637758|gb|ADN80208.1| tRNA pseudo uridine synthase A [Helicobacter pylori 908] gi|325996359|gb|ADZ51764.1| tRNA pseudouridine synthase A [Helicobacter pylori 2018] gi|325997947|gb|ADZ50155.1| tRNA pseudouridine synthase A [Helicobacter pylori 2017] Length = 242 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 15/199 (7%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 I+ Y+G+ + G+ +Q N +Q IE A+ + + VV+ AGRTD GVHA Q F Sbjct: 7 IVAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVI-AAGRTDKGVHANNQALSFHA 65 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + W L YL I+ + +K FHARF A +R+Y Y + L Sbjct: 66 PKHWN----ADKLFHYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNLKTPFLA 121 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE- 185 A SLD N A + +G+HDF+ F+ ++P R I F+ ++ I Sbjct: 122 PYIACGDYGSLDLLNT--ALKQFIGKHDFSMFKKEGGATTNPNRII--FNALAYKTFIMG 177 Query: 186 -----IRVVARSFLHTQIR 199 +++ +FL + +R Sbjct: 178 HECVVFKIIGDAFLRSSVR 196 >gi|52548278|gb|AAU82127.1| pseudouridylate synthase [uncultured archaeon GZfos10C7] Length = 284 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 111/255 (43%), Gaps = 29/255 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVH 56 R + I Y G+ Y G+Q Q + +I+G + KA+ + + AGRTD+GVH Sbjct: 9 RIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGIIEDRKTANYSAAGRTDTGVH 68 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV F + + +N+ L +I + ++ F+AR AI R Y Y + Sbjct: 69 ALAQVVSFVTSNQNTT---PRMINSVLP-DGSIWVSAIAKPYSGFNARRDAISREYRYYL 124 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-----CQASSPIRT 171 Q L LD MR A++ VG HDF+ F + S IR Sbjct: 125 FL-QTEL------------DLDITRMREASELFVGTHDFSNFSLLQGNEYEVAGYSTIRD 171 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I +V + + I + A FL +R V +L++VG G +E L + ++ Sbjct: 172 IKRIEVKTKKPFVIIDIEASGFLRKMVRKIVSALRMVGSGMKDKRWIEDLLDLRIKEGIE 231 Query: 232 PLAPPEGLYFDSVEY 246 P AP GL +V Y Sbjct: 232 P-APAFGLVLKNVSY 245 >gi|317012865|gb|ADU83473.1| tRNA pseudouridine synthase A [Helicobacter pylori Lithuania75] Length = 242 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 12/243 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE + + + V+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIEGTLNALGIKSAVI-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFHYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKTFIIGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +++ +FL + +R V + K T ++E + P+ GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-ANGLYLHR 239 Query: 244 VEY 246 V Y Sbjct: 240 VYY 242 >gi|241745612|ref|XP_002412440.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215505839|gb|EEC15333.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 350 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 127/295 (43%), Gaps = 55/295 (18%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAI--FLVTGEIVVVHGAGRTDSGV 55 RY + Y G+ Y G QRQ + ++QG+IE A+ E V++ A RTD+GV Sbjct: 4 RYLLKFSYLGTRYRGMQRQSSRPCLENWTVQGAIEGALRNLRPLSEPVLI-LASRTDTGV 62 Query: 56 HALRQVAHFDLVRE-----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 HA H DLV + P+ + LN + D I + + V FHAR+ A Sbjct: 63 HASLSAGHVDLVPANTAQCYQPLQIFSVLNRHFARRDHDIVVREVLPVPSWFHARYLAKS 122 Query: 110 RSYLYRIITRQAPLALEKGRAW------LIP----------KSLDCENMRIAAQHLVGRH 153 RSY+YR+ + P LE+ L+P LD + A + L G H Sbjct: 123 RSYVYRVAVLR-PHVLEQSTVLGTTIRHLLPLNEINSCCAVPPLDFSRVHEAMELLSGEH 181 Query: 154 DFTTFRSI-HCQASSPIRTIDHFDVNSFG------------------NLIEIRVVARSFL 194 DF TF+++ +A + T+ +V F +L E + +RSFL Sbjct: 182 DFRTFKNVGRTKAEDEVNTVR--NVLDFTLRPSQPASAVADPLYDNVDLWEFHIKSRSFL 239 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 + Q+R V + VG + + + L+ + +AP GLY ++EY Sbjct: 240 YRQVRRMVSVVLHVGMHPESLPLVRRMLENPHKDSWDNKVRIAPACGLYLTNIEY 294 >gi|118474657|ref|YP_891922.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. fetus 82-40] gi|166228690|sp|A0RNY9|TRUA_CAMFF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118413883|gb|ABK82303.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. fetus 82-40] Length = 258 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 116/270 (42%), Gaps = 36/270 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ + YNGS + G Q Q + ++++ + A+ V G V + RTD GVHA+ Q Sbjct: 1 MMKIALTYSYNGSKFKGSQTQPDKNAVEDCLNFALNRV-GIFKPVVSSSRTDKGVHAISQ 59 Query: 61 VAHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V+ + W L +N + K I I N+ V +FH R+ A+ RSY Y I Sbjct: 60 VSCVECGEFWNERFERLKNQINKHTK--PYIYIKNIQKVSDEFHPRYDAVARSYRYIIYH 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + L + K+L+ + + IA + +G+HDFT F + S +R I F Sbjct: 118 DEQNVFLADYVHFY--KTLNIQRLNIALKLFIGKHDFTPFYKVGSGEKSTVREI--FYAK 173 Query: 179 SF------------------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 ++ L I A FL Q+R V + + +L K Sbjct: 174 AYQIYKTKDAKFSAKFKTQKPTLTIINFKANGFLRAQVRLMVAN---ALQACKSDENLYK 230 Query: 221 ALQAQDRKECGPL----APPEGLYFDSVEY 246 + + KE PL +PP GLY V Y Sbjct: 231 FI--SNFKEQKPLTRMPSPPNGLYLKRVFY 258 >gi|303233145|ref|ZP_07319818.1| tRNA pseudouridine synthase A [Atopobium vaginae PB189-T1-4] gi|302480730|gb|EFL43817.1| tRNA pseudouridine synthase A [Atopobium vaginae PB189-T1-4] Length = 321 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 25/221 (11%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y G + G+ Q+ +++G + + V V + AGRTD+GVHA Q F + E Sbjct: 62 YEGEQFAGYAFQEGQRTVEGCVRDVLQRVLRRDVTLTCAGRTDAGVHAHAQYVSFPVTHE 121 Query: 70 WVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 L ++LN + I+I + F ARF A RSY YRI T L Sbjct: 122 ECACAKSSLLRSLN--MLCPADIAIRTIYQAAPDFSARFDARSRSYTYRIATAPLKPVLT 179 Query: 127 KGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-------------IRT 171 W + ++M AAQ L+G H+F +F C+A+S I + Sbjct: 180 APFVWWNRHVHHVCMDDMNAAAQALIGEHNFESF----CKATSADVLKSQGLSLQRCITS 235 Query: 172 ID-HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 I+ H D LI I + +FLH +R GSL VG G Sbjct: 236 INVHRDYVLGEQLICIDIEGNAFLHNMVRIIAGSLLEVGRG 276 >gi|308063876|gb|ADO05763.1| tRNA pseudouridine synthase A [Helicobacter pylori Sat464] Length = 242 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 108/246 (43%), Gaps = 18/246 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + V+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSAVI-AAGRTDKGVHANNQVLSFYAQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ + + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYYLAP--KLAPHVVLKKLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKTFIIGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EGLY 240 + +++ +FL + +R V + K T + +QAQ + P GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAE----IQAQIHNIKATIRTPIMANGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHRVYY 242 >gi|210135252|ref|YP_002301691.1| tRNA pseudouridine synthase A [Helicobacter pylori P12] gi|238057731|sp|B6JMT3|TRUA_HELP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|210133220|gb|ACJ08211.1| pseudouridylate synthase I [Helicobacter pylori P12] Length = 242 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 12/243 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + V+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSAVI-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L YL I+ + +K FHARF A +R+Y Y + L Sbjct: 67 KHWS----ADKLFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDLLNT--ALKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTTFIMGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +++ +FL + +R + + K T +++ + P+ GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQMQIHNLKATIRTPIM-ANGLYLHR 239 Query: 244 VEY 246 V Y Sbjct: 240 VYY 242 >gi|116072175|ref|ZP_01469443.1| tRNA pseudouridine synthase [Synechococcus sp. BL107] gi|116065798|gb|EAU71556.1| tRNA pseudouridine synthase [Synechococcus sp. BL107] Length = 253 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 89/199 (44%), Gaps = 13/199 (6%) Query: 47 GAGRTDSGVHALRQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQF 101 AGRTD+GVHA QV HFD +W P ALN L S I + + + Sbjct: 22 AAGRTDAGVHAAAQVVHFDCSGPIPAAKWAP-----ALNGRLPAS--IRVRESVERPQDW 74 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 HA +SA+ R Y Y I + P W L+ ENMR+A + ++G HDF F Sbjct: 75 HACYSAVYRRYRYIIHNGRRPNLFLTPWTWHRYHHRLNEENMRVALEGMIGLHDFAAFMR 134 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + TI V G+LI + + A FL+ +R + L VG+ + + E+ Sbjct: 135 AGSRRLHSRTTIQDVLVEREGDLIRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVEAFEQ 194 Query: 221 ALQAQDRKECGPLAPPEGL 239 + + R + AP GL Sbjct: 195 RWRDRRRDQVKEAAPARGL 213 >gi|308062368|gb|ADO04256.1| tRNA pseudouridine synthase A [Helicobacter pylori Cuz20] Length = 242 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 108/246 (43%), Gaps = 18/246 (7%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + V+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSTVI-AAGRTDKGVHANNQVLSFYTQ 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ + + L +K FHARF A +R+Y Y + L Sbjct: 67 KHWNAAKLFYHLAP--KLAPHVVLKRLE--EKNFHARFDAQKRAYRYLLTKNLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF---GNL 183 A SLD N A + G+HDF+ F+ ++P R I + F +F Sbjct: 123 YIACGDYGSLDALNT--ALKQFTGKHDFSMFKKEGGAITNPKRAIFNAFAYKTFIIGHEC 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP---EGLY 240 + +++ +FL + +R V + K T + +QAQ + P GLY Sbjct: 181 VVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAE----IQAQIHNIKATIRTPIMANGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHRVYY 242 >gi|317011288|gb|ADU85035.1| tRNA pseudouridine synthase A [Helicobacter pylori SouthAfrica7] Length = 242 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 19/200 (9%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ L+ + VV AGRTD GVHA QV F Sbjct: 8 IAYDGAYFSGYAKQPNKLGVQDKIESALNLLGIKSAVV-AAGRTDKGVHANNQVLSFYAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L +YL I+ + +K FHARF A +R+Y Y + L Sbjct: 67 KHWN----ADRLFSYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKSLKTPFLAP 122 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG------ 181 A SLD N A + +G+HDF+ F+ ++P R I N+F Sbjct: 123 YIACGDFGSLDLLNT--ALKQFIGKHDFSMFKKEGGALTNPKRII----FNAFAYKTSIM 176 Query: 182 --NLIEIRVVARSFLHTQIR 199 + +++ +FL + +R Sbjct: 177 GHECVVFKIIGDAFLRSSVR 196 >gi|149184026|ref|ZP_01862387.1| tRNA pseudouridine synthase A [Bacillus sp. SG-1] gi|148848263|gb|EDL62552.1| tRNA pseudouridine synthase A [Bacillus sp. SG-1] Length = 150 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 11/146 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 11 MQRIKCTVAYDGSPFAGYQVQPGKRTVQLEIEKALSAIHKGDQVKITASGRTDAGVHAKG 70 Query: 60 QVAHFD----LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV HFD + E P +L K+ I + + V++ FHARFSA+++ Y Y Sbjct: 71 QVFHFDTGLSIPEEKWPTVLNS------KLPPEIVVTSAEEVEEGFHARFSAVKKEYRYS 124 Query: 116 IITRQAPLALEKGRAWLIPKSLDCEN 141 + + ++ A P L+ E Sbjct: 125 VYQTKTADPFKRDFALHYPFPLNIEE 150 >gi|307595363|ref|YP_003901680.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429] gi|307550564|gb|ADN50629.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429] Length = 272 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 32/240 (13%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA---HFDL 66 Y+GS + G+ N SI+ + +AI + + A RTD GV A+ V + D Sbjct: 10 YDGSLFSGFTGSTN--SIEYYLRRAIRYFIKDFKL-SKASRTDPGVSAIGNVVSINYIDS 66 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 +R ++ LN+ ++ + I + VD+ F AR +A+ R+Y+Y + Sbjct: 67 IR-----LVPGMLNS--RLPNGIRAWAWAEVDEGFRAR-AAVSRTYVYVM---------- 108 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 WL D + MR AA+ VG HD + F+ + + I++ ++ FG+ + Sbjct: 109 ---PWLYE---DIDLMRSAAKLFVGVHDLSNFQ-VKEKGVPTTVMINNVNIERFGDYLVF 161 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V+ R F + IR V +L++VG G T +L ++ + RK P APP GL +V Y Sbjct: 162 IVIGRGFRNKMIRKIVNALRMVGSGILTIDELRDLIELRIRKPIPP-APPYGLLLLNVNY 220 >gi|118374735|ref|XP_001020555.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila] gi|89302322|gb|EAS00310.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila SB210] Length = 309 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 34/278 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 ++Y Y G Y G+Q Q K SIQ +++ A+ +T + +H + RTD GV+A Sbjct: 15 VKYLATCSYIGMNYSGFQTQILNGKRIPSIQDALQDALKKITKQDTPIHTSSRTDQGVNA 74 Query: 58 LRQVAHFDLVRE-----WVPVILCKALNAYLKISD-TISILNLSIVD-KQFHARFSAIRR 110 L F + R P I+ K++N +LK + ISI N+ V F + +++++ Sbjct: 75 LAHPFVFIINRNQNQKILEPSIIKKSMNMHLKDAKHQISIENIYYVHLTDFDVKANSLKK 134 Query: 111 SYLYRIITRQ----APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y Y I A + + + + +D E + A Q VG H+F F +I + Sbjct: 135 EYNYFIEANLKDNWANTFQQHKQVTTMTERIDQEKLNQALQQYVGTHNFQNF-TIKAEHI 193 Query: 167 SP----IRTIDHFDVNSF-------GNLIEIRVVARSFLHTQIRSFVGSL------KLVG 209 S +RTID + ++ I+I A+SFL QIR VG KL Sbjct: 194 SHFGCYVRTIDSITIENYSHPFYEEAQCIKIIFKAKSFLAYQIRFMVGEALQYALGKLDF 253 Query: 210 DGKWTSTDLEKALQAQDRKECGPL-APPEGLYFDSVEY 246 D D K L Q+ E + A P GL V+Y Sbjct: 254 DSFLKLLDPPKELTPQEVHENNRIRAQPRGLMLKRVDY 291 >gi|163784111|ref|ZP_02179057.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] gi|159880615|gb|EDP74173.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] Length = 175 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 9/172 (5%) Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 + LNA L ISI V FHARFSA ++Y+Y++ T+ P ++G W I + Sbjct: 4 RYLNAVL--PRDISIKECKQVPLSFHARFSAKGKTYIYKVYTQPDPFMYQRG--WYISQK 59 Query: 137 LDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 LD EN+ A Q + + + + + + IR F G L++ + A FL Sbjct: 60 LDLENIAEAVQLIKNTENLISMSKKGDYLREDVEIR---EFRFKYDGFLLKFEISASHFL 116 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R V + VG G+ T ++ L ++D +APPEGLY V Y Sbjct: 117 RYMVRKIVAHVVHVGTGRITIDTFKQILDSKDPARALFIAPPEGLYLKEVYY 168 >gi|184200291|ref|YP_001854498.1| tRNA pseudouridine synthase TruA [Kocuria rhizophila DC2201] gi|183580521|dbj|BAG28992.1| tRNA pseudouridine synthase TruA [Kocuria rhizophila DC2201] Length = 331 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 76/310 (24%), Positives = 121/310 (39%), Gaps = 71/310 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--------------TG------- 40 +R + + Y+G+ + GW RQ S+Q ++E A+ LV TG Sbjct: 8 VRLRIDLAYDGAPFRGWARQPGLPSVQEAVEDALCLVFRVRCPTVVAGRTDTGVHARSQT 67 Query: 41 -----------EIVVVHGAGRTDSGVHALRQVAHFDL------------VREWVPVILCK 77 + G GR + A AH R V +L + Sbjct: 68 VHVDVPREAWERVTRSRGTGRVAGALPASPDPAHASAPAATTGTVAASDARGPVDPVLAR 127 Query: 78 ALNAYLKISDTISILNLSIVDKQ-------------------FHARFSAIRRSYLYRII- 117 LN L +L D+ F ARFSA+ R+Y YR+ Sbjct: 128 RLNGALN-----RVLGKDRADRGWEPVVGAVVVQSVAQAPPGFDARFSALSRAYRYRVAD 182 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R L + +W + LD M A + L+G HDF ++ A++ +R + V Sbjct: 183 ARTGHDPLTRTFSWWVDPQLDVAAMDGAVRELLGLHDFLSYCKPRAGATT-VRELQRATV 241 Query: 178 N-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +I + + A +F H +RS VG+L VG+G+ + + L+A+ R +AP Sbjct: 242 DRDEHGMITVALTADAFCHHMVRSVVGALVRVGEGRHGPSWPGERLRARTRDAAIVMAPA 301 Query: 237 EGLYFDSVEY 246 GL D+V Y Sbjct: 302 HGLVLDAVAY 311 >gi|20094324|ref|NP_614171.1| TruD family pseudouridine synthase [Methanopyrus kandleri AV19] gi|30913397|sp|Q8TWZ3|TRUA_METKA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19887376|gb|AAM02101.1| Pseudouridylate synthase of the TruA family [Methanopyrus kandleri AV19] Length = 256 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 112/249 (44%), Gaps = 30/249 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+GS Y G+Q Q + +I+G++ KA+ + E+V A RTD+G HA QV Sbjct: 1 MRVALRVAYDGSRYHGFQYQPDVPTIEGALRKALSELGLELVGY--ASRTDAGAHARYQV 58 Query: 62 AHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +V E P + +NA ++ I ++ + V ++F R A+R+ Y Y + Sbjct: 59 ----VVVEGDPELAQPDPINA--RLPKDIRVIAKTEVHEEFDPRRDALRKEYRYFLGPLN 112 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNS 179 P E AA+ L G+HDF+ FR +PI T++ + V Sbjct: 113 RP-----------------EAAARAARKLEGKHDFSAFR--REDGRNPIITVERCELVEI 153 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA-PPEG 238 N +RVVA FL +R G + VG G D E L + P P EG Sbjct: 154 TPNAYVLRVVAPRFLWEMVRRIAGFVWEVGHGLREEGDAEALLSGKFEPSKKPRCLPAEG 213 Query: 239 LYFDSVEYS 247 L +EY Sbjct: 214 LILWHIEYD 222 >gi|311745752|ref|ZP_07719537.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] gi|311302425|gb|EAZ79545.2| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] Length = 274 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 28/254 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVA 62 Y I Y G+ Y GW Q N ++Q +E+ + V G E + GA RTDSGV + Sbjct: 8 YLFSISYYGARYKGWAPQPNQQTVQRRLERVLRHVLGHEDFSLIGASRTDSGVSCVGGFV 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA- 121 L E +L N +L I + ++ V F+ S +++Y Y Sbjct: 68 QVFLRDEVEMDLLLPQFNEHLP--QDIHLNSVKEVSTTFNLIQSVKKKTYRYYFSNSSDF 125 Query: 122 -PLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHCQASS-------PIRT 171 P A A+++ S L+ E M A + +G+HDF +F C+ S + + Sbjct: 126 HPFA----SAFMVNASEELNWEAMNEACKSFIGKHDFKSF----CKPSENKTDYNREVLS 177 Query: 172 IDHFDVNSF------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + D N F + ++ FLH Q+R + +L +G G+ +++E ++ Sbjct: 178 AEICDSNEFMGQYFPHKIYYFQITGTGFLHHQVRMMMSALWQIGKGEMDLSEIEARFESS 237 Query: 226 DRKECGPLAPPEGL 239 DR E P AP GL Sbjct: 238 DRFEKLPPAPANGL 251 >gi|317009700|gb|ADU80280.1| tRNA pseudouridine synthase A [Helicobacter pylori India7] Length = 242 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 30/252 (11%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + VV+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSVVI-AAGRTDKGVHANNQVLSFYAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + W L L K++ I + L +K FHARF A +R+Y Y L + Sbjct: 67 KHWNAAKLFYYLAP--KLAPHIVLKKLE--EKNFHARFDAQKRAYRY--------LLTKN 114 Query: 128 GRAWLIPKSLDCEN------MRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-DHFDVNSF 180 + + + C + + A + G+HDF+ F+ ++P R I + F +F Sbjct: 115 LKTPFLAPYIACGDYGSLVALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKTF 174 Query: 181 ---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP- 236 + +++ +FL + +R + + K T + +QAQ + P Sbjct: 175 IIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAE----IQAQIHNIKAAIRTPI 230 Query: 237 --EGLYFDSVEY 246 GLY V Y Sbjct: 231 MANGLYLHRVYY 242 >gi|284166628|ref|YP_003404907.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Haloterrigena turkmenica DSM 5511] gi|284016283|gb|ADB62234.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Haloterrigena turkmenica DSM 5511] Length = 295 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 112/270 (41%), Gaps = 40/270 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV----------HGAGR 50 M I Y+G+GY G+QRQ + ++E AIF ++ V+ AGR Sbjct: 1 MPTRAFRIAYDGTGYHGFQRQPDVP----TVEDAIFDALRDLEVLAADADRPDGYAAAGR 56 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD+GV AL Q + +W + +ALN L I + +FHA A RR Sbjct: 57 TDAGVSALAQTVALE-APDW---LTPRALNGELPAD--IRAWAAADAPPEFHATHHAERR 110 Query: 111 SYLYRIIT---------RQAPLALEKG-RAWLIPKSLDCENMRIAAQHLVGRHDF--TTF 158 Y Y + R AP++ G R +++D + R A + L G HDF T Sbjct: 111 EYAYHLYAPPADSRRRDRAAPVSDRAGTRGSPGQRAVDDDRFRAACEALSGSHDFHNLTP 170 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + + S + I G+ + + V A F+ +R V + VG G + Sbjct: 171 DDRNTERSPTLEAI------RDGDFLVVTVTAGGFVRELVRRLVSLARAVGTGDAPLEKI 224 Query: 219 EKALQAQDRK--ECGPLAPPEGLYFDSVEY 246 ++A + E APPE L +V+Y Sbjct: 225 DRAFDPEPLPGHEGVAPAPPEPLVLTAVDY 254 >gi|42561241|ref|NP_975692.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|62901321|sp|Q6MSQ4|TRUA_MYCMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42492739|emb|CAE77334.1| pseudouridylate synthase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 251 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 15/246 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 Y+GS Y GW Q N SIQ ++ KAI + TG+ + GA +TD+ VHAL Q L+ Sbjct: 11 YDGSNYHGWINQTNAISIQTTLNKAIKKVIKTGQFKTI-GASKTDTNVHALDQKVL--LI 67 Query: 68 REWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P++ KA+N L SD I IL+ VD F+ R + Y Y I Q + Sbjct: 68 IYFTPILEKFIKAINKALP-SD-IKILDAKFVDPNFNIR-EVEYKIYHYYINDHQFDIFT 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFDVNSFGN 182 + + + +D ++ +G H+F F + RTID V N Sbjct: 125 NRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLRINN 184 Query: 183 LIEIRVVARSFLHTQIRSFVGS-LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I+ A F+ QIR + + L + K ++T L + LQ +K + +GL Sbjct: 185 KVVIQFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLQGIGKK-TPFIIDAKGLVL 243 Query: 242 DSVEYS 247 ++++ Sbjct: 244 QKIQFN 249 >gi|332293112|ref|YP_004431721.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171198|gb|AEE20453.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 259 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 17/255 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ+Q + +++ +E+ +++ + + +GRTD+ V A VA Sbjct: 8 YLLKIQYLGFRYHGWQKQPDVLTVERMMERTFSYVLDRKNFKLLASGRTDAKVSA--NVA 65 Query: 63 HFDLVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +L P+ K LN + I L ++ VDK+F+ + I + Y+Y Sbjct: 66 YVELFLNDSPLPEEGFLKLLNN--NLPQDIRCLEITQVDKKFNVMDAPIAKEYVYLFSYG 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--------RSIHCQASSPIRT 171 + I SLD E M+ AA+ G HDF ++ ++I +SS I Sbjct: 124 EKNHPFAAPYMINIAGSLDIELMKEAARLFEGEHDFRSYAYKPNPETKTIGNISSSLIEP 183 Query: 172 IDHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + + N F RV + F QIR +G L +G+GK +K L A + + Sbjct: 184 NELYTANFFPKESFAFRVSGKGFKRHQIRLMMGMLFDIGEGKVDLDFFKKTLDASNDIKL 243 Query: 231 GPLAPPEGLYFDSVE 245 +A GL +V+ Sbjct: 244 SRIAQASGLLLQNVQ 258 >gi|70952957|ref|XP_745611.1| tRNA pseudouridine synthase [Plasmodium chabaudi chabaudi] gi|56525989|emb|CAH74339.1| tRNA pseudouridine synthase, putative [Plasmodium chabaudi chabaudi] Length = 279 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 29/241 (12%) Query: 17 GWQRQKNGSSIQGSIEK--AIFLVTGEIVVVHGAGRTDSG---VHALR---QVAHFDLVR 68 +Q+ N + IE+ + L++ RTD G ++AL ++ + L Sbjct: 3 AYQKDNNNTVENKLIERLHQLDLISDSNCSFSRVSRTDKGSARMNALTIRLKIKYPHLSI 62 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + I K LN LK I I+++ V F AR + I+R+YLY + + Sbjct: 63 SIIEKIYLKELNKKLK---NIQIVHIQCVPNNFDARLNCIQRTYLYFFVNKN-------- 111 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLIEIR 187 + IP+ M AA+ +G HDF+ F S IRTI F++ N + Sbjct: 112 --YNIPR------MNEAAKIFLGEHDFSNFCKKRKNTISFIRTIHKFEIKRIDQNFYYFK 163 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPEGLYFDSVEY 246 + SFL+ QIR V SL LVG G+ D++ L+ K +A GL S ++ Sbjct: 164 IKGTSFLYNQIRHMVASLFLVGKGQLDEHDIKSMLENNSVKNKNYKIADECGLLLHSFKF 223 Query: 247 S 247 S Sbjct: 224 S 224 >gi|301320977|gb|ADK69620.1| putative tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 251 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 111/246 (45%), Gaps = 15/246 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 Y+GS Y GW Q N SIQ ++ KAI + TG+ + GA +TD+ VHAL Q L+ Sbjct: 11 YDGSNYHGWINQTNAISIQTTLNKAIKKVIKTGQFKTI-GASKTDTNVHALDQKVL--LI 67 Query: 68 REWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P++ KA+N L SD I IL+ VD F+ R + Y Y I Q + Sbjct: 68 IYFTPILEKFIKAINKALP-SD-IKILDAKFVDPNFNIR-EVEYKIYHYYINDHQFDIFT 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFDVNSFGN 182 + + + +D ++ +G H+F F + RTID V N Sbjct: 125 NRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLRINN 184 Query: 183 LIEIRVVARSFLHTQIRSFVGS-LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I A F+ QIR + + L + K ++T L + LQ +K + +GL Sbjct: 185 KVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLQGIGKK-TPFIIDAKGLVL 243 Query: 242 DSVEYS 247 ++++ Sbjct: 244 QKIQFN 249 >gi|325287844|ref|YP_004263634.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] gi|324323298|gb|ADY30763.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] Length = 270 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 36/267 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + +++ G + GWQ+Q +I+G + K + F++ + GAGRTD+ V AL A Sbjct: 14 YLIRLQFLGYRFSGWQKQPGYKTIEGMLAKTLKFILPERQYKILGAGRTDAKVSALD--A 71 Query: 63 HFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 F+L + P+ + L+ +LK + I I+++ V ++F+ + + Y+Y Sbjct: 72 AFELFLDGEPL---QDLDFFLKDFNKNLPSDIRIVSVKHVKEKFNIIQHSKEKEYVYLFS 128 Query: 118 TRQAPLALEKGRAWLIP------KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 EK + P +LD + M+ A VG H+F +F + + IR Sbjct: 129 FG------EKNHPYTAPFMANIQDNLDLDLMKKATSLFVGTHNFKSFTAKPKENGKFIRK 182 Query: 172 IDHFDVNSFGNLI-----------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 ++ ++ N I + F+ Q+R +G+L +G G+ T +D+E+ Sbjct: 183 VNSAEIKE--NTILKANFFPKKSYAFHIKGEGFMRYQVRMLMGALIQLGKGEVTLSDIEE 240 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 AL+ + +AP GL S+++ Sbjct: 241 ALKPNSTTKFVFVAPGSGLMLHSLDFK 267 >gi|261885752|ref|ZP_06009791.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 257 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 36/269 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + YNGS + G Q Q + ++++ + A+ V G V + RTD GVHA+ QV Sbjct: 1 MKIALTYSYNGSKFKGSQTQPDKNAVEDCLNFALNRV-GIFKPVVSSSRTDKGVHAISQV 59 Query: 62 AHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + + W L +N + K I I N+ V +FH R+ A+ RSY Y I Sbjct: 60 SCVECGEFWNERFERLKNQINKHTK--PYIYIKNIQKVSDEFHPRYDAVARSYRYIIYHD 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + L + K+L+ + + IA + +G+HDFT F + S +R I F + Sbjct: 118 EQNVFLADYVHFY--KTLNIQRLNIALKLFIGKHDFTPFYKVGSGEKSTVREI--FYAKA 173 Query: 180 F------------------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + L I A FL Q+R V + + +L K Sbjct: 174 YQIYKTKDAKFSAKFKTQKPTLTIINFKANGFLRAQVRLMVAN---ALQACKSDENLYKF 230 Query: 222 LQAQDRKECGPL----APPEGLYFDSVEY 246 + + KE PL +PP GLY V Y Sbjct: 231 I--SNFKEQKPLTRMPSPPNGLYLKRVFY 257 >gi|261403437|ref|YP_003247661.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7] gi|261370430|gb|ACX73179.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7] Length = 259 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 33/240 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G F Q +N + ++++ L +I+ + GRTD GV AL Sbjct: 2 YILKIAYDGRYSFQTQPHRNTVCDKVLNTLDEIDLLERRKII--YCGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L +E P +NA LK ++ I +L ++K R+ R Y Y Sbjct: 60 IVVELKKEPSP----SYINAKLK-NEGIWVLGYREIEKIPEVRY----RHYRY------- 103 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 ++P D E ++ A L G H F + + SPIRTI DV+ Sbjct: 104 ----------ILPNMGYDVEAIKRGASILTGTHSFHNLSKKDRTKDRSPIRTIFKIDVSE 153 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I + + +SFL +R VG+L LVG G+ +EK L+ +D KE P PP+GL Sbjct: 154 NEFYITLDIFGKSFLWNMVRKMVGALDLVGRGERPVNWIEKLLR-EDHKEGVPTFPPDGL 212 >gi|157164133|ref|YP_001466582.1| tRNA pseudouridine synthase A [Campylobacter concisus 13826] gi|112800733|gb|EAT98077.1| tRNA pseudouridine synthase A [Campylobacter concisus 13826] Length = 243 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 104/247 (42%), Gaps = 17/247 (6%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA--- 62 +I Y+GS + G Q Q + + ++ +E+A+ V G V + RTD VHA Q + Sbjct: 5 LIYSYDGSKFQGSQTQPHENGVEDELERALAHV-GIFERVVSSSRTDKSVHANNQSSSVI 63 Query: 63 ---HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HF + +I A +I I +++VD+ F ARF A+ RSY Y +I Sbjct: 64 CGDHFTNLERLRDLINHHA-------HPSIHIKRINLVDESFQARFDAVARSYRY-VIDH 115 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +PK D E ++ +G HDF+ + SP+R I + Sbjct: 116 GKFDVFSSNYKVFLPK-FDIEKANEILRNFIGEHDFSAYMKTGSDTKSPVREIYKAFCYT 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I A FL Q+R V +L K ++ +L P AP EGL Sbjct: 175 YKEQTIIVFKANGFLRGQVRLMVANLLKALKQKDGGKLIKASLNGHPALTRIP-APAEGL 233 Query: 240 YFDSVEY 246 Y + V Y Sbjct: 234 YLNRVFY 240 >gi|194699074|gb|ACF83621.1| unknown [Zea mays] Length = 414 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 43/287 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---------IVVVHG----A 48 + + ++I Y+G + GWQ+Q +++QG +EK + E + + G A Sbjct: 119 VTFKVVISYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVA 178 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL+QV F R+ V K A+N D + L++S V ++FH F+A Sbjct: 179 GRTDKGVTALQQVCSFYTWRKDVKSGDIKGAINE--AAPDKLKPLHVSEVSREFHPNFAA 236 Query: 108 IRRSYLY----------RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR----- 152 R Y+Y + Q+ LE + P+S D + + L G+ Sbjct: 237 KWRRYMYIFPLDEDADLILGEAQSSKTLENSEHNIKPQSFDVSKVDEILKPLAGKTLSYK 296 Query: 153 ---HDFTTFRSI----HC---QASSPIRTIDHFDVNSFGNLIE--IRVVARSFLHTQIRS 200 D RS+ C + + + + + + G ++ + +VA FL +R Sbjct: 297 MFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANRFLRKMVRV 356 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V + + L ++A DR+ P APPEGL V Y Sbjct: 357 LVATAIREAAAGAGADALLNLMEATDRRATAPPAPPEGLCLVDVGYE 403 >gi|223558061|gb|ACM91066.1| tRNA pseudouridine synthase A [uncultured bacterium 34R1] Length = 189 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 11/189 (5%) Query: 62 AHFDLVREWVPVI----LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 AHFD+ P+ LC++LN L +++ + V HARF A R+Y Y + Sbjct: 3 AHFDVD---APIADTDGLCRSLNGLL--GRDVAVYAIFPVADDAHARFDATSRTYKYFLH 57 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T ++P +W LD E M AA+HL+ DFT+F +H + + + Sbjct: 58 TAKSPFLYPL--SWECHFDLDFELMNEAAEHLLHYTDFTSFSKLHTDVKTNNCRVTYAHW 115 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + A FL +R+ VG+L VG + T + + ++A+DR E G P Sbjct: 116 ERVGEQWVFTITADRFLRNMVRAVVGTLVEVGRHRITVDEFCRIIEAKDRCEAGNSMPGN 175 Query: 238 GLYFDSVEY 246 L+ + Y Sbjct: 176 ALFLWDITY 184 >gi|68072249|ref|XP_678038.1| tRNA pseudouridine synthase [Plasmodium berghei strain ANKA] gi|56498378|emb|CAH98757.1| tRNA pseudouridine synthase, putative [Plasmodium berghei] Length = 281 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 37/235 (15%) Query: 17 GWQRQKNGSSIQGSIEK--AIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREW---- 70 +Q+ N + IEK + L++ RTD GV A L ++ Sbjct: 3 AYQKDNNNTVENKLIEKLQQLDLISDSNCSFSRVSRTDKGVSARMNALTIRLKNKYPHLS 62 Query: 71 ---VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + I K LN LK I I+++ V F AR + I+R+Y+Y Sbjct: 63 ISIIEKIYLKELNKKLK---NIQIIHIQCVPNNFDARLNCIQRTYVY------------- 106 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLIEI 186 + I K+ + M A + +G H+F+ F +S IRTI F++ + N Sbjct: 107 ---FFINKNYNITKMNEATKIFLGEHNFSNFCKKRKNNTSFIRTIHKFEIKNIDQNFYYF 163 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK--------ECGPL 233 ++ SFL+ QIR V +L LVG + D++ L+ K ECG L Sbjct: 164 KIKGTSFLYNQIRHMVAALFLVGKNQLDGQDIKSMLENNSIKNKNYKIADECGLL 218 >gi|51246208|ref|YP_066092.1| tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] gi|62901427|sp|Q6AKP0|TRUA2_DESPS RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|50877245|emb|CAG37085.1| related to tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] Length = 261 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 21/255 (8%) Query: 8 IEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 I Y G+ YFGWQ Q + +++G+I A+ +T + V GA RTD GVHA Q Sbjct: 8 IAYKGTHYFGWQAQSIDTLHEEKPTVEGTILNALKKITNYQPCTVSGASRTDGGVHARGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A + ++ P L + I IL K++ A ++ + Y Y I Sbjct: 68 IAKITISQKISPE--HLLLGLNSLLPTDIRILECVPSTKEYQASRGSVSKEYHYYFIASP 125 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A +P D +R A + VGRHDF F S S R I + D Sbjct: 126 VDNVATSDIALHLPIDSIGPDDLALLRSACRLFVGRHDFYNFSSRGSGTS--FREIFYCD 183 Query: 177 VNS------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 ++ ++ ++++ FL IR +G+L + G+ D+ LQ + Sbjct: 184 IHRANFSPLANDMFYLKIIGDGFLKYMIRYIMGALLELVRGRIVLDDISLYLQQHQEDKL 243 Query: 231 GPLAPPEGLYFDSVE 245 P A +GL+ +E Sbjct: 244 SPRAKAKGLHLIRIE 258 >gi|125556371|gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group] gi|125598125|gb|EAZ37905.1| hypothetical protein OsJ_22255 [Oryza sativa Japonica Group] Length = 417 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 44/287 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---------IVVVHG----A 48 + + +++ Y+G + GWQ+Q +++QG +EK + E + + G A Sbjct: 121 VTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVA 180 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL+QV F R+ V K A+N D + L++S V ++FH F+A Sbjct: 181 GRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINK--AAPDKLRPLHVSQVSREFHPNFAA 238 Query: 108 IRRSYLY--------RIIT--RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR----- 152 R YLY ++I+ Q+ +E + P+S D + + L G+ Sbjct: 239 KWRRYLYIFPLDEDVKLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYK 298 Query: 153 ---HDFTTFRSI---------HCQAS-SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 D RS+ H +A+ + + T D I I +VA FL +R Sbjct: 299 MFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVR 358 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V + L ++A R+ P APP+GL V Y Sbjct: 359 VLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGY 405 >gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304] gi|3915163|sp|O28544|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM 4304] Length = 265 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 23/247 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+++ I Y G + G Q Q + +++G + A+ + E + AGRTD+GVHA Q Sbjct: 1 MMKFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRLGVENPRLRSAGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + P + LNA ++ + I+ + V + F R A R Y Y Sbjct: 61 VISFYSEDKIFP----RMLNA--ELPEDITAWAWAKVSEDFDPR-RAKSRVYTYV----- 108 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + D MR A + L+G HDF+ F + S +R I D+ + Sbjct: 109 -----------MYGSDYDISAMRKAVKELIGVHDFSNFTKKFGEGESCVREIISADIRAD 157 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +F +R V ++ +G + L + KE APP GL Sbjct: 158 REFIIFEIEGNAFTWNMVRCIVTAIMEIGKQHRSIEWFRDLLNPEKHKERVEPAPPYGLI 217 Query: 241 FDSVEYS 247 V+Y Sbjct: 218 LKDVKYD 224 >gi|325959678|ref|YP_004291144.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21] gi|325331110|gb|ADZ10172.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21] Length = 271 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 28/252 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-----EIVVVHGAGRTDSGV 55 M++ + Y G+ Y G+QRQ N +I+G + +A F +G E AGRTD GV Sbjct: 1 MLKIAFKVAYIGTDYHGFQRQPNLPTIEGELLRA-FKKSGISDSPEKSDYSIAGRTDRGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL V ++ + +N YL I I+ ++V F R++ +R YR Sbjct: 60 SALGNVVCLKTDKD----VTINRINYYL--PSNIRIIGSTMVSNGFKPRYAKLRH---YR 110 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I ++ L P +L+ + M+ AA+ + G+H++ F +A P R + Sbjct: 111 YILDKS----------LCPNTLNLKLMKQAAKQMEGKHNYINFSKRSERA--PERMVYSV 158 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D+ + I VV SFL +R V L + G + T +LE P+A Sbjct: 159 DLVETPDNIVFDVVGESFLWNMVRKMVKVLVMFGREELTLENLETLFNPDVPAAIKPVA- 217 Query: 236 PEGLYFDSVEYS 247 +GL V Y Sbjct: 218 SDGLILMDVVYD 229 >gi|52075919|dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group] Length = 495 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 44/287 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---------IVVVHG----A 48 + + +++ Y+G + GWQ+Q +++QG +EK + E + + G A Sbjct: 121 VTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVA 180 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL+QV F R+ V K A+N D + L++S V ++FH F+A Sbjct: 181 GRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINK--AAPDKLRPLHVSQVSREFHPNFAA 238 Query: 108 IRRSYLY--------RIIT--RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR----- 152 R YLY ++I+ Q+ +E + P+S D + + L G+ Sbjct: 239 KWRRYLYIFPLDEDVKLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYK 298 Query: 153 ---HDFTTFRSI---------HCQAS-SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 D RS+ H +A+ + + T D I I +VA FL +R Sbjct: 299 MFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVR 358 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V + L ++A R+ P APP+GL V Y Sbjct: 359 VLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGY 405 >gi|307211854|gb|EFN87801.1| tRNA pseudouridine synthase A [Harpegnathos saltator] Length = 270 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 44/243 (18%) Query: 22 KNGSSIQGSIEKAIFLVTGEIVV---VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA 78 ++G ++QG++E A+ + + + ++ + RTD+GVHAL H +L ++ + Sbjct: 2 RDGDTVQGALEAALLNILPKTTIRPNIYLSSRTDAGVHALCNAGHVELENKYNVLYKDDN 61 Query: 79 LNAYL-----KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-----LALEKG 128 + A++ K TI +L + V FHAR S R+Y+YR + + P ++ Sbjct: 62 IKAFVNRYFNKCGHTIRLLEFTPVTNDFHARGSCKSRTYIYRFMIPKVPGEQRIPLVDAP 121 Query: 129 RAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +L+ D + ++ Q +G DFTTF S+ S R I++ Sbjct: 122 HTYLVKAHDFDVDRVKCGTQLFMGVKDFTTFSSM----SITNRKIEY------------- 164 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSV 244 +R VG+L +G K T D+ LQ P AP GL+ ++ Sbjct: 165 ----------VRRMVGALISLGLRKITEKDINVMLQVPSHHNWNPRASSAPANGLHLVNL 214 Query: 245 EYS 247 EY Sbjct: 215 EYD 217 >gi|110667083|ref|YP_656894.1| tRNA pseudouridine synthase A [Haloquadratum walsbyi DSM 16790] gi|109624830|emb|CAJ51238.1| tRNA-pseudouridine synthase [Haloquadratum walsbyi DSM 16790] Length = 276 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 101/252 (40%), Gaps = 43/252 (17%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH-----------GAGRTDSGVH 56 + Y+G + G+QRQ + ++E A+F + V + AGRTD+GV Sbjct: 10 LAYDGRPFSGFQRQPS----VPTVEDALFDALDSLDVFNRDTDSKPSGYAAAGRTDAGVS 65 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 ALRQ F+ P +ALN+ L S + + V FHA A++R+Y Y Sbjct: 66 ALRQTVGFECPSWCTP----RALNSELPTS--VRAWASADVQSGFHATHDALQRTYTY-- 117 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +L LD + AA+ L G+HDF F S + + FD Sbjct: 118 --------------YLYGPELDMNRLNTAAEILSGKHDFHNFTSDDDGTTRKLSITLEFD 163 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA--QDRKECGPLA 234 I R+ A F + IR + +L+ VG T L L Q + P A Sbjct: 164 ----DPFITARITADGFPRSLIRRLMSALRGVGSESMTIETLTGLLNTVPQTGPDGIPTA 219 Query: 235 PPEGLYFDSVEY 246 PE L V Y Sbjct: 220 SPEPLILTRVTY 231 >gi|307352726|ref|YP_003893777.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM 11571] gi|307155959|gb|ADN35339.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM 11571] Length = 261 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 32/244 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHA 57 +R ++ Y G+ ++G Q+Q +++G A +GRTD+GVHA Sbjct: 1 MRIAFLVSYIGTDFYGSQQQPGIRTVEGEFIGACIDLGLFSDWRDARFQFSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ FD P A+N K+ I + V + F+ RF R Y Y Sbjct: 61 RSQICAFDTD---YPERAVSAINR--KLPGDIRCRGWAGVPEGFNPRFEVSERIYRY--- 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + +LD M +AA++L G HDF+ F + + +P R I ++ Sbjct: 113 -------------FFPDGNLDWGKMSLAAEYLPGVHDFSRFARV--EGKNPERKIFLAEI 157 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G + EIR SFL +R +L LVG G + + AL D P AP Sbjct: 158 IPDKEGIIFEIR--GESFLWNMVRCISHALWLVGSGSESPEVISAALSNTDGPRF-PAAP 214 Query: 236 PEGL 239 PEGL Sbjct: 215 PEGL 218 >gi|118395831|ref|XP_001030261.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila] gi|89284557|gb|EAR82598.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila SB210] Length = 297 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 29/252 (11%) Query: 19 QRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA 78 +RQK +I ++++ + V + + RTD GV+A + F L R+ + Sbjct: 21 KRQKESININIKNQQSLNNFAKQEVFIKSSSRTDVGVNARKHPVQFVLQRDS-----KRG 75 Query: 79 LNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR-----QAPLALEKGRAWL 132 +N YL+ + D I+I + V +F R +++ Y++ I ++ + PL K ++W Sbjct: 76 VNFYLRDAGDQIAINEVYQVPMEFDVRNDCLQKEYVFYIDSQVGYNWENPLLFYK-QSWC 134 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRS---IHCQASSPIRTIDHFDVNSFGNL------ 183 IP +D + ++ A Q +GRH+F F S Q + ++ F++ + N Sbjct: 135 IPDQIDIDRLKQAFQKYLGRHNFYLFTSPEPFQTQFDLFEKELNSFEITHYPNEHFPKIQ 194 Query: 184 -IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-------QAQDRKECGPLAP 235 I I V + FL Q+R VG L K L L Q + R A Sbjct: 195 SIRISVKGKGFLKYQVRYMVGIAVLYAQKKIDENYLNYLLNPTGFIPQDERRNLIRLKAK 254 Query: 236 PEGLYFDSVEYS 247 PEGL+ V+Y Sbjct: 255 PEGLFLYDVQYD 266 >gi|26554422|ref|NP_758356.1| tRNA pseudouridine synthase A [Mycoplasma penetrans HF-2] gi|42559813|sp|Q8CXQ1|TRUA_MYCPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|26454432|dbj|BAC44760.1| tRNA pseudouridine synthase [Mycoplasma penetrans HF-2] Length = 241 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 8/241 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + Y + I Y+GS + G+ +QK+ + ++Q +EK + L + G+GRTD VHA+ Sbjct: 1 MTYKLKISYDGSFFRGYAKQKDENLITVQSELEKYLSLFFNTKISTFGSGRTDKYVHAID 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q F ++ P + LN+ L I + ++ V FHARFS ++Y+Y I T Sbjct: 61 QTVSFKCDSDYDPKSIQNFLNSKLT---NIYVNSIEKVPNSFHARFSIKSKTYMYVINTG 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ + KS+D + +G DF +F + + ++ RTI + Sbjct: 118 EFDV-FKQRYEYQYNKSIDIKKCEDIINLFIGTKDFLSFSTSKLENTT--RTIRWIRIIK 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + FL +R VG + + K T ++ + + P GL Sbjct: 175 KNKKIYIFINGEGFLRNMVRMIVGIILTYCENKITYQEVLDLFKNPKKGSAVIKVPGCGL 234 Query: 240 Y 240 Y Sbjct: 235 Y 235 >gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi] gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi] Length = 430 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 41/225 (18%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH--------GAGRTDSGVHALR 59 I Y G Y G +Q + + +IE +F + ++ GRTD GV AL Sbjct: 74 IAYLGFNYQGLSKQLHTPN---TIEHHLFEALKTLKLIEHEDNCEFTKCGRTDKGVSALG 130 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F+ + +N+ L D I +L V K F ARF ++R+Y Y Sbjct: 131 QVVSFNCRYNPKKNDYVRLINSLL--PDDIRVLAWCPVSKDFDARFGCLQRTYKY----- 183 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + I ++L+ E M+ AA H VG HDF F I+ + ++ R I ++ Sbjct: 184 -----------YFIRQNLNIEKMKQAAAHFVGEHDFRNFCKINEEVTNFRRRILSMEIIK 232 Query: 178 ----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + + + EI V SFL Q+R L L+G+GK Sbjct: 233 SDLLHQQHGNDEYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGK 277 >gi|313125232|ref|YP_004035496.1| pseudouridylate synthase i [Halogeometricum borinquense DSM 11551] gi|312291597|gb|ADQ66057.1| pseudouridylate synthase I [Halogeometricum borinquense DSM 11551] Length = 272 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 34/247 (13%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSGVHALRQV 61 I Y+G ++G+QRQ + +++ SI A+ + + AGRTD+GV AL Q Sbjct: 6 IAYDGRPFYGFQRQPSVPTVEDSIFDALRSLGVLDEDARKPTGYAAAGRTDAGVSALAQT 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD EW +A+NA ++ +++ + V ++FHA A RR+Y+Y + +A Sbjct: 66 VAFDCP-EW---CTPRAMNA--ELPESVRAWAAADVGERFHATHDAARRAYVYDLYAPEA 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 D + AA L G HD F ++ + +R + V + G Sbjct: 120 ----------------DESKAQAAADALTGEHD---FHNLTPDDTGTVRDV-TVSVEADG 159 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGL 239 + + V A F + +R + V G D+E L + E P AP E L Sbjct: 160 EFLVLSVAAGGFPYNLVRRLASIVHSVATGDRPLADIETVLGPETVPGPEGVPTAPAEPL 219 Query: 240 YFDSVEY 246 + V Y Sbjct: 220 VLERVVY 226 >gi|219853269|ref|YP_002467701.1| tRNA pseudouridine synthase ACD [Methanosphaerula palustris E1-9c] gi|254789642|sp|B8GFU5|TRUA_METPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219547528|gb|ACL17978.1| tRNA pseudouridine synthase A [Methanosphaerula palustris E1-9c] Length = 280 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 103/248 (41%), Gaps = 28/248 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA---IFLVTGEIVVVHG-AGRTDSGVHA 57 +R + Y+G+ + G Q Q +++G + A + L AGRTD GVHA Sbjct: 1 MRLAFQLSYDGNQFRGSQLQPAYRTVEGELITACQRVQLFDDPCKAGFALAGRTDRGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F P +ALN ++S + + V FH RF AI R+Y Y Sbjct: 61 RGQVGAFSTP---FPERAVEALNG--QLSPDLWCNGFAEVPPSFHPRFDAISRTYRY--- 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + LD M AA L+G HDF+ R + SPIRT+ V Sbjct: 113 -------------FFADWPLDIRAMDQAAAALIGTHDFS--RLARVREKSPIRTVKSARV 157 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + V A ++L +R +L L+G + +E+ L + R+ P AP + Sbjct: 158 FQDRGIPVFEVTAHTYLWHMVRCMAAALLLIGTHEREPELMERLLSGKCRRN-PPAAPAD 216 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 217 GLVLWDVD 224 >gi|2446915|dbj|BAA22474.1| tRNA pseudouridine synthase I [Synechococcus elongatus PCC 6301] Length = 81 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 41/63 (65%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVH QVA Sbjct: 16 RIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHRAAQVA 75 Query: 63 HFD 65 HF+ Sbjct: 76 HFE 78 >gi|146093784|ref|XP_001467003.1| pseudouridine synthase A-like protein [Leishmania infantum JPCM5] gi|134071367|emb|CAM70054.1| putative pseudouridine synthase A-like protein [Leishmania infantum JPCM5] Length = 499 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 95/216 (43%), Gaps = 36/216 (16%) Query: 49 GRTDSGVHAL--------RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 GRTD GV AL R D + P+ C LN L TI I+ ++VD Sbjct: 112 GRTDKGVSALGNALSLTARASCTADAEPQLPPLDYCSMLNNVLP--STIRIVGCALVDDT 169 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARFS + R+Y Y + + L+ E M+ AA +G H+F F Sbjct: 170 FDARFSCVHRTYRY----------------YFFHRGLNLEAMQEAAAFFLGTHNFRNFCK 213 Query: 161 IHC-QASSPIRTIDHFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + S+ +RT+ ++ L E+ + A SFL+ QIR + L LVG G Sbjct: 214 MDVVNVSNFVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVP 273 Query: 216 TDLEKALQAQDRKECGPLAPPEGLY-----FDSVEY 246 + ++ L+ DRK PLA L FD+V++ Sbjct: 274 SVVQTLLERGDRKPTYPLADGTPLVLWDCGFDNVQW 309 >gi|322501100|emb|CBZ36178.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 499 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 95/216 (43%), Gaps = 36/216 (16%) Query: 49 GRTDSGVHAL--------RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 GRTD GV AL R D + P+ C LN L TI I+ ++VD Sbjct: 112 GRTDKGVSALGNALSLTARASCTADAEPQLPPLDYCSMLNNVLP--STIRIVGCALVDDA 169 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARFS + R+Y Y + + L+ E M+ AA +G H+F F Sbjct: 170 FDARFSCVHRTYRY----------------YFFHRGLNLEAMQEAAAFFLGTHNFRNFCK 213 Query: 161 IHC-QASSPIRTIDHFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + S+ +RT+ ++ L E+ + A SFL+ QIR + L LVG G Sbjct: 214 MDVVNVSNFVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVP 273 Query: 216 TDLEKALQAQDRKECGPLAPPEGLY-----FDSVEY 246 + ++ L+ DRK PLA L FD+V++ Sbjct: 274 SVVQTLLERGDRKPTYPLADGTPLVLWDCGFDNVQW 309 >gi|237751255|ref|ZP_04581735.1| tRNA pseudouridine synthase A [Helicobacter bilis ATCC 43879] gi|229372621|gb|EEO23012.1| tRNA pseudouridine synthase A [Helicobacter bilis ATCC 43879] Length = 253 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 18/252 (7%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---VHGAGRTDSGVHALRQVAH 63 II Y+GS + G+ QK+ + S+ L +I + + G+GRTD VHA QV + Sbjct: 8 IIAYDGSKFCGFSHQKHTKGVL-SVANFFELTLQKIGIKAKIIGSGRTDKDVHATNQVIN 66 Query: 64 FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + ++P+ + K LN ++ + I + I D FHARFSA R +YR + QA Sbjct: 67 FH-AKLYMPLDKMKKLLND--RLYPFVLIKRIFIADSSFHARFSAKLR--IYRYVFTQAE 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVNSF 180 L + D ++ A +G HDF+ F+ + IRTI H Sbjct: 122 LLPFYSNYIAKVRHGDISLLQTALNEFIGTHDFSLFKKNGSETKDFIRTIVKAHIFPAKI 181 Query: 181 GNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ---DRKEC-GPLA 234 N+ + A FL +Q+R + + G+ T +L + +Q ++ C LA Sbjct: 182 HNISCFVAHIGANGFLRSQVRIMLKACFEFSLGRITLQNLVRQIQNDITLEKSLCVRELA 241 Query: 235 PPEGLYFDSVEY 246 P GLY + Y Sbjct: 242 PACGLYLHRIIY 253 >gi|326774000|ref|ZP_08233282.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] gi|326636139|gb|EGE37043.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] Length = 169 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 11/125 (8%) Query: 131 WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF---------DVNSFG 181 WL P +LD E M +A+ L+G HDF ++ + ++ IRT+ D Sbjct: 26 WL-PDALDVEAMDASARALLGEHDFLSYCKPR-EGATTIRTLRTLQWRRIEAGPDAGPES 83 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + VVA +F H+ +RS VG+ VG G+ T + L A+ R+ P+APP GL Sbjct: 84 GLVTLSVVADAFCHSMVRSLVGAGLAVGQGRKPVTWPRELLDARTRQSAAPVAPPHGLTL 143 Query: 242 DSVEY 246 + V Y Sbjct: 144 EEVTY 148 >gi|331703685|ref|YP_004400372.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802240|emb|CBW54394.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 251 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 15/246 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 Y+GS Y GW Q N SIQ ++ KAI + T + + GA +TD+ VHAL Q L+ Sbjct: 11 YDGSNYHGWINQTNAISIQATLNKAIKKVIKTDQFKTI-GASKTDTNVHALDQKVL--LI 67 Query: 68 REWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P++ KA+N L SD I IL+ VD F+ R + Y Y I Q + Sbjct: 68 IYFTPILEKFIKAINKALP-SD-IKILDAKFVDSNFNIR-EVEYKIYHYYINDYQFDIFT 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFDVNSFGN 182 + + + +D ++ +G H+F F + RTID V N Sbjct: 125 NRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLRINN 184 Query: 183 LIEIRVVARSFLHTQIRSFVGS-LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I A F+ QIR + + L + K ++T L + L+ +K + +GL Sbjct: 185 KVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLKGIGKK-TPFIIDAKGLVL 243 Query: 242 DSVEYS 247 ++++ Sbjct: 244 QKIQFN 249 >gi|4220415|gb|AAD12460.1| Homology to pseudouridine synthetase X02743 [Mycoplasma genitalium] Length = 102 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 2/104 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ Y+G + GW Q N ++IQG +E++ L+ G + V G+GRTD GVHA+ Q Sbjct: 1 MARYLGIVSYDGIYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 H D+ E +L + +N +K + L +V+ FHAR Sbjct: 61 TFHVDINGEINLNLLIRKINQLIKPHCIVK--TLVLVNDSFHAR 102 >gi|15669871|ref|NP_248685.1| tRNA pseudouridine synthase A [Methanocaldococcus jannaschii DSM 2661] gi|3915177|sp|Q59069|TRUA_METJA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1500579|gb|AAB99697.1| pseudouridylate synthase I (truA) [Methanocaldococcus jannaschii DSM 2661] Length = 259 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 37/242 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSI----QGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 Y + I Y+G + +Q+Q + ++ ++E+ FL + V++ GRTD GV AL Sbjct: 2 YILKIAYDGR--YSFQQQPHKQTVCDILLDALEETGFLAKKK--VIYSGGRTDKGVSALG 57 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +L +E P++ +NA LK I +L +D+ ++ R Y Y Sbjct: 58 NFVVVELKKE--PIL--SYINAKLK-DKGIWVLGYREIDEIPKVKY----RHYRY----- 103 Query: 120 QAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDV 177 ++P D + ++ A+ ++G H F + + SPIRTI + Sbjct: 104 ------------ILPNIGYDVDAIKEGAKKMIGTHSFHNLSKRDRTKEKSPIRTIYDIKI 151 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + ++ SFL +R VG+L LVG GK ++K L ++ +E P PPE Sbjct: 152 SENEFYLTVDIIGESFLWNMVRKIVGALDLVGRGKKPVEWIDKLLD-ENHREGVPTFPPE 210 Query: 238 GL 239 GL Sbjct: 211 GL 212 >gi|242062120|ref|XP_002452349.1| hypothetical protein SORBIDRAFT_04g024110 [Sorghum bicolor] gi|241932180|gb|EES05325.1| hypothetical protein SORBIDRAFT_04g024110 [Sorghum bicolor] Length = 201 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 5/167 (2%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + I + +S +FHAR S + Y Y+I A+ L+ M+ Sbjct: 5 LPPEIRVREISAARPEFHARTSTKSKVYRYKIYNEAIMDPFHNRYAYHSAYKLNPHAMQE 64 Query: 145 AAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 AA + VG HDFT+F + + + + I FDV G ++++ V FL+ Q+R+ V Sbjct: 65 AANYFVGTHDFTSFANAAHNDRERRSTKKITRFDVTEMGAVLQLEVEGTGFLYRQVRNMV 124 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEY 246 L VG + + +DRKE + APP GL SV Y Sbjct: 125 ALLLQVGKEALPPDIVPAIIAVRDRKELAKVALSAPPHGLCLMSVNY 171 >gi|154149764|ref|YP_001403382.1| tRNA pseudouridine synthase ACD [Candidatus Methanoregula boonei 6A8] gi|153998316|gb|ABS54739.1| tRNA pseudouridine synthase A [Methanoregula boonei 6A8] Length = 276 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 28/242 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHA 57 +R + Y G+ ++G Q+Q++ +++G +A AGRTD GVHA Sbjct: 15 VRLACRVSYLGTRFYGSQQQESSRTVEGEFIEACRRLALFSDWRTAGFASAGRTDRGVHA 74 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F P +ALN+ ++ I ++V FH R+ A R+Y Y Sbjct: 75 CGQVIAFSTQ---TPDRARQALNS--QLPPDIWCTATAVVPDHFHPRYDARSRTYRY--- 126 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D M AA+ G H+FT F + +P R I + Sbjct: 127 -------------YFGEPPRDPVAMETAAREFSGDHNFTNFARVG--DKNPWRKILEIRI 171 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G+ + V A+SFL Q+R + G G+ + + L + P AP E Sbjct: 172 GTEGSFTYLEVKAQSFLWHQVRCMAAAALSAGMGEQDADGIRLLLNEAASRPIQP-APAE 230 Query: 238 GL 239 GL Sbjct: 231 GL 232 >gi|281201760|gb|EFA75968.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500] Length = 531 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 122/272 (44%), Gaps = 42/272 (15%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVH------GAGRTDSGVHALRQ 60 Y+G+ Y G Q+ +I+ +EKAIF V G + + H RTD GV A+R Sbjct: 138 YSGTNYRGMQKNPGFPTIEDELEKAIFKVGGISPDNMYCHRKIDWIRCARTDKGVSAIRN 197 Query: 61 VAHFDLVREWVPVILCK---ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + L E+ P L + A+NA L + I + + V+ FHA+ RRSY+Y Sbjct: 198 MVSCKL--EYDPPTLDEMKTAINAQL--PNDIRVFAIKRVNNTFHAKNCVDRRSYIYITP 253 Query: 118 TRQAPLALEKGRAWLIP---KSLDCENMRIAA--QHLVGRHDFTTFRS-IHCQASSPIRT 171 T A E A P K + E R+ + + VG + + S S +RT Sbjct: 254 T----FAFEPIFANNKPAQYKFDELERTRLNSLLKLFVGTRKYHNYTSKKESNDPSAVRT 309 Query: 172 IDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQ 225 ++ F+ +N L+ I +V +SF+ QIR +G +++ + G + ++ ++A ++ Sbjct: 310 VNSFECSEPFMNEGVELVAINIVGQSFMLHQIRKMIGVTMQFMRKGFFADSESDEAALSK 369 Query: 226 DRKECG----------PLAPPEGLYFDSVEYS 247 +K P+AP GL D Y Sbjct: 370 MKKLVEATFAHRQFNLPMAPGAGLLLDRCLYD 401 >gi|256810921|ref|YP_003128290.1| tRNA pseudouridine synthase A [Methanocaldococcus fervens AG86] gi|256794121|gb|ACV24790.1| tRNA pseudouridine synthase A [Methanocaldococcus fervens AG86] Length = 259 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 37/242 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSI----QGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 Y + I Y+G + +Q+Q + ++ ++E FL +I+ + GRTD GV AL Sbjct: 2 YILKIAYDGR--YSFQQQPHKQTVCDILLDTLENTDFLAKKKII--YSGGRTDKGVSALG 57 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +L +E P++ +NA LK S I +L +D+ ++ R Sbjct: 58 NFVVLELKKE--PIL--SYINAKLK-SKGIWVLGYREIDEIPKVKYRYYR---------- 102 Query: 120 QAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDV 177 +++P + + + ++ A+ ++G H F + + SPIRTI + Sbjct: 103 -----------YILPNINYNVDAIKEGAKKMIGTHSFHNLSKRDRTKEKSPIRTIYDIKI 151 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + I ++ SFL +R VG+L L+G GK ++K L ++ +E P PP+ Sbjct: 152 SENEFYLTIDIIGESFLWNMVRKIVGALDLIGRGKKPVEWIDKLLD-ENYREGVPTFPPD 210 Query: 238 GL 239 GL Sbjct: 211 GL 212 >gi|126180241|ref|YP_001048206.1| tRNA pseudouridine synthase ACD [Methanoculleus marisnigri JR1] gi|166228738|sp|A3CXX4|TRUA_METMJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125863035|gb|ABN58224.1| tRNA pseudouridine synthase A [Methanoculleus marisnigri JR1] Length = 270 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 94/242 (38%), Gaps = 29/242 (11%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHALRQVAHFD 65 Y G +FG Q Q + +++G A L+ AGRTD GVHA QV F Sbjct: 9 YFGDRFFGSQMQPDLCTVEGEFIGACRLLRLFDDWREANFATAGRTDRGVHARSQVCSFL 68 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P +ALN L I + FH R+SA+ R+Y Y AP Sbjct: 69 TDK---PERAIEALNRVLPAD--IWCTGWAEAPDGFHPRYSAVSRTYRYYF---SAP--- 117 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 D M AAQ +GRHDF+ F +P R I V G Sbjct: 118 -----------GDAAAMHEAAQEFLGRHDFSAF--ARAGDRNPERRILASRVFIDGEFAV 164 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 V SFL +R L VG G+ + ++ + L + APPEGL ++ Sbjct: 165 FEVTGESFLWNMVRCMATMLGRVGRGEAEAGEIARLLTGPVERRVA-AAPPEGLILWDID 223 Query: 246 YS 247 Y Sbjct: 224 YG 225 >gi|57167827|ref|ZP_00366967.1| tRNA pseudouridine synthase A [Campylobacter coli RM2228] gi|57020949|gb|EAL57613.1| tRNA pseudouridine synthase A [Campylobacter coli RM2228] Length = 240 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 103/242 (42%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + S+Q +++ A+ + G V A RTD GVHA VA + Sbjct: 5 IIFSYDGSKFLGSATQPHKKSVQDALQDALSHL-GIFSSVLMASRTDKGVHASYAVACVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + L K +N + I + NL I+ F R+ R Y Y I Sbjct: 64 CGEHFRDLNYLKKQINKF--SHPFIHVKNLKIMPSNFEVRYDVKSREYRY-IFYHGVYNP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 P +D + Q+ VG DF F + IR I S+ + Sbjct: 121 FLASYVHFYP-FIDVLKADLVLQNFVGIKDFKFFCKSGGDNKTTIREIFLAKAYSYKDFT 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R A FL QIR V S+ V + K + +L++ ++A+ ++ LAPP GLY + Sbjct: 180 IFRFKANGFLRAQIRLMVASVLKVLENKMSIEELKEQIEAK-KQYNHFLAPPCGLYLSRI 238 Query: 245 EY 246 Y Sbjct: 239 SY 240 >gi|222480083|ref|YP_002566320.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239] gi|222452985|gb|ACM57250.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239] Length = 293 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 30/252 (11%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVV------VHGAGRTDSGVHA 57 + Y+G Y G+QRQ + ++++G++ +A+ L G+ AGRTD+GV A Sbjct: 13 VAYDGREYAGFQRQPHATTVEGTLLRALAKHGILDRGDGPTHATPPGYAAAGRTDAGVSA 72 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + Q F+ +W + +A N +L S + + + V FHA A+RR+Y Y + Sbjct: 73 VAQTVAFE-APDW---LTPRAFNGHLPGS--VRVWAAADVPAGFHATHDAVRRTYRYHLY 126 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 AP +E+ ++D +R A L G DF S + T Sbjct: 127 ---APARVEETDH---DHAVDDGRVRDALARLSGEQDFHNLTSDETGTVRDLTTT----A 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD---RKECGPLA 234 G+++ + V A F +R V +++ VG G + +++ L ++ GP A Sbjct: 177 TREGDILVVEVSAGGFPRALVRRLVAAVRAVGRGTADPSLIDRLLASEPISGEFGIGP-A 235 Query: 235 PPEGLYFDSVEY 246 PPE L V Y Sbjct: 236 PPEPLVLWDVSY 247 >gi|71663014|ref|XP_818505.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70883761|gb|EAN96654.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 409 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 104/245 (42%), Gaps = 36/245 (14%) Query: 8 IEYNGSGYFGWQRQKNGSS-----IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + Y+G Y G +Q+ S+ + +++ + + + GRTD GV AL V Sbjct: 26 LAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVSALGNVF 85 Query: 63 HFDL-VREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 + W P+ C LN+ L + TI I+ + VD F ARFS + R+Y Y Sbjct: 86 SLTVRASSWPTDSPQKPPLDYCAMLNSALPV--TIRIVGWAYVDDTFDARFSCVGRTYRY 143 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS----PIR 170 + + L+ E M AA L G H+F F S +R Sbjct: 144 ----------------YFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSNYERDVR 187 Query: 171 TIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 ++ F +F L+ + + A SFL+ QIR + L LVG G + + L+ DRK Sbjct: 188 SVGIFASEAFPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLERGDRKP 247 Query: 230 CGPLA 234 PLA Sbjct: 248 VYPLA 252 >gi|271962666|ref|YP_003336862.1| tRNA-pseudouridine synthase I [Streptosporangium roseum DSM 43021] gi|270505841|gb|ACZ84119.1| tRNA-pseudouridine synthase I [Streptosporangium roseum DSM 43021] Length = 360 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 14/165 (8%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIA 145 + + +++ + F ARFSA+ R Y YR+ AP ++ R + + LD + + A Sbjct: 182 VRVYRVTVAPRGFDARFSAMSRRYAYRV--SDAPGGVDPLRRREVIWYGRPLDVDRLNAA 239 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 A L+G HDF F + ++ IR + D +++ VVA +F H+ +R+ VGSL Sbjct: 240 AAVLLGEHDFAAF-CKKREGATTIRELQRLDWVRQDDILVATVVADAFCHSMVRALVGSL 298 Query: 206 KLVGDGK----WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+G+ W L +A+ R +AP GL + V Y Sbjct: 299 LPVGEGRLAVDWPGRVLTRAV----RDSGVHVAPAHGLCLEEVRY 339 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHAL 58 M+R + + Y+G+ + GW +Q ++QG IE+A+ L E V+ AGRTD+GVHA Sbjct: 1 MVRLRLDLAYDGTDFSGWAKQPGRRTVQGEIEEALGKILRLPEPPVLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDL 66 QVAH DL Sbjct: 61 GQVAHVDL 68 >gi|289597197|ref|YP_003483893.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Aciduliprofundum boonei T469] gi|289534984|gb|ADD09331.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Aciduliprofundum boonei T469] Length = 253 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 102/243 (41%), Gaps = 45/243 (18%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Y+G+ ++G+QRQK+ +++G I KA L I + A RTD GV AL V Sbjct: 7 YDGTRFYGYQRQKDVPTVEGEILKA--LENMGIKNLKSASRTDRGVSALGNVI------- 57 Query: 70 WVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 W+ L LNA LK S NL I + R++ IR Sbjct: 58 WIKTDIDGKELIGRLNANLKHIYFHSFANLDI-----NPRYARIRWY------------- 99 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 R L+ D + ++ AA G HDF F + I+ I DVN G++I Sbjct: 100 ----RYHLLDMGQDMDRLKEAAMIFQGEHDFRNFTRVRKNTVIEIKKI---DVNKRGSII 152 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I R++L IR V +++ GK ++ RK G +APPE L + Sbjct: 153 TIDFYGRNYLWNLIRRIVAAMETYSLGKEFGQEIFTI-----RKNFG-IAPPEPLILMDI 206 Query: 245 EYS 247 +Y Sbjct: 207 QYD 209 >gi|302854296|ref|XP_002958657.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] gi|300255982|gb|EFJ40260.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] Length = 188 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 17/171 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 +C ++ Y+G + G+Q Q ++QG +E+ + + GA RTD G HA QV Sbjct: 12 WCQVVAYDGCEFAGFQFQAGKVRTVQGELERGAKRLFHGCSRMVGASRTDGGAHAYGQVV 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ + AL + + +L LS + F + FS+ ++YLY+ Sbjct: 72 HFDVYGT-RDSLESDALYYNSFLPPDVRVLGLSYAEDGFDSHFSSCGKTYLYKFAAGLPD 130 Query: 123 LALEKGRAWLIPK---------------SLDCENMRIAAQHLVGRHDFTTF 158 K R W+ + LD M+ AA L+GRHDF+ F Sbjct: 131 PLQSKYRWWVYDRWCERSRGKPGKLSDVELDVGLMQQAADMLLGRHDFSAF 181 >gi|289581033|ref|YP_003479499.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Natrialba magadii ATCC 43099] gi|289530586|gb|ADD04937.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Natrialba magadii ATCC 43099] Length = 293 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 105/262 (40%), Gaps = 40/262 (15%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSGVHALRQV 61 + Y+G+GY+G+QRQ + +++ ++ A+ + + AGRTD+GV AL Q Sbjct: 6 LAYDGTGYYGFQRQPDVPTVEDAMFDALRALDVLAPDADKPAGYAAAGRTDAGVSALAQT 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI----I 117 F+ +W + +A N L I + +FHA A R Y Y + Sbjct: 66 VAFE-APDW---LTPRAFNGELPAD--IRAWAAADAPDEFHATHHAREREYTYYLYAPPA 119 Query: 118 TRQAPLALEKGR----AWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTI 172 AP A + + ++D + + A L G HDF H SP+ Sbjct: 120 NDDAPPASDTDEDHAGTPVTAHTVDDDRFQAACDALSGPHDFHNLTPDDHNTERSPV--- 176 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + G+ + V A F +R V + VG G+ +E+AL E P Sbjct: 177 --LESTRDGHFRILTVTAGGFCRELVRRLVSLARDVGTGEANLQTIERAL------ESDP 228 Query: 233 L--------APPEGLYFDSVEY 246 L APPE L VEY Sbjct: 229 LPGHEGIAPAPPEPLVLTDVEY 250 >gi|153951132|ref|YP_001398256.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. doylei 269.97] gi|166228691|sp|A7H426|TRUA_CAMJD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|152938578|gb|ABS43319.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. doylei 269.97] Length = 241 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 104/248 (41%), Gaps = 9/248 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q + +A+ + G + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSATQPHKKGVQDVLSEALSHL-GIFSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA + +V + L K LN + I I + V F RF R Y Y I + Sbjct: 60 VASVECGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + PK D VG+ D F + +R I + Sbjct: 117 SSYSPFMASYVYFYPK-FDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYA 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP-LAPPEG 238 + + A FL QIR V S+ V +GK + +L++ ++A +K+C LAPP G Sbjct: 176 YKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEA--KKQCNHFLAPPNG 233 Query: 239 LYFDSVEY 246 LY + Y Sbjct: 234 LYLSRICY 241 >gi|297789719|ref|XP_002862797.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp. lyrata] gi|297308524|gb|EFH39055.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp. lyrata] Length = 244 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 8/175 (4%) Query: 78 ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL 137 ALN L I + LS +FHARFSA + Y Y+I ++ A+ L Sbjct: 42 ALNGLL--PKDIRVRELSAAVPEFHARFSAQSKVYRYQIYNDTFMDPFQRYWAYHCAYKL 99 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 + MR VG HD + F + + P+++I F V G+L+++ V FL+ Sbjct: 100 NASKMRETVDLFVGMHDVSAFANATREDGVPDPLKSISRFYVIQMGSLLQLEVEGSGFLY 159 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA----PPEGLYFDSVEY 246 Q+R+ V L +G S + L+ +DR+ PP GL SV+Y Sbjct: 160 RQVRNMVALLIHIGKESLDSDIVPMILETKDRRVLAKYTTLPVPPHGLCLVSVKY 214 >gi|167967303|ref|ZP_02549580.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] Length = 243 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 6/137 (4%) Query: 113 LYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 +YR+ T AP +E +A I P+ LD + M A++ L+G HDF F H + ++ I Sbjct: 1 MYRLST--APYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAF-CRHREGATTI 57 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R + D + G L+ V A +F + +RS VG+L VG+ + +T + L A R Sbjct: 58 RDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSS 117 Query: 230 CGPLAPPEGLYFDSVEY 246 +AP GL V+Y Sbjct: 118 DFAVAPAHGLTLIQVDY 134 >gi|119872780|ref|YP_930787.1| tRNA pseudouridine synthase ACD [Pyrobaculum islandicum DSM 4184] gi|166228754|sp|A1RU12|TRUA_PYRIL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119674188|gb|ABL88444.1| Pseudouridylate synthase [Pyrobaculum islandicum DSM 4184] Length = 255 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 109/244 (44%), Gaps = 36/244 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAG-RTDSGVHALRQVA 62 Y I Y+G+ ++G+ S+E A+ V GEI+ G G RTD GV A VA Sbjct: 3 YLYRIAYDGTLFYGFTGHSR------SLEPALKRVFGEIL---GRGSRTDPGVSA---VA 50 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + +V + +P+ L + K+ + ++ V + F+ R + R YLY AP Sbjct: 51 NTVMVSQKLPIALVNS-----KLPRGVWAWAIAEVPQSFNPRRAKFRH-YLY-----VAP 99 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E D +M AA+ L G HDF +F + S I T+ V G+ Sbjct: 100 HWGE-----------DLGSMHEAAEVLAGTHDFASFIQRRGEKISTIATVMEIKVELRGD 148 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI + V R F + IR ++ G G + D+ + L+ + R P AP EGL Sbjct: 149 LIYMHFVGRGFKNKMIRKLAWAILAAGRGIFNIRDIRELLE-RPRPGVVPSAPAEGLVLL 207 Query: 243 SVEY 246 ++EY Sbjct: 208 NIEY 211 >gi|169838040|ref|ZP_02871228.1| tRNA pseudouridine synthase A [candidate division TM7 single-cell isolate TM7a] Length = 154 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 4/154 (2%) Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 ++ F+ARF A R+YLY + + E + + ++ E + +G+HDF+ Sbjct: 1 ANENFNARFDAKNRAYLYIMRAEKDITPFESNYITGLKEKVEAEKFQKIMDSFIGKHDFS 60 Query: 157 TFRSIHCQASSPIRTIDH----FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +F +P+R I + +D N + I + FL T +R +GS V GK Sbjct: 61 SFMKKDKAYRNPVREIFYIKCYYDKKFGKNQVNIEICGNGFLKTMVRIMIGSALTVYFGK 120 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + K L+ D LAP EGLY V Y Sbjct: 121 EKEDYIIKRLKNPDADNKKILAPSEGLYLYKVNY 154 >gi|320165424|gb|EFW42323.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 387 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%) Query: 3 RYCMIIEYNGSGYFG----WQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 R+ + +EY+G+ + G + S+ +++AI T + V + RTD+GVHAL Sbjct: 79 RFLLAVEYDGTAFSGVAASPDEPPDRPSVGSVLDRAIAQATRQDARVTFSSRTDAGVHAL 138 Query: 59 RQVAHFDL-----------VREWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARF 105 H D+ ++W P+ L A+N + K+ +S+ + V +Q HARF Sbjct: 139 WNTCHVDIEPRTRRGDLMTQQQWTPLALGSAINYFSRGKVPYPMSVRAVCAVPEQVHARF 198 Query: 106 SAIRRSYLYRIITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 +A +R Y+YR++ ++ A + R L +D E++ A TT R I Q Sbjct: 199 NATQRVYIYRVVVGESSAASVFDLRYHLTAAPID-ESLVQAR---------TTTRHI-SQ 247 Query: 165 ASSPI--RTIDHFDVNSFGNLIEIRVVARS-------FLHTQIRSFVGSLKLVGDGKWTS 215 S I D+ NS + + VA + FL+ Q+R VG + V GK T Sbjct: 248 FSVQIDKHKTDNPWANSLPDALSKPTVALTFTIRGSGFLYHQVRIMVGHVLSVASGKSTL 307 Query: 216 TDL 218 DL Sbjct: 308 ADL 310 >gi|157872401|ref|XP_001684749.1| pseudouridine synthase A-like protein [Leishmania major strain Friedlin] gi|68127819|emb|CAJ06260.1| putative pseudouridine synthase A-like protein [Leishmania major strain Friedlin] Length = 498 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 94/216 (43%), Gaps = 36/216 (16%) Query: 49 GRTDSGVHAL--------RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 GRTD GV AL R D + P+ C LN L TI I+ ++VD Sbjct: 112 GRTDKGVSALGNAFSLTARASCTGDAEPQLPPLDYCSMLNNVLP--STIRIVGCALVDDA 169 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARFS + R+Y Y + + L+ M+ AA +G H+F F Sbjct: 170 FDARFSCVHRTYRY----------------YFFHRGLNLAAMQEAAAFFLGTHNFRNFCK 213 Query: 161 IH-CQASSPIRTIDHFDVNSFGNLIE----IRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + S+ +RT+ ++ L E + + A SFL+ QIR + L LVG G Sbjct: 214 MDVVNVSNFVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVP 273 Query: 216 TDLEKALQAQDRKECGPLAPPEGLY-----FDSVEY 246 + ++ L+ DRK PLA L FD+V++ Sbjct: 274 SVVQTLLELGDRKPTYPLADGTPLILWDCGFDNVQW 309 >gi|167377399|ref|XP_001734387.1| tRNA pseudouridine synthase [Entamoeba dispar SAW760] gi|165904128|gb|EDR29463.1| tRNA pseudouridine synthase, putative [Entamoeba dispar SAW760] Length = 366 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 33/204 (16%) Query: 23 NGSSIQGSIEKAIF----LVTGEIVVVHGAGRTDSGVHALRQVAHF----DLVREWV--- 71 N +I+ + KA+F + + + GRTD GV A QV +L E + Sbjct: 70 NDGTIEYQLFKALFKTRLIQNTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYT 129 Query: 72 ----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + C+ LN L I I L V F++RFS R+Y Y Sbjct: 130 KREGELDYCRMLNGLLPID--IRCLGWCGVPDDFNSRFSCQSRTYHY------------- 174 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + P S D M+ AAQ +G HDFT F IR ++ F+V L Sbjct: 175 ---YFDPSSYDVPKMKEAAQLFLGEHDFTNFCKKDPAVPHCIRRVNSFEVEEINGLSRFV 231 Query: 188 VVARSFLHTQIRSFVGSLKLVGDG 211 V +F+ Q+R VG+L +G G Sbjct: 232 VCGTAFVWHQVRYMVGALFAIGQG 255 >gi|255322348|ref|ZP_05363494.1| tRNA pseudouridine synthase A [Campylobacter showae RM3277] gi|255300721|gb|EET79992.1| tRNA pseudouridine synthase A [Campylobacter showae RM3277] Length = 317 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 8/223 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q Q + + ++ ++ A+ V G + + RTD GVHA QV Sbjct: 1 MRLKLVFSYDGSKFQGSQTQPHENGVEDALGVALAHV-GIFSKIISSSRTDKGVHANNQV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + + ++L I + +S V FH R+ A R+Y Y I + Sbjct: 60 ACVECGEHFKDFVRLRSL-VNRHAHPAIHVKFISRVKDGFHPRYDATARAYRYVINHGEF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + IPK D VG HDF+ F + SP+R + G Sbjct: 119 SPFLSPYETF-IPK-FDLNLANELLALFVGEHDFSAFMKLGSDVKSPVRRVSKAFCYERG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGS----LKLVGDGKWTSTDLEK 220 I A FL Q+R V S L+L GK+ T +++ Sbjct: 177 ERTIIVFKANGFLRAQVRLMVASVLKALELAKSGKFRQTQVQE 219 >gi|313229675|emb|CBY18490.1| unnamed protein product [Oikopleura dioica] Length = 402 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 103/261 (39%), Gaps = 43/261 (16%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH--------GAGRTDSGVHALRQV 61 Y+G+ Y G QR + + +IE IF VV GRTD GVHA+ V Sbjct: 73 YDGTKYNGLQRSPVPAG-KTTIEDVIFDAILRTKVVDDIGTADYIAGGRTDKGVHAVNNV 131 Query: 62 AHF--------DLVREWVPV---ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 D + E V V +N L D I I + + + F ARFS R Sbjct: 132 ISLFVNSRLSEDEINENVTVGERNFVAIINRQL--PDDIWITSWAPISFDFSARFSCKSR 189 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y Y LD E M+ AA +L+G HDF F + + +R Sbjct: 190 HYNY----------------IFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLERQNTVR 233 Query: 171 TIDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD- 226 D+ N+ + + A FL+ QIR + L LVG+ ST +++ L + Sbjct: 234 VCFAADIKQVPNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLDVEKY 293 Query: 227 -RKECGPLAPPEGLYFDSVEY 246 R+ A P+GL EY Sbjct: 294 PRRPSYKYANPDGLVLIDCEY 314 >gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica] Length = 402 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 103/261 (39%), Gaps = 43/261 (16%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH--------GAGRTDSGVHALRQV 61 Y+G+ Y G QR + + +IE IF VV GRTD GVHA+ V Sbjct: 73 YDGTKYNGLQRSPVPAG-KTTIEDVIFDAMLRTKVVDDIGTADYIAGGRTDKGVHAVNNV 131 Query: 62 AHF--------DLVREWVPV---ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 D + E V V +N L D I I + + + F ARF+ R Sbjct: 132 ISLFVNSRLSEDEINENVTVGERNFVAIINRQL--PDDIWITSWAQISSDFSARFNCKSR 189 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y Y LD E M+ AA +L+G HDF F + + +R Sbjct: 190 HYNY----------------IFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLERQNTVR 233 Query: 171 TIDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD- 226 D+ N+ + + A FL+ QIR + L LVG+ ST +++ L + Sbjct: 234 VCFAADIKQVPNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLDVEKY 293 Query: 227 -RKECGPLAPPEGLYFDSVEY 246 R+ A P+GL EY Sbjct: 294 PRRPSYKYANPDGLVLIDCEY 314 >gi|108760886|ref|YP_632235.1| putative tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] gi|108464766|gb|ABF89951.1| putative tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] Length = 281 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 108/258 (41%), Gaps = 23/258 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 I + I Y G + G+QRQ G ++Q ++E+A+ V G + +GRTD GVHA QV Sbjct: 9 IPVALWIWYRGGIFRGFQRQPEGPTVQSALEEALRSV-GVPATLMPSGRTDRGVHARMQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ--FHARFSAIRRSYLYR---- 115 L L K L L L L V + FHA++SA + Y YR Sbjct: 68 VSVRLEAGDSAESLEKRLPPRLPPG-----LGLCGVRRPTSFHAQWSACGKEYRYRFQLG 122 Query: 116 --IITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP--IR 170 ++ AP AL+ L ++ E + + G DF F + SSP R Sbjct: 123 GAVMPEWAPYALDVSAEPLLQATAVTPERLAALLRSAEGTRDFIAFH----EKSSPRKPR 178 Query: 171 TIDHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T++ +++ G L E R+ F QIR VGS V G AL+ E Sbjct: 179 TLESATLHALGGGLYEARLRGDGFARYQIRYLVGSALKVAAGLLPEEAWLAALETGQAME 238 Query: 230 CGPLAPPEGLYFDSVEYS 247 G AP GL V Y Sbjct: 239 -GFKAPAHGLVLWEVRYP 255 >gi|296187337|ref|ZP_06855732.1| tRNA pseudouridine synthase A domain protein [Clostridium carboxidivorans P7] gi|296047859|gb|EFG87298.1| tRNA pseudouridine synthase A domain protein [Clostridium carboxidivorans P7] Length = 120 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 7/107 (6%) Query: 6 MIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+I+Y+GS Y GWQ+Q + S+IQ IE + +TGE + V G GRTD+GVHA Sbjct: 6 MLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGVHAENY 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 VA+F + K L +L + I + +L ++FHAR++A Sbjct: 66 VANFHTDSILTVEDMLKYLYEFL--PEDIVVKSLRDTSERFHARYNA 110 >gi|72390247|ref|XP_845418.1| pseudouridine synthase A-like protein [Trypanosoma brucei TREU927] gi|62360588|gb|AAX81000.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei] gi|70801953|gb|AAZ11859.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 428 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 100/245 (40%), Gaps = 36/245 (14%) Query: 8 IEYNGSGYFGWQRQKNGSS-----IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + Y+G Y G RQ + + ++E+ F+ GRTD GV AL V Sbjct: 31 LAYHGHIYCGLVRQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVSALGNVV 90 Query: 63 HF-DLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 F W P+ C+ LN L TI I+ S V+ F ARFS R+Y Y Sbjct: 91 SFTSRASSWATDEQQQPPLDYCEKLNNVL--PPTIRIVGWSYVNADFDARFSCTGRTYRY 148 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTID 173 R L+ E MR A +L G H+F F ++ ++ R + Sbjct: 149 YFCNR----------------GLNLEAMRKAVGYLKGVHNFRNFCKTDVVNVNNYERHVR 192 Query: 174 HFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 H D+ L ++ + A SFL+ QIR + L LVG +++ L DRK Sbjct: 193 HADIVGSDMLPDLVSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLDCGDRKP 252 Query: 230 CGPLA 234 PLA Sbjct: 253 VYPLA 257 >gi|305432148|ref|ZP_07401314.1| tRNA pseudouridine synthase A [Campylobacter coli JV20] gi|304444813|gb|EFM37460.1| tRNA pseudouridine synthase A [Campylobacter coli JV20] Length = 240 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + S+Q +++ A+ + G V A RTD GVHA VA + Sbjct: 5 IIFSYDGSKFLGSATQPHKKSVQDALQDALSHL-GIFSSVLMASRTDKGVHASYAVACVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + L K +N + I + NL I+ F R+ R Y Y I Sbjct: 64 CGEHFRDLNYLKKQINKF--SHPFIHVKNLKIMPSNFEVRYDVKSREYRY-IFYHGVYNP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 P +D + Q+ VG DF F + IR I S+ + Sbjct: 121 FLASYVHFYP-FIDVLKADLVLQNFVGIKDFKFFCKSGGDNKTTIREIFLAKAYSYKDFT 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R A FL QIR V S+ V + K + +L++ ++ + ++ LAPP GLY + Sbjct: 180 IFRFKANGFLRAQIRLMVASVLKVLENKMSIEELKEQIEVK-KQYNHFLAPPCGLYLSRI 238 Query: 245 EY 246 Y Sbjct: 239 SY 240 >gi|222823975|ref|YP_002575549.1| tRNA pseudouridine synthase A [Campylobacter lari RM2100] gi|222539197|gb|ACM64298.1| tRNA pseudouridine synthase A [Campylobacter lari RM2100] Length = 244 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+GS + G Q + S+Q ++E+A+ + G A RTD GVHA VA Sbjct: 5 LTFSYDGSKFQGSATQPHKLSVQDALEQALSHL-GIYNKTLFASRTDKGVHANNGVACVK 63 Query: 66 LVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + ++ K +N + I I ++ V + F RF +R+Y Y II+ + Sbjct: 64 VGEHFKDLLYLKNKINHF--AHPFIHIKHIQKVHENFQVRFDVKKRAYRY-IISHERYNP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 PK ++ + + A G HDF F+ + R I V ++ N Sbjct: 121 FLASYVHFYPK-INIQLAKKIASLFEGEHDFKLFQKEGSDNKTTTRIIYKSKVYTYKNCT 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 A FL +QIR + S+ V + K + +L++ + A+ + LAP GLY + Sbjct: 180 IFYFEANGFLRSQIRMMIASILKVLEKKISQENLKEQIDAK-KAHIRLLAPASGLYLSKI 238 Query: 245 EY 246 Y Sbjct: 239 SY 240 >gi|300709217|ref|XP_002996775.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01] gi|239606099|gb|EEQ83104.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01] Length = 313 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 23/218 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF- 64 ++I Y+G Y G K+G SI I+ A+ L T +V+ AGRTD GV A+ VA Sbjct: 41 LLISYHGEKYRGLAECKDGDSIGNRIKNALLLSTLADHIVY-AGRTDKGVSAIGMVASVK 99 Query: 65 --DLVREWVPVILCKA-----------LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 L+RE LN YL + I ++ + V+ F ARF+ I+R Sbjct: 100 IKSLLRENTSRYFLNDDDNHEFNYQAILNNYL--PEDIRVIGWAPVEDGFSARFTCIKRK 157 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y Y P K + L D M Q ++ +F +++ RT Sbjct: 158 YRYYFTN---PFVKIKNQIRL---KYDINKMEEMCQKILTLKNFYNLSKHSDKSARYNRT 211 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 +D + G+L + + A+SFLH +R L++ G Sbjct: 212 VDICQIIKEGDLYYLDIQAKSFLHNMVRKIFWVLEMAG 249 >gi|256384180|gb|ACU78750.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri str. GM12] gi|256385012|gb|ACU79581.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri str. GM12] gi|296455760|gb|ADH21995.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 251 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 15/246 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 Y+GS Y GW Q N SIQ ++ KAI + T + + GA +TD+ VHAL Q L+ Sbjct: 11 YDGSNYHGWINQTNAISIQTTLNKAIKKVIKTDQFKTI-GASKTDTNVHALDQKVL--LI 67 Query: 68 REWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P++ KA+N L SD I IL+ VD F+ R + Y Y I + Sbjct: 68 IYFTPILEKFIKAINKALP-SD-IKILDAKFVDPNFNIR-EVEYKIYHYYINDHHFDIFT 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFDVNSFGN 182 + + +D ++ +G H+F F + RTID V N Sbjct: 125 NRYEYFWKHSKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLRINN 184 Query: 183 LIEIRVVARSFLHTQIRSFVGS-LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I A F+ QIR + + L + K ++T L + L+ +K + +GL Sbjct: 185 KVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLKGIGKK-TPFIIDAKGLVL 243 Query: 242 DSVEYS 247 ++++ Sbjct: 244 QKIQFN 249 >gi|291550669|emb|CBL26931.1| Pseudouridylate synthase [Ruminococcus torques L2-14] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 32/231 (13%) Query: 6 MIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + ++Y+G+ Y GW+R + N ++ IE + VTG V + RT+ GVHA Sbjct: 6 LTLQYDGTRYLGWKRPEKDHNDRTVSYKIENVLEKVTGTPVTLFSGVRTEPGVHARNLTV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI------ 116 +F + P LN YL I++L+ ++F A +A +Y Y + Sbjct: 66 NFLTESQLTPAEFKTVLNQYL--PQDIAVLDAVSTPERFRADLNAREITYEYAMDLSPIY 123 Query: 117 -------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 + + L + +P L M AA L+G HDF F SI Sbjct: 124 DLFHKNYRGRLTDLLSDSLFDLPPEQTAELPNIL---LMETAAHSLLGTHDFKHFSSIRK 180 Query: 164 QASS--PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + + I+TI S + IR+ A FL+ +G+L +G GK Sbjct: 181 KKGTEKEIKTITFVTEES---TLYIRMTANDFLYQMAPFILGTLLDIGIGK 228 >gi|316969725|gb|EFV53781.1| tRNA pseudouridine synthase A [Trichinella spiralis] Length = 380 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 107/261 (40%), Gaps = 64/261 (24%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK---------------AIFLVT--GEIV 43 M RY Y GS + G Q Q N ++QG +E A+ L++ GE Sbjct: 71 MPRYFFNFAYLGSRFSGSQSQPNQLTVQGVLEVSLIKFAYFDCRQNVLAMILLSPLGEEP 130 Query: 44 VVHGAGRTDSGVHALRQVAHFDL--VREWVPVILCKALNAYL-KISDTISILNLSIVDKQ 100 + + RTD+GVHA A DL R++ L ALN+ L K+ I I + V Sbjct: 131 RWYFSSRTDAGVHAFMNTATVDLDPERDFDSDYLKSALNSMLTKLDMEIRINSCRRVSGG 190 Query: 101 FHARFSAIRRSYLYRI-------------------ITRQA----PLALEKGRAWLIPKSL 137 F AR A+ R YLYR+ T+ A PL +E RAW + + Sbjct: 191 FCARRHALEREYLYRLAILKPEFESDHHKQTNNTSTTQNAHHSLPL-IEHRRAWALSSAF 249 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHC------QASSPIRTIDHFDVN------------- 178 + E R AA G H+F +F + + ++ I D++ Sbjct: 250 NHERFRKAALMFQGSHNFASFMTNSVGNLDRPTGIATVKNISRLDIDFGKALMDSKHEPC 309 Query: 179 -SFGNLIEIRVVARSFLHTQI 198 F N ++ V+RSFL+ Q+ Sbjct: 310 SDFFNFFDVSFVSRSFLYNQV 330 >gi|261328820|emb|CBH11798.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei gambiense DAL972] Length = 458 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 100/245 (40%), Gaps = 36/245 (14%) Query: 8 IEYNGSGYFGWQRQKNGSS-----IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + Y+G Y G RQ + + ++E+ F+ GRTD GV AL V Sbjct: 61 LAYHGHIYCGLVRQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVSALGNVV 120 Query: 63 HF-DLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 F W P+ C+ LN L TI I+ S V+ F ARFS R+Y Y Sbjct: 121 SFTSRASSWATDEHQQPPLDYCEKLNNVL--PPTIRIVGWSYVNADFDARFSCTGRTYRY 178 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTID 173 R L+ E MR A +L G H+F F ++ ++ R + Sbjct: 179 YFCNR----------------GLNLEAMRKAVGYLKGVHNFRNFCKTDVVNVNNYERHVR 222 Query: 174 HFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 H D+ L ++ + A SFL+ QIR + L LVG +++ L DRK Sbjct: 223 HADIVGSEMLPDLVSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLDCGDRKP 282 Query: 230 CGPLA 234 PLA Sbjct: 283 VYPLA 287 >gi|323455279|gb|EGB11148.1| hypothetical protein AURANDRAFT_21872 [Aureococcus anophagefferens] Length = 264 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 103/264 (39%), Gaps = 34/264 (12%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV----AH 63 ++Y G + GWQ Q N S+ A+ AGRTD GV+A QV + Sbjct: 9 LQYLGDAFAGWQPQPNERSVHDVFAAALSNAGITDCGAVAAGRTDRGVNAAHQVVSVRSD 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D E + +L + + + +L+ FHA SA + Y Y + Sbjct: 69 ADRGDEDLSAVL---RDVSAALPGDVRVLSCRQAPASFHAITSARSKRYAYYL-----GF 120 Query: 124 ALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDF------------TTFRSIHCQASSPIR 170 + + R +W P LD +R A LVG DF +T RS+ + Sbjct: 121 SEDAARYSWQAPPGLDVGRVRRGAALLVGERDFRAFCAPGGRKCGSTVRSLRSVEIDDLE 180 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T + V L+ I FL Q R VG+L +G G + +E AL D + Sbjct: 181 TAELPFVGRVRGLLRIAFDGDGFLKHQCRKIVGALVRLGTGALSEAQVEAAL--ADPRGA 238 Query: 231 GP-------LAPPEGLYFDSVEYS 247 P AP GL+ + V+Y+ Sbjct: 239 HPAVSSRRFAAPARGLWLERVDYA 262 >gi|154341677|ref|XP_001566790.1| pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064115|emb|CAM40310.1| putative pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 499 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 45/264 (17%) Query: 8 IEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHG------AGRTDSGVHAL-- 58 + Y+G + G +QK ++++G + A+ V ++ G GRTD GV AL Sbjct: 66 LAYHGHVHDGLAKQKETDNTVEGLVCDALRRV--RLIPEDGPHNFGRCGRTDKGVSALGN 123 Query: 59 ------RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 R D + P+ C LN L TI I+ ++VD +F ARFS + R+Y Sbjct: 124 AFSLTARASCTADADPQLPPLDYCSMLNNVLP--STIRIVGCALVDDRFDARFSCVHRTY 181 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRT 171 Y + + L+ M+ AA +G H+F F + S+ RT Sbjct: 182 RY----------------YFCHRGLNLAAMQEAAAFFLGTHNFRNFCQMDVVNVSNFTRT 225 Query: 172 IDHFDVNSFGNLIE----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + ++ L E + + A SFL+ QIR + L LVG G + ++ L+ D Sbjct: 226 VLSVGLHPSEELPELISYLEITANSFLYHQIRCTMEVLFLVGRGLEAPSVVQTMLELGDC 285 Query: 228 KECGPLAPPEGL-----YFDSVEY 246 K PLA L FD+V++ Sbjct: 286 KPTYPLADGTPLILWDCAFDNVQW 309 >gi|30692743|ref|NP_198390.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|27311599|gb|AAO00765.1| putative protein [Arabidopsis thaliana] gi|30725698|gb|AAP37871.1| At5g35400 [Arabidopsis thaliana] gi|332006580|gb|AED93963.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 420 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 16/127 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHG----A 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ L+ + + G A Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL QV F R+ + P+ + A+N S + ++++S V + FH FSA Sbjct: 153 GRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINK--DASGKLRVVSISKVSRSFHPNFSA 210 Query: 108 IRRSYLY 114 R YLY Sbjct: 211 KWRRYLY 217 >gi|315638468|ref|ZP_07893645.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis JV21] gi|315481459|gb|EFU72086.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis JV21] Length = 240 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 108/248 (43%), Gaps = 11/248 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q + +S+Q ++ A+ + G V A RTD GVHALR V Sbjct: 1 MRLKLVFSYDGSAFLGSASQPHLNSVQDALAAALAHL-GIFSPVLFASRTDKGVHALRAV 59 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + + ++ L + +N + I I +L V + + RF R+ YR I Sbjct: 60 ACVECGKHFKDLVYLKRQINRF--AHPFIHIKSLERVSENYAVRFDV--RAREYRYIFHH 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 R + D + H VG DF F+ A + +R + ++ Sbjct: 116 GEFNPFLSRYVCFSERFDIKRANELLSHFVGEKDFKFFQKAGGSAKTSVRIMFFARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--LAPPEG 238 +L A FL QIR V S+ V G+ + L++ ++A K C LAP G Sbjct: 176 KDLSIFCFRANGFLRAQIRLSVASVMAVLRGELSEDKLKEQIEA---KACHYRLLAPANG 232 Query: 239 LYFDSVEY 246 LY + Y Sbjct: 233 LYLSRIIY 240 >gi|154503357|ref|ZP_02040417.1| hypothetical protein RUMGNA_01181 [Ruminococcus gnavus ATCC 29149] gi|153796024|gb|EDN78444.1| hypothetical protein RUMGNA_01181 [Ruminococcus gnavus ATCC 29149] Length = 252 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 5/159 (3%) Query: 6 MIIEYNGSGYFGWQ---RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +EY+G+ Y GW+ +++N ++ G I A+ + E + + A +TD GVHA Q+ Sbjct: 6 LTVEYDGTRYAGWKAAPKKENLDTVLGRIHTALARLLKEDIQLFCAAKTDPGVHARGQIL 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F +P L +LN L I++L+ V ++FHA + I T P Sbjct: 66 SFQTTSSLLPSALKSSLNQVL--PQDIAVLDARQVSERFHAELLPKHCIWELCIKTGPTP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 + +P D M+ A L GRHD F + Sbjct: 124 DVFRQKYTLFLPDLPDPLRMQEAFSFLKGRHDVRCFSPV 162 >gi|67484392|ref|XP_657416.1| pseudouridine synthase [Entamoeba histolytica HM-1:IMSS] gi|56474668|gb|EAL52030.1| pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS] Length = 366 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 83/204 (40%), Gaps = 33/204 (16%) Query: 23 NGSSIQGSIEKAIF----LVTGEIVVVHGAGRTDSGVHALRQVAHF----DLVREWV--- 71 N +I+ + KA+F + + + GRTD GV A QV +L E + Sbjct: 70 NDGTIEYQLFKALFKTRLIQNTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYT 129 Query: 72 ----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + C+ LN L I L V F++RFS R+Y Y Sbjct: 130 KREGELDYCRMLNGLLPTD--IRCLGWCGVPDDFNSRFSCQSRTYHY------------- 174 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + P S D M+ AAQ +G HDFT F S +R ++ F+V L Sbjct: 175 ---YFDPSSYDVPKMKEAAQLFLGEHDFTNFCKKDPAVSHCVRRVNSFEVEETDGLSRFV 231 Query: 188 VVARSFLHTQIRSFVGSLKLVGDG 211 V +F+ Q+R VG+L +G G Sbjct: 232 VCGTAFVWHQVRYMVGALFAIGQG 255 >gi|297805092|ref|XP_002870430.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297316266|gb|EFH46689.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 420 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 16/127 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHG----A 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ L+ + + G A Sbjct: 93 VNFKIVLSYNGTSFDGWQKQPDLHTVQGVVEKSLGGFVDDRKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL QV F R+ + P+ + A+N S + ++++S V + FH FSA Sbjct: 153 GRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINK--DASGKLRVVSISKVSRSFHPNFSA 210 Query: 108 IRRSYLY 114 R YLY Sbjct: 211 KWRRYLY 217 >gi|283954398|ref|ZP_06371918.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 414] gi|283794015|gb|EFC32764.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 414] Length = 240 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + S+Q + +A+ + G + A RTD GVHA VA + Sbjct: 5 IIFSYDGSAFLGSATQPHKKSVQDVLGEALSHL-GIFSPLLMASRTDKGVHASYAVASVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + L K LN + I I + V F RF R Y Y I + + Sbjct: 64 CGEYFTNLEYLKKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHASYSP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 PK D + VG+ D F + +R I ++ + Sbjct: 121 FMASYVHFYPK-FDLDKANELLSFFVGKKDLKFFCKSGGDNKTTLREIFLARAYTYKDFS 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY + Sbjct: 180 IFRFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNRFLAPPNGLYLSRI 238 Query: 245 EY 246 Y Sbjct: 239 HY 240 >gi|332006581|gb|AED93964.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 471 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 22/130 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FL--------------VTGEIVVV 45 + + +++ YNG+ + GWQ+Q + ++QG +EK++ F+ + G ++V Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLV- 151 Query: 46 HGAGRTDSGVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 AGRTD GV AL QV F R+ + P+ + A+N S + ++++S V + FH Sbjct: 152 --AGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINK--DASGKLRVVSISKVSRSFHPN 207 Query: 105 FSAIRRSYLY 114 FSA R YLY Sbjct: 208 FSAKWRRYLY 217 >gi|292655987|ref|YP_003535884.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2] gi|291370921|gb|ADE03148.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2] Length = 283 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 31/247 (12%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHALRQVA 62 + Y+G Y G+QRQ + +++ +I A + E AGRTD+GV AL Q Sbjct: 6 VAYDGRPYHGFQRQPDVPTVEDAIFDACRALGVCDDDEEPTDYAAAGRTDAGVSALAQTV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F+ P +ALN+ ++ T+ + FHAR RR Y+Y + AP Sbjct: 66 AFECPDWCTP----RALNS--ELPGTVRAWADADAPDDFHARHWPTRREYVYDL---HAP 116 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + D + + A G HD FR++ +R ID + G+ Sbjct: 117 T-----------EGFDDDRAKAAFDACRGDHD---FRNLTPDDHGTVRAIDGG-LTRDGD 161 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLY 240 + +RV A F +R V ++ VG + ++ AL D E APP L Sbjct: 162 FLLVRVEAGGFARELVRRLVSLVRAVGSDAAPLSKVDDALGPDHLDGPEGIAPAPPTPLL 221 Query: 241 FDSVEYS 247 +V+Y Sbjct: 222 LTAVDYP 228 >gi|86153529|ref|ZP_01071733.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843255|gb|EAQ60466.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni HB93-13] Length = 241 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA + +V + L K LN + I I + V F RF R Y Y I + Sbjct: 60 VASVECGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + PK D + VG+ D F + +R I + Sbjct: 117 SSYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYA 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GL Sbjct: 176 YKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGL 234 Query: 240 YFDSVEY 246 Y + Y Sbjct: 235 YLSRICY 241 >gi|294790441|ref|ZP_06755599.1| tRNA pseudouridine synthase A [Scardovia inopinata F0304] gi|294458338|gb|EFG26691.1| tRNA pseudouridine synthase A [Scardovia inopinata F0304] Length = 382 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 42/198 (21%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGA------- 48 +R + Y+G+ + GW RQ + ++QG +E AI V G+ A Sbjct: 1 MRLKIDCSYDGTDFHGWARQPDLRTVQGELEAAIAKVLHLWQPAGQTADYPSAFAKALAN 60 Query: 49 --------------GRTDSGVHALRQVAHFDLVREWV--------PVIL--CKALNAYLK 84 GRTD+GVHA QV H DL ++ + P AL L+ Sbjct: 61 QSAPVSFWPHLVVAGRTDTGVHARGQVCHLDLDQDLLGRAQGHLDPARFKPWDALTYRLR 120 Query: 85 --ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP--KSLDCE 140 + D +S+ +S + F ARFSA R Y+YR+ Q + R++++ +S D + Sbjct: 121 RILPDDLSVSAISPAPEGFDARFSASDRVYVYRVADDQTSYD-PRLRSFVLNLRRSTDIQ 179 Query: 141 NMRIAAQHLVGRHDFTTF 158 M A +VG HDF +F Sbjct: 180 IMNTALAEIVGLHDFGSF 197 >gi|145590498|ref|YP_001152500.1| pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514] gi|166228752|sp|A4WHI1|TRUA_PYRAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145282266|gb|ABP49848.1| Pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514] Length = 257 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 109/249 (43%), Gaps = 43/249 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAG-RTDSGVHALRQVA 62 Y I Y+G+ ++G+ N S+E + GEI+ G G RTD GV A+ V Sbjct: 3 YLYRIAYDGTLFYGFTGHPN------SLEPKLRAALGEIL---GRGSRTDPGVSAVANV- 52 Query: 63 HFDLVREWVPVILCKALN-AYL--KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V+ + L+ Y+ K+ + ++ V + F+ R + RR YLY Sbjct: 53 ----------VMTSQRLHLGYVNSKLPRGVWAWGVAEVPEGFNPRRAKARR-YLY----- 96 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVN 178 AP E D E MR AA LVG HD+++F ++P + T+ +V Sbjct: 97 VAPHWGE-----------DVEAMREAAAVLVGTHDYSSFIKRRGDKATPTVTTVYKIEVE 145 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G LI + V R F + IR ++ G G ++DL + L + R P AP EG Sbjct: 146 QRGGLIYMMFVGRGFRNKMIRKMAWAILATGRGVLKASDL-RELVERPRPGAVPSAPAEG 204 Query: 239 LYFDSVEYS 247 L ++Y Sbjct: 205 LVLLDIDYG 213 >gi|71665382|ref|XP_819661.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70884973|gb|EAN97810.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 429 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 104/245 (42%), Gaps = 36/245 (14%) Query: 8 IEYNGSGYFGWQRQKNGSS-----IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + Y+G Y G +Q+ S+ + +++ + + + GRTD GV AL V Sbjct: 46 LAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVSALGNVF 105 Query: 63 HFDL-VREWV------PVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 + W P + C LN+ L + TI I+ + VD F ARFS + R+Y Y Sbjct: 106 SLTVRASSWPTDSPQKPALDYCAMLNSALPV--TIRIVGWAYVDDTFDARFSCVGRTYRY 163 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS----PIR 170 + + L+ E M AA L G H+F F S +R Sbjct: 164 ----------------YFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSNYERDVR 207 Query: 171 TIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 ++ F +F L+ + + A SFL+ QIR + L LVG G + + L+ DRK Sbjct: 208 SVGIFASEAFPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLERGDRKP 267 Query: 230 CGPLA 234 PLA Sbjct: 268 VYPLA 272 >gi|154148265|ref|YP_001406534.1| tRNA pseudouridine synthase A [Campylobacter hominis ATCC BAA-381] gi|153804274|gb|ABS51281.1| tRNA pseudouridine synthase A [Campylobacter hominis ATCC BAA-381] Length = 278 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 91/208 (43%), Gaps = 7/208 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 I+ +I ++GS + G Q Q NG +++ + A+F V+ A RTD GVHAL QV Sbjct: 5 IKIRLIYSFDGSKFCGSQTQPNGKAVEDRLNSALFRCGINEKVI-SASRTDKGVHALSQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + W L +N + K S I + + D+ F RF A RSY Y I+ Sbjct: 64 STTHCAAFWDLQNLRHFINRHAKPS--IYVRKIERADENFQVRFDAKARSYRY-ILNHDE 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + P+ + + ++ VG+HDF+ F AS +R I + Sbjct: 121 FSPFFSNYFYFYPE-ISPFLLNLSLGIFVGKHDFSEFMK-SGSASGSVREIYKAFAYRYK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGS-LKLV 208 N I A FL Q+R V + LK V Sbjct: 179 NFTIINFKANGFLRAQVRLMVANALKCV 206 >gi|18312431|ref|NP_559098.1| tRNA pseudouridine synthase ACD [Pyrobaculum aerophilum str. IM2] gi|24212564|sp|Q8ZXR6|TRUA_PYRAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|18159888|gb|AAL63280.1| tRNA pseudouridine synthase A [Pyrobaculum aerophilum str. IM2] Length = 256 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 108/247 (43%), Gaps = 41/247 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAG-RTDSGVHALRQVA 62 Y I Y+G+ ++G+ N S+E + L+ GEI+ G G RTD GV A+ V Sbjct: 3 YLYRIAYDGTMFYGFTGHPN------SLEPRLRLIFGEIL---GRGSRTDPGVSAVGNVV 53 Query: 63 HF--DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +V + K A+ ++ V + F+ R + +RR YLY Sbjct: 54 MTGRKMALGYVNSKMPKGAWAW----------GIAEVPEGFNPRRAKLRR-YLY-----V 97 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS 179 AP E D + MR AA+ L G HD+++F + + +P + T+ DV Sbjct: 98 APHWGE-----------DVDVMREAAKLLTGTHDYSSFIQLRGEKHTPTVTTVYDIDVTL 146 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI I R F + IR +L G G + DL L+ + R P AP EGL Sbjct: 147 RGDLIFIYFAGRGFRNKMIRKMAWALLAAGRGVLSVDDLADLLK-KPRPGAVPSAPAEGL 205 Query: 240 YFDSVEY 246 + Y Sbjct: 206 VLLDIVY 212 >gi|145355737|ref|XP_001422107.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582347|gb|ABP00424.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 308 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 25/258 (9%) Query: 3 RYCMI-IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTD 52 R C + Y G+GY G QR +I+G +E AI G G A RTD Sbjct: 3 RKCAVTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAARTD 62 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV +V E P + + +NA L + + + V F+A+ RR Y Sbjct: 63 KGVSAVGQVVALKMVLE--PSGMVERINAAL--PERFEVFGIDRVTGGFNAKTMCDRRRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA--QHLVGRHDFTTF----RSIHCQAS 166 Y I TR L A + R+ ++ G H+F + + QA Sbjct: 119 EYVIPTRAFDPNLGAEGAAEAFAFTEETRSRVDGVLKNYCGTHNFHNYTVKVKPTDAQAK 178 Query: 167 SPIRTID---HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 I + + F+V + +VV +SF+ QIR +G++ V G+ T D + AL Sbjct: 179 RYIISFECSAPFEVEG-EQFVRCQVVGQSFMLHQIRKLIGTMLAVVRGELTEDDQKFALL 237 Query: 224 AQDRKECGPLAPPEGLYF 241 + P+AP GL+ Sbjct: 238 THEFVPT-PMAPELGLFL 254 >gi|321464475|gb|EFX75483.1| hypothetical protein DAPPUDRAFT_323292 [Daphnia pulex] Length = 429 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 112/256 (43%), Gaps = 37/256 (14%) Query: 8 IEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + Y G Y G+ Q++ + + ++EK L + E H GRTD GV + Q Sbjct: 73 VAYVGWDYAGFVVQEHTEKTIEAEVFKALEKTRLLESRETSNYHRCGRTDKGVSSFGQAI 132 Query: 63 HFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR-----FSAIRRSYLY 114 DL + E V + A K+ +T+ I + I++K ++ I +S Sbjct: 133 SIDLRSNLSEGKGVFIPDGHQA--KVGNTVEIDYVGILNKVLPPEIRMIAWAPINQSLSA 190 Query: 115 RIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQ--------- 164 R RQ + + PK+ L+ E MR+A+Q L+G HDF + Sbjct: 191 RFDCRQ------RTYHYYFPKANLNIERMRVASQSLIGEHDFRNLCKMDVGNGVIKFDRR 244 Query: 165 -ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 I ID NS+ ++I ++++ ++FL Q+R V L L+G GK +T +++ L Sbjct: 245 IMDIQIEAIDDDKANSY-SMIRLKLIGQAFLWHQVRCIVAILFLIGQGKEETTIIQELLN 303 Query: 224 AQDRKECGPLAPPEGL 239 E P P G+ Sbjct: 304 V----ERNPRKPQYGM 315 >gi|305666822|ref|YP_003863109.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] gi|88709046|gb|EAR01280.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] Length = 282 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 25/259 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G + GWQ+Q +++G I K + F++ + AGRTDS V AL A Sbjct: 30 YVIKLQYLGFRFSGWQKQPGQKTVEGMITKTLKFILPNSEFKILSAGRTDSKVSALD--A 87 Query: 63 HFDL-VREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 F+L + E P+ +A + I ++++ V++ F+ + Y+Y Sbjct: 88 AFELFINE--PLTDFEAFIGLFNKNLPSDIRVMSIKEVNEDFNIIQDPKVKEYVYLFSYG 145 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI------- 172 + LD E M+ AA VG HD + + + RTI Sbjct: 146 SKNHPYSSPFITNVLDELDLELMKKAASLYVGTHDLSVYTVKAQNNAHKKRTITSCEIIE 205 Query: 173 ------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + F S+ RV F+ QIR +G+L +G G+ D+E +L + Sbjct: 206 NKILQANFFPEKSYA----FRVEGPGFMRYQIRMMMGALIQLGKGELLFADIENSLSNPE 261 Query: 227 RKECGPLAPPEGLYFDSVE 245 E +AP GL + ++ Sbjct: 262 SIELTYVAPGSGLLLNRLD 280 >gi|213622913|ref|ZP_03375696.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 91 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 41/63 (65%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFD 65 HF+ Sbjct: 71 HFE 73 >gi|86130141|ref|ZP_01048741.1| tRNA pseudouridine synthase A [Dokdonia donghaensis MED134] gi|85818816|gb|EAQ39975.1| tRNA pseudouridine synthase A [Dokdonia donghaensis MED134] Length = 259 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 17/255 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ+Q + +++ +E+ +++ + + +GRTD+ V A VA Sbjct: 8 YLLKIQYLGFRYHGWQKQPDVLTVERMMERTFSYVLDRKNFKLLASGRTDAKVSA--NVA 65 Query: 63 HFDLVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +L P+ LN + I L ++ VDK+F+ + I + Y+Y Sbjct: 66 YVELFLNDSPLPAEGFLTLLND--NLPQDIRCLQITQVDKKFNVMDAPIAKEYVYLFSYG 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--------RSIHCQASSPIRT 171 + I LD E M+ AA+ G HDF ++ ++I SS I Sbjct: 124 EKNHPFAAPYMINIAGDLDIELMKEAARLFEGEHDFRSYAYKPNPQTQTIGHVLSSTIEI 183 Query: 172 IDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 D + + F RV + F QIR +G+L +G G +K L A + + Sbjct: 184 NDLYTASFFPEESYAFRVSGKGFKRHQIRLMMGALFDLGQGNIDLEFFKKTLDASNDIKL 243 Query: 231 GPLAPPEGLYFDSVE 245 +A GL V+ Sbjct: 244 TRIAQASGLLLQDVQ 258 >gi|270719040|ref|ZP_06223281.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270315483|gb|EFA27724.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 96 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFD 65 HF+ Sbjct: 61 VHFE 64 >gi|195449703|ref|XP_002072187.1| GK22713 [Drosophila willistoni] gi|194168272|gb|EDW83173.1| GK22713 [Drosophila willistoni] Length = 412 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 113/270 (41%), Gaps = 33/270 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ YFG QR +I+ + K + +I A RTD Sbjct: 65 KSAILLSYCGANYFGMQRNPGMQTIEEELFKVMLKHKWITEDSFEQVQIACFQRAARTDK 124 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L + + KA N L + I + + V K F+A+ R+Y Sbjct: 125 GVSAARQVCSVKLPDD----LDLKAFNEDL--PEQIRLFGVERVTKGFNAKDQCNARTYT 178 Query: 114 YRIITRQ-APLALEKGRAWLIP--KSLDC------ENMRIAAQHLVGRHDFTTFRSI-HC 163 Y + T AP E + P +S C + +R Q G +F F S + Sbjct: 179 YTLPTVAFAPCQSESDKEAQPPEEQSTYCISPEHLQKVRETLQLYEGTKNFHNFTSKKNF 238 Query: 164 QASSPIRTI------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 S R I D F + ++V +SF+ QIR VG + G T++ Sbjct: 239 LDPSAKRFIMLFSCSDPFKSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTST 298 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 LE+AL ++R + P+AP GL D+V Y Sbjct: 299 LERAL-TEERLDL-PMAPGLGLVLDTVHYE 326 >gi|194744150|ref|XP_001954558.1| GF18329 [Drosophila ananassae] gi|190627595|gb|EDV43119.1| GF18329 [Drosophila ananassae] Length = 410 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 113/266 (42%), Gaps = 31/266 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E + +A NA L D I + + V K F+A+ R+Y Sbjct: 131 GVSAARQVCSVKLPDE----LDLEAFNADL--PDQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIITRQAPLALEK-----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS----IHCQ 164 Y + T + EK + P+ L E +R + G +F F S + Sbjct: 185 YTLPTVAFASSEEKIEDLHDTYRITPELL--EKVRETLKLYEGTKNFHNFTSKKNFLDPS 242 Query: 165 ASSPIRTI---DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 A I + D F + ++V +SF+ QIR VG + G T+ LE+A Sbjct: 243 AKRFIMSFVSSDPFLSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTESLERA 302 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 L ++R + P+AP GL D+V Y Sbjct: 303 L-TEERLDL-PMAPGLGLVLDTVHYE 326 >gi|121613330|ref|YP_001000512.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] gi|166228692|sp|A1VZH1|TRUA_CAMJJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121504241|gb|EAQ72335.2| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] Length = 241 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA +V + L K LN + I I + V F RF R Y Y I + Sbjct: 60 VASVGCGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + PK D + VG+ D F + +R I + Sbjct: 117 SSYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYA 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GL Sbjct: 176 YKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGL 234 Query: 240 YFDSVEY 246 Y + Y Sbjct: 235 YLSRICY 241 >gi|55379749|ref|YP_137599.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049] gi|62901222|sp|Q5UXW0|TRUA_HALMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|55232474|gb|AAV47893.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049] Length = 275 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 27/249 (10%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVV--VHGAGRTDSGVHALRQV 61 + Y+G Y G+QRQ + +++G + A+ + GE + AGRTD+GV A Q Sbjct: 6 VAYDGQPYHGFQRQPDVDTVEGRLRSALVRLGVCERGEGLPDRYAAAGRTDAGVSARTQT 65 Query: 62 AHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 FD P L A N ++ + + + + V + FHA A R+Y Y + Sbjct: 66 VAFD-----APAWLSPAAFNG--ELPNDVRVWASADVPEDFHATHDAAERTYTYYLY--- 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ++ + +D A L G HD F ++ + RT+ D Sbjct: 116 APADADRPEH----EPVDDGRWADAVDALAGTHD---FHNLTTDETGTERTV-AIDWTRD 167 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEG 238 G + +++ A F +R V V DG + +++ L + + P APPE Sbjct: 168 GQFLVVQLTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILSPEPVSGPDGVPPAPPEP 227 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 228 LVLTDVRYP 236 >gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis] gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis] Length = 505 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 97/230 (42%), Gaps = 49/230 (21%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVV------VHGAGRTDSGVHALR 59 + Y G GY G+ Q+N + ++E+ +F L+ +V H GRTD GV AL Sbjct: 68 LAYLGWGYQGFASQEN---TKNTVEETVFNALIKTRLVESRQTSNYHRCGRTDRGVSALG 124 Query: 60 QVAHFDL--VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV DL E P I LN L I +L+ + V F ARFS R+Y Y Sbjct: 125 QVISLDLRCSGEGKPEIRYVHILNRVL--PPDIRVLSWAAVPPSFSARFSCRSRTYRY-- 180 Query: 117 ITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTF-------------RSIH 162 L P LD E M AA+ L G HDF R++ Sbjct: 181 ---------------LFPCAQLDVEAMDKAARLLEGTHDFRNLCKMDVANGVMNFIRTVL 225 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 P+ I D+ F L +++ +FL+ Q+R +G L LVG GK Sbjct: 226 SARVEPVPEIPG-DMGPF-QLYRLQITGLAFLYHQVRCIMGVLFLVGQGK 273 >gi|289192063|ref|YP_003458004.1| tRNA pseudouridine synthase A [Methanocaldococcus sp. FS406-22] gi|288938513|gb|ADC69268.1| tRNA pseudouridine synthase A [Methanocaldococcus sp. FS406-22] Length = 262 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 35/245 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSI----QGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M+ I++ G + +Q+Q + ++ ++E+ FL +I+ + GRTD GV Sbjct: 1 MVITMHILKIAYDGRYSFQQQPHKQTVCDILLDTLEEIDFLAKKKII--YSGGRTDKGVS 58 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL +L +E P++ +NA LK I +L +D+ ++ R Y Y Sbjct: 59 ALGNFVIVELKKE--PIL--SYINAKLK-DKGIWVLGYREIDEIPKVKY----RHYRY-- 107 Query: 117 ITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDH 174 ++P + + + ++ A+ ++G H F + + SPIRTI Sbjct: 108 ---------------ILPNINYNIDAIKEGAKKMIGTHSFHNLSKRDKSKEKSPIRTIYD 152 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ + I ++ SFL +R VG+L LVG GK D L ++ +E P Sbjct: 153 IKISENEFYLTIDIIGESFLWNMVRKIVGALDLVGRGK-KPVDWIGKLLDENHREGVPTF 211 Query: 235 PPEGL 239 PP+GL Sbjct: 212 PPDGL 216 >gi|221054442|ref|XP_002258360.1| tRNA pseudouridine synthase [Plasmodium knowlesi strain H] gi|193808429|emb|CAQ39132.1| tRNA pseudouridine synthase, putative [Plasmodium knowlesi strain H] Length = 306 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 111/258 (43%), Gaps = 32/258 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIF---LVTGEIVVVHGAGRTDSGVHA- 57 ++ + Y G G+ G QK N ++++ + + L++G RTD GV A Sbjct: 6 KFIIFFSYVGMGFNGSAYQKDNPNTVENRLMDCLHDMNLISGVDQPFSRVSRTDKGVSAR 65 Query: 58 -----LR-QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 +R ++ H + + + + K +N LK + ++++ V F AR + I R+ Sbjct: 66 MNALTIRLKIRHPHMTLQDIQRVYVKEINKKLK---NMQVIDIRSVPNFFDARLNCIHRT 122 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 YLY + I K+ + + ++ + VG HDF+ F ++ RT Sbjct: 123 YLY----------------FFIDKNYNFDRIKQGCKLFVGEHDFSNFCKKRKNSTCFRRT 166 Query: 172 IDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKE 229 I F+V N ++ SFL+ QIR V +L VG G DL L K+ Sbjct: 167 ILKFEVRRMDKNFHYFKIKGTSFLYNQIRHMVAALFQVGTGNLALGDLANMLNNHPSSKK 226 Query: 230 CGPLAPPEGLYFDSVEYS 247 +A +GL S +++ Sbjct: 227 NFQIANEDGLLLYSFKFN 244 >gi|223040118|ref|ZP_03610398.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [Campylobacter rectus RM3267] gi|222878595|gb|EEF13696.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [Campylobacter rectus RM3267] Length = 483 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 10/222 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q Q + + ++ ++ A+ V G + + RTD GVHA QV Sbjct: 1 MRLKLVFSYDGSKFQGSQTQPHENGVEDALGAALAHV-GIFSKIISSSRTDKGVHANNQV 59 Query: 62 AHFDLVREWVPVILCKAL-NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + K+L N + + + + +S FH R+ A R+Y Y I + Sbjct: 60 ACVECGEHFRDFTRLKSLINRHAHPA--VHVKFISRARDCFHPRYDATARAYRYVINHGE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L +L P+ D VG HDF+ F + SP+R + + Sbjct: 118 FSPFLAPYETFL-PR-FDLNLANELLALFVGEHDFSAFMKLGSDVKSPVRRVSKAFCYAR 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGS----LKLVGDGKWTSTDL 218 G I A FL Q+R V S L+L +GK+ TD+ Sbjct: 176 GERSIIVFKANGFLRAQVRLMVASVFKALELAKNGKFKETDV 217 >gi|163788523|ref|ZP_02182969.1| tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] gi|159876843|gb|EDP70901.1| tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] Length = 261 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 24/261 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + I+Y G + GWQ+Q + +I I++ + + ++ GAGRTD+ V A Sbjct: 8 YLIKIQYLGYRFHGWQKQPDVKTIHLMIDRTLKFILKDVRFKTLGAGRTDAMVSANEAAL 67 Query: 63 HFDLVREWVPVILCKALNAYLKISD-----TISILNLSIVDKQFHA-RFSAIRR-SYLYR 115 + E P+ A+LK+ + I L++S VDK F+ + S I+ Y++ Sbjct: 68 ELFIYNE--PIT---DFEAFLKLFNHNLPQDIRALSISEVDKAFNIIQDSKIKEYHYVFS 122 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + P L P LD E M+ A+ G H+F T+ RTI+ Sbjct: 123 EGEKNHPFCAPILTTILEP--LDVELMKKGAKLFEGSHNFKTYCYRATDKGEYFRTIESS 180 Query: 176 DV--NSF--GNLIE-----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 ++ NS N +V + F+ QIR G L +G G+ T +E L+ Sbjct: 181 EIIDNSLYTANFFPEQSYVFKVRGKGFMRNQIRLMFGCLIKLGRGEVTLQYIENTLKHDS 240 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 + +AP GL S+++ Sbjct: 241 TEVMDYIAPASGLILHSIDFE 261 >gi|296108989|ref|YP_003615938.1| tRNA pseudouridine synthase A [Methanocaldococcus infernus ME] gi|295433803|gb|ADG12974.1| tRNA pseudouridine synthase A [Methanocaldococcus infernus ME] Length = 258 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 33/240 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G F Q K + ++EK FL E +++ GRTD GV AL Sbjct: 2 YILKIAYDGRYSFQQQPHKETVCDKLLNTLEKLNFL--EERKIIYSGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L +E + + L + I IL ++ + Sbjct: 60 VILKLKKEPILSYINHELKKF-----GIWILGYKEIE---------------------EI 93 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 P + +++P + E MR A + L+G H F + + SPIR I +N Sbjct: 94 PKVQYRHYRYIMPNLDYNLELMRKAGEKLIGEHSFHNLSKRDRSKEKSPIRKIYDIKIND 153 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +G +E+ VV SFL +R VG L L+G + + ++K L R E P EGL Sbjct: 154 YGFFLEVDVVGESFLWQMVRKIVGLLHLIGREEKSLEWVDKILDPNYR-EGVITFPAEGL 212 >gi|322493546|emb|CBZ28834.1| putative pseudouridine synthase A-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 499 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 36/216 (16%) Query: 49 GRTDSGVHAL--------RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 GRTD GV AL R D + P+ C LN L TI I+ ++VD Sbjct: 112 GRTDKGVSALGNALSLTARASCTADAEPQLPPLDYCSMLNNVLP--STIRIVGCALVDDA 169 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARFS + R+Y Y + + L+ M+ AA +G H+F F Sbjct: 170 FDARFSCVHRTYRY----------------YFFHRGLNLAAMQEAAAFFLGTHNFRNFCK 213 Query: 161 IH-CQASSPIRTIDHFDVNSFGNLIE----IRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + S+ +RT+ + L E + + A SFL+ QIR + L LVG G Sbjct: 214 MDVVNVSNFVRTVFSVGLYPSEELPELISYLEIRANSFLYHQIRCTMEVLFLVGRGLEAP 273 Query: 216 TDLEKALQAQDRKECGPLAPPEGLY-----FDSVEY 246 + ++ L+ D K PLA L FD+V++ Sbjct: 274 SVVQTLLELGDCKPTYPLADGTPLVLWDCGFDNVQW 309 >gi|154174016|ref|YP_001408137.1| tRNA pseudouridine synthase A [Campylobacter curvus 525.92] gi|153793037|gb|EAU00484.2| tRNA pseudouridine synthase A [Campylobacter curvus 525.92] Length = 241 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 97/242 (40%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q Q + + +Q ++ +A+ V G + + RTD GVHA Q A + Sbjct: 5 LIFSYDGSKFQGSQTQPHENGVQDALSRALAHV-GIFDKLALSSRTDKGVHATAQSATVE 63 Query: 66 LVREWVPVILCKAL-NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + K L N + I I N+ V+ F AR+ A R LYR I Sbjct: 64 CGEHFKDLDRLKNLINRH--AHPFIHIKNIKRVNDDFQARYDAKAR--LYRYIIDHGRYD 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + L D + +G HDF+ F SPIR I + N Sbjct: 120 VFHAEHCLFAPKFDTARANHILKIFIGEHDFSAFMKTGSGTKSPIREIYKAYCYEYKNKT 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I A FL Q+R V SL + K L A+ + P A +GLY V Sbjct: 180 VIVFKANGFLRAQVRLMVASLLKALNLKDGDELLNLAINHKKPLTRIP-AAAQGLYLSRV 238 Query: 245 EY 246 Y Sbjct: 239 FY 240 >gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis] Length = 505 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 96/229 (41%), Gaps = 47/229 (20%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVV------VHGAGRTDSGVHALR 59 + Y G GY G+ Q+N + ++E+ +F L+ +V H GRTD GV AL Sbjct: 68 LAYLGWGYQGFASQEN---TKNTVEETVFNALIKTRLVESRQTSNYHRCGRTDRGVSALG 124 Query: 60 QVAHFDL--VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV DL E P I LN L I +L+ + V F ARFS R+Y Y Sbjct: 125 QVISLDLRCSGEGKPEIRYVHILNRVL--PPDIRVLSWAAVPPSFSARFSCRSRTYRYLF 182 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-------------RSIHC 163 Q LD E M AA+ L G HDF R++ Sbjct: 183 SCAQ----------------LDVEAMDKAARLLEGTHDFRNLCKMDVANGVMNFIRTVLS 226 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 P+ I D+ F L +++ +FL+ Q+R +G L LVG GK Sbjct: 227 ARVEPVPEIPG-DMGPF-QLYRLQITGLAFLYHQVRCIMGVLFLVGQGK 273 >gi|324505293|gb|ADY42276.1| tRNA pseudouridine synthase A [Ascaris suum] Length = 491 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 115/267 (43%), Gaps = 28/267 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGEIVV------VHGAGRTDS 53 RY M+I Y G Y G Q QK+ +I+G + A+ L+T E V+ A RTD Sbjct: 63 RYAMLIAYQGKNYCGMQVQKDAPTIEGCLLNAMQKYGLITDEEVIKPNLFFFQRAARTDR 122 Query: 54 GVHALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 V A+RQ+ L E +P + LN L + I ++ + + F+A+ R+Y Sbjct: 123 AVSAVRQMCSMMLNFDEQLPKTVPDELNKLL--PEDIRVMGIRRATRTFNAQKDCDARTY 180 Query: 113 LYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIR 170 Y + T A + A+ I E + Q VG H+F + S S R Sbjct: 181 SYTLPTYAFAKVDELTSSAYRITDETINE-INALLQIFVGTHNFFNYTSKREFSDRSCFR 239 Query: 171 TIDHFDVNS---FGN--------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 I F + F N + I + +SF+ QIR +G + + G +D++ Sbjct: 240 YIIDFKCGAKFLFKNELRNEDVEFLTISIKGQSFMLHQIRKMIGMVIAISRGLLYKSDIQ 299 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ ++ R + P AP GL + V Y Sbjct: 300 RSFESA-RMDV-PKAPGLGLLLEKVHY 324 >gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis] gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis] Length = 507 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 95/229 (41%), Gaps = 47/229 (20%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 + Y G GY G+ Q+N + ++E+ +F + +V H GRTD GV AL Sbjct: 65 LAYLGWGYQGFASQEN---TKNTVEETVFNALLKTRLVESRQTSNYHRCGRTDRGVSALA 121 Query: 60 QVAHFDL--VREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV DL E P I LN L I +L+ + V F ARFS R+Y Y Sbjct: 122 QVISLDLRCSAEGKPEIRYVHILNRVL--PPDIRVLSWAPVPPSFSARFSCGSRTYRYLF 179 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-------------RSIHC 163 Q LD E M AA+ L G HDF R++ Sbjct: 180 PCAQ----------------LDVEAMDKAARLLEGTHDFRNLCKMDVANGVLNFTRTVLS 223 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 P+ I D+ F L +++ +FL+ Q+R +G L LVG GK Sbjct: 224 ARVGPVPEIPG-DMGPF-QLYHLQITGLAFLYHQVRCIMGVLFLVGQGK 270 >gi|300710278|ref|YP_003736092.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3] gi|299123961|gb|ADJ14300.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3] Length = 266 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 29/191 (15%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHG---AGRTDSGVHALRQVAH 63 I Y+G+ Y+G+QRQ + +++G + A+ LVT E G AGRTD GV AL Q Sbjct: 6 IAYDGAPYYGFQRQPDVETVEGVLFDALDRLVTFEGEKPAGYAAAGRTDRGVSALAQTVA 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F+ EW + A N+ ++ T+ + FHAR+ A R+Y Y Sbjct: 66 FE-APEW---LTPAAFNS--ELPGTVRAWASADAPDDFHARYDARSRTYAY--------- 110 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 +L D E +R L G HD F ++ + RTI N G Sbjct: 111 -------YLHAPGADVEAIRGVLSRLSGTHD---FHNLTPEDGPTTRTITRARANREGPF 160 Query: 184 IEIRVVARSFL 194 + + + A FL Sbjct: 161 VVLTLRADGFL 171 >gi|312892438|ref|ZP_07751932.1| tRNA pseudouridine synthase A [Mucilaginibacter paludis DSM 18603] gi|311295072|gb|EFQ72247.1| tRNA pseudouridine synthase A [Mucilaginibacter paludis DSM 18603] Length = 358 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 4/171 (2%) Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK 135 ++LNA L I++ + V HARF A RSY Y + + P +W + Sbjct: 189 TRSLNALLP--HDIAVKRIIPVHADAHARFDATLRSYEYHVHFEKDPFL--NNLSWQLRD 244 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 D M AAQ ++ DF+ F + Q + I + S G+ + + A FL Sbjct: 245 RPDVGLMNQAAQIVMEYTDFSCFSKSNTQVKTNNCKISRAEWVSNGDKLIFHISADRFLR 304 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R+ VG+L +VG G ++ + +++++R G P GLY V Y Sbjct: 305 NMVRAIVGTLMMVGKGDIKPEEVRRIIESKNRSNAGVSVPACGLYLTEVRY 355 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQ Q N S+Q + KA+ + V G GRTD+GVHA + A Sbjct: 6 RYFIELAYDGTNYHGWQIQHNAISVQQVLNKALSTLLRMPVETLGCGRTDTGVHAKQLYA 65 Query: 63 HFDLVREWVPVI 74 HFD+ R+ P++ Sbjct: 66 HFDIGRQEQPIV 77 >gi|86152100|ref|ZP_01070312.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 260.94] gi|85840885|gb|EAQ58135.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 260.94] Length = 240 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA VA + Sbjct: 5 IIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAVASVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +V + L K LN + I I + V F RF R Y Y I + + Sbjct: 64 CGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHSSYSP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 PK D + VG+ D F + +R I ++ + Sbjct: 121 FMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYKDFS 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY + Sbjct: 180 IFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLYLSRI 238 Query: 245 EY 246 Y Sbjct: 239 CY 240 >gi|225011098|ref|ZP_03701561.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] gi|225004732|gb|EEG42691.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] Length = 268 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 28/226 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALRQV 61 Y + + Y G Y GWQ+Q +I+ + K I V GE + GAGRTD+ V ++ Sbjct: 8 YLVRVSYLGFRYSGWQKQPGVKTIESMLTKTISFVLGETRSFKILGAGRTDAKVSSIH-- 65 Query: 62 AHFDLVREWVPVILCKALNAY--LKISDTISILNLSIVDKQFHARFSAIRRS--YLYRII 117 F+L E P+ AL L + I + +++ V+++F+ SA ++ YL+ Sbjct: 66 GAFELFIEHEPLKNLDALMDLFNLNLPADIRVESITAVEEKFNIIHSAKEKTYCYLFSFG 125 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-PIRTI---- 172 ++ P + P+ L+ M+ AA+ G HDF F + + +S IRTI Sbjct: 126 SKAHPFCAPIMANY--PEDLNITLMQEAAKLFEGTHDFKNFTARKDKKNSQTIRTIASCE 183 Query: 173 ---------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 F +S+ ++E+R + FL QIR +G+L +G Sbjct: 184 LKKNKAISASFFPEDSY--VLEVR--GKGFLRYQIRLMMGALICLG 225 >gi|302023348|ref|ZP_07248559.1| tRNA pseudouridine synthase A [Streptococcus suis 05HAS68] Length = 124 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDVNSFGNLIEIR 187 A P LD + A Q LVG HDFT F + +RTI + + + Sbjct: 4 ATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTIKAASMEYDQRRQFLIFT 63 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A GLY + Y Sbjct: 64 FSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRSLAGPTAAGNGLYLKEIIY 122 >gi|83320035|ref|YP_424629.1| tRNA pseudouridine synthase A [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123753714|sp|Q2SRI4|TRUA_MYCCT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83283921|gb|ABC01853.1| tRNA pseudouridine synthase A, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 249 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 11/201 (5%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 Y+GS Y GW Q N S Q + KAI + T E + GA +TD+ VHAL Q L+ Sbjct: 11 YDGSNYHGWINQTNSISTQTVLNKAIKKVIKTSEFKTI-GASKTDANVHALDQKVL--LI 67 Query: 68 REWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + P IL K +NA K + + I ILN VD F+ R + Y Y I + + Sbjct: 68 IYFTP-ILEKFINAINKALPEDIRILNAKFVDPNFNIR-EVDYKIYNYYINDHKFDIFTN 125 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFDVNSFGNL 183 + + +D ++ +G H+F F + R ID V N Sbjct: 126 RYEYFWKHSKIDILKLQEIFNLFIGEHEFKLFSGLKENEWDNYQTKRIIDDIKVLRINNK 185 Query: 184 IEIRVVARSFLHTQIRSFVGS 204 + I+ A F+ QIR + + Sbjct: 186 VVIQFKATGFIRYQIRIIIAN 206 >gi|330902540|gb|EGH33555.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 231 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVRE 69 HFD E Sbjct: 68 VHFDTQAE 75 >gi|242001376|ref|XP_002435331.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215498661|gb|EEC08155.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 442 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 39/269 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGEIVVV------HGAGRTDS 53 + + + YNG Y G QR +I+ + +A++ L+ E V V A RTD Sbjct: 72 KMALCMSYNGKDYLGMQRNPGTKTIEDDLLQAMYKGDLILKEHVDVPQAMKFQRAARTDK 131 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+RQ+ L + +N++L D I ++++ + F+ + S R+Y Sbjct: 132 GVSAVRQIVSLKLPTNLTVEEMVDKINSHL--VDQIRVIDIKRTTRGFNCKNSCDSRTYT 189 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRS-IH 162 Y + T A+ P+S E+ RI + + G H++ F S Sbjct: 190 YVLPT----------FAFAPPESPAEESYRITEERIGEVNNVLALYKGCHNYHNFTSGKK 239 Query: 163 CQASSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + S +R I + V +++++ +SF+ QIR VG + + G T Sbjct: 240 SEDPSAMRYIISAECAQPFVQGDQEFVQVQIKGQSFMLHQIRKMVGLVIAIMRGCTKETT 299 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +A + K P+AP GL + V Y Sbjct: 300 IRRAWGPE--KLDLPIAPALGLMLEEVHY 326 >gi|322823466|gb|EFZ29213.1| hypothetical protein TCSYLVIO_4538 [Trypanosoma cruzi] Length = 409 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 103/245 (42%), Gaps = 36/245 (14%) Query: 8 IEYNGSGYFGWQRQKNGSS-----IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + Y+G Y G +Q+ S+ + +++ + + + GRTD GV AL V Sbjct: 26 LAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVSALGNVF 85 Query: 63 HFDL-VREWV------PVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 + W P + C LN+ L + TI I+ + VD F ARFS + R+Y Y Sbjct: 86 SLTVRASSWPTDSPQKPALDYCAMLNSALPV--TIRIVGWAYVDDTFDARFSCVGRTYRY 143 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS----PIR 170 + + L+ E M AA L G H+F F S +R Sbjct: 144 ----------------YFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSNYERDVR 187 Query: 171 TIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 ++ F + L+ + + A SFL+ QIR + L LVG G + + L+ DRK Sbjct: 188 SVGIFASEALPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLERGDRKP 247 Query: 230 CGPLA 234 PLA Sbjct: 248 VYPLA 252 >gi|303288890|ref|XP_003063733.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454801|gb|EEH52106.1| predicted protein [Micromonas pusilla CCMP1545] Length = 313 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 103/258 (39%), Gaps = 25/258 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-------LVTGEIVVVH--GAGRTDS 53 + + + Y G GY G QR +I+ +EKAI L G+ V A RTD Sbjct: 3 KVAIFLAYVGKGYQGMQRNPGAVTIEDELEKAIVAAGGISDLNAGDFAKVQWMRAARTDK 62 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+ Q +V + P + +NA L + V F+A+ RR Y Sbjct: 63 GVSAVGQCVSLRMVID--PPGVIDRVNAAL--PEGFEFFGYERVTGGFNAKTMCDRRRYE 118 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----VGRHDFTTFR-SIHCQASSP 168 Y + + + P D E MR + VG H+F F + S Sbjct: 119 YVVPVKAFDPRAKNSDDASPPFEFD-ETMRQRVNKILGNYVGTHNFHNFTVRVSPDEPSA 177 Query: 169 IRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R I FD ++ + VV +SF+ QIR +G + V G W+ D AL Sbjct: 178 MRYIISFDCSAPFVVDGVAFVRCVVVGQSFMLHQIRKLIGMMLGVIRGAWSEEDQLFALN 237 Query: 224 AQDRKECGPLAPPEGLYF 241 ++ P+AP GL+ Sbjct: 238 TKESVNV-PMAPELGLFL 254 >gi|195158909|ref|XP_002020326.1| GL13924 [Drosophila persimilis] gi|194117095|gb|EDW39138.1| GL13924 [Drosophila persimilis] Length = 409 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 27/263 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQ+ L E + +A NA L + I + + V K F+A+ R+Y Sbjct: 131 GVSAARQICSVKLPEE----LDLEAFNADL--PEQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIIT---RQAPLALEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFRSIHCQASS- 167 Y + T E+ + P+ LD E +++ + H+FT+ ++ ++ Sbjct: 185 YTLPTVAFASCEAESEQDTFRITPELLDRVKETLKLY-EGTKNFHNFTSKKNFLDPSAKR 243 Query: 168 ---PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + + F + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 244 FIMAFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLERAL-T 302 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 ++R + P+AP GL D+V Y Sbjct: 303 EERLDL-PMAPGLGLVLDTVHYE 324 >gi|57242355|ref|ZP_00370294.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis RM3195] gi|57017035|gb|EAL53817.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis RM3195] Length = 240 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 11/248 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q + +S+Q ++ A+ + G V A RTD GVHALR V Sbjct: 1 MRLKLVFSYDGSAFLGSACQPHLNSVQDALAAALAHL-GIFSPVLFASRTDKGVHALRAV 59 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + ++ L + +N + I I +L V + + RF R+ YR I Sbjct: 60 ACVECGEHFKDLVYLKRQINRF--THPFIHIKSLERVSENYAVRFDV--RAREYRYIFHH 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + D + H VG DF F+ A + +R + ++ Sbjct: 116 GEFNPFLSPYVCFSERFDIKKANELLSHFVGEKDFKFFQKAGGSAKTSVRIMFFARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--LAPPEG 238 +L A FL QIR V S+ V G+ + L++ ++A K+C LAP G Sbjct: 176 KDLSIFCFRANGFLRAQIRLSVASVMAVLRGELSEDKLKEQIEA---KKCHYRFLAPANG 232 Query: 239 LYFDSVEY 246 LY + Y Sbjct: 233 LYLSRIIY 240 >gi|167005448|ref|ZP_02271206.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] Length = 240 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA VA Sbjct: 5 IIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAVASVG 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +V + L K LN + I I + V F RF R Y Y I + + Sbjct: 64 CGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHSSYSP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 PK D + VG+ D F + +R I ++ + Sbjct: 121 FMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYKDFS 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY + Sbjct: 180 IFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLYLSRI 238 Query: 245 EY 246 Y Sbjct: 239 CY 240 >gi|196008069|ref|XP_002113900.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens] gi|190582919|gb|EDV22990.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens] Length = 385 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 23/259 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 + +++ + G+GYFG QR + +I+ + A+F + + A RTD Sbjct: 47 KVALLLGFCGAGYFGMQRNRGTKTIEEDLINALFKAGAIPEAAKEHEQKMAFQRASRTDK 106 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA QV F + +V + +N++L I + V K F+++ + R+Y Sbjct: 107 GVHAAAQVVSFKM---FVVDDVIAKINSHL--PREIRVFGHFRVTKGFNSKTACDARTYK 161 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTI 172 Y ++ A EK +++ +++R VG +F F S + S R I Sbjct: 162 Y-VMPTYAFANKEKKNMYILVIEATIKHVRDILAMYVGTRNFHNFTSKKAYEDDSAKRYI 220 Query: 173 DHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 FD V + + + V +SF+ QIR +G + + G T +EKA + +DR Sbjct: 221 MQFDCGLPFVRNNLEFVTLTVKGQSFMLHQIRKMIGLMIGIVRGDATIEAMEKAWE-KDR 279 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P AP GL + Y Sbjct: 280 VDI-PRAPGLGLMLYQLHY 297 >gi|19074961|ref|NP_586467.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1] gi|19069686|emb|CAD26071.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1] Length = 339 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 41/225 (18%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAH- 63 + I Y+G Y G Q +I G +E A+ GE +V AGRTD+GV A+ +A Sbjct: 63 LKISYDGRRYSGVSPQSGRETIGGYLEYALKSTRLGEKLVY--AGRTDAGVSAIGMIASG 120 Query: 64 ----------------FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 D +E+ ++ LN +L I ++ + V F ARF+ Sbjct: 121 VLTSRIEMPNRSYAVAEDDYKEYKYDVM---LNNHL--PPDIRVVGWAPVPDTFSARFTC 175 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 I+R Y Y + K LD + M AA + G F F + + Sbjct: 176 IQRQYRY----------------YFHKKGLDIDRMSKAASEIKGMSSFYCFSKHSDKNAR 219 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 RT+D V G+L + + AR+FLH +R V ++K G G+ Sbjct: 220 YERTLDECRVVDDGDLYYLDIRARAFLHNMVRKIVWAIKKSGRGE 264 >gi|159479156|ref|XP_001697664.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158274274|gb|EDP00058.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 382 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 10 YNGSGYFGWQRQKNG-SSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 Y+GS + G+Q Q ++QG +E K +F+ +V G+ RTD G HA QV HFD Sbjct: 29 YDGSEFAGFQFQPGKVRTVQGELERCAKRLFVGCSRMV---GSSRTDGGAHAYGQVVHFD 85 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + E + L + + +L LS ++ F + FSA ++Y+Y+ Sbjct: 86 VYGE-RDNLESDTLYYNSFLPPDVRVLELSYAEEGFDSHFSACGKTYIYKFAAGLPDPMQ 144 Query: 126 EKGRAWLIPK---------------SLDCENMRIAAQHLVGRHDFTTF 158 K R W+ + LD M A Q L+GRHDF+ F Sbjct: 145 AKYRWWVYDRWCERSRGKPSKLSDIRLDVGAMCEAGQLLLGRHDFSAF 192 >gi|283957185|ref|ZP_06374649.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 1336] gi|283791361|gb|EFC30166.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 1336] Length = 240 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA VA + Sbjct: 5 IIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAVASVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +V + L K LN + I I + V F RF R Y Y I + + Sbjct: 64 CGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHSSYSP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 PK D VG+ D F + +R I ++ + Sbjct: 121 FMASYVHFYPK-FDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYKDFS 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY + Sbjct: 180 IFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLYLSRI 238 Query: 245 EY 246 Y Sbjct: 239 CY 240 >gi|311264306|ref|XP_003130101.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa] Length = 479 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 97/243 (39%), Gaps = 58/243 (23%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 68 IAYLGWGYQGFASQENTSN---TIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAFG 124 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-----------------ISILNLSIVDKQFH 102 QV DL ++ + +N +++D I +L + V+ F Sbjct: 125 QVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 184 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF------- 155 ARFS + R+Y Y + LD M AAQ VG HDF Sbjct: 185 ARFSCLERTYRY----------------FFPHADLDIVTMNYAAQKYVGTHDFRNLCKMD 228 Query: 156 -----TTFRS--IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 T F+ + Q ++++ L + VV ++FL+ Q+R + L L+ Sbjct: 229 VANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFLI 288 Query: 209 GDG 211 G G Sbjct: 289 GQG 291 >gi|298709054|emb|CBJ31003.1| conserved unknown protein [Ectocarpus siliculosus] Length = 412 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 126/276 (45%), Gaps = 37/276 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + Y+G+ Y G+Q Q +G ++QG +EKA+ V V AGRTD+GVH++ Q Sbjct: 138 RFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQA 197 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSI--------VDK--QFHARFSAIRR 110 HFDL + L ++N + + + + N+S+ V+K + + +A + Sbjct: 198 VHFDLPNANEDLSQLAYSMNQMMP--EDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGK 255 Query: 111 SYLYRIITRQAPLALEK------GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 Y YR+ L++ +A P ++D I LVG+HDF F + + Sbjct: 256 RYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIP--KLVGKHDFAGFSNEVTK 313 Query: 165 ASS-----------PIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 ++ +RT+ + ++ G I + L+ +R+ VG+L V G+ Sbjct: 314 RATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGR 373 Query: 213 WTSTDLEK--ALQAQDRKECGPLAPPEGLYFDSVEY 246 +++ A + +D + AP GL D+V Y Sbjct: 374 LEPEVIDEIFATRVRDSRLIY-AAPAHGLTLDTVLY 408 >gi|81022386|gb|ABB55198.1| tRNA pseudouridine synthase [Enterococcus faecium] Length = 89 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 6 MIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA QVA+F Sbjct: 6 LTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARGQVANF 65 Query: 65 DLVREWVPVILCKALNAYL 83 E + +N YL Sbjct: 66 KTNTEIGLAEMIDFMNRYL 84 >gi|219120077|ref|XP_002180785.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407501|gb|EEC47437.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 347 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 62/306 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQ---------------------RQKNGSSIQGSIEKAIFLVT 39 ++RY + Y+G+ + G+Q + K ++QG +E + Sbjct: 36 VVRYRARVAYDGTSFQGFQIQGSNKVVDDKNCNGITHQNRKDKQQRTVQGELETVLSTRW 95 Query: 40 GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV---ILCKALNAYLKISDTISILNLS- 95 + V V AGRTD+GVHA Q HFD+ P L ++L L T+ L + Sbjct: 96 NQPVRVVAAGRTDAGVHARGQAIHFDVNVSETPTDHASLERSLARMLPTDVTLWNLQFAP 155 Query: 96 -----IVDKQ-----FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIA 145 +VD Q ++ + + Y YR+ T L + W P ++D + A Sbjct: 156 SARTKLVDGQERVLPWNVMYDNTHKLYSYRLSTAAVMDPLSRQHRWH-PDNVDAYVVGKA 214 Query: 146 A--------QHLVGRHDFTTFRSIHCQ----ASSPI---RTIDHFDVNSFGNLIEIRV-- 188 +H G HDF F S Q + PI RT+ +V N ++R+ Sbjct: 215 GLAQLTRLLKHYEGTHDFRAFASAMEQLEKHSDGPIDTVRTVYSVNVVPEANEGDVRIDF 274 Query: 189 VARSFLHTQIRSFVGSLKLVGDGK-WTSTDLEKALQ-------AQDRKECGPLAPPEGLY 240 V + L+ Q+R+ VG++ G+ +D+ + LQ ++ P APP+GL Sbjct: 275 VLKGALYKQVRNMVGTVLETCRGEIMKESDMLRLLQDATASGLSRADNPSKP-APPQGLT 333 Query: 241 FDSVEY 246 ++V + Sbjct: 334 LENVYF 339 >gi|313231689|emb|CBY08802.1| unnamed protein product [Oikopleura dioica] Length = 443 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 103/271 (38%), Gaps = 39/271 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIV-----------VVHGAG 49 + ++I Y G Y G Q + +IEK +F LV ++V Sbjct: 82 KVAILISYCGKNYHGLQHNPGDDKVD-TIEKRVFQALVAAKVVYSNVINDRKKCAYQSCS 140 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A+ VA +P LC+ +NA+L D I + + V K F A+ Sbjct: 141 RTDKGVSAIGNVASLKCK---IPKNLCELVNAHL--PDDIRLTSFEQVTKGFCAKKRCTH 195 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSL-----DCENMRIAAQHLVGRHDFTTFRSIHCQ 164 R+Y Y T + W P S E +R + +G + F S Q Sbjct: 196 RTYSYYCPT----ICFGSKEDWDRPSSFRISTEKLEGVRELLKKYIGTRSYHNFTSGKRQ 251 Query: 165 A-SSPIRTI-------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 S R I D F N + +E+RVV +SF+ QIR VG + Sbjct: 252 GDESAKRHILDFRIQGDPFICNEW-EYVELRVVGQSFMIHQIRKMVGLIIARAGNHCQDD 310 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 E+A Q E P AP GL V Y Sbjct: 311 HWERAFQRP--FEDVPKAPGNGLVLRQVHYD 339 >gi|313665546|ref|YP_004047417.1| tRNA pseudouridine synthase A [Mycoplasma leachii PG50] gi|312949580|gb|ADR24176.1| putative tRNA pseudouridine synthase A [Mycoplasma leachii PG50] Length = 249 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 13/202 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 Y+GS Y GW Q N SIQ + KAI + T E + GA +TD+ VHAL Q L+ Sbjct: 11 YDGSNYHGWINQINSISIQTVLNKAIKKVIKTSEFKTI-GASKTDANVHALDQKVL--LI 67 Query: 68 REWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P++ KA+N L I ILN V+ F+ R + Y Y I + + Sbjct: 68 IYFTPILEKFIKAINKAL--PKDIRILNAKFVNSDFNIR-EVEYKIYNYYINDYKFDIFT 124 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFDVNSFGN 182 + + +D ++ VG H+F F + R ID V N Sbjct: 125 NRYEYFWKHSKIDILKLQEIFNLFVGEHEFKLFSGLKENEWDNYQTKRIIDDIKVLRINN 184 Query: 183 LIEIRVVARSFLHTQIRSFVGS 204 + I+ A F+ QIR + + Sbjct: 185 KVVIQFKATGFIRYQIRIIIAN 206 >gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus] Length = 480 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 98/245 (40%), Gaps = 62/245 (25%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 68 IAYLGWGYQGFASQENTTN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 124 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-----------------ISILNLSIVDKQFH 102 QV DL ++ ++ N+ + +D I IL + VD F Sbjct: 125 QVISLDLRSQFPMAKDSESCNSKDEANDVAEEIRYTHILNRVLPPDIRILAWAPVDPGFS 184 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y P++ LD M AAQ VG HDF + Sbjct: 185 ARFSCLERTYHY-----------------FFPRADLDIVTMNCAAQKYVGTHDFRNLCKM 227 Query: 162 HCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLK 206 A+ I RTI V G L + V ++FL+ Q+R + L Sbjct: 228 DV-ANGVINFQRTILSAKVQLVGQSLGEERWQEHFQLCQFEVTGQAFLYHQVRCMMAILF 286 Query: 207 LVGDG 211 L+G G Sbjct: 287 LIGQG 291 >gi|125773069|ref|XP_001357793.1| GA17995 [Drosophila pseudoobscura pseudoobscura] gi|54637526|gb|EAL26928.1| GA17995 [Drosophila pseudoobscura pseudoobscura] Length = 409 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 27/263 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQ+ L E + +A NA L + I + + V K F+A+ R+Y Sbjct: 131 GVSAARQICSVKLPEE----LDLEAFNADL--PEQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIIT---RQAPLALEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFRSIHCQASS- 167 Y + T E+ + P+ LD E +++ + H+FT+ ++ ++ Sbjct: 185 YTLPTVAFASCEAESEQDTFRITPELLDRVKETLKLY-EGTKNFHNFTSKKNFLDPSAKR 243 Query: 168 ---PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + + F + ++V +SF+ QIR VG + G T+ L++AL Sbjct: 244 FIMAFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLDRAL-T 302 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 ++R + P+AP GL D+V Y Sbjct: 303 EERLDL-PMAPGLGLVLDTVHYE 324 >gi|302802211|ref|XP_002982861.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii] gi|300149451|gb|EFJ16106.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii] Length = 289 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 17/257 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-----------FLVTGEI--VVVHGAGR 50 + +++ Y+G+ + GWQ+Q ++Q +EK + G+I +V AGR Sbjct: 14 FKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQGKIKEALVSVAGR 73 Query: 51 TDSGVHALRQVAHF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GVHA QV F +RE + A+N+ + + ++ S V++ FH FSA Sbjct: 74 TDKGVHACGQVCSFYTWMRECKEEDVKSAVNSAMPT--ILRAVSASEVNRDFHPIFSAKW 131 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y+Y I ++ ++ + + + L+ ++ A + ++ + C Sbjct: 132 RRYIY-IFPLRSRDEIDVSKVATLLRGLEGHSLSYAIFARDTKIARSSGPATVCTLYHAR 190 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + V + N++ + +VA FL +R V + L ++ DR+ Sbjct: 191 AALAKLPVPNEENVMVVELVADRFLRKMVRVLVSTAIKEAFAGANDDALVALMEETDRRA 250 Query: 230 CGPLAPPEGLYFDSVEY 246 P AP GL V Y Sbjct: 251 SAPPAPAHGLCLAEVGY 267 >gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens] gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens] Length = 279 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 99/237 (41%), Gaps = 47/237 (19%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDSG 54 R + Y G Y+G Q+ I+ +IE +F + ++ +GRTD G Sbjct: 10 RVAFKLAYIGWDYYGLASQE---GIEKTIEAELFNALTKTCLIENRTNSNYSRSGRTDKG 66 Query: 55 VHALRQVAHFDLVREWV--PVILCKALN--AYLKISDT-----ISILNLSIVDKQFHARF 105 V AL QV ++ P ++ + ++ +Y+K+ + I IL + VD F ARF Sbjct: 67 VSALGQVISLNVRTNLASGPGVIVETVSELSYVKLLNKVLPGDIRILAWAPVDNDFSARF 126 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQ 164 + + R+Y Y + +++ E M AAQ L G HDF F + Sbjct: 127 NTVSRTYKY----------------YFPRANMNIEAMNEAAQRLKGEHDFRNFCKMDLAN 170 Query: 165 ASSPIRTIDHFDVNSFGN----------LIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 S+ R I V S + EI V ++FL Q+R V L L+G G Sbjct: 171 VSNFRREILSIKVQSIETPYVLQNQGFEMCEIIVCGKAFLWHQVRCMVAILFLIGQG 227 >gi|76803149|ref|YP_331244.1| tRNA pseudouridine synthase A [Natronomonas pharaonis DSM 2160] gi|121697999|sp|Q3IMP6|TRUA_NATPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76559014|emb|CAI50612.1| tRNA-pseudouridine synthase [Natronomonas pharaonis DSM 2160] Length = 267 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 25/156 (16%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKA-----IFLVTGEIVVVHGAGRTDSGVHALRQVA 62 I Y+G+G+ G+QRQ +G +++ ++ +A + G AGRTD+GV A Q Sbjct: 6 IAYDGTGFRGFQRQPHGETVENALFEALSSLGVAFEDGRPPGYAAAGRTDAGVSARAQTV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F+ W +L +ALN L S + + V FHA A R+Y Y + + Sbjct: 66 AFE-APAW---LLPRALNGELPAS--VRAWAAADVGDAFHATHDATARAYRYFLYAPE-- 117 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 S D R A L G HDF F Sbjct: 118 ------------PSADTTRARAACARLSGSHDFHNF 141 >gi|281362146|ref|NP_001163664.1| CG4159, isoform B [Drosophila melanogaster] gi|272477072|gb|ACZ94960.1| CG4159, isoform B [Drosophila melanogaster] Length = 442 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 61/281 (21%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 103 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDK 162 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E + +A NA L I + + V K F+A+ R+Y Sbjct: 163 GVSAARQVCSVKLPEE----LDLEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYT 216 Query: 114 YRIIT-----------------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 Y + T R +P L+K + E +++ + H+FT Sbjct: 217 YTLPTVAFAPFEEKVDDVHDTFRISPELLQKVK----------ETLKL-YEGTKNFHNFT 265 Query: 157 TFRS----------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + +S + +S P R+ + + ++V +SF+ QIR VG Sbjct: 266 SKKSFLDPSSKRFIMSFTSSEPFRSPQDIE------FVTLKVKGQSFMLHQIRKMVGLAI 319 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + G T+ LE+AL ++R + P+AP GL D+V Y Sbjct: 320 AIVRGNTTAATLERAL-TEERLDL-PMAPGLGLVLDTVHYE 358 >gi|294461715|gb|ADE76416.1| unknown [Picea sitchensis] Length = 448 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 74/317 (23%), Positives = 125/317 (39%), Gaps = 76/317 (23%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------------IVVVHGAGR 50 + +++ Y+G+ + GWQ+Q +++QG +EK++ E V AGR Sbjct: 126 FKIVLSYDGNLFDGWQKQPGMNTVQGLVEKSLGKFVDEKKAQELEAKKASVEAAVAVAGR 185 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS--DTISILNLSIVDKQFHARFSAI 108 TD GV A +QV F W + + + + + + ++++S V ++FH FSA Sbjct: 186 TDKGVSAFQQVCSF---YTWRKDTSLEDIESEINAAALGKLKVVSISEVSREFHPNFSAK 242 Query: 109 RRSYLY-----------RIITRQAP-------LALEKGRAWLIPKSLDCENMRIAA---- 146 R YLY ++ +P LA E G ++ E M I+A Sbjct: 243 WRRYLYILPLKDGEGNKTVVDGGSPVTYDSLCLADEGGNQSTDMNVINMEAMNISATGKH 302 Query: 147 QHLVGRHDFT----------------TFR--------------SIHC---QASSPIRTID 173 Q V H+F ++R + C A + + T+ Sbjct: 303 QASVKPHNFNVDTVNQLLQQLEGQSLSYRIFARDTQASRSRGPATECFMHHARAAVATLP 362 Query: 174 HF--DVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + D S G + + +VA FL +R V + T +L K + A R+ Sbjct: 363 YMGQDHTSKGRTVMCVELVANRFLRKMVRVLVATAVREAAAGATPDNLLKLMHATCRRAS 422 Query: 231 GPLAPPEGLYFDSVEYS 247 P APPEGL + Y+ Sbjct: 423 APPAPPEGLCLVDIGYT 439 >gi|24648455|ref|NP_650899.1| CG4159, isoform A [Drosophila melanogaster] gi|7300636|gb|AAF55785.1| CG4159, isoform A [Drosophila melanogaster] Length = 410 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 61/281 (21%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E + +A NA L I + + V K F+A+ R+Y Sbjct: 131 GVSAARQVCSVKLPEE----LDLEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIIT-----------------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 Y + T R +P L+K + E +++ + H+FT Sbjct: 185 YTLPTVAFAPFEEKVDDVHDTFRISPELLQKVK----------ETLKL-YEGTKNFHNFT 233 Query: 157 TFRS----------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + +S + +S P R+ + + ++V +SF+ QIR VG Sbjct: 234 SKKSFLDPSSKRFIMSFTSSEPFRSPQDIE------FVTLKVKGQSFMLHQIRKMVGLAI 287 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + G T+ LE+AL ++R + P+AP GL D+V Y Sbjct: 288 AIVRGNTTAATLERAL-TEERLDL-PMAPGLGLVLDTVHYE 326 >gi|323452423|gb|EGB08297.1| hypothetical protein AURANDRAFT_11850 [Aureococcus anophagefferens] Length = 266 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 87/216 (40%), Gaps = 24/216 (11%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDSGVHALR 59 I Y G Y G+ Q + ++E+ +F + +V GRTD GV AL Sbjct: 23 ISYEGGAYSGFAEQNIPGAGVDTVERQLFAALKKTCLVESRESCGYSRCGRTDKGVSALG 82 Query: 60 QVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV + R P+ LN L D + L V +F ARFS R+Y Y Sbjct: 83 QVVGLRVRSAARAGEPLDYVNMLNRVL--PDDVRALAWRPVVPEFSARFSCASRTYRY-F 139 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF- 175 +P G A+ +P AA LVG HDF F + R + + Sbjct: 140 FPATSP---NTGAAYDVPAMA------AAAARLVGDHDFRNFCKMDVLHVKNFRRVVYAA 190 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 DV G+ + ++FL +RS V L LVG+G Sbjct: 191 DVRKTGDGFFFEIHGQAFLWHMVRSLVAVLFLVGEG 226 >gi|195569417|ref|XP_002102706.1| GD20050 [Drosophila simulans] gi|194198633|gb|EDX12209.1| GD20050 [Drosophila simulans] Length = 411 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 61/281 (21%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E + +A NA L I + + V K F+A+ R+Y Sbjct: 131 GVSAARQVCSVKLPEE----LDLEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIIT-----------------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 Y + T R +P L+K + E +++ + H+FT Sbjct: 185 YTLPTVAFASFEEKVDDVHDTFRISPELLQKVK----------ETLKL-YEGTKNFHNFT 233 Query: 157 TFRS----------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + +S + +S P R+ + + ++V +SF+ QIR VG Sbjct: 234 SKKSFLDPSSKRFIMSFTSSEPFRSPQDIE------FVTLKVKGQSFMLHQIRKMVGLAI 287 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + G T+ LE+AL ++R + P+AP GL D+V Y Sbjct: 288 AIVRGNTTAATLERAL-TEERLDL-PMAPGLGLVLDTVHYE 326 >gi|195353947|ref|XP_002043463.1| GM23177 [Drosophila sechellia] gi|194127604|gb|EDW49647.1| GM23177 [Drosophila sechellia] Length = 411 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 61/281 (21%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E + +A NA L I + + V K F+A+ R+Y Sbjct: 131 GVSAARQVCSVKLPEE----LDLEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIIT-----------------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 Y + T R +P L+K + E +++ + H+FT Sbjct: 185 YTLPTVAFASFEEQVEDVHDTFRISPELLQKVK----------ETLKL-YEGTKNFHNFT 233 Query: 157 TFRS----------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + +S + +S P R+ + + ++V +SF+ QIR VG Sbjct: 234 SKKSFLDPSSKRFIMSFTSSEPFRSPQDIE------FVTLKVKGQSFMLHQIRKMVGLAI 287 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + G T+ LE+AL ++R + P+AP GL D+V Y Sbjct: 288 AIVRGNTTAATLERAL-TEERLDL-PMAPGLGLVLDTVHYE 326 >gi|270002527|gb|EEZ98974.1| hypothetical protein TcasGA2_TC004829 [Tribolium castaneum] Length = 390 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 115/265 (43%), Gaps = 32/265 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 ++ +++ Y+G+ Y+G QR N +I+ KA++ + + A RTD Sbjct: 58 KFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQFQRAARTDK 117 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L RE + + +N L + I + + V K F+++ RSY Sbjct: 118 GVSAARQVVSLKL-REDIDI---SKINEQL--PEVIRVFGIRRVTKGFNSKVQCDSRSYT 171 Query: 114 YRI----ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP- 168 Y + T L ++KG L +L+ N + Q +G +F F S QA+ P Sbjct: 172 YLLPTVSFTPHDQLMVQKG-FRLDDSTLNRINDLL--QKYLGTKNFHNFTS-KKQATDPS 227 Query: 169 ----IRTI--DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 ++T+ + V I++ +SF+ QIR VG L V G +TS D Sbjct: 228 AKRYMKTLICEKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKG-YTSEDTLDLA 286 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 D+ P AP GL D V Y Sbjct: 287 FGMDKVNI-PKAPGLGLLLDYVHYE 310 >gi|86150269|ref|ZP_01068496.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597547|ref|ZP_01100781.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 84-25] gi|148926529|ref|ZP_01810211.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni CG8486] gi|218562455|ref|YP_002344234.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|24212598|sp|Q9PP96|TRUA_CAMJE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|85839385|gb|EAQ56647.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190139|gb|EAQ94114.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 84-25] gi|112360161|emb|CAL34955.1| tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845223|gb|EDK22317.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni CG8486] Length = 241 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA + + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 VASVECGDYFTNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + PK D VG+ D F + +R I + Sbjct: 117 ASYSPFMASYVHFYPK-FDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYA 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GL Sbjct: 176 YKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGL 234 Query: 240 YFDSVEY 246 Y + Y Sbjct: 235 YLSRICY 241 >gi|195055095|ref|XP_001994456.1| GH16145 [Drosophila grimshawi] gi|193892219|gb|EDV91085.1| GH16145 [Drosophila grimshawi] Length = 395 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 42/272 (15%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 59 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHNWITEDSFKQVQIASFQRAARTDK 118 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E V K L +TI + + V K F+A+ R+Y Sbjct: 119 GVSAARQVCSIKLPDELDLVAFNKDL------PETIRLFGVERVTKGFNAKEQCNARTYT 172 Query: 114 YRIIT------RQAPLALEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFRS----- 160 Y + + + ++ L P + CE +++ + H+FT+ ++ Sbjct: 173 YTLPSIAFAGCNEQQNQQDQATFRLTPALHEQICETLKL-YEGTKNFHNFTSKKNFLDPS 231 Query: 161 -----IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + +S+P + + + ++V +SF+ QIR VG + G T Sbjct: 232 AKRFIMSFTSSAPFHSPQGIE------FVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTR 285 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 LE+AL ++R + P+AP GL D+V Y Sbjct: 286 ITLERAL-TEERLDL-PMAPGLGLVLDTVHYE 315 >gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda melanoleuca] Length = 480 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 97/245 (39%), Gaps = 62/245 (25%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 68 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 124 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-----------------ISILNLSIVDKQFH 102 QV DL ++ + + ++SD I +L + V+ F Sbjct: 125 QVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 184 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y P++ LD M AAQ VG HDF + Sbjct: 185 ARFSCLERTYRY-----------------FFPRADLDIVTMNYAAQKYVGTHDFRNLCKM 227 Query: 162 HCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLK 206 A+ I RTI V G L + V ++FL+ Q+R + L Sbjct: 228 DV-ANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAILF 286 Query: 207 LVGDG 211 L+G G Sbjct: 287 LIGQG 291 >gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus] Length = 322 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 102/266 (38%), Gaps = 72/266 (27%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHA 57 + I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 74 LKIAYLGWGYQGFASQENTSN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSA 130 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISD-----------------TISILNLSIVDKQ 100 QV DL ++ + N + D I +L + V+ Sbjct: 131 FGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPS 190 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF- 158 F ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 191 FSARFSCLERTYRY-----------------FFPRADLDIATMNYAAQKYVGTHDFRNLC 233 Query: 159 ------------RSIHC-------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 R+I C Q+ R + F L + V+ ++FL+ Q+R Sbjct: 234 KMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPF------QLCQFEVIGQAFLYHQVR 287 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQ 225 + L L+G G +++ L Q Sbjct: 288 CMMAILFLIGQGMEKPEIIDELLNIQ 313 >gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca] Length = 479 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 97/245 (39%), Gaps = 62/245 (25%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 68 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 124 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-----------------ISILNLSIVDKQFH 102 QV DL ++ + + ++SD I +L + V+ F Sbjct: 125 QVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 184 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y P++ LD M AAQ VG HDF + Sbjct: 185 ARFSCLERTYRY-----------------FFPRADLDIVTMNYAAQKYVGTHDFRNLCKM 227 Query: 162 HCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLK 206 A+ I RTI V G L + V ++FL+ Q+R + L Sbjct: 228 DV-ANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAILF 286 Query: 207 LVGDG 211 L+G G Sbjct: 287 LIGQG 291 >gi|294949997|ref|XP_002786409.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC 50983] gi|239900701|gb|EER18205.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC 50983] Length = 427 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 115/283 (40%), Gaps = 71/283 (25%) Query: 10 YNGSGYFGWQRQKNG------SSIQGSIEKAIF---LVTGEIVVVHG------AGRTDSG 54 Y+G G G Q Q N S+I+G +KA+ L T EI+ A RTD G Sbjct: 81 YSGEGLKGMQIQTNEKGEEIHSTIEGIFQKALLATNLSTEEILADKKKLKFSRAARTDKG 140 Query: 55 VH------------------------ALRQVAHFDLVREWVPVILCKALNAYLKISDTIS 90 VH A R V FD + KALN +L+ + + Sbjct: 141 VHAALNILALALPVTLDKTLPQGEGDATRNVWTFDEKKN------VKALNDFLEPLN-MQ 193 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 + + V +F AR RR Y Y + AL+ G+A D + V Sbjct: 194 VFGIQRVSNKFDARKQCERRRYEYLL----PEFALD-GKA-------DAAKLEEVMSQYV 241 Query: 151 GRH-DFTTFRS-IHCQASSPIRTI-------DHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 G++ +F F + I + S R I D N+F I I++V +SFL QIR Sbjct: 242 GKNKNFFNFTAKIPAEDPSAKRHIISITCQPTEIDANTF---IRIQLVGQSFLLHQIRKM 298 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +G V G +E+ L A++RK LAP EGL+ D V Sbjct: 299 IGLAVEVCRGSAPEGAIEECLAAKERKHIH-LAPAEGLFLDRV 340 >gi|260062928|ref|YP_003196008.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] gi|88784496|gb|EAR15666.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] Length = 274 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 104/266 (39%), Gaps = 28/266 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + I + G + GWQ Q ++ G I K F++ V + GAGRTD+ V A R A Sbjct: 9 FLIRIAFLGFRFHGWQEQPGQRTVAGMIRKTFRFVLPDTPVKILGAGRTDARVSA-RDFA 67 Query: 63 HFDLVR--EWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + R E P +L ALN L I + ++ V F+ ++Y Y T Sbjct: 68 VQVIARAPELPPFGVLADALNENL--PPDIRVNSIRPVPPGFNPIRDCASKTYRYYFQTG 125 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF------------RSIHCQ--A 165 P A +P S D MR AA G H+F F R C+ Sbjct: 126 NHPDAYWTPFVGFLPGSPDITRMREAAPLFEGMHNFRCFTASPSEDKKYVRRVTRCRLGV 185 Query: 166 SSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 SP+ + D +++E+R A F Q+R + +L VG + L K Sbjct: 186 GSPMDGVVAGKDPEGDTGFTAHMLEVR--APGFGRNQVRLMMAALAAVGRQELQPETLVK 243 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 L + P GL+ VE+ Sbjct: 244 VLDEGQGWMSDSIVPASGLHLMHVEF 269 >gi|189236260|ref|XP_974416.2| PREDICTED: similar to pseudouridylate synthase [Tribolium castaneum] Length = 275 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 88/216 (40%), Gaps = 39/216 (18%) Query: 15 YFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVAHF 64 Y GW Q +IE +F + ++ H GRTD GV +L ++ Sbjct: 64 YLGWDYQGYVTQEDTVNTIEHHVFNALIKTCLIENRSSANYHRCGRTDKGVISLDLRSNG 123 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D + CK LN L + I + V+ F ARF R+Y Y Sbjct: 124 DDFES--EINYCKILNRVL--PENIQFVAWCPVESAFSARFDCKNRTYKY---------- 169 Query: 125 LEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSFG 181 PKS LD + M+IAA +LVG HDF F ++ R I D++ F Sbjct: 170 -------FFPKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNILSVDISLFQ 222 Query: 182 -----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 ++ + + +FL QIR VG L LVG GK Sbjct: 223 EDERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGK 258 >gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus] Length = 316 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 102/266 (38%), Gaps = 72/266 (27%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHA 57 + I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 68 LKIAYLGWGYQGFASQENTSN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSA 124 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISD-----------------TISILNLSIVDKQ 100 QV DL ++ + N + D I +L + V+ Sbjct: 125 FGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPS 184 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF- 158 F ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 185 FSARFSCLERTYRY-----------------FFPRADLDIATMNYAAQKYVGTHDFRNLC 227 Query: 159 ------------RSIHC-------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 R+I C Q+ R + F L + V+ ++FL+ Q+R Sbjct: 228 KMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPF------QLCQFEVIGQAFLYHQVR 281 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQ 225 + L L+G G +++ L Q Sbjct: 282 CMMAILFLIGQGMEKPEIIDELLNIQ 307 >gi|296005181|ref|XP_001351959.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] gi|225631808|emb|CAD51770.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] Length = 312 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 36/216 (16%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGEIVVVHGAGRTDSGVHA------L 58 +E+NGS Y ++ N ++++ + + ++ L+ + RTD GV A L Sbjct: 16 MEFNGSAY----QKDNDNTVENKLLENLYKLELIDNYDTPLSRVSRTDKGVSARINGINL 71 Query: 59 RQVAHFDLVREWVPV--ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 R ++ E VP+ I K + K I I ++ V F AR + I+R+Y+Y Sbjct: 72 R----LNIKYENVPIFEIEKKYVKELKKKLKNIHIHDIKHVSNTFDARLNCIQRTYVY-- 125 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + I K+ + E M+ AA+ +G HDF+ +S RT+ FD Sbjct: 126 --------------FFINKNYNIEKMKKAAKLFIGEHDFSNCCKKGKNVTSNRRTVLKFD 171 Query: 177 V-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 + N + ++ SFL+ QIR V L LVG G Sbjct: 172 IRNIDKHFYYFKIKGISFLYNQIRHMVAILFLVGKG 207 >gi|328873128|gb|EGG21495.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum] Length = 510 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 24/142 (16%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I +L + V F+ARFS + R+Y Y + P LD E M+ A H Sbjct: 217 IRVLAWTPVPFHFNARFSTLYRTYKY----------------YFNPAGLDIEAMKEAGNH 260 Query: 149 LVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSF-------GNLIEIRVVARSFLHTQIRS 200 +G HDF+ F I +A S R I FD+ G L E + +FL QIR Sbjct: 261 FLGSHDFSNFCKIDLEAVKSFTRVILSFDIAPVPVGQFQSGGLYEATICGYAFLWHQIRC 320 Query: 201 FVGSLKLVGDGKWTSTDLEKAL 222 + L L+G K+ +T ++ L Sbjct: 321 MMAMLLLIGQKKFPTTIIKDLL 342 >gi|91076290|ref|XP_968649.1| PREDICTED: similar to AGAP002409-PA [Tribolium castaneum] Length = 588 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 115/265 (43%), Gaps = 32/265 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 ++ +++ Y+G+ Y+G QR N +I+ KA++ + + A RTD Sbjct: 256 KFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQFQRAARTDK 315 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L RE + + +N L + I + + V K F+++ RSY Sbjct: 316 GVSAARQVVSLKL-REDIDI---SKINEQL--PEVIRVFGIRRVTKGFNSKVQCDSRSYT 369 Query: 114 YRI----ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP- 168 Y + T L ++KG L +L+ N + Q +G +F F S QA+ P Sbjct: 370 YLLPTVSFTPHDQLMVQKG-FRLDDSTLNRINDLL--QKYLGTKNFHNFTS-KKQATDPS 425 Query: 169 ----IRTI--DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 ++T+ + V I++ +SF+ QIR VG L V G +TS D Sbjct: 426 AKRYMKTLICEKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKG-YTSEDTLDLA 484 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 D+ P AP GL D V Y Sbjct: 485 FGMDKVNI-PKAPGLGLLLDYVHYE 508 >gi|207093371|ref|ZP_03241158.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_AG0C1] Length = 120 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + V+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSAVI-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 + W L YL I+ + +K FHARF A +R Y Y Sbjct: 67 KHWN----ASKLFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRVYRY 109 >gi|194899730|ref|XP_001979411.1| GG15313 [Drosophila erecta] gi|190651114|gb|EDV48369.1| GG15313 [Drosophila erecta] Length = 410 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 27/264 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L + + +A NA L I + + V K F+A+ R+Y Sbjct: 131 GVSAARQVCSVKLPED----LDLEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV------GRHDFTTFRSIHCQASS 167 Y + T EK + E ++ + L H+FT+ +S +S Sbjct: 185 YTLPTMAFAPFEEKVEDLHDTFQISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSK 244 Query: 168 ----PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + D F + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 245 RFIMSFTSSDPFRSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERAL- 303 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 ++R + P+AP GL D+V Y Sbjct: 304 TEERLDL-PMAPGLGLVLDTVHYE 326 >gi|207108295|ref|ZP_03242457.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_CA4C1] Length = 122 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 I Y+G+ + G+ +Q N +Q IE A+ + + V+ AGRTD GVHA QV F Sbjct: 8 IAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSAVI-AAGRTDKGVHANNQVLSFHAP 66 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + W L YL I+ + +K FHARF A +R Y Y ++T+ L Sbjct: 67 KHWN----ASKLFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRVYRY-LLTKNLKL 117 >gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus] Length = 481 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 101/264 (38%), Gaps = 72/264 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 70 IAYLGWGYQGFASQENTSN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 126 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISD-----------------TISILNLSIVDKQFH 102 QV DL ++ + N + D I +L + V+ F Sbjct: 127 QVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFS 186 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF--- 158 ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 187 ARFSCLERTYRY-----------------FFPRADLDIATMNYAAQKYVGTHDFRNLCKM 229 Query: 159 ----------RSIHC-------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 R+I C Q+ R + F L + V+ ++FL+ Q+R Sbjct: 230 DVANGVIDFQRTILCAQVQLVAQSPGEERRQEPF------QLCQFEVIGQAFLYHQVRCM 283 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQ 225 + L L+G G +++ L Q Sbjct: 284 MAILFLIGQGMEKPEIIDELLNIQ 307 >gi|152964686|ref|YP_001360470.1| tRNA-pseudouridine synthase I [Kineococcus radiotolerans SRS30216] gi|151359203|gb|ABS02206.1| tRNA-pseudouridine synthase I [Kineococcus radiotolerans SRS30216] Length = 252 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 22/216 (10%) Query: 48 AGRTDSGVHALRQVAHFDLVR---EWVP--------VILCKALNAYLKISDTISILNLSI 96 AGRTD+GVHA QVAH DL R E +P L + L L + + Sbjct: 24 AGRTDAGVHASGQVAHADLPRAVWEALPGRSDAPPAAALVRRLAGVLPPD--VRVHGARP 81 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI---PKSLDCENMRIAAQHLVGRH 153 F ARF A+RR Y YR+ P + R + + + LD M +AA LVG Sbjct: 82 APPGFDARFGALRRRYAYRVC--DDPAGVPPLRRFDVLHHRRPLDAAAMDLAAGSLVGLR 139 Query: 154 DFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +F F AS+ +RT+ + L+ V A +F H+ +R+ VG++ VGDG+ Sbjct: 140 EFAAFCRPREGAST-VRTLLAYSWRRDEDGLLVADVQADAFCHSMVRALVGAVLAVGDGR 198 Query: 213 WTSTDLEKALQ-AQDRKECGPLAPPEGLYFDSVEYS 247 D + +Q A R + P+GL + V Y Sbjct: 199 -RDVDWPRVVQDAAVRDPAVAVVGPQGLTLEEVVYP 233 >gi|227499255|ref|NP_075781.3| tRNA pseudouridine synthase 3 [Mus musculus] gi|52783242|sp|Q9JI38|PUS3_MOUSE RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus] gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus] Length = 481 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 101/264 (38%), Gaps = 72/264 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 70 IAYLGWGYQGFASQENTSN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 126 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISD-----------------TISILNLSIVDKQFH 102 QV DL ++ + N + D I +L + V+ F Sbjct: 127 QVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFS 186 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF--- 158 ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 187 ARFSCLERTYRY-----------------FFPRADLDIATMNYAAQKYVGTHDFRNLCKM 229 Query: 159 ----------RSIHC-------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 R+I C Q+ R + F L + V+ ++FL+ Q+R Sbjct: 230 DVANGVINFQRTILCAQVQLVAQSPGEERRQEPF------QLCQFEVIGQAFLYHQVRCM 283 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQ 225 + L L+G G +++ L Q Sbjct: 284 MAILFLIGQGMEKPEIIDELLNIQ 307 >gi|195391039|ref|XP_002054173.1| GJ24293 [Drosophila virilis] gi|194152259|gb|EDW67693.1| GJ24293 [Drosophila virilis] Length = 408 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 111/263 (42%), Gaps = 27/263 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + K + +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKVMLKHKWITEDSFEQVQIASFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E + +A NA L D I + + V K F+A+ R+Y Sbjct: 131 GVSAARQVCSVKLPEE----LDLQAFNADL--PDQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRI--ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIR 170 Y + I A + + IP L E + + G +F F S + S R Sbjct: 185 YTLPTIAFAAFDEQHEQETYRIPLKLQ-EVVNTTLKLYEGTKNFHNFTSKKNFLDPSAKR 243 Query: 171 TIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F ++ + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 244 YIMSFTCSAPFLSPQSIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLERAL-T 302 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 ++R + P+AP GL D+V Y Sbjct: 303 EERLDL-PMAPGLGLVLDTVHYE 324 >gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus] Length = 481 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 101/264 (38%), Gaps = 72/264 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 70 IAYLGWGYQGFASQENTSN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 126 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISD-----------------TISILNLSIVDKQFH 102 QV DL ++ + N + D I +L + V+ F Sbjct: 127 QVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFS 186 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF--- 158 ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 187 ARFSCLERTYRY-----------------FFPRADLDIATMNYAAQKYVGTHDFRNLCKM 229 Query: 159 ----------RSIHC-------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 R+I C Q+ R + F L + V+ ++FL+ Q+R Sbjct: 230 DVANGVINFQRTILCAQVQLVAQSPGEERRQEPF------QLCQFEVIGQAFLYHQVRCM 283 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQ 225 + L L+G G +++ L Q Sbjct: 284 MAILFLIGQGMEKPEIIDELLNIQ 307 >gi|310821765|ref|YP_003954123.1| tRNA pseudouridylate synthase [Stigmatella aurantiaca DW4/3-1] gi|309394837|gb|ADO72296.1| tRNA pseudouridylate synthase [Stigmatella aurantiaca DW4/3-1] Length = 252 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 92/210 (43%), Gaps = 17/210 (8%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 +Q ++E A+ TG V AGRTD GVHA QV L P L L A L Sbjct: 1 MQSTLE-AVLRSTGVPATVMPAGRTDRGVHARMQVVSLRLEAGDTPEALAARLPALLPPD 59 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLY------RIITRQAPLALEKG-RAWLIPKSLDC 139 + + + FHA++SA ++Y Y R+ P LE L +++ Sbjct: 60 --LGVCAVRRPPPSFHAQWSAAGKTYCYRVQLGGRVSETWRPYVLEAAEEPRLAQRAIAP 117 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFDVNSF-GNLIEIRVVARSFLHT 196 E + Q VG+ DF F + +SSP RT++ V+ G L EI++ SF Sbjct: 118 ERLAELLQGAVGQRDFWAFHA----SSSPRKPRTLESATVHELEGGLFEIQLRGDSFARY 173 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 Q+R VGS L G+ AL++ + Sbjct: 174 QVRYLVGSALLTAAGQLPEAQWRAALESAE 203 >gi|322490513|emb|CBZ25774.1| tRNA pseudouridine synthase A-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 525 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 30/188 (15%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKNGSSIQ--------------GS-------IEKAI 35 M RY + ++Y GS + GW QR +NG + GS +E+A+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNGKNGASAGSTATAAADYGAGSRHFAKVVLEEAL 189 Query: 36 FLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE--WVPVILCKALNAYL-KISDTISI 91 + V + A ++GV R H D+ E P + + +L + +++ Sbjct: 190 AVALDVPTVSIVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRTTLWLHQRRQPLAV 249 Query: 92 LNLSIVDKQ-FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 L+ Q FHAR + +RR Y YRI+ R AP + G W + + LD M+ A+ + Sbjct: 250 LSCHPCRNQDFHARHNGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLME 309 Query: 151 GRHDFTTF 158 G HD+ F Sbjct: 310 GTHDYGFF 317 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--- 225 IRT+D +V + I I V +SFL QIR+ V LK G G W +L+ A Q+ Sbjct: 415 IRTLDKIEVVRQEDEILIWFVGQSFLRHQIRNMVSVLKAGGHGLWDDQELQHAFQSGFEV 474 Query: 226 -----DRKECGPLAPPEGLYFDSVEY 246 R+ P AP GL VEY Sbjct: 475 SRKKFKRERLSP-APVHGLTLWDVEY 499 >gi|322368335|ref|ZP_08042904.1| tRNA pseudouridine synthase A [Haladaptatus paucihalophilus DX253] gi|320552351|gb|EFW93996.1| tRNA pseudouridine synthase A [Haladaptatus paucihalophilus DX253] Length = 263 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 94/244 (38%), Gaps = 31/244 (12%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHALRQVAHF 64 + Y+G ++G+QRQ + +++ S+ +++ + V G AGRTDSGV AL Q F Sbjct: 6 VAYDGRPFYGFQRQPDVPTVEDSLFESLRALGVADRVPDGYAAAGRTDSGVSALAQTVAF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P L A +++ + ++ FHA A R Y+Y +A L Sbjct: 66 ECPEWLTPSAFNSELPAEIRVWASADVV------PAFHATHDAYYREYVYHCYAPRANLG 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L K A+ L G HDF S +R + DV G + Sbjct: 120 LAKE----------------ASDRLSGEHDFHNLTS---DTEGTVRDL-GIDVVQDGEYL 159 Query: 185 EIRVVARSFLHTQIRSFVGSLKLV--GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 A F +R V + + GD + D A + D + P A LY Sbjct: 160 VFTFQAGGFARNLVRRVVSLIHSIATGDAEMAKIDTVLAPEPLDGRAGVPCASAHPLYLA 219 Query: 243 SVEY 246 V Y Sbjct: 220 DVGY 223 >gi|303391559|ref|XP_003074009.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC 50506] gi|303303158|gb|ADM12649.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC 50506] Length = 317 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 35/245 (14%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 I Y+G Y G Q ++ G +E A+ F GE +V AGRTD+GV A+ V Sbjct: 41 ISYDGRRYSGMAPQSGKETVGGHLENALKFTGLGEKLVY--AGRTDAGVSAISMVVSGVF 98 Query: 67 V-REWVP---VILCKA----------LNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 + R +P ++ ++ LN++L I ++ + V F ARF+ I+R Y Sbjct: 99 ISRIEMPNRSYVVTESDYKEYKYDMILNSHL--PSDIRVIGWAPVPDTFSARFTCIQRQY 156 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y + + LD + MR A + +F F + + R + Sbjct: 157 RY----------------YFHKEDLDADRMREMASRIKKMENFYYFSKHSDKNARYERKL 200 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D + G++ + + AR+FLH +R V +++ G G+ + + CG Sbjct: 201 DECRIVDEGDVYYLDIRARAFLHNMVRKIVWAIQKAGKGETYDAERVGTSEPDPLVFCGA 260 Query: 233 LAPPE 237 + P E Sbjct: 261 IYPHE 265 >gi|15790870|ref|NP_280694.1| tRNA pseudouridine synthase A [Halobacterium sp. NRC-1] gi|169236616|ref|YP_001689816.1| tRNA pseudouridine synthase A [Halobacterium salinarum R1] gi|24212587|sp|Q9HNP6|TRUA_HALSA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229470757|sp|B0R6V1|TRUA_HALS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|10581435|gb|AAG20174.1| pseudouridylate synthase I [Halobacterium sp. NRC-1] gi|167727682|emb|CAP14470.1| tRNA-pseudouridine synthase A [Halobacterium salinarum R1] Length = 266 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 97/255 (38%), Gaps = 35/255 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVH 56 M R + Y+G Y G+QRQ + S++ G + A+ + AGRTD+GV Sbjct: 1 MPRRAFRVAYDGRPYHGFQRQPDVSTVAGELFGALRRLDVFDGAKPPGYAAAGRTDAGVS 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q FD P AL D I + + +FHA A+ R+Y+Y Sbjct: 61 ARAQTVAFDAPAWLTPDAFTGAL------PDPIQVWAHADAPPEFHATHDAVARTYVYY- 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAA-QHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 W P S ++ A L G HD F ++ ++ +R +D Sbjct: 114 --------------WYAPDSRATDDRAAGALDRLTGTHD---FHNLTPNTTNTVRELDAT 156 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV---GDGKWTSTDLEKALQAQDRKECGP 232 ++ G I V A F +R V ++LV GD T L A + P Sbjct: 157 -LDRDGAFRVITVRAGGFCRELVRRVVSLVQLVTETGDTDRIDTVLGDEPVAG--PDGVP 213 Query: 233 LAPPEGLYFDSVEYS 247 A P L +V Y Sbjct: 214 PADPHPLVLHAVAYD 228 >gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis] Length = 455 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 94/235 (40%), Gaps = 56/235 (23%) Query: 14 GYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVAH 63 Y GW+ Q S + +IE+ +F G+ +V H GRTD GV A QV Sbjct: 71 AYLGWEYQGFASQENTNNTIEEKLFEALGKTRLVKNRQTSNYHRCGRTDKGVSAFGQVIS 130 Query: 64 FDLVREWVP------VILCKALNAYLKISDT----------ISILNLSIVDKQFHARFSA 107 DL R +P KA A +I T I +L + V+ F ARF+ Sbjct: 131 LDL-RSNLPENKPGDTATNKATKASEEIHYTHILNQVLPPDIRVLAWAPVEPNFSARFNC 189 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF------------ 155 ++R+Y Y P A +LD M AAQ VG HDF Sbjct: 190 LKRTYRYFF-----PCA-----------TLDVALMNRAAQKFVGTHDFRNLCKMDVANGV 233 Query: 156 TTF-RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 T+F R+I P+ + + + V ++FL+ Q+R + L L+G Sbjct: 234 TSFHRTILAAEVQPVDGESETEQQNPFRMYYFEVTGQAFLYHQVRCMMAILFLIG 288 >gi|302818580|ref|XP_002990963.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii] gi|300141294|gb|EFJ08007.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii] Length = 289 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 17/257 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-----------FLVTGEI--VVVHGAGR 50 + +++ Y+G+ + GWQ+Q ++Q +EK + G+I +V AGR Sbjct: 14 FKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQGKIKEALVSVAGR 73 Query: 51 TDSGVHALRQVAHF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GVHA QV F +RE + A+N+ + + ++ S V++ FH FSA Sbjct: 74 TDKGVHACGQVCSFYTWMRECKEEDVKSAVNSAMPT--ILRAVSASEVNRDFHPIFSAKW 131 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y+Y I ++ ++ + + ++L+ ++ A + ++ + C Sbjct: 132 RRYIY-IFPLRSRDEIDVSKVATLLRALEGHSLSYAIFARDTKIARSSGPATVCTLYHAR 190 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + N++ + +VA FL +R V + L ++ DR+ Sbjct: 191 AALAKLPFPNEENVMVVELVADRFLRKMVRVLVSTAIKEAFAGANDDALVALMEETDRRA 250 Query: 230 CGPLAPPEGLYFDSVEY 246 P AP GL V Y Sbjct: 251 SAPPAPAHGLCLAEVGY 267 >gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine synthase 3 [Callithrix jacchus] Length = 477 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 96/242 (39%), Gaps = 59/242 (24%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 68 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 124 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT--------------ISILNLSIVDKQFHARF 105 QV DL ++ + N + ++ I IL + V+ F ARF Sbjct: 125 QVISLDLRSQFPRRRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSARF 184 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 S + R+Y Y P++ LD M AAQ VG HDF + Sbjct: 185 SCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDV- 226 Query: 165 ASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLKLVG 209 A+ I RTI V G L + V ++FL+ Q+R + L L+G Sbjct: 227 ANGVINFQRTILSAQVQPVGQSPDEERWQVPFQLCQFEVTGQAFLYHQVRCMMAILFLIG 286 Query: 210 DG 211 G Sbjct: 287 QG 288 >gi|120436099|ref|YP_861785.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] gi|117578249|emb|CAL66718.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] Length = 262 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 121/262 (46%), Gaps = 25/262 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G GWQ+Q + +++G + K + +++ + G RTD+ V A + + Sbjct: 8 YFIKVQYLGYRLHGWQKQPDVKTVEGLVTKTLGWVIPDAKYKILGTSRTDAMVSA--EES 65 Query: 63 HFDLVREWVPVILCKALNAYL-----KISDTISILNLSIVDKQFHA-RFSAIRR-SYLYR 115 F+L + P+ + L+ +L + I L++ VD +F+ + S + +YL+ Sbjct: 66 AFELFLDHEPL---EDLDGFLHLFNKNLPQDIRALSIEEVDDKFNIIQHSKTKEYAYLFS 122 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--- 172 I + P + + LD + M+ AA+ G H+F + + S+ R + Sbjct: 123 IGDKFHPFCAPFMANF--QEDLDVDRMKEAAKLFHGIHNFRNYCIRVSEKSTFEREMLKS 180 Query: 173 -----DHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 D + N F I + A FL Q+R +GSL LVG G+ + D+E +L+ Sbjct: 181 ELVENDIYTANFFPEKSYIFHIHASGFLRHQVRLMMGSLVLVGRGELSLQDIEDSLKPDS 240 Query: 227 RK-ECGPLAPPEGLYFDSVEYS 247 + + +AP GL +E+ Sbjct: 241 PQLQMDYIAPASGLILRKIEFE 262 >gi|57237668|ref|YP_178916.1| tRNA pseudouridine synthase A [Campylobacter jejuni RM1221] gi|62901173|sp|Q5HUW9|TRUA_CAMJR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57166472|gb|AAW35251.1| tRNA pseudouridine synthase A [Campylobacter jejuni RM1221] gi|315058277|gb|ADT72606.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni S3] Length = 240 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+G+ + G Q + +Q ++ A+ + G + A RTD GVHA VA + Sbjct: 5 IIFSYDGTAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYAVASVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + L K LN + I I + V F RF R Y Y I + + Sbjct: 64 CGDYFTNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHSSYSP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 PK D + VG+ D F + +R I ++ + Sbjct: 121 FMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYKDFS 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY + Sbjct: 180 IFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLYLSRI 238 Query: 245 EY 246 Y Sbjct: 239 CY 240 >gi|77735971|ref|NP_001029684.1| tRNA pseudouridine synthase 3 [Bos taurus] gi|119391067|sp|Q3SX07|PUS3_BOVIN RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus] Length = 481 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 98/246 (39%), Gaps = 64/246 (26%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYLGWGYQGFASQENTSN---TIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVPVIL-CKALNAYLKISDT-----------------ISILNLSIVDKQF 101 QV DL R +P + N +++D I +L + V+ F Sbjct: 126 QVISLDL-RSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRS 160 ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 185 SARFSCLERTYRY-----------------FFPRANLDIVTMNYAAQKYVGTHDFRNLCK 227 Query: 161 IHCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSL 205 + A+ I RTI V G L + V ++FL+ Q+R + L Sbjct: 228 MDV-ANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVL 286 Query: 206 KLVGDG 211 L+G G Sbjct: 287 FLIGQG 292 >gi|296471772|gb|DAA13887.1| tRNA pseudouridine synthase 3 [Bos taurus] Length = 481 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 98/246 (39%), Gaps = 64/246 (26%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYLGWGYQGFASQENTSN---TIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVPVIL-CKALNAYLKISDT-----------------ISILNLSIVDKQF 101 QV DL R +P + N +++D I +L + V+ F Sbjct: 126 QVISLDL-RSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRS 160 ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 185 SARFSCLERTYRY-----------------FFPRANLDIVTMNYAAQKYVGTHDFRNLCK 227 Query: 161 IHCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSL 205 + A+ I RTI V G L + V ++FL+ Q+R + L Sbjct: 228 MDV-ANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVL 286 Query: 206 KLVGDG 211 L+G G Sbjct: 287 FLIGQG 292 >gi|146084629|ref|XP_001465060.1| tRNA pseudouridine synthase A-like protein [Leishmania infantum JPCM5] gi|134069156|emb|CAM67303.1| tRNA pseudouridine synthase A-like protein [Leishmania infantum JPCM5] Length = 525 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 30/188 (15%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKN-------GSSIQGS--------------IEKAI 35 M RY + ++Y GS + GW QR +N G++ + +E+A+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNSKDAAPAGNTTTAAADYGTGSRHFAKVVLEEAL 189 Query: 36 FLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISI 91 + V V A ++GV R H D+ E IL +A + +++ Sbjct: 190 AVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPLAV 249 Query: 92 LNLSIVDKQ-FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 L+ Q FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ + Sbjct: 250 LSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLME 309 Query: 151 GRHDFTTF 158 G HD+ F Sbjct: 310 GTHDYGFF 317 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--- 225 IRT+D +V + + I V +SFL QIR+ V +LK G G W +L+ A Q+ Sbjct: 415 IRTLDKIEVVRQEDEVLIWFVGQSFLRHQIRNMVSALKAGGHGLWDDQELQHAFQSGFEV 474 Query: 226 -----DRKECGPLAPPEGLYFDSVEY 246 R+ P AP GL VEY Sbjct: 475 SRKKFKRERLSP-APAHGLTLWDVEY 499 >gi|323454991|gb|EGB10860.1| hypothetical protein AURANDRAFT_58785 [Aureococcus anophagefferens] Length = 305 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 20/175 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFL-VTGEIVVVHGAGRTDSGVHALR 59 RY + + Y+G+ + GWQ Q G+ ++QG + A+ G + GA RTD+GVHA Sbjct: 33 TRYALRVAYDGTRFKGWQVQPGGARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARG 92 Query: 60 QVAHFDLVRE---WVPV-ILCKALNAYLKISDTISILNLSIVDKQFHAR--------FSA 107 Q AH DL P+ +L +N L + L + K + AR +A Sbjct: 93 QCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANA 152 Query: 108 IRRSYLYRIITRQA---PLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + Y YR+ R+ PL L +G + +D + A VG HDF F Sbjct: 153 AGKRYAYRLTARRGSADPLGRLYRGHVAY--RDVDFGRLDDALSCFVGEHDFAAF 205 >gi|322498495|emb|CBZ33568.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 525 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 30/188 (15%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKNGSSIQGS---------------------IEKAI 35 M RY + ++Y GS + GW QR +N + +E+A+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNSKDAAPAGNTATAAADYGTGSRHFAKVVLEEAL 189 Query: 36 FLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISI 91 + V V A ++GV R H D+ E IL +A + +++ Sbjct: 190 AVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPLAV 249 Query: 92 LNLSIVDKQ-FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 L+ Q FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ + Sbjct: 250 LSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLME 309 Query: 151 GRHDFTTF 158 G HD+ F Sbjct: 310 GTHDYGFF 317 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--- 225 IRT+D +V + + I V +SFL QIR+ V +LK G G W +L+ A Q+ Sbjct: 415 IRTLDKIEVVRQEDEVLIWFVGQSFLRHQIRNMVSALKAGGHGLWDDQELQHAFQSGFEV 474 Query: 226 -----DRKECGPLAPPEGLYFDSVEY 246 R+ P AP GL VEY Sbjct: 475 SRKKFKRERLSP-APAHGLTLWDVEY 499 >gi|242003078|ref|XP_002422603.1| tRNA pseudouridine synthase A, putative [Pediculus humanus corporis] gi|212505404|gb|EEB09865.1| tRNA pseudouridine synthase A, putative [Pediculus humanus corporis] Length = 410 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 117/262 (44%), Gaps = 32/262 (12%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGEIV----VVH--GAGRTDSGV 55 +++ YNGS Y G Q+ + +I+ + A+ L+ E + ++H A RTD GV Sbjct: 77 ALLMAYNGSNYHGMQKNLDFKTIEYELLNALVKANLIPSEAIDNLPLIHFQRAARTDKGV 136 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A +QV F + + + +N +L + I + ++ V K F+ + R+Y Y Sbjct: 137 SAAKQVVSFKIAENFQ----VEKINMFL--PEDIRVFSIKRVTKGFNCKNQCTARTYSYT 190 Query: 116 IIT-RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTI 172 + T AP E + + I K + I +Q+L G H F F S + S R I Sbjct: 191 LPTFALAPEFHDEYPKNYRIDKLTIQKTNEILSQYL-GTHPFHNFTSKKDGRDPSAKRYI 249 Query: 173 DHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-- 225 F+ + I ++V +SF+ QIR VG V G + +A+Q++ Sbjct: 250 MSFEAEEPFLENEEEFITLKVKGQSFMLHQIRKMVGYTIAVMKGFAS-----EAIQSKIW 304 Query: 226 -DRKECGPLAPPEGLYFDSVEY 246 + K P+AP GL + V Y Sbjct: 305 TNEKVSLPMAPGLGLVLEDVHY 326 >gi|167590068|ref|ZP_02382456.1| tRNA pseudouridine synthase A [Burkholderia ubonensis Bu] Length = 77 Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 41/64 (64%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFD 65 HFD Sbjct: 61 VHFD 64 >gi|328777716|ref|XP_393954.4| PREDICTED: tRNA pseudouridine synthase 3-like [Apis mellifera] Length = 400 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 105/258 (40%), Gaps = 58/258 (22%) Query: 15 YFGWQRQKNG----SSIQGSIEKAIF--------LVTGEIVVVHGAGRTDSGVHALRQVA 62 Y GW NG SI +IE+ +F + + E H GRTD GV + QV Sbjct: 63 YLGWDY--NGFVVQESIDNTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVSSFSQVI 120 Query: 63 HFDLVREWVP---------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 D+ + P + CK LN L I + V F ARF+ R+Y Sbjct: 121 SLDIRSKLNPEDQYKLEDELPYCKILNRLL--PSNIRCIAWCPVPNDFSARFNCKFRTYK 178 Query: 114 YRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIR 170 Y P+ +L+ + M A ++++G HDF + + IR Sbjct: 179 Y-----------------FFPRGNLNIDAMNKAVKYIIGEHDFRNICKMDVANGVINYIR 221 Query: 171 TIDHFDVNSFG---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + + +V + ++ ++ + +++FL QIR +G L L+G+GK + E Sbjct: 222 KVINAEVRMYRQDFRNISGYDMYQLIITSQAFLWHQIRCLMGVLFLIGEGK---EEAEIM 278 Query: 222 LQAQDRKECGPLAPPEGL 239 L+ D + C P P L Sbjct: 279 LELLDIENC-PKKPQYNL 295 >gi|57085889|ref|XP_536533.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine isomerase 3) (tRNA pseudouridylate synthase 3) [Canis familiaris] Length = 480 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 96/244 (39%), Gaps = 60/244 (24%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 68 IAYLGWGYQGFASQENTNN---TIEEKLFDALTKTRLVESRQTSNYHRCGRTDKGVSAFG 124 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-----------------ISILNLSIVDKQFH 102 QV DL + + N +++D I +L + V+ F Sbjct: 125 QVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 184 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF--- 158 ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 185 ARFSCLERTYRY-----------------FFPRADLDIITMNYAAQKYVGTHDFRNLCKM 227 Query: 159 ----------RSI-HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 R++ Q +++D L + VV ++FL+ Q+R + L L Sbjct: 228 DVANGVINFQRTVLFAQVELVGQSLDKEQWQEPFQLCQFEVVGQAFLYHQVRCMMAILFL 287 Query: 208 VGDG 211 +G G Sbjct: 288 IGQG 291 >gi|255566350|ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis] gi|223536579|gb|EEF38224.1| pseudouridylate synthase, putative [Ricinus communis] Length = 443 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 16/127 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---------IVVVHG----A 48 + + + + Y+G + GWQ+Q +++QG +EK++ E + G A Sbjct: 120 VNFKIDLSYHGGSFDGWQKQPGLNTVQGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVA 179 Query: 49 GRTDSGVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV ALRQV F R+ V P + A+N+ I ++++S V + FH FSA Sbjct: 180 GRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINS--SAPGKIRVISVSEVSRVFHPNFSA 237 Query: 108 IRRSYLY 114 R YLY Sbjct: 238 KWRRYLY 244 >gi|157415094|ref|YP_001482350.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81116] gi|172047118|sp|A8FLN6|TRUA_CAMJ8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157386058|gb|ABV52373.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 81116] gi|284926072|gb|ADC28424.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni IA3902] gi|307747736|gb|ADN91006.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni M1] gi|315927713|gb|EFV07042.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315931164|gb|EFV10137.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 327] Length = 240 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 98/242 (40%), Gaps = 7/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + +Q ++ A+ + G + A RTD GVHA VA + Sbjct: 5 IIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYAVASVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + L K LN + I I + V F RF R Y Y I + + Sbjct: 64 CGDYFTNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHASYSP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 PK D VG+ D F + +R I ++ + Sbjct: 121 FMASYVHFYPK-FDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYKDFS 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY + Sbjct: 180 IFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLYLSRI 238 Query: 245 EY 246 Y Sbjct: 239 CY 240 >gi|171741245|ref|ZP_02917052.1| hypothetical protein BIFDEN_00320 [Bifidobacterium dentium ATCC 27678] gi|171276859|gb|EDT44520.1| hypothetical protein BIFDEN_00320 [Bifidobacterium dentium ATCC 27678] Length = 219 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 30/202 (14%) Query: 71 VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE-KGR 129 VP ++ + + I+I ++ + F ARFSA+ R+Y+YRI R + + +G Sbjct: 3 VPPVVALTRRLQRMLPNDITIHGINEAPQGFDARFSALERTYVYRIADRSSEIDPRMRGF 62 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS------------PIRTI----- 172 + LD E M AA +G HDF +F + + ++ P R + Sbjct: 63 VLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNPGGTTIREVKTAYWRRIPQRPLVDGEM 122 Query: 173 ---DHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQA 224 + + S L +VA +F +RS V VG GK W + + L+ Sbjct: 123 TMGERYRTPSMESGLACFTIVADAFARNMVRSLVNGCVQVGIGKRSLDWFADKMATPLR- 181 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 GP+A P+GL + +EY Sbjct: 182 --EGSTGPIA-PQGLTLEHIEY 200 >gi|149716663|ref|XP_001505142.1| PREDICTED: pseudouridylate synthase 3 [Equus caballus] Length = 479 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 102/259 (39%), Gaps = 62/259 (23%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 67 IAYLGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 123 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-----------------ISILNLSIVDKQFH 102 QV DL + + N +++D I +L + V+ F Sbjct: 124 QVISLDLRSHFPNGRDSEDFNLKDEVNDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 183 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y P++ LD M AAQ VG HDF + Sbjct: 184 ARFSCLERTYRY-----------------FFPRADLDIITMNSAAQKYVGTHDFRNLCKM 226 Query: 162 HCQASSPI---RTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLK 206 A+ I RTI V G L + V+ ++FL+ Q+R + L Sbjct: 227 DV-ANGVINFQRTILSAQVQLVGQSLAEERGQEPFQLCQFEVIGQAFLYHQVRCMMAILF 285 Query: 207 LVGDGKWTSTDLEKALQAQ 225 L+G G +++ L Q Sbjct: 286 LIGQGMEKPEVIDELLNIQ 304 >gi|157868264|ref|XP_001682685.1| tRNA pseudouridine synthase A-like protein [Leishmania major] gi|68126140|emb|CAJ07193.1| tRNA pseudouridine synthase A-like protein [Leishmania major strain Friedlin] Length = 525 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 30/188 (15%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKN-------GSSIQGS--------------IEKAI 35 M RY + ++Y GS + GW QR +N G++ + +E+A+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNNKDAAPVGNTATAAADYGAGSRHFAKVVLEEAL 189 Query: 36 FLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISI 91 + V V A ++GV R H D+ E IL +A + +++ Sbjct: 190 GVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPLAV 249 Query: 92 LNLSIVDKQ-FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 L+ Q FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ + Sbjct: 250 LSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLME 309 Query: 151 GRHDFTTF 158 G HD+ F Sbjct: 310 GTHDYGFF 317 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--- 225 IRT+D +V + + I V +SFL QIR+ V LK G G W +L+ A Q+ Sbjct: 415 IRTLDKIEVVRQEDEVLIWFVGQSFLRHQIRNMVSVLKAGGHGLWDDQELQHAFQSGFEV 474 Query: 226 -----DRKECGPLAPPEGLYFDSVEY 246 R+ P AP GL VEY Sbjct: 475 SRKKFKRERLSP-APVHGLTLWDVEY 499 >gi|298229126|ref|ZP_06962807.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19F] Length = 57 Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVH 56 M RY I Y+G + G+QRQ + S+Q IEK + L G+ + VHGAGRTDSGVH Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVH 57 >gi|195113035|ref|XP_002001075.1| GI22173 [Drosophila mojavensis] gi|193917669|gb|EDW16536.1| GI22173 [Drosophila mojavensis] Length = 401 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 72/271 (26%), Positives = 110/271 (40%), Gaps = 43/271 (15%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDS 53 + +++ Y G+ Y+G QR +I+ + KA+ +I A RTD Sbjct: 71 KSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E + +A N L + I I + V K F+A+ R+Y Sbjct: 131 GVSAARQVCSVKLPEE----LDLEAFNKDL--PEQIRIFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRS-IH 162 Y + T +A D E RI + L G +F F S + Sbjct: 185 YTLPT----IAFA-----AFDDQHDQETYRIPIERLEKVSATLKLYEGTKNFHNFTSKKN 235 Query: 163 CQASSPIRTIDHFDVNS------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 S R I F ++ + ++V +SF+ QIR VG + G T+ Sbjct: 236 FLDPSAKRFIMSFTCSTPFLSPQSVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTA 295 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 LE+AL ++R + P+AP GL D+V Y Sbjct: 296 TLERAL-TEERLDL-PMAPGLGLVLDTVHYE 324 >gi|312378112|gb|EFR24771.1| hypothetical protein AND_10418 [Anopheles darlingi] Length = 376 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 58/255 (22%) Query: 15 YFGWQRQ---KNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDSGVHALRQVAH 63 Y GW Q SI+ +IE +F ++ ++ GRTD GV A QV Sbjct: 81 YLGWDYQGFAAQEDSIE-TIEHHLFTALQKVCLIESRETSNYNRCGRTDKGVSAFHQVIS 139 Query: 64 FDLVREWVP-------------VILCKALNAYLKISDTISILN-LSIVDKQFHARFSAIR 109 D+ + P + C LN L + I L + +V+ + ARF Sbjct: 140 IDVRSKIAPEDDQLSEDSLATELDYCGMLNRVL--PEEIRCLAWMPMVNPGYSARFDCRS 197 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-- 166 R+Y Y P+ +L + M+ A +HLVG HDF + Sbjct: 198 RTYRY-----------------FFPRGNLRIDAMQEACRHLVGAHDFRNLCKMDVGNGVV 240 Query: 167 SPIRTID-------HFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + +R+ID D + G +++ +++ ++FL Q+R + L LVGDGK T Sbjct: 241 NFVRSIDECTIHASQTDSSGMGSYDMMYLQLRGKAFLWHQVRCIMAVLLLVGDGKEDPTI 300 Query: 218 LEKALQAQDRKECGP 232 +++ L DR C P Sbjct: 301 VKELLDV-DRNPCKP 314 >gi|171184695|ref|YP_001793614.1| tRNA pseudouridine synthase ACD [Thermoproteus neutrophilus V24Sta] gi|229470755|sp|B1YAT9|TRUA_THENV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170933907|gb|ACB39168.1| tRNA-pseudouridine synthase I [Thermoproteus neutrophilus V24Sta] Length = 255 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 34/244 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y I Y+G+ ++G+ S++ + +A+ V G RTD GV A+ V Sbjct: 3 YLYRIAYDGTLFYGFTGHPR--SLEPHLRRALGDVLGR------GSRTDPGVSAVGNVV- 53 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + + A K+ + + + V + F+ R A R YLY AP Sbjct: 54 -------MTSAKVQPAAANSKLPRGVWVWAAAEVPEGFNPR-RARSRHYLY-----VAPH 100 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 E D ++MR AA+ L G HD+ +F + +S + TI V + G+L Sbjct: 101 WGE-----------DLDSMREAAELLAGTHDYASFVQRRGEPASTVTTIFSITVETRGDL 149 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + V R F + IR ++ G G D+ L+ + + P AP EGL Sbjct: 150 VFLHFVGRGFRNKMIRKLAWAILAAGRGVLRKRDIADLLE-RPKPGAVPSAPAEGLVLLD 208 Query: 244 VEYS 247 ++Y Sbjct: 209 IDYG 212 >gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens] Length = 481 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 96/245 (39%), Gaps = 62/245 (25%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVPVILCKALNAYLK-----------------ISDTISILNLSIVDKQFH 102 QV DL ++ + LN + + I IL + V+ F Sbjct: 126 QVISLDLRSQFPRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 185 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y P++ LD M AAQ VG HDF + Sbjct: 186 ARFSCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 HCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLK 206 A+ I RTI V G L + V ++FL+ Q+R + L Sbjct: 229 DV-ANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILF 287 Query: 207 LVGDG 211 L+G G Sbjct: 288 LIGQG 292 >gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545] Length = 281 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 100/271 (36%), Gaps = 59/271 (21%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGS--IEKAIFLV-----------TGEIVVVHGAGRTDSG 54 + Y G Y G+ Q N ++ S IE A+F T V GRTD+G Sbjct: 22 VAYAGWDYHGFASQGNDAAEARSPTIEGALFAALKRTRLIADDATWTDVDYTRCGRTDAG 81 Query: 55 VHALRQVAHF-------------------DLVREWVPVILCKALNAYLKISDTISILNLS 95 V A+ Q+ D P IL +AL D I + Sbjct: 82 VSAMGQLVSLRARSRGTRYTPPSPPPPAKDADELDYPSILNRAL------PDDIRVTGWC 135 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 VD+ F ARF R Y Y L G LD E MR AA+ L G HDF Sbjct: 136 YVDEAFSARFDCEWRHYKYF-------FTLHDG-------GLDLEKMRDAARRLEGEHDF 181 Query: 156 TTF-----RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 F +++H A + + + L I V +FL Q+R L LVG Sbjct: 182 RNFCKMDVKNVHNHARRILESASSSASGAPPRLCYISVKGTAFLWHQVRCVAAVLFLVGL 241 Query: 211 GKWTSTDLEK--ALQAQDRKECGPLAPPEGL 239 GK + ++ L+ RK +AP E L Sbjct: 242 GKEPPSVIDDLLDLEKTTRKPQYEMAPEEPL 272 >gi|89890078|ref|ZP_01201589.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] gi|89518351|gb|EAS21007.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] Length = 267 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 13/257 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y + ++Y G + GWQ+Q + +++ +++ + F++ V AGRTD+ V Sbjct: 9 LYYLIKLQYLGFRFHGWQKQPDVPTVEKMVKRTLRFVLDHHNFKVLAAGRTDARVSVNET 68 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + L E + + N L + I L++ + QF+ + Y+Y Sbjct: 69 IIELFLDDEALNLDTFLAEFN--LNLPSDIRALDIEETNAQFNVIQHPKEKEYIYLFSHG 126 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + LD E M+ AA+ G H+F ++ + + T++ H + Sbjct: 127 EKFHPFCASLMVYMKTELDIELMKTAARLFEGTHNFWSYTYKPSDTTDTVSTVNSCHIEE 186 Query: 178 NSF--GNLIE-----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 N+ N RV F Q+R +G+L +G K T D + L + Sbjct: 187 NNLFTANFFPEESFVFRVTGMGFKRHQVRLMMGALFDLGMHKITLEDFKATLDGSKKIHL 246 Query: 231 GPLAPPEGLYFDSVEYS 247 +AP GL +E S Sbjct: 247 SHIAPASGLMLYRMELS 263 >gi|313223412|emb|CBY40401.1| unnamed protein product [Oikopleura dioica] Length = 307 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 89/224 (39%), Gaps = 37/224 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIV-----------VVHGAGRTD 52 ++I Y G Y G Q + +IEK +F LV ++V RTD Sbjct: 85 ILISYCGKNYHGLQHNPGDDKVD-TIEKRVFQALVAAKVVYSNVINDRKKCAYQSCSRTD 143 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ VA +P LC+ +NA+L D I + + V K F A+ R+Y Sbjct: 144 KGVSAIGNVASLKCK---IPKNLCELVNAHL--PDDIRLTSFEQVTKGFCAKKRCTHRTY 198 Query: 113 LYRIITRQAPLALEKGRAWLIPKSL-----DCENMRIAAQHLVGRHDFTTFRSIHCQA-S 166 Y T + W P S E +R + +G + F S Q Sbjct: 199 SYYCPT----ICFGSKEDWDRPSSFRISAEKLEGVRELLKKYIGTRSYHNFTSGKRQGDE 254 Query: 167 SPIRTI-------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 S R I D F N + +E+RVV +SF+ QIR VG Sbjct: 255 SAKRHILDFRIQGDPFICNEW-EYVELRVVGQSFMIHQIRKMVG 297 >gi|325186551|emb|CCA21092.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14] Length = 493 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 115/295 (38%), Gaps = 77/295 (26%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIF-------LVTG-EIVVVHGAGRTDSGVHALRQV 61 Y+G Y G+ RQ + I+ +IEK +F L+T + GRTD GV A QV Sbjct: 86 YSGERYCGFARQDH---IEETIEKYLFDTMQRTKLITSIDDCCYSRCGRTDKGVSAFGQV 142 Query: 62 AHFDLVREWVPV------------------ILCKALNAYLK--------------ISDTI 89 VR VP+ + K + ++ + I Sbjct: 143 IGIK-VRSNVPIDAELLDVDSLDQVASGGRVRVKTQDGRIRKITEVDYAASLNRTLPSDI 201 Query: 90 SILNLSIVDKQFHARFSAIR-RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 + ++ F ARF+ R RSY Y + + K LD E MR+AA Sbjct: 202 RVYSVVNAPNNFSARFNCDRGRSYRY----------------FFMKKDLDIEKMRLAAIG 245 Query: 149 LVGRHDFTTFRSI--HCQA------SSPIRTIDHF-DVNSFGNLIEIRVVARSFLHTQIR 199 G HDF F I +CQ S I++ D D N + + + +FL Q+R Sbjct: 246 FEGLHDFRNFCRIDTNCQTFDRNVRSFKIKSSDEIGDKNPYRQMYYFEIHGNAFLWHQVR 305 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLY-----FDSVEYS 247 V L L+G G+ + ++K L + RK +AP L FDS+ + Sbjct: 306 CMVSILFLIGQGREEPSIVKKMLDIEKYPRKPQYAIAPDHPLVLHDCRFDSINFD 360 >gi|38639411|gb|AAR25833.1| tRNA pseudouridine synthase A [Buchnera aphidicola (Tetraneura caerulescens)] Length = 107 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 51/92 (55%) Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F+ FR+ +CQ+ + R I D+ + I + A +FL+ +R+ VGSL VG + Sbjct: 1 FSGFRAKNCQSKTAFRKIIRLDIFRKNFFVIIEIEANAFLYKMVRNIVGSLIEVGLKRKN 60 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + ++ L++++RK GP A GLY V+Y Sbjct: 61 VSWIDTILKSKNRKLSGPTASANGLYLVYVDY 92 >gi|76156463|gb|ABA40375.1| SJCHGC06804 protein [Schistosoma japonicum] Length = 334 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 114/268 (42%), Gaps = 40/268 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTDSGV 55 +++ Y+G GY+G QR +I+G + KA+F G++V V A +TD V Sbjct: 51 ILMMYSGWGYYGMQRGPIYPTIEGELSKALF-TCGQLVNVTSEEHKKVNFQRASKTDKYV 109 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL QV L + L LN L I IL++ V + F + S R Y Y Sbjct: 110 SALGQVCSLKLYDD---ADLLNKLNTAL--PQDIRILDIIRVTRSFSSYNSCTHRVYDYL 164 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV----------GRHDFTTFRSIHCQA 165 + T AL G L + C R+ A+ + G H+F F S Sbjct: 165 LPT----FALSSGNLSLSDST--CWTYRVTAEKITKLNNLLERYKGTHNFYNFTSGRLPT 218 Query: 166 SSP----IRTIDHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 I++++ G IR++ +SF+ Q+R +G + + G + + D+ Sbjct: 219 DKSCYRHIKSVECIPTFLLGEHEYTVIRIIGQSFMLHQVRKMIGLVLGILRG-YATEDVF 277 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 + ++R + P AP GL + V++S Sbjct: 278 DIVFCKERVDI-PKAPGLGLMLNQVDFS 304 >gi|322786132|gb|EFZ12740.1| hypothetical protein SINV_14818 [Solenopsis invicta] Length = 444 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 100/253 (39%), Gaps = 55/253 (21%) Query: 15 YFGWQ------RQKNGSSIQ----GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 Y GW ++ N ++I+ ++ K+ + + E H GRTD GV + QV Sbjct: 100 YLGWDYHGFTVQEDNCNTIEHHLFAALLKSCCIESRESANYHRCGRTDKGVSSFSQVISL 159 Query: 65 DLVREWVP---------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 D+ + P + CK LN L + I + V F ARF R Y Y Sbjct: 160 DIRSKLAPEDQGNLSNELPYCKMLNRLLPTN--IRCVAWCPVASNFSARFDCKYRRYKY- 216 Query: 116 IITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDF------------TTFRSIH 162 P+ +LD + M AA+++VG HDF F+ Sbjct: 217 ----------------FFPRGNLDIDAMNKAAKYVVGDHDFRNICKMDVANGIINFKRTV 260 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 A + ++ ++ E+ + +++FL QIR +G L LVG K + E L Sbjct: 261 IDAKVSFVNEQSMEKSTGYDMCELEITSQAFLWHQIRCLMGILLLVGQRK---EEPEVIL 317 Query: 223 QAQDRKECGPLAP 235 + D + C P P Sbjct: 318 KLLDTETC-PQKP 329 >gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] Length = 426 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 81/192 (42%), Gaps = 22/192 (11%) Query: 49 GRTDSGVHALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFS 106 GRTD GV A+ QV ++ E P+ C LN L + I ++ S + F ARFS Sbjct: 126 GRTDKGVSAMGQVVSLNVRYSEERPIAYCDVLNRLL--PEDIRVIAYSPNPPEGFDARFS 183 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--Q 164 +RR Y Y + +Q P LD E M AA +G HDF F I Q Sbjct: 184 CVRRHYKY-LFLKQYPGG-----------ELDIERMSQAAALYLGEHDFRNFCKIDASKQ 231 Query: 165 ASSPIRTIDHFD---VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 ++ R I H V+ L + +FL Q+R + L LVG D+ Sbjct: 232 ITNYNRGILHSKIICVDPQKQLYAFDLQGTAFLWHQVRCMMAILFLVGQ-HLEPVDIVSE 290 Query: 222 LQAQDRKECGPL 233 L ++ C P+ Sbjct: 291 LLNVEKNPCKPV 302 >gi|288560959|ref|YP_003424445.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium M1] gi|288543669|gb|ADC47553.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium M1] Length = 290 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 104/249 (41%), Gaps = 48/249 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + K ++ + AGRTD+GVH Sbjct: 1 MKRTALKIAYIGTHFHGFQRQPDVRTVEEELIYHLRKLEYIDDLKASRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +N L D I I+ + V F RF A RR Y Y Sbjct: 61 SLGNVISFQSEKE----VRVNQINNSL--PDDIQIIAWAPVRFGFKPRF-AKRRWYRY-- 111 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---------RSIH-CQAS 166 L + LD + +R A+ G HDFT F R+I + + Sbjct: 112 --------------ILFEEDLDIDLLRKTAEVFKGTHDFTNFTKRKQKTTVRTIEDIRIT 157 Query: 167 SPIRTIDHFDVN---SFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 PI ID D N F +L I + + SFL +R + V GK T D Sbjct: 158 KPI--IDEEDKNKKSDFAHLNKSYSPIFVDIYGESFLWNMVRKMMRIFLDVNYGKLTLDD 215 Query: 218 LEKALQAQD 226 +E+ L ++ Sbjct: 216 VERLLNPEE 224 >gi|312093536|ref|XP_003147717.1| hypothetical protein LOAG_12156 [Loa loa] gi|307757118|gb|EFO16352.1| hypothetical protein LOAG_12156 [Loa loa] Length = 414 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 97/249 (38%), Gaps = 71/249 (28%) Query: 15 YFGWQ------RQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 YFGW+ +Q+ +I+ + KA+ + + E + GRTD GV A +QVA Sbjct: 40 YFGWEYNGLVEQQEIAGTIEEEMRKALMKTKLVESWENCGWNRCGRTDKGVSAFKQVASL 99 Query: 65 DLVREWVP----------------------VILCKALNAYLKISDTISILNLSIVDKQFH 102 +VR P + K LN+ L + I +L + V + F Sbjct: 100 -IVRSNEPEGEGVFWPAIAHTSSETAVKGELQYVKMLNSTLPTN--IRVLAWAPVPENFS 156 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 AR+ +R+Y Y P A + D E MR A Q LVG HDF F I Sbjct: 157 ARYRCTQRTYTYAF-----PRA-----------NFDIEAMRQACQFLVGEHDFRNFCRID 200 Query: 163 CQAS----SPIRTIDHFDVNSFGN----------------LIEIRVVARSFLHTQIRSFV 202 + IRTI + D++ N +++ V FL QIR + Sbjct: 201 MNKGRVEMNYIRTISYADISLISNNSLLASKQSDEVTHYEFLQLTVKGSGFLWHQIRCIM 260 Query: 203 GSLKLVGDG 211 L +G G Sbjct: 261 ALLCEIGLG 269 >gi|195498243|ref|XP_002096440.1| GE25055 [Drosophila yakuba] gi|194182541|gb|EDW96152.1| GE25055 [Drosophila yakuba] Length = 410 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 112/270 (41%), Gaps = 39/270 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGE------IVVVHGAGRTDS 53 + +++ Y G+ ++G QR +I+ + K + +T E I A RTD Sbjct: 71 KSAILLSYCGANFYGMQRNPGMQTIEEELFKVMLKHKWITEESFEQIQISCFQRAARTDK 130 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A RQV L E + +A NA L I + + V K F+A+ R+Y Sbjct: 131 GVSAARQVCSVKLPEE----LDLEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYT 184 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL------VGRHDFTTFRS------- 160 Y + T EK + E ++ + L H+FT+ +S Sbjct: 185 YTLPTVAFASFEEKVEDLHDTFQISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSK 244 Query: 161 ---IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + +S P R+ + + + V +SF+ QIR VG + G T+ Sbjct: 245 RFIMSFTSSEPFRSPQGIE------FVTLNVKGQSFMLHQIRKMVGLAIAIVRGNTTAAT 298 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 LE+AL ++R + P+AP GL D+V Y Sbjct: 299 LERAL-TEERLDL-PMAPGLGLVLDTVHYE 326 >gi|150403192|ref|YP_001330486.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C7] gi|150034222|gb|ABR66335.1| tRNA pseudouridine synthase [Methanococcus maripaludis C7] Length = 262 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 39/245 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGR--LSFQTQPHGETVCDKISNALLDCGYLDDKDRVPLYHGGRTDRGVSALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR-RSYLYRIIT 118 +++ ++ PV+ + + LK D I +L +D F I R Y Y + Sbjct: 60 NYIVYEMDKK--PVL--PRVQSNLK-KDGIWVLGCKEIDT-----FPEIEYRHYQYNLPN 109 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDV 177 K+ D E M+ A++ L+G H F + + P+RT+ + Sbjct: 110 ----------------KNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLHDIKI 153 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGPLA 234 +S I I + SFL +R + L VG K+ D EK ++ ++D + P + Sbjct: 154 SSNDYFITIDIFGESFLWNMVRRIIRLLSDVGKHKF--EDPEKFIELILSKDYNKGYPPS 211 Query: 235 PPEGL 239 P EGL Sbjct: 212 PAEGL 216 >gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta] Length = 480 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 96/245 (39%), Gaps = 62/245 (25%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 68 IAYMGWGYQGFASQENTNN---TIEEKLFEALSKTRLVESRQTSNYHRCGRTDKGVSAFG 124 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-----------------ISILNLSIVDKQFH 102 QV DL ++ + N + + T I IL + V+ F Sbjct: 125 QVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 184 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y P++ LD M AAQ VG HDF + Sbjct: 185 ARFSCLERTYRY-----------------FFPRADLDIVAMDYAAQKYVGTHDFRNLCKM 227 Query: 162 HCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLK 206 A+ I RTI V G L + V ++FL+ Q+R + L Sbjct: 228 DV-ANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILF 286 Query: 207 LVGDG 211 L+G G Sbjct: 287 LIGQG 291 >gi|261333810|emb|CBH16805.1| tRNA pseudouridine synthase A-like protein,putative [Trypanosoma brucei gambiense DAL972] Length = 588 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 44/202 (21%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDS- 53 + RY + ++Y G+ + GW RQ + + GSI + G I GA R ++ Sbjct: 184 LTRYRVDVQYQGNDFDGWWKSTTRQLFRREVGLDGSITRVPVAEPGTIGNAAGASRGETM 243 Query: 54 ---------------------------------GVHALRQVAHFDLVR--EWVPVILCKA 78 GV R H D+ E P + + Sbjct: 244 GSRYHARTVLEEALAVALDVNTVRVVAGVIPEVGVSVRRLCCHVDVPSHIELQPRTVIQR 303 Query: 79 LNAYL-KISDTISILNLSIVDKQ-FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 ++ K ++IL+ Q FHAR S +RR Y+YRI+ R AP + G W + + Sbjct: 304 ATMWMEKRQQPLAILSYRRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAGLQWHVDRH 363 Query: 137 LDCENMRIAAQHLVGRHDFTTF 158 LD + M+ A+ L G DF F Sbjct: 364 LDVDRMKRFAKALEGTKDFGYF 385 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 7/85 (8%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA---- 224 +RT+D DV + + I V RSFL QIR+ V LK G G W +L++ALQ+ Sbjct: 478 VRTVDRLDVVRQDDEVLIWFVGRSFLRHQIRNMVSVLKAAGHGLWNDLELQQALQSGFEP 537 Query: 225 ---QDRKECGPLAPPEGLYFDSVEY 246 + ++E P AP GL VEY Sbjct: 538 SRHRFKRERFPTAPAYGLTLWDVEY 562 >gi|156537085|ref|XP_001602396.1| PREDICTED: similar to pseudouridylate synthase [Nasonia vitripennis] Length = 421 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 48/228 (21%) Query: 10 YNGSGYFGWQRQKNGSS-----IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 Y G Y G+ Q++ +S + ++ K+ + + E H GRTD GV A QV Sbjct: 79 YLGWDYQGFAAQEDTTSTIEYYLFAALTKSCLIESRETSNYHRCGRTDKGVSAFSQVISL 138 Query: 65 DLVREWVP---------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 D+ P + CK LN L I + S + ARF RSY Y Sbjct: 139 DIRSRLEPEKQDNLSDELHYCKMLNRLL--PKNIRCFSWSPAHPEMSARFDCKFRSYKY- 195 Query: 116 IITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTT-------------FRSI 161 P+ +L+ E M AA+ VG HDF FR+I Sbjct: 196 ----------------FFPRGNLNIEAMDKAAKLTVGSHDFRNLCKMDVANGVVNFFRNI 239 Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + I+ D ++ + ++ E+ + + +FL QIR +G L LVG Sbjct: 240 VNAQVTCIKREDPEKISGY-DMCELSIKSNAFLWHQIRCIMGILLLVG 286 >gi|332024452|gb|EGI64650.1| tRNA pseudouridine synthase 3 [Acromyrmex echinatior] Length = 443 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 53/231 (22%) Query: 15 YFGWQ------RQKNGSSIQ----GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 Y GW ++ N +I+ ++ K+ + + E H GRTD GV + QV Sbjct: 82 YLGWDYHGFAVQEDNTDTIEHHLFAALLKSCCIESRESSNYHRCGRTDKGVSSFSQVISL 141 Query: 65 DLVREWVP---------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 D+ P + CK LN L + I + V F ARF RSY Y Sbjct: 142 DVRSRLEPENQDNLSDELPYCKILNRLLPAN--IRCIAWCPVSSIFSARFDCKFRSYRY- 198 Query: 116 IITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI---RT 171 P+ +LD E M AA++++G HDF + A+ I RT Sbjct: 199 ----------------FFPRGNLDIEAMDKAAKYVIGDHDFRNICKMDV-ANGVINFKRT 241 Query: 172 IDHFDVNSFGN----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + VNS + + E+ + +++FL QIR +G L L+G K Sbjct: 242 VMDARVNSLNDQNVEKSTGYDMCELEITSQAFLWHQIRCLMGILLLIGQRK 292 >gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine synthase 3-like [Pongo abelii] Length = 481 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 98/246 (39%), Gaps = 64/246 (26%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVP--------VILCKALNAYLKISDT----------ISILNLSIVDKQF 101 QV DL R P + +A A +I T I IL + V+ F Sbjct: 126 QVISLDL-RSQFPRGKDSEDFNVKGEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRS 160 ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 185 SARFSCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCK 227 Query: 161 IHCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSL 205 + A+ I RTI V G L + V ++FL+ Q+R + L Sbjct: 228 MDV-ANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAIL 286 Query: 206 KLVGDG 211 L+G G Sbjct: 287 FLIGQG 292 >gi|169839443|ref|ZP_02872631.1| tRNA pseudouridine synthase A [candidate division TM7 single-cell isolate TM7a] Length = 68 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 2/61 (3%) Query: 6 MIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I +Y+GS + G+QRQK N ++QG IEK I + + + +GRTD GVHA+ QV++ Sbjct: 8 IIYQYDGSKFLGFQRQKDNNVKTVQGEIEKVILKTFSQNINMISSGRTDKGVHAMEQVSN 67 Query: 64 F 64 F Sbjct: 68 F 68 >gi|257053070|ref|YP_003130903.1| tRNA pseudouridine synthase A [Halorhabdus utahensis DSM 12940] gi|256691833|gb|ACV12170.1| tRNA pseudouridine synthase [Halorhabdus utahensis DSM 12940] Length = 275 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 34/252 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVV--HGAGRTDSGVH 56 R I Y+G + G+QRQ + +++ +I A+ L G+ V AGRTD+GV Sbjct: 6 RRAFRIAYDGRPFHGFQRQPDVATVSDAILDALRELDVLEDGDNVPPGYAAAGRTDAGVS 65 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL Q FD +W + ALN+ L + + V +FHA A+ R Y Y + Sbjct: 66 ALAQTVAFD-CPDW---LSPAALNSELPAD--VRAWASADVPAEFHATHDAVAREYTYHL 119 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A ++ RA +LD L G HDF F + +R + + Sbjct: 120 HAPDASVS----RAG---DALDA---------LAGEHDFHNFTP---DDTGTVRDL-TGE 159 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP- 235 S G+ + + + A F +R V + + G +E+ L + +AP Sbjct: 160 ARSEGDFLVVTLRADGFPRQFVRRAVTVIDALASGVAELDRIEQLLGDDPVEGPAGVAPA 219 Query: 236 -PEGLYFDSVEY 246 PE L +VEY Sbjct: 220 APEALVLTAVEY 231 >gi|226533212|ref|NP_001145731.1| hypothetical protein LOC100279238 [Zea mays] gi|219884209|gb|ACL52479.1| unknown [Zea mays] Length = 486 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 88/228 (38%), Gaps = 42/228 (18%) Query: 8 IEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHALRQV 61 + Y G ++G+ + N S I ++E+A +V + GRTD GV A QV Sbjct: 155 VMYFGQRFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSATGQV 214 Query: 62 AHF-----------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 D++ E + K LN L I +L V FHARF+ + R Sbjct: 215 ISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFTCLSR 272 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y Y KG LD M+ AA +G HDF F + S R Sbjct: 273 EYKY---------LFWKG-------DLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYR 316 Query: 171 ------TIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 TI D S + L + + +FL Q+R V L L+G G Sbjct: 317 RHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCMVAVLFLIGQG 364 >gi|126302589|sp|Q9BZE2|PUS3_HUMAN RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens] gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens] Length = 481 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 95/248 (38%), Gaps = 68/248 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVP--------------------VILCKALNAYLKISDTISILNLSIVDK 99 QV DL R P + LN L I IL + V+ Sbjct: 126 QVISLDL-RSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVL--PPDIRILAWAPVEP 182 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 183 SFSARFSCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNL 225 Query: 159 RSIHCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVG 203 + A+ I RTI V G L + V ++FL+ Q+R + Sbjct: 226 CKMDV-ANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMA 284 Query: 204 SLKLVGDG 211 L L+G G Sbjct: 285 ILFLIGQG 292 >gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens] Length = 481 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 95/248 (38%), Gaps = 68/248 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVP--------------------VILCKALNAYLKISDTISILNLSIVDK 99 QV DL R P + LN L I IL + V+ Sbjct: 126 QVISLDL-RSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVL--PPDIRILAWAPVEP 182 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 183 SFSARFSCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNL 225 Query: 159 RSIHCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVG 203 + A+ I RTI V G L + V ++FL+ Q+R + Sbjct: 226 CKMDV-ANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMA 284 Query: 204 SLKLVGDG 211 L L+G G Sbjct: 285 ILFLIGQG 292 >gi|199559785|ref|NP_112597.3| tRNA pseudouridine synthase 3 [Homo sapiens] Length = 481 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 95/248 (38%), Gaps = 68/248 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVP--------------------VILCKALNAYLKISDTISILNLSIVDK 99 QV DL R P + LN L I IL + V+ Sbjct: 126 QVISLDL-RSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVL--PPDIRILAWAPVEP 182 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 183 SFSARFSCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNL 225 Query: 159 RSIHCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVG 203 + A+ I RTI V G L + V ++FL+ Q+R + Sbjct: 226 CKMDV-ANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMA 284 Query: 204 SLKLVGDG 211 L L+G G Sbjct: 285 ILFLIGQG 292 >gi|194706182|gb|ACF87175.1| unknown [Zea mays] gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays] Length = 457 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 87/228 (38%), Gaps = 42/228 (18%) Query: 8 IEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHALRQV 61 + Y G ++G+ + N S I ++E+A +V + GRTD GV A QV Sbjct: 126 VMYFGQRFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSATGQV 185 Query: 62 AHF-----------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 D++ E + K LN L I +L V FHARF+ + R Sbjct: 186 ISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFTCLSR 243 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y Y W LD M+ AA +G HDF F + S R Sbjct: 244 EYKYLF--------------W--KGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYR 287 Query: 171 ------TIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 TI D S + L + + +FL Q+R V L L+G G Sbjct: 288 RHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCMVAVLFLIGQG 335 >gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens] gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct] gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct] gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct] gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct] Length = 481 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 95/248 (38%), Gaps = 68/248 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVP--------------------VILCKALNAYLKISDTISILNLSIVDK 99 QV DL R P + LN L I IL + V+ Sbjct: 126 QVISLDL-RSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVL--PPDIRILAWAPVEP 182 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 183 SFSARFSCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNL 225 Query: 159 RSIHCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVG 203 + A+ I RTI V G L + V ++FL+ Q+R + Sbjct: 226 CKMDV-ANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMA 284 Query: 204 SLKLVGDG 211 L L+G G Sbjct: 285 ILFLIGQG 292 >gi|291227559|ref|XP_002733751.1| PREDICTED: PseudoUridine Synthase family member (pus-1)-like [Saccoglossus kowalevskii] Length = 320 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 57/273 (20%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + +++ Y+G GY G QR K +I+G + KAI + G + H RTD Sbjct: 57 KVVLLLSYSGKGYMGMQRNKGVETIEGDLIKAI-VTAGAVPQSHADIPQKMQFQRCARTD 115 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISD----TISILNLSIVDKQFHARFSAI 108 GV A+RQV ++ NA +I++ +I ++ F+A+ + Sbjct: 116 KGVSAVRQVVSLKMML---------VDNAVEQINNSLPPSIRVITYKRTTGGFNAKNTCS 166 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDC-ENMRIA------AQHLV----GRHDFTT 157 R+Y Y + T AL S +C EN R+ AQ L+ G H+F Sbjct: 167 HRTYSYLMPT----FAL----------SSNCNENYRVTDEVHQKAQDLLNCYKGTHNFHN 212 Query: 158 FRSIHC-QASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 F S S +R + +V+ + I ++ +SF+ QIR +G + + G Sbjct: 213 FTSGKAFTEQSAMRFMRELNVSQAFVRCGLEFVVITIIGQSFMIHQIRKMIGLVIAIIRG 272 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + L+K +A K P AP GL ++V Sbjct: 273 VAPKSTLDKCWEAG--KMDIPKAPSLGLMLENV 303 >gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena thermophila] gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena thermophila SB210] Length = 481 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 90/227 (39%), Gaps = 49/227 (21%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDSGV 55 Y + + Y G Y G Q+ ++E+ +F + ++ +GRTD GV Sbjct: 114 YALKMSYVGINYQGLAYQQ---ETDNTVEEQLFKALEKTTLIKNRDNCNFTRSGRTDKGV 170 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKIS--DTISILNLSIVDKQFHARFSAIRRSYL 113 AL QV + + L ++ I D I IL S VD F+ARF +R Y Sbjct: 171 SALGQV---------IGITLRTSIKIGENIDEIDDIRILGCSKVDPAFNARFDCQKRIYK 221 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTI 172 Y + +D + M+ AA +G HDF F I Q + +R I Sbjct: 222 Y----------------YFFENQMDIQRMKEAANLFLGEHDFRNFCKIDVLQTLNYVRII 265 Query: 173 DHFDVN----SFGNLIE------IRVVARSFLHTQIRSFVGSLKLVG 209 D+ +FG L + +FL QIR+ + L LVG Sbjct: 266 YQLDIEEVQANFGTLDPRSKLYVATIQGSAFLWHQIRNMMAILFLVG 312 >gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8] gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8] Length = 296 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 93/237 (39%), Gaps = 58/237 (24%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVVVHGA---------GR 50 +++C Y G Y G QK+ + + ++E +F LV +V G GR Sbjct: 50 LKFC----YGGWDYGGLAIQKDRTPLP-TVEGKLFGALVRARLVDPKGGLEGCGWERCGR 104 Query: 51 TDSGVHALRQVAHFDLVR------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 TD GV A QV VR E +P +N +L D I IL S VD F +R Sbjct: 105 TDRGVSAAGQVISL-WVRSALSQEELLPHPFTYMINRHL--PDPIKILAWSPVDLSFSSR 161 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 +S R Y Y + P LD MR A +L G H+F I Sbjct: 162 YSCTWRHYKY----------------FFPPVGLDIPAMRAACAYLPGTHEFRNLCKI--- 202 Query: 165 ASSPIRTID------------HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 P + +D H D ++ G + + SFL+ +R+ +G L +G Sbjct: 203 --DPTKQLDQFRRDILHASISHVDASNPGGMHVFDLKGSSFLYHMVRNIMGVLLSIG 257 >gi|126327379|ref|XP_001371991.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 575 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 101/249 (40%), Gaps = 68/249 (27%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHA 57 + I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 70 LKIAYLGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSA 126 Query: 58 LRQVAHFDLVREWVP--------------------VILCKALNAYLKISDTISILNLSIV 97 QV +L R +P + LN L I +L + V Sbjct: 127 FGQVISLNL-RSQLPRDKDPEDKNLKDTVNDSVEEICYTHILNRVL--PPDIRVLAWATV 183 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 + F ARFS + R+Y Y P A +LD E M AAQ VG HDF Sbjct: 184 ESSFSARFSCLERTYRYFF-----PCA-----------NLDIEAMNDAAQKYVGTHDFRN 227 Query: 158 FRSIHCQASSPI---RTIDHFDVN--SFGN------------LIEIRVVARSFLHTQIRS 200 + A+ I RTI V +FG+ L + V+ ++FL+ Q+R Sbjct: 228 LCKMDV-ANGVINFQRTILSAKVQLVAFGSPEEKLQQQESFQLCQFEVIGQAFLYHQVRC 286 Query: 201 FVGSLKLVG 209 + L L+G Sbjct: 287 MMAILFLIG 295 >gi|91217701|ref|ZP_01254658.1| tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] gi|91184205|gb|EAS70591.1| tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] Length = 261 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/262 (23%), Positives = 109/262 (41%), Gaps = 33/262 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G Y GWQ+Q + +++ + K + F++ + V AGRTD+ V A + Sbjct: 8 YLIQLQYLGFRYHGWQKQPDVLTVEHMLHKTLNFILENQRFKVLAAGRTDAMVSANQTYI 67 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 + + + + + N + I L++ F+ + Y Y ++ Sbjct: 68 ELFIYEDELDLETFLEQFNK--NLPQDIRALSIEETTADFNIIQHPKIKEYFYFFCVKEK 125 Query: 121 -----APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT--TFRS----------IHC 163 AP + + + LD E M++ A+ G HDF TFR C Sbjct: 126 MHPFCAPFMVN------LQEDLDIELMKLGAKLFEGEHDFYSFTFRPNPETKTEGNIERC 179 Query: 164 Q-ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + I T + F SF ++VV F QIR +G+L +G K + +LEK + Sbjct: 180 ELTENDIYTANFFPNQSFV----LKVVGEGFKRQQIRLMMGALIDLGRHKISLEELEKTI 235 Query: 223 QAQDRKECGPLAPPEGLYFDSV 244 + + +A GL + V Sbjct: 236 DGSHKIKLEHIAQASGLILNKV 257 >gi|154335976|ref|XP_001564224.1| tRNA pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061258|emb|CAM38282.1| tRNA pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 525 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 30/188 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQR------QKNGSSIQGS-------------------IEKAI 35 + RY + ++Y GS + GW + +K ++ G+ +E+A+ Sbjct: 130 LTRYRVDVQYQGSDFDGWYKSVQRTNKKRDAAPAGNTTAGVADYGAGSHHFARVVLEEAL 189 Query: 36 FLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE--WVPVILCKALNAYL-KISDTISI 91 + +V V A ++GV R H D+ E P + + +L + ++I Sbjct: 190 AVALDVPMVGVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRSTLWLHQRRQPLAI 249 Query: 92 LNLSIVDKQ-FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 L+ Q FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ + Sbjct: 250 LSCHPCHNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLME 309 Query: 151 GRHDFTTF 158 G HD+ F Sbjct: 310 GTHDYGFF 317 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 7/85 (8%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA---- 224 +RT+D +V + + I V +SFL QIR+ VG LK G G W +L+ ALQ+ Sbjct: 415 VRTVDKIEVVRQEDEVLIWFVGQSFLRHQIRNMVGVLKAGGHGLWDDQELQHALQSGFEV 474 Query: 225 ---QDRKECGPLAPPEGLYFDSVEY 246 + ++E P AP GL VEY Sbjct: 475 SRKKFKRERLPPAPVHGLTLWDVEY 499 >gi|126459314|ref|YP_001055592.1| tRNA pseudouridine synthase ACD [Pyrobaculum calidifontis JCM 11548] gi|166228753|sp|A3MU09|TRUA_PYRCJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126249035|gb|ABO08126.1| Pseudouridylate synthase [Pyrobaculum calidifontis JCM 11548] Length = 257 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHT 196 D E MR A+ G HDF++F + + P+ T+D V G L+ + V + F + Sbjct: 104 DVEAMREVAELFKGTHDFSSFIQFRGERGTPPVTTVDEVGVEVAGRLVYLYFVGKGFRNK 163 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 QIR ++ G G + +E+ L+ + R P AP EGL +EY Sbjct: 164 QIRKMAWAILAAGRGVVSRRYVEELLE-RPRPGAVPSAPAEGLILLDIEYD 213 >gi|224118612|ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|222873619|gb|EEF10750.1| predicted protein [Populus trichocarpa] Length = 428 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 16/127 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---------IVVVHG----A 48 + + +++ Y+G + GWQ+Q +++QG +EK++ E + G A Sbjct: 105 VTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVA 164 Query: 49 GRTDSGVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL+QV F R+ V P + A+N + + ++S V + FH FSA Sbjct: 165 GRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDV--APGKVRVESISEVSRAFHPNFSA 222 Query: 108 IRRSYLY 114 R YLY Sbjct: 223 KWRRYLY 229 >gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine synthase 3 [Nomascus leucogenys] Length = 481 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 95/245 (38%), Gaps = 62/245 (25%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVPVILCKALNAYLK-----------------ISDTISILNLSIVDKQFH 102 QV DL ++ + N + + I IL + V+ F Sbjct: 126 QVISLDLRSQFPRGRESEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 185 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y P++ LD M AAQ VG HDF + Sbjct: 186 ARFSCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 HCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLK 206 A+ + RTI V G L + V ++FL+ Q+R + L Sbjct: 229 DV-ANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILF 287 Query: 207 LVGDG 211 L+G G Sbjct: 288 LIGQG 292 >gi|321468438|gb|EFX79423.1| hypothetical protein DAPPUDRAFT_319620 [Daphnia pulex] Length = 424 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 84/202 (41%), Gaps = 46/202 (22%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---------SSIQGSIEKAI--FL-----VTGEIVV 44 M RY + Y+G+ + G QRQ +SIQ +EK I FL T Sbjct: 1 MQRYLIKFSYSGTRFRGLQRQPGEIYNDEIPYRASIQTILEKGILRFLQHKKSATSFEPG 60 Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 V + RTD GVH+ +AH DL L K +N N+ V FHAR Sbjct: 61 VQFSSRTDQGVHSFCNLAHVDLE-------LLKNVN------------NVEAVPSTFHAR 101 Query: 105 FSAIRRSYLYRI-ITRQ---APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 +S+ R YLYRI +T Q +E + + I K + + G DF +F Sbjct: 102 YSSYSRHYLYRIGVTPQDVKCHPVIEWRKCYFIEKPFCLDKAIEVCKLFEGTKDFASF-- 159 Query: 161 IHCQASSP-----IRTIDHFDV 177 H + P +RTID F + Sbjct: 160 CHGISGRPPGYPTVRTIDAFHI 181 >gi|194389944|dbj|BAG60488.1| unnamed protein product [Homo sapiens] Length = 142 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 21/123 (17%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----------------FGNLIE 185 M+ AAQHL+G HDF+ F+S SP+RT+ V+ F NL Sbjct: 4 MQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNL-- 61 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDS 243 ++SFL+ Q+R L VG G ++ L++QD K +AP GL+ S Sbjct: 62 -EFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKS 120 Query: 244 VEY 246 V Y Sbjct: 121 VLY 123 >gi|71416935|ref|XP_810423.1| tRNA pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70874950|gb|EAN88572.1| tRNA pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 608 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 54 GVHALRQVAHFDLVR--EWVPVILCKALNAYL-KISDTISILNLSIVDKQ-FHARFSAIR 109 GV R HFD+ E P + + +L K +++L+ Q FHAR S +R Sbjct: 297 GVSVRRLCCHFDVPSHIELQPRTIIQRATMWLEKRQQPLAVLSCQRCKNQDFHARHSGLR 356 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 R Y+YRI+ R AP + G W + + LD M+ A+ L G DF F Sbjct: 357 RVYVYRILNRVAPPLFDAGLQWHVDRHLDVPRMQRFAKALEGTKDFGYF 405 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 7/85 (8%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA---- 224 IRTID +V + + I V +SFL QIR+ V LK G G W +L++ALQ+ Sbjct: 498 IRTIDRLEVVRQDDEVLIWFVGKSFLRHQIRNMVSLLKAAGHGLWNELELQQALQSGFEP 557 Query: 225 ---QDRKECGPLAPPEGLYFDSVEY 246 + ++E P AP GL VEY Sbjct: 558 SRRRFKRERFPPAPVYGLTLWDVEY 582 >gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine synthase 3 [Pan troglodytes] Length = 481 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 95/248 (38%), Gaps = 68/248 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N ++ +IE+ +F + +V H GRTD GV A Sbjct: 69 IAYMGWGYQGFASQENTNN---TIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFG 125 Query: 60 QVAHFDLVREWVP--------------------VILCKALNAYLKISDTISILNLSIVDK 99 QV DL R P + LN L I IL + V+ Sbjct: 126 QVISLDL-RSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVL--PPDIRILAWAPVEP 182 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y P++ LD M AAQ VG HDF Sbjct: 183 SFSARFSCLERTYRY-----------------FFPRADLDIVTMDYAAQKYVGTHDFRNL 225 Query: 159 RSIHCQASSPI---RTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVG 203 + A+ I RTI V G L + V ++FL+ Q+R + Sbjct: 226 CKMDV-ANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMA 284 Query: 204 SLKLVGDG 211 L L+G G Sbjct: 285 ILFLIGQG 292 >gi|10640247|emb|CAC12061.1| tRNA-pseudouridine synthase I related protein [Thermoplasma acidophilum] Length = 257 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 25/203 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y Y GS + G+QR S++ +I + +G + A RTD V AL Sbjct: 6 MTNYAFKFGYEGSYFTGFQRGNGDHSVEDTIIDTL-KASGFDYAIKAAARTDRYVSALSN 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L P + +N+ + D I + + + V F+ R + +Y Y Sbjct: 65 V--FSLETGRSPEAVAGLINSRI---DHIYVHSYAEVPDDFNPRHCTFK-TYRY------ 112 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +++ + LDC ++ I +G HDF F + + + +RTI + + Sbjct: 113 ----------YILRQDLDCISLDINLGKFIGTHDFRRF--VRADSRNTVRTIINASCKND 160 Query: 181 GNLIEIRVVARSFLHTQIRSFVG 203 L+ + ARSFL QIR+ V Sbjct: 161 NGLLYLEFSARSFLWNQIRTMVA 183 >gi|167948001|ref|ZP_02535075.1| tRNA pseudouridine synthase A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 67 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 38/64 (59%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I I V A +FLH +R+ G L +G GK + E+ LQ +DR++ G APP GLY Sbjct: 1 MIAIEVHANAFLHHMVRNLAGVLMAIGQGKQEVSWAEEILQLRDRRKGGVTAPPHGLYLT 60 Query: 243 SVEY 246 V+Y Sbjct: 61 KVDY 64 >gi|16082568|ref|NP_394390.1| tRNA pseudouridine synthase A [Thermoplasma acidophilum DSM 1728] gi|24212586|sp|Q9HJN5|TRUA_THEAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 252 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 25/203 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y Y GS + G+QR S++ +I + +G + A RTD V AL Sbjct: 1 MTNYAFKFGYEGSYFTGFQRGNGDHSVEDTIIDTL-KASGFDYAIKAAARTDRYVSALSN 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L P + +N+ + D I + + + V F+ R + +Y Y Sbjct: 60 V--FSLETGRSPEAVAGLINSRI---DHIYVHSYAEVPDDFNPRHCTFK-TYRY------ 107 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +++ + LDC ++ I +G HDF F + + + +RTI + + Sbjct: 108 ----------YILRQDLDCISLDINLGKFIGTHDFRRF--VRADSRNTVRTIINASCKND 155 Query: 181 GNLIEIRVVARSFLHTQIRSFVG 203 L+ + ARSFL QIR+ V Sbjct: 156 NGLLYLEFSARSFLWNQIRTMVA 178 >gi|324517253|gb|ADY46767.1| tRNA pseudouridine synthase-like protein 1 [Ascaris suum] Length = 315 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 116/289 (40%), Gaps = 47/289 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQG---SIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 RY + I Y+GS + + +G + +I ++ F GE + A RTD GVHALR Sbjct: 6 RYLLWISYDGSRFPEMAKGGSGYGVLDFLTTILRSSFPNVGERLKSSAASRTDRGVHALR 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTIS---------ILNLSIVDKQFHARFSAIRR 110 + E+ IL + + L ++I+ IL+ V F AR + R Sbjct: 66 NAIIIQVPLEY--GILDQRKDTLLAEWNSIAEQCKPKALQILDFHTVSPGFSARRNVSYR 123 Query: 111 SYLYRIIT----------RQAPLAL---EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 Y YR+ ++ P + E+ AW++P D + A G H+ + Sbjct: 124 CYKYRVCVALTSDAWQRFKEKPSLMHYAERDYAWILPPGFDLYKAQQACSIFKGTHNMAS 183 Query: 158 F-------RSIHCQASSPIRTIDHFDV---------NSFGNLIEIRVVARSFLHTQIRSF 201 F R + S IR + H + ++ + +++ SFL Q+R Sbjct: 184 FFKHRERDRRKENEYPSAIRHMRHVAITGGEPRCIDDADHAFYDFSIISTSFLREQVRRM 243 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGP----LAPPEGLYFDSVEY 246 +G + G+ + +E L+ +AP +GL+ ++V Y Sbjct: 244 IGIIVAHAYGRVSRELIEWLLKNPHPTNFFTRRLLIAPAQGLFLENVVY 292 >gi|224083654|ref|XP_002193509.1| PREDICTED: similar to Pseudouridylate synthase 3 [Taeniopygia guttata] Length = 462 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 95/261 (36%), Gaps = 71/261 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N + +IE+ +F + +V H GRTD GV A Sbjct: 72 IAYLGWGYQGFASQENTPN---TIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVSAFG 128 Query: 60 QVAHFDLVREWVPVILCKALNAYLK----------------ISDTISILNLSIVDKQFHA 103 QV DL R +P + LN + + I +L + V +F A Sbjct: 129 QVISLDL-RSSLPE--GQQLNGHGGEGQQEELRYTHILNRVLPPDIRVLAWAPVGPEFSA 185 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----- 158 RFS + R+Y Y Q LD M AAQ VG HDF Sbjct: 186 RFSCLSRTYRYFFPCAQ----------------LDVALMDTAAQRYVGTHDFRNLCKMDV 229 Query: 159 --------------RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 R R D F L + V ++FL+ Q+R + Sbjct: 230 ANGVLNFQRTILRARVTRVSGGGEARPRDPF------QLCQFEVTGQAFLYHQVRCMMAV 283 Query: 205 LKLVGDGKWTSTDLEKALQAQ 225 L L+G G + +++ L + Sbjct: 284 LFLIGQGMESPDVIDELLNVE 304 >gi|149580877|ref|XP_001519338.1| PREDICTED: similar to FKSG32 [Ornithorhynchus anatinus] Length = 695 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 64/245 (26%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHA 57 + I Y G GY G+ Q+N ++ +IE+ +F + ++ H GRTD GV A Sbjct: 65 LRIAYLGWGYQGFASQENTNN---TIEERLFEALTKTRLIERRQTANYHRCGRTDKGVSA 121 Query: 58 LRQVAHFDLVREWV--------PVILCKALNAYLK--------ISDTISILNLSIVDKQF 101 QV DL + V A A ++ + I +L + V F Sbjct: 122 FGQVISLDLRSQTVRGGQEEEGSKDRMDARTAEIRYTHILNRVLPPDIRVLAWAPVGSGF 181 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDF----- 155 ARF+ ++R+Y Y P++ LD E M AAQ VG HDF Sbjct: 182 SARFNCLQRTYRY-----------------FFPRADLDLEAMDRAAQKYVGTHDFRNLCK 224 Query: 156 -------TTF-RSIHCQASSPIRTIDH---FDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 T+F R+I S+ +R +D D L + V ++FL+ Q+R + Sbjct: 225 MDVANGVTSFQRTI---LSAQVRRVDQSEETDRRDPFRLCQFEVTGQAFLYHQVRCMMAI 281 Query: 205 LKLVG 209 L LVG Sbjct: 282 LFLVG 286 >gi|157106978|ref|XP_001649570.1| pseudouridylate synthase [Aedes aegypti] gi|108879706|gb|EAT43931.1| pseudouridylate synthase [Aedes aegypti] Length = 467 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 52/251 (20%) Query: 15 YFGWQRQKNGSSIQG--SIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVAHF 64 Y GW Q S +IE +F + ++ H GRTD GV A QV Sbjct: 82 YLGWDYQGYASQEDSARTIEHLLFNALTRVCLIENRETSNYHRCGRTDKGVSAFHQVVSL 141 Query: 65 DLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 D+ ++ P + C+ LN L D + + +V+ + ARF R+Y Sbjct: 142 DVRSKFAPENQLEPESIANEINYCQLLNRVLP-QDIRCVAWMPMVNPNYSARFDCRSRTY 200 Query: 113 LYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPI 169 Y P+ SL+ + M+ A LVG HDF + + Sbjct: 201 RY-----------------FFPRGSLNIDAMKEACTFLVGAHDFRNLCKMDVGNGVVTFT 243 Query: 170 RTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R I + + S +++ + + ++FL Q+R + L LVG+GK + +++ Sbjct: 244 RRISYVSIEDSQSDAKESPYDMLYLELRGKAFLWHQVRCIMAVLFLVGEGKEEPSVVKEL 303 Query: 222 LQAQDRKECGP 232 L ++ C P Sbjct: 304 LDV-NKNPCKP 313 >gi|255087382|ref|XP_002505614.1| predicted protein [Micromonas sp. RCC299] gi|226520884|gb|ACO66872.1| predicted protein [Micromonas sp. RCC299] Length = 294 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 108/262 (41%), Gaps = 30/262 (11%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVHA 57 + Y G GY G+QR +I+ +E+AI G G A RTD GV A Sbjct: 10 FLAYVGKGYQGFQRNPGARTIEDELERAIVAAGGISADNAGDFTKVQWTRAARTDKGVSA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + Q +V + P + + +NA L + I V F+A+ RR Y Y I Sbjct: 70 VGQCIALRMVLD--PPGVLERINAAL--PEGFKIFGYKRVTGGFNAKTMCDRRRYEYVIP 125 Query: 118 T------RQAPLALE--KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSP 168 T R P + + +A++ + L +I + G H+F + + ++ Sbjct: 126 TCAFDPRRCLPRREDDKEAKAFVFDEELRARVNKILGNY-CGTHNFHNYTVRVDPNDAAA 184 Query: 169 IRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R I F+ V + VV +SF+ QIR +G++ V G D AL+ Sbjct: 185 MRYIISFECGEPFVIDGVEFVRTTVVGQSFMLHQIRKLIGTMLCVVRGYLAEEDQIFALK 244 Query: 224 AQDRKECGPLAPPEGLYFDSVE 245 ++ PLA E Y D VE Sbjct: 245 TKESCSHEPLALDE--YADDVE 264 >gi|46205610|ref|ZP_00209946.1| COG0101: Pseudouridylate synthase [Magnetospirillum magnetotacticum MS-1] Length = 193 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 17/158 (10%) Query: 101 FHARFSAIRRSYLYRIITRQA---PLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDF 155 F ARFSA+ R+Y YR+ A PL E W++ + LD M A + L+G DF Sbjct: 11 FDARFSALHRAYTYRVADDPAQRDPLRRE----WVLWNRRPLDVAAMDAAVRPLLGVRDF 66 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGD 210 +F A++ IR + H + + L+ V A +F H +R+ VG+ VG+ Sbjct: 67 ASFCKPRPGATT-IRELQHLSWSRPADGPDAGLVVAHVRADAFCHNMVRALVGASLAVGE 125 Query: 211 GKWTSTDLEKALQAQDRKECGP-LAPPEGLYFDSVEYS 247 G+ L A R++ G + P GL + V Y Sbjct: 126 GR-RDVGWPAELLASRRRDAGAGVVPAHGLVLEEVTYP 162 >gi|312374395|gb|EFR21957.1| hypothetical protein AND_15974 [Anopheles darlingi] Length = 163 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 14/135 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIF-LVTGEIVVVHGAGRT 51 M RY + + Y G+ + G QR+ K+ ++QG IE+A+ L + + RT Sbjct: 1 MNRYLINLSYIGTRFRGIQRKIDKAAGQFKDPHTVQGVIEEALLRLRPVNEPTLKLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALN-AYLKISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + + + +N A + + I++ V FHAR S Sbjct: 61 DTGVHALHNTVHVDLQRPNGKPYDEDRITQTINRACERDGHALRIISTIRVPDTFHARLS 120 Query: 107 AIRRSYLYRIITRQA 121 A R+YLYR+ +A Sbjct: 121 AKSRTYLYRLAVLKA 135 >gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8] gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8] Length = 455 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 93/242 (38%), Gaps = 61/242 (25%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVVVHGA---------GR 50 +++C Y G + G QK+ + + ++E +F LV +V G GR Sbjct: 83 LKFC----YGGWDFGGLAIQKDRTPLP-TVEGKLFGALVRARLVDPKGGLEGCGWERCGR 137 Query: 51 TDSGVHALRQVAHFDLVR------EWVPVILCKALNAYL-----KISDTISILNLSIVDK 99 TD GV A QV VR E P + ++ + DTI IL S VD Sbjct: 138 TDRGVSAAGQVISL-WVRSALSQEELTPTATPTEEHPFIYMINRHLPDTIKILAWSPVDP 196 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F +R+S R Y Y + P LD MR A +L G HDF Sbjct: 197 SFSSRYSCTWRHYKY----------------FFSPVGLDVAAMRAACAYLPGTHDFRNLC 240 Query: 160 SIHCQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 I P + +D F D ++ G + + SFL+ +R+ +G L Sbjct: 241 KI-----DPTKQLDQFRRDILHASISPVDASNPGGMHVFDLKGSSFLYHMVRNIMGVLLS 295 Query: 208 VG 209 +G Sbjct: 296 IG 297 >gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor] gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor] Length = 459 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 87/228 (38%), Gaps = 42/228 (18%) Query: 8 IEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHALRQV 61 + Y G ++G+ + N S I ++E+A +V + GRTD GV A QV Sbjct: 128 VMYFGQRFYGFSSEGNTEPTVESEIFKALERAKLMVGSRKESCYSRCGRTDKGVSATGQV 187 Query: 62 AHF-----------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 D++ E + K LN L I +L V FHARF+ + R Sbjct: 188 ISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFTCLSR 245 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y Y W LD M+ AA +G HDF F + S R Sbjct: 246 EYKYLF--------------W--KGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYR 289 Query: 171 ------TIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 TI D S + L + + +FL Q+R V L L+G G Sbjct: 290 RRITEFTISACDRRSNNDELCSMMIKGSAFLWHQVRCMVAVLFLIGQG 337 >gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus] gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus] gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus] Length = 479 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 94/246 (38%), Gaps = 64/246 (26%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVV------VHGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F L+ +V H GRTD GV A Sbjct: 68 IAYLGWGYQGFASQENTSN---TIEEKLFEALIKTRLVESRQTSNYHRCGRTDKGVSAFG 124 Query: 60 QVAHFDLVREWVP--------------------VILCKALNAYLKISDTISILNLSIVDK 99 QV DL R P + LN L I +L + + Sbjct: 125 QVISLDL-RSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPAD--IRVLAWAPAEP 181 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R+Y Y P A LD M AAQ VG HDF Sbjct: 182 SFSARFSCLERTYRYFF-----PCA-----------DLDIATMNYAAQKYVGTHDFRNLC 225 Query: 160 SIHCQ--ASSPIRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSL 205 + ++ RTI V + L + V+ ++FL+ Q+R + L Sbjct: 226 KMDVANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCMMAIL 285 Query: 206 KLVGDG 211 L+G G Sbjct: 286 FLIGQG 291 >gi|325190406|emb|CCA24877.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14] Length = 463 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 120/298 (40%), Gaps = 60/298 (20%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 RY + Y G Y G Q + ++I+ +E+A+F G +G A RTD Sbjct: 73 RYGFWVAYCGEKYSGMQLNEGVATIEAELERALFQAGGISDANYGFLQKIGWSRAARTDK 132 Query: 54 GVHALRQV----------AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 GVHA Q+ + D E + + K +NA L SD I ++++ V K F+A Sbjct: 133 GVHAAGQLVTAKLSFDSKSSEDRNGEQIKGFIEK-INASLP-SD-IRVMDMVTVTKNFNA 189 Query: 104 RFSAIRRSYLYRIIT----------RQAPLALEKGRAWLIPKSLDC-------ENMRIAA 146 + S R+Y Y I T + P+ + + ++PK+ D + R++ Sbjct: 190 KLSCDYRTYEYLIPTFVFAGRQRKDHKDPVKVTQAEE-IVPKTTDLHLDVNHQQAYRMST 248 Query: 147 QH----------LVGRHDFTTFRSIHCQASSPI-RTIDHFDV-------NSFGNLIEIRV 188 + G H F F S S R I F NS I +RV Sbjct: 249 EQYDDLNRILAKFEGSHTFHNFTSKLLPTSPKCQRYIVSFKADQPFVPSNSAFEWIRLRV 308 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +SFL QIR +G+ + G S +E+ + D+ + P AP GLY + Sbjct: 309 KGQSFLLHQIRKMIGTAVDLCAGAAESNVIERVM-LLDKMDL-PKAPSVGLYLSEAHF 364 >gi|313223491|emb|CBY41917.1| unnamed protein product [Oikopleura dioica] Length = 281 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 13/168 (7%) Query: 85 ISDTISI-LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 +++ IS+ +N + + + + + R+++ II RQ P W I LD E M+ Sbjct: 33 VNNVISLFVNSRLSEDEINENVTVGERNFV-AIINRQLP-----DDIW-ITSGLDVELMK 85 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI---RVVARSFLHTQIRS 200 AA +L+G HDF F + + +R D+ N+ + + A FL+ QIR Sbjct: 86 EAASYLIGEHDFRNFSQAQLERQNTVRVCFAADIKQVPNMSSMCVFSIKASGFLYHQIRL 145 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 + L LVG+ ST +++ L + R+ A P+GL EY Sbjct: 146 TMAILALVGNKLEKSTIVKELLDVEKYPRRPSYKYANPDGLVLIDCEY 193 >gi|301091109|ref|XP_002895746.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4] gi|262096658|gb|EEY54710.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4] Length = 470 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 119/296 (40%), Gaps = 64/296 (21%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 RY + + + G Y G Q + +I+ +E+A+F G +G A RTD Sbjct: 72 RYGLWVAFCGKNYCGMQMNEGVKTIEAELERALFEAGGIAESNYGYLQKIGWSRAARTDK 131 Query: 54 GVHALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA Q+ L V + + + K A + + I ++++ V K F+A+ + +R+Y Sbjct: 132 GVHAAGQLLTAKLHVGDDIAGFMAKVDAA---LPEDIRVMHMVTVTKNFNAKMTCDQRTY 188 Query: 113 LYRIIT----------------RQAP------------------------LALEKGRAWL 132 Y T +QA LE +A+ Sbjct: 189 EYLAPTFIFGKRMRSSASKNEEKQAEGTNQWPSNLRDSEEGFDSNVVIDNTTLEAHKAFR 248 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI--RTIDHFD-----VNSFGNLIE 185 + + E + + VG H+F F S + ++P R I F+ V + + Sbjct: 249 LSDEI-LEQLNATLKQYVGTHNFHNFTS-KMEPTNPQANRFIISFEAERPFVQNDMEWVR 306 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +RVV +SFL IR +G+ V G + +E+A++ K P AP GLY Sbjct: 307 LRVVGQSFLLHHIRKMIGTAVEVVSGVSDPSTIERAMELT--KMDLPKAPSVGLYL 360 >gi|158298322|ref|XP_318500.4| AGAP010807-PA [Anopheles gambiae str. PEST] gi|157014345|gb|EAA13705.4| AGAP010807-PA [Anopheles gambiae str. PEST] Length = 485 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 58/255 (22%) Query: 15 YFGWQRQ---KNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDSGVHALRQVAH 63 Y GW Q SI+ +IE +F ++ ++ GRTD GV A QV Sbjct: 82 YLGWDYQGFAAQEDSIE-TIEHHMFAALKKVCLIESRETSNYNRCGRTDKGVSAFHQVIS 140 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILN------------LSIVDKQFHARFSAIRRS 111 D+ ++ P + A N ++ D ++LN + +V+ + ARF R+ Sbjct: 141 LDVRSKFAPELQLDANNLTNEL-DYCAMLNRVLPEEIRCLAWMPMVNPAYSARFDCRSRT 199 Query: 112 YLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF------------ 158 Y Y P+ L+ M +A++LVG HDF Sbjct: 200 YRY-----------------FFPRGDLNITAMEESARYLVGAHDFRNLCKMDVGNGVVSF 242 Query: 159 -RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 RSI + P + D +S+ +++ + + ++FL Q+R + L LVG G+ + Sbjct: 243 VRSIDAISIKPSQRDSERDGSSY-DMMYLELQGKAFLWHQVRCIMAVLLLVGQGREKPSV 301 Query: 218 LEKALQAQDRKECGP 232 ++ L + + C P Sbjct: 302 VKDLLDVE-QNPCKP 315 >gi|88802196|ref|ZP_01117723.1| pseudouridylate synthase I [Polaribacter irgensii 23-P] gi|88781054|gb|EAR12232.1| pseudouridylate synthase I [Polaribacter irgensii 23-P] Length = 260 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 33/263 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + +E+ G + GWQ+Q N ++ ++K++ F+ G GRTD+ V A Sbjct: 7 YLIRLEFLGFRFSGWQKQLNAKTVHDIVDKSLSFVFEDSAYKTIGVGRTDAKVSA--NAY 64 Query: 63 HFDLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII--T 118 +F L R E V +LN+ + + V ++ ++ R+ Y Y Sbjct: 65 YFQLFRDSEIKEVSFLASLNS--NFPPDFRAITVQEVGTDYNVIQASKRKEYHYYFSFGA 122 Query: 119 RQAPLALEKGRAWL--IPKSLDCENMRIAAQHLVGRHDF----------TTFRSI--HCQ 164 + P A +L + LD + M AA+ G H F T F+ + C+ Sbjct: 123 KNHPFA----APFLVNVAADLDLKKMMDAARLFEGEHYFHKYCTKPSAQTVFKRVIDVCE 178 Query: 165 -ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + I T F S+ +RV + FL QIR + +L VG G +T + +L+ Sbjct: 179 IVENTILTASFFPEKSY----MLRVQGKGFLRYQIRLMMATLFEVGKGTLDATFIIASLK 234 Query: 224 A-QDRKECGPLAPPEGLYFDSVE 245 DRK +AP GL +E Sbjct: 235 EDNDRKFMRNIAPSSGLQLYDIE 257 >gi|163783824|ref|ZP_02178806.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] gi|159880914|gb|EDP74436.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] Length = 64 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + I Y G+ Y GWQRQ +IQ IE + ++ V ++ +GRTD+GVHAL QVA+ Sbjct: 5 YKLTISYLGTNYHGWQRQPKHITIQQVIEDNLKVLVKHPVKLYASGRTDAGVHALGQVAN 64 >gi|295133853|ref|YP_003584529.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] gi|294981868|gb|ADF52333.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] Length = 262 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 25/262 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + ++Y G GWQ+Q N +++G I K + V E V G RTD+ V + + Sbjct: 8 YLIKVQYLGYRLHGWQKQPNFKTVEGLITKTLRYVMPETRYKVLGCSRTDAMVSS--NGS 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVD-KQFHARFSAIRRS------YLYR 115 F+L + P+ + L +L + + ++ + D ++ A F+ I+ S YL+ Sbjct: 66 AFELFVDEQPL---ENLEDFLALFNLNLPQDIRVTDIEEVGANFNIIQHSKIKEYAYLFS 122 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--- 172 ++ P + LD + M+ AQ G H+F + + S+ R I Sbjct: 123 FGSKNHPFCAPFMANFQF--DLDIDKMKKGAQLFNGTHNFRNYCVRVSEKSTFEREILKA 180 Query: 173 -----DHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-QAQ 225 + N F I V + FL Q+R +G++ +G G+++ D+E++L + Sbjct: 181 EIVENKLYTANFFPKKSYIFHVHGKGFLRHQVRLMMGAMIQLGRGEFSLGDIEQSLKEGN 240 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 + + AP GL + + + Sbjct: 241 EHLQMDYSAPASGLILNDIHFD 262 >gi|307177137|gb|EFN66370.1| tRNA pseudouridine synthase 3 [Camponotus floridanus] Length = 345 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 89/230 (38%), Gaps = 52/230 (22%) Query: 15 YFGWQ------RQKNGSSIQ----GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 Y GW ++ N +I+ ++ K+ + + E H GRTD GV + QV Sbjct: 25 YLGWDYHGFTVQEDNNDTIEHHLFTALLKSCCIESRESANYHRCGRTDKGVSSFSQVISL 84 Query: 65 DLVREWVP---------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 D+ P + CK LN L + I + V F ARF R+Y Y Sbjct: 85 DIRSRLEPENQHNLSEELPYCKILNRLLPTN--IRCIAWCPVSPNFSARFDCKYRTYKY- 141 Query: 116 IITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDF------------TTFRSIH 162 PKS LD + M + ++ +G HDF F+ Sbjct: 142 ----------------FFPKSNLDIDAMDKSVKYAIGDHDFRNICKMDVANGVINFKRTV 185 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 A + + + + N+ E+ + +++FL QIR +G L LVG K Sbjct: 186 IDAKVSMSNQNVEKITGY-NMCELEITSQAFLWHQIRCLMGILLLVGQRK 234 >gi|71749392|ref|XP_828035.1| tRNA pseudouridine synthase A-like protein [Trypanosoma brucei TREU927] gi|70833419|gb|EAN78923.1| tRNA pseudouridine synthase A-like protein [Trypanosoma brucei] Length = 579 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 44/202 (21%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDS- 53 + RY + ++Y G+ + GW RQ + + GSI + G I G R ++ Sbjct: 175 LTRYRVDVQYQGNDFDGWWKSTTRQLFRREVGLDGSITRVPVAEPGTIGNAAGVSRGETM 234 Query: 54 ---------------------------------GVHALRQVAHFDLVR--EWVPVILCKA 78 GV R H D+ E P + + Sbjct: 235 GSRYHARTVLEEALAVALDVNTVRVVAGVIPEVGVSVRRLCCHVDVPSHIELQPRTVIQR 294 Query: 79 LNAYL-KISDTISILNLSIVDKQ-FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 ++ K ++IL+ Q FHAR S +RR Y+YRI+ R AP + G W + + Sbjct: 295 ATMWMEKRQQPLAILSYRRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAGLQWHVDRH 354 Query: 137 LDCENMRIAAQHLVGRHDFTTF 158 LD + M+ A+ L G DF F Sbjct: 355 LDVDRMKRFAKTLEGTKDFGYF 376 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 7/85 (8%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA---- 224 +RT+D DV + + I V RSFL QIR+ V LK G G W +L++ALQ+ Sbjct: 469 VRTVDRLDVVRQDDEVLIWFVGRSFLRHQIRNMVSVLKAAGHGLWNDLELQQALQSGFEP 528 Query: 225 ---QDRKECGPLAPPEGLYFDSVEY 246 + ++E P AP GL VEY Sbjct: 529 SRHRFKRERFPTAPAYGLTLWDVEY 553 >gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC 50983] gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC 50983] Length = 387 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 24/168 (14%) Query: 49 GRTDSGVHALRQVA--HFDLVREWVPVILCKALNAYLKISDTISILNL-SIVDKQFHARF 105 GRTD GVHA A L + + +N L D I +L + S+ F ARF Sbjct: 108 GRTDKGVHARGNYATLRLRLKPDGTEFPYIQMINRVL--PDDIRVLRICSVPSDDFDARF 165 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 S R+Y Y + LD E M AAQ LVG+HD+ F + + Sbjct: 166 SCKSRTYKY----------------FFPSTGLDLEVMAEAAQRLVGQHDYRNFCRMDVEQ 209 Query: 166 SSPI-RTIDHFDVNSFGNLIEIRVVARS-FLHTQIRSFVGSLKLVGDG 211 ++ RTI F++ + G++I V+ S FL Q+R + L L+G G Sbjct: 210 TTNFERTIYSFEICN-GDVISHAVITGSAFLWHQVRCMMEVLMLIGKG 256 >gi|193706844|ref|XP_001945291.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Acyrthosiphon pisum] Length = 441 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 25/257 (9%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGE------IVVVHGAGRTDSGVH 56 +++ Y+G GY G QR K +++ + K+ L+T E + A RTD GV Sbjct: 70 ILLAYSGLGYLGLQRNKGVKTVEEELLLALKSKNLITDEGFEQIQTMQFQRAARTDKGVS 129 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 ALRQ+ L + ++ AL + I +L++ V K F+++ S R+Y Y Sbjct: 130 ALRQIISLLLPEDVDKQVINTAL------PEQIRVLDIRRVTKGFNSKNSCDGRTYSYTC 183 Query: 117 ITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTID 173 T AP ++ I ++ + + + +G H++ + S S+ + Sbjct: 184 PTFAFAPAETTIDFSYRIDATV-IDRINEVVKSFLGCHNYHNYTSKKKPGDPSAQRYMVS 242 Query: 174 HFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + F LI + V +SF+ QIR VG + + G +E+A Q DR + Sbjct: 243 FYCDKPFEKDGVELISLYVRGQSFMLHQIRKMVGVIIAICRGVAKHDVIERAWQP-DRLD 301 Query: 230 CGPLAPPEGLYFDSVEY 246 P+AP GL + V Y Sbjct: 302 L-PIAPGLGLVLEEVHY 317 >gi|242096622|ref|XP_002438801.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor] gi|241917024|gb|EER90168.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor] Length = 318 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 93/227 (40%), Gaps = 30/227 (13%) Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFS 106 AGRTD GV AL+QV F R+ V K A+N D + L++S V ++FH FS Sbjct: 82 AGRTDKGVTALQQVCSFYTWRKDVKSGDIKDAINE--AAPDKLKPLHVSEVPREFHPNFS 139 Query: 107 AIRRSYLY--------RIITRQAPLA--LEKGRAWLIPKSLDCENMRIAAQHLVGR---- 152 A R Y+Y +I +A + LE + P+S D + + L G+ Sbjct: 140 AKWRRYMYIFPLDEDANLILGEAHSSKILENSEHNIKPQSFDVAKVDKILKTLAGKTLSY 199 Query: 153 ----HDFTTFRSI---------HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 D RS+ H +A+ + D ++ + +VA FL +R Sbjct: 200 KMFARDTQASRSVGPPTECFMFHSRAAVAKLHYANEDYKEGMMVMCVELVANRFLRKMVR 259 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V + L ++A DR+ P APPEGL V Y Sbjct: 260 VLVATAIREAAAGAGDDALLNLMEATDRRATAPPAPPEGLCLIDVGY 306 >gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia] Length = 414 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 107/276 (38%), Gaps = 56/276 (20%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDSG 54 R + Y G Y G ++Q N Q +IE +F + ++ AGRTD G Sbjct: 50 RVAFKLAYVGINYHGLEQQINQ---QNTIENHLFKALQRVRMIDNRDDCNYTRAGRTDKG 106 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKI-----SDTISILNLSIVDKQFHARFSAIR 109 V A+ V ++ + + K+ Y +I + I IL+ IVD++F+AR+ I+ Sbjct: 107 VSAIGNVVALNVRK------IGKSDKLYAQILNRVLPEDIQILDECIVDEKFNARYDCIK 160 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP- 168 R Y Y + + E M A +G HDF F + A+ Sbjct: 161 RVYKY----------------YFYKMDYNIELMTEAMLLFIGEHDFRNFCKLDVIANQNF 204 Query: 169 IRTIDHFDVNS------------FGNLIEIR-----VVARSFLHTQIRSFVGSLKLVGDG 211 +RTI + + F + +R + +FL QIR + L L+G G Sbjct: 205 VRTIMNITIEEVFPENAPRCSTLFKDDDRLRLYCVTIEGNAFLWHQIRYMMAVLFLIGKG 264 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 S+ + D K +AP L + E+ Sbjct: 265 IEKSSVITDLFTKFDGKPNYQMAPDYPLVLHNCEFK 300 >gi|159905071|ref|YP_001548733.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C6] gi|238686937|sp|A9A828|TRUA_METM6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|159886564|gb|ABX01501.1| tRNA pseudouridine synthase [Methanococcus maripaludis C6] Length = 262 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 41/246 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGR--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVSALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR-RSYLYRIIT 118 +++ ++ PV+ + + LK D + +L +D F I R Y Y + Sbjct: 60 NYIVYEMDKK--PVL--PRVQSKLKW-DGVWVLGCKEIDT-----FPEIEYRHYQYNLPN 109 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDV 177 K+ D E M+ A++ L+G H F + + P+RT+ + + Sbjct: 110 ----------------KNHDVELMKKASEKLIGTHYFQNLSKRDKSKVKDPVRTLYNIKI 153 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD-GKWTSTDLEKALQ---AQDRKECGPL 233 +S I I + SFL +R + +L+ D GK D EK ++ ++D + P Sbjct: 154 SSNDYFITIDIFGESFLWNMVRRII---RLLSDIGKHKIKDPEKFIELILSEDYSKGYPP 210 Query: 234 APPEGL 239 +P EGL Sbjct: 211 SPAEGL 216 >gi|156097182|ref|XP_001614624.1| tRNA pseudouridine synthase [Plasmodium vivax SaI-1] gi|148803498|gb|EDL44897.1| tRNA pseudouridine synthase, putative [Plasmodium vivax] Length = 241 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 26/185 (14%) Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 DL R +V K +N LK + ++++ V F AR + I R+YLY Sbjct: 19 DLQRVYV-----KEINKKLK---HMQVIDMRSVPNFFDARLNCIHRTYLY---------- 60 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + K+ + E M+ + +G HDF+ F ++ RTI F+V Sbjct: 61 ------FFMDKNYNFERMKEGCKLFLGEHDFSNFCKKRKNSTCFRRTILKFEVRRMDKKF 114 Query: 185 E-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFD 242 ++ SFL+ QIR V +L +G G DL L R + +A +GL Sbjct: 115 HYFKIKGTSFLYNQIRHMVAALFQLGTGNLEVEDLANMLNNHPCRDKNFKIADEDGLLLY 174 Query: 243 SVEYS 247 S ++S Sbjct: 175 SFKFS 179 >gi|219123859|ref|XP_002182234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406195|gb|EEC46135.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 308 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 78/312 (25%), Positives = 120/312 (38%), Gaps = 69/312 (22%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-------------------------SIQGSIEKAI 35 M Y +I+ Y+G+ + G+QRQ + ++Q +E+A+ Sbjct: 1 MPLYKLIVAYDGTRFNGFQRQSTTTDMSKKIALKRPHWDSATGKRKGIALTVQECLEQAL 60 Query: 36 FLVTGEIVVVHG-----AGRTDSGVHALRQVAHFDLVREWVPVILC---KALNAYLKISD 87 TG V AGRTD GVHA QV L P L KALN+ L + Sbjct: 61 MDWTGNETNVEAFRFRFAGRTDKGVHARGQVVAVQLPIVVEPTELWRVHKALNSRLPVDI 120 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQ-------------------APLALEKG 128 ++ + L F R + Y Y I R+ A A++ Sbjct: 121 SVERVELCENQLDFDPRHDVQSKQYSYTIKFRRKAYNEEGQLLPICTSGPQSARSAMDSP 180 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR----TIDHFDVNSF---- 180 WL P LD + Q L G+H F +F +H +A +R T+D V + Sbjct: 181 CLWLCPWVLDDSKLYELCQRLQGQHSFRSF--VH-RADRNLRDHILTLDRVWVEALSCTR 237 Query: 181 --GNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAP 235 ++ +R+ A+ F + +R+ VG V G + D + + D + AP Sbjct: 238 EDAPVVTVRLWFQAKGFRRSMVRNLVGFCVDVCRGMY-QPDWDALWEGSDEIAQKVHSAP 296 Query: 236 PEGLYFDSVEYS 247 GL +SV YS Sbjct: 297 ACGLCLESVAYS 308 >gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82] Length = 446 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 70/176 (39%), Gaps = 34/176 (19%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI-----SDTISILNLSIVDKQFHA 103 GRTD GV A QV V W + YL I DTI +L S V +F A Sbjct: 107 GRTDRGVSAAGQV-----VSLWATTSKPTFEHDYLSILNRLLPDTIRVLAWSPVAPKFSA 161 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 RFS + R Y Y + P LD M+ AA LVG HDF + Sbjct: 162 RFSCLYRHYKY----------------FFSPLGLDIPRMQQAALRLVGDHDFRNLCKLDP 205 Query: 164 QASSPI-------RTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDG 211 Q I I+ + G + + +V +FL+ Q+R + L LVG G Sbjct: 206 QKQITIFRRKVITAEIEPLSLAENGEGVYVFNLVGTAFLYHQVRHIMAILFLVGTG 261 >gi|195122857|ref|XP_002005927.1| GI20747 [Drosophila mojavensis] gi|193910995|gb|EDW09862.1| GI20747 [Drosophila mojavensis] Length = 500 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 56/259 (21%) Query: 15 YFGWQRQ------KNGSSIQG----SIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 YFGW Q + +I+G ++E+ + + H GRTD V A QV Sbjct: 109 YFGWDYQGFACQEDSADTIEGYLFRALERTCLIESRATSNYHRCGRTDKEVSAFCQVISI 168 Query: 65 DLVREWVPVILCKALNAYLKISDTISILN------------LSIVDKQFHARFSAIRRSY 112 +L + P K + +I D S+LN + + + + ARF I R+Y Sbjct: 169 NLRSKHSPDTQMKPESLNTEI-DYCSLLNRVLPKNIQCVSWMPLRNPDYSARFDCISRTY 227 Query: 113 LYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPI 169 Y PK LD ++M+ A Q LV DF F +H ++ + Sbjct: 228 RY-----------------YFPKGDLDIDSMQQACQLLVCHGDFRNFCKMDVHNGVTNYM 270 Query: 170 RTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 R + H ++ N + + + A +FL QIR + L LVG + Sbjct: 271 RNLQHAEIRPCDNTERQLEQNSGYIMYYLEIKANAFLWHQIRCIMAVLLLVGQKNEQPSI 330 Query: 218 LEKALQAQDRKECGPLAPP 236 + K L C P P Sbjct: 331 ITKLLDV-GSNPCKPQYTP 348 >gi|198429149|ref|XP_002129315.1| PREDICTED: similar to Pseudouridylate synthase 3 [Ciona intestinalis] Length = 510 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 108/289 (37%), Gaps = 86/289 (29%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG------SSIQGSIEKAIF-------LVTG--EIVVVHG 47 R + + Y G Y G+ K+ SI +E+ + L+TG ++ Sbjct: 102 RIALKVLYLGWDYVGYAFTKSSLAFSKPESISNVVERVLLEALLRQQLITGVGSVLNFDR 161 Query: 48 AGRTDSGVHALRQVAHFDLVRE-------WVPVIL-------CKALNAYLK----ISDT- 88 AGRTD V L QV ++ W P + K Y + +SDT Sbjct: 162 AGRTDRQVSGLSQVVSVNVRSNLNKGHGVWYPKVEGSDNVGNTKPETEYFEDGFPVSDTT 221 Query: 89 -------------------ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 I IL S V K F R+ R+Y Y A +G Sbjct: 222 LDDGELPYVSLLNQALPPDIRILAWSPVKKTFSPRYQCRSRTYRY---------AFVRG- 271 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP------IRTIDHFDVNSFG-- 181 S+D E M AAQ VGRHD F C+ SS +RTI+ V F Sbjct: 272 ------SMDIELMNEAAQKFVGRHDMRNF----CKVSSENAYRTYVRTINSIKVEEFNQT 321 Query: 182 NLIEIRVV-----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 NL E + A S+++ QIR + L +G G+ + +++ L + Sbjct: 322 NLPECDICVATISAESYVYKQIRRMMSILGRIGSGEIPPSTIDEMLDVE 370 >gi|301122837|ref|XP_002909145.1| tRNA pseudouridine synthase, putative [Phytophthora infestans T30-4] gi|262099907|gb|EEY57959.1| tRNA pseudouridine synthase, putative [Phytophthora infestans T30-4] Length = 510 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 97/261 (37%), Gaps = 67/261 (25%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVV------VHGAGRTDSGVHALRQV 61 Y G Y G+ RQ + + ++E+ + LV +++ GRTD GV A QV Sbjct: 81 YLGEKYAGFARQDH---MPETVERYLLEALVRSKLIENIDDAGYSRCGRTDRGVSAFGQV 137 Query: 62 ------------------AHFDLVR--EWVPVILCKALNAYLKISDTISILNLSI----- 96 A D VR E V L L D S +N ++ Sbjct: 138 VALRVRSNLPATAELLSAASIDDVRPGEKFQVRLATGEEKTLTEVDYASHINRALPADIR 197 Query: 97 ------VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 +F ARF R Y Y + + + LD E MR AAQ+LV Sbjct: 198 VYAVASCRPEFSARFDCKARMYRY----------------FFVRRDLDIEKMRTAAQYLV 241 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDV---------NSFGNLIEIRVVARSFLHTQIRSF 201 G+HDF F I R + F++ + + V R+FL Q+R Sbjct: 242 GKHDFRNFCRIDPNCHVFERNVRSFEIVECPGQRADDPSQQMYRCEVFGRAFLWHQVRCM 301 Query: 202 VGSLKLVGDGKWTSTDLEKAL 222 V L L+G G+ + + K L Sbjct: 302 VEVLFLIGSGREEPSIIPKLL 322 >gi|257387360|ref|YP_003177133.1| tRNA pseudouridine synthase A [Halomicrobium mukohataei DSM 12286] gi|257169667|gb|ACV47426.1| tRNA pseudouridine synthase [Halomicrobium mukohataei DSM 12286] Length = 263 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 32/245 (13%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA-GRTDSGVHALRQVAH 63 I Y+G Y G+QRQ + +++G + + + G++ + A GRTD+GV AL Q Sbjct: 6 IAYDGQPYHGFQRQPDVETVEGELLATLDRLGVTAGDVPAGYAAAGRTDAGVSALAQTVA 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F+ EW + A N+ L S + + + V FHA A R Y+Y Sbjct: 66 FE-APEW---LSPAAFNSELPAS--VRVWASADVPDDFHATHDAREREYVY--------- 110 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 +L + R AA L G HD F ++ S +R + D+ G Sbjct: 111 -------YLYAPERHDDRARRAADALSGEHD---FHNLTPDDSGTVRAL-SIDLTREGEF 159 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP--PEGLYF 241 + R+ A F +R VG + + G + +++ L ++ + P P L Sbjct: 160 LVCRLRAGGFCRQLVRRVVGLVDEIRRGDAPLSKVDRVLGSKPIDGAAGVGPASPTPLVL 219 Query: 242 DSVEY 246 +V+Y Sbjct: 220 VAVDY 224 >gi|50294374|ref|XP_449598.1| hypothetical protein [Candida glabrata CBS 138] gi|49528912|emb|CAG62574.1| unnamed protein product [Candida glabrata] Length = 317 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 104/276 (37%), Gaps = 54/276 (19%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTDSGV 55 +++ Y G+GY G Q +I + KA+ A RTD GV Sbjct: 2 ALVLGYLGTGYQGIQYNPPAHTIDNELFKALVATNCISQSNSDDFSKSSFSRATRTDKGV 61 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HAL + + R VP + LN L D I I ++ V K+F+AR A R Y Y Sbjct: 62 HALTNLVALKMQRYEVPQQVKAELNEILP--DDIRIWDVVPVKKKFNARVMAGTRHYRYV 119 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAA-----QHLVGRHDFTTF--RSIHCQASSP 168 I T L+ G P S D ++A +G H++ F R A SP Sbjct: 120 IPT----FLLQCG-----PHS-DLSTSQLARFKNIWNMFLGTHNYYNFTPRRKDTNADSP 169 Query: 169 --------IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV--------------GSLK 206 I+ D F + + I + +SFL QIR V S++ Sbjct: 170 QNMRHMYSIQVSDPFTIAGSTQWLSIAIHGQSFLLHQIRKMVHYALSEYHRSSSDTKSME 229 Query: 207 LVGDGKWTSTDLEKALQAQDRKECG-PLAPPEGLYF 241 L+ + DL A E PLAP GLY Sbjct: 230 LL---ETVDPDLTSATALDTPTEQYIPLAPAAGLYL 262 >gi|193666867|ref|XP_001946781.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 1 [Acyrthosiphon pisum] gi|328702018|ref|XP_003241780.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 2 [Acyrthosiphon pisum] Length = 402 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 80/225 (35%), Gaps = 52/225 (23%) Query: 15 YFGWQRQKNGSSIQGSIEKAI------------FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y GW G + Q EK I + + + H GRTD GV + QV Sbjct: 65 YLGWDYH--GFATQDVSEKTIEYELFRALTICCLIESRQTSNYHRCGRTDKGVSSFSQVI 122 Query: 63 HFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + E +P CK LN L I ++ V F ARF R+Y Y Sbjct: 123 SLTVRSNGDDSEELP--YCKMLNRLL--PKDIRVVAWGPVKDDFSARFDCGSRTYKY--- 175 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT-------------FRSIHCQ 164 W LD + M A Q +VG HDF +R I Sbjct: 176 -------------WFPRGDLDVDLMNQAIQQVVGTHDFRNLCKMDVANGVVQFYRRITSA 222 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + F N ++ E+ +V ++FL QIR V L LVG Sbjct: 223 DIKICSENNQFSKNRDYDMCELTIVGKAFLWHQIRCIVSVLILVG 267 >gi|270006513|gb|EFA02961.1| hypothetical protein TcasGA2_TC030541 [Tribolium castaneum] Length = 365 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 87/218 (39%), Gaps = 48/218 (22%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 Y GW Q G Q +IE +F + ++ H GRTD + + Sbjct: 46 YLGWDYQ--GYVTQEDTVNTIEHHVFNALIKTCLIENRSSANYHRCGRTDKDLRSNGD-- 101 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 D E + CK LN L + I + V+ F ARF R+Y Y Sbjct: 102 --DFESE---INYCKILNRVL--PENIQFVAWCPVESAFSARFDCKNRTYKY-------- 146 Query: 123 LALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNS 179 PKS LD + M+IAA +LVG HDF F ++ R I D++ Sbjct: 147 ---------FFPKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNILSVDISL 197 Query: 180 FG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 F ++ + + +FL QIR VG L LVG GK Sbjct: 198 FQEDERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGK 235 >gi|297742024|emb|CBI33811.3| unnamed protein product [Vitis vinifera] Length = 402 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 115/292 (39%), Gaps = 53/292 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----------------FLVTGEIVVV 45 + + +++ Y+G+ + GWQ+Q +++QG +E ++ V G + V Sbjct: 108 LTFKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTV- 166 Query: 46 HGAGRTDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHAR 104 AGRTD GV AL+QV F ++ V V + A+N + ++++S V + FH Sbjct: 167 --AGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAING--AAPGKLRVISVSEVSRIFHPN 222 Query: 105 FSAIRRSYLYRII------------------------TRQAPLALEKGRAWLIPKSLDCE 140 FSA R Y Y R+ P R + + L+ + Sbjct: 223 FSAKWRHYFYIFPLNDGDDGEQISENEMDIQKISFNENRKKPSTFSISRVDQLLRQLEGK 282 Query: 141 --NMRIAAQHLVGRHDF---TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 + +I A+ + T H +A+ + D ++ I +VA FL Sbjct: 283 LLSYKIFARDTKASRNIGPPTECFVFHARATEA--RLQFSDDGEGTKVMCIELVANRFLR 340 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +R V + L K + A R+ P APP+GL V ++ Sbjct: 341 KMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFT 392 >gi|225427081|ref|XP_002275354.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 448 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 22/130 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----------------FLVTGEIVVV 45 + + +++ Y+G+ + GWQ+Q +++QG +E ++ V G + V Sbjct: 123 LTFKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTV- 181 Query: 46 HGAGRTDSGVHALRQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHAR 104 AGRTD GV AL+QV F ++ V V + A+N + ++++S V + FH Sbjct: 182 --AGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAING--AAPGKLRVISVSEVSRIFHPN 237 Query: 105 FSAIRRSYLY 114 FSA R Y Y Sbjct: 238 FSAKWRHYFY 247 >gi|326773999|ref|ZP_08233281.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] gi|326636138|gb|EGE37042.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] Length = 113 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 40/69 (57%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Q Sbjct: 7 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALATVLREPVRLTVAGRTDAGVHAAAQ 66 Query: 61 VAHFDLVRE 69 VAH D+ E Sbjct: 67 VAHLDVSPE 75 >gi|224370989|ref|YP_002605153.1| TruA2 [Desulfobacterium autotrophicum HRM2] gi|223693706|gb|ACN16989.1| TruA2 [Desulfobacterium autotrophicum HRM2] Length = 257 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 36/265 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GW +Q +++ +EK + + G + G+ RTD+ V A Sbjct: 6 YLIHIQYLGFRYHGWLKQPGLKTVEAMVEKTVAFILGHSDFKILGSSRTDAMVSANHSA- 64 Query: 63 HFDL-VREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F+L V E + V L K N + + I ++ VD+ F + ++Y+Y + Sbjct: 65 -FELFVHEPLNVEQLVKDFNQ--NLPNDIRVIKAQGVDRNFSIINAPRTKAYIYLFAFGE 121 Query: 121 ------APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF----------TTFRS---I 161 APL + WL D + M+ A GRH+F TTF+ + Sbjct: 122 KCHPFCAPL-ISSFCHWL-----DIDLMKQGALLFQGRHNFRSYCTKPGTRTTFKREVLV 175 Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + I + F S+ I ++ F+ Q+R +G L +G G+ D++ + Sbjct: 176 SKIEENRIFKANFFPAESYAYHIH----SKGFMRYQVRLIMGQLLSLGRGEIGLEDIKVS 231 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 L+ +AP GL + +E+ Sbjct: 232 LKGMSHLPLRHIAPSSGLMLNKIEF 256 >gi|328876653|gb|EGG25016.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum] Length = 542 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 96/224 (42%), Gaps = 30/224 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRT 51 I +C + Y+G+ Y G Q+ S+I+ +EKA F TG I + RT Sbjct: 118 IAFC--VGYSGTNYCGMQKNWGYSTIEEELEKACFK-TGSISPNNFYSQRKIDWIRCART 174 Query: 52 DSGVHALRQVAHFDLVREWVPVILCK---ALNAYLKISDTISILNLSIVDKQFHARFSAI 108 D GV A+R + L E+ P L + A+N++L + I + + V+ FHA+ Sbjct: 175 DKGVSAVRNMVSCKL--EYDPPTLEELKNAINSHL--PEDIKVFGIKRVNNSFHAKNCVD 230 Query: 109 RRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQ--HLVGRHDFTTFRSIHCQA 165 RSYLY T P+ GR K + E R+ + +G H F + S Sbjct: 231 GRSYLYITPTFAFEPVHATSGRPETY-KFDETERSRVNSMLAMFLGTHKFHNYTSRKDSG 289 Query: 166 S-SPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVG 203 S RT+ F V + I ++ SF+ QIR +G Sbjct: 290 DPSAKRTMSLFQCSEPFVMEGIEFVSINIIGGSFMLHQIRKMIG 333 >gi|320094550|ref|ZP_08026316.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] gi|319978465|gb|EFW10042.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] Length = 94 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW Q ++QG +E + + + V AGRTD+GVHA QV Sbjct: 16 VRVRIDLAYDGTRFHGWAAQPGLRTVQGELEAVLSTLVRQPVATTVAGRTDAGVHARHQV 75 Query: 62 AHFDL 66 AH DL Sbjct: 76 AHVDL 80 >gi|316970789|gb|EFV54664.1| tRNA pseudouridine synthase A [Trichinella spiralis] Length = 390 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 114/266 (42%), Gaps = 46/266 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA---IFLVTGEIVV------VHGAGRTDS 53 +Y M + Y G Y G Q N +++ I +A + L+T + VV A RTD Sbjct: 53 KYAMFLAYRGKNYHGMQVNPNVPTVEKYIMEALQKLNLITVDQVVQPSLFKFQRAARTDK 112 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN-LSIVDKQFHARFSAIRRSY 112 GV A +Q+ L P I K +DT+++LN L K F ++ RSY Sbjct: 113 GVSATKQICSLLL-----PTIEGKE-------NDTVNLLNGLQRATKSFDSKKWCDYRSY 160 Query: 113 LYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQAS 166 Y + + Q+ L +K R L K ++ E RI Q+ VG H+F F S +H S Sbjct: 161 SYTLPSYCFRHQSDLERDKFR--LDNKDIE-EINRILMQY-VGTHNFYNFTSGKLHKDES 216 Query: 167 SPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 I F N+ L + + +SFL QIR +G + G DL+ Sbjct: 217 CKRFIIRCECGKRFLYNNIEYLT-VDIKGQSFLIHQIRKMIGFCISLIRG-----DLDPC 270 Query: 222 LQA---QDRKECGPLAPPEGLYFDSV 244 LQ Q+ + P AP GL + V Sbjct: 271 LQQKVWQNERIKVPKAPSLGLVLEEV 296 >gi|84996449|ref|XP_952946.1| tRNA-pseudouridine synthase I [Theileria annulata strain Ankara] gi|65303943|emb|CAI76322.1| tRNA-pseudouridine synthase I, putative [Theileria annulata] Length = 480 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 96/242 (39%), Gaps = 49/242 (20%) Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDK------- 99 + RTD GVH++ V+ +LV E C+ L+ K + D++ S+ + Sbjct: 217 SSRTDRGVHSMGTVSLINLVSEIYLFQACQYLSFDKKFNFDSLEEFQDSLNKRLPSDIRV 276 Query: 100 ---------QFHARFSAIRRSYLYRIITRQAPLALEKGRAW-----------LIPKSLDC 139 +F+ R I +SY Y++ P E+ W L+ K D Sbjct: 277 TSVITPPHDEFNVRHHNIGKSYSYKVDLSPNPSLFERNHYWQIMSDTHFVNTLLRKYRDV 336 Query: 140 ------ENMRIAAQHLVGRHDFTTFRSIHCQAS------SPIRTIDHFDVNSFGNL---- 183 E ++ AA+ G+H+F FR +C+ + PI TI + F N+ Sbjct: 337 KAPFSFEKLKEAARVFHGKHNFEAFRK-NCRGNERDKIIDPICTIHSIE---FVNIPQDK 392 Query: 184 -IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +EI V FL+ +R V L L G +++AL P AP GLY Sbjct: 393 KVEIIVNGDRFLYKMVRCIVSHLILAGFNVIKPDQIKRALDNATEIPNIPYAPAHGLYLK 452 Query: 243 SV 244 V Sbjct: 453 KV 454 >gi|300175988|emb|CBK22205.2| unnamed protein product [Blastocystis hominis] Length = 399 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 104/283 (36%), Gaps = 81/283 (28%) Query: 20 RQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDSGVHALRQV---------- 61 +Q +G + S+E AIF + ++ GRTD+GV A QV Sbjct: 11 QQIDGVADDNSVESAIFSALKRVHLIDDISKCHYQRCGRTDAGVSAFNQVISLYLRSNLR 70 Query: 62 AHFDLVREWVPVILCKALNAYLK-----------------------ISDTISILNLSIVD 98 + + V E+ P I A N + + TI I VD Sbjct: 71 SGVEFVDEFDPSIPYNAPNTSNQPQSAPSSSTPVTEFDYASVLNKVLPPTIRITGWCPVD 130 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + F AR+S + + A R + + ++ D E MR A + G HDF F Sbjct: 131 RSFSARYSCCGEDWAANLS------AGRVYRYYFLRRNYDVELMRSAVKLFEGEHDFRNF 184 Query: 159 RSIHCQASSPIRTIDHFDVNSF------GNLIEIR-------------VVARSFLHTQIR 199 C+ ID +V F G+++EIR +V R+FL QIR Sbjct: 185 ----CR-------IDAVNVCDFTRTVFRGDVVEIRKGETPQHDVLAVEIVGRAFLWHQIR 233 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGL 239 + L LV K T + L + C P LA PE L Sbjct: 234 CMMSILFLVASKKEKQTIISDLLDVS-KSPCKPQYHLADPEPL 275 >gi|13541901|ref|NP_111589.1| tRNA pseudouridine synthase A [Thermoplasma volcanium GSS1] gi|24212574|sp|Q979R4|TRUA_THEVO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14325334|dbj|BAB60238.1| pseudouridylate synthase I [Thermoplasma volcanium GSS1] Length = 246 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 39/245 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y Y G + G+QR S++ +I KA+ L + ++ A RTD GV AL V + Sbjct: 5 YFFKFGYIGYMFTGYQRGNGVKSVEDTIIKALNLNSPSLI--KTAARTDRGVSALSNVFY 62 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R P + +N+ ++ + + + + V+ + R+ + +Y+Y Sbjct: 63 IETERR--PQDIAGIINSK---NEYVFVHSFAEVEHGRNPRYCDTK-TYMY--------- 107 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--SFG 181 ++P +C+++ + A +G HDF+ F + +P R+ID + SFG Sbjct: 108 --------MLPGETECDSLMVTASGFLGFHDFSKFSKKDTR--NPWRSIDEVKCHRESFG 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++E A+SFL Q+R + + K + +APPE L Sbjct: 158 VVLEFS--AKSFLWNQVRRMLAFILEFRGNKIDPFSVSNIYSH--------IAPPENLIL 207 Query: 242 DSVEY 246 + Y Sbjct: 208 KDIVY 212 >gi|134046431|ref|YP_001097916.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C5] gi|132664056|gb|ABO35702.1| tRNA pseudouridine synthase [Methanococcus maripaludis C5] Length = 262 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 39/245 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDKVPLYHGGRTDRGVAALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ PV+ + + LK D I +L K+ R Y Y + Sbjct: 60 NYVVYEMDKK--PVL--PRVQSKLKW-DGIWVLGC----KEIEIFPEIEHRHYQYTLPN- 109 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN 178 K+ D E M+ A++ L+G H F + + P+RT+ ++ Sbjct: 110 ---------------KNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKIS 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD-GKWTSTDLEKALQ---AQDRKECGPLA 234 S I I + SFL +R + +L+ D GK D EK ++ +++ K+ P + Sbjct: 155 SNDYFITIDIFGESFLWNMVRRII---RLLSDIGKHKIEDPEKFIELILSEEYKKGYPPS 211 Query: 235 PPEGL 239 P EGL Sbjct: 212 PAEGL 216 >gi|45357831|ref|NP_987388.1| tRNA pseudouridine synthase A [Methanococcus maripaludis S2] gi|62901319|sp|Q6M0K2|TRUA_METMP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|45047391|emb|CAF29824.1| tRNA pseudouridine synthase Related [Methanococcus maripaludis S2] Length = 262 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 35/243 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR-RSYLYRIIT 118 +++ ++ PV+ + + LK D I +L ++ F I R Y Y + Sbjct: 60 NYVVYEMDKK--PVL--PRVQSKLKW-DGIWVLGCKKIE-----IFPEIEHRHYQYTLPN 109 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDV 177 K+ D E M+ A++ L+G H F + + P+RT+ + Sbjct: 110 ----------------KNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKI 153 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD-LEKALQAQDRKECGPLAPP 236 +S I I + SFL +R + L +G K + + + + ++D K+ P +P Sbjct: 154 SSNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPPSPA 213 Query: 237 EGL 239 EGL Sbjct: 214 EGL 216 >gi|327311135|ref|YP_004338032.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20] gi|326947614|gb|AEA12720.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20] Length = 250 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 39/247 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI Y ++ Y+GS ++G+ + S++ ++ +A+ + G RTD GV AL Sbjct: 1 MIAY--LVAYDGSLFYGFTGHER--SVEPALARALGPLLGR------GSRTDPGVSALGN 50 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + R P+ +NA ++ + + + V + F+ R A R+Y+Y R Sbjct: 51 VV---VARSLKPL---GQINA--ELPRGVWVWGYAEVPEGFNPR-RARARTYVYFAPYRG 101 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L L +R AA VG HD+ F + TI +V Sbjct: 102 EDLGL----------------VREAASLFVGTHDYRNFAK---GVRDAVTTIYSIEVEDR 142 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G IEI + F + +R V +L VG G D+ + L++ P AP EGL Sbjct: 143 GAYIEIAFRGKGFRNKMLRKIVWALLAVGRGVLGIDDVRRLLESGGGGPV-PSAPAEGLV 201 Query: 241 FDSVEYS 247 S++Y Sbjct: 202 LLSIDYG 208 >gi|195382396|ref|XP_002049916.1| GJ20484 [Drosophila virilis] gi|194144713|gb|EDW61109.1| GJ20484 [Drosophila virilis] Length = 509 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 93/236 (39%), Gaps = 63/236 (26%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 106 YFGWDYQ--GFACQEDSMDTIEAYLFRALIRTCLIESRATSNYHRCGRTDKEVSAFCQVI 163 Query: 63 HFDLVREWVPVILCK--ALNAYLKISDTISILN------------LSIVDKQFHARFSAI 108 DL + P + + AL++ + D S+LN + + + + ARF I Sbjct: 164 SIDLRSKHAPDVQMEPEALSSEI---DYCSLLNRVLPKNIQCVSWMPLRNPAYSARFDCI 220 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQA 165 R+Y Y PK LD E MRIA Q LV DF F +H Sbjct: 221 SRTYRY-----------------YFPKGDLDIEAMRIACQSLVCHGDFRNFCKMDVHNGV 263 Query: 166 SSPIRTI--------DHFDVNSFGN----LIEIRVVARSFLHTQIRSFVGSLKLVG 209 ++ +R + D+ D+ N + + + +FL QIR + L LVG Sbjct: 264 TNYMRNLQGAAIKPCDNTDIQMHSNSGYAMYYLEIQGNAFLWHQIRCIMAVLLLVG 319 >gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris RN66] gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris RN66] Length = 332 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 96/261 (36%), Gaps = 35/261 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AGRTDSG 54 R+ I Y G+ Y+G Q + +IE+ + + ++ GRTD G Sbjct: 26 RFLFRISYIGTNYYGMAYQ---NETIPTIEREFYNACLRLKLIKNREDCDLIRCGRTDKG 82 Query: 55 VHALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VH+ +L R+ P + +N L I IL V+ F ARF R Y Sbjct: 83 VHSTGNYISINLRTRDTSPYNYQEMINGVLPWD--IRILGFCQVNNNFSARFDCDSRVYK 140 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIR 170 Y Q L +D M + + +G HDF F + + + +R Sbjct: 141 YIFPIDQIQNFEHNYFPKLNINHID--QMNKSCKQFIGTHDFRVFCKMDIKNRPNQTYVR 198 Query: 171 TIDHFDVNSFGN----------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 TI F V F N L I ++ +FL Q+R VG L + GK Sbjct: 199 TIYDFRVEVFNNNKISSSSFDNSINDTKLGVITIIGSAFLWHQVRLMVGILFEISLGKIR 258 Query: 215 STDLEKALQAQDRKECGPLAP 235 S + K L K+ P P Sbjct: 259 SECITKLLDNYFDKDEIPFFP 279 >gi|170068141|ref|XP_001868750.1| pseudouridylate synthase [Culex quinquefasciatus] gi|167864259|gb|EDS27642.1| pseudouridylate synthase [Culex quinquefasciatus] Length = 470 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 102/266 (38%), Gaps = 65/266 (24%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 Y GW Q G + Q +IE +F + ++ H GRTD GV A QV Sbjct: 82 YLGWDFQ--GYATQEDSANTIEHHLFNALTRVCLIESRESSNYHRCGRTDKGVSAFHQVV 139 Query: 63 HFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 D+ ++ P + C+ LN L ++ + + + + ARF R Sbjct: 140 SLDVRSKFPPESQLAPESLQNELNYCQLLNRVLP-AEIRCVAWMPTANPNYSARFDCRSR 198 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDF------------TT 157 +Y Y P+ SLD + MR + LVG HDF T Sbjct: 199 TYRY-----------------FFPRGSLDVDAMRKGCEFLVGSHDFRNLCKMDVGNGVVT 241 Query: 158 F-RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 F R++H + IR +S +++ + ++FL Q+R + L LVG G+ T Sbjct: 242 FQRNVH---YAVIRDSLKDGGDSSYDMLYFELRGKAFLWHQVRCIMAILILVGQGREDPT 298 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFD 242 + + L E P P L D Sbjct: 299 VIRELLDV----EKNPRKPQYSLAND 320 >gi|268529206|ref|XP_002629729.1| C. briggsae CBR-TAG-124 protein [Caenorhabditis briggsae] gi|187038647|emb|CAP22290.1| CBR-TAG-124 protein [Caenorhabditis briggsae AF16] Length = 401 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 90/247 (36%), Gaps = 72/247 (29%) Query: 15 YFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGA--------GRTDSGVHALRQVAHF 64 Y GW+ + Q ++E + + ++ + GRTD GV A +Q A F Sbjct: 38 YLGWEHDGLVQQPNTQNTVEHHLMEALIKTHIIEDSIKCDFSRCGRTDKGVSAFKQTAAF 97 Query: 65 DLVREWVP-------------------------VILCKALNAYLKISDTISILNLSIVDK 99 L R P + K LN L TI + + V Sbjct: 98 -LARSTCPDHPNVFWSDSTAEDVKNSYKSKDEELPYIKMLNGVL--PKTIRVFAWAPVAP 154 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF 158 F+ARF RR+Y Y PK+ LD E MR AA+ L+G HD++ F Sbjct: 155 TFNARFDCNRRTYKYSF-----------------PKAGLDLEKMREAAKLLIGEHDYSNF 197 Query: 159 RSIHCQA----SSPIRTIDHFDV----------NSFGNLIEIRVVARSFLHTQIRSFVGS 204 I S R I +DV N +++E+ V FL IR V Sbjct: 198 CQIDMNKMRLEQSYTRKI--YDVTVEQVSTHSENDIYSMVELTVSGSGFLWHMIRYIVTV 255 Query: 205 LKLVGDG 211 L+ V G Sbjct: 256 LQEVARG 262 >gi|307184937|gb|EFN71202.1| tRNA pseudouridine synthase A [Camponotus floridanus] Length = 330 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 114/276 (41%), Gaps = 49/276 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGE------IVVVHGAGRTDSG 54 + +++ Y G Y+G QR +I+ + A+ L+T E + A RTD G Sbjct: 48 HAILLGYLGKDYYGMQRNPGMKTIEEDLVTALLKADLITTEHFKNIRSISFQRAARTDKG 107 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+RQ+ L + ++ K L D I I + V K F+++ R+Y Y Sbjct: 108 VSAIRQIVSLKLPEKPDKTVINKFL------PDVIKIFGIKRVTKGFNSKNQCDARTYRY 161 Query: 115 RIIT---------------------RQAPLALEKGRAW----LIPKSLDCENMRIAAQHL 149 I T R L+ G+++ L P+SL+ N + + + Sbjct: 162 IIPTFAFAPEDLTLLKIGEEINEEERIKQLSTIDGKSYVDYRLSPESLNRLNSIL--KLM 219 Query: 150 VGRHDFTTFRS-IHCQASSPIRTIDHFD-VNSF-GNLIE---IRVVARSFLHTQIRSFVG 203 G H+F F S + R I F V +F N +E + + +SF+ QIR V Sbjct: 220 EGTHNFHNFTSKVKPLDPRAQRYIIKFHCVETFISNGMEFAILEIKGQSFMLHQIRKMVA 279 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + + +A + DR E P+AP GL Sbjct: 280 VVVGIARNIISEEIINEAFKTMDRLEI-PIAPSLGL 314 >gi|325182027|emb|CCA16480.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 209 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 45/204 (22%) Query: 84 KISDTISILNLSIVDKQFHARFSAIR---RSYLYRIITRQAP-LALEKGRAWLIPKSLDC 139 ++ TI + L+ ++ +F F+ IR + Y+Y I P L L K +W + K ++ Sbjct: 4 RLPSTIRVHCLAPLE-EFVDDFTRIRPRYKRYVYYIQQGARPDLELSK-YSWFLRKRIEP 61 Query: 140 ENMRIAAQHLVGRHDFTTF--------------RSIHCQASSPIRTIDHFDVN------- 178 ++ A L+G HDF F R+++ QAS ++ +F ++ Sbjct: 62 TRLQQALNFLLGTHDFEPFSQGLGMVLEGKSTTRTLY-QASVTLKRNVNFCLDPAVCGSG 120 Query: 179 ---------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + I I +VA FL +R VGSL+L+G+G ++ + L+ Sbjct: 121 DTVNNQAKLCDMEGKTLTHFICIELVANGFLRHMVRRIVGSLRLIGEGSQHPQEMHRILK 180 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 +Q E GP AP +GL+ + ++ Sbjct: 181 SQ--VEAGPSAPAKGLWLQQIWFT 202 >gi|332520423|ref|ZP_08396885.1| Pseudouridine synthase I, TruA, alpha/beta domain [Lacinutrix algicola 5H-3-7-4] gi|332043776|gb|EGI79971.1| Pseudouridine synthase I, TruA, alpha/beta domain [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 28/230 (12%) Query: 36 FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDT-----IS 90 F++ G+ +GRTD+ V A L + P+ + A+LK+ +T I Sbjct: 8 FILEGKRFKSLASGRTDAMVSAEETAIELFL---YEPI---EDQKAFLKLFNTNLPQDIR 61 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 L ++ VD +F+ + + Y+Y I LD E M+I A+ Sbjct: 62 ALEITEVDAKFNIINNPKVKEYIYLFAFGDKFHPFCAPILTTILDDLDVEIMKIGAKLFE 121 Query: 151 GRHDFTTF------------RSIHCQ-ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 G H T+ + C+ + I T + F S+ +RV + F+ Q Sbjct: 122 GEHYLKTYCYKPSNNGIYTREILTCEIVENTIYTANFFPKKSYL----LRVRGKGFMRNQ 177 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 IR +G+L +G GK T D++ +L+ + + +AP GL S+++ Sbjct: 178 IRLMMGTLIDLGKGKLTLEDIKASLEPDNTIKMEYIAPASGLILKSLKFD 227 >gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe 972h-] gi|74698445|sp|Q9UTB3|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05 gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe] Length = 450 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 71/167 (42%), Gaps = 20/167 (11%) Query: 49 GRTDSGVHALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV A+ QV ++ E P+I C LN L I I + + F ARFS Sbjct: 146 GRTDKGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPAD--IRITGYAFPPEGFDARFSC 203 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QA 165 +R Y Y + T+ P SLD + M AA +G HDF F I Q Sbjct: 204 KQRHYKY-LFTKDYPGG-----------SLDIDRMNEAAALYLGEHDFRNFCKIDASKQI 251 Query: 166 SSPIRTIDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 ++ R I V + L + +FL Q+R + L L+G Sbjct: 252 TNYHRRILSSKVICIDPSTGLYAFDLQGTAFLWHQVRCMMAILFLIG 298 >gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo] Length = 710 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 93/245 (37%), Gaps = 65/245 (26%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 70 IAYLGWGYQGFASQENTSN---TIEEKLFEALKKTRLVDSRQTSNYHRCGRTDKGVSAFG 126 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISD----------------------TISILNLSIV 97 QV DL K LN S+ I +L + V Sbjct: 127 QVISLDLRSNLSKE---KKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPV 183 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 + F ARFS ++R+Y Y P A LD M+ AAQ VG HDF Sbjct: 184 EPDFSARFSCLKRTYRYFF-----PCA-----------DLDVALMQAAAQRYVGTHDFRN 227 Query: 158 FRS-------IHCQASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGS 204 I+ Q + + D + G L + V ++FL+ Q+R + Sbjct: 228 LCKMDVANGVINFQRTILSAQVTWVDGGAEGGLRDPFRLCQFEVTGQAFLYHQVRCMMAI 287 Query: 205 LKLVG 209 L L+G Sbjct: 288 LFLIG 292 >gi|298208691|ref|YP_003716870.1| tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] gi|83848614|gb|EAP86483.1| tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] Length = 266 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/262 (23%), Positives = 108/262 (41%), Gaps = 27/262 (10%) Query: 2 IRYCMIIE--YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 +RY II+ Y G + GWQ+Q + ++++ +E+ + V G + + +GRTD+ V Sbjct: 10 LRYYYIIQLQYLGFRFHGWQKQPDVNTVERMVERTLAYVLGHKKFKLLASGRTDAKVSVN 69 Query: 59 RQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + + + V K N + + I L++ D F+ + Y+Y Sbjct: 70 NTFVELFIDDKPLEVDSFFKDFN--VNLPQDIKALSIKETDANFNIIQHPKLKEYIYLFT 127 Query: 118 TRQAPLALEKGRAWLIP------KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 EK + P K L+ E M+ AA G HDF + + + I Sbjct: 128 YG------EKMHPFCAPYMVCYNKPLNIELMQEAAALFQGEHDFKNYTYKPTEDTQTIGV 181 Query: 172 IDH--------FDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 ID + N F ++VV + F QIR +G+L +G G++ +K L Sbjct: 182 IDACELSENTVYTANFFPEKSYMLKVVGQGFKRHQIRLMMGALFDLGSGEFDMQFFKKTL 241 Query: 223 QAQDRKECGPLAPPEGLYFDSV 244 + + + +A GL SV Sbjct: 242 TSTEFIKLTHIAQASGLILQSV 263 >gi|332029057|gb|EGI69071.1| tRNA pseudouridine synthase A [Acromyrmex echinatior] Length = 398 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 115/285 (40%), Gaps = 51/285 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGE------IVVVHGAGRTDSG 54 + M++ Y G Y+G QR +I+ + A+ L+T E + A RTD G Sbjct: 45 HAMLLGYVGKDYYGMQRNPGMKTIEEDLIIALLKADLITKEQFENTRAINFQRAARTDKG 104 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+RQ+ L ++ N +L D I + + V K F+++ R+Y Y Sbjct: 105 VSAIRQIVSLKLPENSNKTVI----NQFL--PDAIRVFGIKRVTKGFNSKNQCDARTYRY 158 Query: 115 RIIT---------------------RQAPLALEKGRAW----LIPKSLDCENMRIAAQHL 149 I + R L++ G+ + L P+SLD N + Sbjct: 159 VIPSYAFALEDQSLLKLGEEVDEDERIKQLSIIDGKPYTDYRLSPESLDRLNSILKL--F 216 Query: 150 VGRHDFTTFRS----IHCQASSPIRTI---DHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 G H+F F S + +A I + + F +N L + + +SF+ QIR V Sbjct: 217 EGSHNFHNFTSKVKPLDPRARRYIISFCCTETFVLNDI-ELAVLEIKGQSFMLHQIRKMV 275 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + + +++A + D+ + PLAP GL V Y Sbjct: 276 AIVIAIARNMISKETIDEAFKTMDKMDL-PLAPSLGLCLCHVHYD 319 >gi|325068064|ref|ZP_08126737.1| tRNA pseudouridine synthase A [Actinomyces oris K20] Length = 89 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ +V E V + AGRTD+GVHA Q Sbjct: 7 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALAIVLREPVRLTVAGRTDAGVHAAAQ 66 Query: 61 VAHFDLVRE 69 V H D+ E Sbjct: 67 VVHLDVSPE 75 >gi|148683103|gb|EDL15050.1| mCG23338, isoform CRA_a [Mus musculus] Length = 130 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-------------NLIEIRV 188 M+ AAQHL+G HDF+ F+S ++ +RT+ V+ + Sbjct: 4 MQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEF 63 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++SFL+ Q+R L VG G T ++ L++QD K +AP GL+ SV Y Sbjct: 64 ESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLFLKSVLY 123 >gi|118101846|ref|XP_417852.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 390 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 96/246 (39%), Gaps = 67/246 (27%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALR 59 I Y G GY G+ Q+N S+ +IE+ +F + +V H GRTD GV A Sbjct: 72 IAYLGWGYQGFASQENTSN---TIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVSAFG 128 Query: 60 QVAHFDL---VREWVPVILCKA------------------LNAYLKISDTISILNLSIVD 98 QV DL + E + C LN L I +L + V+ Sbjct: 129 QVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPD--IRVLAWAPVE 186 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 F ARFS ++R+Y Y P A LD M AAQ VG HDF Sbjct: 187 PDFSARFSCLKRTYRYFF-----PCA-----------DLDVALMHTAAQRYVGTHDFRNL 230 Query: 159 RSIHCQASSPI---RTIDHFDV------------NSFGNLIEIRVVARSFLHTQIRSFVG 203 + A+ I RTI V + F L + V ++FL+ Q+R + Sbjct: 231 CKMDV-ANGVINFQRTILSAQVTWADGGAESGLRDPF-RLCQFEVTGQAFLYHQVRCMMA 288 Query: 204 SLKLVG 209 L L+G Sbjct: 289 ILFLIG 294 >gi|320591696|gb|EFX04135.1| pseudouridylate synthase 3 [Grosmannia clavigera kw1407] Length = 522 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 99/260 (38%), Gaps = 60/260 (23%) Query: 5 CMIIEYNGSGYFGWQRQKNGS--SIQGSIEKA------IFLVTG----EIVVVH----GA 48 + + Y G Y G++ Q +G+ +I+ + KA +F G E+ +V Sbjct: 61 ALKLAYLGKRYGGFEYQPSGALPTIEEELWKALTKACLVFPAPGASADEVDLVRCEYSKC 120 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GRTD GV A QV VR + K LN L D + + F ARFS Sbjct: 121 GRTDRGVSAFGQVVAL-RVRSNKRAVYAKVLNRLLP-PDIRVLAWCATPPADFSARFSCR 178 Query: 109 RRSYLYRII---------TRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF 158 R Y Y +R P + G A P LD + MR AA VG HDF F Sbjct: 179 ERQYRYFFTQPAYFTEDGSRPGPTS-SAGSASQPPDGWLDIDAMRDAATRFVGLHDFRNF 237 Query: 159 RSIHCQASSPIRTIDHF-------------DVNS-------------FGNLIEIRVVARS 192 C+ P + I +F DV+S F + V + Sbjct: 238 ----CKV-DPSKQITNFERRIFAAGITEVADVHSSLRCLSSSASSVSFPRVYSFDVRGSA 292 Query: 193 FLHTQIRSFVGSLKLVGDGK 212 FL QIR V L LVG G+ Sbjct: 293 FLWHQIRHMVAVLFLVGQGR 312 >gi|260781560|ref|XP_002585875.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae] gi|229270936|gb|EEN41886.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae] Length = 312 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 71/183 (38%), Gaps = 49/183 (26%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGVH 56 + + Y G Y G+Q Q+ + +IE +F + ++ H GRTD GV Sbjct: 71 ALKVAYLGWSYDGFQSQE---TTDNTIEARLFEALTKTRLIEKRQSSNYHRCGRTDKGVS 127 Query: 57 ALRQVAHFDLV-------------------REWVPVILCKALNAYLKI-SDTISILNLSI 96 A QV DL RE K + K+ I +L + Sbjct: 128 AFGQVISLDLRTNLTDGAGVIPRPEGTANHREGDKTTEIKYVYILNKVLPPDIRVLAWAP 187 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDF 155 VD F ARFS +R+Y Y PK +LD ++M +A Q LVG HDF Sbjct: 188 VDPDFSARFSCQQRTYKY-----------------FFPKGNLDIQSMHLAGQKLVGEHDF 230 Query: 156 TTF 158 F Sbjct: 231 RNF 233 >gi|330793042|ref|XP_003284595.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum] gi|325085509|gb|EGC38915.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum] Length = 473 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 87/223 (39%), Gaps = 24/223 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHG-----AGRTDS 53 + +++ Y G Y G Q+ +I+ +E AIF G + H RTD Sbjct: 69 KVAVLLGYLGKNYAGMQKNPGLRTIEEELEMAIFKAGGILPDNLYFQHKIDWVRCARTDK 128 Query: 54 GVHALRQVAHFDLVREWVPVIL---CKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 GV ALR V + E P L KALN L + I + + V+ FHA+ R Sbjct: 129 GVSALRNVVSLKM--EVGPPELDEMVKALNKLL--PEDIHVFKIMRVNNSFHAKNGVDAR 184 Query: 111 SYLYRIITR--QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASS 167 SY+Y T + A K E + + +G H F + S S Sbjct: 185 SYVYVCPTSAFEPKFATNKLVEPFKFTEETRETLNRVLSYYLGNHRFHNYTSRKESNDVS 244 Query: 168 PIRTIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSL 205 R I F+ + ++ I V+ SF+ QIR +G L Sbjct: 245 VFRKIIKFECSVPFILEGVEMVSINVIGESFMLHQIRKMIGCL 287 >gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi] Length = 423 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 100/267 (37%), Gaps = 62/267 (23%) Query: 15 YFGWQ------RQKNGSSIQG----SIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 YFGW ++ + +I+G ++ + + + E H GRTD GV A RQV Sbjct: 68 YFGWSYHGFAVQEDSPMTIEGHLFNALSRTCLIRSRETSNYHRCGRTDKGVSAFRQVVSI 127 Query: 65 DLVREWVP-----------------------VILCKALNAYLKISDTISILNLSIVDKQF 101 +L + + CK LN+ L D I + ++ F Sbjct: 128 ELRSNLLEGPGVFDYPECRAHSRPNPTTNEEIDYCKILNSNLP-PDIQVIAWAPLTNRDF 186 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARF R Y Y PL + D ++ A L+G HDF F + Sbjct: 187 SARFDCKIREYKYIF-----PLGAAR----------DLSRIQEAGAKLLGSHDFRNFCKM 231 Query: 162 HCQAS--SPIRTIDHFDVNSFGN-------LIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + IR + V+ + L+E+++V +FL QIR V L +G G Sbjct: 232 DVSNGVLTYIRRMLEVSVSPLESSSTDSYSLVELKIVGNAFLWHQIRCIVTVLFHIGQGL 291 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++ L + P P GL Sbjct: 292 EEPSLIDELLDVEKH----PRRPQYGL 314 >gi|328770686|gb|EGF80727.1| hypothetical protein BATDEDRAFT_3084 [Batrachochytrium dendrobatidis JAM81] Length = 289 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 89/231 (38%), Gaps = 46/231 (19%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHALRQ 60 I Y G Y+G+ N S +++ I KA+ + G GRTD GV A Q Sbjct: 30 ISYIGDKYYGFASASNDSVPTVESYIFKALEVARLIPSDGGACAWSRCGRTDKGVSAFDQ 89 Query: 61 VAHFDLVR----------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 V VR +W + LN L D I +L S VD F ARF+ R Sbjct: 90 VVSV-WVRTARPGDRDTLDWDQLPYLNILNRLL--PDDIRVLAWSPVDPIFDARFTCSHR 146 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-- 168 Y Y + LD MR AA VG HD I ++ Sbjct: 147 KYNY----------------FFDGAGLDLIAMRDAASRFVGTHDCRHICKIDPTKAAREG 190 Query: 169 --IRTIDHFD-----VNSFGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDG 211 +RTI D V+ + + VV R+FL Q+R+ + L L+G G Sbjct: 191 FFVRTIMECDIVPVPVDGAPDRFHVLVVKGRAFLWHQVRNMMALLFLIGRG 241 >gi|167524395|ref|XP_001746533.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774803|gb|EDQ88429.1| predicted protein [Monosiga brevicollis MX1] Length = 415 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 32/262 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----------VVVHGAGRTD 52 +Y +++ + G+ Y G QR +I+ ++ +A+ LVTG I + RTD Sbjct: 32 KYALLMGFQGTSYAGMQRNIGFETIESTLLRAL-LVTGCIDKNNYETPQSMHFQRCARTD 90 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA RQV ++ V LNA K+ D I I K F+ + + R Y Sbjct: 91 KGVHAARQVVAMRMILTENTV---DELNA--KLPDDIRIFGAFRTTKGFNPKNACTGRRY 145 Query: 113 LYRIITRQAPLALEKGRAWLIPK-SLDCENM---RIAAQHLVGRHDFTTFRSIHCQASSP 168 Y + T AL +P+ +D + R + +G H F F + + Sbjct: 146 EYLLPT----YALMPKEKVPVPEYRVDEPKLTWFRETLKRYIGTHKFHNFTAGKSASDDS 201 Query: 169 IRT-IDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 R I F V+ + I+V +SF+ QIR +G + G +++ Sbjct: 202 CRRYITDFTVSEPFEREGIEWVRIQVKGQSFILHQIRKMIGLAVAIVRGHVKDDYMDRCF 261 Query: 223 QAQDRKECGPLAPPEGLYFDSV 244 D + P P GL+ D V Sbjct: 262 --SDERVDVPKIPGLGLFLDCV 281 >gi|297723909|ref|NP_001174318.1| Os05g0279300 [Oryza sativa Japonica Group] gi|255676206|dbj|BAH93046.1| Os05g0279300 [Oryza sativa Japonica Group] Length = 133 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 5/65 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 ++ M+I Y+G+ + GWQ Q + +IQ SIE A+ +T E+ +V GAGRTD+GVHA Sbjct: 62 KWRMVIAYDGTKFKGWQYQPSPPTIQCSIENALTRITKLDRKELCLV-GAGRTDTGVHAW 120 Query: 59 RQVAH 63 H Sbjct: 121 GGAFH 125 >gi|48477852|ref|YP_023558.1| tRNA pseudouridine synthase A [Picrophilus torridus DSM 9790] gi|62901313|sp|Q6L0Y7|TRUA_PICTO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|48430500|gb|AAT43365.1| tRNA pseudouridine synthase A [Picrophilus torridus DSM 9790] Length = 251 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 33/197 (16%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---VHGAGRTDSGVHALRQVAHFDL 66 Y+G+ + G+ R S+ + S+E I V E + + A RTD V A V F + Sbjct: 15 YDGTKFEGFDR----SNSKNSVESVIINVLSEYNITKNIESAARTDKNVSAAGNV--FYI 68 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 E P + ILN +I + FH+ + + SY I R + + Sbjct: 69 KTEERP-------------EKILGILNGNIKNMFFHSYY--LSNSY---INPRYNSMKIY 110 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 K ++IP +D ++ +G HDFT F +P+RTI+ + + + + Sbjct: 111 K---YIIPYRIDSR-LKNNIARFLGTHDFTNFSK--NDYRNPVRTINKIEFEEYNDFTVV 164 Query: 187 RVVARSFLHTQIRSFVG 203 +SF+ Q+RS +G Sbjct: 165 NFYGKSFVWHQLRSIIG 181 >gi|71985046|ref|NP_496062.3| Temporarily Assigned Gene name family member (tag-124) [Caenorhabditis elegans] gi|1353139|sp|Q09524|TG124_CAEEL RecName: Full=Probable tRNA pseudouridine synthase tag-124; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|3875428|emb|CAA87378.1| C. elegans protein E02H1.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 402 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 75/198 (37%), Gaps = 56/198 (28%) Query: 49 GRTDSGVHALRQVAHFDLVREWVP-------------------------VILCKALNAYL 83 GRTD GV A +Q A +VR P + K LN L Sbjct: 82 GRTDKGVSAFKQTAAM-VVRSLCPGDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVL 140 Query: 84 KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 TI + + V + F+ARF RR+Y Y +A L LEK MR Sbjct: 141 --PKTIRVFAWAPVAQTFNARFDCNRRTYKYSFA--KADLNLEK--------------MR 182 Query: 144 IAAQHLVGRHDFTTFRSIHCQAS----SPIRTIDHFDV--------NSFGNLIEIRVVAR 191 A+ LVG HDF+ F I S +R + V N +++E+ V Sbjct: 183 QGAELLVGEHDFSNFCQIDMNEKRLLQSYVRKVYEVKVEQVSTHPENDMYSMVELTVSGS 242 Query: 192 SFLHTQIRSFVGSLKLVG 209 FL IR V L+ +G Sbjct: 243 GFLWHMIRYIVTILQEIG 260 >gi|118782859|ref|XP_312543.3| AGAP002409-PA [Anopheles gambiae str. PEST] gi|116129767|gb|EAA08062.3| AGAP002409-PA [Anopheles gambiae str. PEST] Length = 451 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 106/268 (39%), Gaps = 44/268 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVH 56 +++ Y+G YFG QR +I+ + +A+ + + A RTD GV Sbjct: 115 ILLGYSGVNYFGMQRNPGTKTIEEDLLRAMQKREWINDEGFRQPQQIQFQRAARTDKGVS 174 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV L + +ALN+ L + I + + V K F+++ + R+Y Y + Sbjct: 175 AAMQVVSIKLPDN----LDIEALNSEL--PEDIRVYAVKRVTKGFNSKTNCDARTYTYTL 228 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRS-IHCQA 165 T EK +D + R+ A+ L VG +F F S Sbjct: 229 PTIAFAPNEEK---------VDIQTYRLPAERLARVNEVLALYVGTKNFHNFTSRKEFLD 279 Query: 166 SSPIRTIDHFDVN-------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 S R I F+ + S I++ +SF+ QIR VG V G S + Sbjct: 280 PSVKRFIMSFECDPPFLPEGSTAEFATIKIKGQSFMLHQIRKMVGLTIAVVRGLAESDII 339 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 EKA QDR P AP GL + Y Sbjct: 340 EKAF-GQDRYGI-PTAPGLGLVLSRIHY 365 >gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp. lyrata] gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp. lyrata] Length = 443 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 95/242 (39%), Gaps = 59/242 (24%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVH 56 + I Y G ++G+ + + ++ SIE +F ++ G GRTD GV Sbjct: 94 LKIMYFGKRFYGFSAE---AQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGVS 150 Query: 57 ALRQV-AHFDLVREWVPVILCKA-LNA---------YLKI-----SDTISILNLSIVDKQ 100 + QV A F R P KA +N Y+++ D I ++ S Sbjct: 151 STGQVIALFLRSRLKSPPGDSKAQVNGKTGERPEYDYVRVLNRALPDDIRVIGWSPAPVD 210 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-- 158 FHARFS R Y Y + ++L+ M IA + +G HDF F Sbjct: 211 FHARFSCYAREYKY----------------FFWRQNLNLSAMDIAGKKFIGEHDFRNFCK 254 Query: 159 ---RSIHCQASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVG 209 ++HC R + F+V+ N L + +FL QIR V L ++G Sbjct: 255 MDVANVHCYT----RRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIG 310 Query: 210 DG 211 G Sbjct: 311 QG 312 >gi|307212020|gb|EFN87913.1| tRNA pseudouridine synthase 3 [Harpegnathos saltator] Length = 368 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 47/230 (20%) Query: 10 YNGSGYFGWQRQKNGSS-----IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 Y G Y G+ Q++ ++ + ++ K+ + + E H GRTD GV + QV Sbjct: 25 YLGWNYDGFTVQEDSNATIEHHLFAALTKSCCIESRETSNYHRCGRTDKGVSSFCQVISL 84 Query: 65 DLVREWVP---------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 D+ + P + CK LN L + I + + F ARF R Y Y Sbjct: 85 DIRSKLEPEQQSNLSKELPYCKILNKLLPTN--IRCIAWCPISSDFSARFDCKYRKYKY- 141 Query: 116 IITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDF------------TTFRSIH 162 P+ +LD + M A ++++G DF T F+ Sbjct: 142 ----------------FFPRGNLDIDAMDKAVKYVIGEFDFRNICKMDVANGVTNFKRKV 185 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 A + D ++ ++ E+ + +++FL QIR +G L LVG + Sbjct: 186 IDAKISMNN-QAVDKSTGYDICELEITSQAFLWHQIRCLMGILLLVGKKR 234 >gi|125811944|ref|XP_001362058.1| GA15853 [Drosophila pseudoobscura pseudoobscura] gi|54637235|gb|EAL26638.1| GA15853 [Drosophila pseudoobscura pseudoobscura] Length = 497 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 85/230 (36%), Gaps = 55/230 (23%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 110 YFGWDYQ--GFACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAFCQVI 167 Query: 63 HFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 DL + P + C LN L + + + + + ARF R Sbjct: 168 SIDLRSKHTPDTQLEPASLSSEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFDCTSR 226 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASS 167 SY Y PK LD E MR A + LVG DF F +H + Sbjct: 227 SYRY-----------------YFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHNGVTK 269 Query: 168 PIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 IR + V NS ++ + + A +FL QIR + L LVG Sbjct: 270 FIRNLQAARVEPCVEMLNNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVG 319 >gi|157822927|ref|NP_001102169.1| tRNA pseudouridine synthase-like 1 [Rattus norvegicus] gi|149024843|gb|EDL81340.1| similar to pseudouridylate synthase-like 1, isoform CRA_a [Rattus norvegicus] Length = 127 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 15/120 (12%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-------------NLIEIRV 188 M+ AAQHL+G HDF+ F+S +RT+ V+ + Sbjct: 1 MQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLEF 60 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++SFL+ Q+R L VG G T ++ L++QD K +AP GL+ SV Y Sbjct: 61 ESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAHGLFLKSVLY 120 >gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis] Length = 444 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 87/229 (37%), Gaps = 50/229 (21%) Query: 14 GYFGWQRQKNGSSIQG------SIEKAIFLVTGEIVVVHG----------AGRTDSGVHA 57 Y GW NG +IQ ++E I + +V GRTD GV A Sbjct: 103 AYLGWNY--NGLAIQKDATPLPTVEGTILETMNKCKLVPSMVPQEYKFSRCGRTDRGVSA 160 Query: 58 LRQV------------AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 + QV D + + LN L +S + L K F ARF Sbjct: 161 MNQVISLRVRSNLTAEEQLDPSYDDKEIQYVNILNQILPEDIRVSAVCLR-PPKGFDARF 219 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-- 163 S R Y Y + + LD E M++AA+H G HDF F + Sbjct: 220 SCKSRHYKYLFSS----------------EGLDLERMQLAAKHYEGEHDFRNFCKLDGSK 263 Query: 164 QASSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 Q ++ RTI ++ ++ +V +FL Q+R V +L LVG G Sbjct: 264 QITNYKRTIKSSNIMHVSEDMYCFDLVGSAFLWHQVRCMVANLFLVGQG 312 >gi|149024844|gb|EDL81341.1| similar to pseudouridylate synthase-like 1, isoform CRA_b [Rattus norvegicus] Length = 127 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 15/120 (12%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI-------------EIRV 188 M+ AAQHL+G HDF+ F+S +RT+ V+ + + Sbjct: 1 MQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLEF 60 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++SFL+ Q+R L VG G T ++ L++QD K +AP GL+ SV Y Sbjct: 61 ESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAHGLFLKSVLY 120 >gi|195171697|ref|XP_002026640.1| GL11833 [Drosophila persimilis] gi|194111566|gb|EDW33609.1| GL11833 [Drosophila persimilis] Length = 421 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 85/230 (36%), Gaps = 55/230 (23%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 110 YFGWDYQ--GFACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAFCQVI 167 Query: 63 HFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 DL + P + C LN L + + + + + ARF R Sbjct: 168 SIDLRSKHTPDTQLEPASLSSEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFDCTSR 226 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASS 167 SY Y PK LD E MR A + LVG DF F +H + Sbjct: 227 SYRY-----------------YFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHNGVTK 269 Query: 168 PIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 IR + V NS ++ + + A +FL QIR + L LVG Sbjct: 270 FIRNLQAARVEPCVEMLNNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVG 319 >gi|170583043|ref|XP_001896407.1| tRNA pseudouridine synthase family protein [Brugia malayi] gi|158596407|gb|EDP34752.1| tRNA pseudouridine synthase family protein [Brugia malayi] Length = 234 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 53/198 (26%) Query: 15 YFGWQ------RQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 YFGW+ +++ +++ + KA+ + E + +GRTD GV A +QVA Sbjct: 38 YFGWEYNGLVEQREIARTVEEEMRKALIKTKLVENWENCSWNRSGRTDKGVSAFKQVASV 97 Query: 65 DLVRE---------WVPVILCKALNA------YLKISDT-----ISILNLSIVDKQFHAR 104 +VR W V + A Y+K+ ++ I +L + V + F AR Sbjct: 98 -IVRSNEPEGEGVFWPNVAHASSETAMKGELQYVKMLNSTLPTNIRVLAWAPVPRNFSAR 156 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHC 163 ++ +R+Y Y P++ + E MR A Q LVG HDF F I Sbjct: 157 YNCTQRTYTY-----------------AFPRTNFNIEAMRQACQFLVGEHDFRNFCRIDM 199 Query: 164 QAS----SPIRTIDHFDV 177 + IRTI + D+ Sbjct: 200 NKKRVEMNYIRTITYADI 217 >gi|219120809|ref|XP_002185636.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582485|gb|ACI65106.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 293 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 113/289 (39%), Gaps = 52/289 (17%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA---------GRTDSGVHA 57 ++ Y G+ Y G+Q + Q E A+ + G+ GRTD GVHA Sbjct: 2 LLAYVGTNYGGFQINDGQRTPQAEFELAMLRTRLLLPCNFGSPHKYSWSTSGRTDKGVHA 61 Query: 58 LRQV--AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY- 114 QV A +L+ + + +N L D + +L++ + F A+ R Y Y Sbjct: 62 CAQVVSAKVELLPDQTMAEVRDEMNTVL--PDDVRVLDVVRTTRNFCAKTQRDRVRYQYM 119 Query: 115 ------------RIITRQAPLALEKGRA---WLIPKSLDC-----ENMRIAAQHLV---- 150 R++ + +G++ L+P+ L ++ R H+ Sbjct: 120 IPSFVFADADTLRVLFKDVVGHSNRGQSKAELLLPEELKSIQSALKDFRANPMHIAKLQE 179 Query: 151 ------GRHDFTTF-RSIHCQASSPIRTIDHFDVNS---FGNLIE---IRVVARSFLHTQ 197 G H F F R + + R I+ F V F N +E +V+ +SFL Q Sbjct: 180 ALQVYEGTHAFHNFSRGVKANEARAARYIERFHVEEPIVFPNGVEWIPTQVLGQSFLLNQ 239 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 IR V V G T++ +AL+ Q +AP +GL+ + Y Sbjct: 240 IRKMVCMAMDVARGVVPLTNVSRALERQSDVRIN-VAPAQGLFLEMSYY 287 >gi|66812718|ref|XP_640538.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4] gi|60468568|gb|EAL66571.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4] Length = 504 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/319 (23%), Positives = 119/319 (37%), Gaps = 95/319 (29%) Query: 5 CMIIEYNGSGYF--GWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVH--GAGRTDS 53 M+ Y+G+GY+ G+Q SI+ IEK +F GE+ + + RTD Sbjct: 92 AMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHSSRTDK 151 Query: 54 GVHALRQVAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GVH+L V LV + + +N YL S I + + V + F AR Sbjct: 152 GVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSS--IRLFSACKVSRSFQARKKG 209 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG---RHDFTTFRSIHC- 163 I RSY Y + + +L ++ + M Q+ +G H+FT+ R+ + Sbjct: 210 IERSYNYMVPS-----------EYL--NNIKIDEMNKILQNFIGINSYHNFTSKRNTYLS 256 Query: 164 ------------------------------------------------QASSPIRTIDHF 175 S+ IR I F Sbjct: 257 NNNNKNHEKDEKDEEDGDEEEEEDDEVEVENSNNNNSNYRLNEKLLFRNNSTNIRNIKSF 316 Query: 176 DVNSFGNLIEIR--------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 V + +IEI+ ++ SF+ QIR VG + G T LE +L++ Sbjct: 317 YVEN--EIIEIKGKGWYKFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLKSP-F 373 Query: 228 KECGPLAPPEGLYFDSVEY 246 C P APP LY +V++ Sbjct: 374 SICVPTAPPFPLYLFNVKF 392 >gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium parvum Iowa II] gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium parvum Iowa II] Length = 283 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 96/239 (40%), Gaps = 34/239 (14%) Query: 17 GWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSGVHALRQVAHFDL--- 66 +Q+ +I+G I KA+ + + ++V GRTD GVH+ +L Sbjct: 8 AFQKDDKIPTIEGEIYKALLQLRLIKDIDSCDLV---RCGRTDRGVHSAGNYISVNLRTR 64 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + P + LN L I ++ V F ARF R Y Y PL E Sbjct: 65 AKNLEPYNYMEMLNGVLPWD--IRVIGYCEVRPDFSARFDCEYRLYKYFF-----PLNHE 117 Query: 127 KGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHFDVNSFG 181 + + PK M +AA+ +G HD+ F + + + IRTI FD+N Sbjct: 118 RTKISKFPKIPPEQVPLMNVAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDINFVD 177 Query: 182 NLIEIRVVA------RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 E R A +FL Q+R +G L +G K+ + + L ++K L+ Sbjct: 178 ---ENRTFAVATIKGSAFLWHQVRLMMGILFEIGQQKFNPEVITQMLTDVEQKNIAELS 233 >gi|241713555|ref|XP_002412103.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215505180|gb|EEC14674.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 398 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/270 (24%), Positives = 102/270 (37%), Gaps = 67/270 (24%) Query: 15 YFGWQ------RQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 Y GW ++ ++++ ++ +A+ L E H GRTD GV A QV Sbjct: 10 YLGWNYDGYVVQEDTANTVEAALFQALQRTRLLDLRETSNYHRCGRTDKGVSAFSQVISI 69 Query: 65 DL-----------------VREWVPVILCKALNAYLKISD-----TISILNLSIVDKQFH 102 DL + + V L+ Y+KI + I +L + + F Sbjct: 70 DLRSNLTEGPEGTAPSARSIHSVISVARSTELD-YVKILNGVLPPDIRVLAWAPAEPSFS 128 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSI 161 ARF R+Y Y +PK +L + MR AA+ LVG HDF + Sbjct: 129 ARFDCQARTYRY-----------------FLPKGNLVVQRMREAAKLLVGEHDFRNLCKM 171 Query: 162 HCQASSP-----IRTIDHFDVNSFGN-------LIEIRVVARSFLHTQIRSFVGSLKLVG 209 I + + +D G+ ++ + +V ++FL Q+R V L LVG Sbjct: 172 DVGNGVTRYVRRILSTELYDGEPEGDGGSSGYQMLCLEIVGQAFLWHQVRCIVAILLLVG 231 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + K L E P P G+ Sbjct: 232 QGLEEPEVVSKLLDV----EAHPCKPQYGM 257 >gi|303245000|ref|ZP_07331323.1| tRNA pseudouridine synthase A [Methanothermococcus okinawensis IH1] gi|302484652|gb|EFL47593.1| tRNA pseudouridine synthase A [Methanothermococcus okinawensis IH1] Length = 263 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 36/244 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y + + YN Y G+Q Q + ++ I A+ +L +I+ GRTD GV A+ Sbjct: 2 YILKVAYNKHHY-GFQTQPHKETVCDKIMDALKECNYLANDKIIFC--GGRTDKGVSAIG 58 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 +L +E P++ + Y K+ + I I +D ++ YR I Sbjct: 59 NFIVVELSQE--PILS----HIYSKLKNKGIWIFGYKKIDTIPEVKYRH------YRYIL 106 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDV 177 P E +I A++ L+G H F + + SPIRTI +D+ Sbjct: 107 PIIPHIDEYNIDLMIE----------ASKKLIGEHSFHNLSKKDRTKEKSPIRTI--YDI 154 Query: 178 NSFGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 NL I I V+ +SFL +R + +L VG +++ L ++ K P AP Sbjct: 155 KIEKNLYYITIDVIGKSFLWNMVRKIITALSEVGKENKPVGWIDELL-CENHKGGVPPAP 213 Query: 236 PEGL 239 EGL Sbjct: 214 AEGL 217 >gi|73994983|ref|XP_852307.1| PREDICTED: similar to tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Canis familiaris] Length = 409 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 112/273 (41%), Gaps = 46/273 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + +G I HG Sbjct: 62 KIVLLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRCA 120 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 121 RTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCDA 175 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + E+ R++A+ L G H+F F Sbjct: 176 RTYFYMLPT----FAFAHKD-----HDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFT 226 Query: 160 SIHC--QASSPIRTIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S +AS+ +D F F I+V +SF+ QIR VG L + G Sbjct: 227 SQKGPQEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYA 286 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LE++ D K P AP GL + V + Sbjct: 287 PESVLERSW--GDAKVDVPKAPGLGLVLERVHF 317 >gi|134114618|ref|XP_774017.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256647|gb|EAL19370.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var. neoformans B-3501A] Length = 514 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 28/145 (19%) Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 K LN+ L S I IL S + F +RFS R Y Y TR P + E Sbjct: 214 KLLNSVLPPS--IRILAWSPIPASFDSRFSCTYRHYRYAFHTRPTPTSPE---------- 261 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-----------DVNSFGN-LI 184 LD E MR AQ L+G HD+ F C+ + +H + G+ ++ Sbjct: 262 LDLELMRQGAQLLLGEHDYRNF----CKLDGSKQIENHTRGVLKAWFEGGESQGVGDGMM 317 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVG 209 ++ +FL Q+R + L LVG Sbjct: 318 VFNLIGTAFLWHQVRHIIAVLFLVG 342 >gi|221113814|ref|XP_002153998.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 267 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 41/184 (22%) Query: 15 YFGWQRQ--KNGSSIQGSIEKAIF-------LVTGEIVVVHG-AGRTDSGVHALRQVAHF 64 Y GW Q N + +IE AIF L+ ++ + GRTD GV A QV Sbjct: 87 YLGWDYQGLANQETTNNTIEDAIFNAMIKAKLIEDRVLCKYSRCGRTDKGVSAFGQVIAL 146 Query: 65 DL-----------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 ++ RE + + + LN L I +L + V + F ARF R Y Sbjct: 147 NVRSNTLVSEEEDTREEISYV--RLLNKIL--PPEIRMLAFARVPQDFDARFDCDTRMYK 202 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + K +D + M AAQ VG DF F S ++++D Sbjct: 203 Y----------------FFPAKRMDIKLMDAAAQKFVGEKDFRNFCKFIILTQSWLKSVD 246 Query: 174 HFDV 177 F + Sbjct: 247 LFKI 250 >gi|149237835|ref|XP_001524794.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL YB-4239] gi|146451391|gb|EDK45647.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL YB-4239] Length = 491 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 47/250 (18%) Query: 14 GYFGWQRQ----KNGSSIQGSIEKAIFLVTGEIVVVH---------GAGRTDSGVHALRQ 60 Y GW +N + ++E+ I ++ ++ GRTD GV A+ Q Sbjct: 136 AYLGWNYNGLAFQNDPTPLPTVEEIILKALAKVKLIREPIEEVEYSKCGRTDKGVSAMNQ 195 Query: 61 VAHFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 V L P V +NA L + + L + F ARFS Sbjct: 196 VISIKLRSNLTPQEQQDPAFDAKEVDYFTVINANLPADIKVHAICLRPPE-NFDARFSCK 254 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QAS 166 R Y Y + R+ +LD + M AA++ G HDF F + Q + Sbjct: 255 ERHYRY--LFRKT-------------STLDIDLMAQAAEYYEGLHDFRNFCKLDGSKQLT 299 Query: 167 SPIRTIDH---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 S +R I ++S GNL ++ +FL Q+R V L LVG K S ++ K L Sbjct: 300 SFVRDIRRSKIIPLDSDGNLYCFDLIGNAFLWHQVRCMVAILFLVGQ-KLESPEIVKDLM 358 Query: 224 AQDRKECGPL 233 + P+ Sbjct: 359 DVTKFPTKPM 368 >gi|213513998|ref|NP_001134221.1| tRNA pseudouridine synthase A [Salmo salar] gi|209731596|gb|ACI66667.1| tRNA pseudouridine synthase A [Salmo salar] Length = 392 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 111/271 (40%), Gaps = 41/271 (15%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AG 49 + +++ Y+G GY+G QR GSS +IE + + +G I HG Sbjct: 51 KVVLLLAYSGKGYYGMQRNA-GSSQFKTIEDELVTALIKSGCIPDNHGDDMKKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV L W+ + + +N+ L I +L L V F+++ S Sbjct: 110 RTDKGVSAAGQVVSLKL---WMIEDVMEKINSNL--PPQIRVLGLKRVTGGFNSKNSCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAW--------LIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 R+Y Y + T +A + L P++L N + G H+F F S Sbjct: 165 RTYSYMLPT----VAFSPKDYYTKNYAAFRLEPETLQRVNQLFGS--YKGTHNFHNFTSQ 218 Query: 162 HCQ-ASSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 S R I V EI V +SF+ QIR +G + V G ++ Sbjct: 219 KAAWDPSARRYITEMSCGEPFVRGGAEFAEITVRGQSFMMHQIRKMIGLVIAVVKG-YSG 277 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ K +++ + P AP GL + V + Sbjct: 278 DEVLKRSWGEEKVDV-PKAPGLGLVLEKVHF 307 >gi|156088547|ref|XP_001611680.1| tRNA pseudouridine synthase A family protein [Babesia bovis] gi|154798934|gb|EDO08112.1| tRNA pseudouridine synthase A family protein [Babesia bovis] Length = 248 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 40/230 (17%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGA----GRTDSGVHALRQ 60 M Y G+GY G Q + ++++G + +A+ L V++ GRTD VHAL Sbjct: 15 MDFSYIGTGYHGLAYQSDEPNTVEGHLFRALSLANVASDVLNNGYERCGRTDRDVHALHN 74 Query: 61 VAHF--DLVREWVP----------VILCKALNAYLK-----ISDTISILNLSIVDKQFHA 103 A F D P V C +N + K + I + + V F + Sbjct: 75 YASFFPDPCPPNSPCSTVSPDERGVGPCYRINTFTKAINKHLPRGIRVNWVKHVPDDFSS 134 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIH 162 R + R Y Y + S+D ++ A +H +G+H+F F ++ + Sbjct: 135 RRNCTFRVYKY----------------FFQLGSMDLSLIQDACRHFLGQHNFNQFCKTDN 178 Query: 163 CQASSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDG 211 TI F+V + L+ + + R+FL Q+R +G L VG+G Sbjct: 179 RNPKDSHGTIYSFEVERYNELLCVATICGRAFLWHQVRCMMGVLFKVGEG 228 >gi|281200681|gb|EFA74899.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500] Length = 1052 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 28/156 (17%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I +L S + F+ARFS + R+Y Y + P +LD M+ A + Sbjct: 891 IRVLGWSPIPFHFNARFSTLYRTYKY----------------FFDPSNLDLNLMKEAGKS 934 Query: 149 LVGRHDFTTFRSIHCQA-SSPIRTIDHFDVN-------SFGNLIEIRVVARSFLHTQIRS 200 +G HDF+ F I ++ S R I FD+ S + + +FL QIR Sbjct: 935 YIGEHDFSNFCKIDLESVKSFTRVILSFDIQPVESGDFSTSGMYVATICGYAFLWHQIRC 994 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + L L+G K+ +T + L G + PP Sbjct: 995 MMAMLFLIGQKKFPTTIIADLLDLSK----GIVKPP 1026 >gi|195026984|ref|XP_001986382.1| GH21331 [Drosophila grimshawi] gi|193902382|gb|EDW01249.1| GH21331 [Drosophila grimshawi] Length = 503 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 91/236 (38%), Gaps = 61/236 (25%) Query: 15 YFGWQRQKNGSSIQG----SIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 105 YFGWDYQ--GFACQEDSNETIEAFLFRALIRTCLIESRATSNYHRCGRTDKEVSAFCQVI 162 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILN------------LSIVDKQFHARFSAIRR 110 DL + P + ++ + +I D S+LN + + + + ARF I R Sbjct: 163 SIDLRSKHAPDVQLESDSLATEI-DYCSLLNRVLPKNIQCVSWMPLRNHVYSARFDCISR 221 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASS 167 +Y Y PK LD E MR+A +V DF F +H ++ Sbjct: 222 TYRY-----------------YFPKGDLDIEAMRMACDLIVCHGDFRNFCKMDVHNGVTN 264 Query: 168 PIRTID--------------HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 +R + D+NS + + + A +FL QIR + L LVG Sbjct: 265 YMRNLQAARIQACEGTAVEVENDLNSGYTMYYLEIQANAFLWHQIRCIMAVLLLVG 320 >gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger] Length = 517 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 72/182 (39%), Gaps = 25/182 (13%) Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFS 106 AGRTD GV A QV VR +P + LN L + I +L + F ARFS Sbjct: 165 AGRTDRGVSAFGQVIGI-RVRNELPYV--SMLNKVL--PEDIRVLAWCPRPPEGFDARFS 219 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKS------------LDCENMRIAAQHLVGRHD 154 R Y Y Q + G + +P+ LD E MR AA++ G HD Sbjct: 220 CGERHYKYFFT--QPAFSPTPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHD 277 Query: 155 FTTFRSIHC--QASSPIRTIDHFDVNSFGNLIEIRVV---ARSFLHTQIRSFVGSLKLVG 209 F F + Q S R I ++ V +FL Q+R V L LVG Sbjct: 278 FRNFCKLDVTKQIESFYRDIFQSSAAPLPTAAQVYVFHLEGSAFLWHQVRHMVNVLFLVG 337 Query: 210 DG 211 G Sbjct: 338 QG 339 >gi|66805521|ref|XP_636482.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] gi|60464862|gb|EAL62978.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] Length = 491 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 22/146 (15%) Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 E +P I K LN L I IL + V F+ARFS + R+Y Y Sbjct: 207 EELPYI--KMLNGVL--PPEIRILAWAPVPFHFNARFSTLSRTYKY-------------- 248 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN--LIEI 186 + P LD M+ A++ +G H++ F I S +R I FD+ N L Sbjct: 249 --FFNPNGLDLNLMKEASKLYLGEHNYINFCKIDVNVKSFMRVILQFDIEKVENSELYVA 306 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGK 212 + +FL QIR + L L+G K Sbjct: 307 TIKGFAFLWHQIRCMMAVLFLIGQKK 332 >gi|150400022|ref|YP_001323789.1| tRNA pseudouridine synthase A [Methanococcus vannielii SB] gi|150012725|gb|ABR55177.1| tRNA pseudouridine synthase [Methanococcus vannielii SB] Length = 265 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 34/242 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y I Y+G F Q +N I ++ + +L GEI + +G GRTD GV AL Sbjct: 2 YIFKIAYDGRYSFQSQPHRNTVCDKITDTLLECGYLKEGEIPISYG-GRTDLGVSALGNY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +++ + V + L+ + I IL + + ++ Sbjct: 61 IVYNITEKPVLSRIYSKLHKH-----GIWILGFNEL---------------------KEL 94 Query: 122 PLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 P + +++P + D E M+ A++ L+G H F + + SPIRTI + + Sbjct: 95 PDVKYRHYRYILPNTGQDIELMKKASEKLIGTHSFHNLSKRDKTKNRSPIRTIYNIKIAK 154 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD--LEKALQAQDRKECGPLAPPE 237 I I + +SFL +R V L VG K+ + ++ L R P A E Sbjct: 155 NEYFITIEIFGKSFLWNMVRKIVRLLSNVGLSKYKEFEKFIDDLLDRDVRMGVQP-ASAE 213 Query: 238 GL 239 GL Sbjct: 214 GL 215 >gi|281340805|gb|EFB16389.1| hypothetical protein PANDA_012338 [Ailuropoda melanoleuca] Length = 359 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 113/266 (42%), Gaps = 30/266 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AG 49 + +++ Y+G GY G QR GSS +IE + + +G I HG Sbjct: 29 KIVLLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRCA 87 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 88 RTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCDA 142 Query: 110 RSYLYRIIT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR-HDFTTFRSIHCQA 165 R+Y Y + T ++ R L ++L N +A H+FT+ + H +A Sbjct: 143 RTYFYMLPTFAFAHKDHDVQDERYRLSAETLRRVNGLLACYRGTHNFHNFTSQKGPH-EA 201 Query: 166 SSPIRTIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 S+ +D F F I+V +SF+ QIR VG + V G + LE++ Sbjct: 202 SARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLERS 261 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 262 W--GEAKVDVPKAPGLGLVLERVHFE 285 >gi|320163253|gb|EFW40152.1| tRNA-pseudouridine synthase [Capsaspora owczarzaki ATCC 30864] Length = 548 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 98/253 (38%), Gaps = 74/253 (29%) Query: 14 GYFGWQRQKNGSSIQGSIE----------KAIFLVTGEIVVVHG-AGRTDSGVHALRQVA 62 Y GW+ NG +IQ +E K L+ + GRTD+GV A QV Sbjct: 147 AYLGWK--YNGLAIQPDVETVEGHLISALKTCMLIPDLSWANYSRCGRTDAGVSAFGQVV 204 Query: 63 HFDL---VREWVPVIL------------CKALNAYL--------KISDTISILNLSIVDK 99 D+ + E V VI +A +A L ++ I ++ + V Sbjct: 205 SLDVRTNLTEGVGVIQQESAIPFQKGRKTEATHAELEYVFKLNRQLPADIRVVAWTPVPL 264 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF 158 F ARFS + R Y Y PK+ ++ E M+ AAQ+ VG HD+ F Sbjct: 265 AFDARFSCLYRKYKY-----------------FFPKNNMNIEAMQRAAQYFVGTHDYRNF 307 Query: 159 --RSIHCQASSPIRTIDHFDV--------NS----------FGNLIEIRVVARSFLHTQI 198 + S +R I FDV NS + E+ V+ +FL+ Q+ Sbjct: 308 CKTNFDNGVKSFVRRILAFDVVKSTCLPINSATDATDLEGQAAEMYELNVLGFAFLYHQV 367 Query: 199 RSFVGSLKLVGDG 211 R L +VG G Sbjct: 368 RCMTSILFMVGQG 380 >gi|156538138|ref|XP_001608257.1| PREDICTED: similar to pseudouridylate synthase [Nasonia vitripennis] Length = 437 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 50/285 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGEI------VVVHGAGRTDSG 54 Y M++ Y G Y+G QR ++I+ + KA+ L+T E + A RTD G Sbjct: 74 YAMMLGYCGKNYYGMQRNPGFNTIEEELIKAMLKADLITSEAFETIQNINFQRAARTDKG 133 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+RQV L + + + L + I + + V K F+++ R+Y Y Sbjct: 134 VSAVRQVVSLKLPEDPSKDSINETL------PEDIRVFAIKRVTKGFNSKSQCDARTYSY 187 Query: 115 RIIT-RQAPLALE---------------------KGRA---WLIPKSLDCENMRIAAQHL 149 + T AP LE G+ + +P+ E + + L Sbjct: 188 TMPTFALAPENLELFQEMSEYNDVEKRMEQLSTIDGKPFHEYRLPQERK-EKLTELLKVL 246 Query: 150 VGRHDFTTFRS----IHCQASSPIRTI---DHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 G H+F F S + +A I + + F VN+ I ++V +SF+ QIR V Sbjct: 247 EGTHNFHNFTSKVLPLDPRAKRYIMSFIAEEPFLVNNM-EFITLKVKGQSFMLHQIRKMV 305 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + V + EK + Q + + +AP GL + V Y Sbjct: 306 AMVIGVIRNIVPREEFEKTVFEQAKYDIT-IAPSLGLMLNIVHYD 349 >gi|261350284|ref|ZP_05975701.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374] gi|288861068|gb|EFC93366.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374] Length = 288 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 48/254 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + K ++ + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +N L D I IL + V F R++ +R+ YR Sbjct: 61 SLGNVISFQSEKE----VRVNEINNSL--PDDIQILAKAPVRFGFKPRYAEMRQ---YRY 111 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L LD + A+ G H+FT F + ++ RTID Sbjct: 112 V--------------LFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTT--RTIDDIK 155 Query: 177 V----------NSFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + F NL + + + SFL +R + V GK + LEK Sbjct: 156 ITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLS---LEK 212 Query: 221 ALQAQDRKECGPLA 234 + + E P A Sbjct: 213 VEELLNPAENDPRA 226 >gi|18399149|ref|NP_564438.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana] gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana] gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 446 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 94/242 (38%), Gaps = 59/242 (24%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVH 56 + I Y G ++G+ + + ++ SIE +F ++ G GRTD GV Sbjct: 94 LKIMYFGKRFYGFSAE---AQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGVS 150 Query: 57 ALRQV-AHFDLVREWVPVILCKA-LNA---------YLKI-----SDTISILNLSIVDKQ 100 + QV A F R P KA +N Y+++ D I ++ S Sbjct: 151 STGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPID 210 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-- 158 FHARFS R Y Y + ++L+ M A + +G HDF F Sbjct: 211 FHARFSCYAREYKY----------------FFWRQNLNLSAMDFAGKKFIGEHDFRNFCK 254 Query: 159 ---RSIHCQASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVG 209 ++HC R + F+V+ N L + +FL QIR V L ++G Sbjct: 255 MDVANVHCYT----RRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIG 310 Query: 210 DG 211 G Sbjct: 311 QG 312 >gi|256371245|ref|YP_003109069.1| tRNA pseudouridine synthase [Acidimicrobium ferrooxidans DSM 10331] gi|256007829|gb|ACU53396.1| tRNA pseudouridine synthase [Acidimicrobium ferrooxidans DSM 10331] Length = 294 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 97/258 (37%), Gaps = 21/258 (8%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +++ Y+G + G Q ++ G++ A+ LV + AGRTD+GVHA Q+ Sbjct: 9 LVVGYDGREFAGAAPQPGVRTVVGALRSALELVLQRPTSLAIAGRTDAGVHARAQLVSVP 68 Query: 66 L-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 L R LC L + + + ++ AR A R YLYR+ Sbjct: 69 LQPGERARLGDVERLCGRLGRL--AGRGLWVRSAGVLPGSVDARRVARWRHYLYRLDLGH 126 Query: 121 APLALEKGRAWLIPKSLDCENMRI-----AAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +GR L P + C + + A L G D T R + Sbjct: 127 GD---RRGRVILEPTAWACGPLELDVLAGALATLRGDLDATGLCRAGAAGGYRRRVLSTR 183 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +++ V+ SF H +R VG+ V G+ + + +R +AP Sbjct: 184 VWARARDRVDVSVIGVSFCHEFVRRAVGNAVAVAQGRLDGERWREGVDRGERALLATVAP 243 Query: 236 PEGLYF------DSVEYS 247 P GL D E+S Sbjct: 244 PWGLSLWRVGLEDGWEWS 261 >gi|123483294|ref|XP_001323995.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121906870|gb|EAY11772.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 346 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 44/269 (16%) Query: 5 CMII--EYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEI-----VVVHGAGRTDS 53 C++I Y G+GY G Q + +I + EK+ L G + + A RTD+ Sbjct: 32 CVVIYFRYIGTGYHGLQYNEKVRTIDSDLFEGLEKSGILPEGSYKRRGKIAWNEASRTDA 91 Query: 54 GVHALRQVAHF------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GVHA Q+ F D+ +P ++ K L + TI I++ + F + A Sbjct: 92 GVHACGQLICFKSYEICDMECSQIPELINKNLPS----DSTIKIMSCLCTNSPFPVKDFA 147 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-S 166 R Y Y + PL + P LD +I +G+H+F + + + Sbjct: 148 THRKYNYLL-----PLHVFSSTD---PDHLDYLRQKICPL-FIGQHNFHNYTNGTPKTYK 198 Query: 167 SPIRTIDHFDVNSFGNLIEIR--------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 R I F +FG++ I + SF+ QIR + + + T ++ Sbjct: 199 GAQRFITDF---TFGDVFTINGEEYVLFYIRGISFMLNQIRKMISMVTAASFNQVTPEEV 255 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++L + + L P +GL+ D +EY Sbjct: 256 SRSLTEETCR--IQLLPGDGLFLDQIEYE 282 >gi|301775629|ref|XP_002923235.1| PREDICTED: tRNA pseudouridine synthase A-like [Ailuropoda melanoleuca] Length = 426 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 113/265 (42%), Gaps = 30/265 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AG 49 + +++ Y+G GY G QR GSS +IE + + +G I HG Sbjct: 90 KIVLLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRCA 148 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 149 RTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCDA 203 Query: 110 RSYLYRIIT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR-HDFTTFRSIHCQA 165 R+Y Y + T ++ R L ++L N +A H+FT+ + H +A Sbjct: 204 RTYFYMLPTFAFAHKDHDVQDERYRLSAETLRRVNGLLACYRGTHNFHNFTSQKGPH-EA 262 Query: 166 SSPIRTIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 S+ +D F F I+V +SF+ QIR VG + V G + LE++ Sbjct: 263 SARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLERS 322 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 + K P AP GL + V + Sbjct: 323 W--GEAKVDVPKAPGLGLVLERVHF 345 >gi|290562699|gb|ADD38745.1| tRNA pseudouridine synthase 3 [Lepeophtheirus salmonis] Length = 420 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 110/271 (40%), Gaps = 60/271 (22%) Query: 8 IEYNGSGYFGWQRQKNGS-SIQGSIEKAIF----LVTGEIVVVHGAGRTDSGVHALRQVA 62 I Y G Y G+ Q++ +I+ + KA+ + + E H GRTD GV A RQV Sbjct: 64 ITYFGWNYHGFTTQEDSCMTIEAHLFKALLTTCLIQSRETSNYHRCGRTDKGVSAFRQVI 123 Query: 63 HFDL---VREWVPVI---LCKALN--------AYLKISDTISILNLSIV------DKQFH 102 D+ ++E + V CKA + Y+KI ++ ++ ++ +++ Sbjct: 124 SIDVRTNLKEGIGVFDYPDCKADSRPDMPHEIDYIKIINSNLPPDIQLIAWTPAQNRELS 183 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARF +R+Y Y PL K + M A LVG HDF F + Sbjct: 184 ARFDCKKRTYKYFF-----PLGSIKSLS----------KMNEAGAKLVGSHDFRNFCKM- 227 Query: 163 CQASSPIRTIDHFDVNSFGNLIE--------------IRVVARSFLHTQIRSFVGSLKLV 208 S+ + T VN +++E ++V +FL QIR V L + Sbjct: 228 -DVSNGVLTYIRRMVNVSTSVLEPSKEKESSPYDLCVLKVEGNAFLWHQIRCIVTVLFHI 286 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G G+ +++ L E P P GL Sbjct: 287 GQGREEPELIDELLDI----EKNPCRPQYGL 313 >gi|148642915|ref|YP_001273428.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii ATCC 35061] gi|226708656|sp|A5ULI2|TRUA_METS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148551932|gb|ABQ87060.1| tRNA pseudouridine synthase A, TruA [Methanobrevibacter smithii ATCC 35061] Length = 290 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 48/254 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + K ++ + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +N L D I IL + V F R++ +R+ YR Sbjct: 61 SLGNVISFQSEKE----VRVNEINNSL--PDDIQILAKAPVRFGFKPRYAEMRQ---YRY 111 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L LD + A+ G H+FT F + ++ RTID Sbjct: 112 V--------------LFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTT--RTIDDIK 155 Query: 177 V----------NSFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + F NL + + + SFL +R + V GK + LEK Sbjct: 156 ITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLS---LEK 212 Query: 221 ALQAQDRKECGPLA 234 + + E P A Sbjct: 213 VEELLNPAENDPRA 226 >gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM 70294] gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM 70294] Length = 446 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 50/229 (21%) Query: 14 GYFGWQRQKNGSSIQG------SIEKAIFLVTGEIVVVHG----------AGRTDSGVHA 57 Y GW NG +IQ ++E I + +V GRTD GV A Sbjct: 102 AYLGWNY--NGLAIQKEPTPLPTVEGVILEAMNKCRLVPSMNPQDYKFSRCGRTDKGVSA 159 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD------------KQFHARF 105 + QV + P + N +I + ILN + D K F ARF Sbjct: 160 MSQVISLKVRSNLTPEEQANSDNDSKEIQ-YVDILNQLLPDDIRVSAVCLRPPKDFDARF 218 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-- 163 S R Y Y + ++ LD E M AA++ G +DF F + Sbjct: 219 SCKHRHYKY-LFNKEG---------------LDLEKMEQAAKYYEGENDFRNFCKLDGSK 262 Query: 164 QASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 Q ++ RTI + + G+ ++ +FL Q+R + +L LVG G Sbjct: 263 QITNYKRTIISASIMHVSGDFYCFDLIGSAFLWHQVRCMMANLFLVGQG 311 >gi|239735631|gb|ACS12725.1| MIP10620p [Drosophila melanogaster] Length = 341 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 84/219 (38%), Gaps = 39/219 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVH 56 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 131 ILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGVS 190 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A RQV L E + +A NA L I + + V K F+A+ R+Y Y + Sbjct: 191 AARQVCSVKLPEE----LDLEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYTL 244 Query: 117 IT-----------------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 T R +P L+K + ++L R + R F R Sbjct: 245 PTVAFAPFEEKVDDVHDTFRISPELLQK-----VKETLKLYEGRRTSTTSPARKAFWILR 299 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 +S P+R H V NL +R+ R+ T+ Sbjct: 300 P--SASSCPLRAASHSGVPRTSNLSHLRLRVRALCCTRF 336 >gi|58271292|ref|XP_572802.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans JEC21] gi|57229061|gb|AAW45495.1| pseudouridylate synthase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 514 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 28/145 (19%) Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 K LN+ L S I IL S + F +RFS R Y Y TR P + E Sbjct: 214 KLLNSVLPPS--IRILAWSPIPASFDSRFSCTYRHYRYAFHTRPTPTSPE---------- 261 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-----------DVNSFGN-LI 184 LD E MR AQ L+G HD+ F C+ + +H G+ ++ Sbjct: 262 LDLELMRQGAQLLLGEHDYRNF----CKLDGSKQIENHTRGVLKAWFEGGKSQGVGDGMM 317 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVG 209 ++ +FL Q+R + L LVG Sbjct: 318 VFNLIGTAFLWHQVRHIIAVLFLVG 342 >gi|164659606|ref|XP_001730927.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966] gi|159104825|gb|EDP43713.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966] Length = 604 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 102/272 (37%), Gaps = 80/272 (29%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVVVHGA---------GR 50 +R+C Y+G Y G Q + ++E+ I+ L T +V + GR Sbjct: 84 LRFC----YDGGSYSGLAAQMGQMTPLPTVEETIWEALCTARLVDATKSMDDVDWSRCGR 139 Query: 51 TDSGVHALRQVAHF------------------------DLVREWVPVILCKALNAYLKIS 86 TD+GV A QV D E +P + LN L Sbjct: 140 TDAGVSAAGQVVALWIRSRCVDERPLRYKTGEAAIPLTDTSDEELPYV--ATLNRLLP-- 195 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-------LDC 139 TI I S V F ARF + R Y Y T AP L W P+S LD Sbjct: 196 PTIRIQAWSPVRPTFSARFDCVYRHYKY-FFTLGAPSTL----VWQ-PESLSQFSGRLDL 249 Query: 140 ENMRIAAQHLVGRHDF------------TTFR------SIH--CQASS--PIRTIDHFDV 177 + MR AA LVG HDF T FR SI C+ S PI D Sbjct: 250 DRMRDAAARLVGEHDFRNMCKVDASKQITNFRRRIDGASIDPVCRGWSDRPIPAPDPHST 309 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + ++ +R A FL+ Q+R + L +VG Sbjct: 310 DEPMYVLNLRGSA--FLYHQVRHIMAVLFMVG 339 >gi|126323933|ref|XP_001378494.1| PREDICTED: similar to Pseudouridine synthase 1 [Monodelphis domestica] Length = 435 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 68/277 (24%), Positives = 113/277 (40%), Gaps = 52/277 (18%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGA----------GR 50 + +++ Y+G GY G QR S + + +F + +G I HG R Sbjct: 101 KIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVFALVQSGCIPENHGEDMRKMAFQRCAR 160 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GV A Q+ + W+ + + +N++L I IL L V F+++ R Sbjct: 161 TDKGVSAAGQIVSLKV---WLIDNILEKINSHL--PSHIRILGLKRVTGSFNSKNRCDAR 215 Query: 111 SYLYRIIT-----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS----- 160 +Y Y + T + + E R L ++L+ N +A+ G H F F S Sbjct: 216 TYFYMLPTFAFAHKDHDVQDETYR--LSSETLEKVNQLLAS--YKGTHSFHNFTSQKGPK 271 Query: 161 ----------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 +HC+A +R F V I+V +SF+ QIR VG + + Sbjct: 272 EPSARRYIMEMHCEAPF-VREGMEFAV--------IKVKGQSFMMHQIRKMVGLVIAIMK 322 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G + +E++ + K P AP GL + V + Sbjct: 323 GYVPESVMERSW--GEEKVDIPKAPGLGLVLERVHFE 357 >gi|195346649|ref|XP_002039870.1| GM15659 [Drosophila sechellia] gi|194135219|gb|EDW56735.1| GM15659 [Drosophila sechellia] Length = 498 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 91/257 (35%), Gaps = 56/257 (21%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 107 YFGWDYQ--GFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVSAFCQVI 164 Query: 63 HFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 DL + P + C LN L + + + + + ARF + R Sbjct: 165 SIDLRSKHPPESQLDPTSLSSEIDYCGLLNRVLP-KNIQCVAWMPLRSSVYSARFDCVSR 223 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASS 167 SY Y PK LD MR A LV DF F +H ++ Sbjct: 224 SYRY-----------------FFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTN 266 Query: 168 PIRTI--------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 +R + D NS ++ + + A +FL QIR + L LVG K + Sbjct: 267 YMRNLQSARVEACDENHTNSGYDMYYLEIRANAFLWHQIRCIMAVLILVGQKKEKPAIIS 326 Query: 220 KALQAQDRKECGPLAPP 236 L + C P P Sbjct: 327 DLLNVESNP-CKPQYTP 342 >gi|302789057|ref|XP_002976297.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii] gi|300155927|gb|EFJ22557.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii] Length = 175 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 20/163 (12%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I +L V FHARFS + R Y Y + I L+ + M+ A+Q Sbjct: 16 IRVLGWCPVPPGFHARFSCLYREYKY----------------FFIDDGLNIDAMKQASQR 59 Query: 149 LVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLK 206 L+G HDF F + + R I FD+ + + V +FL Q+R L Sbjct: 60 LLGEHDFRNFCKMDADNIHNYTRQILAFDILPIEECLWVMHVRGNAFLWHQVRCMAAVLF 119 Query: 207 LVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 ++G G T T ++ L RK +AP L S + Sbjct: 120 MIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVLQSCAFQ 162 >gi|195429481|ref|XP_002062787.1| GK19511 [Drosophila willistoni] gi|194158872|gb|EDW73773.1| GK19511 [Drosophila willistoni] Length = 495 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 92/260 (35%), Gaps = 60/260 (23%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 115 YFGWDYQ--GFACQEDSNDTIESNLFRALTRTCLIESRANSNYHRCGRTDKEVSAFCQVI 172 Query: 63 HFDLVREW------------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 DL ++ + C LN L + + + + + ARF I R Sbjct: 173 SIDLRSKYPAESQLDPTSLATEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFDCIAR 231 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF----------- 158 SY Y PK LD E M+ A Q LV DF F Sbjct: 232 SYRY-----------------YFPKGDLDIEAMQEACQLLVNHADFRNFCKMDVHNGVTS 274 Query: 159 --RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 R++ P + V+ + + + + A +FL QIR + L LVG K S+ Sbjct: 275 FMRNLQAARVQPCEQTRNEKVSGYA-MFYLEIKANAFLWHQIRCIMAILLLVGQRKEKSS 333 Query: 217 DLEKALQAQDRKECGPLAPP 236 + L + C P P Sbjct: 334 IISDLLDV-NVNPCKPQYTP 352 >gi|242062118|ref|XP_002452348.1| hypothetical protein SORBIDRAFT_04g024105 [Sorghum bicolor] gi|241932179|gb|EES05324.1| hypothetical protein SORBIDRAFT_04g024105 [Sorghum bicolor] Length = 90 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ M+I Y+G+ + GWQ Q + +IQ +E A+ +T + + + GAGRTD+GVHA Sbjct: 29 KWRMVIAYDGTKFKGWQYQPSIPTIQYFLEDALICITKLDRKKLCLVGAGRTDTGVHAWG 88 Query: 60 QV 61 QV Sbjct: 89 QV 90 >gi|237844499|ref|XP_002371547.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49] gi|211969211|gb|EEB04407.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49] Length = 370 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 21/136 (15%) Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 LNA L I I+ + V F ARF R Y Y + + LD Sbjct: 22 LNAVL--PGDIRIVASAPVSPTFDARFDCTGRVYKY----------------FFHSEGLD 63 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFGNLI--EIRVVARSFLH 195 + M AAQ VG H+F F + Q +P RT+ F V S G+ + + RSFL Sbjct: 64 LQRMHQAAQRFVGEHNFRYFCKLDPRQYRNPRRTLTSFAVESAGDGVCAVATIAGRSFLW 123 Query: 196 TQIRSFVGSLKLVGDG 211 Q+R + +L VG G Sbjct: 124 HQVRFMMAALLKVGRG 139 >gi|224007503|ref|XP_002292711.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971573|gb|EED89907.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 162 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 20/129 (15%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + +I IL V +F ARFS +R+Y Y R +LD M Sbjct: 6 LPPSIRILGWCPVSPEFSARFSCGQRTYRYFFPRR----------------NLDLSAMAQ 49 Query: 145 AAQHLVGRHDFTTFRSIHCQASS---P-IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 Q+++GRHDF ++C+ + P I+ + +S ++ + +V ++FL QIR Sbjct: 50 GLQYMMGRHDFRNLCKMNCEQNEGEHPVIQPTEQSKPSSSRDMCHVEIVGQAFLWHQIRC 109 Query: 201 FVGSLKLVG 209 + L VG Sbjct: 110 IMSILFYVG 118 >gi|195552156|ref|XP_002076382.1| GD15210 [Drosophila simulans] gi|194202031|gb|EDX15607.1| GD15210 [Drosophila simulans] Length = 498 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 91/257 (35%), Gaps = 56/257 (21%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 107 YFGWDYQ--GFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVSAFCQVI 164 Query: 63 HFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 DL + P + C LN L + + + + + ARF + R Sbjct: 165 SIDLRSKHPPESQLDPTSLSSEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFDCVSR 223 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASS 167 SY Y PK LD MR A LV DF F +H ++ Sbjct: 224 SYRY-----------------YFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTN 266 Query: 168 PIRTI--------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 +R + D NS ++ + + A +FL QIR + L LVG K + Sbjct: 267 YMRNLQSARVEACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKEKPAVIS 326 Query: 220 KALQAQDRKECGPLAPP 236 L + C P P Sbjct: 327 DLLDVESNP-CKPQYTP 342 >gi|86134196|ref|ZP_01052778.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] gi|85821059|gb|EAQ42206.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 37/259 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR--- 59 Y + + + G + GWQ+Q N ++ ++K++ V ++ GAGRTD+ V A R Sbjct: 7 YLISLGFLGFRFSGWQKQTNAKTLHDIVDKSLSFVLKDVDYKTIGAGRTDAKVSANRYLF 66 Query: 60 -----QVAHFDLVREWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARFS--AIRR 110 +V D+ + L AY +++ +I+N + K++H FS A+ Sbjct: 67 QLFTNEVLQQDVFLNELNSNLPADFKAYTVSEVATKFNIINAPKI-KEYHYYFSFGAVNH 125 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 + AP + + L+ + M+ A G H F + + + R Sbjct: 126 PF-------AAPFIVNE------ESELNIKLMKKGASLFEGEHYFHKYCTKPSAKTEFKR 172 Query: 171 TIDHFDVNSFGNLIE---------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 TI+ + L ++V + FL QIR + +L +G G + +E + Sbjct: 173 TIESCSIIENSILTASFFPQKSYVLKVRGKGFLRYQIRLMMATLFELGKGNLSLQYIEDS 232 Query: 222 LQA-QDRKECGPLAPPEGL 239 L+ DR+ +AP GL Sbjct: 233 LKEDNDRQFLRTIAPGSGL 251 >gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 257 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 100/260 (38%), Gaps = 59/260 (22%) Query: 15 YFGWQRQKNGSSIQG--------SIEKAIFLVTGEIVVVHGA------------GRTDSG 54 Y GW +G + QG ++E+A+F + +V A GRTD G Sbjct: 19 YLGWD--YHGFASQGAANAAAPRTVEQALFDALAKTKLVESARDVFKVADYARCGRTDRG 76 Query: 55 VHALRQVAHF----------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 V L Q+ D ++V +L +AL + + L + VD + +AR Sbjct: 77 VSGLGQIVTLRARSNGAEGVDEELDYV-ALLNRAL------PNDVRALGWAPVDDELNAR 129 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 F R Y Y EK LD MR AA+ G HDF F + + Sbjct: 130 FDCEWRQYKY---------FFEK------TNGLDLGAMREAARAFEGVHDFRNFCRMDAE 174 Query: 165 -ASSPIRTIDHFDVNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 S R + + G L+ I V +FL Q+R L +VG G + T + + Sbjct: 175 NVKSFTRNVLECTIEESHDGKLMYINVRGTAFLWHQVRCMASVLFMVGLGHESPTVVTEL 234 Query: 222 LQAQ--DRKECGPLAPPEGL 239 L + RK P+AP L Sbjct: 235 LDLERTPRKPQYPMAPEHAL 254 >gi|254168636|ref|ZP_04875479.1| tRNA pseudouridine synthase family [Aciduliprofundum boonei T469] gi|197622470|gb|EDY35042.1| tRNA pseudouridine synthase family [Aciduliprofundum boonei T469] Length = 225 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 84/208 (40%), Gaps = 43/208 (20%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDK 99 + A RTD GV AL V W+ L LNA LK S NL I Sbjct: 12 LKSASRTDRGVSALGNVI-------WIKTDIDGKELIGRLNANLKHIYFHSFANLDI--- 61 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 + R++ IR Y Y + L+ G+ D + ++ AA G HDF F Sbjct: 62 --NPRYARIR-WYRYHL--------LDMGQ--------DMDRLKEAAMIFQGEHDFRNFT 102 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + I+ ID VN G++I I R++L IR V +++ GK ++ Sbjct: 103 RVRKNTVIEIKKID---VNKRGSIITIDFYGRNYLWNLIRRIVAAMEAYSLGKEFGQEIF 159 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 RK G +APPE L ++Y Sbjct: 160 TI-----RKNFG-IAPPEPLILMDIQYD 181 >gi|296775668|gb|ADH42945.1| hypothetical protein [uncultured SAR11 cluster alpha proteobacterium H17925_23J24] Length = 52 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 26/40 (65%) Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 VGSLK +G+GKW +D +KA ++ R C P AP GL F Sbjct: 2 VGSLKYLGEGKWKLSDFKKAFSSKKRTMCAPPAPAYGLLF 41 >gi|195488597|ref|XP_002092382.1| GE11697 [Drosophila yakuba] gi|194178483|gb|EDW92094.1| GE11697 [Drosophila yakuba] Length = 497 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 91/257 (35%), Gaps = 56/257 (21%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 106 YFGWDYQ--GFACQEDSNDTIEANLFRALTRTCLIESRATSNYHRCGRTDKEVSAFCQVI 163 Query: 63 HFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 DL + P + C LN L + + + + + ARF + R Sbjct: 164 SIDLRSKHPPESQLDPTAISTEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFDCVSR 222 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASS 167 SY Y PK LD M A LV DF F +H ++ Sbjct: 223 SYRY-----------------YFPKGDLDIAAMSKACDLLVRHADFRNFCKMDVHNGVTN 265 Query: 168 PIRTI--------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 +R + D NS ++ + + A +FL QIR + L LVG K + Sbjct: 266 YMRNLQSARVEACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPAVIS 325 Query: 220 KALQAQDRKECGPLAPP 236 K L + C P P Sbjct: 326 KLLDVESNP-CKPQYTP 341 >gi|222445148|ref|ZP_03607663.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii DSM 2375] gi|222434713|gb|EEE41878.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii DSM 2375] Length = 288 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 106/269 (39%), Gaps = 47/269 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + K ++ + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +N L D I IL + V F R++ +R+ YR Sbjct: 61 SLGNVISFQSEKE----VRVNEINNSL--PDDIQILAKAPVRFGFKPRYAEMRQ---YRY 111 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L LD + A+ G H+FT F + ++ RTID Sbjct: 112 V--------------LFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTT--RTIDDIK 155 Query: 177 V----------NSFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + F NL + + + SFL +R + V GK + +E+ Sbjct: 156 ITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEE 215 Query: 221 ALQA--QDRKECGPLAPPEGLYFDSVEYS 247 L D + + P+ L ++Y Sbjct: 216 LLNPAENDLRANIKVLDPDYLILMDIKYD 244 >gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri] gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri] Length = 813 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 86/203 (42%), Gaps = 31/203 (15%) Query: 49 GRTDSGVHALRQVAHFDL-------VREWVPVILCKALNAYLKISDTISILNLSIVDKQF 101 GRTD GV L Q+ + RE + + LN L SD + L + VD++ Sbjct: 512 GRTDRGVSGLGQIVTLQVRSNGASDPREELDYV--GLLNRALP-SD-VRALGWAPVDEEL 567 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 +ARF R Y Y EK A LD E M AA+ G HDF F + Sbjct: 568 NARFDCKWRQYKY---------FFEKTTA------LDLEAMGEAARAFEGVHDFRNFCRM 612 Query: 162 HCQ-ASSPIRTIDHFDVNSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + S R + + G+ L+ I V +FL Q+R+ L +VG G + + Sbjct: 613 DAENVKSFTRRVLECTIEEAGDGKLMYINVRGTAFLWHQVRNMASVLFMVGLGHEPPSVV 672 Query: 219 EKALQAQ--DRKECGPLAPPEGL 239 E+ L + RK P+AP E L Sbjct: 673 ERLLDLERTPRKPQYPMAPEESL 695 >gi|66803188|ref|XP_635437.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] gi|60463746|gb|EAL61924.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] Length = 596 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 110/295 (37%), Gaps = 69/295 (23%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 + +I+ Y+G+ Y G Q+ +++ +E A+F G + V RTD Sbjct: 141 KVAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCARTDK 200 Query: 54 GVHALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GV A+R V + E + + L K L I++ ++ V+ FHA+ + Sbjct: 201 GVSAIRNVVSLKMEMGPPDFEGMKIALNKEL------PKDITVFHIMRVNNSFHAKNAVD 254 Query: 109 RRSYLYRIITRQAPLALEKGRAWLI-------------PKSLDCENMRIAAQHL---VGR 152 RSY+Y T K ++ P + + I + L +G Sbjct: 255 ARSYIYVTPTHVFEPKFSKKNKSIVEEAANGGENNTQPPWKFTSDTLSILNKVLSFYLGN 314 Query: 153 H------------DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 H D + FR IH S ++ + ++ I VV SF+ QIR Sbjct: 315 HRFHNYTSRKESNDVSVFRKIHSFVCSEPFVLEGVE------MVSINVVGESFMLHQIRK 368 Query: 201 FVGSL-KLVGDGKWTSTDLEKALQAQDRKECG------------PLAPPEGLYFD 242 +G L + G + D E QA D+ + P+AP GL D Sbjct: 369 MIGCLISFIRKGMF--EDCETRDQAFDQIKAYINSTFEHTPLNLPMAPGAGLLLD 421 >gi|301605366|ref|XP_002932295.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana) tropicalis] Length = 394 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 37/269 (13%) Query: 3 RYCMIIEYNGSGYFGWQ---RQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGR 50 ++ +++ Y G GY+G Q + N +I+ ++ A+ F + + + R Sbjct: 70 KFAIMLAYCGRGYYGMQMDLTRPNFPTIESALISALIQARCIPEMFYMQMKQLKFQRCAR 129 Query: 51 TDSGVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GV AL Q+ L+ PV + +N++L I I+++ V K F + + Sbjct: 130 TDKGVSALSQLVSVRLLPSCSNPV---EKINSHL--PPEILIIDMKRVTKGFCPKKMCDK 184 Query: 110 RSYLYRIITRQ----APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-Q 164 RSY Y + T AP + + +P+ D N+ G H+F F S + Sbjct: 185 RSYSYMVPTFALSCCAPSVPDSN--FRMPRE-DFHNINNLLSFYKGTHNFHNFTSRKAFE 241 Query: 165 ASSPIRTIDHFDVNSFGNLI-------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 S R + DV+ + +I + +SF+ QIR VG + + G + Sbjct: 242 DPSSFRHM--LDVSCSEPFVFHGTEFAQIHITGQSFMLYQIRKMVGLIIAIAQGIVPADF 299 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L + +Q + K P AP GL + V + Sbjct: 300 LPQCMQRE--KINIPPAPGLGLVLERVHF 326 >gi|224011898|ref|XP_002294602.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969622|gb|EED87962.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 394 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 44/202 (21%) Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIIT------RQAPLALEKGRAWLIPKSLDCEN 141 +IS +++ V F AR+SA + Y+Y I + P + AWLI +SLD E Sbjct: 190 SISAFSVTPVPLTFDARYSAKWKRYIYYICSGINNGETVQPFVWSR-YAWLIRESLDYEG 248 Query: 142 MRIAAQHLVG-RHDF------------TTFRSIHCQASS-PIR-----TIDHFDVNSFGN 182 M AA+ L G H++ T R++H + P++ T+ + + N Sbjct: 249 MVDAAKMLSGEEHNYEWMCVIQEGELRNTRRTVHLNIETVPVKVNGNDTMVPYFLQQNEN 308 Query: 183 LIEIRVVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-------QAQDRKECGPL 233 + +VVA S FL+ +R VG L +G + T L++ + A D +E + Sbjct: 309 SVVYKVVATSDFFLYKMVRRIVGLLVAIGKKQADLTTLKRCIGVYDKYGAASDDREGERM 368 Query: 234 ---------APPEGLYFDSVEY 246 AP +GL D +EY Sbjct: 369 KIPVKLLETAPAKGLCLDHIEY 390 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + ++G+ Y G+Q Q ++IQ IE + L+ + V V G GRTD+GVHA V Sbjct: 39 RFAIRLSFDGTTYSGFQSQPYQNTIQDQIEHRLRNLLKRDTVRVIGWGRTDAGVHAKGAV 98 Query: 62 AHFDL 66 DL Sbjct: 99 VTVDL 103 >gi|256087148|ref|XP_002579738.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665217|emb|CAZ35977.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 413 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 108/267 (40%), Gaps = 38/267 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-------LVTGEIVVVH--GAGRTDSGVH 56 +++ Y+G GY+G QR +I+G + KA+F L + E VH A +TD V Sbjct: 42 ILLMYSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVS 101 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV L + L LN L + I +L++ V + F + S R Y Y + Sbjct: 102 ALGQVCSMQLKED---TDLLSKLNNSLP--ENIRVLDIIRVTRGFSSYSSCTHRIYDYLL 156 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV----------GRHDFTTFRS----IH 162 T AL + L + C R+ + + G H+F F S Sbjct: 157 PT----FALSPATSSLNDST--CWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTD 210 Query: 163 CQASSPIRTIDHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S I + + G IR+ +SF+ QIR +G V G T + Sbjct: 211 RSCSRYIISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDI 270 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ R + P AP GL + V++S Sbjct: 271 VF-SKARIDI-PKAPGLGLMLNQVDFS 295 >gi|256087146|ref|XP_002579737.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665216|emb|CAZ35976.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 428 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 108/267 (40%), Gaps = 38/267 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-------LVTGEIVVVH--GAGRTDSGVH 56 +++ Y+G GY+G QR +I+G + KA+F L + E VH A +TD V Sbjct: 57 ILLMYSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVS 116 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV L + L LN L + I +L++ V + F + S R Y Y + Sbjct: 117 ALGQVCSMQLKED---TDLLSKLNNSLP--ENIRVLDIIRVTRGFSSYSSCTHRIYDYLL 171 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV----------GRHDFTTFRS----IH 162 T AL + L + C R+ + + G H+F F S Sbjct: 172 PT----FALSPATSSLNDST--CWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTD 225 Query: 163 CQASSPIRTIDHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S I + + G IR+ +SF+ QIR +G V G T + Sbjct: 226 RSCSRYIISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDI 285 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ R + P AP GL + V++S Sbjct: 286 VF-SKARIDI-PKAPGLGLMLNQVDFS 310 >gi|224011902|ref|XP_002294604.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969624|gb|EED87964.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 394 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 44/202 (21%) Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIIT------RQAPLALEKGRAWLIPKSLDCEN 141 +IS +++ V F AR+SA + Y+Y I + P + AWLI +SLD E Sbjct: 190 SISAFSVTPVPLTFDARYSAKWKRYIYYICSGINNGETVQPFVWSR-YAWLIRESLDYEG 248 Query: 142 MRIAAQHLVG-RHDF------------TTFRSIHCQASS-PIR-----TIDHFDVNSFGN 182 M AA+ L G H++ T R++H + P++ T+ + + N Sbjct: 249 MVDAAKMLSGEEHNYEWMCVIQEGELRNTRRTVHLNIETVPVKVNGNDTMVPYFLQQNEN 308 Query: 183 LIEIRVVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG--------- 231 + +VVA S FL+ +R VG L +G + T L++ + D+ Sbjct: 309 SVVYKVVATSDFFLYKMVRRIVGLLVAIGKKQADLTTLKRCIGVYDKYGAASDDRDGERM 368 Query: 232 --PL-----APPEGLYFDSVEY 246 P+ AP +GL D +EY Sbjct: 369 KIPVKLLETAPAKGLCLDHIEY 390 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + ++G+ Y G+Q Q ++IQ IE + L+ + V V G GRTD+GVHA V Sbjct: 39 RFAIRLSFDGTTYSGFQSQPYQNTIQDQIEHRLRNLLKRDTVRVIGWGRTDAGVHAKGAV 98 Query: 62 AHFDL 66 DL Sbjct: 99 VTVDL 103 >gi|325115883|emb|CBZ51437.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool] Length = 475 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 32/211 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + + Y+GS Y G Q S+++ ++E A+F + ++ + + Sbjct: 89 FLLKLAYDGSAYSGIAYQGENSAVR-TVEGALFDALEKTCLIRDRNAWQPAKRLFPE-EN 146 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 +D LNA L I I+ + V F ARF R Y Y Sbjct: 147 YDYA---------AVLNAVL--PGDIRIVASAPVPPGFDARFDCTGRVYKY--------- 186 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFGN 182 + + LD M AAQ VG H+F F + Q +P RT+ F + G+ Sbjct: 187 -------FFHSEGLDLPRMHRAAQRFVGEHNFRYFCKLDPRQYRNPRRTLTSFAIEPVGD 239 Query: 183 --LIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 + RSFL Q+R + +L VG G Sbjct: 240 SACAVATIAGRSFLWHQVRFMMAALLKVGRG 270 >gi|3047089|gb|AAC13601.1| contains similarity to pseudouridylate synthases [Arabidopsis thaliana] gi|10178103|dbj|BAB11490.1| unnamed protein product [Arabidopsis thaliana] Length = 364 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 22/88 (25%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FL--------------VTGEIVVV 45 + + +++ YNG+ + GWQ+Q + ++QG +EK++ F+ + G ++V Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLV- 151 Query: 46 HGAGRTDSGVHALRQVA---HFDLVREW 70 AGRTD GV AL QV+ H + +W Sbjct: 152 --AGRTDKGVSALNQVSRSFHPNFSAKW 177 >gi|219116871|ref|XP_002179230.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409121|gb|EEC49053.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 63 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + Y GS + GWQRQ S+Q +E A+ G V V AGRTD+GVHAL Q+ Sbjct: 3 LAYFGSDFCGWQRQAQSKKPSVQKIVEDAMQDALGYAVNVRVAGRTDAGVHALGQIG 59 >gi|317498141|ref|ZP_07956443.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316894618|gb|EFV16798.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 50 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 30/49 (61%) Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R G+L VG GK D+ KAL++ R + G APP+GL+ SVEY Sbjct: 2 VRILTGTLVEVGYGKIKPEDITKALESTKRSDAGITAPPQGLFLVSVEY 50 >gi|302808177|ref|XP_002985783.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii] gi|300146290|gb|EFJ12960.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii] Length = 372 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 20/162 (12%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I +L V FHARFS + R Y Y + I L+ + M+ A+Q Sbjct: 194 IRVLGWCPVPPGFHARFSCLYREYKY----------------FFIDDGLNIDAMKQASQR 237 Query: 149 LVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLK 206 L+G HDF F + + R I FD+ + + V +FL Q+R L Sbjct: 238 LLGEHDFRNFCKMDADNIHNYTRQILAFDILPIEECLWVMHVRGNAFLWHQVRCMAAVLF 297 Query: 207 LVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 ++G G T T ++ L RK +AP L S + Sbjct: 298 MIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVLQSCAF 339 >gi|321261750|ref|XP_003195594.1| pseudouridylate synthase [Cryptococcus gattii WM276] gi|317462068|gb|ADV23807.1| pseudouridylate synthase, putative [Cryptococcus gattii WM276] Length = 511 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 74/196 (37%), Gaps = 39/196 (19%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI 85 + + +EK + V E G + V RQ + F K LN+ L Sbjct: 171 AAEPEVEKPV--VVQEDGEAKGQEKKSKIVQPTRQPSEFPY---------PKLLNSVLPP 219 Query: 86 SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIA 145 S I +L S + F +RFS R Y Y TR P + E LD E M Sbjct: 220 S--IRVLAWSPIPSSFDSRFSCTYRHYRYAFHTRPTPTSPE----------LDLELMSQG 267 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHF-----------DVNSFGN-LIEIRVVARSF 193 AQ L+G HD+ F C+ + +H + G ++ ++ +F Sbjct: 268 AQLLLGEHDYRNF----CKLDGSKQIENHTRGVLKAWFEGGESQGVGEGMMVFNLIGTAF 323 Query: 194 LHTQIRSFVGSLKLVG 209 L Q+R V L L+G Sbjct: 324 LWHQVRHIVAVLFLIG 339 >gi|149634330|ref|XP_001510884.1| PREDICTED: similar to Pseudouridine synthase 1 [Ornithorhynchus anatinus] Length = 469 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 36/269 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AG 49 + +++ Y+G GY+G QR GSS +IE + + +G I HG Sbjct: 101 KIVLLMAYSGKGYYGMQRHV-GSSQFKTIEDDLVSALVQSGCIPENHGDDMKKMSFQRCA 159 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A Q+ + W+ + + +N++L I IL L V F+++ + Sbjct: 160 RTDKGVSAAGQIVSLKV---WLIDNILEKINSHL--PSQIRILGLKRVTGGFNSKNNCTA 214 Query: 110 RSYLYRIIT-----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-C 163 R+Y Y + T + E R L P+ L+ N +A G H F F S Sbjct: 215 RTYFYMLPTLAFAHKDHDPQDETYR--LSPEVLERVNRLLAC--YKGTHHFHNFTSQKGP 270 Query: 164 QASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + +S +R I + V I+V +SF+ QIR +G + + G + + Sbjct: 271 KDASGMRYIMEMYCEEPFVREGMEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYADQSVM 330 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 E++ + K P AP GL + V + Sbjct: 331 ERSWGEE--KVDIPKAPGLGLVLERVHFE 357 >gi|157115880|ref|XP_001658327.1| pseudouridylate synthase [Aedes aegypti] gi|108876737|gb|EAT40962.1| pseudouridylate synthase [Aedes aegypti] Length = 455 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 35/268 (13%) Query: 3 RYCMIIE-YNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 R C+I+ Y+G Y G QR +I+ + A+ + + A RTD Sbjct: 116 RKCVIVMGYSGVNYLGMQRNPGTKTIEEELLVAMLKHNWISEEAFNQPQQIQFQRAARTD 175 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV L + ALN L + I + + V K F+++ + R+Y Sbjct: 176 KGVSAATQVVSIKLPDN----VDIDALNKDL--PEQIRVFAVKRVTKGFNSKSNCDARTY 229 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV------GRHDFTTFRSIHCQAS 166 Y + T AL + + + + E +++ + L H+FT+ + +S Sbjct: 230 TYTLPT--MAFALHEDKVDMESYRVPEERLKVVEETLKLFEGTKNFHNFTSRKEFIDPSS 287 Query: 167 SPIRTIDHFDVNS----FGNLIE---IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 R I F+ + G+ +E +++ +SF+ QIR VG V G + Sbjct: 288 K--RFIMSFECEAPFVPEGSTVEFATLKIKGQSFMLHQIRKMVGLTLAVVRGLTPQETIV 345 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 KA + Q + P AP GL + + Y Sbjct: 346 KAFEEQ--RYGVPTAPGLGLVLNRIHYE 371 >gi|294621110|ref|ZP_06700301.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291599346|gb|EFF30372.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] Length = 73 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%) Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 FL+ IR VG+L +G+G+ + + +DR GP A PEGLY V+Y Sbjct: 19 FLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVKY 72 >gi|17565126|ref|NP_507242.1| PseudoUridine Synthase family member (pus-1) [Caenorhabditis elegans] gi|3880517|emb|CAA16518.1| C. elegans protein W06H3.2a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 415 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 105/270 (38%), Gaps = 33/270 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQG----SIEKAIFLVTGEI-----VVVHGAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ ++E A ++ T + A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVREWVPVILCKA--LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L R+ A LN L I + + FH + R+ Sbjct: 94 AVSAARQMCGMQLPRDDAKYQAEGAGILNNILPAD--IRVFGMRRTTNFFHPQKQCDHRT 151 Query: 112 YLYRI--ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--------- 160 Y Y P L L P++L N ++ +G H+F + + Sbjct: 152 YSYTCPSFVFAKPTELTNSSFRLSPETLAEVNSILSI--YLGTHNFFNYTAKRAYDDMSS 209 Query: 161 ----IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 I + P D F ++I + +SF+ QIR VG + V + Sbjct: 210 NRYIISFECKEPFLFRDDFRKEDV-EFVQIVIKGQSFVLHQIRKMVGMVITVIRELHLKS 268 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++++ + Q R + P+AP GL + Y Sbjct: 269 SIQRSFEGQ-RMDI-PMAPGLGLLLERTHY 296 >gi|194882124|ref|XP_001975163.1| GG20714 [Drosophila erecta] gi|190658350|gb|EDV55563.1| GG20714 [Drosophila erecta] Length = 497 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 92/257 (35%), Gaps = 56/257 (21%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 106 YFGWDYQ--GFACQEDSNDTIESNLFRALSRTCLIDSRANSNYHRCGRTDKEVSAFCQVI 163 Query: 63 HFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 DL + P + C LN L + + + + + ARF + R Sbjct: 164 SIDLRSKHSPEFQLDPTALSTEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFDCVSR 222 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASS 167 SY Y PK LD M A L DF F +H ++ Sbjct: 223 SYRY-----------------YFPKGDLDIGAMSQACDLLERHADFRNFCKMDVHNGVTN 265 Query: 168 PIRTI--------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 +R + D NS ++ + + A +FL QIR + L LVG K + T + Sbjct: 266 YMRNLQSARVVACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKESPTVIS 325 Query: 220 KALQAQDRKECGPLAPP 236 + L + C P P Sbjct: 326 ELLDVESNP-CKPQYSP 341 >gi|302810046|ref|XP_002986715.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii] gi|300145603|gb|EFJ12278.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii] Length = 318 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 102/264 (38%), Gaps = 29/264 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGR 50 M + + + Y G+GY G QR ++I+G +E+A LV + +G A R Sbjct: 1 MEKAALFVVYCGAGYKGMQRNPGAATIEGVLEEA--LVRAGAIGSNGCSRNWLDWKRAAR 58 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD V AL QV R ++ L N +L +I +L V F A+ R Sbjct: 59 TDKEVSALGQVVS---ARLYLTPDLVHRTNEFL--PGSIRLLGFKRVPDDFSAKKMCASR 113 Query: 111 SYLYRI-ITRQAPLALEKGRAWLIPKSLDCENM-RIAAQHLVGRHDFTTFR-SIHCQASS 167 Y Y + I P + + D E +I + L H F F + Sbjct: 114 RYEYVLPIFAFDPRTGDDLEEEFL---FDFERFNQILGRFLGTDHSFHNFSWRVRPGDRE 170 Query: 168 PIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 RT+ F + I V+ARSF+ QIR VG V T + +AL Sbjct: 171 ARRTVVEFRAADKIWIGGSEFVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINRAL 230 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 +++ P AP GL D Y Sbjct: 231 RSE-VDVIVPTAPEVGLLLDESFY 253 >gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 548 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 70/180 (38%), Gaps = 21/180 (11%) Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN-LSIVDKQFHARFS 106 AGRTD GV A QV + + + I LN L + I +L F ARFS Sbjct: 192 AGRTDKGVSAFGQVIGLRVRTDEMNYI--NVLNRVL--PEDIRVLAWCPNPPPGFDARFS 247 Query: 107 AIRRSYLYRIITRQA--PLALEKG-----------RAWLIPKSLDCENMRIAAQHLVGRH 153 R Y Y T A P G RA LD E MR AA+H G H Sbjct: 248 CRERRYKY-FFTNPAFSPTPGSIGFQNRAQNGNGPRAEFREGWLDIEAMREAAKHFEGSH 306 Query: 154 DFTTFRSIHC--QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 DF F + Q + R I H S + + +FL Q+R V L LVG G Sbjct: 307 DFRNFCKLDTNKQIDNFERIIHHSISQSIPQVYSFNLHGSAFLWHQVRHMVAILFLVGQG 366 >gi|256087150|ref|XP_002579739.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665218|emb|CAZ35978.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 369 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 107/263 (40%), Gaps = 38/263 (14%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIF-------LVTGEIVVVH--GAGRTDSGVHALRQ 60 Y+G GY+G QR +I+G + KA+F L + E VH A +TD V AL Q Sbjct: 2 YSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVSALGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V L + +L K N+ + + I +L++ V + F + S R Y Y + T Sbjct: 62 VCSMQLKED--TDLLSKLNNS---LPENIRVLDIIRVTRGFSSYSSCTHRIYDYLLPT-- 114 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLV----------GRHDFTTFRS----IHCQAS 166 AL + L + C R+ + + G H+F F S S Sbjct: 115 --FALSPATSSLNDST--CWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCS 170 Query: 167 SPIRTIDHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I + + G IR+ +SF+ QIR +G V G T + + Sbjct: 171 RYIISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDIVF-S 229 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + R + P AP GL + V++S Sbjct: 230 KARIDI-PKAPGLGLMLNQVDFS 251 >gi|260655352|ref|ZP_05860840.1| tRNA pseudouridine synthase A [Jonquetella anthropi E3_33 E1] gi|260629800|gb|EEX47994.1| tRNA pseudouridine synthase A [Jonquetella anthropi E3_33 E1] Length = 113 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 42/98 (42%) Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 L GRHDF+ F +P R + G L+ + V +FL +R +G+L V Sbjct: 11 LEGRHDFSAFCRQSEVPENPWRRLYSVRFRRRGPLVVVAVCGDAFLTNMVRIMMGNLDDV 70 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GK + L L+ R APP GL F V Y Sbjct: 71 SRGKRSLDWLAGLLEGGRRSSSAMTAPPSGLTFWRVGY 108 >gi|225463117|ref|XP_002264487.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1520 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 27/172 (15%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + I ++ V FHARFS + R Y Y + +L+ M Sbjct: 1279 LPKDIRVMGWCPVPIGFHARFSCLSREYKY----------------FFWRGNLNILAMES 1322 Query: 145 AAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQ 197 A + VG HDF F + + R I F++ N L I++ +FL Q Sbjct: 1323 AGKKFVGEHDFRNFCKMDAVNVHNYRRHIISFEIAPTNNRYDGNQLWAIKIKGSAFLWHQ 1382 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 +R V L ++G G S D+ AL +R P +AP L +S E+ Sbjct: 1383 VRCMVAVLFMIGQGL-ESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEF 1433 >gi|41615123|ref|NP_963621.1| hypothetical protein NEQ333 [Nanoarchaeum equitans Kin4-M] gi|42559722|sp|P60354|TRUA_NANEQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|40068847|gb|AAR39182.1| NEQ333 [Nanoarchaeum equitans Kin4-M] Length = 209 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 13/115 (11%) Query: 99 KQFHARFSAIRR-SYLYR---IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 K F + AI + SYL++ II R+ + + KG +P +LD M+ AA+H +G+ D Sbjct: 67 KYFLPKDKAIEQISYLHKVGNIIVRKTKIKV-KG----LP-NLDL--MKEAAKHFIGKKD 118 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 FT F +I +A +P+ TI FD+ + +V FL+ +R + + VG Sbjct: 119 FTNF-TIEREAKNPLCTIIKFDIEERKDYYVFSIVGDRFLYHMVRKIISFIVSVG 172 >gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis] gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis] Length = 438 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 105/275 (38%), Gaps = 55/275 (20%) Query: 8 IEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHALRQV 61 + Y G ++G+ + S I ++E+ L+ + + + GRTD GV A+ QV Sbjct: 108 VMYFGQRFYGFSSEGQMDPTVESEIFKALERTRLLIGDKKEIQYSRCGRTDKGVSAVGQV 167 Query: 62 AHFDLVREWVPVI---------------------LCKALNAYLKISDTISILNLSIVDKQ 100 L+R V I + LN L + I I+ V Sbjct: 168 IAL-LLRSKVKDIDEIGKVFGETASQKHSEGEIDYVRVLNRVL--PNDIRIIGWCPVPND 224 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARFS + R Y Y + +L+ M A + +G HDF F Sbjct: 225 FSARFSCLSREYKY----------------FFRGDNLNLLAMESAGKKFIGEHDFRNFCK 268 Query: 161 IHC-QASSPIRTIDHFDVNSF-----GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + + R I F+++ GN L I++ +FL Q+R V L ++G G Sbjct: 269 MDAMNVHNYRRNITSFEISPCHERYEGNQLFAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 328 Query: 214 TSTDLEKALQA--QDRKECGPLAPPEGLYFDSVEY 246 + ++ L RK P+AP L S ++ Sbjct: 329 SPDVIDVLLDTVRTPRKPQYPMAPEIPLVLHSCDF 363 >gi|324501041|gb|ADY40469.1| tRNA pseudouridine synthase tag-124 [Ascaris suum] gi|324504466|gb|ADY41930.1| tRNA pseudouridine synthase tag-124 [Ascaris suum] Length = 388 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 106/291 (36%), Gaps = 80/291 (27%) Query: 15 YFGW------QRQKNGSSIQGSIEKAIF----LVTGEIVVVHGAGRTDSGVHALRQVAHF 64 Y+GW Q+Q ++++ I+ A+ + + +GRTD GV A RQ+A Sbjct: 4 YYGWEYEGLVQQQDTVNTVEEVIKDALLRTRLIESWNKCEWIRSGRTDKGVSAFRQIASL 63 Query: 65 DLVREWVP-----------------------VILCKALNAYLKISDTISILNLSIVDKQF 101 +VR P ++ K LN L I +L + V F Sbjct: 64 -IVRSSDPEGEHVFWPENADPHSRITPPHSELMYLKMLNGVL--PKNIRVLAWAPVALDF 120 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 +ARFS +R Y Y A +G D E +R A L+G HDF I Sbjct: 121 NARFSCTKRVYKY---------AFPRG-------DFDLEAIRKACSLLIGEHDFRNICRI 164 Query: 162 HCQAS----SPIRTIDHFDVN--------------------SFGNLIEIRVVARSFLHTQ 197 + S +R + FD + S +L+E +++ FL Q Sbjct: 165 DLNKARVEMSYVRMV--FDASISVVLESGERVEVSSEPEPHSPYSLVEFTMISSGFLWHQ 222 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 IR + + +G G + + L + RK LAP L Y Sbjct: 223 IRCVMALMYEIGKGNEKPEVISELLDIEKTPRKPAYGLAPSSPLCLFDCSY 273 >gi|76638649|ref|XP_593895.2| PREDICTED: pseudouridylate synthase 1 isoform 1 [Bos taurus] gi|297484682|ref|XP_002694500.1| PREDICTED: pseudouridylate synthase 1 [Bos taurus] gi|296478661|gb|DAA20776.1| pseudouridylate synthase 1 [Bos taurus] Length = 433 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 114/272 (41%), Gaps = 50/272 (18%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 94 LLMAYSGKGYHGMQRNV-GSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 152 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N++L I IL L V F+++ R+Y Sbjct: 153 KGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDARTY 207 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR--------------HDFTTF 158 +Y + T A A S D E R++A+ L GR H+FT+ Sbjct: 208 VYMLPT----FAF----AHKDHDSQD-ETYRLSAETL-GRVNRLLACYKGTHNFHNFTSQ 257 Query: 159 RSIHCQASSPIRTIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + H + S+ +D F F I+V +SF+ QIR VG + + G Sbjct: 258 KGPH-EPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAP 316 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LE+ + K P AP GL + V + Sbjct: 317 ESVLERCW--GEAKVDVPKAPGLGLVLERVHF 346 >gi|114647862|ref|XP_001139560.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan troglodytes] Length = 427 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 109/270 (40%), Gaps = 46/270 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 88 LLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 146 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N++L I IL L V F+++ R+Y Sbjct: 147 KGVSAAGQVVSLKV---WLIEDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDARTY 201 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRSIH 162 Y + T A + + E R++A+ L G H+F F S Sbjct: 202 CYLLPT----FAFAHKD-----RDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQK 252 Query: 163 -CQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q S R I + V IRV +SF+ QIR VG + + G + Sbjct: 253 GPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPES 312 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LE++ + K P AP GL + V + Sbjct: 313 VLERSWGTE--KVDVPKAPGLGLVLERVHF 340 >gi|242008043|ref|XP_002424822.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis] gi|212508372|gb|EEB12084.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis] Length = 430 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 98/260 (37%), Gaps = 56/260 (21%) Query: 15 YFGWQR-----QKNGSS-----IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 YFGW Q+N S+ + +++K + E GRTD GV A QV Sbjct: 70 YFGWDTSGFVIQENTSNTIEQFMFDALKKCCLIENIETSNYQKCGRTDKGVSAFSQVISL 129 Query: 65 DLVREWVP----------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 D VR + + C LN L I + + V +R R+Y Y Sbjct: 130 D-VRSKLENPNHENAEQEIEYCSMLNRLL--PPFIKCYSWAHVGSDVGSRHDCSERTYKY 186 Query: 115 RIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSPIRT 171 PK +LD MR AA+ L+G HDF + ++ R Sbjct: 187 -----------------YFPKGNLDINLMREAAKSLLGSHDFRNLCKMDVANGITNFNRN 229 Query: 172 IDHFDVNSFGNLIE---------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 I + D+ L+E + ++ FL+ QIRS + L LVG K S D+ L Sbjct: 230 IIYADIKPCSFLLEKQSGYQFYIFEIKSKCFLYHQIRSIMSVLLLVGQKK-ESPDIINDL 288 Query: 223 QAQDRKECGP---LAPPEGL 239 ++ P LA P L Sbjct: 289 LDINKNPAKPQYDLALPMPL 308 >gi|194043580|ref|XP_001928625.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2 [Sus scrofa] gi|311270525|ref|XP_003132902.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Sus scrofa] Length = 400 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 110/269 (40%), Gaps = 36/269 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + +G I HG Sbjct: 58 KIVLLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 116 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 117 RTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 171 Query: 110 RSYLYRIIT-----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 R+Y Y + T + + E R L ++L N +A G H+F F S Sbjct: 172 RTYFYMLPTFAFAHKDHDVQDETYR--LSTETLQRVNRLLAC--YKGTHNFHNFTSQKGP 227 Query: 165 ASSPIR--TIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 R +D F F I+V +SF+ QIR VG + + G + L Sbjct: 228 REPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPESVL 287 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 E++ + K P AP GL + V + Sbjct: 288 ERSW--GEAKVDVPKAPGLGLVLERVHFE 314 >gi|4455035|gb|AAD21042.1| pseudouridine synthase 1 [Homo sapiens] Length = 365 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 72/271 (26%), Positives = 109/271 (40%), Gaps = 46/271 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 26 LLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 84 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N++L I IL L V F+++ R+Y Sbjct: 85 KGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDARTY 139 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRSIH 162 Y + T A + + E R++A+ L G H+F F S Sbjct: 140 CYLLPT----FAFAHKD-----RDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQK 190 Query: 163 -CQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q S R I + V IRV +SF+ QIR VG + + G + Sbjct: 191 GPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPES 250 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 LE++ + K P AP GL + V + Sbjct: 251 VLERSWGTE--KVDVPKAPGLGLVLERVHFE 279 >gi|70166645|ref|NP_079491.2| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Homo sapiens] gi|114152895|sp|Q9Y606|TRUA_HUMAN RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|18027830|gb|AAL55876.1|AF318369_1 unknown [Homo sapiens] gi|94466373|gb|AAH09505.2| Pseudouridylate synthase 1 [Homo sapiens] gi|94466377|gb|AAH19320.2| Pseudouridylate synthase 1 [Homo sapiens] gi|193786660|dbj|BAG51983.1| unnamed protein product [Homo sapiens] gi|261860288|dbj|BAI46666.1| pseudouridylate synthase 1 [synthetic construct] gi|311347138|gb|ADP90494.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347141|gb|ADP90496.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347144|gb|ADP90498.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347147|gb|ADP90500.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347150|gb|ADP90502.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347153|gb|ADP90504.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347156|gb|ADP90506.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347159|gb|ADP90508.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347162|gb|ADP90510.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347165|gb|ADP90512.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347168|gb|ADP90514.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347171|gb|ADP90516.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347174|gb|ADP90518.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347177|gb|ADP90520.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347180|gb|ADP90522.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347183|gb|ADP90524.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347186|gb|ADP90526.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347189|gb|ADP90528.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347192|gb|ADP90530.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347195|gb|ADP90532.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347198|gb|ADP90534.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347201|gb|ADP90536.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347204|gb|ADP90538.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347207|gb|ADP90540.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347210|gb|ADP90542.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347213|gb|ADP90544.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347216|gb|ADP90546.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347219|gb|ADP90548.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347222|gb|ADP90550.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347225|gb|ADP90552.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347228|gb|ADP90554.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347231|gb|ADP90556.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347234|gb|ADP90558.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347237|gb|ADP90560.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347240|gb|ADP90562.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347243|gb|ADP90564.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347246|gb|ADP90566.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347249|gb|ADP90568.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347252|gb|ADP90570.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347255|gb|ADP90572.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] Length = 427 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 109/270 (40%), Gaps = 46/270 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 88 LLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 146 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N++L I IL L V F+++ R+Y Sbjct: 147 KGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDARTY 201 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRSIH 162 Y + T A + + E R++A+ L G H+F F S Sbjct: 202 CYLLPT----FAFAHKD-----RDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQK 252 Query: 163 -CQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q S R I + V IRV +SF+ QIR VG + + G + Sbjct: 253 GPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPES 312 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LE++ + K P AP GL + V + Sbjct: 313 VLERSWGTE--KVDVPKAPGLGLVLERVHF 340 >gi|315304866|ref|ZP_07875006.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] gi|313626765|gb|EFR95758.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] Length = 83 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Query: 167 SPIRTIDHFDVNSFGNLIEIRVVA---RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 S +RT+ D N E V+A FL+ +R G+L G G+ + D+ KAL Sbjct: 1 SKVRTLYSIDFYEEDN--ETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALL 58 Query: 224 AQDRKEC-GPLAPPEGLYFDSVEYS 247 A+DR++ APP+GLY V+Y Sbjct: 59 ARDRQKLISKTAPPQGLYLWRVDYE 83 >gi|19922728|ref|NP_611646.1| CG3045 [Drosophila melanogaster] gi|7291383|gb|AAF46811.1| CG3045 [Drosophila melanogaster] gi|16182987|gb|AAL13605.1| GH14326p [Drosophila melanogaster] gi|220945178|gb|ACL85132.1| CG3045-PA [synthetic construct] gi|220955082|gb|ACL90084.1| CG3045-PA [synthetic construct] Length = 499 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 91/258 (35%), Gaps = 57/258 (22%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 107 YFGWDYQ--GFACQEDSNDTIESNLFRALARTCLIESRATSNYHRCGRTDKEVSAFCQVI 164 Query: 63 HFDLVREWVP------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 DL + P + C LN L + + + + + ARF + R Sbjct: 165 SIDLRSKHPPESQLDPTALSSEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFDCVSR 223 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQASS 167 +Y Y PK LD MR A LV DF F +H ++ Sbjct: 224 TYRY-----------------YFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTN 266 Query: 168 PIRTIDHFDV---------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 +R + V NS ++ + + A +FL QIR + L LVG K + Sbjct: 267 YMRNLQSARVEACDQTNHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPGVI 326 Query: 219 EKALQAQDRKECGPLAPP 236 L + C P P Sbjct: 327 SDLLDVESNP-CKPQYTP 343 >gi|163755611|ref|ZP_02162730.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] gi|161324524|gb|EDP95854.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] Length = 262 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 56/259 (21%), Positives = 110/259 (42%), Gaps = 21/259 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G Y GWQ+Q + +++Q E+ + V G + + +GRTD+ V A ++A Sbjct: 8 YLITLQYLGFRYHGWQKQPDVNTVQRMTERTLAYVFGHKNFKLLASGRTDAKVSA-NEIA 66 Query: 63 HFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L + + + + L + K + I L ++ +++F+ + Y+Y + Sbjct: 67 -IELFLDNETLNIPEFLPLFNKNLPQDIRALAITETNEKFNIIQHPKVKEYIYLFAFGEK 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIH---------CQ-ASSP 168 + LD E M+ A+ G H T+ + H C+ + Sbjct: 126 YHPFAAPYMTNVLGDLDVELMKKGAKLFEGNHYLKTYCYKPTEHTILEGEIELCEITEND 185 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + T F S+ +RV F QIR +G+L L+G + ++++L Sbjct: 186 LYTASFFPEKSYV----LRVQGAGFKRHQIRMMMGTLILLGRHELDLDFIKRSLLPNSTL 241 Query: 229 ECGPLAPPEGLYFDSVEYS 247 E +AP GL + + + Sbjct: 242 EVNYIAPASGLMLNKMTFK 260 >gi|268568248|ref|XP_002647980.1| C. briggsae CBR-PUS-1 protein [Caenorhabditis briggsae] gi|187040672|emb|CAP20635.1| CBR-PUS-1 protein [Caenorhabditis briggsae AF16] Length = 437 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 104/278 (37%), Gaps = 49/278 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQG----SIEKAIFLVTGE-----IVVVHGAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ ++EKA ++ + A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMEKAGWITAAQREKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L R E V LN L + I + + FH + R+ Sbjct: 94 AVSAARQMCGMQLPRDDEKYKVDGPGILNNLL--PNDIRVFGMKRTINFFHPQKQCDYRT 151 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV----------GRHDFTTFRS- 160 Y Y T + P L RI+ + L G H+F + + Sbjct: 152 YSYTCPT----------FVFAKPTELTNAAFRISKETLAEVNDILSIYKGTHNFFNYTAK 201 Query: 161 ------------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 + + P D F I+I V +SF+ QIR VG + V Sbjct: 202 RAYDDMSSNRYIVSFECKEPFLFRDEFRKEDV-EFIQIVVKGQSFVLHQIRKMVGMVITV 260 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + ++++ + Q R + P+AP GL + Y Sbjct: 261 VRELHLKSAIQRSFEGQ-RMDI-PMAPGLGLLLERTHY 296 >gi|70166599|ref|NP_001002019.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo sapiens] gi|70166634|ref|NP_001002020.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo sapiens] gi|12804097|gb|AAH02901.1| Pseudouridylate synthase 1 [Homo sapiens] gi|123989720|gb|ABM83888.1| pseudouridylate synthase 1 [synthetic construct] gi|123999259|gb|ABM87208.1| pseudouridylate synthase 1 [synthetic construct] gi|158257916|dbj|BAF84931.1| unnamed protein product [Homo sapiens] gi|311347139|gb|ADP90495.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347142|gb|ADP90497.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347145|gb|ADP90499.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347148|gb|ADP90501.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347151|gb|ADP90503.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347154|gb|ADP90505.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347157|gb|ADP90507.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347160|gb|ADP90509.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347163|gb|ADP90511.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347166|gb|ADP90513.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347169|gb|ADP90515.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347172|gb|ADP90517.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347175|gb|ADP90519.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347178|gb|ADP90521.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347181|gb|ADP90523.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347184|gb|ADP90525.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347187|gb|ADP90527.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347190|gb|ADP90529.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347193|gb|ADP90531.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347196|gb|ADP90533.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347199|gb|ADP90535.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347202|gb|ADP90537.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347205|gb|ADP90539.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347208|gb|ADP90541.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347211|gb|ADP90543.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347214|gb|ADP90545.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347217|gb|ADP90547.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347220|gb|ADP90549.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347223|gb|ADP90551.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347226|gb|ADP90553.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347229|gb|ADP90555.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347232|gb|ADP90557.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347235|gb|ADP90559.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347238|gb|ADP90561.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347241|gb|ADP90563.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347244|gb|ADP90565.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347247|gb|ADP90567.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347250|gb|ADP90569.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347253|gb|ADP90571.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347256|gb|ADP90573.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] Length = 399 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 109/270 (40%), Gaps = 46/270 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 60 LLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 118 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N++L I IL L V F+++ R+Y Sbjct: 119 KGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDARTY 173 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRSIH 162 Y + T A + + E R++A+ L G H+F F S Sbjct: 174 CYLLPT----FAFAHKD-----RDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQK 224 Query: 163 -CQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q S R I + V IRV +SF+ QIR VG + + G + Sbjct: 225 GPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPES 284 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LE++ + K P AP GL + V + Sbjct: 285 VLERSWGTE--KVDVPKAPGLGLVLERVHF 312 >gi|257076635|ref|ZP_05570996.1| tRNA pseudouridine synthase A [Ferroplasma acidarmanus fer1] Length = 250 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 97/245 (39%), Gaps = 41/245 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + Y+G+ + G+QR +S++ SI K I G + A RTD V A V Sbjct: 3 YLIKYGYDGTSFTGFQRGNGENSVEDSIIK-ILKKYGIGNNIESAARTDRYVSARGNVML 61 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D I + + ILN I F++ +SA+ R + R + Sbjct: 62 VD---------------TDTNIGNVMGILNARIPGMFFYS-YSALDRY----LNPRHNSM 101 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS--PIRTIDHFDVNSFG 181 K +++I +++D + VG+HDF F C+ S +RTI + ++ Sbjct: 102 ---KQYSYIITENIDISRVMETLGEFVGQHDFVNF----CKLDSRNTVRTIKSINYSTRN 154 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + RSF+ QIRS + + GK LE LA PE L Sbjct: 155 GFYIINIQGRSFVWHQIRSMMAFALM---GKKHPFSLENKFTY--------LASPEPLVL 203 Query: 242 DSVEY 246 + Y Sbjct: 204 MDISY 208 >gi|213584576|ref|ZP_03366402.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 57 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 27/42 (64%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAG 49 IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AG Sbjct: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAG 57 >gi|290979041|ref|XP_002672243.1| predicted protein [Naegleria gruberi] gi|284085818|gb|EFC39499.1| predicted protein [Naegleria gruberi] Length = 483 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 58/249 (23%) Query: 48 AGRTDSGVHALRQV-----------AHFDLVREWVPVILCKALN---------AYLKISD 87 A RTD GV A+R H D + + LCK LN L + D Sbjct: 172 ACRTDRGVSAVRNAFACVMTLPNTQNHKDTFK-FNNEELCKTLNDRINNHVRIKNLNLMD 230 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAA 146 I I N+ V +F R YLY + PL AL+ +I K + N+ Sbjct: 231 QIKIFNIQRVPSRFVLHHWCQFRRYLYVL-----PLSALDLSSRNIITKCNNIFNLETNE 285 Query: 147 Q----------HLVGRHDFTTFRSIHCQASSP-----IRTIDHFDVNSFGNL--IEIRVV 189 Q H G H F F ++ + S ++T+ + N G+L + I + Sbjct: 286 QKCQKLNELLGHFEGIHLFHNF-TVDAKPGSDSSRRHVKTLKIIEQNLEGDLPHVVIEIS 344 Query: 190 ARSFLHTQIRSFVGSL------------KLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 RSF+ QIR +G++ V D + E +AQ + P+AP E Sbjct: 345 GRSFMLHQIRMMIGTVIALMRGMAPNMNTTVQDNTIVNDFFENLFKAQ-TEVLLPMAPSE 403 Query: 238 GLYFDSVEY 246 GL+ D++++ Sbjct: 404 GLFLDNLDF 412 >gi|308507857|ref|XP_003116112.1| CRE-PUS-1 protein [Caenorhabditis remanei] gi|308251056|gb|EFO95008.1| CRE-PUS-1 protein [Caenorhabditis remanei] Length = 438 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 107/273 (39%), Gaps = 37/273 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQG----SIEKAIFLVTGE-----IVVVHGAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ ++EKA ++ + A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMEKAGWITAAQRDKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVREWVPVILCKA--LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L R+ A LN L D I + + FH + R+ Sbjct: 94 AVSAARQMCGMQLPRDDDKYQTDGAGVLNNLL--PDDIRVFGMRRTINFFHPQKQCDYRT 151 Query: 112 YLYR----IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS------- 160 Y Y + + L A+ +PK E I + + G H+F + + Sbjct: 152 YSYTCPSFVFAKPTELT---NSAFRLPKETLAEVNDILSIY-KGTHNFFNYTAKRAYNDM 207 Query: 161 ------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + + P D F ++I V +SF+ QIR VG + V Sbjct: 208 SSNRYIVSFECKEPFLFRDEFRKEDV-EFVQIVVKGQSFVLHQIRKMVGMVITVVRELHL 266 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + ++++ + Q R + P+AP GL + Y Sbjct: 267 KSAIQRSFEGQ-RMDI-PMAPGLGLLLERTHYD 297 >gi|119618938|gb|EAW98532.1| pseudouridylate synthase 1, isoform CRA_c [Homo sapiens] Length = 432 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 109/270 (40%), Gaps = 46/270 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 93 LLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 151 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N++L I IL L V F+++ R+Y Sbjct: 152 KGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDARTY 206 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRSIH 162 Y + T A + + E R++A+ L G H+F F S Sbjct: 207 CYLLPT----FAFAHKD-----RDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQK 257 Query: 163 -CQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q S R I + V IRV +SF+ QIR VG + + G + Sbjct: 258 GPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPES 317 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LE++ + K P AP GL + V + Sbjct: 318 VLERSWGTE--KVDVPKAPGLGLVLERVHF 345 >gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis] Length = 471 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 69/277 (24%), Positives = 104/277 (37%), Gaps = 74/277 (26%) Query: 3 RYC-----MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--------AG 49 RYC +++ Y G G+ Q N Q ++E IF E ++ G Sbjct: 33 RYCRRHIALMVAYLGWDLDGFCAQNNS---QNTVESKIFKALIETKLIQSLETANYSRCG 89 Query: 50 RTDSGVHALRQVAHFDL------------------------VREWVP----VILCKALNA 81 RTD V A QV D+ R+ P + K LN+ Sbjct: 90 RTDKTVSAFSQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDYAKILNS 149 Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL--------- 132 L I +L + V++ F+AR++ R Y Y L + +L Sbjct: 150 VL--PQEIRVLAWAPVERTFNARYNCTSRQYKYFFPKGALNLKVSTVVDFLHFSAIVALF 207 Query: 133 --IPKSLDC---ENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHFDV-----NS 179 + C + M A++ L+G HDF F I + S +RT+ FDV N+ Sbjct: 208 SNFRRGTICVYFQLMEQASKRLIGEHDFRNFCKIDMSKNEIQSCVRTV--FDVQFTKVNA 265 Query: 180 FG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 G L +VA +FL QIR + L +G+GK Sbjct: 266 GGLNSRTLCCFTIVANAFLWHQIRCIMSVLFAIGEGK 302 >gi|330804770|ref|XP_003290364.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum] gi|325079531|gb|EGC33127.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum] Length = 449 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 28/173 (16%) Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 +E P + K LN L I +L + + F++RFS + R+Y Y Sbjct: 182 KEEFPYV--KMLNGVL--PPEIRVLGWAPIPFHFNSRFSTLFRTYKY------------- 224 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFD---VNSFGNL 183 + ++D M+ A H +G HDF+ F + + S R I F VN+ +L Sbjct: 225 ---FFTLNNMDLNLMKEAGNHYLGEHDFSNFCKMDIENVKSFKRVILEFSIEPVNNHNDL 281 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +FL QIR + L L+G K+ + + + L + G PP Sbjct: 282 YVATIKGYAFLWHQIRCMMAMLFLIGQKKFPVSIIPELLDTSN----GITKPP 330 >gi|302806719|ref|XP_002985091.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii] gi|300147301|gb|EFJ13966.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii] Length = 363 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 13/118 (11%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVH 56 + + Y+G GY G QR K +I+G +E+A+F G A RTD GV Sbjct: 5 IFVSYSGYGYQGMQRNKGCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAARTDKGVS 64 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A QV + P + +N++L I +L + V F A+ RR Y Y Sbjct: 65 AAGQVVSGRFFVD--PPGFVERVNSHL--PKQIRVLGFTRVTGTFSAKNLCDRRRYEY 118 >gi|251823909|ref|NP_001156523.1| tRNA pseudouridine synthase A [Ovis aries] gi|238815029|gb|ACR56711.1| pseudouridylate synthase 1 [Ovis aries] Length = 400 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 108/268 (40%), Gaps = 36/268 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AG 49 + +++ Y+G GY G QR GSS +IE + + +G I HG Sbjct: 58 KIVLLMAYSGKGYHGMQRNV-GSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 116 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 117 RTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 171 Query: 110 RSYLYRIIT-----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 R+Y Y + T + L E R L ++L N +A G H+F F S Sbjct: 172 RTYFYMLPTFAFAHKDHDLQDETYR--LSAETLGRVNRLLAC--YKGTHNFHNFTSQKGP 227 Query: 165 ASSPIR--TIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 R +D F F I+V +SF+ QIR VG + + G L Sbjct: 228 HEPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPEGVL 287 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 E+ + K P AP GL + V + Sbjct: 288 ERCW--GEAKVDVPKAPGLGLVLERVHF 313 >gi|302809155|ref|XP_002986271.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii] gi|300146130|gb|EFJ12802.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii] Length = 363 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 13/118 (11%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVH 56 + + Y+G GY G QR K +I+G +E+A+F G A RTD GV Sbjct: 5 IFVSYSGYGYQGMQRNKGCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAARTDKGVS 64 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A QV + P + +N++L I +L + V F A+ RR Y Y Sbjct: 65 AAGQVVSGRFFVD--PPGFVERVNSHL--PKQIRVLGFTRVTGTFSAKNLCDRRRYEY 118 >gi|170586438|ref|XP_001897986.1| tRNA pseudouridine synthase family protein [Brugia malayi] gi|158594381|gb|EDP32965.1| tRNA pseudouridine synthase family protein [Brugia malayi] Length = 225 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 14/127 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEI-----VVVHGAGRTDSG 54 Y +++ Y G Y G Q QK+ +I+G + KA+ ++ ++ A RTD Sbjct: 29 YALLLAYQGKKYNGMQVQKDFPTIEGELFKAMAKCGYICENDVFSPVRFAFQRAARTDRS 88 Query: 55 VHALRQVAHFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L E L A LN +L + I +L + + F A + +R+ Sbjct: 89 VSAARQMCSMRLAPENHEYFLKTATDKLNTHL--PEEIRVLGVRRATRSFKAHKNCDKRT 146 Query: 112 YLYRIIT 118 Y Y + T Sbjct: 147 YSYTLPT 153 >gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138] gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata] Length = 438 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 95/237 (40%), Gaps = 41/237 (17%) Query: 10 YNGSGYFGWQRQKNGS---SIQGSIEKA------IFLVTGEIVVVHGAGRTDSGVHALRQ 60 Y G Y G QK+ + +I+G+I +A + +T + GRTD GV A+ Q Sbjct: 94 YLGWNYNGLAIQKDPTPLPTIEGTIIEALNKCKLVPSITPQEFEFSRCGRTDKGVSAMNQ 153 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD------------KQFHARFSAI 108 V + N + +I ++ILN + D F ARFS Sbjct: 154 VISLRVRSNLTDEEQKDPRNDHKEIQ-YVAILNQLLPDDIRISAVCLRPPNSFDARFSCE 212 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QAS 166 R Y Y L + G LD + M+ AA+ G HDF F + Q + Sbjct: 213 YRHYKY--------LFHKDG--------LDLDRMQKAAKLYEGEHDFRNFCKLDGSKQIT 256 Query: 167 SPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + RT+ ++ + + ++ +FL Q+R L LVG G T +EK L Sbjct: 257 NYNRTMISANIKHVYNDFYCFDLIGSAFLWHQVRCMTAILFLVGQGLEEPTLIEKML 313 >gi|291415803|ref|XP_002724139.1| PREDICTED: pseudouridylate synthase 1-like, partial [Oryctolagus cuniculus] Length = 391 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 105/274 (38%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AG 49 + +++ Y+G GY G QR GSS +IE + + +G I HG Sbjct: 58 KIVLLLAYSGKGYHGMQRNV-GSSQFRTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 116 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 117 RTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 171 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + E R++A+ L G H F F Sbjct: 172 RTYFYMLPT----FAFAHKD-----RDPQDETYRLSAETLQRVNRLLACYQGTHSFHNFT 222 Query: 160 SIHCQASSPIRT------IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R + V IRV +SF+ QIR VG + + G Sbjct: 223 SQKGPREPSARRYILQMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYA 282 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ D K P AP GL + V + Sbjct: 283 PESVLERSW--GDEKVDVPKAPGLGLVLERVHFE 314 >gi|321464083|gb|EFX75094.1| hypothetical protein DAPPUDRAFT_12957 [Daphnia pulex] Length = 319 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 27/262 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 ++ +++ Y+G Y G Q +++G + +A + + + V A RTD Sbjct: 4 KFAILLSYSGQNYLGMQFNHGFKTVEGELFQAFMKLEIMDDESFKSPQTVHFQRAARTDK 63 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+RQV + L LN+ L + I + + V F+++ + RSY Sbjct: 64 GVSAVRQVISLKI--RTPDEDLVNQLNSLL--PNCIKVFAMRKVTGGFNSKIACDSRSYS 119 Query: 114 YRIIT---RQAPLALEKGRAWLIPKSLDCENMRIAA-QHLVGRHDFTTFRSIHCQASSPI 169 Y + T +A G + K LD N ++ + H+FT+ R Q S Sbjct: 120 YVMPTFAFTSKEVAPTHGYR-VTSKILDEVNSLLSVFKGTRNYHNFTSGRP--AQDPSCK 176 Query: 170 RTIDHFDV-NSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 R I F + F ++I + +SF+ QIR +G V G L+KA + Sbjct: 177 RYITQFSCGDPFMIKEVEFVKITIKGQSFMLHQIRKMIGLTISVMRGFVPREILDKAFKM 236 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 + + P AP L + Y Sbjct: 237 E--RVNVPTAPSLNLLLEEPHY 256 >gi|222625021|gb|EEE59153.1| hypothetical protein OsJ_11064 [Oryza sativa Japonica Group] Length = 403 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 51/223 (22%) Query: 8 IEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHALRQV 61 I Y G ++G+ + + S I ++E+A LV + GRTD GV A QV Sbjct: 98 IMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSATGQV 157 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ---FHARFSAIRRSYLYRIIT 118 ++ +L+ I L ++D + F ARFS + R Y Y Sbjct: 158 -----------------ISLFLR--SNIKDAKLDVLDNKSGDFLARFSCLGREYKY---- 194 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDV 177 KG L+ M+ AA +G HD+ F + S+ R I F++ Sbjct: 195 -----LFWKG-------DLNISEMQKAALKFIGEHDYRNFCKMDAANVSNYRRHITDFNI 242 Query: 178 NSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 +++ L I + +FL Q+R V L L+G G T Sbjct: 243 SAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLET 285 >gi|218135247|ref|ZP_03464051.1| hypothetical protein BACPEC_03152 [Bacteroides pectinophilus ATCC 43243] gi|217990632|gb|EEC56643.1| hypothetical protein BACPEC_03152 [Bacteroides pectinophilus ATCC 43243] Length = 83 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + FD++ G I IRV FL+ +R G+L G + T +++AL +R+ GP Sbjct: 6 EKFDLDR-GREIVIRVSGNGFLYNMVRIIAGTLIDAGCKRRTPLSVKEALDGCNRELAGP 64 Query: 233 LAPPEGLYFDSVEY 246 APP+GL +++ Sbjct: 65 TAPPQGLTLIEIKH 78 >gi|125544113|gb|EAY90252.1| hypothetical protein OsI_11824 [Oryza sativa Indica Group] Length = 403 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 51/220 (23%) Query: 8 IEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHALRQV 61 I Y G ++G+ + + S I ++E+A LV + GRTD GV A QV Sbjct: 98 IMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSATGQV 157 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ---FHARFSAIRRSYLYRIIT 118 ++ +L+ I L ++D + F ARFS + R Y Y Sbjct: 158 -----------------ISLFLR--SNIKDAKLDVLDNKSGDFLARFSCLGREYKY---- 194 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDV 177 KG L+ M+ AA +G HD+ F + S+ R I F++ Sbjct: 195 -----LFWKG-------DLNISEMQKAALKFIGEHDYRNFCKMDAANVSNYRRHITDFNI 242 Query: 178 NSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 +++ L I + +FL Q+R V L L+G G Sbjct: 243 SAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQG 282 >gi|168049023|ref|XP_001776964.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671665|gb|EDQ58213.1| predicted protein [Physcomitrella patens subsp. patens] Length = 680 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 14/150 (9%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN--M 142 + + I +L V F+ARFS + R Y Y I + + W + + + + M Sbjct: 387 LPEDIRVLGWCPVPPGFNARFSCMYREYKYFFIDDGLNIDV-----WTLIYAFNRQYNVM 441 Query: 143 RIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDV----NSFG--NLIEIRVVARSFLH 195 + A + G HDFT F + + +RTI HFD+ +G ++ + V +FL Sbjct: 442 KFACKQFEGEHDFTNFCKMDAANVHNYMRTITHFDIIPSNEKWGGKSVWIMNVKGTAFLW 501 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 Q+R L +VG G T +E+ L + Sbjct: 502 HQVRCMAAVLFMVGAGHEKPTIVEELLDVK 531 >gi|40882706|gb|AAR96247.1| putative pseudouridine synthase [Oryza sativa Japonica Group] gi|108708473|gb|ABF96268.1| tRNA pseudouridine synthase A family protein [Oryza sativa Japonica Group] Length = 411 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 51/231 (22%) Query: 8 IEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGVHALRQV 61 I Y G ++G+ + + S I ++E+A LV + GRTD GV A QV Sbjct: 98 IMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSATGQV 157 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ---FHARFSAIRRSYLYRIIT 118 ++ +L+ I L ++D + F ARFS + R Y Y Sbjct: 158 -----------------ISLFLR--SNIKDAKLDVLDNKSGDFLARFSCLGREYKY---- 194 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDV 177 KG L+ M+ AA +G HD+ F + S+ R I F++ Sbjct: 195 -----LFWKG-------DLNISEMQKAALKFIGEHDYRNFCKMDAANVSNYRRHITDFNI 242 Query: 178 NSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 +++ L I + +FL Q+R V L L+G G T ++ L Sbjct: 243 SAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLETPCIVDSLL 293 >gi|194755854|ref|XP_001960194.1| GF13245 [Drosophila ananassae] gi|190621492|gb|EDV37016.1| GF13245 [Drosophila ananassae] Length = 492 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 86/234 (36%), Gaps = 55/234 (23%) Query: 14 GYFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQV 61 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 105 SYFGWDYQ--GLACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAFCQV 162 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILN------------LSIVDKQFHARFSAIR 109 DL + P A + +I D +LN + + + ARF + Sbjct: 163 ISIDLRSKHPPESQLDATSISSEI-DYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCVA 221 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTF--RSIHCQAS 166 R+Y Y PK LD M+ A HLV DF F +H + Sbjct: 222 RTYRY-----------------YFPKGDLDIPAMQEACNHLVRHADFRNFCKMDVHNGVT 264 Query: 167 SPIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + R + V +S ++ + + A +FL QIR + L LVG K Sbjct: 265 NYTRNLQSARVEACEETLTDSGYDMYYLEIQANAFLWHQIRCIMAVLILVGQKK 318 >gi|323449394|gb|EGB05282.1| hypothetical protein AURANDRAFT_12283 [Aureococcus anophagefferens] Length = 239 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 19/131 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG-------------AG 49 + +++ Y G+ Y+G Q+Q S + +IE A+ VH A Sbjct: 7 KLALLLGYRGANYYGLQKQSKESDLP-TIELALQEALNRAGAVHEGNQGDLSKIGWSRAA 65 Query: 50 RTDSGVHALRQV--AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 RTD V A RQV A ++ + VP +L + LN ++ D I + + V K F+ + S Sbjct: 66 RTDKRVSAARQVVSAKLEVENDDVPALLER-LNG--ELPDDIKVFDAVRVIKGFNCKQSC 122 Query: 108 IRRSYLYRIIT 118 RR Y Y + T Sbjct: 123 DRRHYTYLLPT 133 >gi|115756434|ref|XP_001202324.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115938206|ref|XP_796203.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 494 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 32/264 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + +++ Y G+ Y G QR +I+ + A+ + +G I G RTD Sbjct: 72 KVAILLSYAGANYVGMQRNPGVQTIEEDLVNAL-VKSGAIPEDCGRNMNKMSFQRCARTD 130 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV ++ + L + +N +L I ++ ++ F+ + + R+Y Sbjct: 131 KGVSAAGQVVSLKVL---MLDNLMERINEHL--PPVIRVMGVTRTTGGFNCKNNCEFRTY 185 Query: 113 LYRIITRQ-APL---ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 +Y I T PL LEK R E + + +G H+F F S S Sbjct: 186 MYLIPTFAFTPLEDFTLEKYRV----SDEKIEEVGEQLKKYIGTHNFHNFTSGKAFTDPS 241 Query: 168 PIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 R I F V+ I+V +SF+ QIR +G + V G + +E+A Sbjct: 242 ANRYIKEFTCEKGFVDDGMEFAVIKVKGQSFMLHQIRKMLGLVLAVVRGLTPPSTVERAF 301 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 Q+ K P AP GL ++V Y Sbjct: 302 --QEPKLDIPRAPGLGLVLEAVHY 323 >gi|332254114|ref|XP_003276176.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Nomascus leucogenys] Length = 421 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 110/273 (40%), Gaps = 45/273 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AG 49 + +++ Y+G GY G Q + GS +IE + + +G I HG Sbjct: 78 KIVLLMAYSGKGYHGMQWRNLGSLQAQTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 137 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 138 RTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDA 192 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E R++A+ L G H+F F Sbjct: 193 RTYCYLLPT----FAFAHKD-----RDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 243 Query: 160 SIHC-QASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S Q S R I + V IRV +SF+ QIR VG + + G Sbjct: 244 SQKGPQEPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYA 303 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LE++ ++ K P AP GL + V + Sbjct: 304 PESVLERSWGSE--KVDVPKAPGLGLVLERVHF 334 >gi|323337610|gb|EGA78855.1| Pus2p [Saccharomyces cerevisiae Vin13] Length = 406 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTDSGV 55 M++ Y GSGY+G Q +I+G I +F V G I + A RTD GV Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDV-GAISEENSLAPKKNSFMAAARTDKGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 60 HAMLNLLSLKITLREDTV---AKLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYL 114 Query: 116 I 116 I Sbjct: 115 I 115 >gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Pichia pastoris CBS 7435] Length = 422 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 74/194 (38%), Gaps = 34/194 (17%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD---------- 98 GRTD GV A+ QV ++ P L N +K D I+ILN + Sbjct: 104 GRTDKGVSAMNQVIGLNVRSRLTPEELESPEND-IKELDYINILNQLLPSDIRIHGVCLR 162 Query: 99 --KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 K F ARFS R Y Y + ++G LD E+M+ AA G HDF Sbjct: 163 PPKGFDARFSCRGRHYKY--------VFQDEG--------LDLESMKKAAPMFEGVHDFR 206 Query: 157 TFRSIH-----CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 F + + +R+ + + +FL Q+R V L ++G G Sbjct: 207 NFCKVDGAKQMTNYTRAVRSSQILPLEGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQG 266 Query: 212 KWTSTDLEKALQAQ 225 + + K L Q Sbjct: 267 FESPDIVSKLLDIQ 280 >gi|296213295|ref|XP_002753209.1| PREDICTED: tRNA pseudouridine synthase A [Callithrix jacchus] Length = 428 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 46/270 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 89 LLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 147 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N +L I IL L V F+++ R+Y Sbjct: 148 KGVSAAGQVVSLKV---WLIDGILEKINRHL--PSHIRILGLKRVTGGFNSKNKCDARTY 202 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRSIH 162 Y + T A + + E R++A+ L G H+F F S Sbjct: 203 CYLLPT----FAFAHKD-----RDVQDETYRLSAETLQQVNRLLACYEGTHNFHNFTSQK 253 Query: 163 -CQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q S R I + V IRV +SF+ QIR VG + + G + Sbjct: 254 GPQEPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPES 313 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LE++ + K P AP GL + V + Sbjct: 314 LLERSWGTE--KVDVPKAPGLGLVLERVHF 341 >gi|148693448|gb|EDL25395.1| pseudouridine synthase 3, isoform CRA_a [Mus musculus] Length = 361 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 44/158 (27%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQ 147 I +L + V+ F ARFS + R+Y Y P++ LD M AAQ Sbjct: 53 IRVLAWAPVEPSFSARFSCLERTYRY-----------------FFPRADLDIATMNYAAQ 95 Query: 148 HLVGRHDFTTF-------------RSIHC-------QASSPIRTIDHFDVNSFGNLIEIR 187 VG HDF R+I C Q+ R + F L + Sbjct: 96 KYVGTHDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPF------QLCQFE 149 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 V+ ++FL+ Q+R + L L+G G +++ L Q Sbjct: 150 VIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQ 187 >gi|328771895|gb|EGF81934.1| hypothetical protein BATDEDRAFT_87010 [Batrachochytrium dendrobatidis JAM81] Length = 491 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +++ Y G+GY G Q + SI+ + KA+ +G I + A RTD GVHA QV Sbjct: 100 KVVLLMSYCGTGYQGMQINPDVPSIELDLHKAL-AASGAIAFMRCA-RTDKGVHAGGQVV 157 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 ++ + +I + +NA ++ I + + V +QFHA+ R Y Y + T Sbjct: 158 SLKMIIQDSDII--ERINA--RLPPQIRVWGYARVQQQFHAKHHCDSRIYEYILPT 209 >gi|151943741|gb|EDN62051.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789] gi|190407023|gb|EDV10290.1| pseudouridine synthase [Saccharomyces cerevisiae RM11-1a] gi|256269708|gb|EEU04978.1| Pus2p [Saccharomyces cerevisiae JAY291] gi|259146442|emb|CAY79699.1| Pus2p [Saccharomyces cerevisiae EC1118] gi|323333685|gb|EGA75078.1| Pus2p [Saccharomyces cerevisiae AWRI796] gi|323348667|gb|EGA82910.1| Pus2p [Saccharomyces cerevisiae Lalvin QA23] gi|323354937|gb|EGA86768.1| Pus2p [Saccharomyces cerevisiae VL3] Length = 370 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTDSGV 55 M++ Y GSGY+G Q +I+G I +F V G I + A RTD GV Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDV-GAISEENSLAPKKNSFMAAARTDKGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 60 HAMLNLLSLKITLREDTV---AKLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYL 114 Query: 116 I 116 I Sbjct: 115 I 115 >gi|297693488|ref|XP_002824050.1| PREDICTED: tRNA pseudouridine synthase A-like [Pongo abelii] Length = 424 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 46/270 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 85 LLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 143 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N++L I IL L V F+++ R+Y Sbjct: 144 KGVSAAGQVVSLKV---WLIDNILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDARTY 198 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRSIH 162 Y + T A + + E R++A+ L G H+F F S Sbjct: 199 CYLLPT----FAFAHKD-----RDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQK 249 Query: 163 -CQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q S R I + V IRV +SF+ QIR VG + + G Sbjct: 250 GPQEPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPEC 309 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LE++ + K P AP GL + V + Sbjct: 310 VLERSWGTE--KVDVPKAPGLGLVLERVHF 337 >gi|326429850|gb|EGD75420.1| hypothetical protein PTSG_06496 [Salpingoeca sp. ATCC 50818] Length = 460 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 41/154 (26%) Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 K LN L I +++ VD F ARFS R Y Y + + Sbjct: 164 KILNGLL--PPEIRVVDWGAVDTDFSARFSCNARHYKY----------------FFHRAN 205 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSIHCQA------SSPIRTIDHFDV-----------NS 179 +D M+ A HLVG HDF F C+A ++ +RTI V +S Sbjct: 206 MDTAAMQAACDHLVGEHDFRNF----CKADVAGGVTNFVRTIKEARVCPAEIGDASVHSS 261 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 G +L E ++ +FL Q+R + L +VG G Sbjct: 262 DGDFDLWEFNIIGHAFLWHQVRCMMAVLFMVGRG 295 >gi|10086461|gb|AAG12521.1|AC015446_2 Putative pseudouridine synthase [Arabidopsis thaliana] Length = 442 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 31/138 (22%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + D I ++ S FHARFS R Y Y + ++L+ M Sbjct: 220 LPDDIRVIGWSPAPIDFHARFSCYAREYKY----------------FFWRQNLNLSAMDF 263 Query: 145 AAQHLVGRHDFTTF-----RSIHCQASSPIRTIDHFDVNSFGN------LIEIRVVARSF 193 A + +G HDF F ++HC R + F+V+ N L + +F Sbjct: 264 AGKKFIGEHDFRNFCKMDVANVHCYT----RRVTFFEVSPCQNSHEGDQLCTFTMRGSAF 319 Query: 194 LHTQIRSFVGSLKLVGDG 211 L QIR V L ++G G Sbjct: 320 LWHQIRCMVAVLFMIGQG 337 >gi|109099290|ref|XP_001113470.1| PREDICTED: tRNA pseudouridine synthase A-like [Macaca mulatta] Length = 483 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 109/270 (40%), Gaps = 46/270 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEK---AIFLVTGEIVVVHG----------AGRTD 52 +++ Y+G GY G QR GSS +IE + + +G I HG RTD Sbjct: 144 LLMAYSGKGYHGMQRNV-GSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTD 202 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + W+ + + +N++L I IL L V F+++ R+Y Sbjct: 203 KGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDARTY 257 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFRSIH 162 Y + T A + + E R++A+ L G H+F F S Sbjct: 258 CYLLPT----FAFAH-----KDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQK 308 Query: 163 -CQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q S R I + V IRV +SF+ QIR VG + + G + Sbjct: 309 GPQEPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPES 368 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LE++ + K P AP GL + V + Sbjct: 369 VLERSWGTE--KVDVPKAPGLGLVLERVHF 396 >gi|330443553|ref|NP_011452.2| Pus2p [Saccharomyces cerevisiae S288c] gi|1403093|emb|CAA56699.1| pseudouridine synthase 2 [Saccharomyces cerevisiae] gi|329138894|tpg|DAA08039.2| TPA: Pus2p [Saccharomyces cerevisiae S288c] Length = 370 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTDSGV 55 M++ Y GSGY+G Q +I+G I +F V G I + A RTD GV Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDV-GAISEENSLAPKKNSFMAAARTDKGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 60 HAMLNLLSLKITLREDTV---AKLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYL 114 Query: 116 I 116 I Sbjct: 115 I 115 >gi|19113277|ref|NP_596485.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces pombe 972h-] gi|74676179|sp|O94295|PUS2_SCHPO RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA pseudouridylate synthase 2; AltName: Full=tRNA-uridine isomerase 2 gi|3850107|emb|CAA21896.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces pombe] Length = 451 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 12/125 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSI----EKAIFLVTGEIVVVH----GAGRTDS 53 +R +++ Y+G GY G Q +I+G + +K +L T I H A RTD Sbjct: 39 VRIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDK 98 Query: 54 GVHALRQVAHFDL-VREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 GVH LR + +L V + + + L K LN L I + ++ K F+ R S R+ Sbjct: 99 GVHTLRNLISLNLFVDKPLDISLLKTELNEAL--CSQIRVWSVFPAPKYFNPRISCESRT 156 Query: 112 YLYRI 116 Y Y I Sbjct: 157 YEYLI 161 >gi|226468594|emb|CAX69974.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum] Length = 388 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 58/142 (40%), Gaps = 24/142 (16%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I +L S V +F+ARF RRSY Y + LD E+M A Sbjct: 181 IRVLAWSPVSPEFNARFDCRRRSYEY----------------YFPESGLDIESMIDAGNR 224 Query: 149 LVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRS 200 LVG HDF F I S +R I +N + L + V A FL+ QIR Sbjct: 225 LVGVHDFRNFCASRIEKDTVSFVREIFEVVINVVDSSDHHTKLYCLCVSASGFLYHQIRY 284 Query: 201 FVGSLKLVGDGKWTSTDLEKAL 222 L +VG G + + ++ L Sbjct: 285 IASILFMVGRGYESPSVIDDML 306 >gi|207345339|gb|EDZ72195.1| YGL063Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 330 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 18/122 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTDSGV 55 M++ Y GSGY+G Q +I+G I +F V G I + A RTD GV Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDV-GAISEENSLAPKKNSFMAAARTDKGV 59 Query: 56 HALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 HA+ + + +RE LNA L I + + V+K+F+AR + R Y Y Sbjct: 60 HAMLNLLSLKITLRE----DTVAKLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQY 113 Query: 115 RI 116 I Sbjct: 114 LI 115 >gi|302656723|ref|XP_003020113.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517] gi|291183894|gb|EFE39489.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517] Length = 614 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 84/231 (36%), Gaps = 60/231 (25%) Query: 37 LVTGEIVVVHGAG--RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNL 94 ++ ++ G G T SGV + +D + + +P I + LN L + I +L Sbjct: 205 VMDSDVATESGMGDRNTQSGVSDTGEAKGWDDIADELPYI--QILNGAL--PEDIRVLAW 260 Query: 95 SI-VDKQFHARFSAIRRSYLY-------------RIITRQAPLALEKGRAWLIPKSLDCE 140 + F ARFS +R Y Y R I R + L + A L LD E Sbjct: 261 CPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGARGIVRSSELKDDLSLARLREGWLDIE 320 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQAS----------------SPIRTIDHF--------- 175 MR AAQ+ VG HDF F + P RT F Sbjct: 321 AMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPF 380 Query: 176 --------------DVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 D+N + G + V +FL QIR VG L LVG G Sbjct: 381 ENGPRNTGVPESIDDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQG 431 >gi|83305357|sp|P53167|PUS2_YEAST RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA pseudouridylate synthase 2; AltName: Full=tRNA-uridine isomerase 2 gi|1322568|emb|CAA96766.1| PUS2 [Saccharomyces cerevisiae] Length = 370 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTDSGV 55 M++ Y GSGY+G Q +I+G I +F V G I + A RTD GV Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDV-GAISEENSLAPKKNSFMAAARTDKGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 60 HAMLNLLSLKITLREDTV---AKLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYL 114 Query: 116 I 116 I Sbjct: 115 I 115 >gi|302781376|ref|XP_002972462.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii] gi|300159929|gb|EFJ26548.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii] Length = 428 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 21/126 (16%) Query: 8 IEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 + Y G+ Y G Q Q+ + S++ +E+AI+ G + V + RTD GV Sbjct: 8 VGYVGTDYKGLQIQRGVAGIHSVENELEEAIYKAGGISEENYRHLDKVRWKRSSRTDKGV 67 Query: 56 HALRQVAHFDL---VREWVP----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 H+L V L V W+ + + A NAYL + ISI + V K F AR S Sbjct: 68 HSLCTVVTMKLEVAVNSWLNDVDGIKIADAFNAYLPAN--ISIFGVVPVTKSFDARRSCY 125 Query: 109 RRSYLY 114 R+Y Y Sbjct: 126 SRTYDY 131 >gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Pichia pastoris GS115] gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Pichia pastoris GS115] Length = 438 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 71/194 (36%), Gaps = 34/194 (17%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD---------- 98 GRTD GV A+ QV ++ P L N +K D I+ILN + Sbjct: 120 GRTDKGVSAMNQVIGLNVRSRLTPEELESPEND-IKELDYINILNQLLPSDIRIHGVCLR 178 Query: 99 --KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 K F ARFS R Y Y + LD E+M+ AA G HDF Sbjct: 179 PPKGFDARFSCRGRHYKYVFQD----------------EGLDLESMKKAAPMFEGVHDFR 222 Query: 157 TFRSIH-----CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 F + + +R+ + + +FL Q+R V L ++G G Sbjct: 223 NFCKVDGAKQMTNYTRAVRSSQILPLEGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQG 282 Query: 212 KWTSTDLEKALQAQ 225 + + K L Q Sbjct: 283 FESPDIVSKLLDIQ 296 >gi|323305032|gb|EGA58786.1| Pus2p [Saccharomyces cerevisiae FostersB] Length = 370 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTDSGV 55 M++ Y GSGY+G Q +I+G I +F V G I + A RTD GV Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDV-GAISEENSLAPKKNSFMAAARTDKGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 60 HAMLNLLSLKITLREDTV---AKLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYL 114 Query: 116 I 116 I Sbjct: 115 I 115 >gi|320582058|gb|EFW96276.1| Non-essential tRNA:pseudouridine synthase [Pichia angusta DL-1] Length = 404 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 91/238 (38%), Gaps = 53/238 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 R + Y G Y G Q + S+I ++E I + ++ GRTD Sbjct: 59 RIALKFSYLGWNYHGLAYQNDTSNI-PTVELFILKALEKTKLIRNLDPTDCDFSRCGRTD 117 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD------------KQ 100 GV A+ QV + + LN +K D + ILN + + + Sbjct: 118 KGVSAMNQVISLVVRSNLTQDEMANPLND-VKELDYVKILNKVLPEDIRIHSICLRPPEG 176 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARFS + R Y Y QA L +EK M+ AA + VG DF F Sbjct: 177 FDARFSCLSRHYKY--FFEQANLNIEK--------------MQQAASYFVGEQDFRNF-- 218 Query: 161 IHCQASSPIRTIDH--------FDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVG 209 C+ + +++ + FG+ + + +FL Q+RS + L LVG Sbjct: 219 --CKVDGSKQIVNYKRKIISSSIERTKFGHKTYVFSLRGSAFLWHQVRSMMSILFLVG 274 >gi|47187449|emb|CAG13480.1| unnamed protein product [Tetraodon nigroviridis] Length = 97 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 10/92 (10%) Query: 3 RYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHA 57 RY + +Y G+ Y G + Q S+Q +E A+ L V + + RTD+GVHA Sbjct: 1 RYLIFFQYIGTKYSGVVKVPPHQLFKKSVQDHLEDALRKLRPLNPVSLSVSSRTDAGVHA 60 Query: 58 LRQVAHFDLVRE-----WVPVILCKALNAYLK 84 L AHFDL R + IL ALN +L+ Sbjct: 61 LCNSAHFDLQRRNDKPPFTADILVDALNYHLR 92 >gi|47208274|emb|CAF91572.1| unnamed protein product [Tetraodon nigroviridis] Length = 375 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 32/225 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK---AIFLVTGEIVVVHG----------AG 49 + +++ Y+G GY+G QR GSS +IE A + +G I H Sbjct: 76 KVALLLAYSGKGYYGMQRNP-GSSEFRTIEDDLVAALVKSGCIPENHAEDMKKMSFQRCA 134 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV L W+ L + +N +L I +L + V + F+++ + Sbjct: 135 RTDKGVSAAGQVVSLKL---WLIDDLAEKINQHL--PPQIRVLGVKRVTQGFNSKNNCDA 189 Query: 110 RSYLYRIIT-----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC- 163 R+Y Y + T + + A + L P++L N A G H+F F S Sbjct: 190 RTYAYMLPTVAFAPKDSDAASDAASFRLQPETLQRVNRLFALYK--GTHNFHNFTSQKAP 247 Query: 164 QASSPIRTIDHFDVNS--FGNLIEIRVV---ARSFLHTQIRSFVG 203 S R + H G E V+ +SF+ QIR +G Sbjct: 248 NDPSARRYVTHVCCGEPFMGGDTEFAVITVRGQSFMLHQIRKMIG 292 >gi|331234741|ref|XP_003330029.1| pseudouridine synthase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309019|gb|EFP85610.1| pseudouridine synthase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 252 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 30/163 (18%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + +++ +L V F RFS R Y Y ++P A LD E M+ Sbjct: 116 LHNSVRVLAWLPVHHDFDTRFSCQARHYKYFFSLYKSPQA----------PGLDIEAMKW 165 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 AA L+G HDF F I P + + HF R L +I+ + Sbjct: 166 AAHRLIGEHDFHNFFKI-----DPSKQLTHF--------------RRKILSAEIKPVLNP 206 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 L+ S+ EK LQ Q + P EG D ++Y Sbjct: 207 HHLLQQQPSGSSGSEKDLQPQIYPDALSPETLSEGTPSDKLDY 249 >gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895] gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895] Length = 432 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 86/234 (36%), Gaps = 60/234 (25%) Query: 14 GYFGWQRQKNGSSIQG------SIEKAIFLVTGEIVVVHG----------AGRTDSGVHA 57 Y GW NG +IQ ++E I + +V GRTD GV A Sbjct: 89 AYLGWNY--NGLAIQKDPTPLPTVEGTILEAMNKCRMVPSMVPQDYKFSRCGRTDKGVSA 146 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD------------KQFHARF 105 + QV + P N +I I ILN + D K F ARF Sbjct: 147 MNQVISLRVRSNLTPQEQEDPANDAREIP-YIHILNQLLPDDIRISAICLRPPKGFDARF 205 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHC- 163 S R Y Y L KS LD M AA+ G HDF F + Sbjct: 206 SCKYRHYKY-----------------LFNKSGLDLSKMEEAARLYEGEHDFRNFCKLDGS 248 Query: 164 -QASSPIRT-----IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 Q ++ RT I H D G++ ++ +FL Q+R + +L +VG G Sbjct: 249 KQITNFKRTILSAKILHVD----GDMYCFDLLGSAFLWHQVRCMMANLFIVGQG 298 >gi|168058399|ref|XP_001781196.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667349|gb|EDQ53981.1| predicted protein [Physcomitrella patens subsp. patens] Length = 499 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 13/123 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +I+ Y G+ Y G QR +I+G +E+A+F G A RTD Sbjct: 58 KVALILAYCGAAYQGMQRNPGAITIEGELEQALFRADAIAECNFGDMRKVDWMRAARTDK 117 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+ Q+ LV + P L + +N +L I + + V F+A+ +R Y Sbjct: 118 GVSAIGQIVSARLVID--PPGLVERVNQHL--PKDIRVFGYTRVTSNFNAKQMCDKRRYE 173 Query: 114 YRI 116 Y + Sbjct: 174 YLV 176 >gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera] Length = 466 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 27/168 (16%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I ++ V FHARFS + R Y Y + +L+ M A + Sbjct: 229 IRVMGWCPVPIGFHARFSCLSREYKY----------------FFWRGNLNILAMESAGKK 272 Query: 149 LVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSF 201 VG HDF F + + R I F++ N L I++ +FL Q+R Sbjct: 273 FVGEHDFRNFCKMDAVNVHNYRRHIISFEIAPTNNRYDGNQLWAIKIKGSAFLWHQVRCM 332 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 V L ++G G S D+ AL +R P +AP L +S E+ Sbjct: 333 VAVLFMIGQG-LESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEF 379 >gi|242215757|ref|XP_002473691.1| predicted protein [Postia placenta Mad-698-R] gi|220727176|gb|EED81103.1| predicted protein [Postia placenta Mad-698-R] Length = 495 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 94/277 (33%), Gaps = 93/277 (33%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA-----------GRT 51 + + YNG+ Y G + QK +++ ++E +F ++ A GRT Sbjct: 49 KIALKFTYNGADYSGLEFQKTPTTLP-TVEAVLFDALVHTRLIDPATGFEGCGWEKCGRT 107 Query: 52 DSGVHALRQV--------------------------------AHFDLVREWVPVILCKAL 79 D GV A QV L+ EW A Sbjct: 108 DRGVSAAGQVISLWVRSALGQARVRTSLEDANVMDVHPTGLEGDLALMGEWDETPTNAAR 167 Query: 80 NAYLKISD--------------TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 A + ++ TI ++ S V F ARFS R Y Y Sbjct: 168 PATPQATNELRYITLLNNVLPPTIRVIAWSPVGPDFSARFSCRYRHYKY----------- 216 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDF------------TTF-RSIHCQASSPIRTI 172 + P+ LD M+ AA LVG HDF TTF R I +P + Sbjct: 217 -----FFSPEGLDLAAMQDAADRLVGEHDFRNLCKLDPSKQLTTFARKILSARLNPAQ-- 269 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + L + ++ +FL+ Q+R + L LVG Sbjct: 270 ----ADGASTLYVLDLIGTAFLYNQVRHIMAVLFLVG 302 >gi|83317781|ref|XP_731310.1| tRNA-pseudouridine synthase I [Plasmodium yoelii yoelii str. 17XNL] gi|23491305|gb|EAA22875.1| tRNA-pseudouridine synthase I [Plasmodium yoelii yoelii] Length = 497 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF------DVNSF-GNLIEIRVVA 190 D + ++ ++ +G H+F FR I + + RTI+ F D+ NL + + Sbjct: 368 DIDKIKECSKLFIGYHNFECFRGI-LKGTEKQRTINTFCNIHFLDIYKLKDNLYQFIIQG 426 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FL+ IR VG+L VG G D++ AL + APP+GL Sbjct: 427 DRFLYHMIRIIVGTLIQVGVGILNFQDVKDALYNSKPLKVKLCAPPQGL 475 >gi|260817697|ref|XP_002603722.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae] gi|229289044|gb|EEN59733.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae] Length = 352 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 108/263 (41%), Gaps = 36/263 (13%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTDSGVH 56 ++ Y+G GY G QR + +I+ + A F G I H RTD GV Sbjct: 47 LLAYSGVGYMGMQRNQGFKTIEEDL-LAAFYKAGAIPKDHMDCMQKMHFQRCARTDKGVS 105 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISD----TISILNLSIVDKQFHARFSAIRRSY 112 A Q+ V + + +A KI+D +I ++ + F ++ + R+Y Sbjct: 106 AAGQI---------VSLKMYMIEDAVQKINDCLAESIRLIGIKRTTNGFDSKNACDARTY 156 Query: 113 LYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPI 169 +Y + T AP E + + + E + G H+F F S S+ Sbjct: 157 MYVLPTYSFAPTKEETEQDFRATDDV-MEKVNDVLSAYKGTHNFHNFTSGKKFKDPSAKR 215 Query: 170 RTIDHFDVNSF-GNLIE---IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 I+ +++F + IE I + +SF+ QIR +G + + G + LE+A Q Sbjct: 216 YIIESKCLDTFVRDDIEWTVISIKGQSFMIHQIRKMIGMMLAIVRGLAPRSMLERAWQ-- 273 Query: 226 DRKECG-PLAPPEGLYFDSVEYS 247 +C P AP GL D V + Sbjct: 274 -EGKCDIPKAPGLGLVLDKVHFD 295 >gi|327307008|ref|XP_003238195.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] gi|326458451|gb|EGD83904.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] Length = 614 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 77/219 (35%), Gaps = 58/219 (26%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSI-VDKQFHARF 105 G T SGV + +D + + +P I + LN L + I +L + F ARF Sbjct: 217 GDKNTQSGVSDTGEAKGWDDIADELPYI--QILNGAL--PEDIRVLAWCPHLPPDFDARF 272 Query: 106 SAIRRSYLY-------------RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 S +R Y Y R I R L + A LD E MR AAQ+ VG Sbjct: 273 SCRQRRYRYFFTQPAFCPTPGTRGIVRSPELKDDLSLARPREGWLDIEAMRKAAQYFVGS 332 Query: 153 HDFTTFRSIHCQAS----------------SPIRTIDHF--------------------- 175 HDF F + P RT F Sbjct: 333 HDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGPRNTGVPGS 392 Query: 176 --DVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 D+NS G + V +FL QIR VG L LVG G Sbjct: 393 INDINSAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQG 431 >gi|115442996|ref|XP_001218305.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114188174|gb|EAU29874.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1199 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 80 KVAVLLGYSGTGYKGMQLSDTEKTIEGELFTA-FVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E P I+ K +N K+S I + ++ + +K F A R Y Sbjct: 139 KGVHAAGNVVSLKLIVE-DPDIVQK-INE--KLSPQIRVWDILVANKSFSAYQMCDSRIY 194 Query: 113 LYRIIT 118 Y I T Sbjct: 195 EYLIPT 200 >gi|330835922|ref|XP_003292011.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum] gi|325077781|gb|EGC31472.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum] Length = 539 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 22/132 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVH----------GAGRT 51 + + Y+G+G++G K+ +I+ +IEKA+F + G I + + RT Sbjct: 129 FALCFGYDGTGFYGLSYNKDLKYKAIENAIEKALF-INGHIAPSNVGDLSRIKWSRSSRT 187 Query: 52 DSGVHALRQ-VAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 D GVH+L ++ F LV RE + +++N +L +++ +L+ + + K F AR Sbjct: 188 DKGVHSLSTLISCFILVDEKTNQREGLSKETIESINKHL--PESVRLLSGTRISKSFRAR 245 Query: 105 FSAIRRSYLYRI 116 R+Y Y + Sbjct: 246 RGVCERTYHYMV 257 >gi|268536920|ref|XP_002633595.1| Hypothetical protein CBG05472 [Caenorhabditis briggsae] gi|187035020|emb|CAP25947.1| hypothetical protein CBG_05472 [Caenorhabditis briggsae AF16] Length = 322 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 66/298 (22%), Positives = 112/298 (37%), Gaps = 54/298 (18%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQG----SIEKAIFLVTGE-------IVVVHGAGRT 51 RY I Y+GS + + G + ++ ++IF E + + RT Sbjct: 6 RYLFWIRYDGSKFPEMAKGGTGFGVMDLLNQTVSQSIFGPRREQHPEQKDKLKFSPSSRT 65 Query: 52 DSGVHALRQVAHFDLVREWVPVILC-----KALNAYLKISDTISILNLSIVDKQ-----F 101 D+ VHA+R + E+ + C + + + I D + +L I+D F Sbjct: 66 DAKVHAIRSSVICQVPLEFADLDKCPETKIQYMRTWKSIIDAANPGSLEILDAHSVSAGF 125 Query: 102 HARFSAIRRSYLYRIIT----------RQAPLAL---EKGRAWLIPKSLDCENMRIAAQH 148 R S R Y YR+ RQ P E+ AW +P E + A + Sbjct: 126 CIRRSVSYRKYTYRLAVCRSWDLWDTIRQEPSIACFSERDYAWRLPPGFSPERLLRAGKI 185 Query: 149 LVGRHDFTTF-----RSIHCQASSP----------IRTIDHFDV-NSFGNLIEIRVVARS 192 G +F R + SP + + + V N + + +VA+S Sbjct: 186 FEGEQVMGSFFKHTNREKRTEPISPSALKYIFYVGLSNGEAYSVENDIYDYYNVTIVAKS 245 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECG-PLAPPEGLYFDSVEY 246 F+ QIR + L + + + L+ + + + G P+APP+GLY V Y Sbjct: 246 FVREQIRRMISCLVNYSYDRIPLSTVNWLLKNPISSNFYDMGIPVAPPQGLYLTDVVY 303 >gi|312091557|ref|XP_003147023.1| hypothetical protein LOAG_11456 [Loa loa] gi|307757811|gb|EFO17045.1| hypothetical protein LOAG_11456 [Loa loa] Length = 236 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 14/125 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIV-----VVHGAGRTDSG 54 Y +++ Y G Y G Q QK+ +++G + KA+ ++ +I+ A RTD Sbjct: 104 YALLLAYQGKKYNGMQVQKDFPTVEGELFKAMAKCGYISEDDILSPVRFAFQRAARTDRS 163 Query: 55 VHALRQVAHFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L E L A LNA ++ + I ++ + + F A + +R+ Sbjct: 164 VSAARQMCSMRLAPENHEYFLKTASDKLNA--QLPEEIRVMGVRRATRSFKAHKNCDKRT 221 Query: 112 YLYRI 116 Y Y + Sbjct: 222 YSYTL 226 >gi|299469782|emb|CBN76636.1| tRNA Pseudouridine Synthase [Ectocarpus siliculosus] Length = 677 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 24/132 (18%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----------VVVHGAGRTD 52 + ++I Y G+ Y G Q K +I+ +E A++L G I V AGRTD Sbjct: 192 KVALLISYWGNNYQGLQINKGARTIEAELELALYLA-GTISKDNFGNPRKVSWSRAGRTD 250 Query: 53 SGVHALRQVAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 GVHA QV L RE V I N YL D I +++ K F +R Sbjct: 251 KGVHAAAQVISVKLTYLNDGERETVEKI-----NKYL--PDDIRAVDIRRAPKSFDSRTR 303 Query: 107 AIRRSYLYRIIT 118 R Y Y + T Sbjct: 304 CSGRRYEYIMPT 315 >gi|169854752|ref|XP_001834048.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130] gi|116504845|gb|EAU87740.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130] Length = 511 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 52/135 (38%), Gaps = 29/135 (21%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + +TI + S V F ARFS R Y Y + PK LD M+ Sbjct: 208 LPETIRVSAWSPVPSTFSARFSCNFRHYKY----------------FFTPKGLDIVRMQE 251 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE--------IRVVARSFLHT 196 AA L+G HDF C+ P + I F IE + +FL+ Sbjct: 252 AAGRLIGEHDFRNL----CKL-DPAKQITSFKRKVMSAHIERLNDNLHVFNLTGSAFLYH 306 Query: 197 QIRSFVGSLKLVGDG 211 Q+R + L L+G G Sbjct: 307 QVRHIMAILFLIGMG 321 >gi|307214388|gb|EFN89459.1| tRNA pseudouridine synthase A [Harpegnathos saltator] Length = 364 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 58/282 (20%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGE------IVVVHGAGRTDSGVHALRQ 60 Y G Y+G QR +I+ + A+ L+T E + A RTD GV A+RQ Sbjct: 4 YLGKNYYGMQRNPGMKTIEEDLVNALLKANLITTEQFENLRTINFQRAARTDKGVSAVRQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + L I +N +L D I + + V K F+++ R+Y Y I Sbjct: 64 IVSLKLPENPDKTI----INQFL--PDVIRVFGIKRVTKGFNSKNQCDARTYRY--IIPS 115 Query: 121 APLALEKGRAWLIPKSLDCE---------------NMRIAAQHL----------VGRHDF 155 A+E + + +D + R++ + L G H+F Sbjct: 116 FTFAMEDQSLLKMGEEVDINERIKQISTIDGEPYIDYRLSIESLNRLNSILKLFEGTHNF 175 Query: 156 TTFRSIHCQASSPI-----RTIDHFD-VNSFGN----LIEIRVVARSFLHTQIRSFVGSL 205 F S + P+ R I +F V++F + + + V +SF+ QIR V ++ Sbjct: 176 HNFTS----KTKPLDPRARRYIINFHCVDTFVSKGIEFVVLEVKGQSFMLHQIRKMVATV 231 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V + +A + K P+AP GL V Y Sbjct: 232 IAVARNIIPEETINEAFKTV--KMEIPIAPSLGLCLCHVHYD 271 >gi|56693277|ref|NP_001008603.1| tRNA pseudouridine synthase A [Danio rerio] gi|56269412|gb|AAH86827.1| Pseudouridine synthase 1 [Danio rerio] Length = 376 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 61/275 (22%), Positives = 106/275 (38%), Gaps = 48/275 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG------------AGR 50 + +++ Y+G GY+G QR S + ++ + + G + G + R Sbjct: 41 KVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRSAR 100 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GV A+ +V + W+ + + +NA+L I +L V F+++ + R Sbjct: 101 TDKGVSAVGRVVSLKV---WMIENILEKINAHL--PPRIRVLGCKRVTGGFNSKNNCYAR 155 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCEN--MRIAAQHL----------VGRHDFTTF 158 +Y Y + T PK + E+ R+ + L G H+F F Sbjct: 156 TYSYMLPT-----------VAFSPKDYNQEDTSFRLTSDTLQTVNRLFCLYKGTHNFHNF 204 Query: 159 RSIHC-QASSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 S + S +R I H + I V +SF+ QIR +G + V G Sbjct: 205 TSQKGHRDPSAMRYITHMSCGEPFIRKDVEFAVITVRGQSFMMHQIRKMIGLVIAVVKGY 264 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +EK+ + K AP GL + V + Sbjct: 265 VDEGVMEKSWGEE--KVGVSKAPGLGLVLERVHFD 297 >gi|302495964|ref|XP_003009994.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371] gi|291173519|gb|EFE29349.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371] Length = 409 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 81/220 (36%), Gaps = 68/220 (30%) Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSI-VDKQFHARFSAIR 109 T SGV + +D + + +P I + LN L + I +L + F ARFS + Sbjct: 16 TQSGVSDTGEAKGWDDIADELPYI--QILNGAL--PEDIRVLAWCPHLPPDFDARFSCRQ 71 Query: 110 RSYLY-------------RIITRQAPL----ALEKGR-AWLIPKSLDCENMRIAAQHLVG 151 R Y Y R I R + L +LE+ R WL D E MR AAQ+ VG Sbjct: 72 RRYRYFFTQPAFCPTPGARGIVRSSELKDDLSLERPREGWL-----DIEAMREAAQYFVG 126 Query: 152 RHDFTTFRSIHCQAS----------------SPIRTIDHF-------------------- 175 HDF F + P RT F Sbjct: 127 SHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGSRNTGVPE 186 Query: 176 ---DVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 D+N + G + V +FL QIR VG L LVG G Sbjct: 187 NINDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQG 226 >gi|148688059|gb|EDL20006.1| pseudouridine synthase 1, isoform CRA_d [Mus musculus] Length = 402 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 60 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 118 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 119 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 173 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 174 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFT 224 Query: 160 SIHCQASSPIR--TIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R ++ + F I+V +SF+ QIR VG + + G Sbjct: 225 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 284 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 285 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 316 >gi|112180395|gb|AAH21446.2| Pseudouridine synthase 1 [Mus musculus] Length = 423 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 81 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 195 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFT 245 Query: 160 SIHCQASSPIR--TIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R ++ + F I+V +SF+ QIR VG + + G Sbjct: 246 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 305 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 306 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 337 >gi|256087925|ref|XP_002580112.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665620|emb|CAZ36351.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 1304 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 71/200 (35%), Gaps = 60/200 (30%) Query: 48 AGRTDSGVHALRQVAHF---DLVREWVPVI-------------------LCKALNAYLKI 85 GRTD GV + QV L+ V VI ALN L Sbjct: 971 CGRTDRGVSGMCQVISLVSRSLIARGVGVIEDSGPCISERQDVPDEEMDYVSALNRNL-- 1028 Query: 86 SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRI 144 I +L S V F ARF +RSY Y P+S LD ++M Sbjct: 1029 PRDIRVLAWSPVSPDFSARFMCCKRSYEY-----------------YFPESGLDIKSMID 1071 Query: 145 AAQHLVGRHDFTTF-------------RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 A LVG HDF F R I S + + DH L I + A Sbjct: 1072 AGNRLVGVHDFRNFCASRIEKDTVTFIREIFEVVVSDVDSCDH-----HSKLCRISISAS 1126 Query: 192 SFLHTQIRSFVGSLKLVGDG 211 FL+ QIR + L +VG G Sbjct: 1127 GFLYHQIRFVMSILFMVGRG 1146 >gi|219122763|ref|XP_002181709.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406985|gb|EEC46923.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 421 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 84/345 (24%), Positives = 125/345 (36%), Gaps = 115/345 (33%) Query: 8 IEYNGSGYFGW-------QRQKNGS-----------------------SIQGSIEKAIFL 37 + Y+G ++GW R+ N + S+QG I+ + Sbjct: 75 VSYDGRQFYGWSSGNDPKDRESNAARPRYSTRSRRRRRNRGNYDGTVRSVQGEIQYCLSK 134 Query: 38 VTGEI----VVVHGAGRTDSGVHALRQVAHF-----------DLVREW------------ 70 V G I VVV G RTD GVHA +A D V +W Sbjct: 135 VYGNIDPQRVVVEGCSRTDKGVHARGMMAQIYCLHETTSPNDDPVVDWSIPGKRQPHPRN 194 Query: 71 ---------VPVILCK-ALNAYLKISDTISIL-------------NLSIVDKQFHARFSA 107 +P+ L K A + ISI+ N +I FH S Sbjct: 195 ATDTSYFTQLPMNLTKLAFTLNRMLPHDISIMGIAPTPHPHVTGCNPAISALPFHPTLSC 254 Query: 108 IRRSYLY--RIITRQAPLALEKGRAWLIPKSLDC---ENMRIAAQHLVGRHDFTTFRSIH 162 ++Y Y + TR P ++ W + +++ + A Q L G H+F F+ Sbjct: 255 RHKTYRYVVSVGTRADPT--KRLYVWHLDRAISTFSLDQAEQACQILQGSHNFAAFQGAP 312 Query: 163 CQASSPIRTIDHFDV-NSFGNLIEIRVVARS----------------FLHTQIRSFVGSL 205 + + I+ F + N+ LI IR+ +S FL+ IR VG++ Sbjct: 313 RGSDNKIK----FTMRNTTCQLISIRIQHQSTWLDTETYVVSVTGDRFLYKMIRFLVGTV 368 Query: 206 KLVGDGKWTSTDLEKALQAQDRK----ECGPLAPPEGLYFDSVEY 246 VG GK T ++ L Q R EC APP L + VEY Sbjct: 369 VGVGTGKLTLDNVAAMLLTQSRNNLQVEC---APPHALVLEHVEY 410 >gi|194696534|gb|ACF82351.1| unknown [Zea mays] Length = 257 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 51/130 (39%), Gaps = 23/130 (17%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I +L V FHARF+ + R Y Y KG LD M+ AA Sbjct: 22 IRVLGWCPVPADFHARFTCLSREYKY---------LFWKG-------DLDILEMQKAASK 65 Query: 149 LVGRHDFTTFRSIHCQASSPIR------TIDHFDVNSFGN-LIEIRVVARSFLHTQIRSF 201 +G HDF F + S R TI D S + L + + +FL Q+R Sbjct: 66 FIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCM 125 Query: 202 VGSLKLVGDG 211 V L L+G G Sbjct: 126 VAVLFLIGQG 135 >gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720] gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720] Length = 447 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 88/233 (37%), Gaps = 62/233 (26%) Query: 14 GYFGWQRQKNGSSIQG------SIEKAIFLVTGEIVVVHGA----------GRTDSGVHA 57 Y GW NG + Q ++E+ I + +V A GRTD GV A Sbjct: 91 AYMGWNY--NGLNFQNEPTPLPTVEEEILQAMTKAKLVPEADPASCNFSRCGRTDKGVSA 148 Query: 58 LRQV------------AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 L QV H D ++ + LNA L I+ + L F+ARF Sbjct: 149 LNQVISLDVRSALSKEEHADKEKDVKELPYLTILNALLPPDIRITAVCLR-PPPNFNARF 207 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI--- 161 S R Y Y L K+ LD + M+ AA G HDF F I Sbjct: 208 SCKYRHYKY-----------------LFKKTDLDVDLMQEAALKYEGPHDFRNFCKIDGS 250 Query: 162 -----HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 HC+ R I+HF + + + +++ A FL Q+R V L VG Sbjct: 251 KQITNHCREVYSAR-IEHFKDDFY--VFDLKGTA--FLWHQVRCMVAVLFSVG 298 >gi|149063709|gb|EDM14032.1| pseudouridine synthase 1, isoform CRA_c [Rattus norvegicus] Length = 402 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 60 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 118 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 119 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 173 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 174 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFT 224 Query: 160 SIHCQASSPIR--TIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R ++ + F I+V +SF+ QIR VG + + G Sbjct: 225 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 284 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 285 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 316 >gi|209876690|ref|XP_002139787.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris RN66] gi|209555393|gb|EEA05438.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris RN66] Length = 497 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 32/91 (35%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS------SIQGSIEKAIFLVTGEIVVVHGA--------- 48 YCM I YNG+ Y+G Q Q N + +I+ +E+A L+ ++V+ + Sbjct: 10 YCMAIGYNGTNYYGMQIQSNTNNCKYIETIESKLEEA--LIKSSMLVIRKSKNEYVNLKE 67 Query: 49 ---------------GRTDSGVHALRQVAHF 64 GRTD GVH++ Q+ F Sbjct: 68 FNSSSFLTSINWTRVGRTDKGVHSVCQIVSF 98 >gi|70906470|ref|NP_062674.2| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Mus musculus] gi|114152896|sp|Q9WU56|TRUA_MOUSE RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|112180429|gb|AAH34359.2| Pseudouridine synthase 1 [Mus musculus] gi|148688056|gb|EDL20003.1| pseudouridine synthase 1, isoform CRA_a [Mus musculus] Length = 423 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 106/274 (38%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 81 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 195 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFT 245 Query: 160 SIHCQASSPIRT------IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R + V I+V +SF+ QIR VG + + G Sbjct: 246 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 305 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 306 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 337 >gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis] gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis] Length = 464 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 85/252 (33%), Gaps = 74/252 (29%) Query: 14 GYFGWQRQKNGS--SIQGSIE--------KAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y GW S I ++E KA + + E GRTD GV A QV Sbjct: 87 SYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVKSRESCSYSRCGRTDKGVSAFGQVIS 146 Query: 64 FDLV-----------------------REWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 ++ + ++ LN L I +L + V+ Sbjct: 147 LNVRTNLDKGPGVILRQESSVGRDTKGKTMKEILYVDILNKVL--PKEIRVLAWAPVELD 204 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFR 159 F ARFS R Y Y L P + LD + M +A++ L G HDF F Sbjct: 205 FDARFSCSYRKYKY-----------------LFPSANLDIDLMNLASKKLEGEHDFRNFC 247 Query: 160 SIHCQASSPI---RTIDHFDVNSFGN-----------------LIEIRVVARSFLHTQIR 199 + A+ I R I F V N + E + +FL Q+R Sbjct: 248 KMDV-ANGVIQFTRNITSFKVQKVSNATYSAPGENKAKQRGYEMCEAVICGSAFLWHQVR 306 Query: 200 SFVGSLKLVGDG 211 + L +VG G Sbjct: 307 CMMSILLMVGQG 318 >gi|26354378|dbj|BAC40817.1| unnamed protein product [Mus musculus] Length = 393 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 51 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 165 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFT 215 Query: 160 SIHCQASSPIR--TIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R ++ + F I+V +SF+ QIR VG + + G Sbjct: 216 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 275 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 276 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 307 >gi|70906472|ref|NP_001020733.1| tRNA pseudouridine synthase A, mitochondrial isoform 3 [Mus musculus] gi|4455033|gb|AAD21041.1| pseudouridine synthase 1 [Mus musculus] gi|11464734|gb|AAG35308.1| pseudouridine synthase 1 [Mus musculus] gi|148688058|gb|EDL20005.1| pseudouridine synthase 1, isoform CRA_c [Mus musculus] Length = 393 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 51 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 165 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFT 215 Query: 160 SIHCQASSPIR--TIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R ++ + F I+V +SF+ QIR VG + + G Sbjct: 216 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 275 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 276 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 307 >gi|70906466|ref|NP_001020734.1| tRNA pseudouridine synthase A, mitochondrial [Rattus norvegicus] gi|182676393|sp|Q4KM92|TRUA_RAT RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|149063708|gb|EDM14031.1| pseudouridine synthase 1, isoform CRA_b [Rattus norvegicus] gi|171847186|gb|AAI61821.1| Pseudouridylate synthase 1 [Rattus norvegicus] Length = 423 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 106/274 (38%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 81 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 195 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFT 245 Query: 160 SIHCQASSPIRT------IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R + V I+V +SF+ QIR VG + + G Sbjct: 246 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 305 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 306 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 337 >gi|123976924|ref|XP_001330657.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis G3] gi|121897278|gb|EAY02404.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis G3] Length = 353 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 86/226 (38%), Gaps = 52/226 (23%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVIL-----------------CKALNAYLKISDTISI 91 GRTD+GV + V VR P L + LN L S I + Sbjct: 72 GRTDAGVSGVGNVISV-RVRSVCPTGLGSIPREGAKVQKEEMNYAQILNGILPPS--IRV 128 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 ++ V F+ARF R Y Y K++D M+ AA+HL+G Sbjct: 129 TGVAYVKPDFNARFDCATRGYRYFFHK--------------FDKNIDL--MKEAAEHLLG 172 Query: 152 RHDFTTF------RSIHCQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGS 204 HD+ F + HC +R I + ++ G + +V F+ QIR Sbjct: 173 EHDYRAFCKFSPDSTKHC-----VRKIYKCEFGDAGGGVWYFEIVGSGFIWHQIRCIASI 227 Query: 205 LKLVGDGKWTSTDLEKALQAQDR---KECGPLAPPEGLYFDSVEYS 247 L VG+G + + K L + + P+A PE L F + Y Sbjct: 228 LFAVGNG-FEKPSITKELLNTAKYPGRPNYPIADPEPLVFWNAGYE 272 >gi|331231235|ref|XP_003328281.1| pseudouridine synthase 3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307271|gb|EFP83862.1| pseudouridine synthase 3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 650 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 15/91 (16%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + +++ +L S V F ARFS R Y Y ++P A LD E M Sbjct: 312 LPNSVRVLAWSPVHHDFDARFSCQARHYKYFFSLYESPQA----------PGLDIEAMNR 361 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 AA L+G HDF F I P + + HF Sbjct: 362 AADRLIGEHDFRNFCKI-----DPSKQLAHF 387 >gi|74149634|dbj|BAE36440.1| unnamed protein product [Mus musculus] Length = 393 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 51 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 165 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFT 215 Query: 160 SIHCQASSPIR--TIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R ++ + F I+V +SF+ QIR VG + + G Sbjct: 216 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 275 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 276 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 307 >gi|297619849|ref|YP_003707954.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing protein [Methanococcus voltae A3] gi|297378826|gb|ADI36981.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Methanococcus voltae A3] Length = 271 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 34/204 (16%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVIL-----CKALNAYLKISDTISILNLSIVDK 99 ++ GRTD GV AL +DL +E P++ CK I +L +++ Sbjct: 44 LYYGGRTDLGVSALGNFVIYDLDKE--PILTHIYSKCKGFG--------IWVLGYQKINE 93 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF- 158 + + R Y Y L K A+ D + ++ ++ L+G H F Sbjct: 94 FPNVEY----RHYRY---------ILPKVDAY--GNFHDMDKIKKVSECLIGTHSFHNLS 138 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + + P+RTI V I + + +SFL +R +G + VG + T+ ++ Sbjct: 139 KRDKTKNRDPVRTIYDITVEDNEYFITLNIYGKSFLWNMVRKIIGLISNVGISEMTNEEI 198 Query: 219 EKALQA---QDRKECGPLAPPEGL 239 E+ + K P++ EGL Sbjct: 199 EEYMDKVFNPSIKVGSPISSAEGL 222 >gi|149063707|gb|EDM14030.1| pseudouridine synthase 1, isoform CRA_a [Rattus norvegicus] Length = 393 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 46/274 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + + G I HG Sbjct: 51 KIVLLMAYSGKGYHGMQRNL-GSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A + + E+ R++A+ L G H+F F Sbjct: 165 RTYCYMLPT----FAFAHKD-----RDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFT 215 Query: 160 SIHCQASSPIR--TIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R ++ + F I+V +SF+ QIR VG + + G Sbjct: 216 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 275 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + LE++ + K P AP GL + V + Sbjct: 276 PESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 307 >gi|159487841|ref|XP_001701931.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158281150|gb|EDP06906.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 287 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 100/290 (34%), Gaps = 90/290 (31%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA-------------GRTDSGVH 56 Y G + G+ RQ N + +IE +F + ++ A GRTD GV Sbjct: 19 YVGWAFQGFARQDN---TENTIEGVLFSALRKTKLIPEAAAKPISELAYSRCGRTDRGVS 75 Query: 57 ALRQVAHFDL---------------------VRE------WV------PVILCKALNAYL 83 AL QV L RE W P ++ KAL Sbjct: 76 ALGQVVALQLRSCARPGGGGLGYHDPSMCGPARESLQCPSWCVQEFDYPRLINKAL---- 131 Query: 84 KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 + IL + V F+AR ++Y+ SLD + MR Sbjct: 132 --PPEVRILGWTPVPADFNARCGGRAGEWVYQQ------------------HSLDIQAMR 171 Query: 144 IAAQHLVGRHDFTTF------------RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 AA H +G HDF F R I P+ T ++ + + V Sbjct: 172 TAAAHFIGEHDFRNFCKPDVATVRSFRRRILSFTVEPVTTS---AADAAHQVYALTVRGT 228 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGL 239 +FL Q+R L +VG G+ + + L +A RK +AP E L Sbjct: 229 AFLWHQVRCMAAILLMVGRGQEAPDVVARLLDVEACPRKPQYSMAPEEPL 278 >gi|295660198|ref|XP_002790656.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] gi|226281531|gb|EEH37097.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] Length = 600 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+GSGY G Q + +I+G + A F+ G I + RTD Sbjct: 107 KVAVLLGYSGSGYHGMQLSQTEKTIEGDLFTA-FVAAGAISKANATDPKKSSLVRCARTD 165 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ + +N +L S I + + + +K F + R Y Sbjct: 166 KGVHAAGNVVSLKLIVEDSNVV--QKINNHL--SPQIRVWGIEVTNKSFSSYQLCDSRVY 221 Query: 113 LYRIIT 118 Y I T Sbjct: 222 EYLIPT 227 >gi|328871318|gb|EGG19689.1| hypothetical protein DFA_00267 [Dictyostelium fasciculatum] Length = 568 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 19/127 (14%) Query: 6 MIIEYNGSGYFGWQ---RQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTD 52 M+ Y G+GY G + ++ +++ +E+A+FL +G I+ + + RTD Sbjct: 134 MLFAYVGTGYHGLEFHMTDQDYPTLENCLERALFL-SGMILPTNFGDPSRLNWRRSSRTD 192 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYL-----KISDTISILNLSIVDKQFHARFSA 107 GVH++ + +L + ++ + + Y+ + D + I+++ + K F R Sbjct: 193 KGVHSMSTIIKANLEIDRSRMLTPEKIADYVALINSNLPDALRIISMEMTKKSFDPRRQG 252 Query: 108 IRRSYLY 114 I R+Y Y Sbjct: 253 IARTYHY 259 >gi|255023069|ref|ZP_05295055.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-208] Length = 33 Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK 33 M RY II Y+GSG++G+Q Q N ++Q IEK Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEK 33 >gi|255088059|ref|XP_002505952.1| predicted protein [Micromonas sp. RCC299] gi|226521223|gb|ACO67210.1| predicted protein [Micromonas sp. RCC299] Length = 290 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 84/245 (34%), Gaps = 60/245 (24%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG-----------AGRTDSGVH 56 + Y G Y G+ Q ++E+A+F + ++ GRTD+GV Sbjct: 19 VMYAGWDYRGFASQGAERDGVRTVEEALFRALKRVRLIAPDATWKTCDYTRCGRTDAGVS 78 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLK--------------------ISDTISILNLSI 96 AL QV L R VP + L + I IL + Sbjct: 79 ALGQVVSARL-RCRVPRRDDDDDDDDLSETGRLHEGDEIDYPAVLNRALPRDIRILGWTY 137 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 V F ARF R Y Y W LD M AA VG HDF Sbjct: 138 VPPAFSARFDCDYRHYKYFFTD------------W---NGLDVRAMNEAASAFVGEHDFR 182 Query: 157 TF-----RSIHCQASSPIRTIDHFDV----NSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 F R++H + R ID V + I VV +FL Q+R L L Sbjct: 183 NFCKMDARNVH----NYRRRIDSCRVVLAAGEPPGVAHIEVVGTAFLWHQVRCIASVLFL 238 Query: 208 VGDGK 212 VG G+ Sbjct: 239 VGLGR 243 >gi|42572123|ref|NP_974152.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|332197678|gb|AEE35799.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 356 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 13/121 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 23 KVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTDK 82 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+ QV + + P+ LN+ L + I I V F ++ RR Y+ Sbjct: 83 GVSAVGQVVSGRFIVD--PLGFVNRLNSNL--PNQIRIFGYKHVTPSFSSKKFCDRRRYV 138 Query: 114 Y 114 Y Sbjct: 139 Y 139 >gi|240282351|gb|EER45854.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H143] Length = 612 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+GSGY G Q + +I+G + A F+ G I + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSETEKTIEGDLFTA-FVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ + +N +L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVEDPNVV--QKINGHL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRI 116 Y I Sbjct: 237 EYLI 240 >gi|325088485|gb|EGC41795.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H88] Length = 612 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+GSGY G Q + +I+G + A F+ G I + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSETEKTIEGDLFTA-FVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ + +N +L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVEDPNVV--QKINGHL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRI 116 Y I Sbjct: 237 EYLI 240 >gi|218192790|gb|EEC75217.1| hypothetical protein OsI_11484 [Oryza sativa Indica Group] Length = 722 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 17/129 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHG---------AGR 50 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + +G + R Sbjct: 73 RVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSSR 132 Query: 51 TDSGVHALRQVAHFDLV---REWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARF 105 TD GVH+L + + R W AL+ ++ + D + + ++ + F R Sbjct: 133 TDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRR 192 Query: 106 SAIRRSYLY 114 + R YLY Sbjct: 193 ECLYREYLY 201 >gi|225559412|gb|EEH07695.1| tRNA pseudouridine synthase [Ajellomyces capsulatus G186AR] Length = 612 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+GSGY G Q + +I+G + A F+ G I + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSETEKTIEGDLFTA-FVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ + +N +L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVEDPNVV--QKINGHL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRI 116 Y I Sbjct: 237 EYLI 240 >gi|325182026|emb|CCA16479.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 97 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 7/62 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVH 56 Y M I Y G+ + GWQRQ S S+Q IE ++ L E V V+ RTD+G H Sbjct: 24 YGMSIAYYGTDFIGWQRQPAASKPGFFSVQQIIEDSLSRALSKSERVNVNAVSRTDAGTH 83 Query: 57 AL 58 A+ Sbjct: 84 AV 85 >gi|224126927|ref|XP_002319961.1| predicted protein [Populus trichocarpa] gi|222858337|gb|EEE95884.1| predicted protein [Populus trichocarpa] Length = 445 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 21/131 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIFLVTGEIVVVHG---------AGR 50 + + + Y G+ Y G Q+Q + S I+G +E+AI+ G +G + R Sbjct: 33 KVALRVGYVGTDYRGLQKQHDQHSLLTIEGELERAIYEAGGIRESNYGNLNKISWARSSR 92 Query: 51 TDSGVHAL-------RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 TD GVH+L ++ + ++L K +N+YL D+I +L++ K F Sbjct: 93 TDKGVHSLATTITMKMEIPENAWKDDLYGMVLAKHVNSYL--PDSIRVLSILPAQKSFDP 150 Query: 104 RFSAIRRSYLY 114 R R Y Y Sbjct: 151 RRECDIRKYSY 161 >gi|328780691|ref|XP_624092.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis mellifera] Length = 389 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 112/287 (39%), Gaps = 54/287 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGS----IEKAIFLVTGEI-----VVVHGAGRTDSG 54 + M++ Y G Y G Q + +I+GS + KA F+ E + A RTD G Sbjct: 49 FVMVLGYLGKNYSGMQINRGIKTIEGSLLSALLKADFITKNEFEDLKEIKFQRAARTDKG 108 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+RQ+ L + + +N +L I + ++ V + F+++ R+Y Y Sbjct: 109 VSAVRQIVSLQLPNH----VNKEDINKHL--PKDIKVFDIKRVTRNFNSKNKCDARTYRY 162 Query: 115 RIIT-----------------------RQAPLALEKGRAW----LIPKSLDCENMRIAAQ 147 + T R L++ G+ + L LD N + Sbjct: 163 VLPTFALASEDPSFLQMDKEEEIDEEKRLEKLSMIDGKPYNEFRLNSDMLDKLNEILKL- 221 Query: 148 HLVGRHDFTTF----RSIHCQASSPI---RTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 G H+F F R + +A I R I+ F N+ + + V +SF+ QIR Sbjct: 222 -FEGTHNFHNFTSKIRPMDPRAKRYIVYFRCIETFIANNM-EFVVLEVQGQSFMLHQIRK 279 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V + + T ++ A + K P+AP GL V Y+ Sbjct: 280 MVSLIIGICRNIITIDFVKDAFSLE--KVDIPIAPGLGLSLHFVHYT 324 >gi|18411027|ref|NP_565126.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|6573728|gb|AAF17648.1|AC009978_24 T23E18.5 [Arabidopsis thaliana] gi|21592498|gb|AAM64448.1| unknown [Arabidopsis thaliana] gi|21703099|gb|AAM74492.1| At1g76120/T23E18_5 [Arabidopsis thaliana] gi|23308411|gb|AAN18175.1| At1g76120/T23E18_5 [Arabidopsis thaliana] gi|332197677|gb|AEE35798.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 463 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 13/121 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 23 KVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTDK 82 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+ QV + + P+ LN+ L + I I V F ++ RR Y+ Sbjct: 83 GVSAVGQVVSGRFIVD--PLGFVNRLNSNL--PNQIRIFGYKHVTPSFSSKKFCDRRRYV 138 Query: 114 Y 114 Y Sbjct: 139 Y 139 >gi|315928911|gb|EFV08168.1| tRNA pseudouridine synthase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 186 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 10/167 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA VA + Sbjct: 5 IIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAVASVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +V + L K LN + I I + V F RF R Y Y I + + Sbjct: 64 CGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHSSYSP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 PK D + VG+ D F C++ +T Sbjct: 121 FMASYVHFYPK-FDLDKANELLGFFVGKKDLKFF----CKSGGDNKT 162 >gi|315124345|ref|YP_004066349.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018067|gb|ADT66160.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 178 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 10/167 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA VA + Sbjct: 5 IIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAVASVE 63 Query: 66 LVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 +V + L K LN + I I + V F RF R Y Y I + + Sbjct: 64 CGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHSSYSP 120 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 PK D + VG+ D F C++ +T Sbjct: 121 FMASYVHFYPK-FDLDKANELLGFFVGKKDLKFF----CKSGGDNKT 162 >gi|301604562|ref|XP_002931922.1| PREDICTED: tRNA pseudouridine synthase A [Xenopus (Silurana) tropicalis] Length = 399 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 109/283 (38%), Gaps = 64/283 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGA----------G 49 + +++ Y+G GY G QR GSS +IE + +++G I H Sbjct: 56 KVVLLMAYSGKGYHGMQRNV-GSSQFKTIEDELVQALVLSGCIPDNHAEDMKKMSFQRCA 114 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N L I IL L V +F+++ S Sbjct: 115 RTDKGVSAAGQVVSLKI---WLIDNVVEKINENL--PSHIRILGLKRVTGRFNSKNSCDA 169 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A K EN R++ + L G +F F Sbjct: 170 RTYSYTLPT----FAFSHK-----DKEAQDENFRLSQETLNRVNELLALYKGTRNFHNFT 220 Query: 160 S---------------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 S +HC+ F L I+V +SF+ QIR +G Sbjct: 221 SQKGPRDPSAKRYIMEMHCEPP--------FQQGGL-ELAVIKVKGQSFMMHQIRKMIGL 271 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + V G ++ +E++ + K P AP GL + V + Sbjct: 272 VIAVVKGFAPTSIIERSW--GEEKVDIPKAPGLGLVLERVHFE 312 >gi|242776451|ref|XP_002478840.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC 10500] gi|218722459|gb|EED21877.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC 10500] Length = 580 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + ++I Y+G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 75 KVAVMIGYSGTGYHGMQLSPTEKTIEGDL-FAAFVAAGAISKANAADPKKSSLVRCARTD 133 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ K +N L S I + IV K F R Y Sbjct: 134 RGVHAAGNVVSLKLIVEDPDIV--KKINDNL--SPQIRVWGYEIVTKGFSCYQLCDSRMY 189 Query: 113 LYRIIT 118 Y I T Sbjct: 190 EYLIPT 195 >gi|225459791|ref|XP_002284797.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 558 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 13/116 (11%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVHALRQ 60 Y G GY G Q+ +I+G +E+A+F G + RTD GV A+ Q Sbjct: 47 YCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQ 106 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 V + P L + LN+ L I I V F+A+ RR Y+Y I Sbjct: 107 VVSGRFYID--PPGLVERLNSNL--PPQIRIFGFKRVTASFNAKKFCDRRRYVYLI 158 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 148 HLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFGNL-----IEIRVVARSFLHTQIRSF 201 H VG H+F F + I + S R I FD N+ + ++ VV +SF+ QIR Sbjct: 374 HYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKM 433 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +G + + LE AL +D P AP GLY D +S Sbjct: 434 IGLAVAIMRNVAPESLLETAL-LKDVNINVPTAPEVGLYLDECFFS 478 >gi|125586190|gb|EAZ26854.1| hypothetical protein OsJ_10771 [Oryza sativa Japonica Group] Length = 516 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 17/129 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHG---------AGR 50 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + +G + R Sbjct: 73 RVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSSR 132 Query: 51 TDSGVHALRQVAHFDLV---REWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARF 105 TD GVH+L + + R W AL+ ++ + D + + ++ + F R Sbjct: 133 TDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRR 192 Query: 106 SAIRRSYLY 114 + R YLY Sbjct: 193 ECLYREYLY 201 >gi|115452911|ref|NP_001050056.1| Os03g0338600 [Oryza sativa Japonica Group] gi|108708043|gb|ABF95838.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa Japonica Group] gi|113548527|dbj|BAF11970.1| Os03g0338600 [Oryza sativa Japonica Group] Length = 516 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 17/129 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHG---------AGR 50 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + +G + R Sbjct: 73 RVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSSR 132 Query: 51 TDSGVHALRQVAHFDLV---REWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARF 105 TD GVH+L + + R W AL+ ++ + D + + ++ + F R Sbjct: 133 TDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRR 192 Query: 106 SAIRRSYLY 114 + R YLY Sbjct: 193 ECLYREYLY 201 >gi|67624003|ref|XP_668284.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54659475|gb|EAL38050.1| hypothetical protein Chro.80602 [Cryptosporidium hominis] Length = 210 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 19/157 (12%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK--SLDCENMRIAA 146 I ++ V F ARF R Y Y PL E+ + PK M IAA Sbjct: 12 IRVIGYCEVRPDFSARFDCEYRLYKYFF-----PLNHERTKISKFPKIPPEQVPLMDIAA 66 Query: 147 QHLVGRHDFTTFRSIHC---QASSPIRTIDHFDVNSFGNLIEIRVVA------RSFLHTQ 197 + +G HD+ F + + + IRTI FD+N E R A +FL Q Sbjct: 67 KQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDINFVD---ENRTFAVATIKGSAFLWHQ 123 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +R +G L +G K+ + + L ++K L+ Sbjct: 124 VRLMMGILFEIGQQKFNPEVITQMLTDVEQKNIAELS 160 >gi|320583409|gb|EFW97622.1| tRNA pseudouridine synthase [Pichia angusta DL-1] Length = 491 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 15/121 (12%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTDSGVHA 57 + Y G+GY G Q +I+G + A F+ G I + A RTD GVHA Sbjct: 85 LSYCGTGYHGMQMNPPAKTIEGDLFDA-FVKAGAISKNNSNDLKKSSFMRAARTDKGVHA 143 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V L+ E L + +N+YL D I V+K F R R Y Y + Sbjct: 144 AGNVISLKLIIE--DPDLVEKINSYL--PDQIRFWGYERVNKSFDCRKVCSSRIYEYLMP 199 Query: 118 T 118 T Sbjct: 200 T 200 >gi|327283197|ref|XP_003226328.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Anolis carolinensis] Length = 406 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 108/273 (39%), Gaps = 50/273 (18%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGA----------GRTD 52 +++ Y+G GY G QR S + +IE + L +G I HG RTD Sbjct: 65 LLVAYSGKGYHGMQRNVGNSQFK-TIEDDLVLALIQSGCIPENHGEDMKKMSFQRCARTD 123 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A Q+ + W+ + + +N +L I IL L V F+++ R+Y Sbjct: 124 KGVSAAGQIVSLKV---WLIEDILQKINNHL--PPHIRILGLKRVTGGFNSKNKCDARTY 178 Query: 113 LYRIIT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--------- 160 Y + T + L ++L N +A G H+F F S Sbjct: 179 SYMLPTFAFAHKDCDFQDHTFHLNTETLATVNRLLAG--YKGTHNFHNFTSQKGPKDPSA 236 Query: 161 ------IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 ++C+ +R F V ++V +SF+ QIR +G + + G + Sbjct: 237 KRYIMEMYCEEPF-VRQGMEFAV--------MKVKGQSFMMHQIRKMIGLVIAIVKGYAS 287 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +E++ + K P AP GL + V + Sbjct: 288 ESIMEQSWGEE--KVDVPKAPGLGLVLERVHFE 318 >gi|323454992|gb|EGB10861.1| hypothetical protein AURANDRAFT_62396 [Aureococcus anophagefferens] Length = 321 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 23/152 (15%) Query: 26 SIQGSIEKAIFL-VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV------ILCKA 78 ++QG + A+ G + GA RTD+GVHA Q AH DL P+ +L Sbjct: 74 TVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADL--PVAPLGGAPLELLEHQ 131 Query: 79 LNAYLKISDTISILNLSIVDKQFHAR--------FSAIRRSYLYRIITRQA---PLA-LE 126 +N L + L + K + AR +A + Y YR+ R+ PL L Sbjct: 132 INRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLY 191 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 +G +++D + A VG HDF F Sbjct: 192 RGHVAY--RAVDFGRLDDALACFVGEHDFAAF 221 >gi|328861209|gb|EGG10313.1| hypothetical protein MELLADRAFT_76951 [Melampsora larici-populina 98AG31] Length = 568 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 14/88 (15%) Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 +E +P I LN+ L ++I ++ S V +F ARFS R Y Y ++ L Sbjct: 236 QEELPYI--SILNSLL--PESIKVIAWSPVSTEFDARFSCKGRHYKYFFTKFESDLN--- 288 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDF 155 +SLD E MR A+ L+G HDF Sbjct: 289 -------QSLDIEMMREGAKKLIGEHDF 309 >gi|299470490|emb|CBN78481.1| pseudouridylate synthase, putative [Ectocarpus siliculosus] Length = 743 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 35/188 (18%) Query: 3 RYCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTGEIVVVHG---------AGR 50 + +++ Y G+ + GWQ+ +N +++G +E A++ +G R Sbjct: 30 KVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSR 89 Query: 51 TDSGVHALRQVAHFDLVREWVP--VILCKALNAY------LKISDTISILNLSIVDKQFH 102 TD GVHA + VA L+ +P ++ Y K+ D I ++S V K F Sbjct: 90 TDKGVHASKTVAAAKLL---LPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFR 146 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 R R Y Y + R+ L+P R + VG H F + S Sbjct: 147 GREECTLREYTY-YLPRE-----------LLPDDEALGKFRELLKLFVGTHSFHNYASTK 194 Query: 163 CQASSPIR 170 + +R Sbjct: 195 GRQLKEVR 202 >gi|218191324|gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indica Group] Length = 581 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 50 KVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTDK 109 Query: 54 GVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV R +V P + LNA L + I V F+A+ RR Y Sbjct: 110 GVSAAAQVVSG---RFYVDPPVFTDRLNAQL--APQIRAFGYVRVTNSFNAKKFCDRRRY 164 Query: 113 LY 114 +Y Sbjct: 165 VY 166 >gi|226293711|gb|EEH49131.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18] Length = 597 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+GSGY G Q + +I+G + A F+ G I + RTD Sbjct: 135 KVAVLLGYSGSGYHGMQLSQTEKTIEGDLFTA-FVAAGAISKANATDPKKSSLVRCARTD 193 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GVHA V L+ E V+ + +N +L S I + + + +K ++ R + + Sbjct: 194 KGVHAAGNVVSLKLIVEDSDVV--QKINNHL--SPQIRVWGIEVTNKSYNQRQAEV 245 >gi|147780612|emb|CAN69118.1| hypothetical protein VITISV_031845 [Vitis vinifera] Length = 559 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + + Y G GY G Q+ +I+G +E+A+F G + RTD Sbjct: 28 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDK 87 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+ QV + P L + LN+ L I I V F+A+ RR Y+ Sbjct: 88 GVSAVGQVVSGRFYID--PPGLVERLNSNL--PPQIRIFGFKRVTASFNAKKFCDRRRYV 143 Query: 114 YRI 116 Y I Sbjct: 144 YLI 146 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 148 HLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFGNL-----IEIRVVARSFLHTQIRSF 201 H VG H+F F + I + S R I FD N+ + ++ VV +SF+ QIR Sbjct: 375 HYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKM 434 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +G + + LE AL +D P AP GLY D +S Sbjct: 435 IGLAVAIMRNVAPESLLETAL-LKDVNINVPTAPEVGLYLDECFFS 479 >gi|167383737|ref|XP_001736651.1| tRNA pseudouridine synthase A [Entamoeba dispar SAW760] gi|165900832|gb|EDR27064.1| tRNA pseudouridine synthase A, putative [Entamoeba dispar SAW760] Length = 403 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 59/272 (21%), Positives = 109/272 (40%), Gaps = 40/272 (14%) Query: 5 CMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSG 54 +I Y G GYFG N +I+G IE A++ + V RTD G Sbjct: 46 AVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDKG 105 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A + + + + + +N++L +TI I ++ V F+A+ R+Y Y Sbjct: 106 VSAANNLISLKMGLDGNYI---ERINSFL--PETIRIQDVVKVSHSFNAKTRVDSRTYEY 160 Query: 115 --------RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT--TFRSIHCQ 164 +I + + +E P+ D + + V H+F TF + + Sbjct: 161 IFPSYAIQKIDSEHPEINVEYN-----PQQEDVDYFNSVISNYVKTHNFQNYTFNTKETK 215 Query: 165 ASSP-----IRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 A S I ++ V G N+I + + +SF+ QIR +G ++ + + + Sbjct: 216 ADSKSNNRYIISMSAQLVQRNGLNVIAVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQM 275 Query: 219 EKALQAQ----DRKECGPLAPPEGLYFDSVEY 246 + ++ + + P AP GL+ D + Sbjct: 276 NEIMKTSFTLINWRSVIPTAPAHGLFLDQCHF 307 >gi|115447813|ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group] gi|50251324|dbj|BAD28300.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group] gi|50252138|dbj|BAD28134.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group] gi|113537217|dbj|BAF09600.1| Os02g0668400 [Oryza sativa Japonica Group] Length = 581 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 50 KVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTDK 109 Query: 54 GVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV R +V P + LNA L + I V F+A+ RR Y Sbjct: 110 GVSAAAQVVSG---RFYVDPPVFTDRLNAQL--APQIRAFGYVRVTNSFNAKKFCDRRRY 164 Query: 113 LY 114 +Y Sbjct: 165 VY 166 >gi|50287019|ref|XP_445939.1| hypothetical protein [Candida glabrata CBS 138] gi|74637780|sp|Q6FV05|PUS1_CANGA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49525245|emb|CAG58858.1| unnamed protein product [Candida glabrata] Length = 549 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 21/128 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGR 50 MI YC G+GY G Q +I+ ++ KA F+ G I + A R Sbjct: 92 MIGYC------GTGYHGMQYNPPNPTIEAALFKA-FVDAGAISKANSNDLKKNNFMRAAR 144 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA + ++ E P I+ K +NA L + I I ++ V+K F R R Sbjct: 145 TDKGVHAGGNLISLKMIIE-DPEIMDK-INANL--PEGIRIWDIERVNKAFDCRKMCSSR 200 Query: 111 SYLYRIIT 118 Y Y + T Sbjct: 201 WYEYLLPT 208 >gi|159118829|ref|XP_001709633.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803] gi|157437750|gb|EDO81959.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803] Length = 531 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 45/189 (23%) Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 +++ +TI +L + VD+ F AR S R Y+Y + E G SL+ M Sbjct: 236 MRLPETIRVLGWAPVDENFSARHSTSSRRYVY--------MFGEVG-------SLNIRRM 280 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR--------------- 187 A LVG HD FR+I C+ S + +I F+ F +EI Sbjct: 281 AEACTKLVGFHD---FRNI-CKPS--LDSIKTFERVIFSCFLEIDGQPYDCENDRMAMKE 334 Query: 188 -------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEG 238 V +FL+ QIR L +G + + L + K P+AP E Sbjct: 335 NSTLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNVEQFPGKPDYPIAPGEL 394 Query: 239 LYFDSVEYS 247 L F+ EY+ Sbjct: 395 LLFERAEYT 403 >gi|320532726|ref|ZP_08033515.1| hypothetical protein HMPREF9057_01391 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135064|gb|EFW27223.1| hypothetical protein HMPREF9057_01391 [Actinomyces sp. oral taxon 171 str. F0337] Length = 57 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Sbjct: 1 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTCALATVVREPVRLTVAGRTDAGVHA 57 >gi|194697948|gb|ACF83058.1| unknown [Zea mays] Length = 516 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 17/129 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHG---------AGR 50 R + I Y G+ Y G Q+Q+ S+I+ +E AIF G + +G + R Sbjct: 78 RVVLRIGYVGTDYRGLQKQQELGVDSTIESVLESAIFKSGGILESNYGKLQKIGWERSSR 137 Query: 51 TDSGVHALRQVAHFDLV---REWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARF 105 TD GVH+L + + R W AL +++ + D + + ++ + F R Sbjct: 138 TDKGVHSLATMISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVRR 197 Query: 106 SAIRRSYLY 114 + R Y Y Sbjct: 198 ECLYREYFY 206 >gi|296423394|ref|XP_002841239.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637475|emb|CAZ85430.1| unnamed protein product [Tuber melanosporum] Length = 483 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 93/267 (34%), Gaps = 71/267 (26%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVVVHG------------------ 47 I Y G Y G++ N + +IE+ IF L+ +V +G Sbjct: 30 IAYLGGNYTGFEYHANSPNTTNTIEEHIFKALLKARLVPCNGIEGEEETVLGWPGDEVAE 89 Query: 48 ---AGRTDSGVHALRQV------------------------------AHFDLVREWVPVI 74 GRTD+GV A QV FD ++ +P Sbjct: 90 YSKCGRTDTGVSAFGQVIGVRVRSNRPLPKKPTDDVAEEGGEEGKEKTEFDDEKDELP-- 147 Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 + LN L D + F ARF+ +R Y Y T A + Sbjct: 148 YPQILNRLLP-KDIRVLAWCPHPPPTFSARFNCQQRHYRY-FFTNPAIVPSPNSTV---- 201 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDV--------NSFGNLI 184 +LD + MR AA+ VG HDF F + Q + R I H D+ N+ + Sbjct: 202 GNLDIDKMREAAKLYVGDHDFRNFCKLDASKQITRFDRVIHHADIVELPQSSPNNNPKVY 261 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDG 211 + +FL Q+R + L L+ G Sbjct: 262 YFELHGSAFLWHQVRHMIAILFLIAQG 288 >gi|150400596|ref|YP_001324362.1| tRNA pseudouridine synthase A [Methanococcus aeolicus Nankai-3] gi|150013299|gb|ABR55750.1| tRNA pseudouridine synthase A [Methanococcus aeolicus Nankai-3] Length = 310 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 35/249 (14%) Query: 4 YCMIIEYNGS--GYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 Y + I Y+G+ G+ +KN I ++ K ++ E + GRTD+GV AL Sbjct: 39 YILKIAYDGNNDGFQSHPHKKNNVCDIIINALLKCGYMDKEETKPLLRGGRTDNGVLALG 98 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 +L +E P++ + Y K+ T + +L S + + ++ R Y Y Sbjct: 99 NFIIVNLNQE--PILS----HVYAKLKYTGVWVLGYSKISELPEIKY----RHYKY---- 144 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRI-AAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFD 176 ++P N+ I A L+G H F + + + +P+RTI Sbjct: 145 -------------ILPNEGQNINLMIEGANKLIGTHSFHNLSKRDNTKNKNPLRTIYDIK 191 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I I + ++FL +R V +L VG ++K L + P AP Sbjct: 192 IKENDFFITIDIFGKNFLWNMVRRIVTALSEVGKENKPLNWIDKLLDINHTEGVAP-APA 250 Query: 237 EGLYFDSVE 245 GL V+ Sbjct: 251 NGLILVDVK 259 >gi|67481869|ref|XP_656284.1| tRNA pseudouridine synthase [Entamoeba histolytica HM-1:IMSS] gi|56473473|gb|EAL50898.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS] Length = 401 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 59/272 (21%), Positives = 109/272 (40%), Gaps = 40/272 (14%) Query: 5 CMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSG 54 +I Y G GYFG N +I+G IE A++ + V RTD G Sbjct: 44 AVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDKG 103 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A + + + + + +N++L +TI I ++ V F+A+ R+Y Y Sbjct: 104 VSAANNLISLKMGLDGNYI---ERINSFL--PETIRIQDVVKVSHSFNAKTRVDSRTYEY 158 Query: 115 --------RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT--TFRSIHCQ 164 +I + + +E P+ D + + V H+F TF + + Sbjct: 159 IFPSYAIQKIDSEHPEINVEYN-----PQQEDIDYFNSVISNYVKTHNFQNYTFNTKETK 213 Query: 165 ASSP-----IRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 A S I ++ V G N+I + + +SF+ QIR +G ++ + + + Sbjct: 214 ADSKSNNRYIISMSAQLVQRNGLNVIAVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQM 273 Query: 219 EKALQAQ----DRKECGPLAPPEGLYFDSVEY 246 + ++ + + P AP GL+ D + Sbjct: 274 NEIMKTSFTLINWRSVIPTAPAHGLFLDQCHF 305 >gi|50303379|ref|XP_451631.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74637053|sp|Q6CWQ8|PUS1_KLULA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49640763|emb|CAH02024.1| KLLA0B02244p [Kluyveromyces lactis] Length = 553 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 21/128 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGR 50 MI YC G+GY G Q +I+ + +A F+ G I + A R Sbjct: 104 MIGYC------GTGYHGMQYNPPNDTIEKELFEA-FVRAGAISKANSTDLKKNGFQRAAR 156 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V L+ E P + K N ++ D I + ++S V+K F R R Sbjct: 157 TDKGVHAGGNVISLKLIIE-DPEVKEKINN---ELPDQIRVWDISRVNKAFDCRKMCSSR 212 Query: 111 SYLYRIIT 118 Y Y + T Sbjct: 213 WYEYLLPT 220 >gi|328772887|gb|EGF82924.1| hypothetical protein BATDEDRAFT_33866 [Batrachochytrium dendrobatidis JAM81] Length = 580 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-----GEIVVVHGAGRTDSGVH 56 +R ++ YNG+G+ +R K +I+G++ + + + A T++G H Sbjct: 23 VRLAILYGYNGTGFDALERTKGEVTIEGTLLAVLASLLSADGKATFTNISRASTTEAGEH 82 Query: 57 ALRQVAHFDLVREWVPVIL--CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A +QV F+ P+IL +A+N L S + + + V F AR + R+Y + Sbjct: 83 ASKQVVSFE-THAPTPIILPAVEAVNKLLPSS--MRVFRIIPVASDFSARRTCEARTYEF 139 Query: 115 RIIT 118 I T Sbjct: 140 LIPT 143 >gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans] gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans] Length = 443 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 89/240 (37%), Gaps = 50/240 (20%) Query: 14 GYFGWQRQKNGSSIQG------SIEKAIFLVTGEIVVVHG----------AGRTDSGVHA 57 Y GW NG +IQ ++E I +V GRTD GV A Sbjct: 94 AYLGWNY--NGLAIQKEPTPLPTVEGTILEAMNACKLVPSMVPQDYNFSRCGRTDKGVSA 151 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDK------------QFHARF 105 + QV + N +I D I ILN + D F ARF Sbjct: 152 MNQVISLHVRSNLTREEQQDEENDGREI-DYIHILNQLLPDDIRISAVCLRPPTNFDARF 210 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-- 163 S R Y Y L + G LD + M AA+ G HDF F + Sbjct: 211 SCQYRHYRY--------LFHKDG--------LDIKKMEEAARMYEGEHDFRNFCKLDGSK 254 Query: 164 QASSPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 Q ++ R I+ + S I + ++ +FL Q+R + +L L+G G +T L+ + Sbjct: 255 QINNYKRNIERSRIISLSEDIYCLDLIGSAFLWHQVRCMMANLFLIGQGLEDTTLLKDLM 314 >gi|154418432|ref|XP_001582234.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121916468|gb|EAY21248.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 345 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 112/266 (42%), Gaps = 44/266 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVH-----GAGRTDSGVH 56 ++ Y G+ Y G Q+ + +++ + +A+ FL ++ A RTD+GVH Sbjct: 31 LLYRYIGTQYHGLQQNIDTHTVEKELFQALISAGFLSDQANCNLNRIKWSEASRTDAGVH 90 Query: 57 ALRQVAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A QV F ++ + +N L + I I+ + +QF+A+ A R+Y + Sbjct: 91 ACAQVLSFKASGLKGICIADIPDLINKQLPRTSDIEIITCITLRRQFYAQKFAESRNYNF 150 Query: 115 RIITR----QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 + T + L R ++P + N H+FT+ +S AS+P Sbjct: 151 LLPTNAFSSNSIEHLNYLRTSILPLFIGWLNY----------HNFTSNKS----ASNP-S 195 Query: 171 TIDHFDVNSFGNLIEIRVV--------ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 ++ DV +F + E+ V SF+ QIR + ++ + ++++ L Sbjct: 196 SMRKIDVFTFTDPFEVEGVEFVLFTIHGESFMLNQIRKMIATVISASHNYIGAEEVKRCL 255 Query: 223 QAQ--DRKECGPLAPPEGLYFDSVEY 246 + K C P +GL D V+Y Sbjct: 256 SEEGWSIKMC----PGDGLMLDHVDY 277 >gi|255719542|ref|XP_002556051.1| KLTH0H03894p [Lachancea thermotolerans] gi|238942017|emb|CAR30189.1| KLTH0H03894p [Lachancea thermotolerans] Length = 546 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + ++I Y G+GY G Q +I+ + +A F+ G I + A RTD Sbjct: 76 KVAVMIGYCGTGYHGMQYNPPTPTIEAELFRA-FVEAGAISQANSKDLKKSGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E P I+ K +N+ K+ + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNVVSLKLIIE-DPDIIAK-INS--KLPEGIRVWDIERVNKAFDCRKLCGSRWY 190 Query: 113 LYRIIT 118 Y + T Sbjct: 191 EYLLPT 196 >gi|289742875|gb|ADD20185.1| pseudouridylate synthase [Glossina morsitans morsitans] Length = 444 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 100/262 (38%), Gaps = 64/262 (24%) Query: 15 YFGWQRQKNGSSIQ----GSIEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVA 62 YFGW Q G + Q +IE +F ++ H GRTD V A QV Sbjct: 63 YFGWDYQ--GFACQEDSNNTIEFHLFKALTRTCLIESRSSANYHRCGRTDKKVSAFCQVI 120 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILN------------LSIVDKQFHARFSAIRR 110 DL R P + K D I+N + I + F ARF I R Sbjct: 121 SIDL-RSKFPEKQQFEESCLEKEIDYCGIMNRVLPKNIRCISWMPIRNHLFSARFDCITR 179 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRS-----IHCQ 164 +Y Y PK +L+ M+ A + L+ RH T FR+ +H Sbjct: 180 TYRY-----------------FFPKGNLNITAMQDACK-LLQRH--TDFRNLCKMDVHNG 219 Query: 165 ASSPIRTIDHFDV------NSFGN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 ++ +R I+ +V N N + + + A +FL QIR + L L+G K Sbjct: 220 VTNYVRHIEAANVRLCPHQNESKNKGYAMHYLEIKANAFLWHQIRCIMTVLLLIGQEKEE 279 Query: 215 STDLEKALQAQDRKECGPLAPP 236 + + + L ++ C P P Sbjct: 280 PSVINELLNV-EKNPCKPQYTP 300 >gi|164661239|ref|XP_001731742.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966] gi|159105643|gb|EDP44528.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966] Length = 226 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 13/128 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----------VVVHGAGRTD 52 + + Y G+ Y G Q +I+G I +A F G + V + A RTD Sbjct: 78 KVALFFGYCGTDYSGLQVNPGVKTIEGDIFEA-FCRAGAVSKENAVNPNKVQLQRAARTD 136 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRR 110 GVHA + L+ + + + L Y+ + D I I + V F+AR S R Sbjct: 137 RGVHAAGNLLTLKLILDPPNLPPNQTLTTYVNSLLPDQIRIWGMRRVQSAFNARTSCDSR 196 Query: 111 SYLYRIIT 118 Y Y + T Sbjct: 197 LYEYLLPT 204 >gi|327353057|gb|EGE81914.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ATCC 18188] Length = 610 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+GSGY G Q +I+G + A F+ G I + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSPTEKTIEGDLFTA-FVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ + +N L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVEDSDIV--QKINEQL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRIIT 118 Y I T Sbjct: 237 EYLIPT 242 >gi|239606367|gb|EEQ83354.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ER-3] Length = 596 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+GSGY G Q +I+G + A F+ G I + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSPTEKTIEGDLFTA-FVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ + +N L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVEDSDIV--QKINEQL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRIIT 118 Y I T Sbjct: 237 EYLIPT 242 >gi|308477475|ref|XP_003100951.1| hypothetical protein CRE_16900 [Caenorhabditis remanei] gi|308264295|gb|EFP08248.1| hypothetical protein CRE_16900 [Caenorhabditis remanei] Length = 322 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 54/249 (21%), Positives = 91/249 (36%), Gaps = 43/249 (17%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREW-----VPVILCKALNAYLKISD-----TIS 90 E + + RTD+ VHA+R + E+ P I + + D ++ Sbjct: 55 ECLKFSPSSRTDAKVHAIRNSVICQIPLEYSELDKTPEIKADYMKKWKSTIDAANPGSLV 114 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIIT----------RQAPLAL---EKGRAWLIPKSL 137 I ++ V F R S R Y YR+ RQ P E+ AW +P Sbjct: 115 IRDVHSVSAGFCIRRSVSYRKYTYRLAVCRSWELWESIRQEPSIACFSERDYAWRLPPGF 174 Query: 138 DCENMRIAAQHLVGRHDFTTF-------RSIHCQASSPIRTIDHFDV---------NSFG 181 E + A + G +F + S ++ I H + N Sbjct: 175 SPERLLTAGRRFEGEQVMGSFFKHTNREKRFEPITPSALKYILHVGLSNGEAYSINNDIY 234 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECG-PLAPPE 237 + + +VA+SF+ QIR + L + ++ L + + + G P+APP+ Sbjct: 235 DYYNVTIVAKSFVREQIRRMMSCLVNYSYDRIPLATVDWLLNNPISSNFFDMGIPIAPPQ 294 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 295 GLFLTDVVY 303 >gi|14318522|ref|NP_116655.1| Deg1p [Saccharomyces cerevisiae S288c] gi|399356|sp|P31115|PUS3_YEAST RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=Depressed growth-rate protein DEG1; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|836755|dbj|BAA09239.1| depressed growth-rate protein [Saccharomyces cerevisiae] gi|51013845|gb|AAT93216.1| YFL001W [Saccharomyces cerevisiae] gi|285811895|tpg|DAA12440.1| TPA: Deg1p [Saccharomyces cerevisiae S288c] Length = 442 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 93/244 (38%), Gaps = 47/244 (19%) Query: 10 YNGSGYFGWQRQKNGS---SIQGSIEKAIF---LVTGEIVVVHG---AGRTDSGVHALRQ 60 Y G Y G QK + +++G+I +A+ LV ++ + GRTD GV A+ Q Sbjct: 100 YLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQ 159 Query: 61 VAHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 V D + + LN L IS + L F ARFS + Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLR-PPPNFDARFSCV 218 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QAS 166 R Y Y + G K+L+ E M AA + VG DF F + Q + Sbjct: 219 HRHYKY----------IFNG------KNLNIEKMSKAASYFVGERDFRNFCKLDGSKQIT 262 Query: 167 SPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTS------TDLE 219 + RTI + +V +FL Q+R + L LVG TD+E Sbjct: 263 NFKRTIISSKILPLSETFYCFDLVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIE 322 Query: 220 KALQ 223 K Q Sbjct: 323 KTPQ 326 >gi|308161029|gb|EFO63491.1| Pseudouridylate synthase, putative [Giardia lamblia P15] Length = 515 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 76/189 (40%), Gaps = 45/189 (23%) Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 +++ +TI +L + VD+ F AR S R Y+Y G+ SL+ M Sbjct: 220 MRLPETIRVLGWAPVDENFSARHSTSSRHYIYTF-----------GQIG----SLNIRRM 264 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR--------------- 187 A LVG HD FR+I C+ S + +I F+ F +EI Sbjct: 265 AEACTKLVGFHD---FRNI-CKPS--LDSIKTFERVIFSCYLEIDGQPYECENDRMVIKE 318 Query: 188 -------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEG 238 V +FL+ QIR L +G + + L ++ K P+AP E Sbjct: 319 NSSLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNIENFPGKPDYPIAPGEL 378 Query: 239 LYFDSVEYS 247 L F+ EY+ Sbjct: 379 LLFEKAEYT 387 >gi|302141694|emb|CBI18897.3| unnamed protein product [Vitis vinifera] Length = 419 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 148 HLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFGNL-----IEIRVVARSFLHTQIRSF 201 H VG H+F F + I + S R I FD N+ + ++ VV +SF+ QIR Sbjct: 235 HYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKM 294 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +G + + LE AL +D P AP GLY D +S Sbjct: 295 IGLAVAIMRNVAPESLLETAL-LKDVNINVPTAPEVGLYLDECFFS 339 >gi|242040995|ref|XP_002467892.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor] gi|241921746|gb|EER94890.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor] Length = 520 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 17/129 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHG---------AGR 50 R + I Y G+ Y G Q+Q+ S+I+ +E AIF G + +G + R Sbjct: 78 RVVLRIGYIGTEYRGLQKQRELGVDSTIESVLESAIFKSGGILESNYGKLQKVGWERSSR 137 Query: 51 TDSGVHALRQVAHFDLV---REWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARF 105 TD GVH+L + + R W AL +++ + D + + ++ + F R Sbjct: 138 TDKGVHSLATMISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVRR 197 Query: 106 SAIRRSYLY 114 + R Y Y Sbjct: 198 ECLYREYFY 206 >gi|326527051|dbj|BAK04467.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 572 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +I+ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 49 KVAIILAYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRAAPARYEWARAARTDK 108 Query: 54 GVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV R +V P LNA K++ I V F A+ RR Y Sbjct: 109 GVSAAAQVVSG---RFYVDPPGFIDRLNA--KLAPQIRAFGYVRVTNSFSAKKFCDRRRY 163 Query: 113 LY 114 +Y Sbjct: 164 VY 165 >gi|307136307|gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp. melo] Length = 519 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 24/216 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + + Y G GY G Q+ +I+ +E+A++L G + RTD Sbjct: 56 KVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDK 115 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+ QV + P LN+ L S I I V F+A+ RR Y+ Sbjct: 116 GVSAVGQVVSGRFYID--PPGFVDRLNSNL--SPQIRIFGYKRVTASFNAKKFCDRRRYV 171 Query: 114 YRIIT---------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 Y I + + G + K L+C + L+G+ +F +I Sbjct: 172 YLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVKTAITES 231 Query: 165 --ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 +S+ + I+ DV + G L + + S T + Sbjct: 232 DISSNIVNAIEVSDVQANGVLEDSATTSDSNKQTSV 267 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 9/103 (8%) Query: 147 QHLVGRHDFTTFRSIHCQASSPI--RTIDHFDVNSFG-----NLIEIRVVARSFLHTQIR 199 +H VG H+F F + +A P R I FD ++ ++ VV +SF+ QIR Sbjct: 332 KHYVGTHNFHNF-TTRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIR 390 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +G + + +EKALQ +D P AP GLY D Sbjct: 391 KMMGLAVAIMRNCAPESLIEKALQ-KDVNINVPTAPEVGLYLD 432 >gi|296824052|ref|XP_002850540.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480] gi|238838094|gb|EEQ27756.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480] Length = 614 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 37/95 (38%), Gaps = 25/95 (26%) Query: 89 ISILNLSIVD------------KQFHARFSAIRRSYLY-------------RIITRQAPL 123 I ILN ++ D F ARFS +R Y Y R I R L Sbjct: 244 IQILNGALPDDIRVLAWCPHPPPDFDARFSCRQRRYRYFFTQPAFCPAPGARGIVRAPEL 303 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + L LD E MR AAQH VG HDF F Sbjct: 304 KQDLSLPKLREGWLDIEAMREAAQHFVGSHDFRNF 338 >gi|224085970|ref|XP_002307759.1| predicted protein [Populus trichocarpa] gi|222857208|gb|EEE94755.1| predicted protein [Populus trichocarpa] Length = 426 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 17/125 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAG-----------RT 51 + + + Y G GY G Q+ +I+G +E+A+F V H G RT Sbjct: 2 KIAIFLTYCGVGYQGMQKNPGAKTIEGDLEEALFHAGA--VPEHDRGIPKRYDWARSART 59 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GV A+ QV + P L + L++ L S I I V F+A+ RR Sbjct: 60 DKGVSAVGQVVSGRFYID--PPGLVERLHSNL--SPQIRIFGYKRVTGSFNAKKFCDRRR 115 Query: 112 YLYRI 116 Y+Y I Sbjct: 116 YVYLI 120 >gi|119480651|ref|XP_001260354.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL 181] gi|119408508|gb|EAW18457.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL 181] Length = 577 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + ++I Y G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 80 KVAVLIGYAGTGYHGMQLSDKEKTIEGDLFTA-FVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E +I K +N K+ I + ++ + +K F R Y Sbjct: 139 KGVHAAGNVVSLKLIVEDPDLI--KKINE--KLCPQIRVWDIQVTNKGFSCYQMCDSRVY 194 Query: 113 LYRI 116 Y I Sbjct: 195 EYLI 198 >gi|156095520|ref|XP_001613795.1| tRNA pseudouridine synthase [Plasmodium vivax SaI-1] gi|148802669|gb|EDL44068.1| tRNA pseudouridine synthase, putative [Plasmodium vivax] Length = 545 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%) Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 S+ RII R G + IP D E ++ + +GRH F FR + + + Sbjct: 397 SHCVRIINRTG------GSSSAIP--CDVEKIKECCKLFLGRHSFELFRGT-LKGTEKQK 447 Query: 171 TIDHFDVNSFGNLIEIR-------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++ F SF L ++R + FL+ IR VG+L VG G + D+ AL Sbjct: 448 QVNPFCNISFLELHQLRSNIYQFVIQGDRFLYHMIRIIVGTLVQVGVGLLSYEDVRDALH 507 Query: 224 AQDRKECGPLAPPEGLYFDSV 244 + AP +GL + Sbjct: 508 FSKPLKVKLCAPAQGLCLTKI 528 >gi|297850452|ref|XP_002893107.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338949|gb|EFH69366.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 571 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 9/102 (8%) Query: 148 HLVGRHDFTTFRSIHCQASSPI--RTIDHFDVNSFGNL-----IEIRVVARSFLHTQIRS 200 + VG H+F F + +A+ P R I F+ N+ NL I+ VV +SF+ QIR Sbjct: 339 YYVGSHNFHNF-TTRTKAADPAANRYILSFNANTVINLDGKDFIKCEVVGQSFMLHQIRK 397 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +G V + +E A + +D + P+AP GLY D Sbjct: 398 MIGLAVAVMRNYAPESLIETAFK-KDVRINVPMAPEVGLYLD 438 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVH 56 ++ + G GY G Q+ +I+G +E+A+F + RTD GV Sbjct: 62 IVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPEADRNKPRNYEWARSARTDKGVS 121 Query: 57 ALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ QV R +V P + LN+ K+ D I + V F ++ RR Y+Y Sbjct: 122 AVGQVVSG---RFYVDPPGFVERLNS--KLPDQIRVFGYKRVAPSFSSKKLCDRRRYVYL 176 Query: 116 I 116 I Sbjct: 177 I 177 >gi|124506245|ref|XP_001351720.1| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] gi|23504649|emb|CAD51527.1| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] Length = 681 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 30/173 (17%) Query: 86 SDTISILN--LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 +D IS N S K + ++ I S +II + EK +IP D ++ Sbjct: 508 NDNISPSNDPPSFYHKNMKSSYNDISHSM--KIINK------EKEIRSVIP--CDINKIK 557 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-------GNLIEIRVVARSFLHT 196 A+ +G H+F FR + + +R I+ F F NL + + FL+ Sbjct: 558 ECAKLFIGHHNFECFRGT-LKGTEKLRKINTFCTIHFLDVYELKNNLYQFVIQGDRFLYH 616 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL-----APPEGLYFDSV 244 IR VG+L VG G D+ AL C PL AP +GL + + Sbjct: 617 MIRIIVGTLVQVGVGLLNVEDVRDALHL-----CKPLKVKLCAPSQGLCLNKI 664 >gi|17544142|ref|NP_500962.1| hypothetical protein Y73B6BL.29 [Caenorhabditis elegans] gi|15375270|gb|AAK95894.1|AC084197_22 Hypothetical protein Y73B6BL.29 [Caenorhabditis elegans] Length = 322 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 93/243 (38%), Gaps = 45/243 (18%) Query: 48 AGRTDSGVHALR---------QVAHFDLVREWVPVILCKALNAYLKISD--TISILNLSI 96 + RTD+ VHA+R + A D E + N + +++ ++ I ++ Sbjct: 62 SSRTDAKVHAIRNSVICQVPLEYAELDKTPETKKAFMTSWKNT-IDVANPGSLEIHDVHS 120 Query: 97 VDKQFHARFSAIRRSYLYRIIT----------RQAP---LALEKGRAWLIPKSLDCENMR 143 V F R S R Y YR+ RQ P E+ AW +P + Sbjct: 121 VSAGFCIRRSVSYRKYTYRMAVCRSWELWESIRQEPSISCFSERDYAWRLPPGFSAHKVL 180 Query: 144 IAAQHLVGRHDFTTF-----RSIHCQASSP--IRTIDHFDV---------NSFGNLIEIR 187 A + G +F R + SP ++ I H + N + + Sbjct: 181 QAGKLFEGEQVMGSFFKHTAREKRYEPISPTALKYIFHVGLSKGEAYSMENDIYDYYNVT 240 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECG-PLAPPEGLYFDS 243 +VA+SF+ QIR + L + T +E L + + + G P+APP+GL+ Sbjct: 241 IVAKSFVREQIRRMMSCLVNYSYDRIPLTTIEWLLSNPISSNFFDLGIPVAPPQGLFLTD 300 Query: 244 VEY 246 V Y Sbjct: 301 VVY 303 >gi|238493757|ref|XP_002378115.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357] gi|317157361|ref|XP_003190833.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40] gi|220696609|gb|EED52951.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357] Length = 601 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 118 KVAVLLGYSGTGYKGMQLSATEKTIEGDL-FAAFVAAGAISKANAADPKKSSLVRCARTD 176 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ + +NA+L S I + + + K F + R Y Sbjct: 177 KGVHAAGNVVSLKLIVEDEDIV--QKINAHL--SPQIRVWGILVASKSFSSYQMCDSRIY 232 Query: 113 LY 114 Y Sbjct: 233 EY 234 >gi|297850446|ref|XP_002893104.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338946|gb|EFH69363.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 557 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 9/102 (8%) Query: 148 HLVGRHDFTTFRSIHCQASSPI--RTIDHFDVNSFGNL-----IEIRVVARSFLHTQIRS 200 + VG H+F F + +A+ P R I F+ N+ NL ++ VV +SF+ QIR Sbjct: 325 YYVGSHNFHNF-TTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRK 383 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +G V + +E A + +D + P+AP GLY D Sbjct: 384 MIGLAVAVMRNYAPESLIETAFK-KDVRINVPMAPEVGLYLD 424 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + ++ + G GY G Q+ +I+G +E+A+F + RTD Sbjct: 59 KVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSARTDK 118 Query: 54 GVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV R +V P + LN+ K+ D I + V F ++ RR Y Sbjct: 119 GVSAVGQVVSG---RFYVDPPGFVERLNS--KLPDQIRVFGYKRVAPSFSSKKLCDRRRY 173 Query: 113 LYRI 116 +Y I Sbjct: 174 VYLI 177 >gi|156040419|ref|XP_001587196.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980] gi|154696282|gb|EDN96020.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980 UF-70] Length = 592 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 78/180 (43%), Gaps = 33/180 (18%) Query: 45 VHGAGRTDSGVHAL-----RQVAHFDLVREWVPV--ILCKALNAYLKISDTISILNLSIV 97 + G TDSG L ++ F+ + + +P +L + L ++I ++ V Sbjct: 193 IPGPRGTDSGAFVLSDPHIQESLDFNHITDEIPYPQVLNRLLPPDIRI---LAWCPSPPV 249 Query: 98 DKQFHARFSAIRRSYLYRIITRQA----PLALEKGRAWLIPKS--LDCENMRIAAQHLVG 151 D F ARFS R Y Y T+ A P LE G + K LD E MR AA+ G Sbjct: 250 D--FSARFSCRERRYRY-FFTQPAFSPIPSQLEHGASASKMKDGWLDIEAMREAAKLYEG 306 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSF-GNLIEIR--------VVARSFLHTQIRSFV 202 HDF F C+ P + I +F+ F N+ E++ V SFL IRS + Sbjct: 307 LHDFRNF----CKV-DPGKQITNFERRIFYANIEEVKDYTSSLAYVNGDSFLDDSIRSKI 361 >gi|169783932|ref|XP_001826428.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40] gi|83775172|dbj|BAE65295.1| unnamed protein product [Aspergillus oryzae] Length = 563 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 80 KVAVLLGYSGTGYKGMQLSATEKTIEGDL-FAAFVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ + +NA+L S I + + + K F + R Y Sbjct: 139 KGVHAAGNVVSLKLIVEDEDIV--QKINAHL--SPQIRVWGILVASKSFSSYQMCDSRIY 194 Query: 113 LY 114 Y Sbjct: 195 EY 196 >gi|259146190|emb|CAY79449.1| Deg1p [Saccharomyces cerevisiae EC1118] Length = 442 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 93/244 (38%), Gaps = 47/244 (19%) Query: 10 YNGSGYFGWQRQKNGS---SIQGSIEKAIF---LVTGEIVVVHG---AGRTDSGVHALRQ 60 Y G Y G QK + +++G+I +A+ LV ++ + GRTD GV A+ Q Sbjct: 100 YLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQNYKFSRCGRTDKGVSAMNQ 159 Query: 61 VAHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 V D + + LN L IS + L F ARFS + Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLR-PPPNFDARFSCV 218 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QAS 166 R Y Y + G K+L+ E M AA + VG DF F + Q + Sbjct: 219 HRHYKY----------IFNG------KNLNIEKMSKAASYFVGERDFRNFCKLDGSKQIT 262 Query: 167 SPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTS------TDLE 219 + RTI + ++ +FL Q+R + L LVG TD+E Sbjct: 263 NFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIE 322 Query: 220 KALQ 223 K Q Sbjct: 323 KTPQ 326 >gi|151940762|gb|EDN59149.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789] Length = 442 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 93/244 (38%), Gaps = 47/244 (19%) Query: 10 YNGSGYFGWQRQKNGS---SIQGSIEKAIF---LVTGEIVVVHG---AGRTDSGVHALRQ 60 Y G Y G QK + +++G+I +A+ LV ++ + GRTD GV A+ Q Sbjct: 100 YLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQ 159 Query: 61 VAHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 V D + + LN L IS + L F ARFS + Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLR-PPPNFDARFSCV 218 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QAS 166 R Y Y + G K+L+ E M AA + VG DF F + Q + Sbjct: 219 HRHYKY----------IFNG------KNLNIEKMSKAASYFVGERDFRNFCKLDGSKQIT 262 Query: 167 SPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTS------TDLE 219 + RTI + ++ +FL Q+R + L LVG TD+E Sbjct: 263 NFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIE 322 Query: 220 KALQ 223 K Q Sbjct: 323 KTPQ 326 >gi|323305104|gb|EGA58854.1| Deg1p [Saccharomyces cerevisiae FostersB] Length = 431 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 87/247 (35%), Gaps = 56/247 (22%) Query: 14 GYFGWQRQKNGSSIQG------SIEKAIFLVTGEIVVVHG----------AGRTDSGVHA 57 Y GW NG ++Q ++E I + +V GRTD GV A Sbjct: 88 AYLGWNY--NGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSA 145 Query: 58 LRQVAHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 + QV D + + LN L IS + L F ARF Sbjct: 146 MNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLR-PPPNFDARF 204 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-- 163 S + R Y Y + G K+L+ E M AA + VG DF F + Sbjct: 205 SCVHRHYKY----------IFNG------KNLNIEKMSKAASYFVGERDFRNFCKLDGSK 248 Query: 164 QASSPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTS------T 216 Q ++ RTI + ++ +FL Q+R + L LVG T Sbjct: 249 QITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLT 308 Query: 217 DLEKALQ 223 D+EK Q Sbjct: 309 DIEKTPQ 315 >gi|123438137|ref|XP_001309856.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121891601|gb|EAX96926.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 365 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%) Query: 48 AGRTDSGVHALRQVAHFDLV-REWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARF 105 + RTD+GVHA +QVA F LV E V V L + + L + I + F+A+ Sbjct: 91 SSRTDTGVHAAKQVATFRLVLPEGVKVKDLPRLIQKQLSKNSPIRVWAAVKPGIIFNAQQ 150 Query: 106 SAIRRSYLYRI----ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RS 160 SA R Y Y + + + L RA + P VGRH + + R Sbjct: 151 SASSRRYHYLLPVNTFSSENIDHLNYLRAKICPI-------------FVGRHQYANYTRH 197 Query: 161 IHCQ-ASSPIRTI------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 I + + I+TI D FDVN + + SF+ QIR + ++ V Sbjct: 198 ITDELLHTSIKTISEFTFTDPFDVNG-TKYVLFTISGNSFMLNQIRKMIAAVLAVSHHLM 256 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 T DL+ L + + P GL+ D V Sbjct: 257 TEDDLKDTL--TETRWLLPRLIGTGLFLDQV 285 >gi|19075416|ref|NP_587916.1| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe 972h-] gi|74676082|sp|O74451|YCG6_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C16C4.06c gi|6855456|emb|CAA20745.2| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe] Length = 413 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 12/68 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTDS 53 YC ++ Y G+G+ G Q N +IQ ++ +A F G +V V+ A RTD Sbjct: 40 YC-VVSYRGTGFAGLQYNANVKTIQDTLFQA-FARVGAVVQVNADSPKKIRMCSAARTDK 97 Query: 54 GVHALRQV 61 GVHA+ V Sbjct: 98 GVHAIVNV 105 >gi|323337774|gb|EGA79017.1| Deg1p [Saccharomyces cerevisiae Vin13] Length = 442 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 93/244 (38%), Gaps = 47/244 (19%) Query: 10 YNGSGYFGWQRQKNGS---SIQGSIEKAIF---LVTGEIVVVHG---AGRTDSGVHALRQ 60 Y G Y G QK + +++G+I +A+ LV ++ + GRTD GV A+ Q Sbjct: 100 YLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQBYKFSRCGRTDKGVSAMNQ 159 Query: 61 VAHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 V D + + LN L IS + L F ARFS + Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLR-PPPNFDARFSCV 218 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QAS 166 R Y Y + G K+L+ E M AA + VG DF F + Q + Sbjct: 219 HRHYKY----------IFNG------KNLNIEKMSKAASYFVGERDFRNFCKLDGSKQIT 262 Query: 167 SPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTS------TDLE 219 + RTI + ++ +FL Q+R + L LVG TD+E Sbjct: 263 NFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIE 322 Query: 220 KALQ 223 K Q Sbjct: 323 KTPQ 326 >gi|190406572|gb|EDV09839.1| tRNA pseudouridine synthase 3 [Saccharomyces cerevisiae RM11-1a] gi|256268860|gb|EEU04212.1| Deg1p [Saccharomyces cerevisiae JAY291] gi|323309245|gb|EGA62466.1| Deg1p [Saccharomyces cerevisiae FostersO] Length = 442 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 93/244 (38%), Gaps = 47/244 (19%) Query: 10 YNGSGYFGWQRQKNGS---SIQGSIEKAIF---LVTGEIVVVHG---AGRTDSGVHALRQ 60 Y G Y G QK + +++G+I +A+ LV ++ + GRTD GV A+ Q Sbjct: 100 YLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQ 159 Query: 61 VAHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 V D + + LN L IS + L F ARFS + Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLR-PPPNFDARFSCV 218 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QAS 166 R Y Y + G K+L+ E M AA + VG DF F + Q + Sbjct: 219 HRHYKY----------IFNG------KNLNIEKMSKAASYFVGERDFRNFCKLDGSKQIT 262 Query: 167 SPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTS------TDLE 219 + RTI + ++ +FL Q+R + L LVG TD+E Sbjct: 263 NFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIE 322 Query: 220 KALQ 223 K Q Sbjct: 323 KTPQ 326 >gi|168042339|ref|XP_001773646.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675034|gb|EDQ61534.1| predicted protein [Physcomitrella patens subsp. patens] Length = 445 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 17/129 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHG---------AGR 50 + M + Y G+ Y G Q Q+ + +I+ +E AIF G I G + R Sbjct: 3 KVAMWLGYVGTRYKGLQIQRGPGSAQTIEEELELAIFKAGGMIESNFGNLSKISWTRSSR 62 Query: 51 TDSGVHALRQVAHFDL-VRE--WVPVILCKAL--NAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L V + V E WV + AL N +S I + ++ V + F AR Sbjct: 63 TDKGVHSLCTVISMKMEVPEAAWVNDMDGFALADNINFHLSPFIRVFGITPVTRSFRARH 122 Query: 106 SAIRRSYLY 114 R+Y Y Sbjct: 123 DCCTRTYDY 131 >gi|71000998|ref|XP_755180.1| tRNA pseudouridine synthase [Aspergillus fumigatus Af293] gi|66852818|gb|EAL93142.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus Af293] gi|159129271|gb|EDP54385.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus A1163] Length = 577 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + ++I Y G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 80 KVAVLIGYAGTGYHGMQLSDKEKTIEGDLFTA-FVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E +I K +N K+ I + ++ + +K F R Y Sbjct: 139 KGVHAAGNVVSLKLIIEDPDLI--KKINE--KLCPQIRVWDIQVTNKGFSCYQMCDSRVY 194 Query: 113 LYRI 116 Y I Sbjct: 195 EYLI 198 >gi|50548607|ref|XP_501773.1| YALI0C12749p [Yarrowia lipolytica] gi|74635069|sp|Q6CC39|PUS1_YARLI RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49647640|emb|CAG82083.1| YALI0C12749p [Yarrowia lipolytica] Length = 528 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 16/124 (12%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTDSG 54 CMI Y G+GY G Q +I+G I +A F+ G I + A RTD G Sbjct: 89 CMI-GYCGTGYHGMQLNPPQKTIEGDIFQA-FVKAGAISQNNADDPKKSAFMRAARTDKG 146 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA V ++ E ++ + +N++L + + + +S +K F R R Y Y Sbjct: 147 VHAAGNVISLKMIIEDENIV--EKINSHL--PEQLRVWGVSRTNKAFECRKLCSSRVYEY 202 Query: 115 RIIT 118 + T Sbjct: 203 LMPT 206 >gi|150865014|ref|XP_001384060.2| hypothetical protein PICST_58964 [Scheffersomyces stipitis CBS 6054] gi|149386270|gb|ABN66031.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 476 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 17/128 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHG----------AGR 50 + ++I Y G+GY G Q Q + +I+ + +A F G + + A R Sbjct: 81 KVAVMIGYCGTGYNGMQLQNDPKIPTIERDLYEA-FAAAGAVSPENAMDIKKSGFMRAAR 139 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V L+ E P IL K +N K+ D I I + V K F R R Sbjct: 140 TDKGVHAAGNVISLKLIIE-DPEILAK-INE--KLPDQIRIWGIQRVTKSFDCRKMCSSR 195 Query: 111 SYLYRIIT 118 Y Y + T Sbjct: 196 VYEYLLPT 203 >gi|67608685|ref|XP_666896.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54657966|gb|EAL36665.1| hypothetical protein Chro.80065 [Cryptosporidium hominis] Length = 501 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 22/86 (25%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-------SIQGSIEK-----AIFLVTGEIVVVHGA 48 M YCM Y+GS Y G Q Q + +I+G +E +F V+ E G Sbjct: 7 MRTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFVSNEQNDDQGG 66 Query: 49 ----------GRTDSGVHALRQVAHF 64 GRTD GVH++ QV F Sbjct: 67 LLKKIKWSRVGRTDKGVHSVCQVVSF 92 >gi|328873726|gb|EGG22093.1| hypothetical protein DFA_01983 [Dictyostelium fasciculatum] Length = 604 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 22/129 (17%) Query: 5 CMIIEYNGSGYFG--WQRQKNGSSIQGSIEKAIFLVTGEIVVVH----------GAGRTD 52 M+ Y G+G+FG + ++ +++ +EKA+FL +G I+ + + RTD Sbjct: 157 AMLFSYVGTGHFGLEYTYEEKYPALENYLEKALFL-SGMILPTNFGDVTRIKWSRSSRTD 215 Query: 53 SGVHALRQV--AHFDLVREWVPV-----ILCKALNAYLKISDTISILNLSIVDKQFHARF 105 GVH+L + A + RE + +N+YL T+ I++++ + F R Sbjct: 216 KGVHSLSTIIGASILINREKIQTKEGVRAYIDQINSYL--PPTLHIVSMATTSRSFMPRR 273 Query: 106 SAIRRSYLY 114 R+Y Y Sbjct: 274 QTSSRTYHY 282 >gi|67539990|ref|XP_663769.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4] gi|40738761|gb|EAA57951.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4] gi|259479643|tpe|CBF70055.1| TPA: tRNA pseudouridine synthase, putative (AFU_orthologue; AFUA_2G08460) [Aspergillus nidulans FGSC A4] Length = 574 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + ++I Y+G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 80 KVAVLIGYSGTGYKGMQLSTTEKTIEGELFTA-FVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + L+ E P I+ K +N +L S I + + + +K F + R Y Sbjct: 139 KGVHAAGNIVSLKLIVE-DPDIVQK-INDHL--SPQIRVWGILVANKSFSSYQMCDSRIY 194 Query: 113 LYRI 116 Y I Sbjct: 195 EYLI 198 >gi|323348774|gb|EGA83014.1| Deg1p [Saccharomyces cerevisiae Lalvin QA23] Length = 315 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 72/197 (36%), Gaps = 38/197 (19%) Query: 48 AGRTDSGVHALRQVAHF------------DLVREWVPVILCKALNAYLKISDTISILNLS 95 GRTD GV A+ QV D + + LN L IS + L Sbjct: 20 CGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLR 79 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 F ARFS + R Y Y + G K+L+ E M AA + VG DF Sbjct: 80 -PPPNFDARFSCVHRHYKY----------IFNG------KNLNIEKMSKAASYFVGERDF 122 Query: 156 TTFRSIHC--QASSPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGK 212 F + Q ++ RTI + ++ +FL Q+R + L LVG Sbjct: 123 RNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSL 182 Query: 213 WTS------TDLEKALQ 223 TD+EK Q Sbjct: 183 EVPEIVLRLTDIEKTPQ 199 >gi|207345658|gb|EDZ72410.1| YFL001Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 315 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 72/197 (36%), Gaps = 38/197 (19%) Query: 48 AGRTDSGVHALRQVAHF------------DLVREWVPVILCKALNAYLKISDTISILNLS 95 GRTD GV A+ QV D + + LN L IS + L Sbjct: 20 CGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLR 79 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 F ARFS + R Y Y + G K+L+ E M AA + VG DF Sbjct: 80 -PPPNFDARFSCVHRHYKY----------IFNG------KNLNIEKMSKAASYFVGERDF 122 Query: 156 TTFRSIHC--QASSPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGK 212 F + Q ++ RTI + ++ +FL Q+R + L LVG Sbjct: 123 RNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSL 182 Query: 213 WTS------TDLEKALQ 223 TD+EK Q Sbjct: 183 EVPEIVLRLTDIEKTPQ 199 >gi|302851624|ref|XP_002957335.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] gi|300257294|gb|EFJ41544.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] Length = 642 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 100/256 (39%), Gaps = 56/256 (21%) Query: 10 YNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD--- 65 Y G Y G+ RQ N ++I+ S K + G +V ++ LR VA D Sbjct: 117 YVGWSYQGFARQDNTENTIEASSVKRGW---GGVVALN-----------LRSVARVDEPE 162 Query: 66 --LVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 L E+ P ++ KAL + +L + V + F++R Y+Y P Sbjct: 163 APLELEYDYPRLVNKAL------PPDVRVLGWTAVPENFNSR-------YVYH------P 203 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR------TIDHFD 176 E R SLD + MR AA VG HDF F R T+D Sbjct: 204 DPPESCR-----YSLDIDAMRAAAARFVGEHDFRNFCKPDVATVRSFRRRILSFTLDPVP 258 Query: 177 VNSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECG 231 +S + I V +FL Q+R L +VG G+ + + L +A RK Sbjct: 259 TSSSDGAHRVFAITVRGTAFLWHQVRCMAAVLLMVGRGQERPEVVSELLDVEAHPRKPQY 318 Query: 232 PLAPPEGLYFDSVEYS 247 +AP E L + +S Sbjct: 319 SMAPEEPLLLYACGFS 334 >gi|223998991|ref|XP_002289168.1| pseudouridylate synthase [Thalassiosira pseudonana CCMP1335] gi|220974376|gb|EED92705.1| pseudouridylate synthase [Thalassiosira pseudonana CCMP1335] Length = 469 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 46/108 (42%), Gaps = 14/108 (12%) Query: 26 SIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 ++Q +E A+ TG + V GAGRTD GVHA QV FD VP+ L K Sbjct: 110 TVQQQLETALHQWTGLSIATLRVRGAGRTDKGVHASGQVVGFD-----VPLSLLKGEGGG 164 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRA 130 T S LS HA F +R +Y R P + G A Sbjct: 165 GSDETTDSCDRLS-----EHA-FPLLRGAYQSLTQHRDQPTNSDTGNA 206 >gi|18394855|ref|NP_564112.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|9558589|gb|AAF88152.1|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapiens gi|4455035 and contains tRNA pseudoridine synthase PF|01416 domain. ESTs gb|T76494, gb|W43440 come from this gene [Arabidopsis thaliana] gi|14334544|gb|AAK59680.1| unknown protein [Arabidopsis thaliana] gi|16323470|gb|AAL15229.1| unknown protein [Arabidopsis thaliana] gi|332191845|gb|AEE29966.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 549 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 9/102 (8%) Query: 148 HLVGRHDFTTFRSIHCQASSPI--RTIDHFDVNSFGNL-----IEIRVVARSFLHTQIRS 200 + VG H+F F + +A+ P R I F+ N+ NL ++ VV +SF+ QIR Sbjct: 327 YYVGSHNFHNF-TTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRK 385 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +G L + + L +A +D + P+AP GLY D Sbjct: 386 MIG-LAVAIMRNYAPESLIEASFKKDVRINVPMAPEVGLYLD 426 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + ++ + G GY G Q+ +I+G +E+A+F + RTD Sbjct: 59 KVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSARTDK 118 Query: 54 GVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV R +V P + LN+ K+ D I + V F ++ RR Y Sbjct: 119 GVSAVGQVVSG---RFYVDPPGFVERLNS--KLPDQIRVFGYKRVAPSFSSKKFCDRRRY 173 Query: 113 LYRI 116 +Y I Sbjct: 174 VYLI 177 >gi|321265516|ref|XP_003197474.1| pseudouridylate synthase [Cryptococcus gattii WM276] gi|317463954|gb|ADV25687.1| Pseudouridylate synthase, putative [Cryptococcus gattii WM276] Length = 560 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 R ++I Y G+GY G Q Q + +I+G I A+ V V + A RTD Sbjct: 124 RCAVLIGYCGTGYQGMQIQDHTDRTIEGEIFAALVKAGAVSADNAVDARKVDIARAARTD 183 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRR 110 +GVHA V ++ E K + Y+ + D I + K F+AR +A R Sbjct: 184 AGVHAAGNVISIKMITEPPLPEGFKNVAEYVNTFLPDQIRMWGWVRTVKSFNARTAADSR 243 Query: 111 SYLY 114 Y Y Sbjct: 244 IYEY 247 >gi|212526856|ref|XP_002143585.1| pseudouridylate synthase 3 [Penicillium marneffei ATCC 18224] gi|210072983|gb|EEA27070.1| pseudouridylate synthase 3 [Penicillium marneffei ATCC 18224] Length = 630 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 53/125 (42%), Gaps = 23/125 (18%) Query: 52 DSGVHALRQVAH---FDLVREWVPVILCKALNAYLKISDTISILN-LSIVDKQFHARFSA 107 D V L ++ +D +R+ +P I + LN L I IL F ARFS Sbjct: 242 DVEVQPLDEIEEDDGWDDIRDELPYI--QVLNGVL--PQDIRILAWCPNPGPDFDARFSC 297 Query: 108 IRRSYLYRIITRQA--PLALEKG------------RAWLIPKSLDCENMRIAAQHLVGRH 153 R Y Y T+ A P+A E G + L LD E MR A +H VGRH Sbjct: 298 RERQYRY-FFTQPAFNPIAGELGFLRSAAHHRGIAKKELRDGWLDIEAMREACKHYVGRH 356 Query: 154 DFTTF 158 DF F Sbjct: 357 DFRNF 361 >gi|121698285|ref|XP_001267772.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1] gi|119395914|gb|EAW06346.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1] Length = 568 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 15/124 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + ++I Y G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 80 KVAVLIGYAGTGYHGMQLSDKEKTIEGDL-FAAFVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ K +N L I + ++ + +K F R Y Sbjct: 139 KGVHAAGNVVSLKLIVEDPDIV--KKINEQL--CPQIRVWDVQVTNKGFSCYQMCDSRVY 194 Query: 113 LYRI 116 Y I Sbjct: 195 EYLI 198 >gi|255539108|ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis] gi|223551320|gb|EEF52806.1| pseudouridylate synthase, putative [Ricinus communis] Length = 584 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 15/117 (12%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVHALRQ 60 Y G GY G Q+ +I+G +E+A+F G + RTD GV A+ Q Sbjct: 62 YCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDWARSARTDKGVSAVGQ 121 Query: 61 VAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 V R +V P L LN+ L I I V F+A+ RR Y+Y I Sbjct: 122 VISG---RFYVDPPGLVDRLNSIL--PSQIRIFGYKRVTASFNAKKFCDRRRYVYLI 173 >gi|190349084|gb|EDK41674.2| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC 6260] Length = 477 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 18/126 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 CMI Y G+GY G Q Q N +I+G + A F+ G I + A RTD Sbjct: 33 CMI-GYCGTGYNGMQIQNNPDVKTIEGDLFDA-FVKAGAISPENADDLKKNAFMRAARTD 90 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ + +N++L D I + + +K F R R Y Sbjct: 91 KGVHAAGNVISCKLIIEDQDIL--QRINSHL--PDQIRVWGIERTNKSFDCRKMCSSRVY 146 Query: 113 LYRIIT 118 Y + T Sbjct: 147 EYLLPT 152 >gi|297842357|ref|XP_002889060.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297334901|gb|EFH65319.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 458 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 23 KVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTDK 82 Query: 54 GVHALRQV--AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 GV A+ QV F++ P LN+ L + I I V F ++ RR Sbjct: 83 GVSAVGQVVSGRFNV----DPPGFVDRLNSNL--PNQIRIFGYKHVTPSFSSKKFCDRRR 136 Query: 112 YLY 114 Y+Y Sbjct: 137 YVY 139 >gi|146412075|ref|XP_001482009.1| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC 6260] Length = 477 Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 18/126 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 CMI Y G+GY G Q Q N +I+G + A F+ G I + A RTD Sbjct: 33 CMI-GYCGTGYNGMQIQNNPDVKTIEGDLFDA-FVKAGAISPENADDLKKNAFMRAARTD 90 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ + +N++L D I + + +K F R R Y Sbjct: 91 KGVHAAGNVISCKLIIEDQDIL--QRINSHL--PDQIRVWGIERTNKSFDCRKMCSSRVY 146 Query: 113 LYRIIT 118 Y + T Sbjct: 147 EYLLPT 152 >gi|325190643|emb|CCA25138.1| ubiquitin fusion degradation protein putative [Albugo laibachii Nc14] Length = 585 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 19/129 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 R ++ YNGS Y G Q N +I+ I KA++ + + + RTD Sbjct: 79 RVAIVAGYNGSDYHGVQLNPNVPTIEDEIRKAMYHIGALRASNFQDLNKIDWSRSSRTDK 138 Query: 54 GVHALRQV-AHFDLVREWV--PVI-----LCKALNAYLKISDTISILNLSIVDKQFHARF 105 GVHA V A L+ E V PV L +ALN L I I +++ V F+AR Sbjct: 139 GVHASTIVFAGKLLLNEDVIDPVTGRVRGLTRALNENL--PPNIRIFSVTRVCNSFNART 196 Query: 106 SAIRRSYLY 114 R Y Y Sbjct: 197 ECALREYEY 205 >gi|19075946|ref|NP_588446.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe 972h-] gi|74627010|sp|O94396|PUS1_SCHPO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|4008551|emb|CAA22472.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe] gi|6469502|emb|CAB61835.1| pseudouridine synthase [Schizosaccharomyces pombe] Length = 534 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 19/124 (15%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----------VVVHGAGRTDSGVH 56 ++ Y GSGY G Q +I+G + A F+ G + V + A RTD GVH Sbjct: 49 LVGYCGSGYHGMQLNPPSKTIEGDLFDA-FVKAGAVSSYNADDPKKVALARAARTDKGVH 107 Query: 57 ALRQVAHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A V L+ E +I + + L +++ D I +N F+ R R Y Y Sbjct: 108 AAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTIN------SFNPRTYCESRIYEY 161 Query: 115 RIIT 118 + T Sbjct: 162 MVPT 165 >gi|66356668|ref|XP_625512.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa II] gi|46226500|gb|EAK87494.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa II] Length = 501 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 22/86 (25%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-------SIQGSIEK-----AIFLVTGEIVVVHGA 48 M YCM Y+GS Y G Q Q + +I+G +E +F ++ E G Sbjct: 7 MKTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFLSNEQNDDQGG 66 Query: 49 ----------GRTDSGVHALRQVAHF 64 GRTD GVH++ QV F Sbjct: 67 LLKKIKWSRVGRTDKGVHSVCQVVSF 92 >gi|70941666|ref|XP_741093.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56519252|emb|CAH76348.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 493 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 14/94 (14%) Query: 47 GAGRTDSGVHA---------LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 G RTD GVHA +++ F+ E + + L + LN +K+ + + N Sbjct: 137 GVSRTDKGVHAKEYVCQYISYKKLPPFNGNLEKIKLSLNRLLNKDIKV---LGVFNAPF- 192 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 F+ RF + + Y Y I R+ LEK +W Sbjct: 193 -NSFNVRFHNLGKIYTYNIDLRKPSQPLEKNFSW 225 >gi|224061937|ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|222842399|gb|EEE79946.1| predicted protein [Populus trichocarpa] Length = 429 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 24/165 (14%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVHALRQ 60 Y G GY G Q+ +I+G +E+A+F G + RTD GV A+ Q Sbjct: 25 YCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYDWARSARTDKGVSAVGQ 84 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-- 118 V + P L + L++ L S I V F+A+ RR Y+Y I Sbjct: 85 VVSGRFYID--PPGLVERLHSNL--SPQFRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFA 140 Query: 119 --------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 R++ LA + + LI K L+C VG+ F Sbjct: 141 LDPCSHRDRESVLASLRSGSELI-KCLECSERGRKVAGAVGKRSF 184 >gi|219117902|ref|XP_002179737.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408790|gb|EEC48723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 216 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 94/238 (39%), Gaps = 43/238 (18%) Query: 30 SIEKAIF--LVTGEIVVVHGA------GRTDSGVHALRQVAHFDLVREWVPVILCKAL-- 79 S+EKA+F L T +V + GRTD GV A Q P+ +AL Sbjct: 1 SVEKALFRALRTSRLVESRASSGYSRCGRTDKGVSAAGQQTD-------PPLRQQRALRE 53 Query: 80 NAYLKI-----SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +AY KI D I +L V F ARFSA R+Y Y R Sbjct: 54 HAYDKILNNLLPDDIRVLGWIPVSDDFSARFSATSRTYRYFFRRR--------------- 98 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTIDHFDVNSFGNLIEIR---VVA 190 ++LD E MR + G HDF F + + R ID ++ + + +V Sbjct: 99 RTLDVEAMRQGLHRMQGTHDFRNFCKMDVEKVYNFERRIDKAEIVNMERDTGVSYFLIVG 158 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQDR-KECGPLAPPEGLYFDSVEY 246 ++FL QIR L +G G T + L AQ+ K PLA + L Y Sbjct: 159 QAFLWHQIRYMASILFAIGQGLETPELVTAMLDIAQNPGKPAYPLADEQPLVLHDCGY 216 >gi|302844654|ref|XP_002953867.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f. nagariensis] gi|300260975|gb|EFJ45191.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f. nagariensis] Length = 709 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 14/79 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAG-------- 49 M R + Y+G+GYFG QRQ + + +++ +E+A+ + G + H Sbjct: 1 MQRVAFVCGYDGAGYFGLQRQPDNTGRPTVEQELERAL-VAAGALQARHAGALHKVNWSR 59 Query: 50 --RTDSGVHALRQVAHFDL 66 RTD GV A V D+ Sbjct: 60 TSRTDKGVSAAANVVSLDI 78 >gi|226506356|ref|NP_001150144.1| LOC100283773 [Zea mays] gi|195637102|gb|ACG38019.1| tRNA pseudouridine synthase family protein [Zea mays] Length = 561 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 53 KVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTDK 112 Query: 54 GVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV R +V P LNA L + I V F+A+ RR Y Sbjct: 113 GVSAAAQVVSG---RFYVDPPGFIDRLNAQL--APQIRAYGYVRVTNSFNAKKFCDRRRY 167 Query: 113 LY 114 LY Sbjct: 168 LY 169 >gi|145545961|ref|XP_001458664.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426485|emb|CAK91267.1| unnamed protein product [Paramecium tetraurelia] Length = 351 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 63/281 (22%), Positives = 107/281 (38%), Gaps = 59/281 (20%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIVVVHGA-----------GRTDSGVH 56 YNG+ Y G Q QK G + ++E +F L +++ A RTD GVH Sbjct: 16 YNGANYHGLQIQK-GVEFE-TVESKLFQALKDSNLIMEQNANDLSKSGWSRGARTDKGVH 73 Query: 57 ALRQVAHFDL---------------------VREWVPVILCKALNAY-LKISDTISILNL 94 AL L +R+ V K LN + + I + ++ Sbjct: 74 ALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNVINSNLPNDIKVHSI 133 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLAL---EKGRAWLIPKSLDCENMRIAAQHLVG 151 +V + F R +A R Y Y AP+++ +KG L E + + VG Sbjct: 134 KLVTQGFDVRKNARYRFYEYI-----APVSIYSDKKGEEIL-------EKVSNLVKKFVG 181 Query: 152 RHDFTTF-RSIHCQASSPIRTIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLK 206 H+F + R + +R I V F + + +SF++ QIR +G + Sbjct: 182 THNFHNYSRGMKYTDPQSMRYILSIQVELFKCQDREFFKFLIHGQSFIYHQIRKMMGIVI 241 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + T ++ + LAP EGL+ + + + Sbjct: 242 QIFQEELPDTFIDNTFFKNQLRII--LAPAEGLFLNRISFE 280 >gi|223948195|gb|ACN28181.1| unknown [Zea mays] Length = 562 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 53 KVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTDK 112 Query: 54 GVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV R +V P LNA L + I V F+A+ RR Y Sbjct: 113 GVSAAAQVVSG---RFYVDPPGFIDRLNAQL--APQIRAYGYVRVTNSFNAKKFCDRRRY 167 Query: 113 LY 114 LY Sbjct: 168 LY 169 >gi|212532769|ref|XP_002146541.1| tRNA pseudouridine synthase, putative [Penicillium marneffei ATCC 18224] gi|210071905|gb|EEA25994.1| tRNA pseudouridine synthase, putative [Penicillium marneffei ATCC 18224] Length = 571 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + ++I Y+G+GY G Q +I+G + A F+ G I + A RTD Sbjct: 76 KVAVMIGYSGTGYHGMQLSPTEKTIEGDL-FAAFVAAGAISKANAADPKKSSLVRCARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E P I+ K +N L S I + V K F R Y Sbjct: 135 RGVHAAGNVVSLKLIVE-DPDIVQK-INDNL--SPQIRVWGYETVTKGFSCYQLCDSRMY 190 Query: 113 LYRIIT 118 Y I T Sbjct: 191 EYLIPT 196 >gi|145529301|ref|XP_001450439.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418050|emb|CAK83042.1| unnamed protein product [Paramecium tetraurelia] Length = 297 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 44/229 (19%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDL---------------VREWVPV--ILCKALNAYL 83 +I V GA RTD GVHAL V L V +W +L + LN+ Sbjct: 36 KIGVSRGA-RTDRGVHALCNVVSLKLQIDQKYCSSMTNNKLVDKWNIDWDLLIQELNS-- 92 Query: 84 KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 ++ I + + V + F+ + A +R Y Y + P + ++ Sbjct: 93 QLPSDIKVNAIKHVTQSFNVKHQADQRMYNY-----------------ISPSFSTVDYVQ 135 Query: 144 IAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSFG----NLIEIRVVARSFLHTQI 198 +G H+F + S S R I F V + N ++ ++ SF++ QI Sbjct: 136 NICNQYLGTHNFHNYTSKKEYNDPSSKRFIQDFRVQNLNFHNENYLKFTILGNSFMYHQI 195 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 R +G++ + K + ++ Q + +AP +GLY ++++ Sbjct: 196 RKIIGTIYQIVQEKKDLSFIQDTFSQQ--QHSLYIAPQQGLYLREIKFT 242 >gi|13541142|ref|NP_110830.1| putative pseudouridylate synthase [Thermoplasma volcanium GSS1] gi|14324528|dbj|BAB59455.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 388 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%) Query: 18 WQRQKNGSSIQGSI-EKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF------DLVREW 70 W +K+G SI+ I E A+ + G+ +HG+GR D V L F ++R + Sbjct: 178 WIHKKDGDSIESIIGEAALRIAGGKNYYLHGSGREDVDVRMLGNGREFVIEVEAPIMRTF 237 Query: 71 VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 IL + +N +K + I +LS VD++ + S +Y I Sbjct: 238 DLSILSETVNRSMK---GVEIFDLSFVDRKTVKEIKEEKHSKVYDCI 281 >gi|134080163|emb|CAK46143.1| unnamed protein product [Aspergillus niger] Length = 567 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 15/125 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+G+GY G Q + +I+G + A F+ G I + RTD Sbjct: 120 KVAVLLGYSGTGYKGMQLSETEKTIEGEL-FAAFVAAGAISKANATDPKKSSLVRCARTD 178 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + L+ E +I + +N K+S I + ++ + +K F + R Y Sbjct: 179 KGVHAAGNIVSLKLIVEDDDII--QKINE--KLSSQIRVWDILVTNKSFSSYQLCDSRIY 234 Query: 113 LYRII 117 Y I Sbjct: 235 EYLIT 239 >gi|242066426|ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor] gi|241934333|gb|EES07478.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor] Length = 567 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDS 53 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 53 KVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRAAPRRYDWARAARTDK 112 Query: 54 GVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV R +V P LNA L + I V F A+ RR Y Sbjct: 113 GVSAAAQVVSG---RFYVDPPGFIDRLNAQL--ASQIRAYGYVRVTNSFSAKKFCDRRRY 167 Query: 113 LY 114 LY Sbjct: 168 LY 169 >gi|317033787|ref|XP_001395447.2| tRNA pseudouridine synthase [Aspergillus niger CBS 513.88] Length = 517 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 15/109 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+G+GY G Q + +I+G + A F+ G I + RTD Sbjct: 49 KVAVLLGYSGTGYKGMQLSETEKTIEGEL-FAAFVAAGAISKANATDPKKSSLVRCARTD 107 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQF 101 GVHA + L+ E +I + +N K+S I + ++ + +K F Sbjct: 108 KGVHAAGNIVSLKLIVEDDDII--QKINE--KLSSQIRVWDILVTNKSF 152 >gi|134118796|ref|XP_771901.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254505|gb|EAL17254.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var. neoformans B-3501A] Length = 560 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 R ++I Y G+GY G Q Q + +I+G + A+ + V + A RTD Sbjct: 124 RCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDIARAARTD 183 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRR 110 +GVHA V ++ E K + Y+ + D I + K F+AR +A R Sbjct: 184 AGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWGWVRTVKSFNARTAADSR 243 Query: 111 SYLY 114 Y Y Sbjct: 244 IYEY 247 >gi|255553385|ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis] gi|223543132|gb|EEF44666.1| pseudouridylate synthase, putative [Ricinus communis] Length = 377 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 21/126 (16%) Query: 8 IEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGV 55 + Y G+ Y G Q+Q++ S+I+ +E AIF G + +G + RTD GV Sbjct: 60 VGYVGTDYRGLQKQEDEHSLSTIEAELECAIFKAGGILDSNYGNLHKIAWARSSRTDKGV 119 Query: 56 HALRQVAHFDL---VREWVP----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 H+L + + W + L + +N YL D I I ++ K F R Sbjct: 120 HSLATMISMKMEIPENAWKEDPNGIALAECVNYYL--PDNIRIFSILPSQKSFDPRRECN 177 Query: 109 RRSYLY 114 R Y Y Sbjct: 178 LRKYSY 183 >gi|253744705|gb|EET00865.1| Pseudouridylate synthase, putative [Giardia intestinalis ATCC 50581] Length = 507 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 77/199 (38%), Gaps = 35/199 (17%) Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 V + V + A+N +++ +TI +L + VD+ F AR S R Y+Y Sbjct: 199 VPQEVEIDYVSAIN--MRLPETIRVLGWAPVDENFSARHSTSSRRYIYTF---------- 246 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDF-----------TTFRSI--HCQAS---SPIR 170 G+ SL+ + M A LVG HDF TF + CQ P Sbjct: 247 -GQVG----SLNIQRMAEACTTLVGFHDFRNICKPSLDNVKTFERVIFSCQLEIDGQPYE 301 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRK 228 S + + + V +FL+ Q+R L +G + + L K Sbjct: 302 CEGSRAAVSEDSSLSLVVCGSAFLYHQVRCIASLLLHIGAELEPPSIISDLLDVTRFPGK 361 Query: 229 ECGPLAPPEGLYFDSVEYS 247 P+AP E L F+ EY+ Sbjct: 362 PDYPIAPGELLIFEKAEYT 380 >gi|70923191|ref|XP_734642.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56507573|emb|CAH84165.1| hypothetical protein PC300883.00.0 [Plasmodium chabaudi chabaudi] Length = 82 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 17/97 (17%) Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + I+R+YLY + + K+ + M AA+ +G HDF+ F Sbjct: 1 LNCIQRTYLY----------------FFVNKNYNIPRMNEAAKIFLGEHDFSNFCKKRKN 44 Query: 165 ASSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRS 200 S IRTI F++ N ++ SFL+ Q+ + Sbjct: 45 TISFIRTIHKFEIKRIDQNFYYFKIKGTSFLYNQVNN 81 >gi|58262434|ref|XP_568627.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans JEC21] gi|57230801|gb|AAW47110.1| pseudouridylate synthase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 560 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 R ++I Y G+GY G Q Q + +I+G + A+ + V + A RTD Sbjct: 124 RCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDIARAARTD 183 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRR 110 +GVHA V ++ E K + Y+ + D I + K F+AR +A R Sbjct: 184 AGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWGWVRTVKSFNARTAADSR 243 Query: 111 SYLY 114 Y Y Sbjct: 244 IYEY 247 >gi|254566437|ref|XP_002490329.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA [Pichia pastoris GS115] gi|238030125|emb|CAY68048.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA [Pichia pastoris GS115] Length = 509 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTDSGVH 56 +I Y G+GY G Q +I+G + +A F+ +G I + A RTD GVH Sbjct: 88 LIGYCGTGYHGMQLNPPQKTIEGDLFEA-FVESGAISRDNSNDLKKSSFMRAARTDKGVH 146 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V ++ E ++ + +N+ K+ TI + +K F R R Y Y + Sbjct: 147 AAGNVISLKMIIEDEDIL--EKINS--KLPPTIRVWGYERTNKNFDCRKMCSSRIYEYLM 202 Query: 117 IT 118 T Sbjct: 203 PT 204 >gi|328350723|emb|CCA37123.1| tRNA pseudouridine synthase A [Pichia pastoris CBS 7435] Length = 516 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTDSGVH 56 +I Y G+GY G Q +I+G + +A F+ +G I + A RTD GVH Sbjct: 95 LIGYCGTGYHGMQLNPPQKTIEGDLFEA-FVESGAISRDNSNDLKKSSFMRAARTDKGVH 153 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V ++ E ++ + +N+ K+ TI + +K F R R Y Y + Sbjct: 154 AAGNVISLKMIIEDEDIL--EKINS--KLPPTIRVWGYERTNKNFDCRKMCSSRIYEYLM 209 Query: 117 IT 118 T Sbjct: 210 PT 211 >gi|269955758|ref|YP_003325547.1| binding-protein-dependent transport systems inner membrane component [Xylanimonas cellulosilytica DSM 15894] gi|269304439|gb|ACZ29989.1| binding-protein-dependent transport systems inner membrane component [Xylanimonas cellulosilytica DSM 15894] Length = 506 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 1 MIRYCMIIEYNGSGYFG--WQRQKNGSSIQGS-IEKAIFLVTGEIVVVHGAGRTDSGVHA 57 +IRY M + +G G WQ ++ +S+ GS I + LV G IV+ G G V A Sbjct: 63 VIRYFMWLGNVLTGDLGSSWQTGQSVTSMLGSAIPSTVTLVAGSIVLAIGLGILIGMVAA 122 Query: 58 LRQVAHFDLVREWVPVIL 75 LRQ FD +V +L Sbjct: 123 LRQYTRFDYAVTFVSFVL 140 >gi|115391499|ref|XP_001213254.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624] gi|114194178|gb|EAU35878.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624] Length = 613 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 32/72 (44%), Gaps = 16/72 (22%) Query: 101 FHARFSAIRRSYLYRIITRQ----------APLALEKGRAWLIPKS----LDCENMRIAA 146 F ARFS R Y Y AP A +K A +PK LD E MR AA Sbjct: 275 FDARFSCRERQYKYFFTQPAFSPTPGPGGFAPRANDK--AGSVPKYREGWLDIEAMREAA 332 Query: 147 QHLVGRHDFTTF 158 + VGRHDF F Sbjct: 333 RMFVGRHDFRNF 344 >gi|217074404|gb|ACJ85562.1| unknown [Medicago truncatula] Length = 530 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 13/116 (11%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTDSGVHALRQ 60 Y G GY G Q+ +I+G +E+A+++ G + RTD GV A+ Q Sbjct: 62 YCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDKGVSAVGQ 121 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 V + P LN+ L I I V F A+ RR Y+Y I Sbjct: 122 VVSGRFYID--PPGFVDRLNSNL--PSQIRIFGFKRVTASFSAKKFCDRRRYVYLI 173 >gi|307102143|gb|EFN50538.1| hypothetical protein CHLNCDRAFT_138514 [Chlorella variabilis] Length = 346 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 63/262 (24%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + + + Y+G+G G Q Q++ + +I+ +E+AIF G + + R + G Sbjct: 43 KVALFVGYSGTGRRGLQMQRSSAPEETIEDVLEEAIFQAGG----ILPSNRGNLG----- 93 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + + ++ V K ++AR IRRSY Y + Sbjct: 94 ----------------------------KVRVFSVQRVSKSWNARRECIRRSYSYFVPAS 125 Query: 120 QAPLALEKGRA------WLIPKSLDCENMRIA-------AQHLVGRHDFTTFRSIH-CQA 165 LAL+ G+ L S +++A A +V RH FR I C+A Sbjct: 126 VLGLALDGGKEDQRRLHLLQHASSKKGQVQVAWKFERDDADPIVRRH----FRFIEWCRA 181 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + + + V I + + SF+ QIR VG V G LE +L Sbjct: 182 GTELEVL----VPGGQPCIHLSLQGSSFMLHQIRKMVGMAVAVARGNLPLELLEFSLATP 237 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R PLAPP L +S Sbjct: 238 ARINL-PLAPPSTLMLTGALFS 258 >gi|150865972|ref|XP_001385404.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054] gi|149387228|gb|ABN67375.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054] Length = 465 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 76/202 (37%), Gaps = 56/202 (27%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNA---YLKISDTISILNLSIVD------- 98 GRTD GV A+ QV + +++ LN LK +D I LSI++ Sbjct: 145 GRTDKGVSAMNQV---------ISLVVRSNLNEEEQLLKENDHKEIKYLSIINALLPPDI 195 Query: 99 ----------KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQ 147 +F ARFS R Y Y L K LD E M A Sbjct: 196 RMTAVCLRPPPKFDARFSCDYRHYRY-----------------LFKKHDLDIELMNEACI 238 Query: 148 HLVGRHDFTTFRSIHC--QASSPIRTIDHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGS 204 +G HDF F I Q ++ +R + + + + + +FL Q+R V Sbjct: 239 KYIGSHDFRNFCKIDGSKQITNYVREVYSMKIIHLKDDFYAVDLKGSAFLWHQVRCMVAI 298 Query: 205 LKLVGDGKWTST------DLEK 220 L L+G +T DLEK Sbjct: 299 LFLIGQKLEATTIIEDLFDLEK 320 >gi|322499857|emb|CBZ34930.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 696 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 21/130 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAI--FLVTGEIVVVHGAG---------RT 51 + + Y+GSG+ G Q Q + + ++G + +A+ + E+V AG RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIAEVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN ++ T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFEEMGQAEGICEKLN--RQLPSTVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRI 116 RR Y Y + Sbjct: 147 CNRRVYRYML 156 >gi|296412959|ref|XP_002836186.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629994|emb|CAZ80377.1| unnamed protein product [Tuber melanosporum] Length = 454 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 108/269 (40%), Gaps = 44/269 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + ++I Y G+GY G Q SI+ + +A F+ G I + RTD Sbjct: 92 KVAVLIGYCGTGYRGMQLNPPHKSIESDLFEA-FVQAGAISKANSDDPKKSSLVRCARTD 150 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E P I K +N+YL + I + + F + R Y Sbjct: 151 KGVHAAGNVISLKLIIE-DPDITEK-INSYL--PEQIRVWGIVRTVGSFSSYHQCDSRRY 206 Query: 113 LYRI-----ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y + I L K + PK L + +R + G H+F F +I + Sbjct: 207 EYLVPSHCFIPPHPKSYLAKKTYRISPKRL--QRVREGFRSYEGTHNFHNF-TIQKTFND 263 Query: 168 P-----IRTIDHFDVNSFGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 P I++ + D N + +RV +SF+ QIR VG + +V T LE+ Sbjct: 264 PSSKRFIKSFEVLDPIIINNTEWLSLRVHGQSFMMHQIRKMVGMVMMV---VRTGCPLER 320 Query: 221 ALQAQDRKECG------PLAPPEGLYFDS 243 +A CG P AP GL +S Sbjct: 321 IKEA-----CGPRVVSIPKAPSLGLLLES 344 >gi|156048366|ref|XP_001590150.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980] gi|154693311|gb|EDN93049.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980 UF-70] Length = 599 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + ++I Y G+GY G Q +I+G + KA F+ G I + RTD Sbjct: 57 KVAVMIGYAGTGYKGLQINTKEKTIEGDMFKA-FVAAGAISKANANDPKKSALVRCARTD 115 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ + +N++L D I + + F+ R Y Sbjct: 116 KGVHAAGNVLSLKLITEDPNVV--ENINSHL--PDQIRVWGIERTTGSFNCYQMCDSRWY 171 Query: 113 LYRIIT 118 Y I T Sbjct: 172 EYLIPT 177 >gi|294655697|ref|XP_002770167.1| DEHA2C04312p [Debaryomyces hansenii CBS767] gi|199430534|emb|CAG85917.4| DEHA2C04312p [Debaryomyces hansenii] Length = 528 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 18/126 (14%) Query: 5 CMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 CMI Y G+GY G Q Q N +I+G + +A F+ G I + A RTD Sbjct: 75 CMI-GYCGTGYNGMQIQNNLDVKTIEGDLFQA-FVKAGAISPENADDLKKNGFMRAARTD 132 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ + +N L D I + + +K F R R Y Sbjct: 133 KGVHAAGNVISCKLIIEDEDIL--EKINKEL--PDQIRVWGIERTNKSFDCRKMCSSRVY 188 Query: 113 LYRIIT 118 Y + T Sbjct: 189 EYLLPT 194 >gi|307105485|gb|EFN53734.1| hypothetical protein CHLNCDRAFT_136316 [Chlorella variabilis] Length = 353 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 15/79 (18%) Query: 42 IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQF 101 V + AGRTD GVHAL Q ++VR ALNA + + + + V + F Sbjct: 41 TVALAVAGRTDRGVHALGQ----EVVR---------ALNA--ERPGLLRAWHAAQVPRSF 85 Query: 102 HARFSAIRRSYLYRIITRQ 120 HA F+A R YLY + R+ Sbjct: 86 HATFAAKWRRYLYLLPLRE 104 >gi|260944536|ref|XP_002616566.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720] gi|238850215|gb|EEQ39679.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720] Length = 229 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 23/130 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHG----------A 48 MI YC G+GY G Q Q N +I+ I KA F+ G + + A Sbjct: 1 MIGYC------GTGYNGMQIQNNPDVKTIEAEIFKA-FIAAGAVSQENSTDLKKNGFMRA 53 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GVHA V L+ E ++ +N++L + I + + V++ F R Sbjct: 54 ARTDKGVHAAGNVISCKLILEDEDIM--HKINSHL--PEKIRLWGIERVNRSFDCRKLCS 109 Query: 109 RRSYLYRIIT 118 R Y Y + T Sbjct: 110 SRVYEYLLPT 119 >gi|255935685|ref|XP_002558869.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583489|emb|CAP91502.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255] Length = 548 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+G+GY G Q + +I+G + A+ V G + + A RTD Sbjct: 84 KVALLMGYSGTGYSGMQLNEQQRTIEGDLFTALVNV-GAVSKANAADPKKSSFVRCARTD 142 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V ++ E +I + +NA L S I + + K F R Y Sbjct: 143 KGVHAAGNVVSLKMIVEDEDII--QKINAEL--SPQIRVWGYEVTSKSFSCYQMCDSRVY 198 Query: 113 LY 114 Y Sbjct: 199 EY 200 >gi|315929089|gb|EFV08321.1| tRNA pseudouridine synthase II [Campylobacter jejuni subsp. jejuni 305] Length = 58 Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY + Y Sbjct: 3 ANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLYLSRICY 58 >gi|322492588|emb|CBZ27865.1| pseudouridylate synthase-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 696 Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 21/130 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAI--FLVTGEIVVVHGAG---------RT 51 + + Y+GSG+ G Q Q + + ++G + +A+ + ++V AG RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEIFEEVGQTEGICEKLNRQLPA--TVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRI 116 RR Y Y + Sbjct: 147 CNRRVYRYML 156 >gi|213401227|ref|XP_002171386.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] gi|211999433|gb|EEB05093.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] Length = 503 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 19/124 (15%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----------VVVHGAGRTD 52 + ++ Y G+GY G Q +I+G + +A F+ G + V + A RTD Sbjct: 45 KVACLVGYCGTGYHGMQLNPPNKTIEGDLFEA-FVKVGAVSSYNADDPKKVALARAARTD 103 Query: 53 SGVHALRQVAHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 GVHA V L+ E +I + + L +++ D I +N F+ R R Sbjct: 104 KGVHAAGNVITLKLILEDENLIQKVNEVLPPTIRVWDVIRTIN------SFNPRTYCESR 157 Query: 111 SYLY 114 Y Y Sbjct: 158 IYEY 161 >gi|158520883|ref|YP_001528753.1| pseudouridylate synthase-like protein [Desulfococcus oleovorans Hxd3] gi|158509709|gb|ABW66676.1| Pseudouridylate synthase-like protein [Desulfococcus oleovorans Hxd3] Length = 148 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 F F AI ++Y Y I++R A+ + AW + + L+ + +R A + G HD Sbjct: 18 FEPAFQAISKTYRYWIVSRPTSAAIGRQYAWHLSRPLEIKAIRQALPLVTGTHDL 72 >gi|146089460|ref|XP_001470389.1| pseudouridylate synthase-like protein [Leishmania infantum] gi|134070422|emb|CAM68761.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5] Length = 696 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 21/130 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAI--FLVTGEIVVVHGAG---------RT 51 + + Y+GSG+ G Q Q + + ++G + +A+ + ++V AG RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIVADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN ++ T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFEEMGQAEGICEKLN--RQLPSTVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRI 116 RR Y Y + Sbjct: 147 CNRRVYRYML 156 >gi|154300700|ref|XP_001550765.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10] gi|150856545|gb|EDN31737.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10] Length = 631 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + ++I Y G+GY G Q +I+G + KA F+ G I + RTD Sbjct: 99 KVAVMIGYAGTGYKGLQINTKEKTIEGDMFKA-FVAAGAISKANANDPKKSALIRCARTD 157 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ + +N++L D I + + F+ R Y Sbjct: 158 KGVHAAGNVLSLKLIIEDPKVV--ENINSHL--PDQIRVWGIERTTGSFNCYQMCDSRWY 213 Query: 113 LYRIIT 118 Y I T Sbjct: 214 EYLIPT 219 >gi|154274161|ref|XP_001537932.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150415540|gb|EDN10893.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 634 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 13/91 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA----------GRTD 52 + +++ Y+GSGY G Q + +I+G + A F+ G I + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSETEKTIEGDLFTA-FVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYL 83 GVHA V L+ E V+ + +N +L Sbjct: 181 KGVHAAGNVVSLKLIVEDPNVV--QKINGHL 209 >gi|198427214|ref|XP_002128771.1| PREDICTED: similar to Pseudouridine synthase 1 [Ciona intestinalis] Length = 531 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 64/267 (23%), Positives = 107/267 (40%), Gaps = 36/267 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF--LVTGEIV-----------VVHGAG 49 + M+ Y G+ Y G Q + I+ +IE +F LV ++V A Sbjct: 70 KVAMLFAYCGANYHGLQMNRGERWIK-TIEGDLFQALVDAKVVPSNCVQEPHKMTYKSAS 128 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV QVA L V L +N +L + I ++ + + F+A+ A Sbjct: 129 RTDKGVSTCGQVASLKLRLNENVVGL---INQHL--PEDIVVMAVRRTTQGFNAQLKAEG 183 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR-------HDFTTFRSI- 161 R+Y Y + T ++ I E+ + + ++ R H+FT+ + + Sbjct: 184 RTYSYTLPTFAFADYGTGNTSYKI-----TEDKLLKVKSILYRYKGTHSFHNFTSGKRMG 238 Query: 162 HCQASSPIRTIDHFDVNSFGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 A I +H D N+ I + + +SF+ QIR +G L + +G Sbjct: 239 EMSAQRFIIEFEHGDPFLVQNVEFITLTIKGQSFMLHQIRKMIGLLIAMVNGLAKEQHFI 298 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 +A + E P AP GL + V Y Sbjct: 299 RAF--SEPLEDIPKAPGTGLVLEKVHY 323 >gi|310791388|gb|EFQ26915.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001] Length = 614 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + +++ Y+G+GY G Q +I+G + KA F+ G I + RTD Sbjct: 125 KVAVMVGYSGTGYKGMQINNEEKTIEGDLFKA-FVAAGAISKANADDHKKSSLVRCARTD 183 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +NA L + I + + + F + R Y Sbjct: 184 KGVHAAGNVISLKLIIEDEDIV--DKINANL--PEQIRVWGIQRTNNSFSCYQTCDSRWY 239 Query: 113 LYRIIT 118 Y + T Sbjct: 240 EYLLPT 245 >gi|119192942|ref|XP_001247077.1| tRNA pseudouridine synthase 1, putative [Coccidioides immitis RS] Length = 597 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + G I + RTD Sbjct: 115 KVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPAL-VAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E P ++ K N +S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKLIIE-DPDLVNKVNNI---LSPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIIT 118 Y I T Sbjct: 230 EYLIPT 235 >gi|303312455|ref|XP_003066239.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105901|gb|EER24094.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 597 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + G I + RTD Sbjct: 115 KVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPAL-VAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E P ++ K N +S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKLIIE-DPDLVNKVNNI---LSPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIIT 118 Y I T Sbjct: 230 EYLIPT 235 >gi|320033682|gb|EFW15629.1| tRNA pseudouridine synthase [Coccidioides posadasii str. Silveira] Length = 597 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + G I + RTD Sbjct: 115 KVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPAL-VAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E P ++ K N +S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKLIIE-DPDLVNKVNNI---LSPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIIT 118 Y I T Sbjct: 230 EYLIPT 235 >gi|169619633|ref|XP_001803229.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15] gi|111058695|gb|EAT79815.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15] Length = 621 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 15/126 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTD 52 + ++I Y+G+GY G Q +I+G + A F+ G I + RTD Sbjct: 106 KVAVMIGYSGTGYKGMQIDNKQKTIEGDLFTA-FVAAGAISKANADDPKKSSLVRCARTD 164 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ + +N++L S+ I + + F + R Y Sbjct: 165 KGVHAAGNVISLKLIIEEEDIV--EKINSHL--SEQIRVWGIQRTTGSFSCYQACDSRWY 220 Query: 113 LYRIIT 118 Y I T Sbjct: 221 EYLIPT 226 Searching..................................................done Results from round 2 >gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] gi|254039972|gb|ACT56768.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] Length = 247 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 247/247 (100%), Positives = 247/247 (100%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ Sbjct: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ Sbjct: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF Sbjct: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY Sbjct: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 Query: 241 FDSVEYS 247 FDSVEYS Sbjct: 241 FDSVEYS 247 >gi|315122856|ref|YP_004063345.1| tRNA pseudouridine synthase A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496258|gb|ADR52857.1| tRNA pseudouridine synthase A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 247 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 203/247 (82%), Positives = 222/247 (89%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MIRYC+IIEY+GSGY GWQRQKNG SIQG IEKAIFLVTGE + V+GAGRTDSGVHALRQ Sbjct: 1 MIRYCLIIEYDGSGYVGWQRQKNGVSIQGEIEKAIFLVTGESMTVYGAGRTDSGVHALRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDLVREWVP LCKALNA+L IS+ ISIL L +VD++FHARFSAIRRSYLYRIITRQ Sbjct: 61 VAHFDLVREWVPEKLCKALNAHLNISNDISILELCVVDEKFHARFSAIRRSYLYRIITRQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALEKGRAW PK LDCE MR+AAQHL+G+HDFTTFRS+ CQA SPIRTID D+N Sbjct: 121 APLALEKGRAWWFPKDLDCEMMRVAAQHLIGKHDFTTFRSVQCQALSPIRTIDRLDINRL 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++IEIRVVARSFLHTQIRSFVGSLKLVGD KWTS DL+KAL+AQDRK CGPL+P EGLY Sbjct: 181 GDMIEIRVVARSFLHTQIRSFVGSLKLVGDRKWTSDDLQKALKAQDRKACGPLSPSEGLY 240 Query: 241 FDSVEYS 247 FDSVEYS Sbjct: 241 FDSVEYS 247 >gi|222147430|ref|YP_002548387.1| tRNA pseudouridine synthase A [Agrobacterium vitis S4] gi|254789600|sp|B9JQX0|TRUA_AGRVS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221734420|gb|ACM35383.1| tRNA pseudouridine synthase A [Agrobacterium vitis S4] Length = 259 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 146/248 (58%), Positives = 182/248 (73%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ NG S+QG++E A+ +TGE V + GAGRTDSGVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQDNGPSVQGALEAAVLGLTGETVAIRGAGRTDSGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL+R+W+P L ALNA+L + ISIL V F ARFSA++R YLYRI++R Sbjct: 61 VAHVDLLRQWIPYKLRNALNAHLAQAGQAISILAAEAVPDAFDARFSALKRHYLYRIMSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + LALE RAW + K LD E M AAQ LVG HDFTTFRS+HCQA SP+RT+D DV+ Sbjct: 121 PSRLALEANRAWWVSKPLDHEAMHAAAQMLVGNHDFTTFRSVHCQAISPVRTLDRLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LK+ G+GK T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRASAQSFLHNQIRSFAGTLKMAGEGKMTPEDVRAALEARDRKACGPVAPPQGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFLQVDYP 248 >gi|15964174|ref|NP_384527.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti 1021] gi|307301319|ref|ZP_07581081.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti BL225C] gi|30913403|sp|Q92SH4|TRUA_RHIME RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15073350|emb|CAC41858.1| Probable tRNA pseudouridine synthase A [Sinorhizobium meliloti 1021] gi|306903775|gb|EFN34362.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti BL225C] Length = 247 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 155/247 (62%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ NG S+QG+IEKA+ +T E V + GAGRTDSGVHA Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW L ALNA+L ++ + +SIL+++ F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKSYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK LD + M AAQ LVG HDFTTFRS HCQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATSPLRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APP+GL Sbjct: 181 AGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|20808627|ref|NP_623798.1| tRNA pseudouridine synthase A [Thermoanaerobacter tengcongensis MB4] gi|24212532|sp|Q8R7Y7|TRUA_THETN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|20517260|gb|AAM25402.1| Pseudouridylate synthase (tRNA psi55) [Thermoanaerobacter tengcongensis MB4] Length = 240 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 101/242 (41%), Positives = 144/242 (59%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +IIEY+G+ Y GWQ QKN ++Q +EKAI VTGE V + G+ RTD+GVHAL QVA+F Sbjct: 1 MLIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTGEKVNLIGSSRTDTGVHALYQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P L ALNA L D + ++ VDK FHAR+SA + Y Y I+ RQ P+ Sbjct: 61 KTKTKIPPEKLPYALNAVL--PDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPMP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + W +P LD E M+ AA G HDF+ F++ + +P++TI V G+LI Sbjct: 119 TMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAFKASGNKKVNPVKTIFDLTVEKEGDLI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +I V A FL+ +R VG+L VG GK + ++ ++++DR + G APP+GLY + Sbjct: 179 KIEVEADGFLYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDRTKAGITAPPQGLYLVRI 238 Query: 245 EY 246 Y Sbjct: 239 VY 240 >gi|307317990|ref|ZP_07597427.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti AK83] gi|306896392|gb|EFN27141.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti AK83] Length = 247 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 155/247 (62%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ NG S+QG+IEKA+ +T E V + GAGRTDSGVHA Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW L ALNA+L ++ + +SIL+++ F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKSYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK LD + M AAQ LVG HDFTTFRS HCQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATSPLRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APP+GL Sbjct: 181 AGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALKARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|154505512|ref|ZP_02042250.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149] gi|153794170|gb|EDN76590.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +++ + +A+ +TGE + V GA RTDSGVHAL Sbjct: 1 MKRLKLTVAYDGTNYCGWQIQPNGITVEEVLNRALRKLTGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + ALN L D I ++ V +H R+ +++Y Y I+ + Sbjct: 61 VAVFDSETSIPPERISYALNQRL--PDDIVVIRSEEVSADWHPRYCNSKKTYEYHILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + LD E M+ AAQ+LVG HDF +F ++ +RTI D+ Sbjct: 119 IPDPTRRLTRYFVSFDLDIEKMKKAAQYLVGTHDFVSFCNVRTDVEDTVRTIYSLDILPV 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R VG+L VG G +T +++ L+A++RK G APP+GL+ Sbjct: 179 GDEITIRIQGNGFLYNMVRIIVGTLVRVGRGFYTPEQVQEILEAKNRKAAGVTAPPQGLF 238 Query: 241 FDSVEYS 247 +EY Sbjct: 239 LVGIEYE 245 >gi|150395284|ref|YP_001325751.1| tRNA pseudouridine synthase A [Sinorhizobium medicae WSM419] gi|166229839|sp|A6U5I6|TRUA_SINMW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150026799|gb|ABR58916.1| tRNA pseudouridine synthase A [Sinorhizobium medicae WSM419] Length = 247 Score = 321 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 152/247 (61%), Positives = 188/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +I+EY+G+ Y GWQRQ NG S+QG+IEKA+ +TGE V V GAGRTDSGVHA Q Sbjct: 1 MPRFRLIVEYDGTDYVGWQRQDNGPSVQGAIEKAVLSLTGETVRVRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R W P L ALNA+L ++ + +SIL + F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTRAWKPYTLQNALNAHLSLAGERVSILEVEEAAADFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK+LD + M AAQ L+G HDFTTFRS +CQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKALDHDAMHEAAQRLLGHHDFTTFRSANCQATSPMRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF GSLKLVG+ KWT +L+ AL+A+DRK CGP+APP+GL Sbjct: 181 TGDLIEIRASAQSFLHNQIRSFAGSLKLVGESKWTPDNLQAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|325291802|ref|YP_004277666.1| tRNA pseudouridine synthase A [Agrobacterium sp. H13-3] gi|325059655|gb|ADY63346.1| tRNA pseudouridine synthase A [Agrobacterium sp. H13-3] Length = 266 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 148/248 (59%), Positives = 186/248 (75%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G+ YFGWQRQ NG S+QG++E A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGTPYFGWQRQDNGPSVQGALEAAVRSLTGETVSIRGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R+W P L ALNA+L + +S+++++ V + F ARFSA+RR YLYRII R Sbjct: 61 VAHVDLSRDWAPYKLRNALNAHLAMAKEAVSVIDVTAVTEDFDARFSALRRHYLYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +A LALE RAW + K LD E M AAQ LVGRHDFTTFRS+HCQASSP+RT+D DV Sbjct: 121 KARLALEHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQASSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LK+ G+G T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRATAQSFLHNQIRSFAGTLKMAGEGSMTPEDVRAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFMQVDYP 248 >gi|325662523|ref|ZP_08151126.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] gi|325471219|gb|EGC74444.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] Length = 249 Score = 321 bits (822), Expect = 8e-86, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G+ Y GWQ Q NG +++ I KA+ +TGE + V GA RTDSGVHAL VA Sbjct: 5 RIKLTIAYDGTNYCGWQVQPNGITVEEVINKALCKLTGEDIAVIGASRTDSGVHALGNVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 FD P + ALN L D I I+ V FH R+ ++Y Y II + P Sbjct: 65 VFDSATSIPPERIAMALNQRL--PDDIVIVKSEEVAPDFHPRYCDCEKTYEYHIINTRTP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + ++ + + LD E M+ AA +LVG HDF +F ++ Q +RT+ +V G Sbjct: 123 IPTKRLTNYFVSYDLDVERMQQAADYLVGEHDFVSFCNVRTQVEDTVRTVTELEVLREGE 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I IR+ FL+ +R VG+L VG G +T +++ L+A+DRK G AP GL Sbjct: 183 EITIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRKAAGVTAPAHGLMLV 242 Query: 243 SVEYS 247 + Y Sbjct: 243 EIRYP 247 >gi|23016535|ref|ZP_00056290.1| COG0101: Pseudouridylate synthase [Magnetospirillum magnetotacticum MS-1] Length = 256 Score = 320 bits (821), Expect = 9e-86, Method: Composition-based stats. Identities = 123/247 (49%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ G S+QG +E+A+ +TG ++ AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGVLEQAVEKLTGSPCTINAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R++ + ALN ++K ++++ +V FHARFSA+ RSYLYRI+ R+ Sbjct: 61 VAHVDLPRDYPADTVRDALNYHMK-PKPVAVVAAELVGDDFHARFSAVGRSYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLAL++ RAW +P SLD E M A+ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 120 APLALDQHRAWWVPVSLDAEAMAEGARRLLGHHDFTTFRASECQAKSPMKTLDVLDVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH Q+R+ VG+LKLVG+GKW+ D+ +AL A DR + GP AP GL Sbjct: 180 GEEIRIIAEARSFLHHQVRNMVGTLKLVGEGKWSPDDMARALAACDRTKGGPTAPAAGLC 239 Query: 241 FDSVEYS 247 V Y Sbjct: 240 LTGVSYP 246 >gi|327191110|gb|EGE58158.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CNPAF512] Length = 266 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 154/248 (62%), Positives = 192/248 (77%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFLQVDYP 248 >gi|83309340|ref|YP_419604.1| pseudouridylate synthase [Magnetospirillum magneticum AMB-1] gi|123768092|sp|Q2WAT0|TRUA_MAGSA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|82944181|dbj|BAE49045.1| Pseudouridylate synthase [Magnetospirillum magneticum AMB-1] Length = 256 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 123/247 (49%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ G S+QG +EKA+ + G +H AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGILEKAVEKLCGVPCTLHAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R++ + ALN ++K ++++ +VD+ FHARFSA+ R+YLYRI+ R+ Sbjct: 61 VAHVDLPRDYPADTVRDALNYHMK-PKPVAVVAAELVDEDFHARFSAVGRAYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLAL++ RAW +P +LD E M A+ L+G HDF+TFR+ CQA SP++T+D DV Sbjct: 120 APLALDQHRAWWVPVALDAEAMAEGARRLLGHHDFSTFRASECQAKSPMKTLDVLDVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH Q+R+ VG+LKLVG+GKW+ D+ K L+A+DR + GP AP GL Sbjct: 180 GEEIRIVAEARSFLHHQVRNMVGTLKLVGEGKWSPDDMAKVLEARDRTKGGPTAPAAGLV 239 Query: 241 FDSVEYS 247 V YS Sbjct: 240 LTGVSYS 246 >gi|331086292|ref|ZP_08335372.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406058|gb|EGG85581.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 249 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G+ Y GWQ Q NG +++ I KA+ +TGE + V GA RTDSGVHAL VA Sbjct: 5 RIKLTIAYDGTNYCGWQVQPNGITVEEVINKALCKLTGEDIAVIGASRTDSGVHALGNVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 FD P + ALN L D I I+ V FH R+ ++Y Y II + P Sbjct: 65 VFDSATSIPPERIAMALNQRL--PDDIVIVKSEEVATDFHPRYCDCEKTYEYHIINTRTP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + ++ + + LD E M+ AA +LVG HDF +F ++ Q +RT+ +V G Sbjct: 123 IPTKRLTNYFVSYDLDVERMQQAADYLVGEHDFVSFCNVRTQVEDTVRTVTELEVLREGE 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I IR+ FL+ +R VG+L VG G +T +++ L+A+DRK G AP GL Sbjct: 183 EITIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRKAAGVTAPAHGLMLV 242 Query: 243 SVEYS 247 + Y Sbjct: 243 EIRYP 247 >gi|167036834|ref|YP_001664412.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039553|ref|YP_001662538.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514] gi|256752665|ref|ZP_05493517.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus CCSD1] gi|300915196|ref|ZP_07132511.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561] gi|307725120|ref|YP_003904871.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513] gi|320115256|ref|YP_004185415.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687621|sp|B0K5S6|TRUA_THEPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687718|sp|B0KCN3|TRUA_THEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166853793|gb|ABY92202.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514] gi|166855668|gb|ABY94076.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748485|gb|EEU61537.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus CCSD1] gi|300888920|gb|EFK84067.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561] gi|307582181|gb|ADN55580.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513] gi|319928347|gb|ADV79032.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 244 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ Sbjct: 61 VANFKTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + Sbjct: 119 FQMPTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I I + A FL+ +R VG+L VG GK ++ L+++DR + G APP+GLY Sbjct: 179 EDFINIEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LIKIIY 244 >gi|86356072|ref|YP_467964.1| tRNA pseudouridine synthase A [Rhizobium etli CFN 42] gi|86280174|gb|ABC89237.1| tRNA pseudouridine synthase A protein [Rhizobium etli CFN 42] Length = 267 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 154/248 (62%), Positives = 193/248 (77%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ + +SIL+++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVAAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDDEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFLQVDYP 248 >gi|190890088|ref|YP_001976630.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CIAT 652] gi|190695367|gb|ACE89452.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CIAT 652] Length = 266 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 152/248 (61%), Positives = 192/248 (77%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W P L A+NA+L+++ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKQWSPYQLQNAMNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFLQVDYP 248 >gi|302388745|ref|YP_003824566.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM 16646] gi|302199373|gb|ADL06943.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM 16646] Length = 243 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EY+G+ Y GWQ+Q N S+Q +EKAI+ +TGE V + GAGRTD+GVHA QV Sbjct: 1 MNVKILLEYDGTNYHGWQKQNNALSVQEVLEKAIYALTGERVSIIGAGRTDAGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F L A+N+ L + I++ V FHAR+SA + Y Y I Sbjct: 61 ANFRTNTRIPVERLPYAINSKL--PEDIAVKGAEAVPDDFHARYSAKAKVYTYSIYNAPF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L + ++ P LD E MR AA+ +G HDF FR+ + +R I DV G Sbjct: 119 PSPLLRRYSYFFPLPLDVEAMRRAAKAFIGVHDFAAFRASGSSVKTSVRNITRLDVKKCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ I V A FL+ +R G+L VG GK ++ ++++DR+ G P GL Sbjct: 179 KLLTIEVEADGFLYNMVRIIAGTLLEVGTGKKDPEEIPSIIESRDRERAGVTLPAHGLCL 238 Query: 242 DSVEY 246 + V Y Sbjct: 239 EKVIY 243 >gi|125975420|ref|YP_001039330.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405] gi|256005284|ref|ZP_05430250.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360] gi|281419381|ref|ZP_06250396.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20] gi|166991160|sp|A3DJK8|TRUA_CLOTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125715645|gb|ABN54137.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405] gi|255990720|gb|EEU00836.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360] gi|281407001|gb|EFB37264.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20] gi|316939545|gb|ADU73579.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313] Length = 244 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ+QKN ++Q +IE+AI +TGE V + GA RTD GVHAL Q Sbjct: 1 MRNVKLIIEYDGTNYHGWQKQKNAKTVQDTIERAIKGLTGEKVDLIGASRTDFGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN L D I I VD FHAR+ A + Y Y I Q Sbjct: 61 VANFITNSGIPGDRFSYALNRML--PDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P AL + R + + LD E+M+ AA + +G HDF+ FRS A + +RTI + Sbjct: 119 FPSALLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAFRSSGSSAKTSVRTITDVSLERE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ + FL+ +R VG+L VG GK + ++ + ++++ RK G AP EGLY Sbjct: 179 DKIVKFEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRTAPAEGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVEVYY 244 >gi|210618029|ref|ZP_03291864.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787] gi|210149022|gb|EEA80031.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787] Length = 245 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +++ + KA+ +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTIAYDGTNYCGWQVQPNGITVEEVVNKALKKLTGEDIQVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + ALN L + I I+ V + FH R+ ++Y Y I+ + Sbjct: 61 VAVFDTHTTIPPERISYALNQRL--PEDIVIVKSEEVAEDFHPRYCDCSKTYEYHILNMR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ ++ + + LD E MR AA +L+G HDF +F ++ +RT+ ++ Sbjct: 119 IPIPTKRLTNYFVSYDLDVEKMRKAAGYLIGEHDFVSFCNVRTDVEDTVRTVTELEILKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G + +++ L+A+DRK G APP GL Sbjct: 179 GEEITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPEKVKEILEAKDRKAAGVTAPPHGLI 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 LAEIRYE 245 >gi|227820646|ref|YP_002824616.1| tRNA pseudouridine synthase A [Sinorhizobium fredii NGR234] gi|254764861|sp|C3MF26|TRUA_RHISN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|227339645|gb|ACP23863.1| tRNA pseudouridine synthase A [Sinorhizobium fredii NGR234] Length = 247 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 160/247 (64%), Positives = 193/247 (78%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ+NG S+QG+IEKA+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW L ALNA+L ++ + +SIL+ + V +F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKTHTLRNALNAHLALAAERVSILDAAEVPPEFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK+LD E M AAQHLVG HDFTTFRS HCQA+SP+RTID DV Sbjct: 121 RSPLALEARRAWWVPKTLDHEAMHEAAQHLVGHHDFTTFRSAHCQANSPLRTIDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APPEGL Sbjct: 181 SGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLKTALEARDRKACGPVAPPEGL 240 Query: 240 YFDSVEY 246 +F V+Y Sbjct: 241 FFMQVDY 247 >gi|260589149|ref|ZP_05855062.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|331082565|ref|ZP_08331690.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] gi|260540569|gb|EEX21138.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|330400543|gb|EGG80173.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] Length = 245 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG ++Q + + + TGE + GA RTD+GVHAL Sbjct: 1 MKRVKLTVAYDGTNYCGWQVQPNGITVQEVLNQCLSEFTGENIETIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I I VD FH R+ +++Y YRI+ + Sbjct: 61 VAVFDTEMRMPGDKFSFALNQRL--PEDIRIQKSEEVDADFHPRYVKSQKTYEYRILNCR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + LD + M+ AA +L+G HDF +F Q + +RT+ + Sbjct: 119 FPIPTERFYSHFTYIPLDVDKMKEAASYLIGEHDFKSFCGTGAQVKTTVRTVKEIQIEKS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R G+L +G G + +++ L+A+DRK+ GP AP GL Sbjct: 179 GDRITIRITGEGFLYNMVRIIAGTLMDIGGGLYPPEKMKEILEAKDRKKAGPTAPARGLT 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LMKIQY 244 >gi|295109363|emb|CBL23316.1| pseudouridylate synthase I [Ruminococcus obeum A2-162] Length = 246 Score = 318 bits (815), Expect = 5e-85, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + A+ + GE + + GA RTD+GVHAL Sbjct: 1 MKRVGLVVAYDGTNYSGWQIQPNGITIQGVLNDALSDLLGEKIEIMGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTNTRIPGEKISYALNQRL--PEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD E MR A +L+GRHDF +F Q S +RTI DV Sbjct: 119 FPVPTERLYSYFYHYKLDIEKMREATSYLIGRHDFASFCGTGAQVKSTVRTITGIDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++K L A DR GP AP GL Sbjct: 179 GDIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|307266981|ref|ZP_07548497.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1] gi|306917966|gb|EFN48224.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1] Length = 244 Score = 317 bits (814), Expect = 6e-85, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q+N ++Q ++KAI VTGE V + GA RTD+GVHAL Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ Sbjct: 61 VANFRTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ + W I L E M+ AA +L+G HDF+ F++ +S IRT+ + Sbjct: 119 FPMPTMRNYCWHISYPLSIEKMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ +R VG+L VG GK ++ L+++DR + G APP+GLY Sbjct: 179 EEFINIEIEANGFLYNMVRIIVGTLSYVGLGKIEENEVYDILKSRDRTKAGITAPPQGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LIKIMY 244 >gi|319403559|emb|CBI77141.1| tRNA pseudouridine synthase A [Bartonella rochalimae ATCC BAA-1498] Length = 247 Score = 317 bits (813), Expect = 8e-85, Method: Composition-based stats. Identities = 128/247 (51%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ + +EY+GS Y GWQRQKN +IQGSIE AIF +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MVRFKLTLEYDGSNYAGWQRQKNLRTIQGSIENAIFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + I++LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTNTVRDALNAHLQKQGEDIAVLNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS +CQA SP+RT++ D+ Sbjct: 121 RSPPALNTKRVWWLPKPLDADAMHKAAQKLVGQHDFTTFRSAYCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGDEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHARNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLMKVDY 247 >gi|304315974|ref|YP_003851119.1| tRNA pseudouridine synthase A [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777476|gb|ADL68035.1| tRNA pseudouridine synthase A [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 317 bits (813), Expect = 9e-85, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++IEY+G+ Y GWQ QKN +IQ +I KAI +T E V + G+ RTD+GVHAL Q Sbjct: 5 MRNIVLVIEYDGTNYHGWQIQKNVVTIQETITKAIKKITNEDVDLIGSSRTDAGVHALHQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + ALN+ L I I + D FH+R+SA + Y Y I R+ Sbjct: 65 VANFKTCTNIPTSKIPNALNSVL--PADIVIKDAFEADMDFHSRYSAKGKRYKYIIYNRR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + K +W I KSLD E MR + ++L G HDF+ F++ SP+RT+ + Sbjct: 123 FSSPILKNYSWHISKSLDVEKMRESLKYLEGTHDFSAFKASGSSVKSPVRTVRDISLKKN 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +E + A FL+ +R VG++ VG GK D+++ L +++R G APP+GL+ Sbjct: 183 GFNVEFEIEADGFLYNMVRIIVGTIVDVGLGKINPIDVKEILDSKNRCMAGKTAPPQGLF 242 Query: 241 FDSVEY 246 + Y Sbjct: 243 LTKIYY 248 >gi|209547671|ref|YP_002279588.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238057734|sp|B5ZN21|TRUA_RHILW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209533427|gb|ACI53362.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 268 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 150/248 (60%), Positives = 190/248 (76%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL + W P L ALNA+L+++ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKAWSPYQLQNALNAHLRLAGERVSILDVEAVAEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVGRHDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFLQVDYP 248 >gi|241202830|ref|YP_002973926.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856720|gb|ACS54387.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 272 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 150/248 (60%), Positives = 190/248 (76%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V+V GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGHSVQGAIEAAVLSLTGETVLVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ + +SIL + + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILEVEAAPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVG+HDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGKHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 NGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFMQVDYP 248 >gi|116250203|ref|YP_766041.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. viciae 3841] gi|115254851|emb|CAK05925.1| putative tRNA pseudouridine synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 272 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 150/248 (60%), Positives = 190/248 (76%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W P L ALNA+L+I+ + +S+L++ + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKDWSPYQLQNALNAHLRIAGERVSVLDVEAAPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVGRHDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 RGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALKARDRKACGPVAPPDGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFMQVDYP 248 >gi|117619854|ref|YP_857188.1| tRNA pseudouridine synthase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166228676|sp|A0KLN7|TRUA_AERHH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|117561261|gb|ABK38209.1| tRNA pseudouridine synthase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 269 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +EKA+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQEELEKALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTDANRAEGAWTLGLNSNL--PPDIAVRWVKQVDEGFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +++D + M A Q L+G HDF+TFR++ CQ+++P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETIDADLMHQAGQSLLGEHDFSTFRAVACQSNTPWRNVTHLCVSRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR GP A GLY Sbjct: 179 PYIVLDIKANAFLHHMVRNITGSLLLVGQGLQPVEWIAEVLAARDRNLAGPTAKAGGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|326390628|ref|ZP_08212183.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW 200] gi|325993306|gb|EGD51743.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW 200] Length = 244 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ Sbjct: 61 VANFKTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W I L E M+ AA +L+G HDF+ F++ +S IRT+ + Sbjct: 119 FQMPTMRNYCWHIDYPLSIEKMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY Sbjct: 179 EDFINIEIEANGFLYNMVRIIVGTLSYVGLGKIEVNEVYDILTSRDRTKAGITAPPQGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LIKIMY 244 >gi|153813476|ref|ZP_01966144.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174] gi|149830420|gb|EDM85512.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174] Length = 250 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + A+ + GE + + GA RTD+GVHAL Sbjct: 5 MKRVGLVVAYDGTNYSGWQIQPNGITIQGVLNDALTDLLGEKIEIMGASRTDAGVHALGN 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 65 VAVFDTNTRIPGEKISYALNQRL--PEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD + MR A +L+GRHDF +F Q S +RT+ D+ Sbjct: 123 FPVPTERLYSYFYHYKLDVDKMREATSYLIGRHDFASFCGTGAQVKSTVRTLTGIDIWRD 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++K L A DR GP AP GL Sbjct: 183 GDIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLT 242 Query: 241 FDSVEY 246 +E+ Sbjct: 243 LMGIEF 248 >gi|153816265|ref|ZP_01968933.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756] gi|317501758|ref|ZP_07959944.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088721|ref|ZP_08337631.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] gi|145846448|gb|EDK23366.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756] gi|316896791|gb|EFV18876.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407244|gb|EGG86747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] Length = 271 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +++ + KA+ +T E V V GA RTD+GVHA Sbjct: 1 MRRIKLTVAYDGTDYCGWQIQPNGITVEEVLNKALSDLTKETVKVIGASRTDAGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + A+NA L D I ++ V +H R+ ++Y Y I+ R+ Sbjct: 61 VAVFDTKSPIPPERIAYAVNALL--PDDIVVVRSEEVGCDWHPRYQNSIKTYEYTIVNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + +W + LD ++M+ AA++ +G HDF TF S+H + +R ID DV Sbjct: 119 MPDPLRRRDSWFVSFPLDIDDMKKAARYFIGEHDFKTFCSVHTGVKTTVRRIDSLDVEKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I+IR+ FL+ +R G+L VG G + +++++ L+ ++R G APP+GL Sbjct: 179 GERIKIRISGNGFLYNMVRIIAGTLVEVGRGAFAPSEVKEMLEQKERGRAGATAPPQGLV 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 LLGIVYD 245 >gi|299132601|ref|ZP_07025796.1| tRNA pseudouridine synthase A [Afipia sp. 1NLS2] gi|298592738|gb|EFI52938.1| tRNA pseudouridine synthase A [Afipia sp. 1NLS2] Length = 245 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 130/246 (52%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ + GWQ Q NG S+QG++E A+ +TG V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGTPFCGWQYQDNGPSVQGALEDAVMAMTGSRVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+++ I +L+ IV F ARFSA++R Y+YRI R+ Sbjct: 61 VAHIDLEKTYRADRVRDALNAHVR-PHPIGVLSAEIVPDTFEARFSALKRHYIYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ GRAW + + LD M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDAGRAWRVARPLDVAAMNEAAQVLIGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+WT+ D+ KAL A++R CGP+APP+GLY Sbjct: 180 GDTVNIVTSARSFLHSQVRSMVGSLVWVGHGRWTAADMRKALDARNRAACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|240948735|ref|ZP_04753107.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305] gi|240296951|gb|EER47529.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305] Length = 262 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ++ S+Q +E+A+ V V V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQESVESVQQKLEEALSTVANSPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V + FHARFSA R Y Y I R+ Sbjct: 61 VHFETDANRPLQAWCFGTNAHL--PDDIAVKWAVEVPEDFHARFSATARRYRYIIFNRKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M A Q+L+G +DF++FR+ CQ+ +P R I H +V+ G Sbjct: 119 RSAILPKGVSHYHVDLDHEKMHEAGQYLLGENDFSSFRAAKCQSHTPWRNIHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 179 AYIIVDIQANAFVHHMVRNIVGSLIEVGQGNQPPEWIKWLLEQKDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|222084710|ref|YP_002543239.1| tRNA pseudouridine synthase A [Agrobacterium radiobacter K84] gi|221722158|gb|ACM25314.1| tRNA pseudouridine synthase A [Agrobacterium radiobacter K84] Length = 266 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 156/247 (63%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ NG S+QG+IE+AI +TGE V GAGRTDSGVHA+ Q Sbjct: 2 MPRYRMTVEYDGIPYVGWQRQNNGPSVQGAIERAILSLTGETASVRGAGRTDSGVHAVGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ ++ILN+ VD F ARFSAIRR YLYRII R Sbjct: 62 VTHADLSKEWKPHTLRNALNAHLRLAGDRVAILNVMEVDASFDARFSAIRRHYLYRIIVR 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE GRAW + K +D E M AAQ LVGRHDFTTFRS+HCQA+SP+RT+D DV Sbjct: 122 RAPLALEAGRAWWVAKDMDHEVMHTAAQTLVGRHDFTTFRSVHCQANSPVRTLDRLDVTR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+ AL+A+DRK CGP+APP+GL Sbjct: 182 SGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVRTALEARDRKACGPVAPPDGL 241 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 242 YFMQVDY 248 >gi|145299467|ref|YP_001142308.1| tRNA pseudouridine synthase A [Aeromonas salmonicida subsp. salmonicida A449] gi|166228677|sp|A4SNT8|TRUA_AERS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|142852239|gb|ABO90560.1| tRNA pseudouridine synthase A [Aeromonas salmonicida subsp. salmonicida A449] Length = 269 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +EKA+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQAELEKALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTHAIRSESAWTLGLNSNL--PPDIAVRWVKEVDETFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +++D M +A Q L+G DFT+FR+I CQ+ +P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETIDAALMHLAGQCLLGEQDFTSFRAIGCQSKTPWRNVTHLCVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR + GP A GLY Sbjct: 179 PYIVLDIRANAFLHHMVRNITGSLLLVGQGLKPVEWIAELLAAKDRNQAGPTAKAGGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|303240936|ref|ZP_07327447.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] gi|302591522|gb|EFL61259.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] Length = 245 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q N ++Q ++EKAI+ +TGE++ ++G+ RTD GVHA Q Sbjct: 1 MKNVKLIIEYDGTNYHGWQSQSNAKTVQETVEKAIYGLTGEVININGSSRTDQGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN L + I I V FHAR+ A + Y Y I Sbjct: 61 VANFFTKSNIPHDRFSYALNRML--PEDIIIRKSEEVSMDFHARYCAKGKKYRYLIYNSS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P A+ + R++ + +LD ++M+ A G HDF+ F++ + +RTI +++ Sbjct: 119 FPSAIFRNRSYHVSHNLDMDSMKKAIPFFKGTHDFSAFKATGSSVKTSVRTIFDVNLSRA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I V FL+ +R VG+L VG G+ + ++ +++ DRK G APP+GLY Sbjct: 179 EDNIWFEVSGDGFLYNMVRIMVGTLVDVGMGRIKAEEIPGIIESCDRKRAGRTAPPQGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LVEVYYE 245 >gi|291548427|emb|CBL21535.1| pseudouridylate synthase I [Ruminococcus sp. SR1/5] Length = 245 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + + + GE + GA RTD+GVHAL Sbjct: 1 MKRVGLVVAYDGTKYSGWQTQPNGITIQGVLNDTLSELLGEKIETIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTESRIPGEKFSYALNQRL--PEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD + M+ A +L+GRHDF +F Q + IRT+ DV Sbjct: 119 FPVPTERLYSYFYHYKLDVDKMKEATSYLIGRHDFASFCGSGAQVKTTIRTVTSMDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IR+ FL+ +R G+L +G+G++ ++K L+A DR GP AP +GL Sbjct: 179 GDMVTIRISGTGFLYNMVRIISGTLIEIGNGQYPPERMDKILKACDRGAAGPTAPAQGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|240849747|ref|YP_002971135.1| tRNA pseudouridine synthase A [Bartonella grahamii as4aup] gi|240266870|gb|ACS50458.1| tRNA pseudouridine synthase A [Bartonella grahamii as4aup] Length = 247 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 132/247 (53%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ ++QG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAKLHTVQGALEQAIFSFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W P + ALNA L+ + ISILN+ V F ARFSA++R Y+++I+ R Sbjct: 61 VAHVDFIKNWHPHTVRDALNALLRKQGEAISILNVQNVPDDFDARFSAVKRHYIFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK L+ E M AAQ LVG HDFTTFRS HCQA SPIRT+D D+ Sbjct: 121 RSPPALNAKRVWWLPKPLNAEAMHEAAQKLVGEHDFTTFRSAHCQAKSPIRTLDRLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKHCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|319898267|ref|YP_004158360.1| tRNA pseudouridine synthase A [Bartonella clarridgeiae 73] gi|319402231|emb|CBI75764.1| tRNA pseudouridine synthase A [Bartonella clarridgeiae 73] Length = 247 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 130/247 (52%), Positives = 166/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ N +IQGSIE+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQANLRTIQGSIEQAIFHFSGQKLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + ISILN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTHTVRDALNAHLQKQGEDISILNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P L R W +PK LD + M AAQ LVG+HDFTTFRS HCQA SPIRT++ D+ Sbjct: 121 RSPPVLNAKRVWWLPKPLDADAMHKAAQRLVGQHDFTTFRSAHCQAKSPIRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 KGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHAKNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLIKVDY 247 >gi|319404987|emb|CBI78590.1| tRNA pseudouridine synthase A [Bartonella sp. AR 15-3] Length = 247 Score = 314 bits (806), Expect = 5e-84, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQK+ +IQGSIEKA+F +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQKSLRTIQGSIEKAVFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W I+ ALNA+L+ + I +LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKHWNTHIVRDALNAHLQKQGEDIVVLNVQSVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS HCQA SP+RT++ D+ Sbjct: 121 RSPPALNAKRVWWLPKPLDADAMHKAAQRLVGQHDFTTFRSAHCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGEEIVLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHAKNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLIKVDY 247 >gi|257464802|ref|ZP_05629173.1| tRNA pseudouridine synthase A [Actinobacillus minor 202] gi|257450462|gb|EEV24505.1| tRNA pseudouridine synthase A [Actinobacillus minor 202] Length = 262 Score = 314 bits (806), Expect = 6e-84, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ++ S+Q +E+A+ +V V V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQESVESVQQKLEEALSIVANSPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + C NA+L D I++ V + FHARFSA R Y Y I R+ Sbjct: 61 VHFETEAKRPLQAWCFGTNAHL--PDDIAVKWAVEVPEDFHARFSATARRYRYIIFNRKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M A Q+L+G +DF++FR+ CQ+ +P R I H +V+ G Sbjct: 119 RSAILPKGVSHYHVDLDHEKMHEAGQYLLGENDFSSFRAAKCQSHTPWRNIHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 179 AYIIVDIQANAFVHHMVRNIVGSLIEVGQGNQPPEWIKWLLEQKDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|163867374|ref|YP_001608568.1| tRNA pseudouridine synthase A [Bartonella tribocorum CIP 105476] gi|189029992|sp|A9ILJ7|TRUA_BART1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|161017015|emb|CAK00573.1| tRNA pseudouridine synthase A [Bartonella tribocorum CIP 105476] Length = 247 Score = 314 bits (806), Expect = 6e-84, Method: Composition-based stats. Identities = 136/247 (55%), Positives = 171/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W P + ALNA L + S+ ISILN+ V F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFIKNWPPHTVRDALNALLRQQSEAISILNVENVPDDFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ D+ Sbjct: 121 RSPPALNAKRVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDIQK 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFIYAKARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|325265188|ref|ZP_08131914.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324029592|gb|EGB90881.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 263 Score = 314 bits (805), Expect = 7e-84, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + K + +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTVAYDGTNYCGWQIQPNGITIEEILNKKLSRLTGEEIRVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P L ALN + + I I+ V +H R+ ++Y Y I+ + Sbjct: 61 VAVFDTETTIPPDRLAYALNQRM--PEDIVIVKSEEVPADWHPRYCDTVKTYEYLILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + LD + MR AA +L G HDF +F ++ +RTI D+ Sbjct: 119 IPDPTRRLTTYFVSYDLDLQKMRRAAGYLSGEHDFASFCNVRTNVEDTVRTIYELDILEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G +T ++ L+A+DR+ G APP GL Sbjct: 179 GEEITIRIRGNGFLYNMVRIIVGTLLRVGRGFYTPEQVKDILEAKDRQAAGVTAPPHGLR 238 Query: 241 FDSVEYS 247 +EY Sbjct: 239 LIGIEYP 245 >gi|254228474|ref|ZP_04921900.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|262393647|ref|YP_003285501.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|151939062|gb|EDN57894.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|262337241|gb|ACY51036.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] Length = 264 Score = 314 bits (805), Expect = 8e-84, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVTRKMVAWTMGANANM--PSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFTSFRAAHCQSRSPFRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + A +F+H +R+ GSL VG G+ + ++ L+A+DRK G A EGLY Sbjct: 179 NYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|331091743|ref|ZP_08340575.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330402642|gb|EGG82209.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 245 Score = 314 bits (804), Expect = 9e-84, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +I+ + KA+ +TGE +VV GA RTDSGVHA+ Sbjct: 1 MRRVKLTIAYDGTNYCGWQIQPNGITIEEIVNKALSKLTGEKIVVIGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + A+N L + I ++ V FH R+ ++Y Y I+ + Sbjct: 61 VAVFDTETTIPPERVAMAVNRIL--PEDIVVVKSEEVPLDFHPRYCDCEKTYEYHIVNTR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ ++ + + LD + MR A +L+G HDF +F +I S +RT+ ++ Sbjct: 119 IPIPTKRLTNYFVSYELDLDKMREGASYLIGEHDFASFCNIKTDVESTVRTVKELEILEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G + +++ L+A++RK G APP GL Sbjct: 179 GEEITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPVQVKEILEAKNRKAAGVTAPPHGLM 238 Query: 241 FDSVEYS 247 + Y+ Sbjct: 239 LMEIRYN 245 >gi|312793879|ref|YP_004026802.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181019|gb|ADQ41189.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kristjanssonii 177R1B] Length = 244 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L ISI + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTNSKIPTDKFPLALNSVL--PGDISIKDAVEVPLDFSARYSAKQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYHYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLVIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|18311353|ref|NP_563287.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13] gi|42559846|sp|Q8XHV5|TRUA2_CLOPE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|18146037|dbj|BAB82077.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13] Length = 244 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIINSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + Sbjct: 119 EPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|319406472|emb|CBI80113.1| tRNA pseudouridine synthase A [Bartonella sp. 1-1C] Length = 247 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 128/247 (51%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQKN +IQGSIE AIF +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQKNLRTIQGSIENAIFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + I++LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTNTVRDALNAHLQKQGENIAVLNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS +CQA SP+RT++ D+ Sbjct: 121 RSPPALNTKRVWWLPKPLDADAMHKAAQKLVGQHDFTTFRSAYCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGDEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHARNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLMKVDY 247 >gi|253579808|ref|ZP_04857076.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848807|gb|EES76769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 246 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG ++QG + + + GE + GA RTD+GVHA+ Sbjct: 1 MKRIGLVVAYDGTNYCGWQTQPNGITVQGVLNDTLSELLGEKIETIGASRTDAGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTNTRIPGEKISYALNQRL--PEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + LD + M+ A +L+G+HDF +F Q + IRT+ DV Sbjct: 119 FPVPTERLYTYFYHYKLDVDKMKAATSYLIGQHDFASFCGAKAQVKTTIRTVTGIDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++ L+A +R+ GP AP +GL Sbjct: 179 GDIVTIRVTGTGFLYNMVRIISGTLIEVGNGQYPPERVKTILEACNREMAGPTAPAQGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|296131870|ref|YP_003639117.1| tRNA pseudouridine synthase A [Thermincola sp. JR] gi|296030448|gb|ADG81216.1| tRNA pseudouridine synthase A [Thermincola potens JR] Length = 246 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M M IEY+G+ Y G+Q+Q N +IQ ++EKA+ +TGE + V GAGRTD+GVHAL Sbjct: 1 MRNIKMTIEYDGTSYHGFQKQADQNLPTIQEALEKALRKLTGEEISVTGAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F +ALN+ L + I + FHA+F A +++Y Y I Sbjct: 61 GQVINFYTESSIPTGNFVRALNSVL--PEDIVAKDAVEAPGDFHAQFWAKKKTYRYTIFN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P + + +P L+ +NMR AA LVG+HDF+ FR+ A S IRT+ +V Sbjct: 119 DTVPSVFYRRYSLFVPCKLNVDNMRKAASFLVGQHDFSAFRAAGSTARSSIRTMYRAEVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G LI + + A FL+ +R G+L +G GK +++ + + DR GP PP+G Sbjct: 179 QEGELIHVYLEANGFLYNMVRIITGTLLYIGQGKLRVEEMKDIIASGDRTLAGPTVPPQG 238 Query: 239 LYFDSVEY 246 L VEY Sbjct: 239 LCLMRVEY 246 >gi|160881752|ref|YP_001560720.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160430418|gb|ABX43981.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 245 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q N +I+G + + + + E +V+ GA RTD+GVHA Sbjct: 1 MKRVLLKVAYDGTNYCGWQVQPNAKTIEGVLNECLTKLLKEEIVIIGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD L ALNA+L + I I V+ FH R+ R++Y YRI Sbjct: 61 VAVFDTNSRIPAEKLSYALNAHL--PEDIVIQASMEVESDFHPRYCDTRKTYEYRIYNAT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + A + LD E MR AA +L+G HDF +F S + Q RTI + Sbjct: 119 FPLPTNRRYAHFVYYDLDLEAMRKAASYLIGEHDFVSFCSANTQVKDTTRTIYDIQIEKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI IR+ FL+ +R G+L VG +W + +AL +DR+ GP AP +GL Sbjct: 179 RELIVIRIKGNGFLYNMVRIIAGTLIQVGTHQWEPERVLEALTKKDRQAAGPTAPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|110799502|ref|YP_697060.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|168205200|ref|ZP_02631205.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|168211871|ref|ZP_02637496.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] gi|110674149|gb|ABG83136.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|170663322|gb|EDT16005.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|170710156|gb|EDT22338.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] Length = 244 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + Sbjct: 119 EPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|91223605|ref|ZP_01258870.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01] gi|269966027|ref|ZP_06180119.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 40B] gi|91191691|gb|EAS77955.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01] gi|269829423|gb|EEZ83665.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 40B] Length = 264 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVTRKMVAWTMGANANM--PSDIAVRWAKEVSDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQFLLGENDFTSFRAAHCQSRSPFRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + A +F+H +R+ GSL VG G+ + ++ L+A+DRK G A EGLY Sbjct: 179 NYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|330829261|ref|YP_004392213.1| tRNA pseudouridine synthase A [Aeromonas veronii B565] gi|328804397|gb|AEB49596.1| tRNA pseudouridine synthase A [Aeromonas veronii B565] Length = 269 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +E A+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQAELETALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTEANRAEGAWTLGLNSNL--PPDIAVRWVKQVDESFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ ++++ E M A Q L+G HDF+TFR++ CQ+++P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETINAELMHQAGQSLLGEHDFSTFRAVACQSNTPWRNVTHLCVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR GP A GLY Sbjct: 179 PYIVLDIRANAFLHHMVRNITGSLLLVGQGLKPVEWIAEVLAAKDRNLAGPTAKAGGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|323483257|ref|ZP_08088647.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323691247|ref|ZP_08105522.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] gi|323403355|gb|EGA95663.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323504587|gb|EGB20374.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] Length = 341 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KA+ + E V V GA RTDSGVHA Sbjct: 1 MKRIKLTVAYDGTAYCGWQIQPNGVTIEEVLNKALTGLLKEPVTVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN L D I + V FH R + ++Y Y+I+ R+ Sbjct: 61 VAVFDTESRIPGDKICFALNQRL--PDDIRVQASEEVPLSFHPRKANCTKTYEYKILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LE+ + +LD E M+ AA LVG HDF +F ++ QA +RTI DV+ Sbjct: 119 ISMPLERLYSHFCYFNLDVEKMKQAAAFLVGEHDFKSFCTVRTQAEETVRTIYSLDVSKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R G+L VG G + +E+ L+A+DR GP P GL Sbjct: 179 GDMITIRISGSGFLYNMVRIITGTLVKVGLGVYPPEHMEEILEARDRSAAGPTIPAVGLT 238 Query: 241 FDSVEYS 247 S+EY Sbjct: 239 LVSLEYE 245 >gi|59712303|ref|YP_205079.1| tRNA pseudouridine synthase A [Vibrio fischeri ES114] gi|197334265|ref|YP_002156517.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11] gi|62901138|sp|Q5E455|TRUA_VIBF1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690294|sp|B5FFN7|TRUA_VIBFM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|59480404|gb|AAW86191.1| pseudouridylate synthase I [Vibrio fischeri ES114] gi|197315755|gb|ACH65202.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11] Length = 262 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ++ +S+Q +EKA+ +V E + VH AGRTD+GVH QV Sbjct: 1 MRIALCIEYDGAEYYGWQRQRDVNSVQEELEKALTIVANEPIEVHCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD NA L I++ V++ FHARF+A R Y Y I + Sbjct: 61 VHFDTTSSRKLAAWMMGANANL--PKNIAVRWAKEVNEDFHARFTATARRYRYIIYNNRL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD M A Q+L+G +DFT+FR++HCQ+ SP R + H V G Sbjct: 119 RPAILGHGVSHYHDALDANLMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG GK ++ L+A+DRK G A EGLY Sbjct: 179 DFIVIDIKANAFVHHMVRNITGSLIEVGKGKQKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|312135434|ref|YP_004002772.1| tRNA pseudouridine synthase a [Caldicellulosiruptor owensensis OL] gi|311775485|gb|ADQ04972.1| tRNA pseudouridine synthase A [Caldicellulosiruptor owensensis OL] Length = 244 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L IS+ + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR I + + Sbjct: 119 SRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRHIYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|28898964|ref|NP_798569.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD 2210633] gi|260365288|ref|ZP_05777845.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030] gi|260878838|ref|ZP_05891193.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034] gi|260896240|ref|ZP_05904736.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466] gi|260899991|ref|ZP_05908386.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037] gi|31340461|sp|Q87MP1|TRUA_VIBPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28807183|dbj|BAC60453.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD 2210633] gi|308088841|gb|EFO38536.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466] gi|308094227|gb|EFO43922.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034] gi|308107376|gb|EFO44916.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037] gi|308115414|gb|EFO52954.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030] gi|328474496|gb|EGF45301.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 10329] Length = 264 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVNRKMVAWTMGANANM--PSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|212635890|ref|YP_002312415.1| tRNA pseudouridine synthase A [Shewanella piezotolerans WP3] gi|226708659|sp|B8CPW5|TRUA_SHEPW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212557374|gb|ACJ29828.1| tRNA pseudouridine synthase [Shewanella piezotolerans WP3] Length = 261 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ + S+QG +EKA+ V E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSRYYGWQRQLDVDSVQGQLEKALSKVANEPITVQCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N L D I++ + +VD++FHARFSA R Y Y I Q Sbjct: 61 VHFDTNAIRKETAWTLGVNVNL--PDDIAVRWVKVVDEEFHARFSATARRYRYMIYNHQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ VG HDFT+FR++ CQ+ +P R I +V G Sbjct: 119 RPGILRSGVSHYRGNIDEDKMHQAAQLFVGEHDFTSFRALQCQSKTPFREIHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VG+L +G G + L +DR + A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGTLLEIGKGNQPKEWVNTLLALKDRSKAAATAQPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|260776454|ref|ZP_05885349.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450] gi|260607677|gb|EEX33942.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450] Length = 264 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQK S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTHYYGWQRQKEVKSVQEKLERALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +NA L + I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTSASRKMVAWTMGVNANL--PNDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M A Q+L+G +DFT+FR++HCQ+ SP R I H DV G Sbjct: 119 RPGIMSSGVSHYHGELDAEKMHQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLDVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ +DRK G A GLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEWIKWLLEVKDRKLAGATAKAAGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|312877809|ref|ZP_07737759.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus 6A] gi|311795435|gb|EFR11814.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus 6A] Length = 244 Score = 312 bits (799), Expect = 4e-83, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L IS+ + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTNSKIPTDKFPLALNSVL--PGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLVIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|297545296|ref|YP_003677598.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843071|gb|ADH61587.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 240 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 137/242 (56%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++++Y+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL QVA+F Sbjct: 1 MIVVQYDGTNYHGWQYQKNAITVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L ALN+ L D I I V+ FHAR+SA R+ Y Y I+ R+ + Sbjct: 61 KTNTKIPAEKLPYALNSVL--PDDIVITQAKDVEDSFHARYSAKRKRYKYLILNRKFRMP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + + I Sbjct: 119 TMRNYCWHISYPLNVEKMKKAATYLIGTHDFSAFKASGSSKTSTIRTVYDLIIEKNEDFI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY + Sbjct: 179 NIEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYNILASKDRTKAGITAPPQGLYLIKI 238 Query: 245 EY 246 Y Sbjct: 239 IY 240 >gi|217977314|ref|YP_002361461.1| tRNA pseudouridine synthase A [Methylocella silvestris BL2] gi|254789643|sp|B8ENG8|TRUA_METSB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217502690|gb|ACK50099.1| tRNA pseudouridine synthase A [Methylocella silvestris BL2] Length = 248 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 138/247 (55%), Positives = 173/247 (70%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++IEY+G+ + GWQRQ NG S+Q +IE A+ TGE V +HGAGRTD+GVHA Q Sbjct: 1 MPRFKLLIEYDGAPFVGWQRQANGFSVQEAIETALGGFTGESVAIHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D R+W P +L A NA+L+ + I+IL VD +F ARFSA+RR YLY+II R+ Sbjct: 61 VAHVDFSRDWRPDVLRDAANAWLR-PNPIAILKAERVDDEFSARFSAVRRHYLYKIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L LE GR W I +SLD M AAQ L+G HDF+TFR CQA SP+RT++ FDV Sbjct: 120 ASLTLEAGRCWAIRRSLDAGAMHEAAQTLLGFHDFSTFRDSECQAESPLRTLERFDVLRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G IEI V ARSFLH+Q+RS VGSL VG GKW D+ +AL A+DR+ CG +APPEGLY Sbjct: 180 GENIEIHVAARSFLHSQVRSMVGSLAHVGSGKWRVEDMAEALAAKDRRRCGVVAPPEGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LMQVDYE 246 >gi|49474896|ref|YP_032937.1| tRNA pseudouridine synthase A [Bartonella henselae str. Houston-1] gi|51316603|sp|Q6G547|TRUA_BARHE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49237701|emb|CAF26890.1| tRNA pseudouridine synthase A [Bartonella henselae str. Houston-1] Length = 247 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 166/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQ ++E+A+F +G+ + + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAELRTIQSALEQALFHFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ I+IL++ V F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFEKNWRTHTVRDALNAHLQKQGDNIAILHVQNVPDSFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RSPPALNTKRVWWIPKPLNAQAMHEAAQKLVGKHDFTTFRSAHCQAKSPIRTLERLDVQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DR CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|182677494|ref|YP_001831640.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica ATCC 9039] gi|238691224|sp|B2IEW0|TRUA_BEII9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|182633377|gb|ACB94151.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica ATCC 9039] Length = 260 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 137/247 (55%), Positives = 175/247 (70%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQKNG S+Q IE A+ + G V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW P +L ALNA+++ ++++ V + F ARFSAIRR YLYRII R+ Sbjct: 61 VAHADLAREWRPDVLRDALNAHMR-PALVAVVAAEPVPETFDARFSAIRRHYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E GRAWL+ + LD M AAQ L GRHDF+TFR+ CQA+SPIRT++ DV + Sbjct: 120 APLTFEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASPIRTLERLDVQAV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LIEIR ARSFLH Q+RS VGSL++VG GKW++ DL AL+A DR+ CG +AP GLY Sbjct: 180 GDLIEIRASARSFLHHQVRSMVGSLEMVGSGKWSAGDLRAALEACDRRRCGMVAPAAGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LTGVDYP 246 >gi|110802389|ref|YP_699630.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] gi|110682890|gb|ABG86260.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] Length = 244 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + Sbjct: 119 EPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIEIE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|269962161|ref|ZP_06176515.1| tRNA pseudouridine synthase A [Vibrio harveyi 1DA3] gi|269833245|gb|EEZ87350.1| tRNA pseudouridine synthase A [Vibrio harveyi 1DA3] Length = 264 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQRDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANANM--PSDIAVRWAVEVNDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPFRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|262276338|ref|ZP_06054147.1| tRNA pseudouridine synthase A [Grimontia hollisae CIP 101886] gi|262220146|gb|EEY71462.1| tRNA pseudouridine synthase A [Grimontia hollisae CIP 101886] Length = 264 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS ++GWQRQ+ S+Q +EKA+ + + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGSQFYGWQRQREVPSVQEHLEKALSKIANQPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ +N +L DTI++ V +FHARFSA R Y Y I Sbjct: 61 VHFDIEGSRPLRAWTMGVNTHL--PDTIAVRWAKEVPDEFHARFSATARRYRYIIYNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M A Q+L+G +DFT+FR++ CQ+ SP R + H +V G Sbjct: 119 RPGILRHGVSHYHGELDETLMHEAGQYLLGENDFTSFRAVQCQSKSPWRNVHHINVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL +VG + ++ L+A+DR A EGLY Sbjct: 179 RFVIIDIKANAFVHHMVRNITGSLIVVGRKEQKPEWIKWLLEAKDRNLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 VEY Sbjct: 239 VEVEYP 244 >gi|291549528|emb|CBL25790.1| pseudouridylate synthase I [Ruminococcus torques L2-14] Length = 256 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q +I+G + +AI +T E ++V GA RTD+GVHA Sbjct: 1 MRRIRLRVAYDGTAYCGWQVQPEVPTIEGELNQAISRLTKEEIIVIGASRTDAGVHAKGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I ++ V+ +H R ++Y Y+I+ + Sbjct: 61 VAVFDTESTIPADRFAYALNPLL--PEDIVVVASDEVEADWHPRHCDTEKTYEYKILNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + L+ E MR AA++L G HDF +F ++H Q +RTI +V Sbjct: 119 FPDPMRRRDTYHVSFDLNLEKMREAAEYLKGEHDFKSFCNVHTQVEDTVRTIYDLEVEKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI IRV FL+ +R G+L VG G + L+A+DR+ G PP+GL Sbjct: 179 EELITIRVRGNGFLYNMVRILAGTLIGVGRGAIAPEQIPAILEAKDRQAAGMTVPPQGLT 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LVKIDY 244 >gi|209886648|ref|YP_002290505.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5] gi|229557998|sp|B6JJP6|TRUA_OLICO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209874844|gb|ACI94640.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5] Length = 245 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 131/246 (53%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQ Q NG S+QG++E A+ + G V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLLIEYDGTPFCGWQYQDNGPSVQGALEDAVAALAGTHVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+L+ I +L+ IV + F +RFSA++R Y+YRI R+ Sbjct: 61 VAHIDLEKSYRTDQVRDALNAHLR-PHPIGVLSAEIVPETFESRFSAVKRHYIYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ RAW I ++LD M AAQ LVGRHDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDLHRAWRIARTLDVAAMHEAAQVLVGRHDFTTFRDTECQAKSPEKTLDQLDVTRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+WT D+ AL A+DR CGP+APPEGLY Sbjct: 180 GDAVSIVTSARSFLHSQVRSMVGSLVWVGHGRWTIADMRNALAARDRTACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|254720140|ref|ZP_05181951.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] gi|265985146|ref|ZP_06097881.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] gi|264663738|gb|EEZ33999.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] Length = 251 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 131/247 (53%), Positives = 171/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++QG+IE+A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEELTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL ++W + A+NA+L + ISILN+ F ARFSA R YLYRI R Sbjct: 61 VAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLVGVDY 247 >gi|307943162|ref|ZP_07658507.1| tRNA pseudouridine synthase A [Roseibium sp. TrichSKD4] gi|307773958|gb|EFO33174.1| tRNA pseudouridine synthase A [Roseibium sp. TrichSKD4] Length = 271 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 127/246 (51%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ NG S QG IE+AI +GE V + GAGRTD+GVHAL Q Sbjct: 1 MPRYKLTVEYDGRPFCGWQRQSNGPSAQGVIERAIKAFSGEDVTIGGAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +W + ALN + + D + IL F ARFSAIRRSY YRI R Sbjct: 61 VAHADLSEDWPEKTVMGALNFHCQ-PDPVVILACEKKHDGFDARFSAIRRSYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL E G AW + LD + M AAQ VG HDFTTFR CQA SP++T+++F V Sbjct: 120 PPLTHELGLAWHVKHELDADAMNEAAQEFVGHHDFTTFRHSRCQAKSPVKTLENFTVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I +RSFLH Q+RS VG+L+LVG+G+WT++D+ +AL A+DRK CGP+AP +GLY Sbjct: 180 GEIILAECSSRSFLHNQVRSMVGTLRLVGEGRWTASDVGEALAARDRKACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|17988610|ref|NP_541243.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|62317861|ref|YP_223714.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. 9-941] gi|83269839|ref|YP_419130.1| tRNA pseudouridine synthase A [Brucella melitensis biovar Abortus 2308] gi|148558621|ref|YP_001257944.1| tRNA pseudouridine synthase A [Brucella ovis ATCC 25840] gi|161621080|ref|YP_001594966.1| tRNA pseudouridine synthase A [Brucella canis ATCC 23365] gi|163845146|ref|YP_001622801.1| tRNA pseudouridine synthase A [Brucella suis ATCC 23445] gi|221090245|ref|YP_002519393.1| tRNA pseudouridine synthase A [Brucella suis 1330] gi|225629482|ref|ZP_03787515.1| tRNA pseudouridine synthase A [Brucella ceti str. Cudo] gi|225686787|ref|YP_002734759.1| tRNA pseudouridine synthase A [Brucella melitensis ATCC 23457] gi|237817402|ref|ZP_04596394.1| tRNA pseudouridine synthase A [Brucella abortus str. 2308 A] gi|254690653|ref|ZP_05153907.1| tRNA pseudouridine synthase A [Brucella abortus bv. 6 str. 870] gi|254696042|ref|ZP_05157870.1| tRNA pseudouridine synthase A [Brucella abortus bv. 3 str. Tulya] gi|254699151|ref|ZP_05160979.1| tRNA pseudouridine synthase A [Brucella abortus bv. 2 str. 86/8/59] gi|254700227|ref|ZP_05162055.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|254703348|ref|ZP_05165176.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|254705511|ref|ZP_05167339.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|254710742|ref|ZP_05172553.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|254712788|ref|ZP_05174599.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|254715857|ref|ZP_05177668.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|254732595|ref|ZP_05191173.1| tRNA pseudouridine synthase A [Brucella abortus bv. 4 str. 292] gi|256015792|ref|YP_003105801.1| tRNA pseudouridine synthase A [Brucella microti CCM 4915] gi|256029125|ref|ZP_05442739.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|256043901|ref|ZP_05446820.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|256058808|ref|ZP_05449024.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|256111035|ref|ZP_05452097.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|256157317|ref|ZP_05455235.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|256253705|ref|ZP_05459241.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|256255835|ref|ZP_05461371.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|256262079|ref|ZP_05464611.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 2 str. 63/9] gi|260167783|ref|ZP_05754594.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|260545096|ref|ZP_05820917.1| tRNA pseudouridine synthase A [Brucella abortus NCTC 8038] gi|260565077|ref|ZP_05835562.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|260567722|ref|ZP_05838191.1| tRNA pseudouridine synthase A [Brucella suis bv. 4 str. 40] gi|260756224|ref|ZP_05868572.1| pseudouridylate synthase [Brucella abortus bv. 6 str. 870] gi|260760407|ref|ZP_05872755.1| pseudouridylate synthase [Brucella abortus bv. 4 str. 292] gi|260763647|ref|ZP_05875979.1| pseudouridylate synthase [Brucella abortus bv. 2 str. 86/8/59] gi|260882048|ref|ZP_05893662.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|261216474|ref|ZP_05930755.1| pseudouridylate synthase [Brucella abortus bv. 3 str. Tulya] gi|261217618|ref|ZP_05931899.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|261220842|ref|ZP_05935123.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|261312915|ref|ZP_05952112.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|261318310|ref|ZP_05957507.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|261320495|ref|ZP_05959692.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|261322745|ref|ZP_05961942.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|261750722|ref|ZP_05994431.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|261753978|ref|ZP_05997687.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|261757220|ref|ZP_06000929.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|265986108|ref|ZP_06098665.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|265990323|ref|ZP_06102880.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|265992570|ref|ZP_06105127.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|265995802|ref|ZP_06108359.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|294853986|ref|ZP_06794658.1| tRNA pseudouridine synthase A [Brucella sp. NVSL 07-0026] gi|297249204|ref|ZP_06932905.1| tRNA pseudouridine synthase A [Brucella abortus bv. 5 str. B3196] gi|30913400|sp|Q8YDB2|TRUA_BRUME RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901254|sp|Q60CV4|TRUA_BRUSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81309258|sp|Q576T1|TRUA_BRUAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123754475|sp|Q2YJQ4|TRUA_BRUA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228682|sp|A5VVT9|TRUA_BRUO2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030128|sp|A9MCV8|TRUA_BRUC2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030129|sp|A9WW43|TRUA_BRUSI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789607|sp|C0RMH2|TRUA_BRUMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17984412|gb|AAL53507.1| tRNA pseudouridine synthase a [Brucella melitensis bv. 1 str. 16M] gi|54112373|gb|AAV28867.1| tRNA pseudouridine synthase A [Brucella suis 1330] gi|62198054|gb|AAX76353.1| TruA, tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. 9-941] gi|82940113|emb|CAJ13161.1| tRNA pseudouridine synthase [Brucella melitensis biovar Abortus 2308] gi|148369906|gb|ABQ62778.1| tRNA pseudouridine synthase A [Brucella ovis ATCC 25840] gi|161337891|gb|ABX64195.1| tRNA pseudouridine synthase A [Brucella canis ATCC 23365] gi|163675869|gb|ABY39979.1| tRNA pseudouridine synthase A [Brucella suis ATCC 23445] gi|225615978|gb|EEH13027.1| tRNA pseudouridine synthase A [Brucella ceti str. Cudo] gi|225642892|gb|ACO02805.1| tRNA pseudouridine synthase A [Brucella melitensis ATCC 23457] gi|237788215|gb|EEP62431.1| tRNA pseudouridine synthase A [Brucella abortus str. 2308 A] gi|255998452|gb|ACU50139.1| tRNA pseudouridine synthase A [Brucella microti CCM 4915] gi|260098367|gb|EEW82241.1| tRNA pseudouridine synthase A [Brucella abortus NCTC 8038] gi|260152720|gb|EEW87813.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|260154387|gb|EEW89468.1| tRNA pseudouridine synthase A [Brucella suis bv. 4 str. 40] gi|260670725|gb|EEX57665.1| pseudouridylate synthase [Brucella abortus bv. 4 str. 292] gi|260674068|gb|EEX60889.1| pseudouridylate synthase [Brucella abortus bv. 2 str. 86/8/59] gi|260676332|gb|EEX63153.1| pseudouridylate synthase [Brucella abortus bv. 6 str. 870] gi|260871576|gb|EEX78645.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|260918081|gb|EEX84942.1| pseudouridylate synthase [Brucella abortus bv. 3 str. Tulya] gi|260919426|gb|EEX86079.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|260922707|gb|EEX89275.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|261293185|gb|EEX96681.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|261297533|gb|EEY01030.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|261298725|gb|EEY02222.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|261301941|gb|EEY05438.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|261737204|gb|EEY25200.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|261740475|gb|EEY28401.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|261743731|gb|EEY31657.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|262550099|gb|EEZ06260.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|262763440|gb|EEZ09472.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|263000992|gb|EEZ13682.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|263091768|gb|EEZ16099.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 2 str. 63/9] gi|264658305|gb|EEZ28566.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|294819641|gb|EFG36641.1| tRNA pseudouridine synthase A [Brucella sp. NVSL 07-0026] gi|297173073|gb|EFH32437.1| tRNA pseudouridine synthase A [Brucella abortus bv. 5 str. B3196] gi|326411195|gb|ADZ68259.1| tRNA pseudouridine synthase A [Brucella melitensis M28] gi|326554486|gb|ADZ89125.1| tRNA pseudouridine synthase A [Brucella melitensis M5-90] Length = 251 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 131/247 (53%), Positives = 172/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++QG+IE+A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL ++W + A+NA+L + ISILN+ F ARFSA R YLYRI R Sbjct: 61 VAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLVGVDY 247 >gi|71280165|ref|YP_270466.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H] gi|123760979|sp|Q47XK4|TRUA_COLP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71145905|gb|AAZ26378.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H] Length = 259 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 142/246 (57%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + IEY+G Y GWQRQ N ++Q +EKA+ + E + V AGRTD+GV+A QV Sbjct: 1 MRYALGIEYDGKNYCGWQRQNNVITVQEKLEKALSKIADEKIEVVCAGRTDTGVNATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ +N +L +++ + VD FHARFSA R+Y Y I + Sbjct: 61 IHFDTEKKRKDTAWTLGVNTHL--PSDVAVAWVKKVDDDFHARFSATARNYRYIIYNKPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD M+ A +L+G+HDFT+FR++HCQ+ S +RTI H V G Sbjct: 119 RSAILSHGISHCHFALDENLMQQGADYLLGKHDFTSFRTVHCQSHSAVRTIKHCRVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ VGSL VG + T +++ L A++R G APPEGLYF Sbjct: 179 DYLVVDIKANAFLHHMVRNVVGSLMRVGQSQETPHWMKEVLLAKNRCVAGVTAPPEGLYF 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 255 Score = 311 bits (797), Expect = 7e-83, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ Y GWQ Q+N SIQ I KA+ VTGE + HG+GRTD+GVHA Q Sbjct: 1 MRNIMIEIEYDGTNYSGWQIQQNAPSIQEEIAKALKKVTGEEITTHGSGRTDAGVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F L + + ALN L I+IL + + FHAR+SAI + Y Y I+ Sbjct: 61 VASFQLHSKIPAERISFALNGKL--PRDITILEAKEMPEDFHARYSAIGKRYGYCIMNNT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + + +P LD + M+ A++ L+G HDF F + Q S +R ID + ++ Sbjct: 119 HGSALLRNYCYHVPYKLDLQKMKQASETLLGTHDFKGFMASGSQVKSTVRRIDEINFDTQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + FL+ +R VGSL +G GK L+ L+ Q+R+ AP +GLY Sbjct: 179 GSQIWITMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVKTAPAQGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LQKVFYP 245 >gi|168216665|ref|ZP_02642290.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] gi|182381201|gb|EDT78680.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] Length = 244 Score = 311 bits (797), Expect = 7e-83, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + Sbjct: 119 EPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKSGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|295691224|ref|YP_003594917.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756] gi|295433127|gb|ADG12299.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756] Length = 247 Score = 310 bits (796), Expect = 8e-83, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G Y G+Q Q S+QG+IE A+ G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGRPYAGFQAQATLPSVQGAIEAAVKAFCGQDVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L + +SIL+ + + +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLEKDWPAQTVFNALNAHLT-HEAVSILSAEVAEGDWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+KGR W + K LD E M AAQHLVG HDFTTFR +HCQ+ SP++T+D V Sbjct: 120 APPALDKGRVWHMKKDLDAEAMHAAAQHLVGLHDFTTFRDMHCQSKSPVKTLDVARVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + ARSFLH Q+RS G+L VG G+WT D++ AL+A+DR+ECGP+AP +GLY Sbjct: 180 GEEIHLDFEARSFLHRQVRSMTGTLVEVGAGRWTPDDVKAALEAKDRRECGPVAPADGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LVGVGY 245 >gi|119775285|ref|YP_928025.1| tRNA pseudouridine synthase A [Shewanella amazonensis SB2B] gi|166229832|sp|A1S7J9|TRUA_SHEAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119767785|gb|ABM00356.1| pseudouridylate synthase [Shewanella amazonensis SB2B] Length = 261 Score = 310 bits (796), Expect = 8e-83, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS ++GWQRQ +S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSKFYGWQRQAEVNSVQAELERALSIVANEPIEVQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N +L D I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNAVRKEGAWTLGVNVHL--PDDIAVRWAMPVNDDFHARFSATARRYRYVIFNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D E M AAQ L+G DFT+FR+I CQ+++P R + V+ G Sbjct: 119 RPGILRKGVSHYHGDIDVERMHDAAQALIGERDFTSFRAIGCQSNTPFRNVHKVSVSRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL +G G + L+A+DR + A P GLY Sbjct: 179 MYIVVDIQANAFLHHMVRNIVGSLLEIGLGNQPLDWMATLLEAKDRSQAAATAKPHGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|85707833|ref|ZP_01038899.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1] gi|85689367|gb|EAQ29370.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1] Length = 247 Score = 310 bits (796), Expect = 8e-83, Method: Composition-based stats. Identities = 127/247 (51%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IE++G+ + G QRQK+G S+Q SIE+A+ +TGE +H AGRTD+GVHAL Sbjct: 1 MTRFALTIEFDGTPFQGLQRQKHGPSVQQSIEEALHRITGEDATLHSAGRTDTGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +H DL ++ P L +ALNA+L+ D I+IL +VD+ +HARFS + R Y+Y+I R+ Sbjct: 61 RSHVDLEKDIDPFRLSEALNAHLR-PDPIAILACEVVDEDWHARFSCVGRRYVYKIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L K RAW + LD E M AAQ LVGRHDFTTFRS+HCQA P++T+D +V Sbjct: 120 APLTLAKNRAWQVAHDLDHEAMHRAAQALVGRHDFTTFRSVHCQAKDPVKTLDQLNVERV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VG LKLVG G W + +AL A+DR + G APP+GLY Sbjct: 180 GDEIHIHAAARSFLHHQVRSMVGCLKLVGAGSWREEQVAEALAAKDRSKLGLNAPPQGLY 239 Query: 241 FDSVEYS 247 F Y Sbjct: 240 FVEATYP 246 >gi|154483152|ref|ZP_02025600.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC 27560] gi|149735960|gb|EDM51846.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC 27560] Length = 246 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ Y GWQ Q NG +++ + KA+ + E + V GA RTDSGVHA+ Sbjct: 1 MKRVRLIIAYDGTNYCGWQVQINGITVEEVLNKALKDLLNEEIAVIGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I V +H R+ ++Y Y+I+ R+ Sbjct: 61 VAVFDTETRIPAEKISFALNQRL--PNDIRIQKSDEVPLDWHPRYRDSTKTYEYKILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L++ + LD + M+ AA+++VG HDF +F S Q S +RT+ VN Sbjct: 119 FPDPLQRFYTHFMYMPLDEQKMKEAAEYIVGEHDFASFCSAGSQVDSTVRTVYSLSVNKR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I IR+ FL+ +R VG+L VG G + +++ ++A+DR GP AP GL Sbjct: 179 DDVISIRITGNGFLYNMVRIIVGTLIKVGLGVYPPEHVKEIIEAKDRYVAGPKAPACGLT 238 Query: 241 FDSVEYS 247 +EYS Sbjct: 239 LVGIEYS 245 >gi|302871559|ref|YP_003840195.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis OB47] gi|302574418|gb|ADL42209.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis OB47] Length = 244 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L IS+ + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISVKDAIEVSLDFSARYSAKQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S+ ++ + +R I + + Sbjct: 119 SRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSVDSESKTTVRRIYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR G PP GLY Sbjct: 179 NECIAIYLTANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVAY 244 >gi|238916297|ref|YP_002929814.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238871657|gb|ACR71367.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 253 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q +I+ ++KAI +TGE V V GA RTD+GVHA Sbjct: 1 MRRIKLIVAYDGTEYSGWQIQPEAPTIEMCLDKAIRELTGENVHVTGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN +L D+I I + V FH R R++Y YRI+ Sbjct: 61 VAVFDTESTIPGDRFTFALNRFL--PDSIVIQDSWEVSGDFHPRHCNTRKTYEYRILNTV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL ++ W + S+D E M+ AA ++VG HDF +F + QA S +RTI +V Sbjct: 119 VPLPQKRNFTWHVTGSIDIEKMKEAAAYIVGEHDFKSFCCVRTQAESTVRTIYSLEVLQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R G+L VG G++ +++ L+A+DR G APP+GL Sbjct: 179 GSEIIIRIKGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQTAPPQGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVGIEY 244 >gi|260461124|ref|ZP_05809373.1| tRNA pseudouridine synthase A [Mesorhizobium opportunistum WSM2075] gi|259033158|gb|EEW34420.1| tRNA pseudouridine synthase A [Mesorhizobium opportunistum WSM2075] Length = 249 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 131/248 (52%), Positives = 173/248 (69%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE V + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEEAIEKFCGEAVRLRAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DLV+ W + A+NA+L+ + + IL +V F ARFSA R YLYRI+ R Sbjct: 61 VAHVDLVKAWPGDKVRDAVNAHLQAAGARVVILKAGVVPDDFDARFSATGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP ALEKG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SP+RT++ DV+ Sbjct: 121 RAPSALEKGKVWWVPKRLDAGAMHEAAKILLGRHDFTTFRSTQCQANSPVRTLEQLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG W++ D + AL+A+DR CG +APP+GL Sbjct: 181 QGDMIEVRASARSFLHNQVRSMVGSLKRVGDGSWSANDFKAALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEYS 247 + V+YS Sbjct: 241 FLIGVDYS 248 >gi|149910526|ref|ZP_01899165.1| tRNA pseudouridine synthase A [Moritella sp. PE36] gi|149806369|gb|EDM66342.1| tRNA pseudouridine synthase A [Moritella sp. PE36] Length = 263 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 104/246 (42%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQK+ S+Q +E A+ V V VH AGRTDSGVH QV Sbjct: 1 MRIALGIEYDGSKYYGWQRQKDVISVQEKLEDALSRVANHPVRVHCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +NA L D I++ VD++FHARFSA R Y Y I Q Sbjct: 61 VHFDTDAVRQDVAWTLGVNANL--PDDIAVRWALEVDEEFHARFSATARRYRYIIYNSQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +D E M AAQ LVG HDFT+FR+ HCQA SPI+T+ H +V Sbjct: 119 RPAILSAGVSHYYGDIDVELMHEAAQQLVGEHDFTSFRAKHCQAKSPIKTMHHINVIRQN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V A +FLH +R+ GSL VG G + + + L +DR + EGLY Sbjct: 179 SYIIIDVKANAFLHHMVRNLAGSLMEVGKGNKPVSWIAELLAGKDRSVAAATSKAEGLYM 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|261252353|ref|ZP_05944926.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891] gi|260935744|gb|EEX91733.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891] Length = 264 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ+ S+Q +E+A+ +V + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQREVKSVQEKLERALSVVANQPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L D I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTTATRKMVAWTMGANANL--PDDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSSGVSHYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ + + L +DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQQPEWIAELLAVKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|296159699|ref|ZP_06842522.1| tRNA pseudouridine synthase A [Burkholderia sp. Ch1-1] gi|295890143|gb|EFG69938.1| tRNA pseudouridine synthase A [Burkholderia sp. Ch1-1] Length = 270 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVQTIVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTEIDRADVSWVRGTNSFL--PKTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + +LD + M+ AA HL+G HDF+ FRS CQ+ +PI+ + DV Sbjct: 119 VRSPMLATRAGWVHTALDVDAMQAAAAHLIGEHDFSAFRSSQCQSKTPIKHLHQIDVRQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L ++DR P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNLMGCLVYIGRGRRPVEWMAEVLASRDRDFAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|332798239|ref|YP_004459738.1| tRNA pseudouridine synthase A [Tepidanaerobacter sp. Re1] gi|332695974|gb|AEE90431.1| tRNA pseudouridine synthase A [Tepidanaerobacter sp. Re1] Length = 243 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EY G+ Y GWQRQKN SIQ +E AI +TGE V V G+GRTD+GVHAL QV Sbjct: 1 MNVKILLEYEGTAYSGWQRQKNAISIQEVLENAIKSITGEAVNVIGSGRTDAGVHALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + L A+N+ L + I + + IV + FHARF A + Y Y I + Sbjct: 61 ANFKTQTKIPIEKLPYAINSKL--PEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L K ++ P+ L+ M+ AA L+G HDF +F + + S +R I+ +V G Sbjct: 119 PSPLLKRYSYFYPRPLNVRAMKKAADMLIGTHDFASFMASNSPVKSTVRCIERLEVFQNG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++++ + A FL+ +R G+L VG K + D+ ++++DR G PP+GL Sbjct: 179 DIVKFEIEANGFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKTLPPQGLCL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 IKVIY 243 >gi|109897925|ref|YP_661180.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c] gi|123064742|sp|Q15VG2|TRUA_PSEA6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109700206|gb|ABG40126.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c] Length = 263 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ + GWQRQ S+Q +E+A+ + E + V AGRTD+GVHA QV Sbjct: 1 MRIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N YL DTIS+ + V + FHARFSA R Y Y I Sbjct: 61 VHFETTSQRPDRAWTLGINTYL--PDTISVRWVKAVPEDFHARFSATARRYRYIIYNNTL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + I LD E M AAQ LVG+HDF++FR+++CQA + RT+ H V G Sbjct: 119 RSGILANGVTHIYGDLDHELMHEAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V A +FLH +R+ G+L +G + +++ L+ +DR + G A P GLY Sbjct: 179 DYIVIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VHVTYP 244 >gi|169347102|ref|ZP_02866044.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|169296785|gb|EDS78914.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] Length = 244 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLIIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + Sbjct: 119 EPPALERNCVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|319407940|emb|CBI81594.1| tRNA pseudouridine synthase A [Bartonella schoenbuchensis R1] Length = 247 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ + +EY+GS Y GWQRQ +IQG+IE+AIF +GE + + AGRTD+GVHA+ Q Sbjct: 1 MVRFKLTLEYDGSNYAGWQRQAGLRTIQGAIEQAIFNFSGEKLTIVTAGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + I++LN+ V FHARF A +R YL++I+ R Sbjct: 61 VAHVDFTKNWHANTVHNALNAHLQQQGENIAVLNVQNVPDSFHARFCATKRYYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RSPPALNVKRVWWLPKHLNADAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDVYR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DR CG +APP GL Sbjct: 181 KGEEIFLYAQARSFLHHQIRSFAGSLVKVGTGQWTAQDLEAALNAKDRARCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y ++Y Sbjct: 241 YLMKIDY 247 >gi|153834426|ref|ZP_01987093.1| tRNA pseudouridine synthase A [Vibrio harveyi HY01] gi|156975370|ref|YP_001446277.1| tRNA pseudouridine synthase A [Vibrio harveyi ATCC BAA-1116] gi|166229849|sp|A7MS76|TRUA_VIBHB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148869197|gb|EDL68225.1| tRNA pseudouridine synthase A [Vibrio harveyi HY01] gi|156526964|gb|ABU72050.1| hypothetical protein VIBHAR_03101 [Vibrio harveyi ATCC BAA-1116] Length = 264 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANANM--PSDIAVRWAVEVNDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNMMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKSLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|289579109|ref|YP_003477736.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9] gi|289528822|gb|ADD03174.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9] Length = 240 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 137/242 (56%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++++Y+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL QVA+F Sbjct: 1 MIVVQYDGTNYHGWQLQKNAITVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L ALN+ L D I I V+ FHAR+SA R+ Y Y I+ R+ + Sbjct: 61 KTNTKMPAEKLPYALNSVL--PDDIVITQAKDVEDSFHARYSAKRKRYKYIILNRKFRMP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + + I Sbjct: 119 TMRNYCWHISYPLNVEKMKKAATYLIGTHDFSAFKASGSSKTSTIRTVYDLIIEKNEDFI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY + Sbjct: 179 NIEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYHILASKDRTKAGITAPPQGLYLIKI 238 Query: 245 EY 246 Y Sbjct: 239 IY 240 >gi|187776609|ref|ZP_02993082.1| hypothetical protein CLOSPO_00123 [Clostridium sporogenes ATCC 15579] gi|187775268|gb|EDU39070.1| hypothetical protein CLOSPO_00123 [Clostridium sporogenes ATCC 15579] Length = 246 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 136/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EK I +T E V + GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITKEKVEITGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F P L + +N L I +L+ V +FH+RF + ++Y Y I+ Sbjct: 61 GYMCNFFTNSRIPPENLQRVINNNL--PPDIVVLSSEEVSSEFHSRFCSKGKTYEYTILN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P+A+ + + LD + M+IA+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 KSEPIAIGRNYVFHFKYKLDIDKMKIASKYFIGTHDFSAFQTKGSSVKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+LI+ + FL+ +R VG+L +G K +E ++++DR++ G P G Sbjct: 179 KSGDLIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIEYVIKSKDRRKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|158319577|ref|YP_001512084.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] gi|158139776|gb|ABW18088.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] Length = 248 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 131/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+GS Y GWQ Q N +IQ I KA+ + G+ VV+HG+GRTD+GVHA Q Sbjct: 1 MRNIMIEIEYDGSNYSGWQVQPNAITIQEEIMKALKKLEGKDVVIHGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + R L A+N+ L I+I++ V FHAR+SAI + Y+Y I + Sbjct: 61 VATFLMERNIPVERLPLAMNSNL--PKDITIIDAKEVPMDFHARYSAIGKRYIYHIYESR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + ++ I LD M A++ L+G HDF F S +RTI + S Sbjct: 119 YRSAILRNYSYHINYKLDRSKMMEASKLLIGTHDFRGFMSNGSSVEDTVRTIKSLEFKSD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + FL+ +R G+L +G G +EK L+ +DR G APP+GL+ Sbjct: 179 GENIYMIIEGDGFLYNMVRIITGTLVQIGAGNKPLEQIEKILKTKDRSLAGHTAPPQGLF 238 Query: 241 FDSVEYS 247 D V Y Sbjct: 239 LDKVFYP 245 >gi|154250719|ref|YP_001411543.1| tRNA pseudouridine synthase A [Parvibaculum lavamentivorans DS-1] gi|171769555|sp|A7HPQ3|TRUA_PARL1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154154669|gb|ABS61886.1| tRNA pseudouridine synthase A [Parvibaculum lavamentivorans DS-1] Length = 246 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 172/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+GS + GWQ Q NG S+Q +E+ I G+ + + GAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGSPFVGWQAQTNGRSVQQVLEEGIKGFCGQELKIFGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D P L A+NA+++ ++I+ V F ARFSA++R Y+YRI+ R+ Sbjct: 61 VAHVDFETPVAPDTLRDAVNAHMR-PHPVAIVEAEEVPDSFEARFSAVKRHYMYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L++G+AWL+ K+LD + M AAQ LVG HDFTTFRS+ CQA SP++T+D V+ + Sbjct: 120 APLTLDRGQAWLVHKTLDADAMHDAAQALVGNHDFTTFRSVQCQAKSPVKTVDEISVSRY 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + IEI ARSFLH Q+RSFVG+LK+VGDG WT +EKAL A+DR CGP+APP+GLY Sbjct: 180 ADEIEIVCRARSFLHNQVRSFVGTLKMVGDGSWTRRKVEKALAAKDRAACGPVAPPDGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LLQVDYE 246 >gi|13474062|ref|NP_105630.1| tRNA pseudouridine synthase A [Mesorhizobium loti MAFF303099] gi|30913408|sp|Q98D55|TRUA_RHILO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14024814|dbj|BAB51416.1| tRNA-pseudouridine synthase [Mesorhizobium loti MAFF303099] Length = 248 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 131/248 (52%), Positives = 173/248 (69%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE V + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAVRLRAAGRTDAGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL + W + A+NA+L+ + ++IL +IV F ARFSA R YLYRI+ R Sbjct: 61 VAHVDLAKPWPGDKVRDAVNAHLQAAGAHVAILKAAIVPDDFDARFSATGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP ALEKG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SP+RT++ DV+ Sbjct: 121 RAPAALEKGKVWWVPKRLDAGAMHEAAKLLLGRHDFTTFRSTQCQANSPVRTLERLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG WT +L+ AL+A+DR CG +APP+GL Sbjct: 181 AGDMIEVRASARSFLHNQVRSMVGSLKRVGDGGWTEAELKAALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEYS 247 + V+Y Sbjct: 241 FLIGVDYP 248 >gi|260769069|ref|ZP_05878003.1| tRNA pseudouridine synthase A [Vibrio furnissii CIP 102972] gi|260617099|gb|EEX42284.1| tRNA pseudouridine synthase A [Vibrio furnissii CIP 102972] gi|315180810|gb|ADT87724.1| tRNA pseudouridine synthase A [Vibrio furnissii NCTC 11218] Length = 264 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ +S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTQYYGWQRQREVNSVQEELEKALSVIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTATRKMIAWTMGANANL--PKNIAVRWAKEVPDEFHARFSATARRYRYVIYNHMF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD M A Q L+G +DFT+FR++HCQ+ SP R I H +V Sbjct: 119 RPGILATGVSHYHGELDVARMHQAGQFLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRHE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQEPEWIQWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|323499722|ref|ZP_08104688.1| tRNA pseudouridine synthase A [Vibrio sinaloensis DSM 21326] gi|323315224|gb|EGA68269.1| tRNA pseudouridine synthase A [Vibrio sinaloensis DSM 21326] Length = 264 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ+ S+Q ++EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQQEVKSVQEALEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L +++ V + FHARFSA R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANL--PSDVAVRWAKEVPEDFHARFSATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSSGVSHYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ +E LQA+DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEWIEWLLQAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|294497016|ref|YP_003560716.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551] gi|295702381|ref|YP_003595456.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319] gi|294346953|gb|ADE67282.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551] gi|294800040|gb|ADF37106.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319] Length = 246 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I+ Y+G+ + G+Q Q N ++Q IE + + + V ++ +GRTD+ VHA Q Sbjct: 1 MKRLKCIVAYDGTHFSGYQVQPNKRTVQLEIEAVLEKMHNKKVPIYASGRTDTNVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD KALN+ L D I + N+ VD FHAR+ + Y Y I+ + Sbjct: 61 VIHFDTNLNIPCDKWKKALNSML--PDDIVMKNVCEVDAHFHARYDVTSKEYRYHILRGE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ P LD M+ A +L+G HDFT+F S + IRTI D+ Sbjct: 119 DRNPFTRSYAYHYPYPLDYSKMKKAITYLLGTHDFTSFCSARTEVEDKIRTIYKIDMYEE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + R V FL+ +R VG+L VG G+ ++ L+++ R G AP +GLY Sbjct: 179 NSQLVFRFVGSGFLYNMVRILVGTLLEVGQGRIEPDAIKDILESKSRPRAGKTAPSQGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LWRVFYD 245 >gi|170727324|ref|YP_001761350.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908] gi|238688683|sp|B1KKN8|TRUA_SHEWM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169812671|gb|ACA87255.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908] Length = 261 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ S+Q +E+A+ V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSKYFGWQRQVEVDSVQAQLERALSKVANEPISVHCAGRTDTGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N L D I++ +VD+ FHARFSA R Y Y I Q Sbjct: 61 VHFDTDAIRKESAWTLGVNVSL--PDDIAVRWAKVVDEDFHARFSATARRYRYMIYNYQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M AAQH VG HDFT+FR++HCQ+ SP R + +V G Sbjct: 119 RPGILRSGVSHYRTHLDENKMHEAAQHFVGEHDFTSFRALHCQSKSPNRNVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL +G G + + + L +DR + P A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLIEIGLGHQSHEWIPELLALKDRSKAAPTAKPNGLYM 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|187921475|ref|YP_001890507.1| tRNA pseudouridine synthase A [Burkholderia phytofirmans PsJN] gi|238691591|sp|B2T9N4|TRUA_BURPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187719913|gb|ACD21136.1| tRNA pseudouridine synthase A [Burkholderia phytofirmans PsJN] Length = 270 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q + +++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHRNTVQDELERALREFARTPVQTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRADVSWVRGTNSFL--PKTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + SLD + M+ AA HL+G HDF+ FRS CQA +P++ + DV Sbjct: 119 VRSPMLATRAGWVHTSLDVDAMQKAAAHLLGEHDFSAFRSSQCQAKTPVKHLYQIDVKQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L ++DR P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNLMGCLVYIGGGRRPVEWMAEVLASRDRDFAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|312127288|ref|YP_003992162.1| tRNA pseudouridine synthase a [Caldicellulosiruptor hydrothermalis 108] gi|311777307|gb|ADQ06793.1| tRNA pseudouridine synthase A [Caldicellulosiruptor hydrothermalis 108] Length = 244 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTEYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L ISI + V F AR+SA +++Y Y I + Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISIKDAVEVPLNFSARYSAKQKTYKYLIYNKN 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYYYPYQLDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNSYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|323493306|ref|ZP_08098429.1| tRNA pseudouridine synthase A [Vibrio brasiliensis LMG 20546] gi|323312392|gb|EGA65533.1| tRNA pseudouridine synthase A [Vibrio brasiliensis LMG 20546] Length = 264 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +E A+ +V + V AGRTD+GVH QV Sbjct: 1 MRIALCIEYNGTQYFGWQRQREVKSVQEKLEHALSIVANHPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L D I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANL--PDDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILSSGVSHYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ +E L A+DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQEPQWIEWLLAAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|319780351|ref|YP_004139827.1| tRNA pseudouridine synthase A [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166239|gb|ADV09777.1| tRNA pseudouridine synthase A [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 256 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 132/248 (53%), Positives = 176/248 (70%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE + + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAIRLRAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DLV+ W + A+NA+L+ + I+IL ++V F ARFSAI R YLYRI+ R Sbjct: 61 VAHVDLVKAWPSDKVRDAVNAHLQAAGARIAILKATVVSDSFDARFSAIGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP AL+KG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SPIRT++ DV+ Sbjct: 121 RAPAALDKGKVWWVPKRLDAGAMHEAAKVLLGRHDFTTFRSTQCQANSPIRTLERLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG W++ DL+ AL+A+DR CG +APP+GL Sbjct: 181 QGDMIEVRASARSFLHNQVRSMVGSLKRVGDGGWSAADLKTALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEYS 247 + V+Y Sbjct: 241 FLTGVDYP 248 >gi|322514646|ref|ZP_08067676.1| tRNA pseudouridine synthase A [Actinobacillus ureae ATCC 25976] gi|322119437|gb|EFX91539.1| tRNA pseudouridine synthase A [Actinobacillus ureae ATCC 25976] Length = 289 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V V AGRTDSGVH QV Sbjct: 28 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSVVANAPVEAFCAGRTDSGVHGTGQV 87 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L + I++ V + FHARFSA R Y Y I + Sbjct: 88 VHFETETVRPLQSWCFGTNANL--PNDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 145 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ C++ +P R I H +V+ G Sbjct: 146 RSAILPKGVSHYHHELDHQKMHEAGQFLLGENDFSSFRAAKCESHTPWRNIHHLNVSRLG 205 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 206 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 265 Query: 242 DSVEYS 247 V Y Sbjct: 266 VDVHYP 271 >gi|146296772|ref|YP_001180543.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166228689|sp|A4XKB7|TRUA_CALS8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145410348|gb|ABP67352.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 244 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q N ++QG IE AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITGEDVNLVGSGRTDRGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L + ISI + + V F AR+SA +++Y Y I + Sbjct: 61 KANFKTESKIPTEKFPLALNSVL--PNDISIKDAAEVSLDFSARYSAKQKTYKYLIYNHK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + P LD +M+ + ++ +G +DF++F S + +S +R I + Sbjct: 119 FRPAILCNYVYHFPYELDLVSMQKSCEYFIGEYDFSSFCSSGSETNSKVRRIFDCYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I I + A FL+ R G++ VG G++ TD+ ++++DR + G PP GLY Sbjct: 179 NDCIAIYITANGFLYNMARIIAGTILDVGVGRFKPTDIPLIIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|91777254|ref|YP_552462.1| tRNA pseudouridine synthase A [Burkholderia xenovorans LB400] gi|123167830|sp|Q13S27|TRUA_BURXL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91689914|gb|ABE33112.1| tRNA pseudouridine synthase [Burkholderia xenovorans LB400] Length = 270 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSVFCGWQSQPHGNTVQDELERALREFAQTPVQTIVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRADVSWVRGTNSFL--PKTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + +LD + M+ AA HL+G HDF+ FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAARAGWVHAALDVDAMQAAAAHLIGEHDFSAFRSSQCQSKTPVKHLYQIDVRQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L +G G+ + + L ++DR+ P P+GLY Sbjct: 179 GDFIHFRFRANAFLHHMVRNLMGCLVYIGRGRRPVEWMAEVLASRDREFAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|197302933|ref|ZP_03167984.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC 29176] gi|197298014|gb|EDY32563.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC 29176] Length = 297 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q N ++I+G + + +TG+ V V GA RTD+GVHA Sbjct: 26 MKRIRLTVAYDGTDYCGWQVQNNVATIEGELNTVLTQLTGQTVKVIGASRTDAGVHARGN 85 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P A+NA L + I +++ V +H R ++Y YR++ ++ Sbjct: 86 VAVFDTESSIPPERFLYAVNALL--PEDIVVVDSCEVAADWHPRHCNTEKTYEYRVLNQK 143 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + LD E MR AA +L G HDF +F ++H +RTI +V Sbjct: 144 LPDPMRRRDTYFVSFPLDLERMRQAAGYLEGEHDFKSFCNVHTHVEDTVRTIYRLEVIRE 203 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I RV FL+ +R G+L VG G ++ L+A+DR+ G PP+GL Sbjct: 204 ENVITFRVRGNGFLYNMVRILAGTLIGVGRGLIDPEEIPAMLEAKDRQAAGMTVPPQGLT 263 Query: 241 FDSVEY 246 ++Y Sbjct: 264 LMKIDY 269 >gi|323703515|ref|ZP_08115161.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] gi|323531506|gb|EGB21399.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] Length = 249 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 133/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + + Y+G+ Y G+Q Q+ +++Q +E A+ V E V V GAGRTD+GVHA Sbjct: 3 MKNIKLTVAYDGTNYHGFQEQRGTGLATVQEVLEAALSKVANETVQVIGAGRTDAGVHAR 62 Query: 59 RQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F VP + A+N+ L D I+++ V FHARFSA ++Y Y I Sbjct: 63 GQVVNFRSTNWPVPTEKIHLAVNSLL--PDDIAVIKAEEVPLDFHARFSATAKTYRYSIY 120 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + L + A+ P+ LD E MR AAQ+L+G HDF +F++ +RTI ++ Sbjct: 121 NHRVMSPLHRLYAYHEPRPLDIEAMRQAAQYLLGTHDFKSFQAQGTPVKDTVRTIYRAEL 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S LI + + FL+ +R G+L VG GK + +++ ++A++R G PP Sbjct: 181 VSEPPLIHLYLRGNGFLYNMVRIITGTLLDVGKGKKSPPEMKSIIEARNRTRAGTTVPPH 240 Query: 238 GLYFDSVEY 246 GL VEY Sbjct: 241 GLCLMEVEY 249 >gi|261211961|ref|ZP_05926247.1| tRNA pseudouridine synthase A [Vibrio sp. RC341] gi|260838569|gb|EEX65220.1| tRNA pseudouridine synthase A [Vibrio sp. RC341] Length = 264 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ S V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWASSVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHCELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|190150230|ref|YP_001968755.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263568|ref|ZP_07545183.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692338|sp|B3GXP8|TRUA_ACTP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189915361|gb|ACE61613.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871211|gb|EFN02940.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 262 Score = 308 bits (790), Expect = 5e-82, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|75677245|ref|YP_319666.1| tRNA pseudouridine synthase A [Nitrobacter winogradskyi Nb-255] gi|123759229|sp|Q3SN27|TRUA_NITWN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|74422115|gb|ABA06314.1| tRNA pseudouridine synthase [Nitrobacter winogradskyi Nb-255] Length = 255 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQTNGPSVQGALEAAVKAICGDDVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R ++P L LNA+L+ I +L IV F ARFSA RR Y+YRI R+ Sbjct: 61 VAHCDIARHFMPDRLRDGLNAHLR-PHPIGVLEAEIVPDSFEARFSARRRHYIYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ GR W +P+ LD E M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGRVWRVPRPLDTEAMHAAAQRLLGKHDFTTFRDTECQAKSPEKTLDQLDVIRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W + DL AL A+ R+ CGP+APP+GLY Sbjct: 180 GDNVSIITSARSYLHSQVRSMVGSLVWVGHGRWNADDLSGALAARRREACGPVAPPDGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LARVDYE 246 >gi|310659467|ref|YP_003937188.1| tRNA pseudouridine synthase a [Clostridium sticklandii DSM 519] gi|308826245|emb|CBH22283.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA pseudouridylate synthase I 1) [Clostridium sticklandii] Length = 249 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++IEY+G+ Y GWQRQ N +S+Q IEKAI+ VT + ++G+GRTD+ VHAL Q Sbjct: 1 MRNILILIEYDGTNYNGWQRQPNAASVQEEIEKAIYKVTKKQTDIYGSGRTDAKVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN L D I ILN V ++FH+R+SA ++Y YR++ Sbjct: 61 VANFHTDSAIPTEKFAVALNTNL--PDDIVILNSIEVPEEFHSRYSAKVKTYRYRVLNTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +E+ A+ + + LD + ++ A+ L+G HDF F S + IRTI + Sbjct: 119 VRRPIERNYAYHVREDLDLDIIKTMAKLLIGEHDFKAFSSSGSSVKTTIRTIYDIKITKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++IE FL+ +R VG+L +G K T D+++AL DR GP APP+GL+ Sbjct: 179 NDIIEFEFTGNGFLYNMVRIIVGTLIELGK-KSTRYDIQRALMTGDRGFAGPTAPPQGLF 237 Query: 241 FDSVEYS 247 V Y+ Sbjct: 238 LKKVSYN 244 >gi|332307082|ref|YP_004434933.1| tRNA pseudouridine synthase A [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174411|gb|AEE23665.1| tRNA pseudouridine synthase A [Glaciecola agarilytica 4H-3-7+YE-5] Length = 263 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+G+ GWQRQ S+Q +E+A+ + E + V AGRTD+GVHA QV Sbjct: 1 MRIALGVEYDGAGFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N YL DT+S+ + V FHARFSA R Y Y I Sbjct: 61 VHFETNSQRPDRAWTLGINTYL--PDTVSVRWVKAVPDDFHARFSATARRYRYIIYNSTL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + I LD E M AAQ LVG+HDF++FR+++CQA + RT+ H V G Sbjct: 119 RSGILANGVTHIYGDLDHELMNQAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V A +FLH +R+ G+L +G + +++ L+ +DR + G A P GLY Sbjct: 179 DYIVIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VHVTYP 244 >gi|258627102|ref|ZP_05721898.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603] gi|258580620|gb|EEW05573.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603] Length = 264 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R I H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|167648522|ref|YP_001686185.1| tRNA pseudouridine synthase A [Caulobacter sp. K31] gi|189029993|sp|B0T1S6|TRUA_CAUSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167350952|gb|ABZ73687.1| tRNA pseudouridine synthase A [Caulobacter sp. K31] Length = 249 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 121/247 (48%), Positives = 166/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G Y G+Q Q + S+QG+IE A+ TG+ + + AGRTD+GVHA Q Sbjct: 1 MPRYRLTIEYDGRPYNGFQAQASQPSVQGAIEAAVKAFTGQTIRIAAAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL R+W + ALNA+L + + IS+L+ +V +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLERDWPAETVMNALNAHL-VREAISVLDAVVVSDDWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE+G+ W + K +D + M+ AAQ LVG HDFTTFR + CQA SP++T+D V+ Sbjct: 120 APPALERGKVWHVKKPIDADAMQTAAQALVGLHDFTTFRDMACQAKSPLKTLDVARVSRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + ARSFLH Q+RS G+L VG G+WT+ D+ AL+A+DR CGP+AP +GLY Sbjct: 180 GDEVHLVFEARSFLHRQVRSMTGTLAEVGVGRWTADDVMAALEARDRTACGPVAPADGLY 239 Query: 241 FDSVEYS 247 V Y Sbjct: 240 LTGVGYE 246 >gi|222529670|ref|YP_002573552.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM 6725] gi|254789602|sp|B9MKC1|TRUA_ANATD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222456517|gb|ACM60779.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM 6725] Length = 244 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L ISI + F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISIKDAVEAPLDFSARYSARQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYYYPYQLDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|303251239|ref|ZP_07337417.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252529|ref|ZP_07534425.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261387|ref|ZP_07543062.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302649781|gb|EFL79959.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860121|gb|EFM92138.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869118|gb|EFN00920.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 262 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|16124533|ref|NP_419097.1| tRNA pseudouridine synthase A [Caulobacter crescentus CB15] gi|221233219|ref|YP_002515655.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000] gi|42559871|sp|Q9ABF0|TRUA_CAUCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789610|sp|B8GYF0|TRUA_CAUCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13421415|gb|AAK22265.1| tRNA pseudouridine synthase [Caulobacter crescentus CB15] gi|220962391|gb|ACL93747.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000] Length = 247 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 123/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G Y G+Q Q S+QG+IE A+ G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGRPYAGFQAQATLPSVQGAIEAAVKAFCGQEVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L + +SIL+ + ++ +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLDKDWPAQTVFNALNAHLTR-EAVSILSAEVAEEGWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+KGR W + K LD E M AAQHL+G HDFTTFR +HCQ+ SP++T+D V Sbjct: 120 APPALDKGRVWHMKKDLDHEAMHAAAQHLIGLHDFTTFRDMHCQSKSPVKTLDVARVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + ARSFLH Q+RS G+L VG G+WT D++ AL+A+DR+ECGP+AP +GLY Sbjct: 180 GEEIHLDFEARSFLHRQVRSMTGTLVEVGAGRWTVDDVKAALEARDRRECGPVAPADGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LVGVGY 245 >gi|46143880|ref|ZP_00204588.1| COG0101: Pseudouridylate synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 262 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|332290494|ref|YP_004421346.1| tRNA pseudouridine synthase A [Gallibacterium anatis UMN179] gi|330433390|gb|AEC18449.1| tRNA pseudouridine synthase A [Gallibacterium anatis UMN179] Length = 265 Score = 308 bits (789), Expect = 5e-82, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + I Y+GS YFGWQ+Q++ SIQ +E+A+ + E + + AGRTD+GVHA Q Sbjct: 1 MKKIALGISYDGSRYFGWQKQQSVQSIQNELEQALSTIANEPIEIFCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ N +L + I++ + V++ FHARFSA+ R Y Y I R Sbjct: 61 VIHFETSASRPLQAWIFGTNVHL--PNDIAVKWSTEVNEDFHARFSALSRRYRYIIYNRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ LD + M IA Q+L+G +DF++FR+ CQ+ SP R + H V+ Sbjct: 119 QRFAILPTGITHHHYPLDEKLMHIAGQYLLGENDFSSFRAAQCQSKSPYRNVHHLQVSRI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + + A +F+H +R+ VGSL +VG+GK ++ LQ +DR P A GLY Sbjct: 179 GDYLIVDIQANAFVHHMVRNIVGSLLVVGEGKQKPEWIKWLLQQRDRSCAAPTAKAAGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LVKVHYP 245 >gi|262402660|ref|ZP_06079221.1| tRNA pseudouridine synthase A [Vibrio sp. RC586] gi|262351442|gb|EEZ00575.1| tRNA pseudouridine synthase A [Vibrio sp. RC586] Length = 264 Score = 308 bits (789), Expect = 6e-82, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDLKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|258622013|ref|ZP_05717042.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573] gi|258585766|gb|EEW10486.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573] Length = 264 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R I H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|83859280|ref|ZP_00952801.1| tRNA pseudouridine synthase A [Oceanicaulis alexandrii HTCC2633] gi|83852727|gb|EAP90580.1| tRNA pseudouridine synthase A [Oceanicaulis alexandrii HTCC2633] Length = 253 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 159/247 (64%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+QG++E A + G V+GAGRTDSGVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFVGWQRQDNGPSVQGALEAAAAKLDGGPREVYGAGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++ + A+N +LK I+++ V +FHARF A RR Y+YR+ R+ Sbjct: 61 VAHVDLEKDLPADKVRDAINHHLK-PHPIAVVEAVRVTDEFHARFKAHRRGYIYRLHARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L +G+ W + + LD E M AAQHLVG HDFTTFR CQA SP++++D V Sbjct: 120 APLTLTRGQVWRVYQPLDVEAMHTAAQHLVGTHDFTTFRDSQCQADSPVKSLDKIAVFHS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + V A SFLH Q+RS VGSL VG GKWT D + AL A DR CGP+APP+GLY Sbjct: 180 GEEIHVTVEAISFLHRQVRSIVGSLVEVGLGKWTPEDFKAALDAADRSRCGPVAPPDGLY 239 Query: 241 FDSVEYS 247 V Y Sbjct: 240 LSLVAYP 246 >gi|269102116|ref|ZP_06154813.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp. damselae CIP 102761] gi|268162014|gb|EEZ40510.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp. damselae CIP 102761] Length = 261 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ YFGWQRQ+ S+Q +EKA+ + E V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYFGWQRQREVDSVQERLEKALAKIANEPVDVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ +NA+L I++ + V FHARF+A R Y Y I Sbjct: 61 VHFDVNVNRKMAAWTMGVNAHL--PSDIAVRWAAEVSDDFHARFTATARRYRYVIYNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H +V+ G Sbjct: 119 RPAILSSGVSHYHGDLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + A +F+H +R+ GSL VG G+ ++ L+ +DR G A EGLY Sbjct: 179 NYVIIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEQKDRTLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|195940683|ref|ZP_03086065.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4024] gi|295098046|emb|CBK87136.1| pseudouridylate synthase I [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 270 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 RIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPISVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 71 HFDTTAVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYVIYNQRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 129 PAVLSQGVTHFYEPLDAERMQRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|226940175|ref|YP_002795248.1| tRNA pseudouridine synthase A [Laribacter hongkongensis HLHK9] gi|226715101|gb|ACO74239.1| TruA [Laribacter hongkongensis HLHK9] Length = 283 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G G+ GWQRQ + ++QG++E A+ + G V V AGRTD+GVHA +QV Sbjct: 26 MRIALGLEYDGRGFAGWQRQPDQDTVQGALEGALSQIAGHPVSVLAAGRTDAGVHASQQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + +N +L +++L + V FHARFSA RSY Y ++ Sbjct: 86 VHFDTGVERPLTAWVRGVNRFL--PPGVAVLWVQPVADDFHARFSACSRSYSYYLMNHPV 143 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL GR LD M+ AA L+G+HDF++FR+ CQA +P++T+ FD++ Sbjct: 144 RPALGAGRVGWFHAPLDVPAMQAAAGLLLGQHDFSSFRAAECQAKTPVKTLARFDISEHD 203 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + A +FLH +R+ VG+L VG G + L A+DR + P P+GLY Sbjct: 204 GLIRFDLQADAFLHHMVRNLVGALVYVGKGAHAPEWMAGLLAARDRTQAPPTFMPDGLYL 263 Query: 242 DSVEYS 247 +V Y Sbjct: 264 TAVGYP 269 >gi|144900443|emb|CAM77307.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1] Length = 245 Score = 307 bits (788), Expect = 7e-82, Method: Composition-based stats. Identities = 125/246 (50%), Positives = 164/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++IEY+G+ + GWQRQ NG S+QG +E AIF G V AGRTD+GVHA Q Sbjct: 1 MPRFKLLIEYHGTPFVGWQRQDNGISVQGEVEAAIFRFCGLETTVTAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL R+ + ALN +LK I++ + IV FHARFSA+ RSYLYRI+ R+ Sbjct: 61 VIHFDLDRDVSAERVQGALNYHLK-PHPIAVRAVEIVPDDFHARFSALGRSYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP+A+E+ R W + L+ E M+ AAQHL+GRHDFT+FR+ CQA SP +T+D V Sbjct: 120 APVAIERERVWWVSVPLNAEAMQEAAQHLLGRHDFTSFRAAACQAQSPDKTLDLLQVTRT 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + ARSFLH Q+R+ VG+LKLVG+GKW ++ AL+A+DR GP APP+GLY Sbjct: 180 DEEIRMIAEARSFLHHQVRNMVGTLKLVGEGKWHPDRVKAALEARDRAAAGPTAPPDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVVY 245 >gi|27365335|ref|NP_760863.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6] gi|37680609|ref|NP_935218.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016] gi|320155720|ref|YP_004188099.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O] gi|31340462|sp|Q8CWK3|TRUA_VIBVU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42559737|sp|Q7M7J4|TRUA_VIBVY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27361482|gb|AAO10390.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6] gi|37199357|dbj|BAC95189.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016] gi|319931032|gb|ADV85896.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O] Length = 264 Score = 307 bits (788), Expect = 8e-82, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ +S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTDYFGWQRQREVASVQEKLEKALSKVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTNVERKMVAWTMGANANL--PKDIAVRWAKAVPDEFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR++ CQ+ SP R + H +V G Sbjct: 119 RPGILGSGVSHYHGELDEKKMHEAGQYLLGENDFTSFRAVQCQSLSPFRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +VG G+ ++ L+A+DRK GP A EGLY Sbjct: 179 HYVVIDIKANAFVHHMVRNITGSLIMVGRGEQDPEWIKWLLEAKDRKLAGPTAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|254501121|ref|ZP_05113272.1| tRNA pseudouridine synthase A [Labrenzia alexandrii DFL-11] gi|222437192|gb|EEE43871.1| tRNA pseudouridine synthase A [Labrenzia alexandrii DFL-11] Length = 272 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 119/246 (48%), Positives = 158/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ N S+Q IE+AI +GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGRPFSGWQRQANAPSVQAVIERAIKAFSGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALN + + D + IL+ + + F ARFSAIRR+Y YRI R Sbjct: 61 VCHADLSKQWPTKTVMGALNFHCQ-PDPVVILDCEEMHEGFDARFSAIRRAYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + G AW + LD + M AAQ VG HDFTTFR CQA SP +T++HF V Sbjct: 120 QPLTHQLGLAWHVKHELDADAMHQAAQEFVGHHDFTTFRHSRCQAKSPEKTLEHFSVYRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +RSFLH Q+RS VG+L+LVG+ +W D+ AL+A+DRK CGP+AP +GLY Sbjct: 180 GDFVIAECSSRSFLHNQVRSMVGTLRLVGEDRWGPGDITNALKARDRKACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|288959244|ref|YP_003449585.1| tRNA pseudouridine synthase A [Azospirillum sp. B510] gi|288911552|dbj|BAI73041.1| tRNA pseudouridine synthase A [Azospirillum sp. B510] Length = 245 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 123/246 (50%), Positives = 174/246 (70%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQ NG S+Q S+E+A+ ++GE+ VHG+GRTD+GVHAL Q Sbjct: 1 MQRWKLTVEYDGRPFVGWQRQDNGPSVQQSLEEAVRRLSGEVARVHGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL + + + L ALN +LK I++L + V + FHAR ++ R+Y+YRI+ R+ Sbjct: 61 VCHFDLEKPFTALKLRDALNFHLK-PAPIAVLEVEAVTEDFHARLTSTGRAYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALE GRAW + + LD + M AAQ LVG+HDF++FR+ CQA SP++T+D V Sbjct: 120 APLALESGRAWHVTRPLDADAMHAAAQVLVGQHDFSSFRAALCQAKSPVKTLDRLAVERQ 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R+ VG+L+LVG GKWT+ D+ +AL+A DR + GP PP+GLY Sbjct: 180 GDEIRVHAAARSFLHHQVRNMVGTLELVGAGKWTADDVRRALEACDRAKAGPTCPPDGLY 239 Query: 241 FDSVEY 246 F + Y Sbjct: 240 FLAARY 245 >gi|15887719|ref|NP_353400.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens str. C58] gi|42559844|sp|Q8UIC9|TRUA_AGRT5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15155280|gb|AAK86185.1| tRNA pseudouridine synthase I [Agrobacterium tumefaciens str. C58] Length = 266 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 146/248 (58%), Positives = 186/248 (75%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G+ Y+GWQRQ+NG S+QG++E A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R+W P L ALNA+L + +++L+ + V + F ARFSA+RR YLYRII R Sbjct: 61 VAHIDLSRDWEPYKLRNALNAHLAMAGEAVAVLDAAAVTEDFDARFSALRRHYLYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ LALE RAW + K LD E M AAQ LVGRHDFTTFRS+HCQA+SP+RT+D DV Sbjct: 121 KSRLALEHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LKL G+G T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRATAQSFLHNQIRSFAGTLKLAGEGGMTPDDVRAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 241 YFMQVDYP 248 >gi|209694634|ref|YP_002262562.1| tRNA pseudouridine synthase A [Aliivibrio salmonicida LFI1238] gi|238057726|sp|B6EIW6|TRUA_ALISL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|208008585|emb|CAQ78760.1| tRNA pseudouridine synthase A [Aliivibrio salmonicida LFI1238] Length = 262 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQ QK+ +S+Q +EKA+ +V E + V AGRTD+GVH QV Sbjct: 1 MRIALCIEYDGASYHGWQSQKDVTSVQEELEKALMVVANEPIEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA L I++ + V++ FHARF+A R Y Y I + Sbjct: 61 VHFDTNSVRKLPVWMVGVNANL--PKNIAVRWVKEVNEDFHARFTATARRYRYIIFNNRQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ ++LD + M A Q+L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 119 RPAIFSHGVSHYHETLDADLMHEAGQYLLGENDFTSFRAVRCQSRTPWRNLIHLKVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG GK ++ L+A+DRK G A EGLY Sbjct: 179 DFIVIDIKANAFVHHMVRNITGSLIEVGRGKQKPEWVQWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 IDVDYP 244 >gi|156933088|ref|YP_001437004.1| tRNA pseudouridine synthase A [Cronobacter sakazakii ATCC BAA-894] gi|166228697|sp|A7MH65|TRUA_ENTS8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156531342|gb|ABU76168.1| hypothetical protein ESA_00898 [Cronobacter sakazakii ATCC BAA-894] Length = 270 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 10 VKIALGIEYDGSKYYGWQRQQEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHATGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L I++ + V +FHARFSA R Y Y I + Sbjct: 70 VHFETTAIRKDAAWTLGVNANL--PGDIAVRWVKDVPAEFHARFSATARRYRYVIYNHRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V FG Sbjct: 128 RPAVLSQGVTHYHLPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNLMHINVERFG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +G G + + + L A+DR A EGLY Sbjct: 188 AYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEYS 247 SV+Y Sbjct: 248 VSVDYP 253 >gi|157961443|ref|YP_001501477.1| tRNA pseudouridine synthase A [Shewanella pealeana ATCC 700345] gi|189030144|sp|A8H305|TRUA_SHEPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157846443|gb|ABV86942.1| tRNA pseudouridine synthase A [Shewanella pealeana ATCC 700345] Length = 261 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ ++Q +EKA+ +V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSQYFGWQRQAEVDTVQERLEKALSIVANEPIAVHCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + +VD +FHARF+A R Y Y I Q Sbjct: 61 VHFETNAIRKETAWTLGVNVNL--PDNIAVRWVKVVDDEFHARFTATARRYRYMIYNHQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P +D M AAQ+L+G DFT+FR++HCQ+++P R + +V G Sbjct: 119 RPGILRSGVSHYPGDIDESKMHQAAQYLLGEQDFTSFRAVHCQSNTPFRCVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL VG G + +E+ L +DR + A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLLEVGLGNQSVEWIEQLLALKDRNKAAATAKPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|312882128|ref|ZP_07741878.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122] gi|309370264|gb|EFP97766.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122] Length = 264 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQK S+Q +EKA+ +V V V AGRTD+GVH Q+ Sbjct: 1 MKIALGIEYNGSQYFGWQRQKEVKSVQECLEKALSIVANHKVEVQCAGRTDAGVHGTGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFETTASRKAVAWTMGANANL--PKDIAVRWAKEVPDEFHARFSATARRYRYLIFNDAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V S G Sbjct: 119 RPGILSSGVSHYHGDLDVTQMHKAGQYLLGENDFTSFRATHCQSKSPWRNLMHLNVTSHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +VG G+ + L +DRK+ G A EGLY Sbjct: 179 KYIVVDIKANAFVHHMVRNIVGSLLVVGRGEKKPEWIRDLLAIKDRKQAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|260598738|ref|YP_003211309.1| tRNA pseudouridine synthase A [Cronobacter turicensis z3032] gi|260217915|emb|CBA32500.1| tRNA pseudouridine synthase A [Cronobacter turicensis z3032] Length = 262 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E V V AGRTD+GVHA Q Sbjct: 1 MRKIALGIEYDGSKYYGWQRQQEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +NA L I++ + V +FHARFSA R Y Y I + Sbjct: 61 VVHFETTAVRKDAAWTLGVNANL--PGDIAVRWVKDVPAEFHARFSATARRYRYVIYNHR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V F Sbjct: 119 LRPAVLSQGVTHYHLPLDAQRMHRAAQCLIGENDFTSFRAVQCQSRTPWRNLMHINVERF 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G + + + L A+DR A EGLY Sbjct: 179 GAYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRTLAAATAKAEGLY 238 Query: 241 FDSVEYS 247 SV+Y Sbjct: 239 LVSVDYP 245 >gi|148977676|ref|ZP_01814237.1| tRNA pseudouridine synthase A [Vibrionales bacterium SWAT-3] gi|145963044|gb|EDK28313.1| tRNA pseudouridine synthase A [Vibrionales bacterium SWAT-3] Length = 264 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANANM--PKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSHSPWRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 HYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|15641014|ref|NP_230645.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587328|ref|ZP_01677099.1| tRNA pseudouridine synthase A [Vibrio cholerae 2740-80] gi|147674772|ref|YP_001216471.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|153819838|ref|ZP_01972505.1| tRNA pseudouridine synthase A [Vibrio cholerae NCTC 8457] gi|183179415|ref|ZP_02957626.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-3] gi|227081173|ref|YP_002809724.1| tRNA pseudouridine synthase A [Vibrio cholerae M66-2] gi|229505402|ref|ZP_04394912.1| tRNA pseudouridine synthase A [Vibrio cholerae BX 330286] gi|229510928|ref|ZP_04400407.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|229518049|ref|ZP_04407493.1| tRNA pseudouridine synthase A [Vibrio cholerae RC9] gi|229529907|ref|ZP_04419297.1| tRNA pseudouridine synthase A [Vibrio cholerae 12129(1)] gi|229608421|ref|YP_002879069.1| tRNA pseudouridine synthase A [Vibrio cholerae MJ-1236] gi|254848129|ref|ZP_05237479.1| tRNA pseudouridine synthase A [Vibrio cholerae MO10] gi|255744781|ref|ZP_05418732.1| tRNA pseudouridine synthase A [Vibrio cholera CIRS 101] gi|262151270|ref|ZP_06028406.1| tRNA pseudouridine synthase A [Vibrio cholerae INDRE 91/1] gi|262167166|ref|ZP_06034879.1| tRNA pseudouridine synthase A [Vibrio cholerae RC27] gi|262190865|ref|ZP_06049084.1| tRNA pseudouridine synthase A [Vibrio cholerae CT 5369-93] gi|297578606|ref|ZP_06940534.1| tRNA pseudouridine synthase A [Vibrio cholerae RC385] gi|298498887|ref|ZP_07008694.1| tRNA pseudouridine synthase A [Vibrio cholerae MAK 757] gi|24212594|sp|Q9KTA4|TRUA_VIBCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|172047415|sp|A5F2T4|TRUA_VIBC3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764874|sp|C3LTP7|TRUA_VIBCM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9655462|gb|AAF94160.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548411|gb|EAX58471.1| tRNA pseudouridine synthase A [Vibrio cholerae 2740-80] gi|126509619|gb|EAZ72213.1| tRNA pseudouridine synthase A [Vibrio cholerae NCTC 8457] gi|146316655|gb|ABQ21194.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|183012826|gb|EDT88126.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-3] gi|227009061|gb|ACP05273.1| tRNA pseudouridine synthase A [Vibrio cholerae M66-2] gi|227012816|gb|ACP09026.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|229333681|gb|EEN99167.1| tRNA pseudouridine synthase A [Vibrio cholerae 12129(1)] gi|229344764|gb|EEO09738.1| tRNA pseudouridine synthase A [Vibrio cholerae RC9] gi|229350893|gb|EEO15834.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|229357625|gb|EEO22542.1| tRNA pseudouridine synthase A [Vibrio cholerae BX 330286] gi|229371076|gb|ACQ61499.1| tRNA pseudouridine synthase A [Vibrio cholerae MJ-1236] gi|254843834|gb|EET22248.1| tRNA pseudouridine synthase A [Vibrio cholerae MO10] gi|255737812|gb|EET93206.1| tRNA pseudouridine synthase A [Vibrio cholera CIRS 101] gi|262024387|gb|EEY43075.1| tRNA pseudouridine synthase A [Vibrio cholerae RC27] gi|262030961|gb|EEY49589.1| tRNA pseudouridine synthase A [Vibrio cholerae INDRE 91/1] gi|262033256|gb|EEY51775.1| tRNA pseudouridine synthase A [Vibrio cholerae CT 5369-93] gi|297536200|gb|EFH75033.1| tRNA pseudouridine synthase A [Vibrio cholerae RC385] gi|297543220|gb|EFH79270.1| tRNA pseudouridine synthase A [Vibrio cholerae MAK 757] Length = 264 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 SV+Y Sbjct: 239 VSVDYP 244 >gi|296333145|ref|ZP_06875599.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672848|ref|YP_003864519.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296149761|gb|EFG90656.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411091|gb|ADM36209.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 247 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + + + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAEKWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ +NMR AA+HL+G HDFT+F ++ + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYHLNVQNMREAAKHLLGTHDFTSFCAVKTEVQDKVRTIYELDWAE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + D++ L+A+DR+ G AP GL Sbjct: 179 TDDGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLWNVFYD 246 >gi|197103844|ref|YP_002129221.1| tRNA pseudouridine synthase [Phenylobacterium zucineum HLK1] gi|196477264|gb|ACG76792.1| tRNA pseudouridine synthase [Phenylobacterium zucineum HLK1] Length = 246 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G + G+Q Q +IQG+IE+A+ GE + + AGRTD+GVHA Q Sbjct: 2 MPRYRLLIEYDGRPFNGFQAQDGLPTIQGAIERAVKAFCGEDLRLQAAGRTDTGVHARGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L + I++L S+ + +HARFSA R YLYRI+ R Sbjct: 62 VVHVDLAKDWPAETVRNALNAHL-VPQPIAVLEASVAPEGWHARFSAKERRYLYRILNRM 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL++GR W + K LD E M AAQ LVG HDFTTFR + CQA SP++T+D V Sbjct: 121 APPALDQGRVWHVKKPLDAEAMHEAAQALVGHHDFTTFRDLGCQAKSPMKTLDLASVRRE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + +RSFLH Q+RS G+L VG G+WT DL AL+A+DR+ CGP+AP EGLY Sbjct: 181 GDEVLLEFASRSFLHRQVRSMTGTLAEVGVGRWTRADLVAALEARDRRACGPVAPAEGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LTGVAY 246 >gi|312622107|ref|YP_004023720.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kronotskyensis 2002] gi|312202574|gb|ADQ45901.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kronotskyensis 2002] Length = 244 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L ISI + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISIKDAIEVPLDFSARYSARQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYYYPYQLDVDAMQRTCEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|302876500|ref|YP_003845133.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307687172|ref|ZP_07629618.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302579357|gb|ADL53369.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 244 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +I+EY+G+ Y GWQ+QKN ++QG+IEKAI +T E V + G RTDSGVHA Sbjct: 1 MRNIKLILEYDGTKYSGWQKQKNSVTVQGTIEKAIEAITKESVELIGCSRTDSGVHAKGY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + A+NA L + I IL+ V + FH+RF+ I ++Y Y ++ R Sbjct: 61 TANFFTNSKIPIERFYIAINAKL--PEDIVILSSEEVPEDFHSRFNCIGKTYCYSVLNRV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ + + +P+ L + M+ AA+ VG +DF FR++ + +S +RTI +V Sbjct: 119 SYPAMYRNYLYHVPRKLSIDEMKKAAESFVGTYDFNAFRNLGTEVASTVRTIHRIEVEEH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I I V FL+ +R G+L VG G+ S ++ L+++DR G AP GL Sbjct: 179 GDIINILVTGDGFLYNMVRIIAGTLVEVGLGQKRSDQIKVILESKDRNRAGKTAPARGLS 238 Query: 241 FDSVEY 246 D V Y Sbjct: 239 LDKVYY 244 >gi|225573074|ref|ZP_03781829.1| hypothetical protein RUMHYD_01265 [Blautia hydrogenotrophica DSM 10507] gi|225039560|gb|EEG49806.1| hypothetical protein RUMHYD_01265 [Blautia hydrogenotrophica DSM 10507] Length = 245 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +IQG + + + + GE + GA RTD+GVHA+ Sbjct: 1 MKRVGLIVAYDGTNYCGWQVQPNGITIQGELNRCLSELLGEEIETIGASRTDAGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I + FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTETRMPGEKISYALNQRL--PEDIRIQLSEEMPMDFHPRYCDSVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ ++ LD + MR A +L+GRHDF +F Q S +RTI +V F Sbjct: 119 FQIPTERLYSYFYHYKLDEKKMREATSYLIGRHDFASFCGAGAQVKSTVRTIRSVEVERF 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IR+ FL+ +R G+L +G+G++ +++ L A+DR+ GP AP +GL Sbjct: 179 GDMVTIRISGEGFLYNMVRIIAGTLIEIGNGQYPPERMQEILDARDREWAGPTAPAKGLT 238 Query: 241 FDSVEYS 247 ++Y Sbjct: 239 LLGIQYE 245 >gi|262165233|ref|ZP_06032970.1| tRNA pseudouridine synthase A [Vibrio mimicus VM223] gi|262024949|gb|EEY43617.1| tRNA pseudouridine synthase A [Vibrio mimicus VM223] Length = 264 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|261340711|ref|ZP_05968569.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC 35316] gi|288317127|gb|EFC56065.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC 35316] Length = 270 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 RIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVLCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 71 HFETTAVRKDAAWTLGVNANL--PGDIAVRWVKNVPDDFHARFSATARRYRYVIYNQRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 129 PAVLSQGVTHFYEPLDAERMQRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|295093665|emb|CBK82756.1| pseudouridylate synthase I [Coprococcus sp. ART55/1] Length = 247 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +++ + K + + E + V GA RTDSGVHAL Sbjct: 3 MKRVKLIVAYDGTNYCGWQVQINGITVEEVLNKTLSELCHEDIKVIGASRTDSGVHALGN 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I I V FH R+ ++Y Y+I+ R+ Sbjct: 63 VAVFDTESGIPGEKFSFALNQRL--PEDIRIQESCQVADDFHPRYCDTIKTYEYKILNRR 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ + + LD + M+ AA LVG HDF +F S Q + +RTI ++ Sbjct: 121 FDMPTERLYSTFVYYPLDIDKMKRAAAVLVGEHDFKSFCSSRSQVENTVRTITDITIDKA 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L +G G W +E L+A+DR + GP A +GL Sbjct: 181 GDMIHIRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILEAKDRTKAGPKAEAKGLT 240 Query: 241 FDSVEY 246 ++Y Sbjct: 241 LVEIKY 246 >gi|85713817|ref|ZP_01044807.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A] gi|85699721|gb|EAQ37588.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A] Length = 245 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 128/246 (52%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYRLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDCVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + P L LNA+L+ I +L IV F ARFSA RR Y+YRI R+ Sbjct: 61 VAHCDIAKHFAPDRLRDGLNAHLR-PHPIGVLEAEIVPDSFEARFSARRRHYIYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ GR W +P+ LD E M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGRVWRVPRPLDTEAMHDAAQRLLGKHDFTTFRDTECQAKSPEKTLDQLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I +ARS+LH+Q+RS VGSL VG G+W++ DL AL A+ R+ CGP+APP+GLY Sbjct: 180 GDNVSIITLARSYLHSQVRSMVGSLVWVGHGRWSADDLSSALAARRREACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|303252899|ref|ZP_07339058.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247890|ref|ZP_07529926.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648329|gb|EFL78526.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855692|gb|EFM87859.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 262 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKP 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + + +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHYLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|254506845|ref|ZP_05118984.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 16] gi|219550130|gb|EED27116.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 16] Length = 264 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQQDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L I++ V ++FHARF+A R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANL--PGDIAVRWAKEVPEEFHARFTATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M +AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSTGVSHYHGELDEKKMHLAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L A+DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQEPEWIQWLLGAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|153216039|ref|ZP_01950244.1| tRNA pseudouridine synthase A [Vibrio cholerae 1587] gi|153829544|ref|ZP_01982211.1| tRNA pseudouridine synthase A [Vibrio cholerae 623-39] gi|254226230|ref|ZP_04919824.1| tRNA pseudouridine synthase A [Vibrio cholerae V51] gi|254291873|ref|ZP_04962656.1| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226] gi|124114489|gb|EAY33309.1| tRNA pseudouridine synthase A [Vibrio cholerae 1587] gi|125621266|gb|EAZ49606.1| tRNA pseudouridine synthase A [Vibrio cholerae V51] gi|148875004|gb|EDL73139.1| tRNA pseudouridine synthase A [Vibrio cholerae 623-39] gi|150422233|gb|EDN14197.1| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226] gi|327483717|gb|AEA78124.1| tRNA pseudouridine synthase A [Vibrio cholerae LMA3894-4] Length = 264 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTSAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 SV+Y Sbjct: 239 VSVDYP 244 >gi|149189278|ref|ZP_01867564.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1] gi|148836837|gb|EDL53788.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1] Length = 267 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ Y+GWQRQ++ SS+Q +EKA+ +V + V V AGRTD+GVH QV Sbjct: 1 MKVALGIEYNGANYYGWQRQRDVSSVQEELEKALSIVANQPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ P +NA L I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFESSVIRKPAAWTMGVNANL--PKDIAVRWAKEVHEEFHARFSATARRYRYVIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M A Q+L+G +DFT+FR++HCQ+ SP R I H +V+ G Sbjct: 119 RPGILSSGISHYHGELDAEKMHQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVSRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL +VG G + +E LQ +DRK G A EGLY Sbjct: 179 PYVVIDIKANAFVHHMVRNITGSLIVVGKGDQSPEWIEWLLQQKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|165976323|ref|YP_001651916.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307250146|ref|ZP_07532106.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256957|ref|ZP_07538734.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|238687566|sp|B0BPI7|TRUA_ACTPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|165876424|gb|ABY69472.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306857811|gb|EFM89907.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864532|gb|EFM96438.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 262 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + + +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHYLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|240144416|ref|ZP_04743017.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|257203524|gb|EEV01809.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] Length = 294 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + K + + GE +VV GA RTDSGVH+L + Sbjct: 48 MRVKMIVAYDGTNYKGWQVQPNGITIEEVLNKNLSNLLGEQIVVSGASRTDSGVHSLGNI 107 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD + ALN L + I + V+ +H R+ R++Y YRI+ R Sbjct: 108 AVFDTNTRMPADKIAFALNQRL--PEDIVVQGSCEVEDGWHPRYQNSRKTYEYRILNRTF 165 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + + LD E M+ AA +L G HDF +F +I Q + +RTI DV G Sbjct: 166 RMPTRRLDTYFYHYPLDVEKMKKAASYLEGEHDFKSFCAIGAQVKTTVRTIYACDVEKEG 225 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L VG G ++ L +DR GP AP GL Sbjct: 226 DIITIRVTGNGFLYNMVRIIAGTLVQVGGGAIKPEAVKGILAKKDRSAAGPTAPAHGLTM 285 Query: 242 DSVEYS 247 +E+ Sbjct: 286 MGIEFE 291 >gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM 16841] gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM 16841] Length = 247 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +I+ + + + + GE + V GA RTDSGVH++ Sbjct: 1 MKRVKLIVAYDGTNYCGWQVQPNGITIEQVLNENLSKLLGEEITVTGASRTDSGVHSMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I + + V +H R+ R++Y YRI+ R Sbjct: 61 VAIFDTETRMPADKISFALNQRL--PEDIVVQDSCEVPSDWHPRYQVSRKTYEYRILNRT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + LD + M+ AA +LVG HDF +F ++ Q + RTI +V Sbjct: 119 FRMPNRRLDTYFYHHKLDVDKMKQAASYLVGEHDFKSFCAVGAQVKTTTRTIYSCEVEKD 178 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++I IRV FL+ +R G+L VG G+ ++ + L +DR GP AP GL Sbjct: 179 GNDIITIRVTGNGFLYNMVRIIAGTLIRVGGGEMAPDEIPQILGKKDRTAAGPTAPAHGL 238 Query: 240 YFDSVEY 246 +EY Sbjct: 239 TMMGIEY 245 >gi|262171995|ref|ZP_06039673.1| tRNA pseudouridine synthase A [Vibrio mimicus MB-451] gi|261893071|gb|EEY39057.1| tRNA pseudouridine synthase A [Vibrio mimicus MB-451] Length = 264 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLITVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|307245766|ref|ZP_07527852.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254739|ref|ZP_07536566.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259179|ref|ZP_07540909.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853468|gb|EFM85687.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862265|gb|EFM94232.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866846|gb|EFM98704.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 262 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGISHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|218548227|ref|YP_002382018.1| tRNA pseudouridine synthase A [Escherichia fergusonii ATCC 35469] gi|226708655|sp|B7LLF2|TRUA_ESCF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218355768|emb|CAQ88381.1| pseudouridylate synthase I [Escherichia fergusonii ATCC 35469] gi|324112855|gb|EGC06831.1| tRNA pseudouridine synthase A [Escherichia fergusonii B253] gi|325496642|gb|EGC94501.1| tRNA pseudouridine synthase A [Escherichia fergusonii ECD227] Length = 270 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|114568998|ref|YP_755678.1| tRNA pseudouridine synthase A [Maricaulis maris MCS10] gi|122316778|sp|Q0ASJ7|TRUA_MARMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114339460|gb|ABI64740.1| tRNA pseudouridine synthase A [Maricaulis maris MCS10] Length = 249 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 124/247 (50%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ N S+Q S+E+A + G V+V+GAGRTDSGVHAL Q Sbjct: 1 MPRYRITIEYDGRPFSGWQRQDNAPSVQESLERAAEKLDGAPVLVYGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++ + A+N +LK D ++++ + V FHARFSA RR YLYR+I R+ Sbjct: 61 VAHLDLAKDLSTDKVRDAINYHLK-PDPVAVIEAARVSDDFHARFSATRRHYLYRMIDRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L++G+ W + + LD E M AAQ L+G+HDFTTFR CQA SP++++D V+ + Sbjct: 120 APLTLDRGQVWRVTRKLDAEAMHHAAQALLGQHDFTTFRDAQCQAESPVKSLDAISVSRY 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +++ ARSFLH Q+RS VGSL VG GKW++ D ++AL A DR CGP+AP +GLY Sbjct: 180 GEEVQLTCSARSFLHRQVRSMVGSLVEVGVGKWSARDFKRALDAADRSRCGPVAPADGLY 239 Query: 241 FDSVEYS 247 +V+Y Sbjct: 240 LTAVDYP 246 >gi|320183774|gb|EFW58608.1| tRNA pseudouridine synthase A [Shigella flexneri CDC 796-83] Length = 270 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L D I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|121602227|ref|YP_989569.1| tRNA pseudouridine synthase A [Bartonella bacilliformis KC583] gi|166228679|sp|A1UUB6|TRUA_BARBK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120614404|gb|ABM45005.1| tRNA pseudouridine synthase A [Bartonella bacilliformis KC583] Length = 247 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 168/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ ++QG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQAELRTVQGAVEQAIFHFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++W + ALNA+L+ I+ILN+ + F AR SA++R YL++I+ R Sbjct: 61 VAHVDFEKDWHVNTIHNALNAHLRQQGDNIAILNVENIPDSFDARLSAVKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP AL R W +P+ L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RAPPALNAKRVWWLPRPLNADAMHKAAQKLVGKHDFTTFRSAHCQAKSPIRTLECLDVQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE+AL A+DR CG +APP GL Sbjct: 181 EGEEIFLYARARSFLHHQIRSFAGSLMEVGIGRWTAQDLEEALHAKDRARCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLTQVDY 247 >gi|113969768|ref|YP_733561.1| tRNA pseudouridine synthase A [Shewanella sp. MR-4] gi|123325149|sp|Q0HKB3|TRUA_SHESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113884452|gb|ABI38504.1| tRNA pseudouridine synthase A [Shewanella sp. MR-4] Length = 261 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWAKEVDDSFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR++ CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDADKMHVAAQALLGEQDFTSFRAVQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|92119152|ref|YP_578881.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14] gi|123264920|sp|Q1QH76|TRUA_NITHX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91802046|gb|ABE64421.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14] Length = 245 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDAVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + P L LNA+L+ I +L IV F ARFSA+RR Y+YRI R+ Sbjct: 61 VAHCDIAKHFAPNRLRDGLNAHLR-PHPIGVLTAEIVPDTFEARFSALRRHYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ G W +P+ LD M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGHVWRVPRPLDTLAMHAAAQRLIGKHDFTTFRDTECQAKSPEKTLDQLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+W++ DL AL + R+ CGP+APP+GLY Sbjct: 180 GDTVTIVTSARSFLHSQVRSMVGSLVWVGHGRWSADDLSNALAERRREACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|157374791|ref|YP_001473391.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3] gi|189030145|sp|A8FTU0|TRUA_SHESH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157317165|gb|ABV36263.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3] Length = 261 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G YFGWQRQ S+Q +E+A+ V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGRQYFGWQRQAEVDSVQAQLERALSKVANEPIRVHCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + IVD +FHARFSA R Y Y I Sbjct: 61 VHFETNAIRKDSAWTLGVNVNL--PDDIAVRWVKIVDDEFHARFSATARRYRYMIYNYDF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ VG HDFT+FR++HCQ+ +P R++ +V G Sbjct: 119 RPGILRSGVSHYRGNIDADIMHQAAQQFVGEHDFTSFRALHCQSKTPFRSVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VG+L +G G + + L +DR + P A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGTLLEIGLGNQRPEWIPQLLDLKDRSQAAPTAKPNGLYM 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|82544799|ref|YP_408746.1| tRNA pseudouridine synthase A [Shigella boydii Sb227] gi|123728357|sp|Q31YE0|TRUA_SHIBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81246210|gb|ABB66918.1| pseudouridylate synthase I [Shigella boydii Sb227] gi|332093646|gb|EGI98704.1| tRNA pseudouridine synthase A [Shigella boydii 3594-74] Length = 270 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L D I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAPRKDAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|237748866|ref|ZP_04579346.1| tRNA pseudouridine synthase A [Oxalobacter formigenes OXCC13] gi|229380228|gb|EEO30319.1| tRNA pseudouridine synthase A [Oxalobacter formigenes OXCC13] Length = 261 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 94/250 (37%), Positives = 134/250 (53%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ + GWQ Q +G ++Q +++AIF T + AGRTD+GVHA Q Sbjct: 1 MKRIALGIEYDGTNWRGWQTQPDGMTVQDQLQEAIFRFTRTRISTMCAGRTDAGVHASEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD---KQFHARFSAIRRSYLYRII 117 V H D + +PV + +NAYL +I++ V FHAR SA+ R Y Y I Sbjct: 61 VVHLDTELDRLPVSWVRGVNAYL--PSSIAVRWACEVPGGKDGFHARSSAMARRYRYLIY 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L K RA + K LD M+ A L+G HDF+ FR+ CQ+ +P++T+ D+ Sbjct: 119 NSPVRSPLWKNRAGWVFKPLDIGLMQKGAGLLLGEHDFSAFRAAECQSITPVKTVKRIDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GNLI A +FLH +R+ VGSL +G G +++ L A+DR P P+ Sbjct: 179 EKQGNLIVFTFEANAFLHHMVRNIVGSLVYIGKGNHPPEWMKQLLDAKDRSLAAPTFMPD 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLSRVHYE 248 >gi|163816009|ref|ZP_02207379.1| hypothetical protein COPEUT_02189 [Coprococcus eutactus ATCC 27759] gi|158448819|gb|EDP25814.1| hypothetical protein COPEUT_02189 [Coprococcus eutactus ATCC 27759] Length = 254 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +++ + K + + E + V GA RTDSGVHAL Sbjct: 10 MKRVKLVVAYDGTNYCGWQVQINGITVEEVLNKTLSELCHENIKVIGASRTDSGVHALGN 69 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I I V FH R+ ++Y Y+I+ R+ Sbjct: 70 VAVFDTESGIPGEKFSFALNQRL--PEDIRIQESCQVADDFHPRYCDTIKTYEYKILNRR 127 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ + + LD + M+ AA LVG HDF +F S Q + +RTI ++ Sbjct: 128 FDMPTERLYSTFVYYPLDIDKMKRAAAVLVGEHDFNSFCSTRSQVENTVRTITDITIDKV 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L +G G W +E L A+DR + GP A +GL Sbjct: 188 GDMIHIRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILAAKDRTKAGPKAEAKGLT 247 Query: 241 FDSVEY 246 ++Y Sbjct: 248 LVEIKY 253 >gi|220928242|ref|YP_002505151.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10] gi|254789632|sp|B8I814|TRUA_CLOCE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219998570|gb|ACL75171.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10] Length = 245 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+G+ Y GWQ QKN ++Q I+KA+ + GE V V G RTD GVHA Q Sbjct: 1 MRKIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVGVTGCSRTDVGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + A+N L D I I N V ++FHAR+SA + Y Y I Sbjct: 61 VAHFLTDSKIPGDKFSYAINNLL--PDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 A+ + R+ + L+ M+ AA + G HDF F++ Q S +R I +V Sbjct: 119 HASAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATGGQVRSTVREIYGMEVYVK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N+I I V FL+ +R G+L VG GK +++ + DR + G AP +GL Sbjct: 179 EDNMISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGKTAPAQGL 238 Query: 240 YFDSVEY 246 Y + Y Sbjct: 239 YLVQIYY 245 >gi|153826201|ref|ZP_01978868.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-2] gi|149740061|gb|EDM54230.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-2] Length = 264 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHDELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL +VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIVVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 SV+Y Sbjct: 239 VSVDYP 244 >gi|330446609|ref|ZP_08310261.1| tRNA pseudouridine synthase A [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490800|dbj|GAA04758.1| tRNA pseudouridine synthase A [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 261 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + + V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPIEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V NA L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFDVNIDRKMVAWTMGANANL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H V G Sbjct: 119 RPAILGTGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L+ +DR G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEEKPEWIKWLLEQKDRTLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|114046997|ref|YP_737547.1| tRNA pseudouridine synthase A [Shewanella sp. MR-7] gi|123131546|sp|Q0HWL5|TRUA_SHESR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113888439|gb|ABI42490.1| tRNA pseudouridine synthase A [Shewanella sp. MR-7] Length = 261 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWAKEVDDSFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR+I CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDADKMHVAAQALLGEQDFTSFRAIQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|323977481|gb|EGB72567.1| tRNA pseudouridine synthase A [Escherichia coli TW10509] Length = 270 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|117919927|ref|YP_869119.1| tRNA pseudouridine synthase A [Shewanella sp. ANA-3] gi|166229837|sp|A0KV94|TRUA_SHESA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|117612259|gb|ABK47713.1| tRNA pseudouridine synthase A [Shewanella sp. ANA-3] Length = 261 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWAKEVDDTFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR+I CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDTDKMHVAAQALLGEQDFTSFRAIQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|146312509|ref|YP_001177583.1| tRNA pseudouridine synthase A [Enterobacter sp. 638] gi|166991163|sp|A4WCV2|TRUA_ENT38 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145319385|gb|ABP61532.1| tRNA pseudouridine synthase A [Enterobacter sp. 638] Length = 270 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS Y+GWQRQ S+Q +EKA+ V + + V AGRTD+GVH QV Sbjct: 11 RIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANQPIAVCCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 71 HFETTSVRKDAAWTLGVNANL--PGDIAVRWVKDVPDDFHARFSATARRYRYIIYNQRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 129 PAVLGQGVTHFYEPLDAERMQRAAQSLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|163801903|ref|ZP_02195800.1| tRNA pseudouridine synthase A [Vibrio sp. AND4] gi|159174411|gb|EDP59215.1| tRNA pseudouridine synthase A [Vibrio sp. AND4] Length = 264 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQQELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANANM--PSDIAVRWAVEVSDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNMMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L A+DRK G A EGLY Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPAWIKSLLDAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|170691065|ref|ZP_02882231.1| tRNA pseudouridine synthase A [Burkholderia graminis C4D1M] gi|170144314|gb|EDT12476.1| tRNA pseudouridine synthase A [Burkholderia graminis C4D1M] Length = 270 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 131/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGIQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVHTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E V + N +L TIS+ + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELERADVSWVRGTNTFL--PKTISVQWAKPMPEAFHARFSAFERTYYYLLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + LD E MR AA HL+G HDF+ FRS CQA +PI+ + D+ Sbjct: 119 VRSPMLAARAGWVHTPLDIEAMRAAAAHLIGEHDFSAFRSSQCQAKTPIKHLHQIDIEQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G + + + L ++DR+ P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNLMGCLVYIGKRRRPVEWMAEVLASRDRESAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|90579292|ref|ZP_01235102.1| tRNA pseudouridine synthase A [Vibrio angustum S14] gi|90440125|gb|EAS65306.1| tRNA pseudouridine synthase A [Vibrio angustum S14] Length = 261 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V NA+L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFDINIDRKMVAWTMGANAHL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H V G Sbjct: 119 RPAILGNGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ +E L ++R G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEENPEWIEWLLAQKNRTLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|91792843|ref|YP_562494.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217] gi|123061034|sp|Q12P55|TRUA_SHEDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91714845|gb|ABE54771.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217] Length = 261 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y GWQRQ S+Q +EKA+ L+ E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSSYCGWQRQVEVDSVQAQLEKALSLIANEPIEVVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L DTI++ + +VD FHARFSA R Y Y I + Sbjct: 61 VHFDTTVIRPDSAWTLGVNANL--PDTIAVRWVKLVDDSFHARFSATARRYRYVIYNHKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + +D M AAQ L+G HDFT+FR++ CQ+ SP R++ +V G Sbjct: 119 RPGLLRHGLSHYHGDIDETLMHQAAQQLLGEHDFTSFRAMQCQSKSPFRSVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL +G G + K + +DR++ A P GLY Sbjct: 179 MYIMVDIKANAFLHHMVRNIVGSLLEIGLGNQPLNWISKLIAVKDRRQAAATAKPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|84394308|ref|ZP_00993032.1| tRNA pseudouridine synthase A [Vibrio splendidus 12B01] gi|84375076|gb|EAP91999.1| tRNA pseudouridine synthase A [Vibrio splendidus 12B01] Length = 264 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANANM--PKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSRSPWRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 HYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEWIQWLLEAKDRKVAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|323967759|gb|EGB63171.1| tRNA pseudouridine synthase A [Escherichia coli M863] gi|327252589|gb|EGE64248.1| tRNA pseudouridine synthase A [Escherichia coli STEC_7v] Length = 270 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|261493083|ref|ZP_05989622.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311262|gb|EEY12426.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 279 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 19 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I ++ Sbjct: 79 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFNQKL 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M A Q+L+G +DF++FR+ CQ+++P R I H +V+ G Sbjct: 137 RSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHHLNVSRQG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VG+L +G GK + L+ +DR++ P A EGLY Sbjct: 197 NYVIVDIQANAFVHHMVRNIVGTLLEIGQGKQPVEWAKWVLEQRDREKAAPTAKAEGLYL 256 Query: 242 DSVEYS 247 V Y Sbjct: 257 VEVHYP 262 >gi|153008677|ref|YP_001369892.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi ATCC 49188] gi|166228741|sp|A6WYK9|TRUA_OCHA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151560565|gb|ABS14063.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi ATCC 49188] Length = 251 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 128/247 (51%), Positives = 168/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++Q +IE A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQNAIELAFKKFCGEDLTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W + A+NA+L + +SILN+ F ARFSA R YLYRI R Sbjct: 61 VVHVDLTKDWGAGKVRDAVNAHLVMADERVSILNVERTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA++ RAW + K LD E M AA+ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVDYQRAWWVQKRLDAEAMHEAAKRLLGEHDFTTFRATQCQAKSPVKTLDRLDVIR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDYVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAKDRKACGQVAPPYGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLIGVDY 247 >gi|326203861|ref|ZP_08193723.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] gi|325985959|gb|EGD46793.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] Length = 245 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +IIEY+G+ Y GWQ QKN ++Q +++KAI + GE V V G RTD GVHA Q Sbjct: 1 MRKIKIIIEYDGTNYHGWQVQKNAKTVQETVQKAISKLLGEGVGVTGCSRTDVGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + A+N L D I I + V ++FHAR+S + Y Y I Sbjct: 61 VAHFLTDSQIPGDKFSYAINNLL--PDDIVIKHSEEVSEEFHARYSTKGKKYRYLIYNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 P A+ + R+ + LD E M+ AA++ +G HDF F++ Q S +R I +V+ Sbjct: 119 HPSAIMRNRSCHVRPVLDIEQMKKAARYFIGEHDFAAFQATGGQVRSTVREIYSMEVSGK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N+I I V FL+ +R G+L VG GK +++ + DR + G AP +GL Sbjct: 179 EDNMIYIEVSGNGFLYNMVRIIAGTLIYVGMGKLQESEIPGIIAGLDRTKSGKTAPAQGL 238 Query: 240 YFDSVEY 246 Y + Y Sbjct: 239 YLMEIYY 245 >gi|254362514|ref|ZP_04978619.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica PHL213] gi|153094111|gb|EDN75015.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica PHL213] Length = 261 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I ++ Sbjct: 61 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFNQKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M A Q+L+G +DF++FR+ CQ+++P R I H +V+ G Sbjct: 119 RSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VG+L +G G+ + L+ +DR++ P A EGLY Sbjct: 179 NYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWVLEQRDREKAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VEVHYP 244 >gi|118497491|ref|YP_898541.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida U112] gi|195536184|ref|ZP_03079191.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida FTE] gi|254372827|ref|ZP_04988316.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida GA99-3549] gi|166228699|sp|A0Q6C2|TRUA_FRATN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118423397|gb|ABK89787.1| tRNA pseudouridine synthase A [Francisella novicida U112] gi|151570554|gb|EDN36208.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3549] gi|194372661|gb|EDX27372.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida FTE] Length = 258 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGRNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|91211615|ref|YP_541601.1| tRNA pseudouridine synthase A [Escherichia coli UTI89] gi|110642522|ref|YP_670252.1| tRNA pseudouridine synthase A [Escherichia coli 536] gi|117624508|ref|YP_853421.1| tRNA pseudouridine synthase A [Escherichia coli APEC O1] gi|157155365|ref|YP_001463662.1| tRNA pseudouridine synthase A [Escherichia coli E24377A] gi|191170294|ref|ZP_03031848.1| tRNA pseudouridine synthase A [Escherichia coli F11] gi|215487531|ref|YP_002329962.1| tRNA pseudouridine synthase A [Escherichia coli O127:H6 str. E2348/69] gi|218559231|ref|YP_002392144.1| tRNA pseudouridine synthase A [Escherichia coli S88] gi|218690478|ref|YP_002398690.1| tRNA pseudouridine synthase A [Escherichia coli ED1a] gi|237704797|ref|ZP_04535278.1| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA] gi|300928489|ref|ZP_07144015.1| tRNA pseudouridine synthase A [Escherichia coli MS 187-1] gi|300986858|ref|ZP_07177840.1| tRNA pseudouridine synthase A [Escherichia coli MS 200-1] gi|306814570|ref|ZP_07448732.1| tRNA pseudouridine synthase A [Escherichia coli NC101] gi|312967618|ref|ZP_07781833.1| tRNA pseudouridine synthase A [Escherichia coli 2362-75] gi|331647974|ref|ZP_08349066.1| tRNA pseudouridine synthase A [Escherichia coli M605] gi|331658401|ref|ZP_08359363.1| tRNA pseudouridine synthase A [Escherichia coli TA206] gi|331683990|ref|ZP_08384586.1| tRNA pseudouridine synthase A [Escherichia coli H299] gi|123049014|sp|Q0TFC8|TRUA_ECOL5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123084414|sp|Q1R994|TRUA_ECOUT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228696|sp|A1ADG7|TRUA_ECOK1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166991161|sp|A7ZPD3|TRUA_ECO24 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708650|sp|B7MG82|TRUA_ECO45 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789634|sp|B7UFX6|TRUA_ECO27 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789636|sp|B7MXZ5|TRUA_ECO81 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91073189|gb|ABE08070.1| tRNA pseudouridylate synthase I [Escherichia coli UTI89] gi|110344114|gb|ABG70351.1| tRNA pseudouridine synthase A [Escherichia coli 536] gi|115513632|gb|ABJ01707.1| tRNA pseudouridine synthase A [Escherichia coli APEC O1] gi|157077395|gb|ABV17103.1| tRNA pseudouridine synthase A [Escherichia coli E24377A] gi|190909810|gb|EDV69395.1| tRNA pseudouridine synthase A [Escherichia coli F11] gi|215265603|emb|CAS10006.1| pseudouridylate synthase I [Escherichia coli O127:H6 str. E2348/69] gi|218366000|emb|CAR03744.1| pseudouridylate synthase I [Escherichia coli S88] gi|218428042|emb|CAR08961.2| pseudouridylate synthase I [Escherichia coli ED1a] gi|226901163|gb|EEH87422.1| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA] gi|281179405|dbj|BAI55735.1| tRNA pseudouridine synthase A [Escherichia coli SE15] gi|294491901|gb|ADE90657.1| tRNA pseudouridine synthase A [Escherichia coli IHE3034] gi|300306347|gb|EFJ60867.1| tRNA pseudouridine synthase A [Escherichia coli MS 200-1] gi|300463484|gb|EFK26977.1| tRNA pseudouridine synthase A [Escherichia coli MS 187-1] gi|305851964|gb|EFM52416.1| tRNA pseudouridine synthase A [Escherichia coli NC101] gi|307626145|gb|ADN70449.1| tRNA pseudouridine synthase A [Escherichia coli UM146] gi|312287815|gb|EFR15720.1| tRNA pseudouridine synthase A [Escherichia coli 2362-75] gi|315288292|gb|EFU47691.1| tRNA pseudouridine synthase A [Escherichia coli MS 110-3] gi|315298147|gb|EFU57411.1| tRNA pseudouridine synthase A [Escherichia coli MS 16-3] gi|320196186|gb|EFW70810.1| tRNA pseudouridine synthase A [Escherichia coli WV_060327] gi|323187957|gb|EFZ73252.1| tRNA pseudouridine synthase A [Escherichia coli RN587/1] gi|323952111|gb|EGB47985.1| tRNA pseudouridine synthase A [Escherichia coli H252] gi|323955889|gb|EGB51643.1| tRNA pseudouridine synthase A [Escherichia coli H263] gi|324009238|gb|EGB78457.1| tRNA pseudouridine synthase A [Escherichia coli MS 57-2] gi|331043698|gb|EGI15836.1| tRNA pseudouridine synthase A [Escherichia coli M605] gi|331056649|gb|EGI28658.1| tRNA pseudouridine synthase A [Escherichia coli TA206] gi|331078942|gb|EGI50144.1| tRNA pseudouridine synthase A [Escherichia coli H299] Length = 270 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|332678185|gb|AEE87314.1| tRNA pseudouridine synthase A [Francisella cf. novicida Fx1] Length = 258 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IINFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|254369374|ref|ZP_04985386.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp. holarctica FSC022] gi|157122324|gb|EDO66464.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp. holarctica FSC022] Length = 258 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNAYRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|296104004|ref|YP_003614150.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058463|gb|ADF63201.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 270 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KVALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVLCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 71 HFETTAVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYVIYNQRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ FG Sbjct: 129 PAVLSQGVTHFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRFGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|261496287|ref|ZP_05992691.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308049|gb|EEY09348.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 279 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 19 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I ++ Sbjct: 79 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFNQKL 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M A Q+L+G +DF++FR+ CQ+++P R I H +V+ G Sbjct: 137 RSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHHLNVSRQG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VG+L +G GK + + L+ +DR++ P A EGLY Sbjct: 197 NYVIVDIQANAFVHHMVRNIVGTLLEIGQGKQSVEWAKWVLEQRDREKAAPTAKAEGLYL 256 Query: 242 DSVEYS 247 V Y Sbjct: 257 VEVHYP 262 >gi|262043366|ref|ZP_06016493.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039278|gb|EEW40422.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 270 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAQRKDAAWTLGVNANL--PGDIAVRWVKRVPADFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSHGVTHFHQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|254374311|ref|ZP_04989793.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548] gi|151572031|gb|EDN37685.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548] Length = 258 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PKDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|121728128|ref|ZP_01681164.1| tRNA pseudouridine synthase A [Vibrio cholerae V52] gi|229512439|ref|ZP_04401912.1| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21] gi|121629596|gb|EAX62018.1| tRNA pseudouridine synthase A [Vibrio cholerae V52] gi|229350520|gb|EEO15467.1| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21] Length = 264 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHS 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 SV+Y Sbjct: 239 VSVDYP 244 >gi|254492043|ref|ZP_05105220.1| tRNA pseudouridine synthase A [Methylophaga thiooxidans DMS010] gi|224462740|gb|EEF79012.1| tRNA pseudouridine synthase A [Methylophaga thiooxydans DMS010] Length = 259 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 101/246 (41%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + GWQ Q N ++QG +EKA +V + V AGRTD+GVHAL QV Sbjct: 1 MRIALGIEYAGTDFCGWQNQPNTRTVQGELEKAASVVANHSIDVFAAGRTDTGVHALNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L I++ + VD +F+ARF+AI+R Y Y I+ R + Sbjct: 61 VHFDTDAIRSERGWLLGINANL--PKDINVAWMKPVDDEFNARFTAIKRRYRYLILNRLS 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ R W LD E M+ AA LVG+HDF+ FR+ CQA SPI+T+D V Sbjct: 119 RSAVHHNRMWWHHHPLDIERMQAAADQLVGKHDFSAFRASECQARSPIKTLDKITVRRQQ 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + V A+SFLH +R+ VG + +GDG L++ DR + G APP+GLY Sbjct: 179 DCIAVDVEAKSFLHHMVRNLVGVMAAIGDGSKPVDWAGDVLRSVDRSQGGVTAPPQGLYL 238 Query: 242 DSVEYS 247 VEY Sbjct: 239 VDVEYP 244 >gi|226309840|ref|YP_002769734.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599] gi|254789606|sp|C0ZIL2|TRUA_BREBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226092788|dbj|BAH41230.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599] Length = 244 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 122/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++ Y+G+ + G+Q Q + ++QG IE A+ VTGE + V G+GRTD+GVHA Q Sbjct: 1 MKRLRCVLAYDGTDFSGFQVQPDQVTVQGEIEAALNRVTGEDIQVFGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD LN L D+I I + VD FHARF + Y Y I Sbjct: 61 VIHFDTASNIPMDKWRFVLNNQL--PDSIVIRTVEEVDASFHARFDVQVKEYRYCIDNNP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD + M+ AA +LVG HDFT+F S +RT+ V Sbjct: 119 VADVFRHRYADHVRFPLDVDAMQQAAHYLVGEHDFTSFCSAKTYVEDKVRTVYGLSVEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + FL+ +R VG+L VG GK +L + L A DR++ G AP +GL Sbjct: 179 GDEVWVTCRGNGFLYNMVRIIVGTLVEVGQGKRNPAELREILAACDREKAGKTAPAKGLT 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 MWEVVY 244 >gi|157690932|ref|YP_001485394.1| tRNA pseudouridine synthase A [Bacillus pumilus SAFR-032] gi|166991159|sp|A8F9B7|TRUA_BACP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157679690|gb|ABV60834.1| tRNA-pseudouridine synthase I [Bacillus pumilus SAFR-032] Length = 247 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 ++ + Y+G+ + G+Q Q ++Q IE A+ + E+V + +GRTDSGVHA Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALAKMHKQDELVPIVASGRTDSGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L D I +L VD+ FHARFS + + Y Y++ T Sbjct: 61 QVIHFDTPLSIPMERWPFALNSLL--PDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A P LD + MR AA +L+G HDFT+F + + + +R I + + Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGYLIGTHDFTSFCAANTEVQDKVREIYTLEWKN 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+RV FL+ +R G+L VG GK+ +++ L A++R+ G AP GL Sbjct: 179 VSDGLEMRVRGNGFLYNMVRIIAGTLLEVGSGKFHPDEIKAMLAARNREAAGKTAPSHGL 238 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 239 YLWEVFYD 246 >gi|261855761|ref|YP_003263044.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2] gi|261836230|gb|ACX95997.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2] Length = 271 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 102/247 (41%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY+GS Y GWQRQ S+Q +E A+ V V V AGRTD+GVHA Q Sbjct: 1 MARIALTLEYDGSRYHGWQRQSEVDSVQARLETALSRVADSPVDVVCAGRTDAGVHASHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD L + ISIL+ VD +FHARFSA RSY Y I+ R Sbjct: 61 VVHFDTEAIRPERAWL--LGVTQSLPSDISILSAQFVDPEFHARFSATARSYRYIILNRM 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL +GR LD M A QHL+G HDF++FR+ CQ+ SP+R+I+ +++ Sbjct: 119 TRSALHRGRITWWRGPLDESAMHEAGQHLLGEHDFSSFRAKDCQSVSPVRSIESLNIHRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A +FLH +R+ VG+L VG G+ + L LQA+DR G AP +GLY Sbjct: 179 GEYVYMDITANAFLHHMVRNIVGTLLPVGAGERPADSLWDILQAKDRSAAGMTAPADGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LVGVRYP 245 >gi|225026395|ref|ZP_03715587.1| hypothetical protein EUBHAL_00644 [Eubacterium hallii DSM 3353] gi|224956284|gb|EEG37493.1| hypothetical protein EUBHAL_00644 [Eubacterium hallii DSM 3353] Length = 256 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 86/254 (33%), Positives = 134/254 (52%), Gaps = 10/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +++ Y+G+ Y GWQ Q NG +++ + K + E + + GA RTDSGVH+ Sbjct: 4 MKRFKLVVAYDGTNYCGWQIQPNGITVEEVLNKTLSRFLKEEIHIIGASRTDSGVHSFGN 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P LC ALN L + I I++ V FH R+ R++Y Y I + Sbjct: 64 VAVFDSETTIPPEKLCFALNPQL--PEDIRIVSSEQVPGDFHPRYCDTRKTYEYHIQNGK 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 PL E+ + L+ L+ + M+ A+Q+LVG HDF +F + QA + +RT+ +V Sbjct: 122 IPLPTERLYSHLVIFPLNIQAMQEASQYLVGTHDFKSFCAAKTQAQTTVRTVTGIEVEAH 181 Query: 179 --SFGNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 S G + IRV FL+ +R G+L VG G + +++ L+A DR + G Sbjct: 182 PLSEGEYPSKKVIIRVTGEGFLYNMVRIISGTLIKVGLGVYPPEHVKQILEACDRSQAGE 241 Query: 233 LAPPEGLYFDSVEY 246 P +GL+ +EY Sbjct: 242 TVPAKGLFLKKIEY 255 >gi|193068139|ref|ZP_03049103.1| tRNA pseudouridine synthase A [Escherichia coli E110019] gi|192958418|gb|EDV88857.1| tRNA pseudouridine synthase A [Escherichia coli E110019] Length = 270 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPDSWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|83594681|ref|YP_428433.1| pseudouridylate synthase [Rhodospirillum rubrum ATCC 11170] gi|123725839|sp|Q2RNZ9|TRUA_RHORT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83577595|gb|ABC24146.1| Pseudouridylate synthase [Rhodospirillum rubrum ATCC 11170] Length = 278 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 168/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY + +EY+G GY GWQRQ NG +IQ S+E+A F + G VHG+GRTDSGVHAL Q Sbjct: 1 MVRYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R + + KALNA+L+ I++++ + V + FHARFSA RSY YRI+ R Sbjct: 61 VAHLDLPRAYGAATVMKALNAHLR-PQPIAVIDAAEVAEDFHARFSAEERSYRYRILNRI 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP L++GR W + + ++ M AAQ LVGRHDF++FR+ CQA SP++T+ V Sbjct: 120 APPTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVKTLSELRVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R+ VG+L LVGDG+WT+ L AL+A DR GP APP+GLY Sbjct: 180 GDEIHVFARARSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLY 239 Query: 241 FDSVEYS 247 F V + Sbjct: 240 FLRVRFP 246 >gi|15802865|ref|NP_288892.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 EDL933] gi|15832456|ref|NP_311229.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. Sakai] gi|26248707|ref|NP_754747.1| tRNA pseudouridine synthase A [Escherichia coli CFT073] gi|82777729|ref|YP_404078.1| tRNA pseudouridine synthase A [Shigella dysenteriae Sd197] gi|168748172|ref|ZP_02773194.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4113] gi|168755075|ref|ZP_02780082.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4401] gi|168761239|ref|ZP_02786246.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4501] gi|168767949|ref|ZP_02792956.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4486] gi|168772951|ref|ZP_02797958.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4196] gi|168780178|ref|ZP_02805185.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4076] gi|168787230|ref|ZP_02812237.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869] gi|168798493|ref|ZP_02823500.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508] gi|170680088|ref|YP_001744518.1| tRNA pseudouridine synthase A [Escherichia coli SMS-3-5] gi|195935697|ref|ZP_03081079.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4024] gi|208807895|ref|ZP_03250232.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4206] gi|208811862|ref|ZP_03253191.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4045] gi|208821544|ref|ZP_03261864.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4042] gi|209397276|ref|YP_002271727.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4115] gi|217327172|ref|ZP_03443255.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14588] gi|218695917|ref|YP_002403584.1| tRNA pseudouridine synthase A [Escherichia coli 55989] gi|218700794|ref|YP_002408423.1| tRNA pseudouridine synthase A [Escherichia coli IAI39] gi|218705848|ref|YP_002413367.1| tRNA pseudouridine synthase A [Escherichia coli UMN026] gi|227887378|ref|ZP_04005183.1| tRNA pseudouridine synthase A [Escherichia coli 83972] gi|254794211|ref|YP_003079048.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14359] gi|261223227|ref|ZP_05937508.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. FRIK2000] gi|261259223|ref|ZP_05951756.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. FRIK966] gi|291283559|ref|YP_003500377.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615] gi|293405784|ref|ZP_06649776.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1412] gi|293410675|ref|ZP_06654251.1| tRNA pseudouridine synthase A [Escherichia coli B354] gi|293415611|ref|ZP_06658254.1| tRNA pseudouridine synthase A [Escherichia coli B185] gi|293446655|ref|ZP_06663077.1| tRNA pseudouridine synthase A [Escherichia coli B088] gi|298381467|ref|ZP_06991066.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1302] gi|300822193|ref|ZP_07102335.1| tRNA pseudouridine synthase A [Escherichia coli MS 119-7] gi|300936897|ref|ZP_07151784.1| tRNA pseudouridine synthase A [Escherichia coli MS 21-1] gi|300983542|ref|ZP_07176636.1| tRNA pseudouridine synthase A [Escherichia coli MS 45-1] gi|301024150|ref|ZP_07187860.1| tRNA pseudouridine synthase A [Escherichia coli MS 69-1] gi|301049077|ref|ZP_07196061.1| tRNA pseudouridine synthase A [Escherichia coli MS 185-1] gi|301303220|ref|ZP_07209345.1| tRNA pseudouridine synthase A [Escherichia coli MS 124-1] gi|307311121|ref|ZP_07590765.1| tRNA pseudouridine synthase A [Escherichia coli W] gi|309784972|ref|ZP_07679605.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1617] gi|309793201|ref|ZP_07687629.1| tRNA pseudouridine synthase A [Escherichia coli MS 145-7] gi|331663835|ref|ZP_08364745.1| tRNA pseudouridine synthase A [Escherichia coli TA143] gi|331669017|ref|ZP_08369865.1| tRNA pseudouridine synthase A [Escherichia coli TA271] gi|331673820|ref|ZP_08374583.1| tRNA pseudouridine synthase A [Escherichia coli TA280] gi|331678264|ref|ZP_08378939.1| tRNA pseudouridine synthase A [Escherichia coli H591] gi|54039780|sp|P65845|TRUA_ECO57 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042085|sp|P65844|TRUA_ECOL6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123755724|sp|Q32DL8|TRUA_SHIDS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708651|sp|B7NNZ9|TRUA_ECO7I RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708653|sp|B7N5T0|TRUA_ECOLU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708654|sp|B1LLS3|TRUA_ECOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057729|sp|B5YXV8|TRUA_ECO5E RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789635|sp|B7LBH2|TRUA_ECO55 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12516677|gb|AAG57447.1|AE005463_10 pseudouridylate synthase I [Escherichia coli O157:H7 str. EDL933] gi|26109112|gb|AAN81315.1|AE016763_274 tRNA pseudouridine synthase A [Escherichia coli CFT073] gi|13362672|dbj|BAB36625.1| pseudouridylate synthase I [Escherichia coli O157:H7 str. Sakai] gi|81241877|gb|ABB62587.1| pseudouridylate synthase I [Shigella dysenteriae Sd197] gi|170517806|gb|ACB15984.1| tRNA pseudouridine synthase A [Escherichia coli SMS-3-5] gi|187771144|gb|EDU34988.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4196] gi|188017261|gb|EDU55383.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4113] gi|189001906|gb|EDU70892.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4076] gi|189357607|gb|EDU76026.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4401] gi|189362830|gb|EDU81249.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4486] gi|189368293|gb|EDU86709.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4501] gi|189372810|gb|EDU91226.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869] gi|189378874|gb|EDU97290.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508] gi|208727696|gb|EDZ77297.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4206] gi|208733139|gb|EDZ81826.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4045] gi|208741667|gb|EDZ89349.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4042] gi|209158676|gb|ACI36109.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4115] gi|209764788|gb|ACI80706.1| pseudouridylate synthase I [Escherichia coli] gi|209764790|gb|ACI80707.1| pseudouridylate synthase I [Escherichia coli] gi|209764792|gb|ACI80708.1| pseudouridylate synthase I [Escherichia coli] gi|209764796|gb|ACI80710.1| pseudouridylate synthase I [Escherichia coli] gi|217319539|gb|EEC27964.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14588] gi|218352649|emb|CAU98430.1| pseudouridylate synthase I [Escherichia coli 55989] gi|218370780|emb|CAR18593.1| pseudouridylate synthase I [Escherichia coli IAI39] gi|218432945|emb|CAR13839.1| pseudouridylate synthase I [Escherichia coli UMN026] gi|222034074|emb|CAP76815.1| tRNA pseudouridine synthase A [Escherichia coli LF82] gi|227835728|gb|EEJ46194.1| tRNA pseudouridine synthase A [Escherichia coli 83972] gi|254593611|gb|ACT72972.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14359] gi|284922306|emb|CBG35391.1| tRNA pseudouridine synthase A [Escherichia coli 042] gi|290763432|gb|ADD57393.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615] gi|291323485|gb|EFE62913.1| tRNA pseudouridine synthase A [Escherichia coli B088] gi|291427992|gb|EFF01019.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1412] gi|291433259|gb|EFF06238.1| tRNA pseudouridine synthase A [Escherichia coli B185] gi|291471143|gb|EFF13627.1| tRNA pseudouridine synthase A [Escherichia coli B354] gi|298278909|gb|EFI20423.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1302] gi|300299124|gb|EFJ55509.1| tRNA pseudouridine synthase A [Escherichia coli MS 185-1] gi|300396694|gb|EFJ80232.1| tRNA pseudouridine synthase A [Escherichia coli MS 69-1] gi|300408504|gb|EFJ92042.1| tRNA pseudouridine synthase A [Escherichia coli MS 45-1] gi|300458008|gb|EFK21501.1| tRNA pseudouridine synthase A [Escherichia coli MS 21-1] gi|300525323|gb|EFK46392.1| tRNA pseudouridine synthase A [Escherichia coli MS 119-7] gi|300841394|gb|EFK69154.1| tRNA pseudouridine synthase A [Escherichia coli MS 124-1] gi|306908627|gb|EFN39124.1| tRNA pseudouridine synthase A [Escherichia coli W] gi|307554380|gb|ADN47155.1| tRNA pseudouridine synthase A [Escherichia coli ABU 83972] gi|308123487|gb|EFO60749.1| tRNA pseudouridine synthase A [Escherichia coli MS 145-7] gi|308927342|gb|EFP72816.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1617] gi|312946937|gb|ADR27764.1| tRNA pseudouridine synthase A [Escherichia coli O83:H1 str. NRG 857C] gi|315061611|gb|ADT75938.1| pseudouridylate synthase I [Escherichia coli W] gi|315255255|gb|EFU35223.1| tRNA pseudouridine synthase A [Escherichia coli MS 85-1] gi|315292275|gb|EFU51627.1| tRNA pseudouridine synthase A [Escherichia coli MS 153-1] gi|320192058|gb|EFW66703.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC1212] gi|320641146|gb|EFX10625.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. G5101] gi|320646361|gb|EFX15284.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str. 493-89] gi|320651631|gb|EFX20011.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str. H 2687] gi|320657383|gb|EFX25185.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662918|gb|EFX30242.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. USDA 5905] gi|320667662|gb|EFX34573.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. LSU-61] gi|323184362|gb|EFZ69738.1| tRNA pseudouridine synthase A [Escherichia coli 1357] gi|323377808|gb|ADX50076.1| tRNA pseudouridine synthase A [Escherichia coli KO11] gi|323944831|gb|EGB40897.1| tRNA pseudouridine synthase A [Escherichia coli H120] gi|326339671|gb|EGD63482.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1125] gi|326344133|gb|EGD67894.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1044] gi|331059634|gb|EGI31611.1| tRNA pseudouridine synthase A [Escherichia coli TA143] gi|331064211|gb|EGI36122.1| tRNA pseudouridine synthase A [Escherichia coli TA271] gi|331069093|gb|EGI40485.1| tRNA pseudouridine synthase A [Escherichia coli TA280] gi|331074724|gb|EGI46044.1| tRNA pseudouridine synthase A [Escherichia coli H591] Length = 270 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|56708110|ref|YP_170006.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110670581|ref|YP_667138.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC198] gi|224457202|ref|ZP_03665675.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|254370594|ref|ZP_04986599.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC033] gi|254874909|ref|ZP_05247619.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|62901197|sp|Q5NG36|TRUA_FRATT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123169371|sp|Q14HI8|TRUA_FRAT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56604602|emb|CAG45654.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320914|emb|CAL09037.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC198] gi|151568837|gb|EDN34491.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC033] gi|254840908|gb|EET19344.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|282159310|gb|ADA78701.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis NE061598] Length = 258 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|291618223|ref|YP_003520965.1| TruA [Pantoea ananatis LMG 20103] gi|291153253|gb|ADD77837.1| TruA [Pantoea ananatis LMG 20103] gi|327394617|dbj|BAK12039.1| tRNA pseudouridine synthase A TruA [Pantoea ananatis AJ13355] Length = 267 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ+ S+Q +E+A+ V V V AGRTD+GVH QV Sbjct: 7 QKLALGIEYDGSRYYGWQRQQEVRSVQEKLERALSKVADHPVSVFCAGRTDAGVHGTGQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V + +NA L D I++ + V FHARFSA R Y Y I ++ Sbjct: 67 VHFETVAQRADAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYLIYNQRL 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 125 RPAILGNGVTHFYYPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVMHLNVTRHG 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + + + L A+DR A EGLY Sbjct: 185 PYVIVDIKANAFVHHMVRNIVGSLMEIGCGNQSESWMAELLAAKDRTLAAATAKAEGLYL 244 Query: 242 DSVEYS 247 +V+Y Sbjct: 245 VAVDYP 250 >gi|86148380|ref|ZP_01066673.1| tRNA pseudouridine synthase A [Vibrio sp. MED222] gi|218708902|ref|YP_002416523.1| tRNA pseudouridine synthase A [Vibrio splendidus LGP32] gi|254764875|sp|B7VL84|TRUA_VIBSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|85833863|gb|EAQ52028.1| tRNA pseudouridine synthase A [Vibrio sp. MED222] gi|218321921|emb|CAV17914.1| tRNA pseudouridine synthase A [Vibrio splendidus LGP32] Length = 264 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANANM--PKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSRSPWRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G ++ L+A+DRK G A EGLY Sbjct: 179 HYIVIDIKANAFVHHMVRNITGSLIAVGKGDQKPEWIQWLLEAKDRKVAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|24113690|ref|NP_708200.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 301] gi|30063744|ref|NP_837915.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T] gi|110806283|ref|YP_689803.1| tRNA pseudouridine synthase A [Shigella flexneri 5 str. 8401] gi|187733598|ref|YP_001881140.1| tRNA pseudouridine synthase A [Shigella boydii CDC 3083-94] gi|191168731|ref|ZP_03030509.1| tRNA pseudouridine synthase A [Escherichia coli B7A] gi|193062289|ref|ZP_03043384.1| tRNA pseudouridine synthase A [Escherichia coli E22] gi|194432876|ref|ZP_03065160.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1012] gi|209919818|ref|YP_002293902.1| tRNA pseudouridine synthase A [Escherichia coli SE11] gi|218554873|ref|YP_002387786.1| tRNA pseudouridine synthase A [Escherichia coli IAI1] gi|256017524|ref|ZP_05431389.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|260844905|ref|YP_003222683.1| pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009] gi|300818078|ref|ZP_07098290.1| tRNA pseudouridine synthase A [Escherichia coli MS 107-1] gi|300918510|ref|ZP_07135103.1| tRNA pseudouridine synthase A [Escherichia coli MS 115-1] gi|300924588|ref|ZP_07140550.1| tRNA pseudouridine synthase A [Escherichia coli MS 182-1] gi|301328823|ref|ZP_07221865.1| tRNA pseudouridine synthase A [Escherichia coli MS 78-1] gi|331653762|ref|ZP_08354763.1| tRNA pseudouridine synthase A [Escherichia coli M718] gi|332278531|ref|ZP_08390944.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|42559800|sp|Q83QR3|TRUA_SHIFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122957319|sp|Q0T2G7|TRUA_SHIF8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708652|sp|B7M6J9|TRUA_ECO8A RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057730|sp|B6I4U6|TRUA_ECOSE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691701|sp|B2TWA0|TRUA_SHIB3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24052758|gb|AAN43907.1| pseudouridylate synthase I [Shigella flexneri 2a str. 301] gi|30041999|gb|AAP17725.1| pseudouridylate synthase I [Shigella flexneri 2a str. 2457T] gi|110615831|gb|ABF04498.1| pseudouridylate synthase I [Shigella flexneri 5 str. 8401] gi|187430590|gb|ACD09864.1| tRNA pseudouridine synthase A [Shigella boydii CDC 3083-94] gi|190901221|gb|EDV60992.1| tRNA pseudouridine synthase A [Escherichia coli B7A] gi|192931955|gb|EDV84554.1| tRNA pseudouridine synthase A [Escherichia coli E22] gi|194418864|gb|EDX34949.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1012] gi|209913077|dbj|BAG78151.1| tRNA pseudouridine synthase A [Escherichia coli SE11] gi|218361641|emb|CAQ99237.1| pseudouridylate synthase I [Escherichia coli IAI1] gi|257760052|dbj|BAI31549.1| pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009] gi|281601759|gb|ADA74743.1| tRNA pseudouridine synthase A [Shigella flexneri 2002017] gi|300414324|gb|EFJ97634.1| tRNA pseudouridine synthase A [Escherichia coli MS 115-1] gi|300419219|gb|EFK02530.1| tRNA pseudouridine synthase A [Escherichia coli MS 182-1] gi|300529222|gb|EFK50284.1| tRNA pseudouridine synthase A [Escherichia coli MS 107-1] gi|300844772|gb|EFK72532.1| tRNA pseudouridine synthase A [Escherichia coli MS 78-1] gi|313651142|gb|EFS15541.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T] gi|320178707|gb|EFW53670.1| tRNA pseudouridine synthase A [Shigella boydii ATCC 9905] gi|320199909|gb|EFW74498.1| tRNA pseudouridine synthase A [Escherichia coli EC4100B] gi|323172001|gb|EFZ57645.1| tRNA pseudouridine synthase A [Escherichia coli LT-68] gi|324020840|gb|EGB90059.1| tRNA pseudouridine synthase A [Escherichia coli MS 117-3] gi|324117804|gb|EGC11703.1| tRNA pseudouridine synthase A [Escherichia coli E1167] gi|331048611|gb|EGI20687.1| tRNA pseudouridine synthase A [Escherichia coli M718] gi|332088449|gb|EGI93567.1| tRNA pseudouridine synthase A [Shigella boydii 5216-82] gi|332090156|gb|EGI95255.1| tRNA pseudouridine synthase A [Shigella dysenteriae 155-74] gi|332100883|gb|EGJ04229.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|332754968|gb|EGJ85333.1| tRNA pseudouridine synthase A [Shigella flexneri 4343-70] gi|332755368|gb|EGJ85732.1| tRNA pseudouridine synthase A [Shigella flexneri K-671] gi|332756607|gb|EGJ86958.1| tRNA pseudouridine synthase A [Shigella flexneri 2747-71] gi|332766138|gb|EGJ96348.1| tRNA pseudouridine synthase A [Shigella flexneri 2930-71] gi|333001463|gb|EGK21031.1| tRNA pseudouridine synthase A [Shigella flexneri VA-6] gi|333001944|gb|EGK21510.1| tRNA pseudouridine synthase A [Shigella flexneri K-218] gi|333002687|gb|EGK22247.1| tRNA pseudouridine synthase A [Shigella flexneri K-272] gi|333016355|gb|EGK35686.1| tRNA pseudouridine synthase A [Shigella flexneri K-304] gi|333016571|gb|EGK35901.1| tRNA pseudouridine synthase A [Shigella flexneri K-227] Length = 270 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|229525612|ref|ZP_04415017.1| tRNA pseudouridine synthase A [Vibrio cholerae bv. albensis VL426] gi|229339193|gb|EEO04210.1| tRNA pseudouridine synthase A [Vibrio cholerae bv. albensis VL426] Length = 264 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTSAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHS 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 SV+Y Sbjct: 239 VSVDYP 244 >gi|261820765|ref|YP_003258871.1| tRNA pseudouridine synthase A [Pectobacterium wasabiae WPP163] gi|261604778|gb|ACX87264.1| tRNA pseudouridine synthase A [Pectobacterium wasabiae WPP163] Length = 283 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 24 KIALGIEYDGSQYYGWQRQNDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQVV 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD+ FHARFSA R Y Y I + Sbjct: 84 HFTTQAIRKDAAWTMGVNANL--PPDIAVRWVKTVDEDFHARFSATARRYRYVIYNHRYR 141 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V G+ Sbjct: 142 PAVLSHGMTHFYHPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRNVNHLKVTRHGD 201 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 202 YIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLVAKDRTLAGATARAEGLYLV 261 Query: 243 SVEYS 247 +V+Y Sbjct: 262 AVDYP 266 >gi|182418813|ref|ZP_02950078.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521] gi|237666467|ref|ZP_04526452.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377310|gb|EDT74871.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521] gi|237657666|gb|EEP55221.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E BL5262] Length = 244 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IE++GS + GWQ+Q G ++Q IE+AIF TGE ++++G+ RTDSGVHA Sbjct: 1 MRNIKLTIEFDGSEFCGWQKQPKGRTVQKVIEEAIFKATGEEIIINGSSRTDSGVHAKDM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F +ALN L +SI+ V + FHAR+S+ ++Y Y II R Sbjct: 61 IANFFTNSTIPGDKFREALNVRL--PKDVSIIRSEEVSEDFHARYSSKGKTYSYTIIHRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + LD +NMR A ++ +G HDF F S + +RTI + Sbjct: 119 ERVSFGHQYVYHWRHDLDIDNMREACKYFIGTHDFRAFMSPGSSIKTTVRTITDLHIEQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I+I V A FL+ +R VG+L VG+ K D++ ++ +RK G + PP GL Sbjct: 179 GEKIKIFVSADGFLYNMVRIIVGTLIKVGNKKLKPEDIQDIIREGNRKRAGMVVPPNGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|300897000|ref|ZP_07115479.1| tRNA pseudouridine synthase A [Escherichia coli MS 198-1] gi|300359181|gb|EFJ75051.1| tRNA pseudouridine synthase A [Escherichia coli MS 198-1] Length = 270 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|23097605|ref|NP_691071.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831] gi|38258776|sp|Q8CXP1|TRUA_OCEIH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22775828|dbj|BAC12106.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831] Length = 253 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q + ++QG +EKA++ + G+ + + +GRTD+GVHA+ Sbjct: 1 MERLKCTVSYDGSDFAGFQVQPDHRTVQGVLEKALYNMHKGKSIRIQASGRTDTGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E +ALN L D + I + ++FHAR+S + Y Y ++ Sbjct: 61 QVIHFDSPLEIPERNWKQALNTLL--PDDVRIQKVEKKTEEFHARYSVKEKEYHYFVLNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN 178 + P ++G + P+ LD E M+ A Q+L G HDFT+F S S +RT+ H + Sbjct: 119 EDPNVFQRGYVYHEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVKGSKVRTLYHVSCH 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G IE FL+ +R + L VG GK D+ L +++R++ G P+G Sbjct: 179 QTGTNIEFIFRGSGFLYNMVRIMMSVLIDVGKGKRNPEDIIDLLASKNRQQIGKTMAPQG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLWRVSYE 247 >gi|221307961|ref|ZP_03589808.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. 168] gi|221312282|ref|ZP_03594087.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317216|ref|ZP_03598510.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321479|ref|ZP_03602773.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. SMY] gi|255767037|ref|NP_388029.2| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. 168] gi|321313820|ref|YP_004206107.1| tRNA pseudouridine synthase A [Bacillus subtilis BSn5] gi|239938721|sp|P70973|TRUA_BACSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225184664|emb|CAB11924.2| pseudouridylate synthase I [Bacillus subtilis subsp. subtilis str. 168] gi|291482520|dbj|BAI83595.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. natto BEST195] gi|320020094|gb|ADV95080.1| tRNA pseudouridine synthase A [Bacillus subtilis BSn5] Length = 247 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + + + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAERWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ ++MR AA+HL+G HDFT+F + + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTEVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + +++ L+A+DR+ G AP GL Sbjct: 179 TADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLWNVYYD 246 >gi|110632752|ref|YP_672960.1| tRNA pseudouridine synthase A [Mesorhizobium sp. BNC1] gi|123162871|sp|Q11LD0|TRUA_MESSB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110283736|gb|ABG61795.1| tRNA pseudouridine synthase A [Chelativorans sp. BNC1] Length = 247 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 140/247 (56%), Positives = 175/247 (70%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G Y GWQRQ S+Q +IEKAI +GE V + GAGRTD+GVHAL Q Sbjct: 1 MHRFRIDIEYDGGPYAGWQRQAGQHSVQEAIEKAIAAFSGEEVTIRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFDL REW + ALNA+L ++ + +SIL V + F ARFSA R YLYRI R Sbjct: 61 VAHFDLSREWKSDKVRDALNAHLTLAGEAVSILRAEAVAEDFDARFSAKARHYLYRIANR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE+GRAW + + LD M AAQ LVG+HDFTTFRS+ CQA SP++T+D DV Sbjct: 121 RSPLALERGRAWHVARRLDAAAMHEAAQRLVGKHDFTTFRSVQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ IEI ARSFLH Q+RS VG+LK VG+G WT+ D + ALQA+DR CGP+APP+GL Sbjct: 181 VGDEIEIHASARSFLHNQVRSLVGTLKKVGEGGWTADDAQAALQARDRAACGPVAPPQGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLVRVDY 247 >gi|16761293|ref|NP_456910.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141011|ref|NP_804353.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412735|ref|YP_149810.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180940|ref|YP_217357.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612896|ref|YP_001586861.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549625|ref|ZP_02343384.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168229744|ref|ZP_02654802.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237394|ref|ZP_02662452.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242494|ref|ZP_02667426.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465920|ref|ZP_02699790.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817894|ref|ZP_02829894.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443793|ref|YP_002041632.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450234|ref|YP_002046424.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471784|ref|ZP_03077768.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734499|ref|YP_002115439.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248953|ref|YP_002147329.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361669|ref|YP_002141305.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245997|ref|YP_002216441.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388490|ref|ZP_03215102.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929209|ref|ZP_03220352.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353481|ref|YP_002227282.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857786|ref|YP_002244437.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022210|ref|ZP_03336657.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161334|ref|ZP_03347044.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426977|ref|ZP_03359727.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646800|ref|ZP_03376853.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852689|ref|ZP_03382221.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583142|ref|YP_002636940.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912353|ref|ZP_04656190.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289827487|ref|ZP_06546099.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|24212558|sp|Q8Z500|TRUA_SALTI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901206|sp|Q5PCV6|TRUA_SALPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81309634|sp|Q57LY6|TRUA_SALCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030141|sp|A9N476|TRUA_SALPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689938|sp|B5BCH8|TRUA_SALPK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690009|sp|B5EZQ2|TRUA_SALA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690247|sp|B4TBN7|TRUA_SALHS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690344|sp|B5FPL2|TRUA_SALDC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690447|sp|B5R349|TRUA_SALEP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690504|sp|B5RCJ3|TRUA_SALG2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238693568|sp|B4SZP0|TRUA_SALNS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238693647|sp|B4TQA4|TRUA_SALSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764863|sp|C0PZZ5|TRUA_SALPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25292042|pir||AF0802 pseudouridylate synthase (EC 4.2.1.70) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503592|emb|CAD07600.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi] gi|29136636|gb|AAO68202.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126992|gb|AAV76498.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128573|gb|AAX66276.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362260|gb|ABX66028.1| hypothetical protein SPAB_00602 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402456|gb|ACF62678.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408538|gb|ACF68757.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458148|gb|EDX46987.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710001|gb|ACF89222.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631471|gb|EDX50031.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093145|emb|CAR58589.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212656|gb|ACH50053.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289616|gb|EDY28979.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940513|gb|ACH77846.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605588|gb|EDZ04133.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321753|gb|EDZ06952.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273262|emb|CAR38227.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325206|gb|EDZ13045.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335762|gb|EDZ22526.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338670|gb|EDZ25434.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344778|gb|EDZ31542.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709589|emb|CAR33934.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467669|gb|ACN45499.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320086803|emb|CBY96575.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322617114|gb|EFY14020.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617581|gb|EFY14480.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624790|gb|EFY21619.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630340|gb|EFY27110.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634520|gb|EFY31253.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639231|gb|EFY35923.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640094|gb|EFY36761.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645687|gb|EFY42211.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652051|gb|EFY48414.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656223|gb|EFY52520.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659375|gb|EFY55622.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665835|gb|EFY62018.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669927|gb|EFY66068.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673912|gb|EFY70009.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678671|gb|EFY74727.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683535|gb|EFY79549.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687610|gb|EFY83580.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715420|gb|EFZ06991.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193556|gb|EFZ78761.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198463|gb|EFZ83565.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204575|gb|EFZ89578.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208487|gb|EFZ93426.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213625|gb|EFZ98414.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218340|gb|EGA03050.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220106|gb|EGA04572.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224520|gb|EGA08802.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232335|gb|EGA16438.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235632|gb|EGA19716.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241209|gb|EGA25245.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244951|gb|EGA28953.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250070|gb|EGA33964.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253854|gb|EGA37679.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254991|gb|EGA38782.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259823|gb|EGA43455.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264157|gb|EGA47664.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270855|gb|EGA54293.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624193|gb|EGE30538.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628574|gb|EGE34917.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 270 Score = 304 bits (779), Expect = 8e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLAKGVTHYYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|127513234|ref|YP_001094431.1| tRNA pseudouridine synthase A [Shewanella loihica PV-4] gi|166229835|sp|A3QFC4|TRUA_SHELP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126638529|gb|ABO24172.1| tRNA pseudouridine synthase A [Shewanella loihica PV-4] Length = 261 Score = 304 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ S+Q +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSRYFGWQRQAEVDSVQAQLERALSFVANEPISIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ VD +FHARF+A R Y Y I Q Sbjct: 61 VHFETNAVRKESAWTLGVNVNL--PDDIAVRWAKDVDDEFHARFTATARRYRYMIYNHQF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P +D M AAQ L+G DFT+FR+I CQ+++P R + +V G Sbjct: 119 RPGILRSGVSHYPGQIDEAKMHEAAQFLLGEQDFTSFRAIQCQSNTPFRCVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL VG G+ + +++ L +DR + A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLLEVGYGRQPVSWIKELLALKDRTQAAATAKPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|170767244|ref|ZP_02901697.1| tRNA pseudouridine synthase A [Escherichia albertii TW07627] gi|170123578|gb|EDS92509.1| tRNA pseudouridine synthase A [Escherichia albertii TW07627] Length = 270 Score = 304 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHHQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|255526613|ref|ZP_05393520.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296187301|ref|ZP_06855697.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|255509721|gb|EET86054.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296048172|gb|EFG87610.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 247 Score = 304 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 ++IEY+G+ Y GWQRQ N SIQ +E+AI T V G+ RTD+GVHA V Sbjct: 6 NIKLVIEYDGTNYCGWQRQDNAESIQQKVEEAIERATKVFSKVTGSSRTDAGVHAEGFVC 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F P +ALN +L + I I+ VDK+FH+RF++I + Y+Y ++T Sbjct: 66 NFFTESSIPPENFKEALNVFL--PEDIVIIESKEVDKEFHSRFNSIGKKYVYTVLTGSHR 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + + K+L+ M+ AA++ +G HDF+ F+ + IRTI +++ GN Sbjct: 124 PAIRRNYVYYFNKNLNIGQMKEAAKYFLGTHDFSAFKKSGSSVKTSIRTIKELNIDIDGN 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I+ ++ FL+ +R VG+L VG ++ D++K + +++R G AP GL + Sbjct: 184 YIKFSIIGDGFLYNMVRIIVGTLLDVGTNRFNPEDIDKIISSKNRSNAGKSAPACGLTLE 243 Query: 243 SVEY 246 V Y Sbjct: 244 KVFY 247 >gi|120598385|ref|YP_962959.1| tRNA pseudouridine synthase A [Shewanella sp. W3-18-1] gi|166229838|sp|A1RIB0|TRUA_SHESW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120558478|gb|ABM24405.1| tRNA pseudouridine synthase A [Shewanella sp. W3-18-1] Length = 261 Score = 304 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ +V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLERALSIVANEPIGLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFDTNAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGNIDADKMHQAAQVLLGEQDFTSFRAVQCQSKTPFRNVHSVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|260773232|ref|ZP_05882148.1| tRNA pseudouridine synthase A [Vibrio metschnikovii CIP 69.14] gi|260612371|gb|EEX37574.1| tRNA pseudouridine synthase A [Vibrio metschnikovii CIP 69.14] Length = 264 Score = 304 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ YFGWQRQ++ S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYFGWQRQRDVISVQEKLEKALSIIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L I++ +V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERNMAAWTMGANANL--PKDIAVRWAKVVADDFHARFSATARRYRYVIYNHAY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M++A Q+L+G +DFT+FR++HCQ+ SP R I H +V+ Sbjct: 119 RPGILSSGVSHYHPELDVQRMQLAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVSRHE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G+ +E L A+DRK A EGLY Sbjct: 179 RYVVVDIKANAFVHHMVRNIVGSLIEVGRGEKEPQWIEWLLAAKDRKLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 +V+Y Sbjct: 239 VAVDYP 244 >gi|161502487|ref|YP_001569599.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189030140|sp|A9MJ57|TRUA_SALAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160863834|gb|ABX20457.1| hypothetical protein SARI_00531 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 270 Score = 304 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ V +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDVAWTLGVNANL--PGDIAVRWVKAVADDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ K LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 129 PAVLAKGVTHYYKPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHISVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|157161806|ref|YP_001459124.1| tRNA pseudouridine synthase A [Escherichia coli HS] gi|170019373|ref|YP_001724327.1| tRNA pseudouridine synthase A [Escherichia coli ATCC 8739] gi|188492228|ref|ZP_02999498.1| tRNA pseudouridine synthase A [Escherichia coli 53638] gi|194436017|ref|ZP_03068119.1| tRNA pseudouridine synthase A [Escherichia coli 101-1] gi|253772758|ref|YP_003035589.1| tRNA pseudouridine synthase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162327|ref|YP_003045435.1| tRNA pseudouridine synthase A [Escherichia coli B str. REL606] gi|256021997|ref|ZP_05435862.1| tRNA pseudouridine synthase A [Escherichia sp. 4_1_40B] gi|300948533|ref|ZP_07162627.1| tRNA pseudouridine synthase A [Escherichia coli MS 116-1] gi|300956414|ref|ZP_07168705.1| tRNA pseudouridine synthase A [Escherichia coli MS 175-1] gi|301023565|ref|ZP_07187329.1| tRNA pseudouridine synthase A [Escherichia coli MS 196-1] gi|301647579|ref|ZP_07247376.1| tRNA pseudouridine synthase A [Escherichia coli MS 146-1] gi|307138983|ref|ZP_07498339.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|312973422|ref|ZP_07787594.1| tRNA pseudouridine synthase A [Escherichia coli 1827-70] gi|331642958|ref|ZP_08344093.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|166991162|sp|A8A2I7|TRUA_ECOHS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030133|sp|B1IXM4|TRUA_ECOLC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157067486|gb|ABV06741.1| tRNA pseudouridine synthase A [Escherichia coli HS] gi|169754301|gb|ACA77000.1| tRNA pseudouridine synthase A [Escherichia coli ATCC 8739] gi|188487427|gb|EDU62530.1| tRNA pseudouridine synthase A [Escherichia coli 53638] gi|194424745|gb|EDX40730.1| tRNA pseudouridine synthase A [Escherichia coli 101-1] gi|242377951|emb|CAQ32720.1| tRNA pseudouridine synthase I [Escherichia coli BL21(DE3)] gi|253323802|gb|ACT28404.1| tRNA pseudouridine synthase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974228|gb|ACT39899.1| tRNA pseudouridine synthase A [Escherichia coli B str. REL606] gi|253978395|gb|ACT44065.1| tRNA pseudouridine synthase A [Escherichia coli BL21(DE3)] gi|299880800|gb|EFI89011.1| tRNA pseudouridine synthase A [Escherichia coli MS 196-1] gi|300316763|gb|EFJ66547.1| tRNA pseudouridine synthase A [Escherichia coli MS 175-1] gi|300451943|gb|EFK15563.1| tRNA pseudouridine synthase A [Escherichia coli MS 116-1] gi|301074269|gb|EFK89075.1| tRNA pseudouridine synthase A [Escherichia coli MS 146-1] gi|309702630|emb|CBJ01959.1| tRNA pseudouridine synthase A [Escherichia coli ETEC H10407] gi|310332017|gb|EFP99252.1| tRNA pseudouridine synthase A [Escherichia coli 1827-70] gi|315615587|gb|EFU96219.1| tRNA pseudouridine synthase A [Escherichia coli 3431] gi|323936608|gb|EGB32895.1| tRNA pseudouridine synthase A [Escherichia coli E1520] gi|323940985|gb|EGB37172.1| tRNA pseudouridine synthase A [Escherichia coli E482] gi|323961391|gb|EGB57002.1| tRNA pseudouridine synthase A [Escherichia coli H489] gi|323973098|gb|EGB68291.1| tRNA pseudouridine synthase A [Escherichia coli TA007] gi|331039756|gb|EGI11976.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|332344100|gb|AEE57434.1| tRNA pseudouridine synthase TruA [Escherichia coli UMNK88] Length = 270 Score = 304 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|320174675|gb|EFW49808.1| tRNA pseudouridine synthase A [Shigella dysenteriae CDC 74-1112] Length = 270 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTVPRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|49473750|ref|YP_031792.1| tRNA pseudouridine synthase A [Bartonella quintana str. Toulouse] gi|51316599|sp|Q6G1G9|TRUA_BARQU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49239253|emb|CAF25574.1| tRNA pseudouridine synthase A [Bartonella quintana str. Toulouse] Length = 247 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 131/247 (53%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQ ++E+AIF +G+ + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAELHTIQSALEQAIFHFSGQQLTTTTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W + ALNAYL+ + I++LN+ V F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFIKNWQTYTVRDALNAYLQKQGEEIAVLNVQNVPDNFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 LSPPALNIKRVWWIPKPLNVDAMHQAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDVYR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLTQVDY 247 >gi|146293537|ref|YP_001183961.1| tRNA pseudouridine synthase A [Shewanella putrefaciens CN-32] gi|166229836|sp|A4Y879|TRUA_SHEPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145565227|gb|ABP76162.1| tRNA pseudouridine synthase A [Shewanella putrefaciens CN-32] gi|319426837|gb|ADV54911.1| tRNA pseudouridine synthase A [Shewanella putrefaciens 200] Length = 261 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ +V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLERALSIVANEPIGLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFDTNAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGNIDADKMHQAAQVLLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|294141648|ref|YP_003557626.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12] gi|293328117|dbj|BAJ02848.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12] Length = 275 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ ++Q +E+A+ V + + VH AGRTD+GVH QV Sbjct: 15 MRVALGIEYDGSKYYGWQRQLEVDTVQAQLERALSKVANQPITVHCAGRTDAGVHGTGQV 74 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + +VD FHARFSA R Y Y I Sbjct: 75 VHFETTAIRKESAWTLGVNVNL--PDDIAVKWVKLVDDDFHARFSATARRYRYLIYNYHL 132 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M AAQH VG HDFT+FR++HCQ+ SP R + +V G Sbjct: 133 RPGILRSGVSHYRGQLDENKMHQAAQHFVGEHDFTSFRALHCQSKSPFRHVHEVNVTRQG 192 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G + + L +DR + P A P GLY Sbjct: 193 MYLCVDIKANAFLHHMVRNIVGSLIEIGQGHQQGDWIVELLALKDRSKAAPTAKPNGLYM 252 Query: 242 DSVEYS 247 V Y Sbjct: 253 VDVTYP 258 >gi|317131990|ref|YP_004091304.1| tRNA pseudouridine synthase A [Ethanoligenens harbinense YUAN-3] gi|315469969|gb|ADU26573.1| tRNA pseudouridine synthase A [Ethanoligenens harbinense YUAN-3] Length = 252 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++ ++G+ Y GWQ QKNG ++Q ++ A+ V V G RTD+GVHAL Sbjct: 1 MRNILLLLRFDGAAYHGWQVQKNGVTVQEVLQNALETVLRHRPPVTGCSRTDAGVHALAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F L +ALNA L D I++ V FHAR+SA + Y+YRI+ Sbjct: 61 ACNFRTEHTIPCQNLVRALNACL--PDDIAVFACREVPPDFHARYSAHEKEYVYRILNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A +GRA +P LD M AA+ +G HDF FR+ +RT+ H V Sbjct: 119 ARDPFWRGRALHVPYPLDEAVMDKAARGFLGTHDFAGFRAAGSDVKDTVRTVFHSGVQRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ RV A FL+ +R VG+L K D+ + ++DR GP AP GLY Sbjct: 179 GDLVLFRVRADGFLYNMVRIMVGTLLYTAQDKLQPADILAVIDSRDRTAAGPTAPAHGLY 238 Query: 241 FDSVEYS 247 + V Y Sbjct: 239 LNRVFYD 245 >gi|16765695|ref|NP_461310.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993057|ref|ZP_02574152.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168261608|ref|ZP_02683581.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263425|ref|ZP_03163499.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|24212561|sp|Q8ZNB9|TRUA_SALTY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16420911|gb|AAL21269.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241680|gb|EDY24300.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328800|gb|EDZ15564.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205349584|gb|EDZ36215.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247574|emb|CBG25401.1| Pseudouridine synthase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994470|gb|ACY89355.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158926|emb|CBW18439.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913359|dbj|BAJ37333.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222930|gb|EFX48001.1| tRNA pseudouridine synthase A ; tRNA Psi38, Psi39 and Psi40 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130701|gb|ADX18131.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989301|gb|AEF08284.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 270 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLAKGVTHYYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|324015393|gb|EGB84612.1| tRNA pseudouridine synthase A [Escherichia coli MS 60-1] Length = 270 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAGLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|16130253|ref|NP_416821.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. MG1655] gi|89109138|ref|AP_002918.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. W3110] gi|170081934|ref|YP_001731254.1| tRNA pseudouridine synthase A [Escherichia coli str. K-12 substr. DH10B] gi|238901493|ref|YP_002927289.1| pseudouridylate synthase I [Escherichia coli BW2952] gi|123176|sp|P07649|TRUA_ECOLI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; Short=PSU-I; AltName: Full=tRNA-uridine isomerase I gi|229557954|sp|B1X929|TRUA_ECODH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259550387|sp|C4ZVL1|TRUA_ECOBW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149242461|pdb|2NQP|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242462|pdb|2NQP|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242463|pdb|2NQP|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242464|pdb|2NQP|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242466|pdb|2NR0|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242467|pdb|2NR0|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242468|pdb|2NR0|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242469|pdb|2NR0|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242475|pdb|2NRE|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|41718|emb|CAA26522.1| unnamed protein product [Escherichia coli K-12] gi|1788657|gb|AAC75378.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. MG1655] gi|1799711|dbj|BAA16175.1| pseudouridylate synthase I [Escherichia coli str. K12 substr. W3110] gi|169889769|gb|ACB03476.1| tRNA pseudouridine synthase A [Escherichia coli str. K-12 substr. DH10B] gi|238863332|gb|ACR65330.1| pseudouridylate synthase I [Escherichia coli BW2952] gi|260448588|gb|ACX39010.1| tRNA pseudouridine synthase A [Escherichia coli DH1] gi|315136953|dbj|BAJ44112.1| tRNA pseudouridine synthase A [Escherichia coli DH1] Length = 270 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|89073216|ref|ZP_01159746.1| tRNA pseudouridine synthase A [Photobacterium sp. SKA34] gi|89050926|gb|EAR56390.1| tRNA pseudouridine synthase A [Photobacterium sp. SKA34] Length = 261 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF++ + V NA+L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFEINIDRKIVAWTMGANAHL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPAILGNGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAMHCQSRSPWRNLIHLNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ +E L ++R G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEEKPEWIEWLLAQKNRTLAGATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|208779289|ref|ZP_03246635.1| tRNA pseudouridine synthase A [Francisella novicida FTG] gi|208745089|gb|EDZ91387.1| tRNA pseudouridine synthase A [Francisella novicida FTG] Length = 258 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNDFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIYKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|254473752|ref|ZP_05087147.1| tRNA pseudouridine synthase A [Pseudovibrio sp. JE062] gi|211957138|gb|EEA92343.1| tRNA pseudouridine synthase A [Pseudovibrio sp. JE062] Length = 302 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 160/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I+Y+G + GWQRQ NG ++QG IE+AI TGE V + GAGRTDSGVHA Q Sbjct: 27 MPRYKITIDYDGRPFVGWQRQDNGPTVQGVIERAIKSFTGETVTIGGAGRTDSGVHATGQ 86 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALN + D ++IL+ F ARFSAIRR Y Y+I R Sbjct: 87 VAHLDLSKDWPAETVKNALNFH-AQPDPVAILDCEKAGLGFDARFSAIRRHYRYKIANRL 145 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL ++G AW + LD E M AAQ L+G HDFTTFR CQA SP +T++ V Sbjct: 146 EPLTHDRGLAWYVKPELDAEAMNEAAQVLLGHHDFTTFRHTRCQAKSPWKTMERICVYRQ 205 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + +RSFLH Q+RS VGSL+LVG+G+WT DL+ AL+A DRK CGP+A PEGLY Sbjct: 206 GYHVFLECSSRSFLHNQVRSMVGSLRLVGEGRWTKDDLKAALEACDRKACGPVAVPEGLY 265 Query: 241 FDSVEY 246 V+Y Sbjct: 266 LTQVDY 271 >gi|220934425|ref|YP_002513324.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. HL-EbGR7] gi|219995735|gb|ACL72337.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. HL-EbGR7] Length = 259 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY+GSG+ GWQ Q G ++Q +E+A+ V V V AGRTD+GVHA Q Sbjct: 1 MMRIALGVEYDGSGFCGWQTQLQGRAVQACVEQALSRVANHPVSVVCAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD N +L IS+L VD F ARFSA R Y Y I+ R Sbjct: 61 VIHFDTESVRTARSWVLGGNTHL--PPEISLLWAKEVDADFSARFSARSRRYRYVILNRW 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E M A Q L+G DFT+FR++ CQA SP+RT+ V Sbjct: 119 VRPGVLHRKVSWHHPPLDAERMHAAGQRLLGEWDFTSFRAVGCQAKSPVRTLLSLSVTRR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + V A +FLH +R+ G L VG+G+ + + L A+DR G APP GLY Sbjct: 179 GDFIYLDVHANAFLHHMVRNIAGVLMAVGEGERPVEWVSEVLHARDRTLGGVTAPPHGLY 238 Query: 241 FDSVEYS 247 VEY Sbjct: 239 LVHVEYE 245 >gi|238895838|ref|YP_002920574.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae NTUH-K2044] gi|329997357|ref|ZP_08302740.1| tRNA pseudouridine synthase A [Klebsiella sp. MS 92-3] gi|238548156|dbj|BAH64507.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328539106|gb|EGF65142.1| tRNA pseudouridine synthase A [Klebsiella sp. MS 92-3] Length = 270 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSHGVTHFHQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|307726601|ref|YP_003909814.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003] gi|307587126|gb|ADN60523.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003] Length = 270 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGTAFCGWQSQPHGNTVQDELERALREFAQTPVHTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E V + N++L TIS+ + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELERADVSWVRGTNSFL--PKTISVQWAKPMPEAFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA + +LD + M AA HL+G HDF+ FRS CQ+ +P++ + D+ Sbjct: 119 VRSPMLAGRAGWVHAALDIDAMHAAAAHLIGEHDFSAFRSSQCQSKTPVKHLYQIDIQQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L +DR+ P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNVMGCLVYIGKGRRPVQWMAEVLAGRDREWAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|323529192|ref|YP_004231344.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1001] gi|323386194|gb|ADX58284.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1001] Length = 270 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVQTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + + N++L T+S+ + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELERADISWVRGTNSFL--PKTVSVQWAKPMPEAFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + SLD + MR AA HL+G HDF+ FRS CQA +P++ + D+ Sbjct: 119 VRSPMLAARAGWVHASLDIDAMREAAVHLIGEHDFSAFRSSQCQAKTPVKHLYQIDIQQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L+ +DR+ P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNVMGCLVYIGKGRRPVQWMAEVLEGRDREWAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|206580474|ref|YP_002237289.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae 342] gi|288934225|ref|YP_003438284.1| tRNA pseudouridine synthase A [Klebsiella variicola At-22] gi|290508428|ref|ZP_06547799.1| tRNA pseudouridine synthase A [Klebsiella sp. 1_1_55] gi|238057733|sp|B5XNR9|TRUA_KLEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206569532|gb|ACI11308.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae 342] gi|288888954|gb|ADC57272.1| tRNA pseudouridine synthase A [Klebsiella variicola At-22] gi|289777822|gb|EFD85819.1| tRNA pseudouridine synthase A [Klebsiella sp. 1_1_55] Length = 270 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSHGVTHFHQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|328676060|gb|AEB28735.1| tRNA pseudouridine synthase A [Francisella cf. novicida 3523] Length = 258 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 127/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQAELEKALSKIANRNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL V+ F++RF+AI R+Y Y I Sbjct: 61 VVNFHSDADRPLSAWQRGANALL--PHDIKILAAQEVNDDFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKLVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|154247231|ref|YP_001418189.1| tRNA pseudouridine synthase A [Xanthobacter autotrophicus Py2] gi|238686729|sp|A7IKI9|TRUA_XANP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154161316|gb|ABS68532.1| tRNA pseudouridine synthase A [Xanthobacter autotrophicus Py2] Length = 245 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 125/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ Y GWQ Q + ++QG++ +A GE V V GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W + A+ A L+ I++L+ V F ARFSA +R YLYRII R+ Sbjct: 61 VAHVDLSRHWRSDTVRDAMTAQLR-PHPIAVLSAEEVPDSFDARFSATKRHYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LAL++ RAW IP+ LD + M AAQ L+G+HDF+TFR+ CQA+SP++T+D DV+ Sbjct: 120 PDLALDRDRAWRIPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQAASPLKTLDQLDVSRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS VGSL VG+G+W++ DLE AL+A DR CGP+AP GLY Sbjct: 180 GDEIRVITSARSFLHHQVRSMVGSLMRVGEGRWSADDLEAALKAADRTRCGPMAPAAGLY 239 Query: 241 FDSVEY 246 +V Y Sbjct: 240 LAAVSY 245 >gi|52078642|ref|YP_077433.1| tRNA pseudouridine synthase A [Bacillus licheniformis ATCC 14580] gi|52784004|ref|YP_089833.1| tRNA pseudouridine synthase A [Bacillus licheniformis ATCC 14580] gi|319649083|ref|ZP_08003291.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2] gi|62901269|sp|Q65P74|TRUA_BACLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52001853|gb|AAU21795.1| pseudouridylate synthase I [Bacillus licheniformis ATCC 14580] gi|52346506|gb|AAU39140.1| TruA [Bacillus licheniformis ATCC 14580] gi|317388783|gb|EFV69602.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2] Length = 247 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 136/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G ++G+Q Q +IQ +EKA+ + E + V +GRTDSGVHA+ Sbjct: 1 MRMKCTISYDGHLFYGYQVQPGQRTIQDELEKALQTLHKAKERIPVVSSGRTDSGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD ALNA L D IS+ V+ QFHARFSA R+ Y Y I Sbjct: 61 QTIHFDSPLSIPEAKWPYALNALL--PDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ +P LD E ++ A+++LVG HDFT+F + + +RT+ + + Sbjct: 119 RHPDVFKRYYAYHVPYDLDMEKVKEASRYLVGTHDFTSFCATKTEVKDKVRTVHELEWSD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +++R+V FL+ +R G+L VG GK++ D+EK + A++R G AP GL Sbjct: 179 TGDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGRTAPAHGL 238 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 239 YLWRVIYD 246 >gi|283796516|ref|ZP_06345669.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|291075930|gb|EFE13294.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|295092580|emb|CBK78687.1| pseudouridylate synthase I [Clostridium cf. saccharolyticum K10] Length = 368 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + +A+ + E + V GA RTDSGVHA+ Sbjct: 1 MKRIRLTVAYDGTNYCGWQLQPNGITIEEVLNRALSELLKEEIQVVGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD P +C ALN L + + + V FH R + ++Y Y+I+ R+ Sbjct: 61 IAVFDTESRIPPEKICFALNQRL--PEDVRVQKSEEVPLTFHPRKANCVKTYEYKILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + L + LD E MR AA LVG HDF +F ++ QA +RTI V+ Sbjct: 119 IDMPLNRLYCHFCYFDLDVEKMRRAAAFLVGEHDFKSFCTVRTQAEETVRTIYSLTVDRG 178 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IR+ FL+ +R G+L +G G W +E+ L+A+DR GP P +GL Sbjct: 179 ADDVIVIRISGSGFLYNMVRIITGTLVKIGMGVWPPEYMEEILEARDRAAAGPTIPAKGL 238 Query: 240 YFDSVEYS 247 S+EY Sbjct: 239 TLVSMEYE 246 >gi|167624561|ref|YP_001674855.1| tRNA pseudouridine synthase A [Shewanella halifaxensis HAW-EB4] gi|189030143|sp|B0TKZ4|TRUA_SHEHH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167354583|gb|ABZ77196.1| tRNA pseudouridine synthase A [Shewanella halifaxensis HAW-EB4] Length = 261 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ ++Q +EKA+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSQYFGWQRQAEVDTVQERLEKALSIVANEPIAVQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + +VD +FHARF+A R Y Y I Q Sbjct: 61 VHFETNAVRKDTAWTLGVNVNL--PDNIAVRWVKVVDDEFHARFTATARRYRYMIYNHQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P +D M AAQ+L+G DFT+FR++ CQ+++P R + +V+ G Sbjct: 119 RPGILRSGVSHYPGVIDEAKMHQAAQYLLGEQDFTSFRAVQCQSNTPFRCVHEVNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL VG G +E+ L +DR + A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLLEVGLGNQPIEWIEQLLALKDRNKAAATAKPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|291614576|ref|YP_003524733.1| tRNA pseudouridine synthase A [Sideroxydans lithotrophicus ES-1] gi|291584688|gb|ADE12346.1| tRNA pseudouridine synthase A [Sideroxydans lithotrophicus ES-1] Length = 254 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 142/246 (57%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGY GWQ Q + +IQ +++ A+ + GE + + AGRTD+GVHAL QV Sbjct: 1 MRIALGIEYDGSGYNGWQSQPDVPNIQDTLQAALSRIAGENISIIAAGRTDTGVHALEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L +++L V +FHARFSA RSY Y +I R + Sbjct: 61 VHFDTGIVRPLASWVRGTNALL--PKDVAVLWAHPVADEFHARFSAQARSYQYVLINRPS 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+ LD E MR+AAQ+L+G HDF+ FRS CQA +P++T+ D+ G Sbjct: 119 RSAVHHGKVGWFHLPLDVEAMRMAAQNLLGEHDFSAFRSSQCQAKTPVKTLAQLDIVQQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I + A +FLH +R+ VG L VG GK+ + + LQ ++RK P P+GLY Sbjct: 179 DIIIFNLTANAFLHHMVRNIVGCLLYVGKGKYPPQWMHELLQGRERKLAAPTFAPDGLYL 238 Query: 242 DSVEYS 247 + Y Sbjct: 239 CHITYD 244 >gi|284047733|ref|YP_003398072.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM 20731] gi|283951954|gb|ADB46757.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM 20731] Length = 245 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR + Y+G+ Y G+QRQKNG +Q +EKA+ V E +++ AGRTD+GVHAL Sbjct: 1 MIRTIKATVAYDGTRYQGFQRQKNGVGVQQVLEKALTEVLKEPILIKAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F P +AL +L I+I +V FHARF A+ ++Y Y+I Sbjct: 61 QVISFATSSRIPPENYRRALEPHL--PPDIAIREAEVVRDDFHARFDAVDKTYQYKIYYS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ W I + LD E M AA L+G+HDFT+F++ Q +SP+RT+ Sbjct: 119 PLPDPTQRNTTWEIREKLDVEAMNRAAALLLGKHDFTSFKNQGSQDTSPVRTLTEAHWVQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GNL + FL+ +R+ VG L VG G+W D + + A++RK+ G AP +GL Sbjct: 179 DGNLYTFTITGDGFLYRMVRNIVGCLVRVGTGQWNEEDFARVMAAKNRKQAGMAAPAQGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLMHVSY 245 >gi|255284006|ref|ZP_05348561.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] gi|255265459|gb|EET58664.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] Length = 245 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q N +I+ + + + GE + V GA RTD+GVHAL Sbjct: 1 MKRVKLIVAYDGTNYSGWQIQPNAVTIESMLNLHLSELLGEPIRVIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + A+N L I I + V FH RF ++Y YRI+ R+ Sbjct: 61 VAVFDTSARMPAEKISYAMNTRL--PQDIRIQDSCEVAADFHPRFCKTIKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + LD ENMR A +LVG HDF + + + + +RTI D+ Sbjct: 119 FPDPTRRLYSLFYYYPLDVENMRRALAYLVGEHDFKSLCTHKEEVENTVRTIYEADIQKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L VG G + +++ L A++R+ G APP+GL Sbjct: 179 GDMISIRISGNGFLYNMVRIIVGTLLRVGSGYYPPEYMQELLAAKNRQAAGETAPPQGLT 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LLEIRY 244 >gi|209764794|gb|ACI80709.1| pseudouridylate synthase I [Escherichia coli] Length = 270 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNYRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|118589718|ref|ZP_01547123.1| tRNA pseudouridine synthase A [Stappia aggregata IAM 12614] gi|118437804|gb|EAV44440.1| tRNA pseudouridine synthase A [Stappia aggregata IAM 12614] Length = 266 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ N S+Q IE+A +GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGRPFSGWQRQANAPSVQAVIERAAKAFSGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALN + + D + IL+ + + + F ARFSAIRRSY YRI R Sbjct: 61 VCHVDLSKDWDARTVMGALNFHCQ-PDPVVILDAAEMHEGFDARFSAIRRSYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + G AW + LD + M AAQ VG HDFTTFR CQA SP +T++ F V Sbjct: 120 PPLTHQLGLAWHVKVHLDADAMHAAAQEFVGHHDFTTFRHTRCQAKSPEKTLEEFRVYRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + +RSFLH Q+RS VGSL+LVG+GKW D+ KAL A+DR CGP+AP +GLY Sbjct: 180 GEFVIAECASRSFLHNQVRSMVGSLRLVGEGKWGPGDITKALAARDRNACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|113461401|ref|YP_719470.1| tRNA pseudouridine synthase A [Haemophilus somnus 129PT] gi|122945393|sp|Q0I4X5|TRUA_HAES1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|112823444|gb|ABI25533.1| pseudouridylate synthetase [Haemophilus somnus 129PT] Length = 269 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ N +S+Q +E A+ V E ++ AGRTDSGVHA QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQANVTSVQEKLESAVSFVANEFCQIYCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LNA L I++ +V + FHARFSA R Y Y I Sbjct: 61 VHFDTKAIRSEKAWTFGLNANL--PADIAVRWAKVVSEDFHARFSATARRYRYLIYNHPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +LD M A Q+L+G HDF++FR+ CQ+++P R I H V Sbjct: 119 RSALFPTGVTHHHVALDHRLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIHHLHVFRQA 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL +G GK ++ L +DR P A P+GLY Sbjct: 179 NYIIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVKYP 244 >gi|194017442|ref|ZP_03056053.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061] gi|194010714|gb|EDW20285.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061] Length = 247 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 ++ + Y+G+ + G+Q Q ++Q IE A+ + E++ + +GRTDSGVHA Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALARMHKQDELIPIVASGRTDSGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L D I +L VD+ FHARFS + + Y Y++ T Sbjct: 61 QVIHFDTPLSIPMERWPFALNSLL--PDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A P LD + MR AA HL+G HDFT+F + + + +R I + + Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGHLIGTHDFTSFCAANTEVQDKVREIYTLEWKN 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+RV FL+ +R G+L +G GK+ +++ L A++R+ G AP GL Sbjct: 179 VSDGLEMRVRGNGFLYNMVRIIAGTLLEIGSGKFHPEEIKAMLAARNREAAGKTAPSHGL 238 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 239 YLWEVFYD 246 >gi|291524335|emb|CBK89922.1| pseudouridylate synthase I [Eubacterium rectale DSM 17629] gi|291527615|emb|CBK93201.1| pseudouridylate synthase I [Eubacterium rectale M104/1] Length = 244 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + + + + E + V GA RTD+GVH+L V Sbjct: 1 MRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLKEDIKVTGASRTDAGVHSLGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD + ALN L + I +++ V FH RFS R++Y YRI+ + Sbjct: 61 CMFDTNTRMPAEKISYALNQKL--PEDIVVVDSCEVSDDFHPRFSKSRKTYEYRILNARF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M AA++L+G HDF +F S + QA + +RTI V+ G Sbjct: 119 RNPTRRLDTYFYHYPLDTEKMSEAAKYLIGEHDFASFCSANSQAQTTVRTIYDCTVSKAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L +G + ++ + A DR GP AP GL Sbjct: 179 DIITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIAATDRAAAGPTAPAHGLTM 238 Query: 242 DSVEYS 247 ++Y Sbjct: 239 IGLKYE 244 >gi|261417639|ref|YP_003251321.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61] gi|319765297|ref|YP_004130798.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52] gi|261374096|gb|ACX76839.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61] gi|317110163|gb|ADU92655.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52] Length = 258 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 122/245 (49%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 R II Y+G+ + G+Q Q ++QG +E+ + + G+ V V +GRTD+GVHA QV Sbjct: 4 RIKCIIAYDGTHFSGYQIQPGKRTVQGELEEVLRRMHKGKGVRVAASGRTDAGVHAYGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KALNA L D I + + D FHARFSA + Y Y++ T Sbjct: 64 IHFDTSLSLSSEQWKKALNAQL--PDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAE 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + P L + M A + G HDFT+F S +RTI V G Sbjct: 122 RDVFRRHYCAWHPYPLHMDAMNEALRLFCGTHDFTSFCSAKTTIEDRVRTIYRAKVKVDG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++E R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EGLY Sbjct: 182 PMLEFRFVGSGFLYNMVRIMVGTVLEIGQGKRSPADISTLLAAKDRRLAGPTAPAEGLYL 241 Query: 242 DSVEY 246 V Y Sbjct: 242 WRVYY 246 >gi|152971246|ref|YP_001336355.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166228703|sp|A6TC04|TRUA_KLEP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150956095|gb|ABR78125.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 270 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSQGVTHFHQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|292488882|ref|YP_003531769.1| pseudouridylate synthase I [Erwinia amylovora CFBP1430] gi|292900028|ref|YP_003539397.1| tRNA pseudouridine synthase A [Erwinia amylovora ATCC 49946] gi|291199876|emb|CBJ47000.1| tRNA pseudouridine synthase A [Erwinia amylovora ATCC 49946] gi|291554316|emb|CBA21677.1| pseudouridylate synthase I [Erwinia amylovora CFBP1430] gi|312173042|emb|CBX81297.1| pseudouridylate synthase I [Erwinia amylovora ATCC BAA-2158] Length = 271 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH+ QV Sbjct: 11 MKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALTRVADGPIAVFCAGRTDAGVHSTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V FHARFSA R Y Y I R+ Sbjct: 71 VHFETTAQRKDAAWTLGVNANL--PADIAVRWVKSVPDDFHARFSATARRYRYVIYNRRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G Sbjct: 129 RPAILAAGVTHFYHPLDVEKMQSAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLNVSRHG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + + L A+DRK A EGLY Sbjct: 189 AYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMSELLAAKDRKLAAATARAEGLYL 248 Query: 242 DSVEYS 247 +V+Y Sbjct: 249 VAVDYP 254 >gi|8569326|pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution gi|8569327|pdb|1DJ0|B Chain B, The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution Length = 264 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 5 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 65 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 123 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 183 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 242 Query: 243 SVEYS 247 +V+Y Sbjct: 243 AVDYP 247 >gi|197117301|ref|YP_002137728.1| tRNA pseudouridine synthase A [Geobacter bemidjiensis Bem] gi|238690881|sp|B5EFM8|TRUA_GEOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|197086661|gb|ACH37932.1| tRNA pseudouridines 38,39,40 synthase [Geobacter bemidjiensis Bem] Length = 250 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q NG ++Q +++A+ + GE +HG+GRTD+GVHA Sbjct: 1 MRNIKLIIEYDGTAYCGWQVQPNGRTVQEVLQEALAAMLGEKTPLHGSGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + LN L I++ V +FH RF A + Y Y I+ Sbjct: 61 VACFKTDKAMPLRAFREGLNCLL--PGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + W + LD + MR A VG HDF FR+ +C A + +R I D+ Sbjct: 119 LRSPLSRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLAPPEGL 239 G L+ + V FL +R G+L VG GK + D+ + LQ DR++ G PP+GL Sbjct: 179 GCLLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLQGGDRQQNSGMTVPPQGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 CLMQVYY 245 >gi|251799612|ref|YP_003014343.1| tRNA pseudouridine synthase A [Paenibacillus sp. JDR-2] gi|247547238|gb|ACT04257.1| tRNA pseudouridine synthase A [Paenibacillus sp. JDR-2] Length = 246 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+G+ + G+Q Q G +IQ IE AI +TGE +++ G+GRTD+GVHA Q Sbjct: 1 MRNIAATVSYDGTDFNGFQSQPYGRTIQQEIELAIKKLTGEDIIILGSGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F ALN L I IL V + FH+R SA R++Y Y I + Sbjct: 61 VFNFLTESTIPAERWAIALNTRL--PKDIVILEAHEVPEAFHSRRSAKRKTYRYTIDMGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + A+ P L+ E M+ LVG HDFT+F SIH +RTI + Sbjct: 119 FPDVFYRRYAFHHPTPLNVEAMQKGLSFLVGEHDFTSFTSIHSTKPHHVRTIYEAYLERE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + + FL+ IR +G+L VG GK D+ + L+ + R GP A P GL Sbjct: 179 GQMLHMYMTGNGFLYNMIRIVMGTLLHVGHGKLKPEDMARILEGRKRSLAGPTAMPHGLM 238 Query: 241 FDSVEYS 247 VEY Sbjct: 239 LMKVEYP 245 >gi|302384321|ref|YP_003820144.1| tRNA pseudouridine synthase A [Brevundimonas subvibrioides ATCC 15264] gi|302194949|gb|ADL02521.1| tRNA pseudouridine synthase A [Brevundimonas subvibrioides ATCC 15264] Length = 247 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 109/247 (44%), Positives = 155/247 (62%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y G+Q Q ++QG +E A+ G+ V + AGRTDSGVHA Q Sbjct: 1 MPRYRLTLEYDGRPYAGFQAQDGLPTVQGVVETAVTAFCGQTVRIAAAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W + ALNA++ + + +++L V +HARFSA R YLYRI+ R Sbjct: 61 VAHVDLDKAWPASTVMNALNAHM-VREGVAVLACEAVPDDWHARFSATGRRYLYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ALE+G+ W + + LD M+ A HL+G HDFTTFR + CQ+ SP +T+D V++ Sbjct: 120 GRPALERGKVWHVRRPLDVAAMQAGADHLIGHHDFTTFRDLACQSKSPEKTLDVARVSAV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + ARSFLH Q+RS G+L VG G+W+ D++ AL+A+DR CGP++P +GLY Sbjct: 180 GEEVHLVFEARSFLHRQVRSMTGTLVEVGLGRWSPDDVKTALEARDRTACGPVSPSDGLY 239 Query: 241 FDSVEYS 247 V Y Sbjct: 240 LTGVAYD 246 >gi|134301921|ref|YP_001121890.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis WY96-3418] gi|166228700|sp|A4IXW8|TRUA_FRATW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134049698|gb|ABO46769.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis WY96-3418] Length = 258 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 131/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q S+EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQESLEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|260869040|ref|YP_003235442.1| pseudouridylate synthase I [Escherichia coli O111:H- str. 11128] gi|257765396|dbj|BAI36891.1| pseudouridylate synthase I [Escherichia coli O111:H- str. 11128] gi|323176756|gb|EFZ62346.1| tRNA pseudouridine synthase A [Escherichia coli 1180] Length = 270 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVMRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|15896350|ref|NP_349699.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum ATCC 824] gi|30913407|sp|Q97EL1|TRUA_CLOAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15026164|gb|AAK81039.1|AE007806_12 Pseudouridylate synthase, TRUA [Clostridium acetobutylicum ATCC 824] gi|325510506|gb|ADZ22142.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum EA 2018] Length = 244 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +EY+G+ Y GWQ+QKN ++Q +EK I +TGE + V G RTDSGVHA Sbjct: 1 MKNVKLTLEYDGTNYCGWQKQKNVVTVQEEVEKIIGEITGEKIDVIGCSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F P LN+ L D I LN V FH+RF ++Y Y I+ R Sbjct: 61 TCNFKTNTVIPPEKFYLVLNSVL--PDDIVALNSEEVPMDFHSRFDNKGKTYSYTILNRL 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+++ + L+C+ MR A ++++G HDFT+F+S + S IRTI + Sbjct: 119 QRAAIDRNYVYQYGHKLNCDLMREATKYILGTHDFTSFKSTGSKVKSNIRTIYEARIVED 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + V FL+ +R VG+L VG+ K T +++ ++++DR + G + P +GL Sbjct: 179 ENKVIFYVTGDGFLYNMVRIIVGTLLEVGEEKITPLNVKTIVESKDRTKAGRVVPAKGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVMY 244 >gi|89256403|ref|YP_513765.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica LVS] gi|115314847|ref|YP_763570.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica OSU18] gi|167010425|ref|ZP_02275356.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FSC200] gi|254367741|ref|ZP_04983762.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica 257] gi|122325138|sp|Q0BLV1|TRUA_FRATO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122999741|sp|Q2A3D7|TRUA_FRATH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89144234|emb|CAJ79507.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica LVS] gi|115129746|gb|ABI82933.1| tRNA-pseudouridine synthase I [Francisella tularensis subsp. holarctica OSU18] gi|134253552|gb|EBA52646.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica 257] Length = 258 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNAYRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|297521911|ref|ZP_06940297.1| tRNA pseudouridine synthase A [Escherichia coli OP50] Length = 259 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 5 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 65 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 123 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 183 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 242 Query: 243 SVEYS 247 +V+Y Sbjct: 243 AVDYP 247 >gi|126208378|ref|YP_001053603.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae L20] gi|166228675|sp|A3N0R2|TRUA_ACTP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126097170|gb|ABN73998.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 262 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD + M +A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGVSHYHYALDHQKMHVAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ V SL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVESLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVHYP 244 >gi|301156483|emb|CBW15954.1| pseudouridylate synthase I [Haemophilus parainfluenzae T3T1] Length = 264 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y GWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKQYCGWQRQEKVRSVQEELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D IS+ +VD +FHARFSA R Y Y + + Sbjct: 61 VHFETTAVRPEKAWAFGTNANL--PDDISVSWAKVVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V G Sbjct: 119 RSAILPEGITHCHLDLDEKKMHQAGQFLLGENDFSSFRAAQCQSNTPWRNVHHLNVVRKG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G ++ L+ +DRK P A PEGLY Sbjct: 179 QFVIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKLAAPTAKPEGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VNVIYP 244 >gi|311278721|ref|YP_003940952.1| tRNA pseudouridine synthase A [Enterobacter cloacae SCF1] gi|308747916|gb|ADO47668.1| tRNA pseudouridine synthase A [Enterobacter cloacae SCF1] Length = 270 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVTVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ E +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAERKDAAWTLGVNANL--PGDIAVRWVKYVADDFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSQGVTHYHQPLDAARMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVERYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 SV+Y Sbjct: 249 SVDYP 253 >gi|209518943|ref|ZP_03267753.1| tRNA pseudouridine synthase A [Burkholderia sp. H160] gi|209500595|gb|EEA00641.1| tRNA pseudouridine synthase A [Burkholderia sp. H160] Length = 270 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ T V AGRTD GVH L Q Sbjct: 1 MTRIALGVQYDGAAFAGWQSQPHGNTVQDELERALREFTRTPVQTVVAGRTDRGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + + NA+L TI + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRVDISWVRGPNAFL--PKTIGVQWAKPMPDDFHARFSAFERTYYYVLYVSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + LD + MR+AA+HL+G HDF+ FRS CQ+ +P + + DV Sbjct: 119 VRSPMLTTRAGWVHTPLDVDAMRLAAEHLIGEHDFSAFRSSQCQSKTPFKHLYQIDVKRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + R A +FLH +R+ +G L +G G+ + + L ++ R P P+GLY Sbjct: 179 GNFVHFRFRANAFLHHMVRNVMGCLIEIGSGRRPAAWMADVLASRSRDCAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|74312835|ref|YP_311254.1| tRNA pseudouridine synthase A [Shigella sonnei Ss046] gi|123759585|sp|Q3YZP3|TRUA_SHISS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|73856312|gb|AAZ89019.1| pseudouridylate synthase I [Shigella sonnei Ss046] gi|323168509|gb|EFZ54189.1| tRNA pseudouridine synthase A [Shigella sonnei 53G] Length = 270 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPERWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|187931655|ref|YP_001891639.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. mediasiatica FSC147] gi|238691562|sp|B2SGK2|TRUA_FRATM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187712564|gb|ACD30861.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. mediasiatica FSC147] Length = 258 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+ +DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEVKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|300703716|ref|YP_003745318.1| tRNA pseudouridylate synthase i [Ralstonia solanacearum CFBP2957] gi|299071379|emb|CBJ42698.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum CFBP2957] Length = 274 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 140/251 (55%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + H D P + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 IVHLDTDLVREPFSWVRGTNAFL--PPTVAVRWAQAVPEDFHARFSAHRRTYYYALVSGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L G+A + +SLD M+ AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRSPLLGGKAGYVMLPPGQSLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTLYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 239 DGLYLAEVGYP 249 >gi|283832251|ref|ZP_06351992.1| tRNA pseudouridine synthase A [Citrobacter youngae ATCC 29220] gi|291071892|gb|EFE10001.1| tRNA pseudouridine synthase A [Citrobacter youngae ATCC 29220] Length = 270 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVSVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETHAVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V FG Sbjct: 129 PAVLGKGVTHYYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVERFGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|170718977|ref|YP_001784140.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336] gi|189030135|sp|B0USP1|TRUA_HAES2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168827106|gb|ACA32477.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336] Length = 269 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ N +S+Q +E A+ V E ++ AGRTDSGVHA QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQANVTSVQEKLESAVSFVANEFCQIYCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LNA L I++ +V + FHARFSA R Y Y I Sbjct: 61 VHFDTKAIRSEKAWTFGLNANL--PADIAVRWAKVVSEDFHARFSATARRYRYLIYNHPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +LD M A Q+L+G HDF++FR+ CQ+++P R I H V Sbjct: 119 RSALFPTGVTHHHVALDHHLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIHHLHVFRQA 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL +G GK ++ L +DR P A P+GLY Sbjct: 179 NYIIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVKYP 244 >gi|308050321|ref|YP_003913887.1| tRNA pseudouridine synthase A [Ferrimonas balearica DSM 9799] gi|307632511|gb|ADN76813.1| tRNA pseudouridine synthase A [Ferrimonas balearica DSM 9799] Length = 263 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G GYFGWQRQ+ +Q +E AI V V V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGHGYFGWQRQREVVGVQERLEAAIAKVANHPVEVACAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P LNA L D I++ V FHARFSA R Y Y I + Sbjct: 61 VHFDAQFDRRPAAWTLGLNANL--PDGIAVRWAQPVSDDFHARFSATARRYRYIIFNNRL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M A Q L+G +DF+ FR+I CQ+ +P R I H V G Sbjct: 119 RPGILRHGVSHYHHPLDEALMHQAGQQLLGENDFSAFRAIQCQSRTPWRNIHHLRVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G + + L+ +DR A EGLY Sbjct: 179 QYVIIDIKANAFVHHMVRNIAGSLMEVGMGNRPVEWIAELLEGKDRNLAAATAKAEGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|194429433|ref|ZP_03061956.1| tRNA pseudouridine synthase A [Escherichia coli B171] gi|194412494|gb|EDX28793.1| tRNA pseudouridine synthase A [Escherichia coli B171] gi|195183057|dbj|BAG66617.1| pseudouridylate synthase I [Escherichia coli O111:H-] Length = 270 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|114562572|ref|YP_750085.1| tRNA pseudouridine synthase A [Shewanella frigidimarina NCIMB 400] gi|122300225|sp|Q084R8|TRUA_SHEFN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114333865|gb|ABI71247.1| tRNA pseudouridine synthase A [Shewanella frigidimarina NCIMB 400] Length = 261 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS + GWQRQ S+Q IEKA+ V E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSSFCGWQRQLEVDSVQAQIEKALSYVANEPITVSCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + +NA L D+++I VD FHAR+SA R Y Y I + Sbjct: 61 VHFDTDVQRPMTAWTQGVNANL--PDSVAIRWAKEVDDSFHARYSATARRYRYVIYNHKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +D M AAQ VG HDFT+FR++HCQ+ +P R + +V G Sbjct: 119 RPGILSAGVSHYHGDIDETLMHKAAQLFVGEHDFTSFRALHCQSKTPFRNVHQVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G + + ++RK P A P GLY Sbjct: 179 MYVMVDIQANAFLHHMVRNIVGSLLQIGLGNQPIEWITELFALKNRKLAAPTAKPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|218508236|ref|ZP_03506114.1| tRNA pseudouridine synthase A [Rhizobium etli Brasil 5] Length = 238 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 147/238 (61%), Positives = 185/238 (77%), Gaps = 1/238 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRITVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+ Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPD 238 >gi|323161584|gb|EFZ47470.1| tRNA pseudouridine synthase A [Escherichia coli E128010] Length = 270 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|229846251|ref|ZP_04466363.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1] gi|229811255|gb|EEP46972.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1] Length = 269 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNANL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGMTHCHLDLDAEKMHQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|85859802|ref|YP_462004.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] gi|85722893|gb|ABC77836.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] Length = 259 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 141/249 (56%), Gaps = 5/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R +++EY+G+ Y GWQRQ N +IQ +E++I +T E V++HG+GRTD+GVHAL Sbjct: 13 MTRRNIKLVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEPVILHGSGRTDAGVHAL 72 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA+F L + LN+ L I I VD++FH+R+SA +SYLYRI+ Sbjct: 73 NQVANFRTSSRIPAANLLRGLNSLL--PGDIVIRETEDVDEEFHSRYSAKSKSYLYRILN 130 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L++ AW I LD E M A L G+HDFT+F + S +RTI ++ Sbjct: 131 SPVRSPLQRNSAWFIRCCLDLEKMAGAISLLCGKHDFTSFCAAGSDVKSCVRTIIRAEIE 190 Query: 179 SF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +I I V A FL +R+ VG+L +G G+ +S + L+A+DR G APP+ Sbjct: 191 RETEQVITISVEADGFLRHMVRNIVGTLVEIGAGQDSSEIMRDILEAKDRGCAGITAPPQ 250 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 251 GLFLQKVSY 259 >gi|253701944|ref|YP_003023133.1| tRNA pseudouridine synthase A [Geobacter sp. M21] gi|259550393|sp|C6E4S9|TRUA_GEOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|251776794|gb|ACT19375.1| tRNA pseudouridine synthase A [Geobacter sp. M21] Length = 247 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q NG ++Q ++E+A+ + G +HG+GRTD+GVHA Sbjct: 1 MRNIKLIIEYDGTAYCGWQVQPNGRTVQEALEEALASMLGGKTALHGSGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + LN L I++ V +FH RF A+ + Y Y ++ Sbjct: 61 VACFQTDKGMPLRAFREGLNCLL--PADIAVREACEVPLEFHPRFDALAKHYRYTMLLDD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + AW + LD + MR A VG HDF FR+ +C A + +R I D+ Sbjct: 119 LRSPLSRLTAWRLKGKLDVDAMRSACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLAPPEGL 239 G + + V FL +R G+L VG GK + D+ + L+ DR++ G PP+GL Sbjct: 179 GPFLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLKGSDRQQNSGMTVPPQGL 238 Query: 240 YFDSVEYS 247 V Y Sbjct: 239 CLMQVYYP 246 >gi|152979369|ref|YP_001344998.1| tRNA pseudouridine synthase A [Actinobacillus succinogenes 130Z] gi|171704324|sp|A6VQ16|TRUA_ACTSZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150841092|gb|ABR75063.1| tRNA pseudouridine synthase A [Actinobacillus succinogenes 130Z] Length = 264 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EYNG YFGWQRQ+ S+Q +EKA+ V E + + AGRTDSGVH QV Sbjct: 1 MKIALGVEYNGKRYFGWQRQEKVLSVQEELEKALSFVANEKIDLFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D I++ D +FHARFSA R Y Y I T Sbjct: 61 VHFETEVVRPERAWAFGTNANL--PDDIAVKWAKTADDEFHARFSATARRYRYLIYTNPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M A Q L+G +DF++FR+ CQ+ +P R + H V G Sbjct: 119 RSAVLPEGVTHCHLPLDHEKMHEAGQFLLGENDFSSFRAAQCQSKTPWRNVHHLQVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G+ ++ L+ ++RK P A P+GLY Sbjct: 179 RYIVVDIQANAFVHHMVRNIVGSLMEVGSGRQPVEWMKWLLEQRNRKLAAPTAKPQGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VRVTYP 244 >gi|227543592|ref|ZP_03973641.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A] gi|300909379|ref|ZP_07126840.1| tRNA-pseudouridine synthase I [Lactobacillus reuteri SD2112] gi|227186432|gb|EEI66503.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A] gi|300893244|gb|EFK86603.1| tRNA-pseudouridine synthase I [Lactobacillus reuteri SD2112] Length = 256 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q N +++ +++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPNPAIPVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + KALN+ L I I +VD FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDIPYHLSNESMRKALNSIL--PLDILIKKAELVDNDFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ L+ E MR AA LVG HDFT+F + QA S +RTI+ + Sbjct: 119 QGEFVNPFKRNYTSHFKYPLNLEKMRKAANDLVGTHDFTSFVASGSQAKSNVRTIESITI 178 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N + FL+ Q+R V L +G + D+ + L+A+DR AP Sbjct: 179 KRDELRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLEAKDRTLARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY +V+Y Sbjct: 239 ASGLYLVNVDY 249 >gi|205372037|ref|ZP_03224854.1| tRNA pseudouridine synthase A [Bacillus coahuilensis m4-4] Length = 251 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++Y+G+ Y G+Q Q N +IQG IEK + + G+ + + +GRTD+GVHA+ Q Sbjct: 4 MRRIKCTVQYDGTWYAGYQVQPNSKTIQGEIEKVLEKIHGKPIRISASGRTDAGVHAIGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ++ N+ L + I ++++ V FH+RF +I + Y Y++ Sbjct: 64 VFHFDTDTKFPVEKWLPIFNSQL--PNDIVVIHVEEVAGSFHSRFGSIEKEYRYKVYRAP 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ +P SL + M A+++L+G HDFT+F S + +RTI + Sbjct: 122 HKSPFLIHHAYHVPHSLSVQKMEEASRYLLGTHDFTSFCSAKTEVEDKVRTIFTISIEEE 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N++ +V FL+ +R +G L VG GK ++++ L+A+DR+ G AP +GLY Sbjct: 182 ENMLTFSLVGNGFLYNMVRIIIGVLIEVGQGKRAPIEVKEILEAKDRRAGGKTAPAQGLY 241 Query: 241 FDSVEYS 247 V+YS Sbjct: 242 LYRVKYS 248 >gi|312113444|ref|YP_004011040.1| tRNA pseudouridine synthase A [Rhodomicrobium vannielii ATCC 17100] gi|311218573|gb|ADP69941.1| tRNA pseudouridine synthase A [Rhodomicrobium vannielii ATCC 17100] Length = 245 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 129/246 (52%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q NG S+Q + +AI TG + GAGRTD+GVHA Q Sbjct: 1 MPRYKITIEYDGTPFSGWQMQANGRSVQDHLARAIERFTGVRAIPRGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W P + ALN +L+ + IL VD+ F ARFSA R YLYRI+TR+ Sbjct: 61 VAHVDLERRWPPETVRNALNFHLR-PAPMVILACEEVDETFDARFSAKARHYLYRIVTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PLAL++ RAW I LD E M+ A+HL+G HDFTTFR+ CQA SP+RT+D V S Sbjct: 120 SPLALDRDRAWHIGVPLDAEAMQEGARHLLGHHDFTTFRASQCQAKSPLRTLDTLTVRSE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS GSLKLVG+GKW + +AL+A+DR+ CG +AP GLY Sbjct: 180 GESVFIATSARSFLHNQVRSMAGSLKLVGEGKWQPERMREALEARDRRACGSVAPACGLY 239 Query: 241 FDSVEY 246 F +V+Y Sbjct: 240 FMTVDY 245 >gi|312109293|ref|YP_003987609.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1] gi|311214394|gb|ADP72998.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1] Length = 248 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 127/246 (51%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 R + Y+G+ +FG+Q Q ++QG +E+A+ + G+ + V +GRTD+GVHA QV Sbjct: 4 RIKCTLSYDGTHFFGYQIQPGKRTVQGELEQALEQIHKGKAIRVTASGRTDAGVHAYGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P KALNA L D I I + FHARFSA + Y Y++ Q Sbjct: 64 IHFDTFLSLSPEQWKKALNALL--PDDIVIKDAQEAAPSFHARFSATAKEYRYKVRIAQE 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P LD E M A + + G HDFT+F S +RTI D+ Sbjct: 122 RDVFLRHYCYHYPYPLDMEAMGRALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMTVRD 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+E R + FL+ +R VG++ VG GK + + AL A+DR+ G APP+GLY Sbjct: 182 DLLEFRFIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGKTAPPQGLYL 241 Query: 242 DSVEYS 247 V Y Sbjct: 242 WKVYYD 247 >gi|53722721|ref|YP_111706.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei K96243] gi|124382508|ref|YP_001025653.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10229] gi|126446203|ref|YP_001077728.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10247] gi|217422201|ref|ZP_03453704.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 576] gi|238563050|ref|ZP_04610365.1| tRNA pseudouridine synthase A [Burkholderia mallei GB8 horse 4] gi|251766902|ref|ZP_04819864.1| tRNA pseudouridine synthase A [Burkholderia mallei PRL-20] gi|254176501|ref|ZP_04883159.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 10399] gi|254184999|ref|ZP_04891588.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1655] gi|254201168|ref|ZP_04907533.1| tRNA pseudouridine synthase A [Burkholderia mallei FMH] gi|254205140|ref|ZP_04911493.1| tRNA pseudouridine synthase A [Burkholderia mallei JHU] gi|62901261|sp|Q63JL6|TRUA_BURPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228683|sp|A3MBU2|TRUA_BURM7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228684|sp|A2S134|TRUA_BURM9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52213135|emb|CAH39174.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei K96243] gi|126239057|gb|ABO02169.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10247] gi|147748780|gb|EDK55855.1| tRNA pseudouridine synthase A [Burkholderia mallei FMH] gi|147754726|gb|EDK61790.1| tRNA pseudouridine synthase A [Burkholderia mallei JHU] gi|160697543|gb|EDP87513.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 10399] gi|184215591|gb|EDU12572.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1655] gi|217394432|gb|EEC34451.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 576] gi|238521484|gb|EEP84935.1| tRNA pseudouridine synthase A [Burkholderia mallei GB8 horse 4] gi|243064541|gb|EES46727.1| tRNA pseudouridine synthase A [Burkholderia mallei PRL-20] gi|261826841|gb|ABM98766.2| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10229] Length = 271 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 135/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q ++E+++ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQSQPHGKTVQDALERSLAEFAQTSLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VVHFDTDLDRADFSWVRGTNAFL--PPTVAVQWAKPMPDTFHARFAAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA + LD + MR AA HLVG HDF+ FRS CQA SP++ + + Sbjct: 119 VRSPMLAGRAGWVHTPLDVDAMREAAAHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ S+ L + L+++DR P PEGLY Sbjct: 179 GDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLAEVLESRDRDCAAPTFMPEGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAHVGYP 245 >gi|160941032|ref|ZP_02088370.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC BAA-613] gi|158435981|gb|EDP13748.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC BAA-613] Length = 247 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q +I+ + +A+ + E + V GA RTDSGVHA Sbjct: 1 MKRIRLVVAYDGTQYHGWQIQPGAVTIESVLNEALTQLMREPIQVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + P +C ALN L + I + V +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTESQMPPDKICMALNQRL--PEDIRVQVSEEVPSDWHPRKCTCIKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +E+ + LD + M+ AA L G HDF +F S+ Q + +RT+ DV Sbjct: 119 INMPMERLYSHFCYYKLDVDRMQAAANMLAGEHDFKSFCSVRTQVTDTVRTVYRIDVTRN 178 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IRV FL+ +R G+L VG G + D+ L+A+DR+ GP AP GL Sbjct: 179 ADDIITIRVTGNGFLYNMVRIIAGTLMAVGTGHIQAEDMPSILEAKDRRAAGPTAPARGL 238 Query: 240 YFDSVEYS 247 ++Y Sbjct: 239 TLIEMKYE 246 >gi|186473191|ref|YP_001860533.1| tRNA pseudouridine synthase A [Burkholderia phymatum STM815] gi|238691329|sp|B2JQE6|TRUA_BURP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|184195523|gb|ACC73487.1| tRNA pseudouridine synthase A [Burkholderia phymatum STM815] Length = 267 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G ++Q +E+A+ + AGRTD+GVH L Q Sbjct: 1 MTRIALGIQYDGAAFCGWQSQPHGKTVQDELERALREFALTPLQTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRAEFSWVRGTNAFL--PSTVAVQWAKPMPDAFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA I LD + MR AA L+G HDF+ FRS CQ+ +P++ + D+ Sbjct: 119 VRSPMLASRAGWIHTPLDVDAMREAAACLIGEHDFSAFRSSECQSKTPVKHLYQIDIRPQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ + L + L +DR P P+GLY Sbjct: 179 GDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPAAWLSEVLHGRDRNRAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|54114177|gb|AAV29722.1| NT02FT0202 [synthetic construct] Length = 258 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI Y + I Y G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MINYLLQIGYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|295700767|ref|YP_003608660.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1002] gi|295439980|gb|ADG19149.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1002] Length = 270 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ T V AGRTD GVH L Q Sbjct: 1 MKRIALGVQYDGAAFAGWQSQPHGNTVQDELERALREFTRTPVQTVVAGRTDRGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + + NA+L TI + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRVDISWVRGPNAFL--PKTIGVQWAKPMPDDFHARFSAFERTYYYVLYVSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + LD + MR AA+HL+G HDF+ FRS CQ+ +P + + DV Sbjct: 119 VRSPMLTTRAGWVHTPLDVDAMRSAAEHLIGEHDFSAFRSSQCQSKTPFKHLYRIDVKRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + R A +FLH +R+ +G L +G G+ + + L ++ R P P+GLY Sbjct: 179 GNFVHFRFRANAFLHHMVRNVMGCLIEIGSGRRPAAWMADVLASRSRDCAAPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAQVGYP 245 >gi|103485743|ref|YP_615304.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256] gi|123253621|sp|Q1GWK1|TRUA_SPHAL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|98975820|gb|ABF51971.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256] Length = 246 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 124/247 (50%), Positives = 163/247 (65%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G Y GWQRQ +G S+Q +IE+AI T E V V AGRTD+GVHA+ Sbjct: 1 MTRFALTIEYDGRPYMGWQRQAHGPSVQQAIEEAIHRFTAEEVQVLSAGRTDAGVHAIAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +ALNA L+ I+++ +V +HARF+ I RSY YRI+ R+ Sbjct: 61 RAHVDIEKPLTPFKLTEALNAQLR-PAPIAVIGCEVVPDDWHARFACIGRSYEYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +KG AW + + LD + M AAQ L+G HDFTTFRS HCQ+ SP++T+D V+ Sbjct: 120 APLTWDKGLAWQVARPLDVDAMHEAAQQLIGLHDFTTFRSAHCQSQSPVKTLDRLTVSRH 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS VGSL LVG GKW++ DL+ AL+A DR+ G APP+GLY Sbjct: 180 GEEVIIEAAARSFLHHQVRSMVGSLALVGHGKWSARDLKAALEAADRQALGLNAPPDGLY 239 Query: 241 FDSVEYS 247 F Y Sbjct: 240 FVGAVYP 246 >gi|325578129|ref|ZP_08148264.1| tRNA pseudouridine synthase A [Haemophilus parainfluenzae ATCC 33392] gi|325159865|gb|EGC71994.1| tRNA pseudouridine synthase A [Haemophilus parainfluenzae ATCC 33392] Length = 264 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y GWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKQYCGWQRQEKVRSVQEELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D IS+ +VD +FHARFSA R Y Y + + Sbjct: 61 VHFETTAVRPEKAWAFGTNANL--PDDISVSWAKVVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V G Sbjct: 119 RSAILPEGITHCHLDLDEKKMHQAGQFLLGENDFSSFRAAQCQSNTPWRNVHHLNVVRKG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G ++ L+ +DRK P A PEGLY Sbjct: 179 QYVIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKLAAPTAKPEGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VNVIYP 244 >gi|229523210|ref|ZP_04412617.1| tRNA pseudouridine synthase A [Vibrio cholerae TM 11079-80] gi|229339573|gb|EEO04588.1| tRNA pseudouridine synthase A [Vibrio cholerae TM 11079-80] Length = 264 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EK++ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKSLSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A GLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGCGEQKPEWIQWLLAQKDRTLAAATAKAGGLYL 238 Query: 242 DSVEYS 247 SV+Y Sbjct: 239 VSVDYP 244 >gi|330820903|ref|YP_004349765.1| Pseudouridylate synthase [Burkholderia gladioli BSR3] gi|327372898|gb|AEA64253.1| Pseudouridylate synthase [Burkholderia gladioli BSR3] Length = 277 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q +E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDELERALKAFALVPLQTVVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRSDFSWVRGTNAFL--PSTVAVQWAKPMPDSFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD E MR AA+HL+G HDF++FRS CQ+ +P++ + D+ + G Sbjct: 119 RSPMLASRAGWVHTPLDIEAMREAARHLIGEHDFSSFRSSECQSKTPVKHLYQIDIRASG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + + + L A++R+ P P+GLY Sbjct: 179 SFIHFRFRANAFLHHMVRNLMGCLIAVGRGRYPADWMAEVLAARNRERAAPTFAPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|50121981|ref|YP_051148.1| tRNA pseudouridine synthase A [Pectobacterium atrosepticum SCRI1043] gi|62901300|sp|Q6D2N7|TRUA_ERWCT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49612507|emb|CAG75957.1| tRNA pseudouridine synthase A [Pectobacterium atrosepticum SCRI1043] Length = 283 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 24 KIALGIEYDGSQYYGWQRQIDVASVQACLEKALSKVADEPIEVLCAGRTDAGVHGTGQVV 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + V + FHARFSA R Y Y I + Sbjct: 84 HFTTQAIRKDAAWTMGVNANL--PPDIAVRWVKAVHEDFHARFSATARRYRYIIYNHRYR 141 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V GN Sbjct: 142 PAVLSHGMTHFYHPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRNVNHLKVTRHGN 201 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 202 YIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLAAKDRTLAGATARAEGLYLV 261 Query: 243 SVEYS 247 +V+Y Sbjct: 262 AVDYP 266 >gi|149377425|ref|ZP_01895168.1| tRNA pseudouridine synthase A [Marinobacter algicola DG893] gi|149358266|gb|EDM46745.1| tRNA pseudouridine synthase A [Marinobacter algicola DG893] Length = 298 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 126/246 (51%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + EY+G G+ GWQ QK S+QG + +A+ V V + AGRTD+GVHA Q+ Sbjct: 18 RVAIAFEYDGRGFHGWQYQKSGVRSVQGELTQAVSKVADHPVELVCAGRTDAGVHASYQI 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ P +N L I++ FHARFSA R Y Y I Sbjct: 78 AHFETPSVRNPRSWVMGINTSL--PQDIAVHWAGNGVDDFHARFSATYRRYRYVIYNHAV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G+ + LD M AAQ L G HDF++FR+ CQ+ SPIR ++ +V G Sbjct: 136 RPGILHGQVSWTFRPLDEALMHQAAQFLCGEHDFSSFRAAGCQSRSPIRFLEAIEVTRKG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V A +FLH +R+ G+L VG GK + + L+A+DR G APP GLY Sbjct: 196 DFVVIDVQANAFLHHMVRNIAGALMSVGTGKQRPEWIREILEARDRTVAGVTAPPHGLYL 255 Query: 242 DSVEYS 247 V Y Sbjct: 256 VDVGYP 261 >gi|328545265|ref|YP_004305374.1| tRNA pseudouridine synthase A [polymorphum gilvum SL003B-26A1] gi|326415007|gb|ADZ72070.1| tRNA pseudouridine synthase A [Polymorphum gilvum SL003B-26A1] Length = 276 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 163/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+Q IE+A+ GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGRPFCGWQRQANGPSVQAVIERAVKAFCGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W + ALN + + D +++L + F +RFSAIRR+Y YRI+ R Sbjct: 61 VAHVDLSRDWPADTVLGALNFHCQ-PDPVALLACEKMHAGFDSRFSAIRRAYRYRIVNRV 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL E+G AW + LD E M AAQ VG HDFTTFR CQA SP++T++ F V Sbjct: 120 PPLTYERGLAWHVKPPLDAEAMHAAAQVFVGHHDFTTFRHARCQAKSPVKTLEFFAVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ +RSFLH Q+RS VG+L+LVG+G+W + + +AL A++RK CGP+APP+GLY Sbjct: 180 GDVVVAECASRSFLHNQVRSMVGTLRLVGEGRWDAQTVREALAARNRKACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|300691102|ref|YP_003752097.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum PSI07] gi|299078162|emb|CBJ50805.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum PSI07] Length = 274 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 92/251 (36%), Positives = 138/251 (54%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFAGVELPTIVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 VVHLDTDLVRDPFSWVRGTNAFL--PPTVAVRWAQEVPEDFHARFSAHRRTYYYALVSGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L G+A + +SLD M+ AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLGGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + +R+ +FLH +R+ +G L +G GK + + L A+DRK P P Sbjct: 179 ARGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPVAWMGEVLAARDRKVAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 239 DGLYLAEVGYP 249 >gi|156502494|ref|YP_001428559.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953826|ref|ZP_06558447.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica URFT1] gi|295312837|ref|ZP_06803569.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica URFT1] gi|166228698|sp|A7NCA0|TRUA_FRATF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156253097|gb|ABU61603.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FTNF002-00] Length = 258 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + +NA L I IL + V+ F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNAYRPLSAWQRGVNALL--PQDIKILAVQQVNNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|163750187|ref|ZP_02157429.1| tRNA pseudouridine synthase A [Shewanella benthica KT99] gi|161330043|gb|EDQ01027.1| tRNA pseudouridine synthase A [Shewanella benthica KT99] Length = 261 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ ++Q +E+A+ V + + VH AGRTDSGVH QV Sbjct: 1 MRVALGIEYDGSKYYGWQRQLEVDTVQAQLERALSKVANQPISVHCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + +VD FHARFSA R Y Y I Sbjct: 61 VHFETTAIRKESAWTLGVNVNL--PDDIAVKWVKLVDDDFHARFSATARRYRYIIYNYHL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD + M AAQH VG HDFT+FR++HCQ+ +P R + +V G Sbjct: 119 RPGILRSGVSHYRGQLDEDKMHHAAQHFVGEHDFTSFRALHCQSKTPFRHVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G + L +DR + P A P GLY Sbjct: 179 MYLCVDIKANAFLHHMVRNIVGSLIEIGLGHQNEDWIVSLLALKDRSKAAPTAKPNGLYM 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|90419798|ref|ZP_01227707.1| tRNA pseudouridine synthase A [Aurantimonas manganoxydans SI85-9A1] gi|90335839|gb|EAS49587.1| tRNA pseudouridine synthase A [Aurantimonas manganoxydans SI85-9A1] Length = 259 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 136/247 (55%), Positives = 166/247 (67%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G+ Y GWQRQK S Q IE A+ TGE + AGRTD+GVHA Q Sbjct: 1 MPRFKLTIEYDGTPYCGWQRQKTDLSAQEVIETAVEGFTGEAATLFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P + ALNA+L+ ++IL+ V F ARFSA +R YLYRI R+ Sbjct: 61 VAHVDLRRDWEPDTVRDALNAHLR-DAPVAILSAERVADDFDARFSARKRFYLYRIFNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL GR W + K LD + M AAQ LVG HDF TFRS HCQA +PIRT++ DV Sbjct: 120 APTALLIGRVWWVSKPLDVDAMHAAAQRLVGTHDFDTFRSAHCQAKNPIRTLEQLDVVRG 179 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +A+SFLH QIRSF GSLKLVG+G W++ DL AL+A+DRK CGP+APP+GL Sbjct: 180 PGEEIHIHAMAQSFLHNQIRSFAGSLKLVGEGHWSAADLVAALEARDRKRCGPVAPPDGL 239 Query: 240 YFDSVEY 246 Y VEY Sbjct: 240 YLTRVEY 246 >gi|167759245|ref|ZP_02431372.1| hypothetical protein CLOSCI_01592 [Clostridium scindens ATCC 35704] gi|167663119|gb|EDS07249.1| hypothetical protein CLOSCI_01592 [Clostridium scindens ATCC 35704] Length = 248 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +++ + K + +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTIAYDGTDYCGWQIQPNGITVEEILNKKLKKLTGEDIHVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF-SAIRRSYLYRIITR 119 VA FD + ALN L D I I++ V +H R+ I ++Y Y I Sbjct: 61 VAVFDTESSIPAERMAYALNQRL--PDDIVIVSSKEVPLDWHPRYQDEILKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L++ + + ++ E MR A +L+G HDF +F ++ +RT+ + Sbjct: 119 PVQNPLKRRYSAFVSFPMNVEKMREGAAYLLGEHDFVSFCNVRTSVEDTVRTVKELMIEQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I IR+ FL+ +R G+L VG G + T +++ L+A++R + G APPEGL Sbjct: 179 EGPDITIRITGNGFLYNMVRIIAGTLIRVGRGFYEPTKVKEILEARERTQAGVTAPPEGL 238 Query: 240 YFDSVEYS 247 +EY Sbjct: 239 TLVCIEYD 246 >gi|266620223|ref|ZP_06113158.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] gi|288868186|gb|EFD00485.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] Length = 354 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 91/241 (37%), Positives = 126/241 (52%), Gaps = 2/241 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +I+ + +A+ + E V V GA RTDSGVHA Sbjct: 1 MKRIKLIVAYDGTNYCGWQIQNNGRTIEEVLNEALTALLHEKVAVIGASRTDSGVHAEGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN L + I +L V +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTENRMPADKICFALNQRL--PEDIRVLKSEEVPLTWHPRKCNCVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + A+ LD E M+ AA++LVG HDFT+F + QA +RTI DV Sbjct: 119 IEVPTLRLYAYFCYYPLDVEKMKQAAEYLVGEHDFTSFCAPRTQAEDMVRTIYSLDVGKT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IRV FL+ +R G+L VG G W +E+ L A+ R GP A GL Sbjct: 179 GDMITIRVSGSGFLYNMVRIIAGTLMKVGLGVWPPEHVEEILDARSRAAAGPTAVARGLT 238 Query: 241 F 241 Sbjct: 239 L 239 >gi|138893815|ref|YP_001124268.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans NG80-2] gi|196250992|ref|ZP_03149674.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16] gi|166228701|sp|A4IJL9|TRUA_GEOTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134265328|gb|ABO65523.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans NG80-2] gi|196209464|gb|EDY04241.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16] Length = 253 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R ++ Y+G+ + G+Q Q ++QG E + + G+ V + +GRTD+GVHA Q Sbjct: 3 RRIKCVVAYDGTYFSGYQVQPGKRTVQGEFEGVLKRMHKGDDVRITASGRTDAGVHAYGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P KALNA L D I++ ++ D FHARFSA + Y Y + T Sbjct: 63 VIHFDTPLALSPEQWKKALNAQL--PDDIAVRSVDEADSTFHARFSAKAKEYRYNVWTAA 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P L + M A L G HDFT+F S +RTI ++ Sbjct: 121 ERDVFRRHYCAWHPYPLRVDAMSEALGLLKGTHDFTSFCSAKTVIEDRVRTIYQAEMEVD 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +++ R V FL+ +R VG++ VG GK D+E L A+DR+ GP AP EGLY Sbjct: 181 GPMLQFRFVGSGFLYNMVRIIVGTVLEVGQGKRPPDDIEALLAAKDRRLAGPTAPAEGLY 240 Query: 241 FDSVEYS 247 V Y Sbjct: 241 LWRVYYD 247 >gi|260558318|ref|ZP_05830514.1| tRNA pseudouridine synthase [Enterococcus faecium C68] gi|261207023|ref|ZP_05921712.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289565342|ref|ZP_06445792.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|294615363|ref|ZP_06695236.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|294618289|ref|ZP_06697870.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|260075492|gb|EEW63798.1| tRNA pseudouridine synthase [Enterococcus faecium C68] gi|260078651|gb|EEW66353.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289162832|gb|EFD10682.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|291591737|gb|EFF23373.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|291595383|gb|EFF26695.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] Length = 248 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + A P LD E ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437] Length = 258 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + G+QRQ ++QG++E+ + VTGE + V GAGRTD+GVHAL Q Sbjct: 1 MGKIKLTVAYDGTDFSGFQRQPGKRTVQGTLEETLTRVTGETISVTGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + LNA L + + V ++FHAR+ A + Y Y + T Sbjct: 61 VIHFETSVPIPTERWVRLLNASL--PRDLLVTQAKEVPREFHARYDACWKHYRYTLDTCP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P + P L + M+ AA+HL G HDFT+F + Q R++ H +V Sbjct: 119 IPDLFRRRYQTHYPHPLSRDRMQRAARHLTGTHDFTSFSAARAQVKDRRRSLYHCEVKEV 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ I VV FL+ +R G+L +G GK ++ L+A+DR G PPEGL Sbjct: 179 NPGVLSIEVVGDGFLYHMVRILTGTLVEIGAGKIPPDEIRGILKAKDRSAAGKTFPPEGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 VMVEVGY 245 >gi|33152228|ref|NP_873581.1| tRNA pseudouridine synthase A [Haemophilus ducreyi 35000HP] gi|42559759|sp|Q7U335|TRUA_HAEDU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33148450|gb|AAP95970.1| tRNA pseudouridine synthase A [Haemophilus ducreyi 35000HP] Length = 261 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q ++E+A+ VT + V AGRTDSGVH QV Sbjct: 1 MKVALGIEYDGSNYFGWQRQAEVVSVQQTLEEALSKVTNTTIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E C NA+L + I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFDTEVERPLASWCFGTNAHLA--NDIAVKWAVKVAEDFHARFSATARRYRYIIFNSKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G DF++FR+ CQ+ +P R I H +V G Sbjct: 119 RTAILPKGVAHYHYPLDAQKMHQAGQYLLGEQDFSSFRAAKCQSHTPWRNIHHLNVVRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VGSL VG G+ ++ L+ ++R+ P EGLY Sbjct: 179 NYVIVDIQANAFVHHMVRNIVGSLLEVGQGRQPIEWIKWLLEQKNRQLAAPTTKAEGLYL 238 Query: 242 DSVEYS 247 +VEY Sbjct: 239 VNVEYP 244 >gi|69247200|ref|ZP_00604262.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257878755|ref|ZP_05658408.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257881397|ref|ZP_05661050.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257890614|ref|ZP_05670267.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|258615179|ref|ZP_05712949.1| tRNA pseudouridine synthase A [Enterococcus faecium DO] gi|293562977|ref|ZP_06677444.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|314937639|ref|ZP_07844965.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|314942862|ref|ZP_07849675.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|314948002|ref|ZP_07851406.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] gi|314950919|ref|ZP_07853988.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|314991433|ref|ZP_07856910.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|314995046|ref|ZP_07860166.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|68194965|gb|EAN09433.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257812983|gb|EEV41741.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257817055|gb|EEV44383.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257826974|gb|EEV53600.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|291605103|gb|EFF34570.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|313590772|gb|EFR69617.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|313593913|gb|EFR72758.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|313596928|gb|EFR75773.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|313598334|gb|EFR77179.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|313643016|gb|EFS07596.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|313645600|gb|EFS10180.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] Length = 248 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + A P LD E ++ A L+G HDFT+F + IRTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKIRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|239948364|ref|ZP_04700117.1| tRNA pseudouridine synthase A [Rickettsia endosymbiont of Ixodes scapularis] gi|239922640|gb|EER22664.1| tRNA pseudouridine synthase A [Rickettsia endosymbiont of Ixodes scapularis] Length = 245 Score = 301 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 108/246 (43%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQ+Q S+Q +E+AI+ ++GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQKQAGVMSVQQILEEAIYKLSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIIAAIN-YFARPYAVGVWNCELAPNNFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDILAMQKAASYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKAEY 245 >gi|227550751|ref|ZP_03980800.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257887991|ref|ZP_05667644.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257893205|ref|ZP_05672858.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257896390|ref|ZP_05676043.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|293379476|ref|ZP_06625620.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] gi|293570714|ref|ZP_06681764.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|227180069|gb|EEI61041.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257824045|gb|EEV50977.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257829584|gb|EEV56191.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257832955|gb|EEV59376.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|291609186|gb|EFF38458.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|292641999|gb|EFF60165.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] Length = 248 Score = 301 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV ++FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEEFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + A P LD E ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|89100313|ref|ZP_01173178.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911] gi|89084934|gb|EAR64070.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911] Length = 245 Score = 301 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ I Y+GS + G+Q Q ++Q +E+A+ + G V + +GRTD+GVHA Sbjct: 1 MQRFKCKIAYDGSQFSGYQVQPGKRTVQLEVERALAKIHKGNPVKIFASGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L I++ + + FHARF A + Y Y I Sbjct: 61 QVIHFDSPLAIPEDRWVTALNSLL--PKDIAVESTEKAAEGFHARFDACGKEYRYFIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + E+ ++ P LD MR AA+HL+G HDF++F + +R I V Sbjct: 119 KIRSPFERHYSYHYPHPLDIRAMREAAEHLLGTHDFSSFCASRTDVEDKVREIRKVHVEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E+ FL+ +R G+L G G + + +DR G AP EGL Sbjct: 179 AGEMLELHFTGSGFLYNMVRILTGTLLEAGAGTRDPGSFPEVISGRDRSLAGKTAPAEGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWKVFY 245 >gi|315497922|ref|YP_004086726.1| tRNA pseudouridine synthase a [Asticcacaulis excentricus CB 48] gi|315415934|gb|ADU12575.1| tRNA pseudouridine synthase A [Asticcacaulis excentricus CB 48] Length = 257 Score = 301 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 124/247 (50%), Positives = 166/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++EY+G Y G+Q Q N ++QGS+E+AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYSCLVEYDGRPYKGFQAQDNLPTVQGSLERAILGFSGETLRITAAGRTDTGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FDL + + P ++ A+NAYL I + I++ +IVD F ARFSA R YLYRI+ R+ Sbjct: 61 VITFDLPKTYRPDVVRDAMNAYL-IPEPIAVREAAIVDDDFSARFSATGRMYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE+GR W + K LD E M AAQHL+GRHDFTTFR CQA+SPI+T+D V Sbjct: 120 APPALEQGRVWHVKKPLDAEVMADAAQHLIGRHDFTTFRDTECQAASPIKTLDIARVKRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + +RSFLH Q+RS G+L G G+WT+ D++ AL+A+DR+ CG +APPEGL Sbjct: 180 GEEIHLVFASRSFLHRQVRSMTGTLVEAGIGRWTAADVKAALEARDRRACGQVAPPEGLC 239 Query: 241 FDSVEYS 247 V + Sbjct: 240 LTHVTFE 246 >gi|326792573|ref|YP_004310394.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326543337|gb|ADZ85196.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 245 Score = 301 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +I+ Y+G+ Y G+ +Q N ++IQG+++ AI + V GAGRTD GVHA Q Sbjct: 1 MKRFKLIVAYDGTNYNGFAKQPNATTIQGTLDVAIAKIVQHEVRTLGAGRTDRGVHAFAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 FD + L KA+N+ L IS+ ++ V + FH RF A R++Y Y+I+ + Sbjct: 61 CCVFDSDTKIPADRLAKAINSQL--PADISVKSVEEVSEDFHPRFGAKRKTYRYQILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L P LD E M+ AA ++G HDF F + +R I DV Sbjct: 119 IRDPFLYKYALLYPYELDVERMQEAANEMIGEHDFACFCAAGSTVKDTVRIIYSIDVKKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ I V FL+ +R +G+L V + K T ++ +++++R+ GP PP+GL Sbjct: 179 GDLVSIDVCGNGFLYNMVRIIIGTLLDVNENKITKDSIKTIIESKNRELAGPTVPPQGLT 238 Query: 241 FDSVEYS 247 ++ Y+ Sbjct: 239 MLNIVYN 245 >gi|56418673|ref|YP_145991.1| tRNA pseudouridine synthase A [Geobacillus kaustophilus HTA426] gi|62901182|sp|Q5L3Q7|TRUA_GEOKA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56378515|dbj|BAD74423.1| pseudouridylate synthaseI [Geobacillus kaustophilus HTA426] Length = 258 Score = 301 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R II Y+G+ + G+Q Q ++QG E+ + + G V V +GRTD+GVHA Q Sbjct: 3 QRIKCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTKVRVAASGRTDAGVHAYGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD KALNA L D I + + D FHARFSA + Y Y++ T Sbjct: 63 VIHFDTPLSLSSEQWKKALNAQL--PDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAA 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P SL M A + L G HDFT+F S +RT+ +V + Sbjct: 121 ERDVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTSIEDRVRTMYRAEVKAD 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++E R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EGLY Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDRRLAGPTAPAEGLY 240 Query: 241 FDSVEYS 247 V Y Sbjct: 241 LWRVYYE 247 >gi|325567346|ref|ZP_08144013.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] gi|325158779|gb|EGC70925.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] Length = 248 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + +HG+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIHGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ ++ IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKSVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P LD E ++ A +G HDFT+F + RTI V Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRIAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLVHVAYE 248 >gi|237732351|ref|ZP_04562832.1| tRNA pseudouridine synthase A [Citrobacter sp. 30_2] gi|226907890|gb|EEH93808.1| tRNA pseudouridine synthase A [Citrobacter sp. 30_2] Length = 270 Score = 301 bits (771), Expect = 6e-80, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANERINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V FG Sbjct: 129 PAVLGKGVTHYYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHIKVERFGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAARDRTLAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|257885664|ref|ZP_05665317.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|293553909|ref|ZP_06674515.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] gi|257821520|gb|EEV48650.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|291601961|gb|EFF32207.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] Length = 248 Score = 301 bits (771), Expect = 6e-80, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + A P LD E ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|227114786|ref|ZP_03828442.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 283 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 24 KIALGIEYDGSLYYGWQRQIDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQVV 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD+ FHARFSA R Y Y I + Sbjct: 84 HFTTHAIRKDAAWTMGVNANL--PPDIAVRWVKTVDEDFHARFSATARRYRYVIYNHRYR 141 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V G+ Sbjct: 142 PAVLSRGMTHFYHPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRYVNHLKVTRHGD 201 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 202 YIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLAAKDRTLAGATARAEGLYLV 261 Query: 243 SVEYS 247 +V+Y Sbjct: 262 AVDYP 266 >gi|212637986|ref|YP_002314506.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1] gi|226708641|sp|B7GJ99|TRUA_ANOFW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212559466|gb|ACJ32521.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1] Length = 246 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R I Y+G+ + G+Q Q+ ++QG +E+A+ ++ G+ V V+ +GRTD+ VHA Sbjct: 1 MRRIKCTIAYDGTNFAGYQIQQQKRTVQGELERALSIIHKGQFVRVYASGRTDATVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD KALNA L D + + S V FHARFS ++ Y YR+ Sbjct: 61 QVIHFDTPLTIPDERWPKALNALL--PDDVIVKEASEVPSSFHARFSVKKKEYRYRVWIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P + M A ++L+G HDFT+F S + +RTI +V Sbjct: 119 EK-NVFLRHYVYHHPYDVSVPAMNEALRYLIGTHDFTSFCSAKTEVDDKVRTIYEAEVVQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + R+V FL+ +R VG++ VG G+ + +++ L+ ++R G AP GL Sbjct: 178 EGEELIFRLVGNGFLYNMVRIIVGTVLEVGRGERCAEEIKTILEQKNRSVAGKTAPGHGL 237 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 238 YLWHVSYD 245 >gi|114769437|ref|ZP_01447063.1| tRNA pseudouridine synthase A [alpha proteobacterium HTCC2255] gi|114550354|gb|EAU53235.1| tRNA pseudouridine synthase A [alpha proteobacterium HTCC2255] Length = 255 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 117/251 (46%), Positives = 161/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ++ S+Q +IE AI + E + GAGRTD+GVHA Q Sbjct: 1 MPRYALKVEYDGKPYHGWQRQRDVPSVQQTIEIAISKIAPEKPEIQGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + W L +A+N +L+ + ISI SIV FHARFSA R Y++R+++R+ Sbjct: 61 IAHFDLNKPWDSFRLSEAINYHLR-PEPISITKCSIVADDFHARFSAKERRYVFRLLSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 AP ++ G W I LD E M+ A++LVG+HDFTTFRS CQA SPI+++ + Sbjct: 120 APAIVDVGWVWQIQHDLDLELMQEGAKYLVGKHDFTTFRSSICQAQSPIKSLKEISIKEI 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G E ++ARSFLH Q+RSF+G+L+ VG G W + +AL A+DR +CGP+ PP Sbjct: 180 SLEHGKEFEFTIIARSFLHNQVRSFIGTLERVGSGSWDPERVHEALIAKDRSKCGPVCPP 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLAQVSYD 250 >gi|225377724|ref|ZP_03754945.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM 16841] gi|225210401|gb|EEG92755.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM 16841] Length = 245 Score = 300 bits (770), Expect = 7e-80, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQ Q + G +IQG IE + + G V V G+GRTD+GVHA Sbjct: 1 MNNYKITIQYDGTRYKGWQGQNSTGLTIQGKIEAVLGQMAGHAVEVIGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + LN YL D I+++ + VD++FH+R++A +++Y Y I Sbjct: 61 QVANFHIEEHFTEGKILSYLNHYL--PDDIAVIAVEQVDERFHSRYAAKKKTYRYHIHMG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + E+ + K+LD E M+ AA +L+G HDFT+F + +RTI + Sbjct: 119 EISDVFERKYEYQYEKTLDVERMKEAASYLIGTHDFTSFCGNKKMKKTAVRTIYEINFTK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + I FL +R G+L VGDG+ +L + L++++R+ G AP GL Sbjct: 179 KGNDLWIDYRGNGFLQNMVRILTGTLIEVGDGRRAPEELPQILESKNRENAGYTAPACGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 MLMEVHY 245 >gi|167573521|ref|ZP_02366395.1| tRNA pseudouridine synthase A [Burkholderia oklahomensis C6786] Length = 270 Score = 300 bits (770), Expect = 7e-80, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA+HLVG HDF+ FRS CQA SPI+ + + G Sbjct: 119 RSPMLAGRAGWVHMPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPIKHLYQISIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L ++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLDSRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|323706484|ref|ZP_08118045.1| tRNA pseudouridine synthase A [Thermoanaerobacterium xylanolyticum LX-11] gi|323534204|gb|EGB23994.1| tRNA pseudouridine synthase A [Thermoanaerobacterium xylanolyticum LX-11] Length = 239 Score = 300 bits (770), Expect = 7e-80, Method: Composition-based stats. Identities = 86/241 (35%), Positives = 127/241 (52%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY+G+ Y GWQ QKN ++Q I KAI +T E V + G+ RTD+GVHAL QVA+F Sbjct: 1 MVIEYDGTNYHGWQIQKNAVTVQEVITKAIKKITSEDVNLIGSSRTDAGVHALNQVANFI 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALN+ L I I N D FH+R+SA + Y Y I R+ + Sbjct: 61 SNCNIPLSKMPNALNSVL--PKDIVIKNAYEADMDFHSRYSAKGKRYKYIIYNRKFNSPV 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + +W I LD + M + +L G HDF+ F+S IRT+ + +E Sbjct: 119 YRNYSWHISDELDLDKMIESLTYLKGTHDFSAFKSSGSSVKDSIRTVRDISLRKNDFNVE 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + A FL+ +R VG++ VG GK +++ L+++DR G APP+GL+ + Sbjct: 179 FEIEADGFLYNMVRIIVGTIVDVGIGKINPIHVKEILESKDRCMAGKTAPPQGLFLTKIY 238 Query: 246 Y 246 Y Sbjct: 239 Y 239 >gi|257876163|ref|ZP_05655816.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|257810329|gb|EEV39149.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] Length = 248 Score = 300 bits (770), Expect = 8e-80, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + +HG+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIHGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ + IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKAVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P LD E ++ A +G HDFT+F + RTI V Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLVHVAYE 248 >gi|238925343|ref|YP_002938860.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] gi|238877019|gb|ACR76726.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] Length = 252 Score = 300 bits (770), Expect = 8e-80, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + + + + E + V GA RTD+GVH+L V Sbjct: 9 MRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLKEDIKVTGASRTDAGVHSLGNV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD + ALN L + I +++ V FH RFS R++Y YRI+ + Sbjct: 69 CMFDTNTRMPAEKISYALNQKL--PEDIVVVDSCEVSDDFHPRFSKSRKTYEYRILNARF 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M AA++L+G HDF +F S + QA + +RTI V+ G Sbjct: 127 RNPTRRLDTYFYHYPLDTEKMSEAAKYLIGEHDFASFCSANSQAQTTVRTIYDCTVSKAG 186 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L +G + ++ + DR GP AP GL Sbjct: 187 DIITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIATTDRAAAGPTAPAHGLTM 246 Query: 242 DSVEYS 247 ++Y Sbjct: 247 IGLKYE 252 >gi|257866559|ref|ZP_05646212.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257872925|ref|ZP_05652578.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257800517|gb|EEV29545.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257807089|gb|EEV35911.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] Length = 248 Score = 300 bits (770), Expect = 8e-80, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + + G+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIQGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ ++ IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKSVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P LD E ++ A +G HDFT+F + RTI V Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLVHVAYE 248 >gi|145641169|ref|ZP_01796749.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] gi|145274006|gb|EDK13872.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.4-21] Length = 269 Score = 300 bits (770), Expect = 8e-80, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNVIRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|227520026|ref|ZP_03950075.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] gi|227072574|gb|EEI10537.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] Length = 249 Score = 300 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|56551706|ref|YP_162545.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ZM4] gi|241762299|ref|ZP_04760380.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752717|ref|YP_003225610.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59803041|sp|Q9REQ0|TRUA_ZYMMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56543280|gb|AAV89434.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ZM4] gi|241373202|gb|EER62832.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552080|gb|ACV75026.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 245 Score = 300 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 133/246 (54%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +E++G + GWQRQK+G++IQGSIE+A + G+ V AGRTD+GVH L Sbjct: 1 MNRYRLTVEFDGRNFMGWQRQKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ R++ P L +ALNA LK I+IL+ VD ++HARFS I R YLYRII R+ Sbjct: 61 TAHIDVARDFTPFRLMEALNARLK-PRPIAILSCEQVDPEWHARFSCIGRRYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL LE GRAW + K LD E M IAA+ L+G HDFTTFRS+HCQ+ SP++T+DH DV Sbjct: 120 PPLTLEAGRAWHVIKPLDAETMDIAAKRLIGLHDFTTFRSVHCQSKSPVKTLDHLDVRRI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS VG L LVG G+WT+ D+ AL+A++R G APP+GLY Sbjct: 180 GDQIEITAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTQAIY 245 >gi|153001275|ref|YP_001366956.1| tRNA pseudouridine synthase A [Shewanella baltica OS185] gi|166229834|sp|A6WQ04|TRUA_SHEB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151365893|gb|ABS08893.1| tRNA pseudouridine synthase A [Shewanella baltica OS185] Length = 261 Score = 300 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+QG +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQGQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|270157075|ref|ZP_06185732.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968] gi|289164512|ref|YP_003454650.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150] gi|269989100|gb|EEZ95354.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968] gi|288857685|emb|CBJ11528.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150] Length = 262 Score = 300 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q ++Q ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVADLPISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ +N++L I + + ++FHAR+SA R Y Y I Sbjct: 61 IHFDSEKQRSIRAWIHGVNSFL--PKDICVKWGKELSEEFHARYSATARRYRYVIYNSAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + + LD M AAQ L+G +DFT+FRS+ CQ+++P+R + VN G Sbjct: 119 RPALLRSNVTWQYRQLDHRLMHQAAQVLLGENDFTSFRSVECQSNTPMRNVYKLQVNRMG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A +FLH +R+ G L VG GK +E+ LQA+DR+ AP GLY Sbjct: 179 DLVIIDITANAFLHHMVRNIAGVLIAVGSGKRPVFWVEEVLQAKDRRLGAETAPAYGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VQVNYP 244 >gi|239623391|ref|ZP_04666422.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522357|gb|EEQ62223.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 247 Score = 300 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 131/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q +I+ + +A+ + GE V V GA RTDSGVHA Sbjct: 1 MKRVRLVVAYDGTHYHGWQIQPGKVTIESRLNEALTSLLGEPVQVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN L + I + + VD +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTSHRMPADRICMALNQRL--PEDIRVQSSEEVDPDWHPRKCRCVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 + +++ + +LD E M+ AA LVG HDF +F S+ Q + +RTI +V Sbjct: 119 IEMPMQRFYSHFCYFNLDLEKMQKAAGLLVGEHDFKSFCSVRTQVTDTVRTIYSIEVKRD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IRV FL+ +R G+L VG G+ D+ L+A+DR+ GP AP GL Sbjct: 179 EEDMIGIRVTGNGFLYNMVRIIAGTLMAVGMGQIAPEDMGAILEARDRRAAGPTAPARGL 238 Query: 240 YFDSVEYS 247 +EY Sbjct: 239 TLIQMEYD 246 >gi|239825725|ref|YP_002948349.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70] gi|259550397|sp|C5D3U9|TRUA_GEOSW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239806018|gb|ACS23083.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70] Length = 248 Score = 300 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 R + Y+G+ +FG+Q Q ++QG +E+ + + G+ + V +GRTD+GVHA QV Sbjct: 4 RIKCTLSYDGTHFFGYQIQPGKRTVQGELERVLEQMHKGKAIRVTASGRTDAGVHAYGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P KALNA L D I I ++ D FHARFSA + Y Y++ Q Sbjct: 64 IHFDTFLSLSPDQWKKALNAQL--PDDIVIKDVQEADPSFHARFSAKAKEYRYKVRIAQE 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P LD E MR A + + G HDFT+F S +RTI D+ Sbjct: 122 RDVFLRNYCYHYPYPLDMEAMRHALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMAMHD 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+E + FL+ +R VG++ VG GK + + A +A+DR+ G APP+GLY Sbjct: 182 DLLEFCFIGNGFLYNMVRIIVGTILEVGQGKRSIDSISHAFEAKDRQFAGKTAPPQGLYL 241 Query: 242 DSVEYS 247 V Y Sbjct: 242 WKVYYD 247 >gi|315172660|gb|EFU16677.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346] Length = 249 Score = 300 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NEKGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|295401888|ref|ZP_06811851.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius C56-YS93] gi|294976018|gb|EFG51633.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius C56-YS93] Length = 248 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 126/246 (51%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 R + Y+G+ +FG+Q Q ++QG +E+A+ + G+ + V +GRTD+GVHA QV Sbjct: 4 RIKCTLSYDGTHFFGYQIQPGKRTVQGELEQALEQIHKGKAIRVTASGRTDAGVHAYGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P KALNA L D I I + FHARFSA + Y Y++ Q Sbjct: 64 IHFDTFLSLSPEQWKKALNALL--PDDIVIKDAQEAAPSFHARFSATAKEYRYKVRIAQE 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P LD E M A + + G HDFT+F S +RTI D+ Sbjct: 122 RDVFLRHYCYHYPYPLDMEAMGRALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMTVRD 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+E + FL+ +R VG++ VG GK + + AL A+DR+ G APP+GLY Sbjct: 182 DLLEFCFIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGKTAPPQGLYL 241 Query: 242 DSVEYS 247 V Y Sbjct: 242 WKVYYD 247 >gi|227555887|ref|ZP_03985934.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|256964165|ref|ZP_05568336.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|257418666|ref|ZP_05595660.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|307274205|ref|ZP_07555413.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|227175054|gb|EEI56026.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|256954661|gb|EEU71293.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|257160494|gb|EEU90454.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|306509167|gb|EFM78229.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|315573548|gb|EFU85739.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B] gi|315582104|gb|EFU94295.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A] Length = 249 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|254463862|ref|ZP_05077273.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium Y4I] gi|206684770|gb|EDZ45252.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium Y4I] Length = 255 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 118/251 (47%), Positives = 162/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDLPSVQGAIEAALARLEPGEHTIAAAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++W P L +ALN +LK D ++I+ + VD +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMAKDWDPFRLSEALNYHLK-PDPVAIVGCARVDDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G+ W + LD + M+ AA +L+G HDFTTFRS CQA SP++T+D V Sbjct: 120 APATHDAGQVWQLSHELDADAMQEAANYLIGNHDFTTFRSSICQAQSPVKTLDELTVERV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWDPADVKAALEARDRAACGPVCPG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLARVGYP 250 >gi|259417872|ref|ZP_05741791.1| tRNA pseudouridine synthase A [Silicibacter sp. TrichCH4B] gi|259346778|gb|EEW58592.1| tRNA pseudouridine synthase A [Silicibacter sp. TrichCH4B] Length = 278 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 121/251 (48%), Positives = 159/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 20 MPRIALKVEYHGKPFAGWQRQKDQPSVQGAIEAALAKLEPGEHTIAAAGRTDTGVHGLGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK D I+I++ + VD +HARFSAI R YL+RI+ R+ Sbjct: 80 VAHCDLQKDWDPFRLSEALNYHLK-PDPIAIVDAARVDDDWHARFSAIERQYLFRILMRR 138 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G+ W I LD E M+ A L+G HDFTTFRS CQA+SP++T+D V Sbjct: 139 APATHDAGQVWQINHRLDVEAMQAGADMLLGNHDFTTFRSSICQAASPVKTLDELRVEQV 198 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 199 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALAAKDRAACGPVCPG 258 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 259 HGLYLARVGYP 269 >gi|240143728|ref|ZP_04742329.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|257204287|gb|EEV02572.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|291537295|emb|CBL10407.1| pseudouridylate synthase I [Roseburia intestinalis M50/1] gi|291539242|emb|CBL12353.1| pseudouridylate synthase I [Roseburia intestinalis XB6B4] Length = 251 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y MI++Y+G+ Y GWQ +IQG ++ + + G V V G+GRTD+GVHA Q Sbjct: 1 MANYKMILQYDGTRYRGWQVLPAELTIQGKLQDVLSKMAGYQVEVTGSGRTDAGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F L EW + LN YL + I++ + VD++FH+R+ A+ ++YLYRI T + Sbjct: 61 TANFHLREEWDEDKILFYLNQYL--PEDIAVCEVKRVDERFHSRYQAVEKTYLYRIHTGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E+ + + LD MR AA++L G HDF +F S +RTI + Sbjct: 119 IPEVFERRYVYDYTEPLDVNRMRKAAEYLCGTHDFKSFCGNKKMKKSTVRTISRIQIKEL 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I FL +R G+L +GDG+ T D+ + L+A++R+ G AP GL Sbjct: 179 PGEIQIYYTGNGFLQNMVRILTGTLIEIGDGRRTPEDVSEILEAKNRERAGYTAPACGLT 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLEVIY 244 >gi|83748092|ref|ZP_00945121.1| tRNA pseudouridine synthase A [Ralstonia solanacearum UW551] gi|207742812|ref|YP_002259204.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum IPO1609] gi|83725278|gb|EAP72427.1| tRNA pseudouridine synthase A [Ralstonia solanacearum UW551] gi|206594206|emb|CAQ61133.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum IPO1609] Length = 274 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 138/251 (54%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + H D P + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 IVHLDTDLVREPFSWVRGTNAFL--PSTVAVRWAQAVPEDFHARFSAHRRTYYYALVSGP 118 Query: 121 APLALEKGRAWLIPKS----LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L G+A + LD M+ AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRSPLLGGKAGYVMLPPGEWLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTLYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 239 DGLYLAEVGYP 249 >gi|309973317|gb|ADO96518.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2846] Length = 269 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSAI R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSAIARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLFGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|257084178|ref|ZP_05578539.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] gi|256992208|gb|EEU79510.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] Length = 249 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|238024257|ref|YP_002908489.1| tRNA pseudouridine synthase A [Burkholderia glumae BGR1] gi|237878922|gb|ACR31254.1| Pseudouridylate synthase [Burkholderia glumae BGR1] Length = 276 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFHGWQSQPHGNTVQDTLERALKAFARVPLQTVVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L ++++ + + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRTAFSWVRGTNAFL--PPSVAVQWAKPMPEAFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD E MR AA HL+G HDF++FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLAARAGWVHTPLDVEAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDIRPSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L++ L A++R P P+GLY Sbjct: 179 SFIHFRFRANAFLHHMVRNLMGCLIAVGRGRYPADWLDEVLAARNRDRAAPTFAPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|229546930|ref|ZP_04435655.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|229550518|ref|ZP_04439243.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|255971742|ref|ZP_05422328.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|255974742|ref|ZP_05425328.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256618347|ref|ZP_05475193.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|257081530|ref|ZP_05575891.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|257417608|ref|ZP_05594602.1| tRNA pseudouridine synthase [Enterococcus faecalis AR01/DG] gi|257421532|ref|ZP_05598522.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|307276430|ref|ZP_07557553.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|307278640|ref|ZP_07559710.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|312952641|ref|ZP_07771505.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|229304375|gb|EEN70371.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|229307858|gb|EEN73845.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255962760|gb|EET95236.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|255967614|gb|EET98236.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256597874|gb|EEU17050.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|256989560|gb|EEU76862.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|257159436|gb|EEU89396.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG] gi|257163356|gb|EEU93316.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|306504700|gb|EFM73900.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|306506910|gb|EFM76057.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|310629429|gb|EFQ12712.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|315026801|gb|EFT38733.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137] gi|315147137|gb|EFT91153.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244] gi|315153575|gb|EFT97591.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031] gi|315156245|gb|EFU00262.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043] gi|315158610|gb|EFU02627.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312] gi|315168134|gb|EFU12151.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341] gi|315171426|gb|EFU15443.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342] gi|323479455|gb|ADX78894.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62] gi|327534038|gb|AEA92872.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF] Length = 249 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|293567901|ref|ZP_06679242.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|291589486|gb|EFF21293.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] Length = 248 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + +V + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEVVSEDFHARYLVTEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + A P LD E ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|254418055|ref|ZP_05031779.1| tRNA pseudouridine synthase A [Brevundimonas sp. BAL3] gi|196184232|gb|EDX79208.1| tRNA pseudouridine synthase A [Brevundimonas sp. BAL3] Length = 247 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 116/248 (46%), Positives = 159/248 (64%), Gaps = 2/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y G+Q Q + ++QG++E AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTLEYDGTAYNGFQAQADQPTVQGAVEAAILAFSGERIRIAAAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRIITR 119 V H DL R+W + A+NA+L I + +L+ +HARFSA R YLYRI+ R Sbjct: 61 VIHADLERDWPVDTVLNAVNAHL-IKQDVCVLSAEYAPDPDWHARFSATGRGYLYRILNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + LE+ R W + KSLD E M AAQ LVG HDFTTFR + CQ+ SP++T+D V+ Sbjct: 120 RPQPVLERDRVWHVKKSLDAEAMHQAAQVLVGLHDFTTFRDVGCQSKSPVKTLDVARVSR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG + + ARSFLH Q+RS G+L VG G+WT+ D++ AL+A+DR CGP+AP GL Sbjct: 180 FGEEVHLVFQARSFLHRQVRSMAGTLVEVGLGRWTAHDVKAALEAKDRARCGPVAPSAGL 239 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 240 YLSGVRYD 247 >gi|259047524|ref|ZP_05737925.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175] gi|259035715|gb|EEW36970.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175] Length = 249 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY + I+Y+G+ Y G+Q Q+NG+SIQ + KA+ +T G+ + V G+GRTDSGVHA Sbjct: 1 MQRYKLTIQYDGTPYVGFQVQENGNSIQAELNKALKKMTKGQYIPVSGSGRTDSGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV H D + L +A+N+ L +I I++ V ++FHAR+S + Y+Y++ T Sbjct: 61 QVVHIDYPKRIEANSLVRAMNSLL--PTSIRIVSAEAVSEEFHARYSVTGKRYIYKVTTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + P D + + A + ++G HDFT+F S S +R + +V Sbjct: 119 QVQSPFLRQYELHHPFKTDVDRINKAFEAVIGEHDFTSFCSTKSDKDSKVRVVTKAEVKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL+ +R VG+ +GDG ++++ L+A DR GP AP GL Sbjct: 179 NGDELIFTFEGKGFLYNMVRILVGTALQIGDGLREVEEMKQILEAMDRNAAGPTAPSHGL 238 Query: 240 YFDSVEY 246 Y D V Y Sbjct: 239 YLDEVFY 245 >gi|256956829|ref|ZP_05561000.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|257078499|ref|ZP_05572860.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|294781084|ref|ZP_06746435.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|300861778|ref|ZP_07107858.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|307269121|ref|ZP_07550482.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|307286980|ref|ZP_07567055.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|312901088|ref|ZP_07760376.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|256947325|gb|EEU63957.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|256986529|gb|EEU73831.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|294451887|gb|EFG20338.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|295112531|emb|CBL31168.1| pseudouridylate synthase I [Enterococcus sp. 7L76] gi|300848303|gb|EFK76060.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|306501926|gb|EFM71215.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|306514601|gb|EFM83155.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|311291760|gb|EFQ70316.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|315031173|gb|EFT43105.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017] gi|315035981|gb|EFT47913.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027] gi|315145370|gb|EFT89386.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141] gi|315165868|gb|EFU09885.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302] Length = 249 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + IRTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKIRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|157144741|ref|YP_001452060.1| tRNA pseudouridine synthase A [Citrobacter koseri ATCC BAA-895] gi|166228694|sp|A8ADR1|TRUA_CITK8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157081946|gb|ABV11624.1| hypothetical protein CKO_00468 [Citrobacter koseri ATCC BAA-895] Length = 270 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V + FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKAVPEDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAILGHGVTHFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVTRHGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR+ A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRRLSAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|157363557|ref|YP_001470324.1| tRNA pseudouridine synthase ACD [Thermotoga lettingae TMO] gi|166991166|sp|A8F526|TRUA_THELT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157314161|gb|ABV33260.1| tRNA pseudouridine synthase A [Thermotoga lettingae TMO] Length = 245 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+ Y+G+ + G+Q QK+ ++QG E+A+ + + V+ AGRTD+GVHA Q Sbjct: 1 MKRFMAIVSYDGTNFCGFQVQKDVRTVQGMFEQALERILKQRVITIAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD + + A+NA L D I + + VDK FH RF A RR Y Y I Q Sbjct: 61 IVCFDCYLDIDEESMKNAMNANL--PDDIYVRKVVEVDKNFHPRFDAKRRIYHYLIYNSQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P + AW P L+ MR AA+ G HDF +F + +RTI V Sbjct: 119 EPNLFIRNYAWWFPYKLNICKMREAAKFFEGEHDFRSFMKSGDHRENTVRTIYRVRVLQL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +I IRV RSFL +R+ VG+L VG G+W D+ + L+ +DR + APP GL Sbjct: 179 RGGIILIRVEGRSFLRRMVRNMVGALVKVGVGEWKPEDISRVLELKDRSKAAVTAPPHGL 238 Query: 240 YFDSVEY 246 Y +V++ Sbjct: 239 YLYAVDF 245 >gi|224825086|ref|ZP_03698192.1| tRNA pseudouridine synthase A [Lutiella nitroferrum 2002] gi|224602757|gb|EEG08934.1| tRNA pseudouridine synthase A [Lutiella nitroferrum 2002] Length = 262 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 140/246 (56%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G+++Q + A+ + + AGRTD+GVHAL QV Sbjct: 1 MRVALGVEYDGRAFAGWQSQPHGNTVQDKLNLALSHIACAPINTVAAGRTDAGVHALMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ E + +N++L I+++ VD++FHARFSA RSY Y ++T Sbjct: 61 VHFDVEVERPENAWVRGVNSHL--PADIAVVWAKQVDEEFHARFSAFSRSYSYFLLTHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L G+ + LD E MR AA HL+GRHDF++FR+ CQA SP++ + D++ Sbjct: 119 RSCLLAGKVGWYHQPLDVEAMREAAAHLLGRHDFSSFRAAECQAKSPVKHLQRLDIHEAD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I ++A +FLH +R+ VG+L VG G + D+ L A+DR+ P P+GLY Sbjct: 179 GFIRFDLLADAFLHHMVRNIVGALVYVGKGTLSPEDMVDLLSARDRRHAPPTFMPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 TGVGYP 244 >gi|114706822|ref|ZP_01439722.1| tRNA pseudouridine synthase A [Fulvimarina pelagi HTCC2506] gi|114537770|gb|EAU40894.1| tRNA pseudouridine synthase A [Fulvimarina pelagi HTCC2506] Length = 261 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 127/247 (51%), Positives = 168/247 (68%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ + S+Q IE+A + G V+ GAGRTDSGVHA Q Sbjct: 1 MPRYKLTVEYDGTPYAGWQRQADEPSVQAVIEEAAHRLCGTNPVLFGAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+++ + + IL+ V F ARFSA +R Y YRI R+ Sbjct: 61 VAHIDLPKAYAGGTVRDALNAHMR-DEPVVILSAEEVGADFDARFSARKRWYRYRIFNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP A+ +G+ W + K LD E M AAQ L G HDFTTFRS HCQA +PIRT++ +V Sbjct: 120 APAAILRGKVWWVSKLLDTEAMHEAAQVLAGTHDFTTFRSTHCQAKNPIRTLEKLEVVRA 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +A+SFLH QIRSF G+LKLVG+G+WT+TD+ +AL+A+DR CGP+APP GL Sbjct: 180 NGEEIHIVAMAQSFLHNQIRSFAGTLKLVGEGRWTATDVSEALKAKDRTACGPVAPPYGL 239 Query: 240 YFDSVEY 246 Y ++EY Sbjct: 240 YLTAIEY 246 >gi|149185872|ref|ZP_01864187.1| tRNA pseudouridine synthase A [Erythrobacter sp. SD-21] gi|148830433|gb|EDL48869.1| tRNA pseudouridine synthase A [Erythrobacter sp. SD-21] Length = 249 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 124/247 (50%), Positives = 166/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IE++G+ +FG QRQ NG S+Q S+E+A F VTGE V +H AGRTD+GVHAL Sbjct: 1 MTRFALTIEFDGTPFFGLQRQDNGPSVQQSLEEAAFRVTGENVRLHSAGRTDTGVHALAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +H D+ ++ P L +ALNA ++ D I++ + +V +HARFS RSY+YRI R+ Sbjct: 61 RSHMDIEKDIEPFRLMEALNAQVR-PDPIAVTHCGVVPDDWHARFSCTGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE+ R W +P+ LD E M AA+ LVG HDFTTFRS+ CQ+ SP++T+D DV Sbjct: 120 APLTLERNRLWQVPQDLDHEAMDRAAKALVGLHDFTTFRSVQCQSQSPVKTLDRLDVERD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS VG L LVG G+W L +AL+A+DR+ G APP GLY Sbjct: 180 GEEVRIHAAARSFLHHQVRSVVGCLALVGMGRWREEQLAEALEAKDRQALGLNAPPHGLY 239 Query: 241 FDSVEYS 247 F + Y Sbjct: 240 FVAATYP 246 >gi|148544665|ref|YP_001272035.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016] gi|184154018|ref|YP_001842359.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112] gi|194466922|ref|ZP_03072909.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23] gi|227363788|ref|ZP_03847895.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3] gi|325682999|ref|ZP_08162515.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A] gi|166991164|sp|A5VLH4|TRUA_LACRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229557996|sp|B2G8U7|TRUA_LACRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148531699|gb|ABQ83698.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016] gi|183225362|dbj|BAG25879.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112] gi|194453958|gb|EDX42855.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23] gi|227071145|gb|EEI09461.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3] gi|324977349|gb|EGC14300.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A] Length = 256 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q N +++ +++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + KALN+ L I I +VD FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDIPYHLSNESMRKALNSIL--PLDILIKKAELVDNDFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ L+ E MR AA LVG HDFT+F + QA S +RTI++ + Sbjct: 119 QGEFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFVASGSQAKSNVRTIENITI 178 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N + FL+ Q+R V L +G + D+ + L+A+DR AP Sbjct: 179 KRDEVRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLKAKDRTLARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY +V+Y Sbjct: 239 ASGLYLVNVDY 249 >gi|308172039|ref|YP_003918744.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7] gi|307604903|emb|CBI41274.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7] gi|328551849|gb|AEB22341.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens TA208] gi|328910104|gb|AEB61700.1| pseudouridylate synthase I [Bacillus amyloliquefaciens LL3] Length = 247 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ T V V+ +GRTDS VHA Sbjct: 1 MRMKCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGRVPVYSSGRTDSDVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAEKWPFALNALL--PDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ + MR A++HL+G HDFT+F ++ +RTI + Sbjct: 119 KHPDVFKRHYAYHFAYQLNVQKMREASRHLIGTHDFTSFCAVDTAVQDKVRTIYELEWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +++R+ FL+ +R G+L G GK++ D++ L+A+DR+ G AP GL Sbjct: 179 TGDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y SV Y Sbjct: 239 YLWSVCYD 246 >gi|62901272|sp|Q65TC8|TRUA_MANSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 263 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG YFGWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKNYFGWQRQEKVHSVQAELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D I++ V FHARFSA R Y Y + + Sbjct: 61 VHFETNAIRPEKAWAFGTNANL--PDDIAVRWAKEVPDDFHARFSATARRYRYVLYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A + L+G +DF++FR+ CQ+++P R I H +V G Sbjct: 119 RSAILPYGITHTHLDLDEHKMQEAGRFLLGENDFSSFRAAQCQSNTPWRNIHHLNVIRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VGSL VG G +E L ++RK P A EGLY Sbjct: 179 NFVIVDIKANAFVHHMVRNIVGSLMEVGCGNQPPEWIEWLLAQKNRKLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VQVTYP 244 >gi|283786396|ref|YP_003366261.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168] gi|282949850|emb|CBG89473.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168] Length = 269 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + +EY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 10 KIALGVEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 69 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V + FHARFSA R Y Y I + Sbjct: 70 HFETSALRKDAAWTLGVNANL--PGDIAVRWVKAVPEDFHARFSATARRYRYIIYNHRLR 127 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ G Sbjct: 128 PAVLAKGVTHYYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRHGA 187 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 188 YVVVDIKANAFVHHMVRNIVGSLMEVGAHHQPESWIAELLAAKDRTLAAATAKAEGLYLV 247 Query: 243 SVEYS 247 +V+Y Sbjct: 248 AVDYP 252 >gi|256960635|ref|ZP_05564806.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|293382724|ref|ZP_06628649.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|293388093|ref|ZP_06632621.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|312908619|ref|ZP_07767561.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|312909233|ref|ZP_07768090.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|256951131|gb|EEU67763.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|291079884|gb|EFE17248.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|291082544|gb|EFE19507.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|310625406|gb|EFQ08689.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|311290475|gb|EFQ69031.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] Length = 249 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NKTGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|71892269|ref|YP_278003.1| tRNA pseudouridine synthase A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123775274|sp|Q492H3|TRUA_BLOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71796375|gb|AAZ41126.1| tRNA pseudouridine synthase A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 261 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y GWQRQ++ SIQ IE AI +T E V V AGRTDSGVHAL Q Sbjct: 1 MQKLALGIEYDGSWYCGWQRQRDAPSIQSYIENAIKKITSESVTVFCAGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +N YL +I + +V+K FHARFSAI R Y Y I Sbjct: 61 VVHFETYSRRSKSAWTLGMNRYL--PSSICVRWARLVNKDFHARFSAISRRYCYIINNNC 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + W K LD M AAQ+L+G +DF++FR+ CQ+ S R + H + Sbjct: 119 IRSALLFRKTWHYKKYLDINKMCDAAQYLLGENDFSSFRAAGCQSYSARRKLYHIRIIRK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A SF++ +R+ VGSL VG G+ + + L+ +R G AP GLY Sbjct: 179 GQCIVIDIKANSFMYRMVRNIVGSLVKVGCGEQPEKWIAELLENCNRSLAGVTAPASGLY 238 Query: 241 FDSVEYS 247 V+Y Sbjct: 239 LVEVKYP 245 >gi|271501293|ref|YP_003334318.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech586] gi|270344848|gb|ACZ77613.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech586] Length = 292 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+QG +E A+ V E + V AGRTD+GVHA QV Sbjct: 14 KIALGIEYDGSRYYGWQRQAEVGSVQGCLEAALSQVANERIDVFCAGRTDAGVHATGQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD+ FHARFSA R Y Y I R+ Sbjct: 74 HFTTNAVRKDAAWTMGVNANL--PPDIAVRWVKTVDEAFHARFSATARRYRYVIYNRRFR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M A Q L+G +DFT+FR++ CQ+ +P R + H V G+ Sbjct: 132 PAILSHGVTHYYLPLDADRMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVTRLGD 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G +++ L A+DR A +GLY Sbjct: 192 YVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPENWMDELLAAKDRTLAAATAKADGLYLV 251 Query: 243 SVEYS 247 +V+Y Sbjct: 252 AVDYP 256 >gi|67459748|ref|YP_247372.1| tRNA pseudouridine synthase A [Rickettsia felis URRWXCal2] gi|75535862|sp|Q4UJT2|TRUA_RICFE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|67005281|gb|AAY62207.1| tRNA pseudouridine synthase A [Rickettsia felis URRWXCal2] Length = 245 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 109/246 (44%), Positives = 151/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVISVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKHLEPHKIITAIN-YFARPYAVGVWNCELASNNFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVLTMQKAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKTEY 245 >gi|256855196|ref|ZP_05560557.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|307291679|ref|ZP_07571554.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|256709709|gb|EEU24756.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|306497298|gb|EFM66840.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|315028842|gb|EFT40774.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000] Length = 249 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IE+ + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEETLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|154684666|ref|YP_001419827.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens FZB42] gi|166228678|sp|A7Z0S0|TRUA_BACA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154350517|gb|ABS72596.1| TruA [Bacillus amyloliquefaciens FZB42] Length = 247 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 132/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ T V V+ +GRTDS VHA Sbjct: 1 MRVKCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGRVPVYSSGRTDSDVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPGEKWPFALNALL--PDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ + MR A++HLVG HDFT+F + +RTI D Sbjct: 119 KHPDVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFTSFCAADTAVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK++ D++ L+A+DR+ G AP GL Sbjct: 179 TVDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y SV Y Sbjct: 239 YLWSVCYD 246 >gi|220930998|ref|YP_002507906.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|220931093|ref|YP_002508001.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|219992308|gb|ACL68911.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|219992403|gb|ACL69006.1| pseudouridylate synthase I [Halothermothrix orenii H 168] Length = 246 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + +EY+G+ Y GWQ Q N +IQG + K +F + V + GA RTD+GVHA Sbjct: 1 MERNIKITVEYDGTNYSGWQIQNNTPETIQGVLSKCLFDINKSPVKLIGASRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA+F L + ALN+ L I + V + FHARF A + Y+YRI+ Sbjct: 61 GQVANFRLKVGIPVERIPLALNSKL--PPDIVCKDAEEVTEDFHARFDARGKRYIYRILN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P + + IP +L+ + MR A L+G HDF +F++ + +RTI D+ Sbjct: 119 SEYPSPFLRNYTYFIPHNLNIDKMREAGSLLIGEHDFASFQASGGSNKTTVRTITKLDIY 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I+I V FL+ +R G+L VG GK T + + L+ +DR G APP G Sbjct: 179 RDQYQIKIEVCGNGFLYKMVRIIAGTLIEVGLGKRTVKSVGQLLEIKDRDRAGFTAPPRG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LTLIEVFY 246 >gi|257088682|ref|ZP_05583043.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|256997494|gb|EEU84014.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|315160761|gb|EFU04778.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645] gi|315579360|gb|EFU91551.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630] Length = 249 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLVRMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|237808326|ref|YP_002892766.1| tRNA pseudouridine synthase A [Tolumonas auensis DSM 9187] gi|259550489|sp|C4LF13|TRUA_TOLAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|237500587|gb|ACQ93180.1| tRNA pseudouridine synthase A [Tolumonas auensis DSM 9187] Length = 261 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ Y+GWQRQ+ +S+Q +E A+ V V + AGRTD+GV+A QV Sbjct: 1 MRIALGIEYFGADYYGWQRQREVNSVQQELETALSRVANHPVEIQCAGRTDAGVNATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L D I++ +VD FHARFSA R Y Y I Sbjct: 61 IHFDTTANRQMSAWTLGINAQL--PDDIAVRWAHVVDDNFHARFSATARRYRYIIYNEPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + L+ + M A Q L+G DFT+FR+ CQ+++P R I V+ G Sbjct: 119 RPGILAKGVSHYYHPLNADQMNEAGQLLLGERDFTSFRAAQCQSNTPFRNIMSLSVHRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ +GSL LVG G+ + + L A+DR G A EGLY Sbjct: 179 SYVILDIQANAFLHHMVRNIMGSLLLVGTGEKPKEWIGEILDAKDRTVSGATAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|153952894|ref|YP_001393659.1| tRNA pseudouridine synthase A [Clostridium kluyveri DSM 555] gi|189029994|sp|A5N4T0|TRUA_CLOK5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146345775|gb|EDK32311.1| TruA [Clostridium kluyveri DSM 555] Length = 244 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++IEY+G+ Y GWQRQ N +IQ +E+AI TGE V G+ RTD+GVHA Sbjct: 1 MKNIKLVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + LN L + I++L+ VD FH+R+ + Y Y I+T Sbjct: 61 VCNFFTASKIPTSNIKMVLNTLL--PEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + LD E ++ + ++ +G HDF+ F+ A S IRTI V Sbjct: 119 RPPVIGRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I+ +V FL+ +R +G+L VG G+++ ++ L+++DR + G P +GL Sbjct: 179 KNIIKFNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|307825597|ref|ZP_07655815.1| tRNA pseudouridine synthase A [Methylobacter tundripaludum SV96] gi|307733483|gb|EFO04342.1| tRNA pseudouridine synthase A [Methylobacter tundripaludum SV96] Length = 267 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+GSG+ GWQ Q + S+Q +E+A+ V V V AGRTD+GVHAL Q Sbjct: 1 MTRIVLGIEYDGSGFSGWQWQTHQRSVQQVLEQALSKVANHPVTVQCAGRTDTGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N+ L D + I + FHAR+SAI R Y Y I+ R Sbjct: 61 VVHFDAKVERELHTWVLGGNSNL--PDDVRITWVKPAVGDFHARYSAIARFYRYVILNRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + +A LD + M AAQHL+G+HDF+TFR+ CQ+ SP R + DV Sbjct: 119 IKSALLRNQATWHHNPLDADKMHRAAQHLIGKHDFSTFRAQGCQSKSPCREMYFIDVYRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + I + A +FLH +R+ G L +G GK + ++ L+ ++RK G APP GLY Sbjct: 179 DDKVIIDISANAFLHHMVRNIAGVLMDIGAGKQDESWTQELLEVKNRKLGGVTAPPYGLY 238 Query: 241 FDSVEYS 247 +V Y Sbjct: 239 LGAVYYP 245 >gi|207722996|ref|YP_002253419.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum MolK2] gi|206588185|emb|CAQ18754.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum MolK2] Length = 274 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 139/251 (55%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + H D + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 IIHLDTDLVREAFSWVRGTNAFL--PSTVAVRWAQAVPEDFHARFSAHRRTYYYALVSGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L G+A + +SLD M+ AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRSPLLGGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTLYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 239 DGLYLAEVGYP 249 >gi|268608385|ref|ZP_06142112.1| tRNA pseudouridine synthase A [Ruminococcus flavefaciens FD-1] Length = 257 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y G+ Y G+Q Q N ++QG++EK + V E V + G RTD+GVHA Sbjct: 1 MRNLKVTIAYRGTNYHGFQIQNNAVTVQGTLEKHLSKVLNEPVSITGCSRTDTGVHANMF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + + C+ +N L D ISIL+ V FHARF + Y+Y++ + Sbjct: 61 CFNVKTNSRISTLGFCRGVNGEL--PDDISILSCEEVPIDFHARFDCKGKEYIYKMHCSE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + D E R AAQ+ VG HDF++F + S+ +RTI F + + Sbjct: 119 SKDPFAPDMKFHYRRPFDIEAARKAAQYFVGTHDFSSFCADCTNVSTTVRTIYSFKIENS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + V FL+ IR G+L V + +++ D+ + L+A+DR + G A GLY Sbjct: 179 GDTVIMLVKGNGFLYNMIRIMAGTLIDVSEKRFSPDDMPRILEAKDRLQAGRTAMAHGLY 238 Query: 241 FDSVEYS 247 + V YS Sbjct: 239 LNRVFYS 245 >gi|256618219|ref|ZP_05475065.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|256597746|gb|EEU16922.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|315033638|gb|EFT45570.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017] Length = 246 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|167566409|ref|ZP_02359325.1| tRNA pseudouridine synthase A [Burkholderia oklahomensis EO147] Length = 270 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA+HLVG HDF+ FRS CQA SPI+ + + G Sbjct: 119 RSPMLAGRAGWVHMPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPIKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L ++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLDSRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|251792608|ref|YP_003007334.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus NJ8700] gi|247534001|gb|ACS97247.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus NJ8700] Length = 261 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQ+Q+ +S+Q +E+AI V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKQYFGWQKQEKVASVQAELERAISTVANEEISIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D +++ +VD FHARFSA R Y Y + + Sbjct: 61 IHFETTANRPEKAWSFGVNANL--PDDVAVRWAKVVDDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V+ G Sbjct: 119 RSAILPQGVTHCHLELDHQLMHQAGQALLGENDFSSFRAAQCQSNTPWRNVHHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G + L L +DR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQSVEWLAWLLAQKDRTLAAPTAKPEGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VNVFYP 244 >gi|160894723|ref|ZP_02075498.1| hypothetical protein CLOL250_02274 [Clostridium sp. L2-50] gi|156863657|gb|EDO57088.1| hypothetical protein CLOL250_02274 [Clostridium sp. L2-50] Length = 245 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 125/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +I+ + + I + E + V GA RTD+GVHA Sbjct: 1 MKRVKLVVAYDGTNYHGWQVQDNGITIEEVLNRTISELVQEDIKVIGASRTDAGVHACGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L D I I VD FH R++ ++Y Y I+ R+ Sbjct: 61 VAVFDTESRIPGDKFSFALNQRL--PDDIRIQESCEVDADFHPRYADTVKTYEYNILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ A +D E M AA +LVG HDF +F S Q + +RTI +V Sbjct: 119 FEMPSKRLYAAFCYYPMDIERMNQAAAYLVGEHDFKSFCSAGAQVQTTVRTIYAVNVTKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ IR+ FL+ +R G+L VG G +++ L+A+DR + GP A +GL Sbjct: 179 DDMVHIRITGNGFLYNMVRIIAGTLMQVGTGLMEPERVKEILEARDRSKAGPTAVAKGLT 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 LVEIRYE 245 >gi|256822702|ref|YP_003146665.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069] gi|256796241|gb|ACV26897.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069] Length = 264 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 118/247 (47%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+G Y GWQRQ + SS+Q ++EK + + E + V AGRTD+GVHA Q Sbjct: 1 MTKVALCIEYDGHRYHGWQRQSHASSVQQTLEKVLSTIADEPIEVSCAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HF+L E N L D I++ V FHARFSA R Y Y I Sbjct: 61 IIHFELSNERPLKAWTMGANTQL--PDDIAVRWAHSVSDDFHARFSAKARRYRYIIANTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + LD + M A + G DF F++ CQ+ + R I H V Sbjct: 119 TRPAISRSGLTWCRAPLDIDVMNQACAYFPGEQDFAAFQAASCQSKTSFRNIHHLFVERL 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +FLH +R+ GSL +G ++ L +DR + A P GLY Sbjct: 179 GEYVVIDIKANAFLHHMVRNIAGSLIEIGRYNQKPEWAKQLLDGKDRTQAASTASPNGLY 238 Query: 241 FDSVEYS 247 VEY Sbjct: 239 LVDVEYP 245 >gi|15604687|ref|NP_221205.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. Madrid E] gi|3861382|emb|CAA15281.1| PSEUDOURIDYLATE SYNTHASE I (truA) [Rickettsia prowazekii] Length = 253 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 112/246 (45%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ + E V + G+GRTD+GVHA+ Q Sbjct: 9 MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + KA+N Y + + N +V FHARFSAI R Y+YRII R Sbjct: 69 VAHFDLSKYLEPYKIIKAIN-YFVRPYDVGVWNCELVSNNFHARFSAISRHYIYRIINRT 127 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 128 YPSVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L A+DRK GP AP GLY Sbjct: 188 YEEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY 247 Query: 241 FDSVEY 246 F EY Sbjct: 248 FIKAEY 253 >gi|118581782|ref|YP_903032.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379] gi|166228745|sp|A1AUF4|TRUA_PELPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118504492|gb|ABL00975.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379] Length = 244 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ Y GWQ Q NG ++Q +E+A+ + GE V + +GRTD+GVHA Sbjct: 1 MRTIKLTIEYDGTNYAGWQVQPNGLAVQQVLEEALLRLLGERVRLRSSGRTDAGVHARAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F R N +L D I+IL+ + +F A + Y Y I Sbjct: 61 VASFTTSRSLPLQAFVGGANRFL--PDDIAILSAAEAAPEFRPIQDARSKWYRYTIYNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + + LD + M++AA H GRHDF FR+ +C A + +R ID + S Sbjct: 119 VRSPLRRLFSWHVREPLDTDAMQLAAHHFPGRHDFAAFRASNCAAKTTLRRIDSVTIASE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI I V+ FL +R G+L VG G++ + L+ DRK+ G AP GL Sbjct: 179 GELIVIDVIGEGFLKNMVRVMAGTLVDVGRGRFEPERVAWLLENPDRKKAGVTAPACGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LMDVSY 244 >gi|84683526|ref|ZP_01011429.1| tRNA pseudouridine synthase A [Maritimibacter alkaliphilus HTCC2654] gi|84668269|gb|EAQ14736.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2654] Length = 257 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 123/251 (49%), Positives = 169/251 (67%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQK+ S+QG++E A+ + ++ + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGRPFSGWQRQKDQPSVQGAVEAALGKLEADVPSIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL ++W P L +ALN +LK D ++I+ ++VD FHARFSAI R YL+R+I+R+ Sbjct: 61 VATCDLQKDWTPFRLTEALNYHLK-PDRVAIVACALVDDGFHARFSAIERQYLFRLISRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 APL ++G AW + ++LD + M+ A L+GRHDFTTFRS CQA SP++T+D V Sbjct: 120 APLVHDRGNAWRVVQALDADAMQAGADRLIGRHDFTTFRSTMCQADSPVKTLDELRVETL 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G V ARSFLH Q+RSFVG+L+ VG G W+ D+ AL+A+DR CGP+ PP Sbjct: 180 PYPGGTEYRFHVRARSFLHNQVRSFVGTLERVGAGSWSPDDVTAALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 DGLYLARVGYP 250 >gi|115522681|ref|YP_779592.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisA53] gi|122297686|sp|Q07TX2|TRUA_RHOP5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115516628|gb|ABJ04612.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisA53] Length = 246 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 132/247 (53%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ Y GWQ Q+NG SIQG++E A + GE + V GAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGTPYCGWQIQENGPSIQGALEDAAKAICGEAIRVRGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++ P L ALNA+L+ I ++ IV F ARFSAI+R Y+YRI R+ Sbjct: 61 VAHCDVPKQLPPGRLRDALNAHLR-PQPIGVITAEIVPDDFEARFSAIKRHYVYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL RAW +P+ LD + M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALAINRAWRVPRRLDSDAMHEAAQRLIGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDEIRIVTSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARSRSACGPVAPPDGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LVKVDYE 246 >gi|167577247|ref|ZP_02370121.1| tRNA pseudouridine synthase A [Burkholderia thailandensis TXDOH] Length = 270 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFL--PSTVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD + MR AA+HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAARAGWVHTPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|255974352|ref|ZP_05424938.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|257088141|ref|ZP_05582502.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|307278161|ref|ZP_07559243.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|255967224|gb|EET97846.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256996171|gb|EEU83473.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|306505150|gb|EFM74338.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|315026898|gb|EFT38830.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137] Length = 246 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|170761533|ref|YP_001788787.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] gi|169408522|gb|ACA56933.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] Length = 246 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EK I +T E V + G RTDSGVHA Sbjct: 1 MKNIKLKLEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITKEKVEIIGVSRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F P L K +N L I +L+ V +FH+RF + ++Y Y ++ Sbjct: 61 GYVCNFFTNTRIPPENLQKVINNNL--PQDIVVLSSEEVSNEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM+IA+++ +G HDF+ F++ + +RTI+ F+++ Sbjct: 119 SPQPIAIGRNYIFQFKDKLNIDNMKIASRYFIGTHDFSAFKTKGSSVKTSVRTINEFEID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG L +G K +E ++++DR++ G P G Sbjct: 179 KKGDFIKFTITGDGFLYNMVRIIVGILIEIGLNKREPEYVEYVIKSKDRRKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|315151105|gb|EFT95121.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012] Length = 249 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 239 GLYLAEVRYE 248 >gi|254293237|ref|YP_003059260.1| tRNA pseudouridine synthase A [Hirschia baltica ATCC 49814] gi|254041768|gb|ACT58563.1| tRNA pseudouridine synthase A [Hirschia baltica ATCC 49814] Length = 247 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 118/247 (47%), Positives = 156/247 (63%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS Y GWQRQK S+Q +E+AI GE V VHGAGRTD+GVHA+ Q Sbjct: 1 MARFKLTIEYDGSPYVGWQRQKTHRSVQQVLEEAIPKFAGETVTVHGAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +E+ + A+N + + +SIL V +FHARFSA R Y+YRII R+ Sbjct: 61 VAHIDLSKEFTTDKVRDAMN-HFMKDEPVSILLAEEVSDEFHARFSAYARHYIYRIIDRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L ++ AW +D + M AAQ LVG+HDF+TFR CQA SP++T+ +V Sbjct: 120 ADLTFDRNLAWRAMSPVDADAMHEAAQCLVGKHDFSTFRDAQCQAESPVKTLSKIEVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I V A SFLH Q+RS GSL +G GK + +++ L A DR CG +APP+GLY Sbjct: 180 GDEINIYVSAPSFLHRQVRSITGSLMEIGRGKKPISWMQEILGAADRSRCGTVAPPDGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LSQVDYP 246 >gi|302877741|ref|YP_003846305.1| tRNA pseudouridine synthase A [Gallionella capsiferriformans ES-2] gi|302580530|gb|ADL54541.1| tRNA pseudouridine synthase A [Gallionella capsiferriformans ES-2] Length = 255 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G Y GWQ Q G ++Q +++ A+ + V V+ AGRTD+GVHAL QV Sbjct: 1 MRIALGVEYDGKPYCGWQSQPGGRTVQDTLQSALSHIADAPVTVNAAGRTDTGVHALEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L ++ + V +FHARFSA RSY Y +I + Sbjct: 61 VHFETDANRPLSAWVRGVNAML--PPSVVVRWAHPVPDEFHARFSAQGRSYRYLLINKPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+A LD MR AA +L+G HDF+ FR+ CQA SP++ ++ D+ G Sbjct: 119 RSAIHAGKAGWFHLPLDIALMREAAGYLLGEHDFSAFRAAECQAKSPVKCMNKIDIYLNG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + A +FLH +R+ VG L VG GK+ + L ++ R P P+GLY Sbjct: 179 DVLVFDLEANAFLHHMVRNIVGCLVYVGKGKYPPAWMADLLASRTRHLAAPTFSPDGLYL 238 Query: 242 DSVEYS 247 ++Y Sbjct: 239 RRIQYD 244 >gi|229917326|ref|YP_002885972.1| tRNA pseudouridine synthase A [Exiguobacterium sp. AT1b] gi|259550390|sp|C4KZL4|TRUA_EXISA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229468755|gb|ACQ70527.1| tRNA pseudouridine synthase A [Exiguobacterium sp. AT1b] Length = 246 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 131/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y G+Q Q NG++IQ IE + + V + +GRTD+ VHAL Q Sbjct: 1 MRRIKLIVAYDGTHYAGYQVQPNGNTIQAEIESVLARMHRHPVKIIASGRTDARVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E KALNA L D I + +D FHAR+ A R+ Y Y I RQ Sbjct: 61 VIHFDTTLEMPAERFVKALNAML--PDDILVKQAEEMDDTFHARYGAKRKEYRYHI--RQ 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + L E MR A + L+G HDFT+F + +RTI +V Sbjct: 117 TEDPFRRHYAATVTYKLSLEAMRQAMERLIGTHDFTSFSVTKAEVEDRVRTIYEAEVLEM 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R V FL+ Q+R VG++ VG GK+ D+ + L+A+DR+ G APP GLY Sbjct: 177 GDEIIFRFVGSGFLYNQVRIMVGTVIEVGRGKYQPADITQMLEAKDRRVAGITAPPHGLY 236 Query: 241 FDSVEYS 247 +V Y Sbjct: 237 LWNVNYE 243 >gi|52425230|ref|YP_088367.1| tRNA pseudouridine synthase A [Mannheimia succiniciproducens MBEL55E] gi|52307282|gb|AAU37782.1| TruA protein [Mannheimia succiniciproducens MBEL55E] Length = 270 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG YFGWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 8 MKIALGIEYNGKNYFGWQRQEKVHSVQAELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D I++ V FHARFSA R Y Y + + Sbjct: 68 VHFETNAIRPEKAWAFGTNANL--PDDIAVRWAKEVPDDFHARFSATARRYRYVLYCNKL 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A + L+G +DF++FR+ CQ+++P R I H +V G Sbjct: 126 RSAILPYGITHTHLDLDEHKMQEAGRFLLGENDFSSFRAAQCQSNTPWRNIHHLNVIRRG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VGSL VG G +E L ++RK P A EGLY Sbjct: 186 NFVIVDIKANAFVHHMVRNIVGSLMEVGCGNQPPEWIEWLLAQKNRKLAAPTAKAEGLYL 245 Query: 242 DSVEYS 247 V Y Sbjct: 246 VQVTYP 251 >gi|315169224|gb|EFU13241.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341] gi|315171531|gb|EFU15548.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342] Length = 277 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 91 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 92 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 149 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 150 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIER 209 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 210 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 269 Query: 240 YFDSVEY 246 + D V Y Sbjct: 270 FLDEVYY 276 >gi|254429312|ref|ZP_05043019.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881] gi|196195481|gb|EDX90440.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881] Length = 267 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY+G+ + GWQ +Q ++Q +E A+ V V V AGRTD+GVH Sbjct: 1 MTRIALGIEYDGTDFRGWQTQQPGVRTVQECLEAALSKVANHPVAVVCAGRTDAGVHGTG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD N L +++ + VD FHARFSA+ R Y Y I Sbjct: 61 QVVHFDSEAPREMKSWIMGANTNL--PRDVTVRWATPVDDAFHARFSAVSRRYRYVIYNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P AL + + + LD MR AA +LVG HDFT +RS+HCQA SP++T+ ++ Sbjct: 119 ARPPALFRNQVTWNYRPLDVAAMREAAAYLVGEHDFTAYRSVHCQAKSPLKTMHSLELYE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + A +FL +R+ G L VG GK + + L+ +DR++ APP GL Sbjct: 179 HGKVLVLEAHANAFLMHMVRNIAGVLMSVGAGKRPAHWAREVLEGRDRRKGAATAPPFGL 238 Query: 240 YFDSVEYS 247 Y +EY Sbjct: 239 YLVDIEYP 246 >gi|170742366|ref|YP_001771021.1| tRNA pseudouridine synthase A [Methylobacterium sp. 4-46] gi|238688005|sp|B0UP40|TRUA_METS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168196640|gb|ACA18587.1| tRNA pseudouridine synthase A [Methylobacterium sp. 4-46] Length = 250 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 113/247 (45%), Positives = 156/247 (63%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+GSG+ GWQRQ ++Q ++E+AI G V VH AGRTD+GVHA Q Sbjct: 1 MPRYKLVVEYDGSGFAGWQRQAADRTVQQALEEAIARFAGAPVRVHCAGRTDAGVHATHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL R+W + A NA+L+ + +++++ V F AR SA+RR Y YRI+ R+ Sbjct: 61 VVHLDLDRDWRTDTVRDASNAHLR-PEPVAVVSAERVRPDFDARHSALRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P SLD M AAQ L+GRHDF+ FR+ CQA+SP+RT+D DV Sbjct: 120 SPPALGRAYLWHVPWSLDAHAMHAAAQTLLGRHDFSAFRAAECQANSPVRTLDQLDVARI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R VG+L L G G+ + + L ++DR CGPLAP GL Sbjct: 180 GDEILVATSARSFLHHQVRGMVGTLMLAGCGRLDAAGVRAVLDSRDRTRCGPLAPAAGLT 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LTGVDYP 246 >gi|312796827|ref|YP_004029749.1| tRNA pseudouridine synthase A [Burkholderia rhizoxinica HKI 454] gi|312168602|emb|CBW75605.1| tRNA pseudouridine synthase A (EC 4.2.1.70) [Burkholderia rhizoxinica HKI 454] Length = 271 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + ++Y+G+ + GWQ Q +G+++Q +E+A+ + AGRTD+GVHAL QV Sbjct: 6 MRIALGLQYDGAAFCGWQAQPHGNTVQNVLERALEQFAQVPLPTVVAGRTDTGVHALGQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + + +NA+L ++S+ V FHARF+A R+Y Y + Sbjct: 66 VHFDTLLDRAAFSWVRGVNAFL--PPSVSVQWAKPVPPTFHARFAAFERTYFYVLYVHPV 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD E MR AA +L+G HDF++FRS CQA +P++ + D+ G Sbjct: 124 RSPMLARRAGWVHTPLDVEAMREAAGYLIGEHDFSSFRSSDCQAKTPVKHLYAIDIVEHG 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + +R A +FLH +R+ +G L VG + + + + L A++RK P P+GLY Sbjct: 184 PFVHLRFRANAFLHHMVRNIMGCLVSVGRHRHPACWMAEVLAARERKHAAPTFMPDGLYL 243 Query: 242 DSVEYS 247 V Y Sbjct: 244 AQVGYP 249 >gi|83718190|ref|YP_438876.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] gi|167621345|ref|ZP_02389976.1| tRNA pseudouridine synthase A [Burkholderia thailandensis Bt4] gi|257141962|ref|ZP_05590224.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] gi|123753984|sp|Q2T7H3|TRUA_BURTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83652015|gb|ABC36079.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] Length = 270 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFL--PSTVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD + MR AA+HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAARAGWVHTPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLESRDRGCAAPTFMPEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|260431135|ref|ZP_05785106.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis ITI-1157] gi|260414963|gb|EEX08222.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis ITI-1157] Length = 255 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 123/251 (49%), Positives = 159/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G + GWQRQK S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYQGEPFAGWQRQKELPSVQGAIEAALSKLQPGSHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK ++IL + V +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLEKDWDPFRLSEALNYHLK-PLPVAILKAAQVADDWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP +KG+ W I LD M+ A L+GRHDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDKGQVWQIGHPLDVAAMQEGADMLIGRHDFTTFRSSICQAASPVKTLDELRVEQV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL+A DR CGP+ PP Sbjct: 180 QGFSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGAWTPQDVRDALEATDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLARVGYP 250 >gi|190571328|ref|YP_001975686.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018724|ref|ZP_03334532.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238057739|sp|B3CMC1|TRUA_WOLPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190357600|emb|CAQ55041.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995675|gb|EEB56315.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 245 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 113/246 (45%), Positives = 155/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+Q++ +SIQ +IE AIF +GE V +H GRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGERVSLHCGGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF++ R++ + +N +LK I +L+ VD FHARFSA +R Y YRII R Sbjct: 61 VAHFNMERQFELYRIRNGINYHLKA-IPIVVLSAEAVDDAFHARFSAKKRYYEYRIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+H+ ++FRS CQA++P+RTID D+ Sbjct: 120 APAALEIGYVWQVFNPLDVNIMREAARHLLGKHNLSSFRSKDCQATNPVRTIDDIDIVQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I++ A SFLH Q+R VG+L G + ++ L R G APP GLY Sbjct: 180 GSHIYIKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILSQCKRNAAGITAPPHGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|332992505|gb|AEF02560.1| tRNA pseudouridine synthase A [Alteromonas sp. SN2] Length = 263 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ GWQRQK+ +S+Q +EKA+ ++ + ++V AGRTD+GVHA Q Sbjct: 1 MGRIALGIEYDGASVHGWQRQKDVASVQEYLEKALTVIANKPIIVFCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD E +NA + DTI++ V FHARFSA R Y Y I + Sbjct: 61 IVHFDSDVERPERAWTLGINANM--PDTIAVTWAKPVSDDFHARFSATHRRYRYVIYNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + LD E M AAQ LVG HDFTTFR+ CQ+ +P RT+ V+ Sbjct: 119 MRPAILHNGVTHEYRELDAEKMHEAAQALVGEHDFTTFRASLCQSKTPHRTVSSVSVHRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A +FLH +R+ GSL +G G+ + L +DR + A P GLY Sbjct: 179 GRYVVLDIRANAFLHHMVRNITGSLLCIGAGEQPVDWMAHLLTLKDRAKAATTAKPNGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LVDVTYP 245 >gi|83645231|ref|YP_433666.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396] gi|83633274|gb|ABC29241.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396] Length = 283 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+GS Y GWQ Q S+Q +E A+ V V V AGRTD+GVHA+ QV Sbjct: 23 RVALVLGYDGSRYHGWQAQNSGVPSVQAEVESALAKVADHPVSVVCAGRTDAGVHAVNQV 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ P +N +L +S+ V + FHAR++A RSY Y I Sbjct: 83 VHFETKALRSPYSWAMGVNHFL--PADVSVSWAGAVPEDFHARYTATSRSYRYVIYNHPI 140 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E+M A HL+G +DF+ FR CQ+ SP R + +V+ FG Sbjct: 141 RPAWLNNSVTWNYRPLDVESMSAAGAHLIGENDFSAFRGSDCQSKSPFRNLTRLEVSRFG 200 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ I V A +FLH +R+ G+L VG GK S + L ++ R + G APP GLY Sbjct: 201 DMVVIEVEANAFLHHMVRNISGTLMAVGTGKKPSDWVADVLASKKRSKAGVTAPPFGLYL 260 Query: 242 DSVEYS 247 SV Y Sbjct: 261 TSVTYP 266 >gi|256762037|ref|ZP_05502617.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256683288|gb|EEU22983.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] Length = 249 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERASEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|167855019|ref|ZP_02477793.1| ribonuclease G [Haemophilus parasuis 29755] gi|167853867|gb|EDS25107.1| ribonuclease G [Haemophilus parasuis 29755] Length = 262 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+G Y GWQRQ+ S+Q +E+A+ ++ V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGRRYCGWQRQQYVDSVQQRLEEALSVIANSSCEVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD C NA+L + I + V FHARFSA+ R Y Y I + Sbjct: 61 VHFDTDVNRPMQSWCLGTNAHL--PEDIVVKWAIGVSDDFHARFSALARRYRYVIYNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ SLD E M A Q L+G +DF++FR+ CQ+ +P R + H V+ Sbjct: 119 RSAILPKGISHYHYSLDHEKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLIVSRHQ 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 179 DYIILDIQANAFVHHMVRNIVGSLIEVGRGDKPVEWIKWLLEKRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VEVIYP 244 >gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4] gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4] Length = 259 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y+G+ + G+QRQ ++QG +E+A+ +T E V GAGRTD+GVHA QV Sbjct: 6 VALKVAYDGTAFSGFQRQPGLRTVQGVLEEALARLTKETCQVKGAGRTDAGVHAEGQVVS 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F L ALN L +++L + V +QFH R+ A+ + Y Y R Sbjct: 66 FRTASSIPTPRLVPALNGLL--PPDVAVLAAAEVPEQFHPRYDAVSKVYRYTFFRRAVRC 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L + A +P+ LD E MR AA +L GRHDF F++ S +RT+ + G Sbjct: 124 PLTRFYALHVPEPLDVERMREAAAYLGGRHDFRAFQNTGRPVKSSVRTVFSCRLEEAGPF 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A FL+ +R G+L +G GK + + AL+ +R+ GP APP GL Sbjct: 184 LYFWIEADGFLYQMVRVIAGTLLEIGRGKLEPSVILAALEKGERQLLGPTAPPHGLCLVQ 243 Query: 244 VEYS 247 V+Y Sbjct: 244 VKYP 247 >gi|167840379|ref|ZP_02467063.1| tRNA pseudouridine synthase A [Burkholderia thailandensis MSMB43] Length = 270 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q S+E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDSLEAALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L TI++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFL--PSTIAVQWAKPMPDTFHARFAAYERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + LD + MR AA HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAGRTGWVHTPLDIDAMREAAGHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L L+++DR P PEGLY Sbjct: 179 DFIHFRFRASAFLHHMVRNLMGCLVAVGRGRYPASWLADVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|238651103|ref|YP_002916961.1| tRNA pseudouridine synthase A [Rickettsia peacockii str. Rustic] gi|259550439|sp|C4K2W2|TRUA_RICPU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238625201|gb|ACR47907.1| tRNA pseudouridine synthase A [Rickettsia peacockii str. Rustic] Length = 245 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 108/246 (43%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 CPSVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKAAY 245 >gi|163757847|ref|ZP_02164936.1| tRNA pseudouridine synthase A [Hoeflea phototrophica DFL-43] gi|162285349|gb|EDQ35631.1| tRNA pseudouridine synthase A [Hoeflea phototrophica DFL-43] Length = 255 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 141/250 (56%), Positives = 177/250 (70%), Gaps = 3/250 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+GSGY GWQRQ + SIQ +IE AI G+ V + GAGRTD+GVHA Q Sbjct: 1 MPRYRLDIEYDGSGYAGWQRQDDHPSIQQAIETAIHGFCGQAVSIRGAGRTDAGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL +W + A+NA+L+++ + ++IL V + F ARFSA RR Y+YRII R Sbjct: 61 VAHVDLENQWSDDTVRDAINAHLQMARERVAILAAREVPEDFDARFSATRRHYVYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APL +EK RA P+ LD E M AAQ LVGRHDFTTFRS+ CQA SP+R++D DV Sbjct: 121 RAPLVIEKNRALWSPRPLDAEAMHEAAQRLVGRHDFTTFRSVQCQADSPVRSLDRLDVTR 180 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LIEI ARSFLH QIRSF G+L+LVG+GKWT+ D++ AL+A+ RK CGP+A PE Sbjct: 181 GGFDGLIEIHATARSFLHNQIRSFAGTLRLVGEGKWTADDVQIALEARSRKACGPVAAPE 240 Query: 238 GLYFDSVEYS 247 GLYF V+Y Sbjct: 241 GLYFRQVDYD 250 >gi|229844824|ref|ZP_04464962.1| tRNA pseudouridine synthase A [Haemophilus influenzae 6P18H1] gi|229812205|gb|EEP47896.1| tRNA pseudouridine synthase A [Haemophilus influenzae 6P18H1] Length = 269 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + NA+L D I++ VD +FHARFSAI R Y Y + + Sbjct: 61 VHFETNAVRLEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSAIARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLFGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L ++R+ P A P+GLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|53716174|ref|YP_106286.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 23344] gi|76817905|ref|YP_335930.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710b] gi|121597592|ref|YP_991241.1| tRNA pseudouridine synthase A [Burkholderia mallei SAVP1] gi|126443551|ref|YP_001063441.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 668] gi|126456028|ref|YP_001076342.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106a] gi|134278539|ref|ZP_01765253.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 305] gi|167724493|ref|ZP_02407729.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei DM98] gi|167743453|ref|ZP_02416227.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 14] gi|167820639|ref|ZP_02452319.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 91] gi|167828999|ref|ZP_02460470.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 9] gi|167850474|ref|ZP_02475982.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei B7210] gi|167899069|ref|ZP_02486470.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 7894] gi|167907414|ref|ZP_02494619.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei NCTC 13177] gi|167915752|ref|ZP_02502843.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 112] gi|167923592|ref|ZP_02510683.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei BCC215] gi|226195622|ref|ZP_03791209.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pakistan 9] gi|237508302|ref|ZP_04521017.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei MSHR346] gi|242312379|ref|ZP_04811396.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106b] gi|254186230|ref|ZP_04892748.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pasteur 52237] gi|254194496|ref|ZP_04900928.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei S13] gi|254265540|ref|ZP_04956405.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710a] gi|254301278|ref|ZP_04968722.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 406e] gi|254359267|ref|ZP_04975539.1| tRNA pseudouridine synthase A [Burkholderia mallei 2002721280] gi|62901257|sp|Q62AJ2|TRUA_BURMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123597008|sp|Q3JKH3|TRUA_BURP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228685|sp|A1UZ38|TRUA_BURMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228686|sp|A3P7N2|TRUA_BURP0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228687|sp|A3NM70|TRUA_BURP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52422144|gb|AAU45714.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 23344] gi|76582378|gb|ABA51852.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710b] gi|121225390|gb|ABM48921.1| tRNA pseudouridine synthase A [Burkholderia mallei SAVP1] gi|126223042|gb|ABN86547.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 668] gi|126229796|gb|ABN93209.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106a] gi|134250323|gb|EBA50403.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 305] gi|148028454|gb|EDK86414.1| tRNA pseudouridine synthase A [Burkholderia mallei 2002721280] gi|157811288|gb|EDO88458.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 406e] gi|157933916|gb|EDO89586.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pasteur 52237] gi|169651247|gb|EDS83940.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei S13] gi|225932107|gb|EEH28107.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pakistan 9] gi|235000507|gb|EEP49931.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei MSHR346] gi|242135618|gb|EES22021.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106b] gi|254216542|gb|EET05927.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710a] Length = 270 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+++ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERSLAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFL--PPTVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAGRAGWVHTPLDVDAMREAAAHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ S+ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLAEVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|257899365|ref|ZP_05679018.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] gi|257837277|gb|EEV62351.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] Length = 248 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQRMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV ++FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRKVEIVSEEFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + A P LD ++ A L+G HDFT+F + +RTI +V Sbjct: 119 KPRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLYEVKYE 248 >gi|16273533|ref|NP_439786.1| tRNA pseudouridine synthase A [Haemophilus influenzae Rd KW20] gi|260580419|ref|ZP_05848248.1| tRNA pseudouridine synthase A [Haemophilus influenzae RdAW] gi|1174804|sp|P45291|TRUA_HAEIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1574492|gb|AAC23291.1| pseudouridylate synthase I (truA) [Haemophilus influenzae Rd KW20] gi|260093096|gb|EEW77030.1| tRNA pseudouridine synthase A [Haemophilus influenzae RdAW] Length = 269 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGTGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|297528514|ref|YP_003669789.1| tRNA pseudouridine synthase A [Geobacillus sp. C56-T3] gi|297251766|gb|ADI25212.1| tRNA pseudouridine synthase A [Geobacillus sp. C56-T3] Length = 258 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R II Y+G+ + G+Q Q ++QG E+ + + G V V +GRTD+GVHA Q Sbjct: 3 TRIKCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTKVRVAASGRTDAGVHAYGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD KALNA L D I + + D FHARFSA + Y Y++ T Sbjct: 63 VIHFDTSLSLSSEQWKKALNAQL--PDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAA 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P SL M A + L G HDFT+F S +RT+ +V + Sbjct: 121 ERDVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTLIEDRVRTMYRAEVKAD 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++E R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EGLY Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISMLLAAKDRRLAGPTAPAEGLY 240 Query: 241 FDSVEYS 247 V Y Sbjct: 241 LWRVYYE 247 >gi|222056725|ref|YP_002539087.1| tRNA pseudouridine synthase A [Geobacter sp. FRC-32] gi|254789637|sp|B9M6W5|TRUA_GEOSF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221566014|gb|ACM21986.1| tRNA pseudouridine synthase A [Geobacter sp. FRC-32] Length = 244 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q NG +IQ IE+++ + G+ V + +GRTD+GVHAL Sbjct: 1 MRNIKLIIEYDGTAYCGWQLQPNGITIQQVIEESLEKMLGQSVRLQSSGRTDAGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F ++ LN L I+I + S V F+ R AI + Y Y I + Sbjct: 61 VAVFKTQKDLPVRAFSDGLNCLL--PPDIAIRDASEVPLSFNPRADAISKHYRYTIYNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + L+ E M++ A H VG HDF FR+ +C A + IR + H V Sbjct: 119 RRSPLTRLNSWHLRGILNMELMQLGASHFVGEHDFAAFRASNCVAKTTIRRMFHVSVAKV 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I V FL +R G+L VG GK + + L DR G APP+GL Sbjct: 179 GDSVIIDVHGSGFLKNMVRVIAGTLVAVGQGKLDPSAIPGLLAGGDRSASGITAPPQGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LMEVFY 244 >gi|237653725|ref|YP_002890039.1| tRNA pseudouridine synthase A [Thauera sp. MZ1T] gi|237624972|gb|ACR01662.1| tRNA pseudouridine synthase A [Thauera sp. MZ1T] Length = 265 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 128/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY G + GWQ Q +G ++Q +E+A+ + GE V H AGRTD+GVHA Q Sbjct: 1 MRRIVLGLEYAGDAFCGWQSQAHGRTVQDVLERALAQIAGEPVRTHCAGRTDTGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + +NA L + + + V FHARF A R Y Y + Sbjct: 61 VAHFDTRAVRPASAWVRGVNALL--PPAVVVRWSTEVGDDFHARFLACERQYRYILHNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ GR +LD E M AAQ LVG HDF++FR+ CQA +P+R + V Sbjct: 119 TRPAMLAGRVGWYHPALDVERMAAAAQCLVGTHDFSSFRAAGCQAKTPVRVMHEARVVRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FLH IR+ VG+L VG G++ + + L+A+DR P P+GLY Sbjct: 179 GEYLLFDFRANGFLHHMIRNLVGALVYVGKGRYPVAWMRELLEARDRARAAPTFSPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LCGVAYP 245 >gi|160875946|ref|YP_001555262.1| tRNA pseudouridine synthase A [Shewanella baltica OS195] gi|189030142|sp|A9KTU7|TRUA_SHEB9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160861468|gb|ABX50002.1| tRNA pseudouridine synthase A [Shewanella baltica OS195] gi|315268141|gb|ADT94994.1| tRNA pseudouridine synthase A [Shewanella baltica OS678] Length = 261 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|24212681|sp|Q9ZCA3|TRUA_RICPR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|292572520|gb|ADE30435.1| tRNA pseudouridine synthase A [Rickettsia prowazekii Rp22] Length = 245 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 112/246 (45%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ + E V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + KA+N Y + + N +V FHARFSAI R Y+YRII R Sbjct: 61 VAHFDLSKYLEPYKIIKAIN-YFVRPYDVGVWNCELVSNNFHARFSAISRHYIYRIINRT 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L A+DRK GP AP GLY Sbjct: 180 YEEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FIKAEY 245 >gi|300114593|ref|YP_003761168.1| tRNA pseudouridine synthase A [Nitrosococcus watsonii C-113] gi|299540530|gb|ADJ28847.1| tRNA pseudouridine synthase A [Nitrosococcus watsonii C-113] Length = 259 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ QK ++Q ++E+A+ V E V V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGSNFSGWQSQKGVRTVQATLERALSTVANEPVTVITAGRTDAGVHAAAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L ++IL V++ FHARFSAI R Y Y ++ R+ Sbjct: 61 VHFDTTTFRLEHHWVFGGNANL--PPEVAILWAQPVNEAFHARFSAIARHYRYIVLNRRT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ R + L M+ A LVG HDF++FR+ CQA SP+R + H +V G Sbjct: 119 RPAIANRRVTWYCQPLSVTKMKEAGAFLVGEHDFSSFRAKACQAKSPVRNVHHLEVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ G L +G G+ E+ LQA+ R G A P+GLY Sbjct: 179 DWIIMDISANAFLHHMVRNIAGVLMAIGKGEQPPRWAEEVLQARCRAVGGVTARPDGLYL 238 Query: 242 DSVEYS 247 SV+Y Sbjct: 239 VSVDYP 244 >gi|329577713|gb|EGG59139.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467] Length = 249 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGAHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + IRTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKIRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|261868098|ref|YP_003256020.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413430|gb|ACX82801.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D11S-1] Length = 261 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQRQ+ +SIQ +E+AI +V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKHYFGWQRQEKVASIQAELERAISVVANEDIGIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L D I++ +V+ FHARFSA R Y Y + + Sbjct: 61 LHFETTAQRPEKAWSFGVNANL--PDDIAVRWAKVVEDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V G Sbjct: 119 RSAILPQGVTHYHLELDHQLMHGAGQALLGENDFSSFRAAQCQSNTPWRNVHHLNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWMKWLLEQKDRTLAAPTAKPEGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VNVIYP 244 >gi|304411873|ref|ZP_07393484.1| tRNA pseudouridine synthase A [Shewanella baltica OS183] gi|307303359|ref|ZP_07583114.1| tRNA pseudouridine synthase A [Shewanella baltica BA175] gi|304349733|gb|EFM14140.1| tRNA pseudouridine synthase A [Shewanella baltica OS183] gi|306913719|gb|EFN44141.1| tRNA pseudouridine synthase A [Shewanella baltica BA175] Length = 261 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETHAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R I +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNIHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|257083304|ref|ZP_05577665.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] gi|256991334|gb|EEU78636.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] Length = 246 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTNKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|298293826|ref|YP_003695765.1| tRNA pseudouridine synthase A [Starkeya novella DSM 506] gi|296930337|gb|ADH91146.1| tRNA pseudouridine synthase A [Starkeya novella DSM 506] Length = 250 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 129/251 (51%), Positives = 169/251 (67%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q G+S+QG++ +A+ +TGE V VHGAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFVGWQIQAEGTSVQGALAQAVTRLTGEQVAVHGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH +L R+W P + ALNA+L+ I++L+ FHARFSA R Y+YRII R+ Sbjct: 61 VAHVELSRDWRPDTVRDALNAHLR-PHPIAVLSAERAADDFHARFSATGRRYVYRIIARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 LALE+ RAW + + LD M A LVGRHDFTTFR++ CQA+SP++T+D +V Sbjct: 120 PDLALERNRAWRVLRPLDVAGMAEGAARLVGRHDFTTFRAVGCQAASPLKTLDRLEVEEV 179 Query: 180 --FGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G +EIRV ARSFLH Q+RS VG+L VG+G WT D+ AL+A+DR CGP+AP Sbjct: 180 ALEGPGMEIRVHAAARSFLHHQVRSMVGTLVKVGEGAWTPDDVTAALEAKDRTRCGPMAP 239 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 240 SAGLYLAEVTY 250 >gi|322418344|ref|YP_004197567.1| tRNA pseudouridine synthase A [Geobacter sp. M18] gi|320124731|gb|ADW12291.1| tRNA pseudouridine synthase A [Geobacter sp. M18] Length = 250 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q NG ++Q +E A+ + GE +H +GRTD+GVHA Sbjct: 1 MRNIKLIIEYDGTAYSGWQVQPNGVTVQAVMEDALSRMLGERTPLHASGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + LN L I++ + V FH RF A + Y Y ++ Sbjct: 61 VACFKTGKTMPLRAFREGLNTLL--PSDIAVREAAEVPLGFHPRFDAQAKHYRYTMLLDD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + AW I LD E MR A VG HDF FR +C A + +R I ++ Sbjct: 119 LRSPLSRHTAWRIKGKLDLEAMRAACTVFVGEHDFAAFRGANCAAKTTVRRIYSMELVQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + FL +R G+L VG G+ + D+ + L+ DR+ G PP+GL Sbjct: 179 DRLLHLDIKGSGFLKNMVRIITGTLVDVGQGRLGAADVARLLKGGDRQNAGMTVPPQGLC 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LMRVFYP 245 >gi|312904650|ref|ZP_07763805.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|310632002|gb|EFQ15285.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] Length = 249 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLVRMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLVGPTAHPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLAEVKYE 248 >gi|157829158|ref|YP_001495400.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933887|ref|YP_001650676.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Iowa] gi|166228760|sp|A8GU17|TRUA_RICRS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030139|sp|B0BVL0|TRUA_RICRO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157801639|gb|ABV76892.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908974|gb|ABY73270.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Iowa] Length = 245 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 109/246 (44%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ GAGRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFVRPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKAAY 245 >gi|126174949|ref|YP_001051098.1| tRNA pseudouridine synthase A [Shewanella baltica OS155] gi|166229833|sp|A3D666|TRUA_SHEB5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125998154|gb|ABN62229.1| tRNA pseudouridine synthase A [Shewanella baltica OS155] Length = 261 Score = 297 bits (762), Expect = 6e-79, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETQAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|325678788|ref|ZP_08158386.1| tRNA pseudouridine synthase A [Ruminococcus albus 8] gi|324109292|gb|EGC03510.1| tRNA pseudouridine synthase A [Ruminococcus albus 8] Length = 250 Score = 297 bits (762), Expect = 6e-79, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 127/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+GSGY GWQRQ N ++Q +E AIF +TGE VVV G RTD+GVHA Sbjct: 1 MRNFKVTLAYDGSGYHGWQRQSNALAVQEVVENAIFKLTGEKVVVQGCSRTDAGVHARMY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +L P + LN++L D IS++ + FHAR+ + Y Y + + Sbjct: 61 VLSMELESTITPRGIQLGLNSWL--PDDISVIGCEECEAGFHARYHCKGKEYEYIVHNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K A+ +D + AA+ VG HDF F S C +RTI FDV Sbjct: 119 IKDPFLKNTAFRNTYPIDEVLLDKAAKDYVGEHDFKAFCSTACDKEITVRTIYRFDVRRE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+ V FL+ +R VG+L + +GK + + + ++++DR + G PP+GLY Sbjct: 179 GELVIFTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRIIESKDRTKAGKTVPPQGLY 238 Query: 241 FDSVEYS 247 + V Y Sbjct: 239 LNKVYYD 245 >gi|307131844|ref|YP_003883860.1| tRNA pseudouridine synthase A [Dickeya dadantii 3937] gi|306529373|gb|ADM99303.1| tRNA pseudouridine synthase A [Dickeya dadantii 3937] Length = 276 Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+QG +E A+ V E + V AGRTD+GVHA QV Sbjct: 14 KIALGIEYDGSRYYGWQRQAEVDSVQGCLEAALSQVANERIDVFCAGRTDAGVHATGQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD FHARFSA R Y Y I R+ Sbjct: 74 HFTTRAARKDAAWTMGVNANL--PPDIAVRWVKTVDDAFHARFSATARRYRYVIYNRRFR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R + H V G+ Sbjct: 132 PAILSRGVTHYYLPLDAERMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVARQGD 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + + L A+DR A +GLY Sbjct: 192 YVVVDIKANAFVHHMVRNIVGSLMEIGCGNQSENWMAELLAAKDRTLAAATAKADGLYLV 251 Query: 243 SVEYS 247 SV+Y Sbjct: 252 SVDYP 256 >gi|329849464|ref|ZP_08264310.1| tRNA pseudouridine synthase A [Asticcacaulis biprosthecum C19] gi|328841375|gb|EGF90945.1| tRNA pseudouridine synthase A [Asticcacaulis biprosthecum C19] Length = 257 Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 120/247 (48%), Positives = 159/247 (64%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IEY+G Y G+Q Q + ++Q S+E+AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYRCLIEYDGRPYKGFQAQGDHPTVQASLERAILGFSGEALRITAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FDL + + + A+NA+L + +S+L VD +F ARFSA R YLYRI+TR+ Sbjct: 61 VVSFDLSKAFKADTVRDAMNAFLAR-EPVSVLAAEQVDDEFSARFSATGRMYLYRILTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+ GR W + K LD E M AA+ LVG HDFTTFR + CQA SP++T+D V F Sbjct: 120 APPALDMGRVWHVKKPLDAEVMAQAAKALVGTHDFTTFRHVECQAKSPVKTLDIARVKRF 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS G+L G G+W D+ +AL A+DR CG +APPEGLY Sbjct: 180 GDEIHLVFAARSFLHRQVRSMTGTLVEAGIGRWDIADVAEALAAKDRAACGQVAPPEGLY 239 Query: 241 FDSVEYS 247 V Y Sbjct: 240 LTHVTYE 246 >gi|323703112|ref|ZP_08114766.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] gi|323531889|gb|EGB21774.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] Length = 245 Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQR + +IQG IE + +TGE + + G+GRTD+GVHAL Sbjct: 1 MRNIKLTIQYDGSRYRGWQRLGDTDVTIQGKIEAVLSRMTGEEIEIFGSGRTDTGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + L YL + I + + V +FHAR++ + YLY+I Sbjct: 61 QVANFKTNSNMSTGEIMDYLYHYL--PEDIVVTRVEEVSDRFHARYNVKSKKYLYKIWNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + +P+ L + M+ AA L+G HDF +FR+ + S ++TI D+ Sbjct: 119 KYHDPFRRKFVHHVPEPLQIKAMQKAAAFLIGEHDFASFRASKSKKKSSVKTIYAIDIVK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI+I V FLH +R VG+L VG G +++ L +DR GP AP +GL Sbjct: 179 KDPLIKITVHGNGFLHNMVRIIVGTLVEVGLGHMRPEQVKEILSKKDRSAAGPTAPAKGL 238 Query: 240 YFDSVEY 246 Y VEY Sbjct: 239 YLLEVEY 245 >gi|68249766|ref|YP_248878.1| tRNA pseudouridine synthase A [Haemophilus influenzae 86-028NP] gi|81335806|sp|Q4QL79|TRUA_HAEI8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|68057965|gb|AAX88218.1| tRNA pseudouridine synthase A [Haemophilus influenzae 86-028NP] Length = 269 Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|332982675|ref|YP_004464116.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON] gi|332700353|gb|AEE97294.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON] Length = 245 Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + ++Y+G+ Y GWQ QKN +IQ +E+AI +TG+ V AGRTD GVHAL Sbjct: 1 MERNIKLTLQYDGTAYAGWQYQKNALTIQQVVEEAIESLTGQHSTVIAAGRTDRGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F ALNA L + I +++ V FHARF A + Y Y I Sbjct: 61 QVTNFKTESNIPTDRWLYALNAVL--PEDIRVIDAQDVLPSFHARFDAKGKLYRYIIWNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + + + LD + M+ AA + VG HDF++F++ +R I + + Sbjct: 119 PYSSALLRNFSLHVARPLDADAMKRAALYFVGTHDFSSFQASGSTVRDTVRNIWDISIQT 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +I I + FL+ +R VG+L VG GK T+ D + L+A+DRK G A P GL Sbjct: 179 EGKMISISISGDGFLYNMVRIMVGTLIDVGIGKITACDAKLILEARDRKRAGKTAGPHGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLVEVYY 245 >gi|253577209|ref|ZP_04854529.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786 str. D14] gi|251843453|gb|EES71481.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786 str. D14] Length = 261 Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 92/257 (35%), Positives = 132/257 (51%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ YFG+Q Q G+++Q IE AI +TGE V +HG+GRTD+GVHA +Q Sbjct: 1 MRNLLMTVSYDGTNYFGFQTQPGGNTVQDHIEGAIRQLTGETVKIHGSGRTDAGVHARQQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HF C ALNA L I +L V FH+R SA R++Y Y I T + Sbjct: 61 PFHFHTDSRIPVERWCLALNARL--PSDIRVLTAREVPLTFHSRHSAKRKTYRYTINTNR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--- 177 P ++ + P L+ + M+ + +LVG HDFT+F S S +RTI + Sbjct: 119 FPDVFQRNYQFHHPGQLNVDAMQASLPYLVGTHDFTSFASRQSTKLSHVRTIYDARIVVD 178 Query: 178 -------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + ++ V FL +R VG+L +G+GK T ++ L+A+DR Sbjct: 179 SLAKIPGTTGQGIVHFYVTGSGFLQHMVRIIVGTLIEIGEGKRTPESIQAILEAKDRTAA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 GP A +GL SVEY Sbjct: 239 GPTAESKGLMLWSVEYE 255 >gi|237746730|ref|ZP_04577210.1| tRNA pseudouridine synthase A [Oxalobacter formigenes HOxBLS] gi|229378081|gb|EEO28172.1| tRNA pseudouridine synthase A [Oxalobacter formigenes HOxBLS] Length = 264 Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 96/250 (38%), Positives = 137/250 (54%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+G+ GWQ Q +G ++Q +E AI T + AGRTD+GVHA Q Sbjct: 4 MKRIALGIEYDGTGWRGWQTQPDGMTVQDQLEAAIRQFTRMDMATTCAGRTDAGVHATEQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD---KQFHARFSAIRRSYLYRII 117 V H D E +PV + +N+YL +I++ V FHAR SAI R Y Y + Sbjct: 64 VVHLDTGLERLPVSWVRGINSYL--PSSIAVRWACEVPGGKDGFHARSSAIARRYRYLVY 121 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L K RA + + LD E MR A L+G HDF+ FR+ CQ+ +P++T++ + Sbjct: 122 NSPVRSPLWKNRAGWVFRPLDLEWMREGAGFLLGEHDFSAFRAAECQSITPVKTMNGIGI 181 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GNLI A +FLH IR+ VGSL +VG G +++ L+++DR + P P+ Sbjct: 182 EKQGNLIVFTFEANAFLHHMIRNIVGSLIVVGKGNRPPKWMKELLESRDRSQAAPTFMPD 241 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 242 GLYLSRVFYE 251 >gi|117925388|ref|YP_866005.1| tRNA pseudouridine synthase A [Magnetococcus sp. MC-1] gi|117609144|gb|ABK44599.1| tRNA pseudouridine synthase A [Magnetococcus sp. MC-1] Length = 270 Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +E++GS + GWQ Q+N S+Q ++E+A+ + E + VHG+GRTD+GVHA QV Sbjct: 13 QRFRITVEFDGSAFSGWQSQQNAPSVQQALEQALAPLHNEPIRVHGSGRTDAGVHATGQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + LN + +I++L V + FHAR+ A R YLYRI TR+ Sbjct: 73 AHFDAPAHRDAATYLRILNV--RTPHSIAVLACQPVAESFHARYDAYYRQYLYRINTRKI 130 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ALE+ R W P LD E + A+ L+G HDF++FR+ CQ+ SP++ + G Sbjct: 131 PPALERSRVWHYPYLLDAERLAEASALLLGTHDFSSFRAAGCQSKSPVKFMRLIQWQQRG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ + A +FL +R+ VG+L LVG G W + + L A+DR + GP AP GLY Sbjct: 191 DEWQVSIGANAFLQHMVRNLVGTLVLVGKGDWPVARVAELLAARDRVQAGPTAPAWGLYL 250 Query: 242 DSVEYS 247 + Y Sbjct: 251 THICYP 256 >gi|217972794|ref|YP_002357545.1| tRNA pseudouridine synthase A [Shewanella baltica OS223] gi|254764864|sp|B8EEB7|TRUA_SHEB2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217497929|gb|ACK46122.1| tRNA pseudouridine synthase A [Shewanella baltica OS223] Length = 261 Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETHAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|28212149|ref|NP_783093.1| tRNA pseudouridine synthase A [Clostridium tetani E88] gi|38258761|sp|Q890R5|TRUA2_CLOTE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|28204593|gb|AAO37030.1| tRNA pseudouridine synthase A [Clostridium tetani E88] Length = 248 Score = 297 bits (761), Expect = 9e-79, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 134/250 (53%), Gaps = 5/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M R + +EY+G+ Y GWQ+QK+ + +IQ SIEKAI T E V + G+ RTD+GVHA Sbjct: 1 MARNVRLKVEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEATKEEVELIGSSRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L A+F ALN +L + I IL V +FH+RF I ++Y+Y+I+ Sbjct: 61 LAYTANFKTCSTIPGEKFKHALNRFL--PEDIVILESEEVPMEFHSRFDCIGKTYVYKIL 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R +++ + + LD +M A++ L+G HDF F+ + +RTI + ++ Sbjct: 119 NRPLFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDFNAFKKSGGNLKTTVRTITNINI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +++EI V FL+ +R G+L VG + D+ LQ++DR + G AP Sbjct: 179 LKSNDIVEIHVSGDGFLYNMVRIISGTLIEVGLSRRKPEDISIILQSKDRCKAGMCAPAR 238 Query: 238 GLYFDSVEYS 247 GLY + Y+ Sbjct: 239 GLYLKELFYN 248 >gi|51474025|ref|YP_067782.1| tRNA pseudouridine synthase A [Rickettsia typhi str. Wilmington] gi|62901283|sp|Q68VQ6|TRUA_RICTY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|51460337|gb|AAU04300.1| Pseudouridine synthase [Rickettsia typhi str. Wilmington] Length = 245 Score = 297 bits (761), Expect = 9e-79, Method: Composition-based stats. Identities = 109/246 (44%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ +GE V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTHFSGWQRQAGVLSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + P + KA+N Y + + N +V FHARFSA R Y+YRI+ R Sbjct: 61 IAHFDLSKYLEPYKIIKAIN-YFVRPYAVGVWNCELVSNNFHARFSATSRHYIYRIVNRT 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ R W I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRVWWISAPLDVLAMQQAATYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W ++ L A+DRK GP AP GLY Sbjct: 180 YEEIKLYLSAPSFLHYMVRNIVGSLVLVGKNIWQVEQIKNVLDAKDRKVAGPTAPAFGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FIKAEY 245 >gi|145630935|ref|ZP_01786711.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] gi|144983402|gb|EDJ90878.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] Length = 269 Score = 297 bits (761), Expect = 9e-79, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVYHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|225570923|ref|ZP_03779946.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM 15053] gi|225160385|gb|EEG73004.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM 15053] Length = 282 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 125/246 (50%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I Y+G+ Y GWQ Q NG +I+ + + +TGE + V GA RTDSGVHAL V Sbjct: 37 RRIRLVIAYDGTDYCGWQIQPNGITIEEVLNGVLTKLTGEDIHVIGASRTDSGVHALGNV 96 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF-SAIRRSYLYRIITRQ 120 A FD P + ALN L I I+ V +H R+ + ++Y Y I Sbjct: 97 AVFDTASSIPPERMAYALNQRL--PKDIVIVRSDEVPAGWHPRYRDVVIKTYEYHIYNAP 154 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L++ + I L+ E MR A++L+G HDF +F ++ +RT+ ++S Sbjct: 155 VQNPLKRRTSTHISFPLNVEKMREGAKYLIGEHDFASFCNVRTSVKDTVRTVTELRIDSD 214 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +R+ FL+ +R G+L VG G + +++ L+A++R G PP GL Sbjct: 215 GPEIIMRITGNGFLYNMVRIIAGTLIRVGRGFYEPEKVKEILEAKERTGAGVTVPPNGLV 274 Query: 241 FDSVEY 246 ++Y Sbjct: 275 LVEIDY 280 >gi|1644206|dbj|BAA10987.1| unknown [Bacillus subtilis] Length = 247 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 132/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + + + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAERWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ ++MR AA+H +G HDFT+F + + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHPIGTHDFTSFCAAKTEVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + +++ L+A+DR+ AP GL Sbjct: 179 TADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAERTAPGHGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLWNVYYD 246 >gi|259500923|ref|ZP_05743825.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335] gi|302190624|ref|ZP_07266878.1| tRNA pseudouridine synthase A [Lactobacillus iners AB-1] gi|309803645|ref|ZP_07697735.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d] gi|309804945|ref|ZP_07699003.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c] gi|309806696|ref|ZP_07700691.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b] gi|309808529|ref|ZP_07702428.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a] gi|312871160|ref|ZP_07731258.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a] gi|312872668|ref|ZP_07732733.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1] gi|315653995|ref|ZP_07906911.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195] gi|259167617|gb|EEW52112.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335] gi|308164243|gb|EFO66500.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d] gi|308165705|gb|EFO67930.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c] gi|308166876|gb|EFO69060.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b] gi|308168357|gb|EFO70476.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a] gi|311091710|gb|EFQ50089.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1] gi|311093174|gb|EFQ51520.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a] gi|315488691|gb|EFU78337.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195] Length = 260 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALM--PRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QNGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLYHVFYD 247 >gi|255654196|ref|ZP_05399605.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-23m63] gi|296449765|ref|ZP_06891534.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296877828|ref|ZP_06901851.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] gi|296261363|gb|EFH08189.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296431170|gb|EFH16994.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] Length = 243 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+YNG Y GWQ+Q + IQG+IE+AI+ +T E V + G+GRTDSGVHA+ Q Sbjct: 1 MRNIKITIQYNGKNYCGWQKQLDSLGIQGTIERAIYDITKEKVSLIGSGRTDSGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F + ALNA L IS+++ V+ FH+R+SA ++Y Y + + Sbjct: 61 IANFKTNSSISIESIPMALNAKL--PKDISVIDACEVNDDFHSRYSAKGKTYKYLVYNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ + LD + M A+ L+G HDF F S +RTI D+ Sbjct: 119 FRNPILSEISYQVKYELDFDKMCSEAKLLLGTHDFKGFMSSGSSVKDTVRTIYDIDIIRK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI + FL+ +R VG+L +G G+ +Q++ R CG AP +GL+ Sbjct: 179 DDLITFEISGNGFLYNMVRIIVGTLVDIGRGRIN-EPFLDIIQSKTRSRCGHTAPAQGLF 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LKKVHY 243 >gi|192361259|ref|YP_001982227.1| tRNA pseudouridine synthase A [Cellvibrio japonicus Ueda107] gi|190687424|gb|ACE85102.1| tRNA pseudouridine synthase A [Cellvibrio japonicus Ueda107] Length = 299 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 135/248 (54%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY G+ + G+Q Q NG ++Q S+EKA+ +V E + + AGRTD+GVHA Sbjct: 28 MRRVALGVEYKGADFHGFQVQPNGVKTVQQSLEKALSIVADEPITLVCAGRTDAGVHATN 87 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + + L +L DTI I V FHARFSA R+Y Y + Sbjct: 88 QVIHFDTLAQRPLKAWMRGLGPHL--PDTIGIRWAQDVSPGFHARFSAQSRTYRYLMSDG 145 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL + + LD MR A L+G HDFT+FR+ CQA SP+R I++ + Sbjct: 146 ASSPALLHDQVSWSSRPLDVALMRQGAACLIGEHDFTSFRATQCQAKSPVRRIEYLHLVR 205 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LI + + A +FLH +R+ VG L VG G + + L A+DR G A P GL Sbjct: 206 RGELIVMEIRANAFLHHMVRNIVGVLMQVGAGFKKPSWVGDVLAARDRTAAGATAKPNGL 265 Query: 240 YFDSVEYS 247 Y +V+Y Sbjct: 266 YLVAVDYP 273 >gi|99082224|ref|YP_614378.1| tRNA pseudouridine synthase A [Ruegeria sp. TM1040] gi|122984147|sp|Q1GE00|TRUA_SILST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|99038504|gb|ABF65116.1| Pseudouridylate synthase [Ruegeria sp. TM1040] Length = 259 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 116/251 (46%), Positives = 162/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W P L +ALN +LK ++I++ ++VD ++HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDLEKNWDPFRLSEALNYHLK-PAPVAIVDAALVDDEWHARFSAVERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP ++G+ W I LD M+ A L+G HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDEGQVWQIKHDLDVAAMQAGANMLLGNHDFTTFRSSICQAASPVKTLDELRVERV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLARVGYP 250 >gi|219870357|ref|YP_002474732.1| tRNA pseudouridine synthase A [Haemophilus parasuis SH0165] gi|254789638|sp|B8F382|TRUA_HAEPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219690561|gb|ACL31784.1| tRNA pseudouridine synthase A [Haemophilus parasuis SH0165] Length = 262 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+G Y GWQRQ+ S+Q +E+A+ ++ V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGCRYCGWQRQQYVDSVQQRLEEALSVIANSSCEVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD C NA+L + I + V FHARFSA+ R Y Y I + Sbjct: 61 VHFDTDVNRPMQSWCLGTNAHL--PEDIVVKWAIGVSDDFHARFSALARRYRYVIYNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ SLD E M A Q L+G +DF++FR+ CQ+ +P R + H V+ Sbjct: 119 RSAILPKGISHYHYSLDHEKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLIVSRHQ 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 179 DYIILDIQANAFVHHMVRNIVGSLIEVGRGDKPVEWIKWLLEKRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VEVIYP 244 >gi|187933357|ref|YP_001884507.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund 17B] gi|238691608|sp|B2TIK9|TRUA_CLOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187721510|gb|ACD22731.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund 17B] Length = 244 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIE++G+ + GWQRQ ++QG +EKAI +TGE + +G+ RTD GVHA Sbjct: 1 MRNIKLIIEFDGTNFCGWQRQIKDRTVQGCLEKAILKITGEKSLTNGSSRTDGGVHAKAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +ALN L D I+++ VD FHAR+S+ + Y Y I+ R Sbjct: 61 VANFITNSSIPGEKFREALNTKL--PDDIAVIKSEEVDMDFHARYSSKGKMYSYTIVNRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L+ K + K L+ E+M+ A + +G+HDF F S A + +RTI F + Sbjct: 119 EKLSFGKQYVHHVRKELNVEDMKKACECFIGKHDFKAFMSPGSSAKTTVRTIQEFYIEKN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I+I + A FL+ +R VG+L +G GK D++ + RK G PP GL Sbjct: 179 EDVIKIFISADGFLYNMVRIIVGTLINIGTGKTKLEDVDNIINDGIRKRSGMCVPPNGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|148828368|ref|YP_001293121.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittGG] gi|166228702|sp|A5UIY2|TRUA_HAEIG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148719610|gb|ABR00738.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittGG] Length = 269 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAIRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|300857214|ref|YP_003782198.1| tRNA pseudouridine synthase A [Clostridium ljungdahlii DSM 13528] gi|300437329|gb|ADK17096.1| tRNA pseudouridine synthase A [Clostridium ljungdahlii DSM 13528] Length = 244 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ Y GWQRQ N +IQ +E+AI +TG V GA RTD+GVHA Sbjct: 1 MKNVMLTIEYDGTNYSGWQRQNNAMTIQQRLEEAIKKITGNFSEVIGASRTDAGVHARGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + ALN L I +LN VD FH+R+ ++ + Y+Y I+T Sbjct: 61 VCNFFTNSKMPSPNFKMALNGVL--PKDIVVLNAREVDNSFHSRYHSLGKKYVYTIVTGN 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + LD + M+ A ++ +G HDF+ F+ A S +RT+ + Sbjct: 119 NRPVIGRQYVYYFRRKLDIDKMKNACKYFIGTHDFSAFKKKGSSAKSSVRTVKELTIAQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 NLI+ +V FL+ +R VG+L VG G++T ++ L ++DR + G P GL Sbjct: 179 DNLIKFSIVGDGFLYNMVRIIVGTLLEVGLGRFTPEYVKDILDSKDRSKAGKPVPALGLC 238 Query: 241 FDSVEY 246 + + Y Sbjct: 239 LEKIFY 244 >gi|259502563|ref|ZP_05745465.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041] gi|259169515|gb|EEW54010.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041] Length = 256 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 134/251 (53%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q + +++ ++ A+ + V V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKHPDPPVSVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + + KALN+ L I + VD+ FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDIPYQLSDEAMRKALNSLL--PLDILVKKAERVDENFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ +D E MR+AA+ +G HDFT+F + QA S +RT++ V Sbjct: 119 QGDFVDPFKRNYTAHYKVPVDIEKMRLAAKDFIGEHDFTSFVASGSQAKSNVRTVEKITV 178 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N N + FL+ QIR V L VG G+ +D+++ L A+DR + AP Sbjct: 179 NRDPAQNEVVFEFTGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY SV+Y Sbjct: 239 ASGLYLVSVDY 249 >gi|301170402|emb|CBW30008.1| pseudouridylate synthase I [Haemophilus influenzae 10810] Length = 269 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDTEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|145637534|ref|ZP_01793192.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittHH] gi|145269340|gb|EDK09285.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittHH] Length = 269 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|145627788|ref|ZP_01783589.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.1-21] gi|144979563|gb|EDJ89222.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.1-21] Length = 269 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHEAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|325913236|ref|ZP_08175605.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B] gi|325477500|gb|EGC80643.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B] Length = 260 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALM--PRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QHGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLYHVFYD 247 >gi|311070796|ref|YP_003975719.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942] gi|310871313|gb|ADP34788.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942] Length = 247 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 133/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 ++ I Y+G + G+Q Q ++Q +EKA+ ++ + V V +GRTDSGVHA Sbjct: 1 MKMKCTISYDGHLFNGYQVQPGKRTVQAELEKALAILHKSEDKVPVISSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L I++ D FHARFSAI++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAERWPYALNALL--PGDIAVKTAEHADDGFHARFSAIKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ + MR A++HL+G HDFT+F S + + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQKMREASEHLIGTHDFTSFCSANTEVRDKVRTIYELDWTD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+V FL+ +R G+L VG GK+++ D++ L A+DR+ G AP GL Sbjct: 179 TDDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSADDVKGMLDAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 239 YLWHVYYD 246 >gi|309809150|ref|ZP_07703023.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D] gi|308170595|gb|EFO72615.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D] Length = 260 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALM--PRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QNGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQQARNTAPASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLYHVFYD 247 >gi|329297440|ref|ZP_08254776.1| tRNA pseudouridine synthase A [Plautia stali symbiont] Length = 270 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 9 KLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVANHPVNVFCAGRTDAGVHGTGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N+ L D I++ + V + FHARFSA R Y Y I ++ Sbjct: 69 HFETTLSRADSAWTLGVNSNL--PDDIAVRWVKAVPETFHARFSATARRYRYVIYNQRLR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 127 PAILGKGITHFYHPLDAEKMHRAAQALLGENDFTSFRAVQCQSRTPWRNVMHLYVTRQGP 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G T + L A+DR A EGLY Sbjct: 187 YVIVDIKANAFVHYMVRNIVGSLLEIGCGNQPETWMATLLAAKDRTLAAATAKAEGLYLV 246 Query: 243 SVEYS 247 +V+Y Sbjct: 247 AVDYP 251 >gi|319897314|ref|YP_004135510.1| tRNA pseudouridine synthase a [Haemophilus influenzae F3031] gi|317432819|emb|CBY81184.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3031] Length = 269 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|310768198|gb|ADP13148.1| tRNA pseudouridine synthase A [Erwinia sp. Ejp617] Length = 271 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH QV Sbjct: 12 KLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADRPIAVFCAGRTDAGVHGTGQVV 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 72 HFETTAQRKDAAWTLGVNANL--PADIAVRWVKAVADDFHARFSATARRYRYVIYNQRLR 129 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G Sbjct: 130 PAILAGGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLNVSRHGA 189 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L A+DRK A EGLY Sbjct: 190 YVVVDIKANAFVHHMVRNIVGSLIEIGCGNQPEGWMRELLVAKDRKLAAATARAEGLYLV 249 Query: 243 SVEYS 247 +V+Y Sbjct: 250 AVDYP 254 >gi|251788988|ref|YP_003003709.1| tRNA pseudouridine synthase A [Dickeya zeae Ech1591] gi|247537609|gb|ACT06230.1| tRNA pseudouridine synthase A [Dickeya zeae Ech1591] Length = 276 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+QG +E A+ V + V AGRTD+GVHA QV Sbjct: 14 KIALGIEYDGSRYYGWQRQAEVDSVQGCLEAALSQVANARIDVFCAGRTDAGVHATGQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD+ FHARFSA R Y Y I R+ Sbjct: 74 HFTTHAVRKDAAWTMGVNANL--PPDIAVRWVKTVDEAFHARFSATARRYRYVIYNRRFR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R + H V G+ Sbjct: 132 PAILSQGVTHYYLPLDAERMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVTRLGD 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L A+DR A +GLY Sbjct: 192 YVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPENWMAELLAAKDRTLAAATAKADGLYLV 251 Query: 243 SVEYS 247 +V+Y Sbjct: 252 AVDYP 256 >gi|17546704|ref|NP_520106.1| tRNA pseudouridine synthase A [Ralstonia solanacearum GMI1000] gi|42559848|sp|Q8XXX8|TRUA_RALSO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17429003|emb|CAD15687.1| probable trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum GMI1000] Length = 274 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 92/251 (36%), Positives = 138/251 (54%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTELVRDPFSWVRGTNAFL--PPTVAVRWAQAMPEDFHARFSAHRRTYYYALTYGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G+A + +SLD M AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLEGKAGYVTLPPGQSLDVTAMHEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSTE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G GK + + + L A+DRK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPAAWMGEVLAARDRKAAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 239 DGLYLAEVGYP 249 >gi|293395134|ref|ZP_06639420.1| tRNA pseudouridine synthase A [Serratia odorifera DSM 4582] gi|291422311|gb|EFE95554.1| tRNA pseudouridine synthase A [Serratia odorifera DSM 4582] Length = 270 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ +S+QG +E+A+ V VVV AGRTD+GVHA QV Sbjct: 10 KIALGIEYDGSRYYGWQRQQEVASVQGCLEQALSKVADAPVVVFCAGRTDAGVHATGQVV 69 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N +L I++ +S V + FHARFSA R Y Y I + Sbjct: 70 HFETTARRKDAAWTMGVNTHL--PPDIAVRWVSEVREDFHARFSATARRYRYLIFNHRYR 127 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD + M+ AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 128 PAVLQQGMTHFYHPLDADRMQRAAQALLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHGQ 187 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + + L +DR A +GLY Sbjct: 188 YIVVDIKANAFVHHMVRNIVGSLMEIGCGNQDENWMAELLALKDRNLAAATAKADGLYLV 247 Query: 243 SVEYS 247 +V+Y Sbjct: 248 AVDYP 252 >gi|319776538|ref|YP_004139026.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3047] gi|329124048|ref|ZP_08252595.1| tRNA pseudouridine synthase A [Haemophilus aegyptius ATCC 11116] gi|317451129|emb|CBY87362.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3047] gi|327467473|gb|EGF12971.1| tRNA pseudouridine synthase A [Haemophilus aegyptius ATCC 11116] Length = 269 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHRAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4] Length = 255 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 133/248 (53%), Gaps = 5/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +EY+GS Y GWQ+Q N ++IQG +E +F + GE + VHG+GRTD+GVHA QV Sbjct: 4 NIRITLEYDGSRYDGWQKQGNTDNTIQGKLENVLFRMAGEEIEVHGSGRTDAGVHARGQV 63 Query: 62 AHFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A+F + E P + LN YL D I +L+ IV ++FH+R SA ++Y Y + T Sbjct: 64 ANFHINAEICPDGEAAREYLNRYL--PDDIRVLSAKIVPERFHSRLSATSKTYGYYVETG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 E+ + K LD + MR AA+ L+G HDF +F + S +R ID + Sbjct: 122 DKKNVFERKYVYGCGKKLDVKAMRQAAEFLIGEHDFKSFCANRRMKKSTVRRIDEIRIVE 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +E FL+ +R G+L VG G +++ + A++R G APPEGL Sbjct: 182 HGTKLEFLYTGNGFLYNMVRILTGTLLEVGSGTRRPEKMKEIIAAKNRDMAGRTAPPEGL 241 Query: 240 YFDSVEYS 247 + V Y Sbjct: 242 FLLHVGYE 249 >gi|172056172|ref|YP_001812632.1| tRNA pseudouridine synthase A [Exiguobacterium sibiricum 255-15] gi|229470753|sp|B1YH83|TRUA_EXIS2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171988693|gb|ACB59615.1| tRNA pseudouridine synthase A [Exiguobacterium sibiricum 255-15] Length = 249 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+Y+G+ Y G+Q Q NG +IQ +EK + + V V G+GRTD+ VHA Q Sbjct: 1 MRRFKCTIQYDGTDYSGYQVQPNGLTIQEVLEKTLGRMHKHPVKVIGSGRTDARVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P + KALN L D I + + V F AR+ + + Y Y + R+ Sbjct: 61 VIHFDTELSIAPASMVKALNTLL--PDDIRVRDCKEVASDFEARYDVVGKEYRYFV--RR 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + ++ LIP SLD +R+ HLVG HDF++F + + +RTI ++ Sbjct: 117 TENAFRRHQSVLIPYSLDVAQIRLGLAHLVGTHDFSSFCVAKTETDNRVRTIYEAELIEQ 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + R FL+ QIR VG+L VG G++ D+++ L+A+DR G APP GLY Sbjct: 177 GEELIFRFQGSGFLYNQIRIMVGTLLDVGRGRFAPDDIKRMLEAKDRNVAGVTAPPHGLY 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LWEVFYP 243 >gi|145633047|ref|ZP_01788779.1| tRNA pseudouridine synthase A [Haemophilus influenzae 3655] gi|144986273|gb|EDJ92852.1| tRNA pseudouridine synthase A [Haemophilus influenzae 3655] Length = 269 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|299066408|emb|CBJ37593.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum CMR15] Length = 274 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 139/251 (55%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G ++ AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVVLPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VIHLDTDLVRDPFSWVRGTNAFL--PPTVAVRWAQAMPEDFHARFSAHRRTYYYALTYGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G+A + +SLD M AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLEGKAGYVTLPPGQSLDVAAMHEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G GK + + + L A++RK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPAAWMGEVLAARERKAAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 239 DGLYLAEVGYP 249 >gi|145639258|ref|ZP_01794864.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittII] gi|145271561|gb|EDK11472.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittII] gi|309751137|gb|ADO81121.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2866] Length = 269 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPNKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|158520483|ref|YP_001528353.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3] gi|158509309|gb|ABW66276.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3] Length = 252 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +IIEY+G+ + GWQ QK+ ++QG I A+ +TG+ V V G+GRTD+GVHA+ QVA Sbjct: 4 NFRLIIEYDGACFHGWQIQKDLRTVQGEITGALASITGQAVSVIGSGRTDAGVHAMAQVA 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F P L KALN L I I + V FHAR+SA ++Y YRI+ R P Sbjct: 64 SFICDTRLEPGTLQKALNGILA--KDIVIHDCREVSLNFHARYSAKSKTYRYRILNRNLP 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SFG 181 AL +G AW I K LD M A H++GRHDF++F +S +R + N + Sbjct: 122 AALYRGYAWHIKKPLDLGAMTAALPHILGRHDFSSFEGTGSPKASSVRHVTAATFNMAED 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG GK T + L A+DR G AP GL+ Sbjct: 182 GYLAFEITADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDRSRAGATAPGHGLFL 241 Query: 242 DSVEYS 247 V Y Sbjct: 242 VRVNYE 247 >gi|167767146|ref|ZP_02439199.1| hypothetical protein CLOSS21_01665 [Clostridium sp. SS2/1] gi|167711121|gb|EDS21700.1| hypothetical protein CLOSS21_01665 [Clostridium sp. SS2/1] gi|291559527|emb|CBL38327.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2] Length = 248 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 96/250 (38%), Positives = 135/250 (54%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + IEY+GS Y GWQR N ++IQG +E + +TGE V ++G+GRTD+GVH Sbjct: 1 MKRNIRLTIEYDGSRYQGWQRLGGDSNANTIQGKLESVLSKMTGEDVNINGSGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QVA+F + L YL I I+ +S ++FH+R +A ++YLYRI Sbjct: 61 AYGQVANFHTDCMMSVSEIKNYLTKYL--PSDIGIVEVSEASERFHSRLNAKEKTYLYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 E+ W P++LD + M AA L+G HDF F SI S +RTI + + Sbjct: 119 AIPGVSNVFERKYLWYFPETLDIKKMEEAASLLIGTHDFKGFSSIKKTKKSTVRTIYNIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I+I FLH +R G+L VG GK D+ KAL++ R + G APP Sbjct: 179 IKKTKKEIQISYTGNGFLHNMVRILTGTLVEVGCGKIKPEDITKALESTKRSDAGITAPP 238 Query: 237 EGLYFDSVEY 246 +GL+ SVEY Sbjct: 239 QGLFLVSVEY 248 >gi|317472004|ref|ZP_07931336.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA] gi|316900408|gb|EFV22390.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA] Length = 252 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q ++I+G + + + + GE + V GA RTDSGVHAL Sbjct: 1 MKRIKLEVAYDGTNYCGWQIQPKDTTIEGVLNEKLGSLLGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD E + +ALN L D I I + S V FH R+ R++Y Y I + Sbjct: 61 VAVFDTETEIPGERIARALNQRL--PDDIVIQSSSEVKDDFHPRYQDTRKTYEYTIYNAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E MR AA+ +G HDF +F + + +RTI +V Sbjct: 119 FDNPVTARHHHFVYVPLDVERMRTAARCFLGEHDFLSFSTTGSPTKTTVRTIYECEVRQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L +G G+ + + R + GP AP +GL Sbjct: 179 GRYITMRVTGNGFLYNMVRMMAGTLISIGRGRRDPEWVRELFLHPKRGKAGPNAPAKGLT 238 Query: 241 FDSVEY 246 ++ Y Sbjct: 239 LINIHY 244 >gi|257865435|ref|ZP_05645088.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257871770|ref|ZP_05651423.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257875038|ref|ZP_05654691.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|325569125|ref|ZP_08145372.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] gi|257799369|gb|EEV28421.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257805934|gb|EEV34756.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257809204|gb|EEV38024.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|325157583|gb|EGC69741.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] Length = 245 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQ +E I L+TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYLGWQRLGDSEKTIQEKVEGVIKLLTGEEIEIVGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + N YL I + + V ++FHAR+ A + Y Y + Sbjct: 61 QVANFKTTHQMSLPEMQQFFNRYL--PQDIVVNKIEEVPERFHARYHAKGKQYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + ++ P+ LD E M+ AA+ L+G HDF F ++ S +RTID + Sbjct: 119 AIPSVFARNTSFHCPQPLDLEKMQQAAEKLIGTHDFIGFSALKKSKKSTVRTIDEITITP 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ FLH +R G+L +GDG +++ L + R+ G P GL Sbjct: 179 EGDLLRFTFKGNGFLHKMVRILTGTLIAIGDGTLPPEVIDQVLADKVRQAAGETVPSHGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|6685124|gb|AAF23795.1|AF213822_10 tRNA-pseudouridine synthase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 245 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 132/246 (53%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +E++G + GWQR+K+G++IQGSIE+A + G+ V AGRTD+GVH L Sbjct: 1 MNRYRLTVEFDGRNFMGWQRKKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ R++ P L +ALNA LK I+IL+ VD ++HARFS I R YLYRII R+ Sbjct: 61 TAHIDVARDFTPFRLMEALNARLK-PRPIAILSCEQVDPEWHARFSCIGRRYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL LE GRAW + K LD E M IAA+ L+G HDFTTFRS+HCQ+ SP++T+DH DV Sbjct: 120 PPLTLEAGRAWHVIKPLDAETMDIAAKRLIGLHDFTTFRSVHCQSKSPVKTLDHLDVRRI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS VG L LVG G+WT+ D+ AL+A++R G APP+GLY Sbjct: 180 GDQIEITAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTQAIY 245 >gi|322831951|ref|YP_004211978.1| tRNA pseudouridine synthase A [Rahnella sp. Y9602] gi|321167152|gb|ADW72851.1| tRNA pseudouridine synthase A [Rahnella sp. Y9602] Length = 276 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS YFGWQRQ+ +S+Q +EKA+ V +VV AGRTD+GV A QV Sbjct: 17 RVALGIEYDGSAYFGWQRQQGVASVQECLEKALSRVANAPIVVFCAGRTDAGVSATGQVV 76 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD +N +L I++ + V + FHARFSA R Y Y I + Sbjct: 77 HFDTPVLRKDAAWTMGVNTHL--PKDIAVRWCANVGEDFHARFSATARRYRYVIYNNRYR 134 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M++A Q L+G +DFT+FR+ CQ+ +P R + H +V+ G+ Sbjct: 135 SAILHAGVTHVHMPLDVEKMQLAGQALLGENDFTSFRASQCQSRTPWRYVMHVNVSRHGS 194 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L A+DR PEGLY Sbjct: 195 YVVVDIKANAFVHHMVRNIVGSLVEIGAGNQPVGWMGELLAAKDRNLAAATGKPEGLYLV 254 Query: 243 SVEYS 247 V+Y Sbjct: 255 CVDYP 259 >gi|260582150|ref|ZP_05849944.1| tRNA pseudouridine synthase A [Haemophilus influenzae NT127] gi|260094782|gb|EEW78676.1| tRNA pseudouridine synthase A [Haemophilus influenzae NT127] Length = 269 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRQEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVIYP 244 >gi|150015077|ref|YP_001307331.1| tRNA pseudouridine synthase A [Clostridium beijerinckii NCIMB 8052] gi|189030131|sp|A6LPU5|TRUA_CLOB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149901542|gb|ABR32375.1| tRNA pseudouridine synthase A [Clostridium beijerinckii NCIMB 8052] Length = 244 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIE++GS + GWQRQ G +IQ IE AIF TGE ++++G+ RTD+GVHA Sbjct: 1 MRNIKLIIEFDGSNFCGWQRQPKGRTIQKVIETAIFKATGEEIMINGSSRTDAGVHAREM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +A+N L + +SI+ V + FHAR+S+ ++Y Y II R Sbjct: 61 VANFLTNSSIPGDKFREAINTRL--PEDVSIIKSEEVSEDFHARYSSKGKTYSYTIINRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L+L + LD MR A ++ +GRHDF F S + RTI ++ Sbjct: 119 ERLSLGHQYLYHYKYRLDVNEMRRACEYFIGRHDFRAFMSPGSSIKTTTRTIHDLYIDQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I + A FL+ +R VG+L +G+GK +++ ++ +RK+ G PP GL Sbjct: 179 GNEIKIFITADGFLYNMVRIIVGTLIKIGNGKLEVENIKDIIEEGNRKKAGMCVPPNGLI 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|259907892|ref|YP_002648248.1| tRNA pseudouridine synthase A [Erwinia pyrifoliae Ep1/96] gi|224963514|emb|CAX55004.1| tRNA pseudouridylate synthase I [Erwinia pyrifoliae Ep1/96] gi|283477767|emb|CAY73683.1| pseudouridylate synthase I [Erwinia pyrifoliae DSM 12163] Length = 271 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH QV Sbjct: 12 KLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADRPIAVFCAGRTDAGVHGTGQVV 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 72 HFETTAQRKDAAWTLGVNANL--PADIAVRWVKAVADDFHARFSATARRYRYVIYNQRLR 129 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H V+ G Sbjct: 130 PAILAGGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLKVSRHGA 189 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L A+DRK A EGLY Sbjct: 190 YVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPEGWMRELLVAKDRKLAAATARAEGLYLV 249 Query: 243 SVEYS 247 +V+Y Sbjct: 250 AVDYP 254 >gi|221134792|ref|ZP_03561095.1| tRNA pseudouridine synthase A [Glaciecola sp. HTCC2999] Length = 264 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 M +EY G+ ++GWQRQ N S+Q ++E A V E V + +GRTD+GVHA Q+ Sbjct: 3 TNIAMAVEYYGADFYGWQRQDNVPSVQQALEDAASFVADEKVNIICSGRTDAGVHATYQI 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + L K D I++ V FHARFSA R Y Y I + Sbjct: 63 VNFKTSAKRDEKAWT--LGVTTKTPDAIAVKWAVEVPDTFHARFSATARRYRYIIYNHRV 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A+ LD + M AAQ LVG HDFT+FR+ CQ+ +P R I +V G Sbjct: 121 PPAILAKGLTHCYLPLDAQKMHEAAQVLVGEHDFTSFRAALCQSKTPFRNIHFVNVQRVG 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +FLH +R+ GSL L+G G+ + L++ L+ +DR + G A P GLYF Sbjct: 181 EYVIIDIKANAFLHHMVRNIAGSLMLIGAGEQPLSWLQEILEIKDRTQAGVTAKPNGLYF 240 Query: 242 DSVEYS 247 V+Y Sbjct: 241 VDVDYP 246 >gi|147676690|ref|YP_001210905.1| tRNA pseudouridine synthase A [Pelotomaculum thermopropionicum SI] gi|146272787|dbj|BAF58536.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI] Length = 273 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 133/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + I Y+G+ Y+G+Q Q+ ++Q IE+ + + GE + V GAGRTD+GVHA Sbjct: 26 MRNIKVTIAYDGTNYYGFQEQRGTKFRTVQEVIEERLSRLAGEQIRVIGAGRTDAGVHAR 85 Query: 59 RQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F+ P + ALN+ L I+ L V FHARFSA+ ++Y Y I Sbjct: 86 GQVINFNPGNWPIPPERVAYALNSLL--PRDIAALESVEVPPSFHARFSAVAKTYRYTIY 143 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + + ++ +P+ LD E M+ A L+GRHDF+ FR++ S +RT+ V Sbjct: 144 NARVHSPFLRLYSYHVPRRLDVEAMQAGAALLIGRHDFSAFRALGTPVKSTVRTMLEACV 203 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G+L+ I + A FL+ R G+L VG GK ++ L+++D GP AP Sbjct: 204 SREGDLVYIDLKADGFLYHMARMIAGTLIRVGLGKIPPGEVAAILKSRDSLRGGPTAPAR 263 Query: 238 GLYFDSVEY 246 GL + +EY Sbjct: 264 GLCLEKIEY 272 >gi|325981656|ref|YP_004294058.1| tRNA pseudouridine synthase A [Nitrosomonas sp. AL212] gi|325531175|gb|ADZ25896.1| tRNA pseudouridine synthase A [Nitrosomonas sp. AL212] Length = 265 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 139/247 (56%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++EY+GS Y GWQ Q SIQ ++E A+ + E + V AGRTD+GVHAL Q Sbjct: 1 MARIILVLEYDGSRYCGWQSQPENCSIQNALETALSKIAHEEIHVITAGRTDAGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + +NA+L D I++L S V +FHAR+SA+ R YLY ++ + Sbjct: 61 VVHFDTFVQRPLNAWVRGVNAFL--PDDIAVLWASEVSDRFHARYSALERRYLYFLLNQS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + L + M+ AA L+G HDF++FR+ CQA SPIRTI + Sbjct: 119 VRPGVNHKKVGWFHQPLQLDIMQRAANILIGEHDFSSFRAAACQAKSPIRTITQLKIARH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GNL+ + A +FL +R+ +G L +G GK++S + + L+ +R P P GLY Sbjct: 179 GNLLIFDLRANAFLQHMVRNIIGCLVYIGKGKYSSEWMLELLEGCNRAYAAPTFSPAGLY 238 Query: 241 FDSVEYS 247 V+Y Sbjct: 239 LAGVKYD 245 >gi|241668494|ref|ZP_04756072.1| tRNA pseudouridine synthase A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877028|ref|ZP_05249738.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843049|gb|EET21463.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 258 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL++ +VD F++RF+A R+Y Y I Sbjct: 61 VVNFHSDADRNLSSWMRGTNALL--PQDIKILDIKVVDNDFNSRFTAKNRTYNYIIYNSL 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + L+ + M A ++L+G DFT+FRS CQ+++P R I + Sbjct: 119 ISSPIFAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+F+GSL VG + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNFIGSLLKVGLEFESPEWIKLVLEAKDRTKAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|82703035|ref|YP_412601.1| tRNA pseudouridine synthase A [Nitrosospira multiformis ATCC 25196] gi|82411100|gb|ABB75209.1| tRNA pseudouridine synthase A [Nitrosospira multiformis ATCC 25196] Length = 351 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R M++EY+GS + GWQ Q G+++Q ++E A+ + GE + V AGRTD+GVHA+ QV Sbjct: 57 VRIAMVLEYDGSNFCGWQSQPGGNTVQDAVEAALSEIAGEAIRVVTAGRTDAGVHAIYQV 116 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + NA L I++L S FHAR+ A+ R YLY ++ Sbjct: 117 LHFDTRAERPMNAWVRGANALL--PSGIALLWASPTADDFHARYCALERCYLYLLLNHPV 174 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + R L E+M++ AQ LVG HDF+ FR+ CQA SP+RT+ +V G Sbjct: 175 RPGLHQHRVGWYHHPLRLESMQMGAQMLVGEHDFSAFRAAACQAKSPVRTLTKLEVTRVG 234 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ + A +FLH +R+ VG L VG GK+ + K L+ R E P GLY Sbjct: 235 NMVAFELRANAFLHHMVRNIVGCLVYVGKGKFRPDWIGKLLENGKRSEAAPTFSASGLYL 294 Query: 242 DSVEYS 247 V Y Sbjct: 295 AGVAYD 300 >gi|163742263|ref|ZP_02149651.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis 2.10] gi|161384593|gb|EDQ08974.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis 2.10] Length = 257 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 116/251 (46%), Positives = 165/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIENALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+V++W P L +ALN +LK ++I++ + V+ +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMVKDWDPFRLSEALNFHLK-PSPVAIVDCARVEDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G+ W + LD M+ AA HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGQVWQLNHDLDAGAMQEAANHLIGQHDFTTFRSSICQAASPLKTLDELRIERV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLARVGYP 250 >gi|170749553|ref|YP_001755813.1| tRNA pseudouridine synthase A [Methylobacterium radiotolerans JCM 2831] gi|238688894|sp|B1M6N9|TRUA_METRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170656075|gb|ACB25130.1| tRNA pseudouridine synthase A [Methylobacterium radiotolerans JCM 2831] Length = 253 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 115/251 (45%), Positives = 159/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+GS + GWQRQ + ++QG+IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGSPFCGWQRQADDPTVQGAIEAAVTRFSGENARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ V F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAETVPDSFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P LD + M AAQ LVGRHDF+ FR+ CQA+SPIRT++ DV Sbjct: 120 SPAALTRAHVWHVPWPLDADLMHDAAQRLVGRHDFSAFRAAECQANSPIRTLEQLDVARA 179 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I + ARSFLH Q+R+ VG+L L G + + D+ + L + D+ CGPLAP Sbjct: 180 PMALHDEIVVATAARSFLHHQVRAMVGTLMLAGCRRLAADDVAEILASGDKSRCGPLAPA 239 Query: 237 EGLYFDSVEYS 247 GL F V+Y Sbjct: 240 AGLTFVGVDYD 250 >gi|257870548|ref|ZP_05650201.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] gi|257804712|gb|EEV33534.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] Length = 247 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ V +HG+GRTD+GVHAL Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTRMNNGQAVQIHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + L+ + + I++ + IVD+ FHAR+ ++Y +R+ Sbjct: 61 QVIHFDFDE-RPLEKMRFGLDT--QTPEDIAVKQVEIVDEHFHARYLVREKTYQFRVDIG 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + A P LD ++ A L+G HDFT+F + +RTI +V Sbjct: 118 KPRSPFRRYYASYYPYPLDLMKIQQALPDLLGTHDFTSFCATGSSVEDKVRTIHQASMEV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N G+ + FL+ IR VG+L +G+G+ + + + +DR GP A PE Sbjct: 178 NEAGDELLFTFRGDGFLYKMIRIMVGTLLKIGNGRLPADSIPAIIAQKDRNAAGPTAHPE 237 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 238 GLYLVRVAYE 247 >gi|325523908|gb|EGD02125.1| tRNA pseudouridine synthase A [Burkholderia sp. TJI49] Length = 270 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQNALEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + NA+L ++++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLDREPFSWVRGTNAFL--PPSVAVQWAKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDRRAGWIHTPLDDDAMRTAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWMAAVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|153853813|ref|ZP_01995169.1| hypothetical protein DORLON_01160 [Dorea longicatena DSM 13814] gi|149753563|gb|EDM63494.1| hypothetical protein DORLON_01160 [Dorea longicatena DSM 13814] Length = 246 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + K++ +TGE + + GA RTDSGVHAL Sbjct: 1 MKRIRIFVAYDGTNYCGWQVQPNGVTIEEKLNKSLARLTGEEIRIIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA-IRRSYLYRIITR 119 VA FD P ALN L + I ++ V +H R+ I ++Y Y I Sbjct: 61 VAVFDTESSIPPERFAYALNQRL--PEDIVVVRSDEVPADWHPRYQENISKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L+ + +D E MR A++LVG HDF +F +I +RT+ + Sbjct: 119 AVPNPLKTRYCTFVSFPMDVEAMRAGAKYLVGEHDFVSFCNIRTNTQDTVRTVYDLIIEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I +R+ FL+ +R G L VG G +T +++ L A+ G APP GL Sbjct: 179 KDDEIVLRITGNGFLYNMVRIIAGVLIRVGRGFYTPEKVKEILDAKVHTSEGATAPPNGL 238 Query: 240 YFDSVEYS 247 ++Y+ Sbjct: 239 VLMKIDYN 246 >gi|315634336|ref|ZP_07889623.1| tRNA pseudouridine synthase A [Aggregatibacter segnis ATCC 33393] gi|315476926|gb|EFU67671.1| tRNA pseudouridine synthase A [Aggregatibacter segnis ATCC 33393] Length = 261 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQ+Q+ +S+Q +E+AI V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKRYFGWQKQEKVASVQAELEQAISTVANEEISIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ +VD FHARFSA R Y Y + + Sbjct: 61 IHFETTANRPEKAWSFGVNANL--PDDIAVRWAKVVDDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V+ G Sbjct: 119 RSAILPQGITHCHLELDHQLMHQAGQALLGENDFSSFRAAQCQSNTPWRNVHHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G L L QDR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWLAWLLGQQDRTLAAPTAKPEGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VNVLYP 244 >gi|291520511|emb|CBK75732.1| pseudouridylate synthase I [Butyrivibrio fibrisolvens 16/4] Length = 245 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++ Y+GS Y GWQ Q NG +I+ + +A+ + E + + GA RTD+GVH+L V Sbjct: 1 MRVMIVVAYDGSNYSGWQIQPNGVTIEQKLNEALTDLLQEPISIMGASRTDAGVHSLGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD + ALN L D I + V+ FH R++A R++Y Y+I+ R+ Sbjct: 61 AVFDTNSRMPADKISFALNQRL--PDDIVVQYSCQVEDDFHPRYAACRKTYEYKILNRKM 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ + LD E M AA +L+G+HDFT+F S+ Q S +RTI V Sbjct: 119 PDPTKRKDTFHYYYDLDVEKMNEAAAYLIGQHDFTSFSSVKAQVKSRVRTIYTAKVYKED 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IR+ FL+ +R G+L VG G+ + + + ++R+ GP AP GL Sbjct: 179 DVIHIRLTGDGFLYNMVRIIAGTLIKVGAGEMEPMYMLEIFRGRNRELAGPTAPAHGLTM 238 Query: 242 DSVEYS 247 +EY Sbjct: 239 IGIEYE 244 >gi|315651854|ref|ZP_07904857.1| tRNA pseudouridine synthase A [Eubacterium saburreum DSM 3986] gi|315485856|gb|EFU76235.1| tRNA pseudouridine synthase A [Eubacterium saburreum DSM 3986] Length = 245 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ+Q NG +++ + +AI +TGE + V GA RTDSGVHA Sbjct: 1 MRRIRLIVSYDGTNYCGWQKQPNGITVEEILNRAISKLTGEEIEVIGASRTDSGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD A+N L D I I V+ +H R + ++Y YRI+ R+ Sbjct: 61 VAVFDTNVRMAADKFAFAINQRL--PDDIRIQYSDEVESDWHPRKNDCIKTYTYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ A +LD E MR A+ + +G HDFT+F S QASSPIRT+ +V Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCSQKSQASSPIRTVFSLEVLQD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I I V FL+ IR G+L VG G + + + + ++A++RK G P +GL Sbjct: 179 EDMITIVVRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKERKFAGQTMPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|270262840|ref|ZP_06191111.1| tRNA pseudouridine synthase A [Serratia odorifera 4Rx13] gi|270043524|gb|EFA16617.1| tRNA pseudouridine synthase A [Serratia odorifera 4Rx13] Length = 273 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ +S+Q S+E+A+ V + V AGRTD+GVHA QV Sbjct: 13 KIALGIEYDGSRYYGWQRQQEVASVQASLEQALSKVANAPISVLCAGRTDAGVHATGQVV 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +N +L I++ ++ V + FHARFSA R Y Y I + Sbjct: 73 HFETTAQRKDAAWTMGVNTHL--PPDIAVRWVTGVAEDFHARFSATARRYRYIIYNHRYR 130 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V +G Sbjct: 131 PAVLQQGVTHFYHPLDAERMERAAQALLGENDFTSFRAVQCQSRTPWRNVKHVKVTRYGE 190 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + + + L +DR A EGLY Sbjct: 191 YIVVDIKANAFVHHMVRNIVGSLMEIGCGNQSENWMAELLALKDRNLAAATARAEGLYLV 250 Query: 243 SVEYS 247 SV+Y Sbjct: 251 SVDYP 255 >gi|331002224|ref|ZP_08325743.1| tRNA pseudouridine synthase A [Lachnospiraceae oral taxon 107 str. F0167] gi|330411318|gb|EGG90734.1| tRNA pseudouridine synthase A [Lachnospiraceae oral taxon 107 str. F0167] Length = 245 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ+Q NG +I+ + AI +TGE + V GA RTDSGVHA Sbjct: 1 MRRIRLIVSYDGTNYCGWQKQPNGITIEEVLNNAITKLTGEDIEVIGASRTDSGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD A+N L + I I V+ +H R + ++Y YRI+ R+ Sbjct: 61 IAVFDTNARIAADKFAFAINQRL--PEDIRIQYSDEVESGWHPRKNDCIKTYTYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ A +LD E MR A+ + +G HDFT+F S QASSPIRTI ++ Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCSQKSQASSPIRTIFSLEILQD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ I + FL+ IR G+L VG G + + + + ++A++RK G P +GL Sbjct: 179 EDMVTIVIRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKNRKLAGQTMPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|210623220|ref|ZP_03293659.1| hypothetical protein CLOHIR_01609 [Clostridium hiranonis DSM 13275] gi|210153757|gb|EEA84763.1| hypothetical protein CLOHIR_01609 [Clostridium hiranonis DSM 13275] Length = 243 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++YNG+ Y GWQ Q N IQG+IE AI +TGE V ++G+GRTD+GVHAL Q Sbjct: 1 MRNIKITVQYNGANYCGWQEQPNSPGIQGNIEYAIKEITGEKVKINGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + + + ALN+ L ISI++ V+ +FHAR+SA + Y Y + + Sbjct: 61 VANFKIESQIPVNRIPDALNSKL--PKDISIIDAEEVEDEFHARYSAKGKIYKYLVYNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + K ++ + LD E M+ A+ L+G +DF F S +RTI + Sbjct: 119 YRNPILKDISYQVKYDLDFEKMKKEAESLIGTYDFCGFMSSGSSVKDTVRTIKSVKIEKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI FL+ +R G+L +G G+ T +E +++QDR + G AP L+ Sbjct: 179 DDLIVFEFEGNGFLYNMVRILSGTLIDIGRGRIT-ESMEDIIKSQDRSKAGHTAPGHALF 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LKKVFY 243 >gi|15602502|ref|NP_245574.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp. multocida str. Pm70] gi|13431946|sp|P57861|TRUA_PASMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12720912|gb|AAK02721.1| TruA [Pasteurella multocida subsp. multocida str. Pm70] Length = 264 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I+YNG Y GWQRQ+N +S+Q +EKAI V + + AGRTDSGVHA QV Sbjct: 1 MKIALGIQYNGKNYCGWQRQENVASVQEQLEKAISFVANQPCQIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D IS+ V FHARFSA R Y Y + + Sbjct: 61 VHFETDAIRAEKAWSFGVNANL--PDDISVSWAKCVTDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M A Q L+G DF++FR+ CQ+ +P R + H V G Sbjct: 119 RSAILPEGVTHCHLDLDHHLMHQAGQALLGEQDFSSFRAAQCQSHTPFRNVHHLKVVRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G + L +DR+ P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAQKDRRLAAPTAKPEGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VNVSYP 244 >gi|167627942|ref|YP_001678442.1| tRNA pseudouridine synthase A [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189029995|sp|B0U0B1|TRUA_FRAP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167597943|gb|ABZ87941.1| tRNA-pseudouridine synthase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 258 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL++ VD F++RF+A R+Y Y I Sbjct: 61 VVNFHSDADRNLSSWMRGTNALL--PQGIKILDIKEVDNDFNSRFTATNRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + L+ + M A ++L+G DFT+FRS CQ+++P R I + Sbjct: 119 ISSPILAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+F+GSL +G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNFIGSLLKIGLEFESPEWIKLVLEAKDRTKAAETAKAHGLY 238 Query: 241 FDSVEYS 247 F VEY Sbjct: 239 FVGVEYP 245 >gi|51340814|sp|Q814C2|TRUA1_BACCR RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 Length = 247 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 179 QDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWEVNYN 246 >gi|291166165|gb|EFE28211.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896] Length = 244 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I+Y G+ Y GWQ+Q NG SIQ IE+AI VTG+ V + G+GRTDSGVHAL QV Sbjct: 3 QNILLKIQYIGTNYCGWQKQNNGKSIQQEIERAICEVTGKQVNLTGSGRTDSGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + A+N YL D I I+ V+ FHAR+S+ +++Y YRI + Sbjct: 63 ANFVIDTTIPVEKIKYAINYYL--PDDIRIIESKAVEDSFHARYSSKKKTYCYRINMNEI 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 EK R++ + K LD M+ ++ L+G HDF F+S + +RTI ++N Sbjct: 121 ESPFEKNRSYFVGKELDLSKMKEQSKFLMGEHDFAAFQSEGSSVKTTVRTIYSLEINCIN 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+ EI ++ FL+ +R G+L +G GK + L + R+ GP AP GL+ Sbjct: 181 NIAEIHIIGNGFLYNMVRIIAGTLIEIGKGK--DYSIVDILNTKQRENAGPTAPACGLFM 238 Query: 242 DSVEYS 247 + VEY Sbjct: 239 EKVEYD 244 >gi|332685695|ref|YP_004455469.1| tRNA pseudouridine synthase A [Melissococcus plutonius ATCC 35311] gi|332369704|dbj|BAK20660.1| tRNA pseudouridine synthase A [Melissococcus plutonius ATCC 35311] Length = 257 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q Q NG ++Q +EK ++ + + + + G+GRTD+GVHAL Sbjct: 1 MPRYKAIIAYDGTNFNGFQSQINGRTVQDELEKTLYKLNNNQSITIFGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ L AL+ + IS+ + V FHAR+ I ++Y ++I T Sbjct: 61 QVIHFDYLKARDVEKLRFALDT--QSPADISVKKIEEVSNNFHARYHVIEKTYQFKIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P S+D + A L+G HDFT+F + C S IRTI V+ Sbjct: 119 KTRDPFRRFYASYFPHSIDLAKIEKALPDLLGEHDFTSFCAAGCSVDSKIRTIYEASVSQ 178 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I FL+ +R VG+L +G GK T + + + ++R+ GP A PEG Sbjct: 179 TSEDEIIFTFRGNGFLYKMVRIIVGTLLKIGQGKIKETAIPEIIAGKNRRLAGPTAHPEG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLVQVIYE 247 >gi|260438183|ref|ZP_05791999.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] gi|292809373|gb|EFF68578.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] Length = 250 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+GY GWQ+Q N +++ + KA + + + + GA RTD+GVH+ V Sbjct: 1 MRVMLRVAYDGTGYSGWQKQPNAITVEEVLCKACKNLFAQDIDIIGASRTDAGVHSYGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD+ + ALN+ L + I ++ V + FH R R++Y Y+I + Sbjct: 61 AVFDVDTRIPAEKISYALNSRL--PEDIRVVESRQVSENFHPRHVECRKTYEYKIWNDKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + + +LD M A ++ +G HDFT+F S+ Q S IR I V Sbjct: 119 ENPLVRYYSHFFYGNLDIGKMNEACRYFIGLHDFTSFCSVGSQVQSKIREIYSISVEKNN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI IRV FL+ +R G+L VG G+ ++ K + ++R+ GP AP GL Sbjct: 179 RLITIRVTGNGFLYNMVRIIAGTLIKVGQGQLEPAEIPKIIDGKNRELAGPTAPARGLAL 238 Query: 242 DSVEYS 247 + Y Sbjct: 239 VEINYE 244 >gi|254496537|ref|ZP_05109407.1| tRNA pseudouridine synthase A [Legionella drancourtii LLAP12] gi|254354236|gb|EET12901.1| tRNA pseudouridine synthase A [Legionella drancourtii LLAP12] Length = 262 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q ++Q ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVLEYDGSHYHGWQAQTGLHTVQQALEHALSKVADCPISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +E N++L S + + + + F+AR+SA R Y Y I Sbjct: 61 VHFDTDKERSIRAWIHGANSFL--SKDVCVKWGKELSETFNARYSATARRYRYVIYNGAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + + LD M AAQ L+G +DFT+FRS+ CQ+++P+R I V Sbjct: 119 RPALLRSNVTWQYRQLDHRLMHQAAQLLLGENDFTSFRSVECQSNTPMRNIHKLQVTRTN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A +FLH +R+ G L VG GK + +++ L+A+DR+ AP GLY Sbjct: 179 DLVIIDITANAFLHHMVRNIAGVLIAVGSGKHPVSWVDEVLKARDRRLGAETAPAYGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VQVTYP 244 >gi|145635070|ref|ZP_01790776.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittAA] gi|145267678|gb|EDK07676.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittAA] Length = 269 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EK++ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKSLSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVVYP 244 >gi|30018411|ref|NP_830042.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206972233|ref|ZP_03233180.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|228956583|ref|ZP_04118379.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041047|ref|ZP_04189810.1| tRNA pseudouridine synthase A [Bacillus cereus AH676] gi|229125659|ref|ZP_04254691.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4] gi|229142948|ref|ZP_04271389.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24] gi|229188427|ref|ZP_04315475.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876] gi|296500975|ref|YP_003662675.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] gi|29893951|gb|AAP07243.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206732807|gb|EDZ49982.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|228595101|gb|EEK52872.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876] gi|228640569|gb|EEK96958.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24] gi|228657851|gb|EEL13657.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4] gi|228727344|gb|EEL78538.1| tRNA pseudouridine synthase A [Bacillus cereus AH676] gi|228803148|gb|EEM49970.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322027|gb|ADH04955.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] Length = 252 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|219853559|ref|YP_002470681.1| hypothetical protein CKR_0216 [Clostridium kluyveri NBRC 12016] gi|219567283|dbj|BAH05267.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 247 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 ++IEY+G+ Y GWQRQ N +IQ +E+AI TGE V G+ RTD+GVHA V Sbjct: 6 NIKLVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGFVC 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + + LN L + I++L+ VD FH+R+ + Y Y I+T P Sbjct: 66 NFFTASKIPTSNIKMVLNTLL--PEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGDRP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + + + + LD E ++ + ++ +G HDF+ F+ A S IRTI V N Sbjct: 124 PVIGRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKEKN 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I+ +V FL+ +R +G+L VG G+++ ++ L+++DR + G P +GL + Sbjct: 184 IIKFNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCLE 243 Query: 243 SVEY 246 V Y Sbjct: 244 KVFY 247 >gi|15893251|ref|NP_360965.1| tRNA pseudouridine synthase A [Rickettsia conorii str. Malish 7] gi|24212567|sp|Q92FZ9|TRUA_RICCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15620470|gb|AAL03866.1| pseudouridylate synthase I [Rickettsia conorii str. Malish 7] Length = 245 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 108/246 (43%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISAPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|54294200|ref|YP_126615.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Lens] gi|62901233|sp|Q5WX34|TRUA_LEGPL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|53754032|emb|CAH15505.1| tRNA-pseudouridine synthase I [Legionella pneumophila str. Lens] Length = 262 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q +IQ ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVVEYDGSQYHGWQAQTGLHTIQQAVEFALSKVADSSISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ N++L I + + + FHAR+SA+ R Y Y I Sbjct: 61 IHFDCEKDRSIRAWIHGANSFL--PKDICVKWGKEMPENFHARYSAVSRRYRYVIYNGAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L +G + LD M+ Q L+G +DFT+FRS+ CQ+++P+R I V G Sbjct: 119 RPGLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVECQSNTPMRNIHQLQVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ + + A +FLH +R+ G L VG GK ++ L A+DRK AP GLY Sbjct: 179 DLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVLNAKDRKLGAETAPSYGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VQVTYP 244 >gi|227530236|ref|ZP_03960285.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540] gi|227349848|gb|EEJ40139.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540] Length = 256 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 129/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q + +++ ++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGSNFSGFQIQPHKRTVEQVLKNAVNKIAKHPTPEIPVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + KALN+ L I I +VD FHAR+SA ++Y YR+ Sbjct: 61 LNQVAHFDIPYHLSNESMRKALNSIL--PLDILIKKAELVDSDFHARYSAHNKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ LD MR AA++ +G HDFT+F + QA S +RT+ D+ Sbjct: 119 QGEFVNPFKRNYTAHFKYPLDLTLMRKAAKNFIGEHDFTSFVASGSQAKSNVRTVYKIDI 178 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N + FL+ QIR V L +G + D+++ L A+DR + AP Sbjct: 179 KRDKLRNEVVFDFTGNGFLYNQIRIMVAFLLEIGSKQRPVDDVKRVLAAKDRTQARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY SV+Y Sbjct: 239 ASGLYLVSVDY 249 >gi|85059597|ref|YP_455299.1| tRNA pseudouridine synthase A [Sodalis glossinidius str. 'morsitans'] gi|84780117|dbj|BAE74894.1| pseudouridylate synthase I [Sodalis glossinidius str. 'morsitans'] Length = 271 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ +S+Q +E+A+ V E V V+ AGRTD+GVHA QV Sbjct: 10 MKLALGIEYDGSAYYGWQRQQEVASVQACLERALSTVADETVTVYCAGRTDAGVHATGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L I++ ++ V FHARFSA R Y Y I Sbjct: 70 VHFDTRSRRPDTAWTLGVNANL--PADIAVRWVAPVTDDFHARFSATARRYRYIIYNHPL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL LD +M A Q L+G +DFT+FR++ CQ+ SP R + H V G Sbjct: 128 RPALLGRGLTHYYHPLDAPSMARAGQCLLGENDFTSFRALQCQSRSPWRNVHHLYVTRQG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + L +DR + G A EGLY Sbjct: 188 RYVVVDIKANAFVHHMVRNIVGSLLEVGCGNRPESWIADLLACRDRTQAGATARAEGLYL 247 Query: 242 DSVEYS 247 +V+Y Sbjct: 248 VAVDYP 253 >gi|312870517|ref|ZP_07730636.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3] gi|311093979|gb|EFQ52304.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3] Length = 256 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 134/251 (53%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q + +++ ++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKYPDPPISVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + + KALN+ L I + VD+ FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDLPYQLSDESMRKALNSLL--PLDILVKKAERVDESFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ +D + MR+AA+ +G HDFT+F + QA S +RT++ V Sbjct: 119 QGDFVDPFKRNYTAHYKVPVDIDKMRLAAKDFIGEHDFTSFVASGSQAKSNVRTVEKITV 178 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + N + FL+ QIR V L VG G+ +D+++ L A+DR + AP Sbjct: 179 DRDPAQNEVVFEFTGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY SV+Y Sbjct: 239 ASGLYLVSVDY 249 >gi|311029085|ref|ZP_07707175.1| Pseudouridylate synthase I [Bacillus sp. m3-13] Length = 248 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 131/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R I+ Y+G+G+ G+Q QK ++Q +++A+ + G V V +GRTD+GVHA+ Sbjct: 1 MNRLKCILTYDGAGFEGYQIQKEKRTVQLEVQRALSRIHKGTEVKVSASGRTDAGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA+L I + + V FHARF +++ Y Y++ Sbjct: 61 QVLHFDSPLSIPVAAWQNALNAHL--PKDIWVKKVESVSGDFHARFDVVKKEYRYKVSLA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + + P LD E ++ A HL+G HDFT+F S + +RTI +V Sbjct: 119 KDFNVFDRDQVYHYPYPLDLEAVKEACGHLIGEHDFTSFCSAKTEVEDKVRTIYSLEVVR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +E R++ FL+ +R VG+L +G GK D+ L+A+DR G AP GL Sbjct: 179 NGEELEFRIIGNGFLYNMVRIIVGTLLEIGQGKKLPRDIFSILEARDRGAAGKTAPAHGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLWNVVYD 246 >gi|260588018|ref|ZP_05853931.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|331082412|ref|ZP_08331538.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] gi|260541545|gb|EEX22114.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|330400898|gb|EGG80499.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] Length = 244 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y + I+Y+GS Y GWQRQK+ ++IQG IE + + G V + GAGRTD+GVHA Q Sbjct: 1 MNYRLDIQYDGSRYGGWQRQKDTDNTIQGKIEDVLTKMLGTEVQIQGAGRTDAGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F E +C+ LN YL + I I +S +++FH+R +A + Y YRI++ Sbjct: 61 VANFHADCEKSCEEICQYLNEYL--PEDIEISKVSEAEERFHSRLNAKEKVYQYRIVSGI 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + ++LD M+ AA++L G HDF +F S S +RTI ++ Sbjct: 119 HKNVFERKYQCPLHETLDVNAMQEAAKYLEGTHDFKSFCSNKKMKKSSVRTIYSIEIVDL 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I FL+ +R G+L VG G+ +++ L+ DRKE G AP GL Sbjct: 179 TQEIVITYTGNGFLYNMVRILTGTLIEVGRGRRKPEEMKGILEGCDRKEAGFTAPARGLT 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLEVRY 244 >gi|188533312|ref|YP_001907109.1| tRNA pseudouridine synthase A [Erwinia tasmaniensis Et1/99] gi|188028354|emb|CAO96215.1| tRNA pseudouridylate synthase I [Erwinia tasmaniensis Et1/99] Length = 271 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 11 VKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADCPVNVFCAGRTDAGVHGTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V +FHARFSA R Y Y I ++ Sbjct: 71 VHFETTAQRKDAAWTLGVNANL--PADIAVRWVKAVPDEFHARFSATARRYRYIIYNQRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G Sbjct: 129 RPAILAGGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVIHLNVSRHG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + + A+DRK A EGLY Sbjct: 189 AYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPEGWMRELMIARDRKLAAATARAEGLYL 248 Query: 242 DSVEYS 247 +V+Y Sbjct: 249 VAVDYP 254 >gi|254454857|ref|ZP_05068294.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 238] gi|198269263|gb|EDY93533.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 238] Length = 256 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 120/252 (47%), Positives = 157/252 (62%), Gaps = 6/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFCGWQRQTSDPSVQGAIEAALAKLEPREHKIGAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +ALN +LK ISI+ + V +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMDKAWDAFRLSEALNFHLK-PAPISIVACAQVSDDWHARFSALERRYLFRLVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE G+ W + + LD M+ A L+G HDFTTFRS CQA SP+RT+D V Sbjct: 120 APLVLEVGKVWQVGQKLDGALMQAGADRLLGHHDFTTFRSTVCQADSPMRTLDGLKVQQV 179 Query: 181 -----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 180 TRVDGAQEFQFHVRARSFLHNQVRSFVGTLERVGAGAWTPDDVTAALNARDRTACGPVCP 239 Query: 236 PEGLYFDSVEYS 247 P GLY V Y Sbjct: 240 PHGLYLAGVSYP 251 >gi|164688053|ref|ZP_02212081.1| hypothetical protein CLOBAR_01698 [Clostridium bartlettii DSM 16795] gi|164602466|gb|EDQ95931.1| hypothetical protein CLOBAR_01698 [Clostridium bartlettii DSM 16795] Length = 245 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M M++EY+GS + G+Q+ K N ++IQG +E + + E + + G+GRTD GVHA Sbjct: 1 MRNIKMVVEYDGSNFKGFQKLKDNENTIQGKLESVLSQMADENIEIIGSGRTDMGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + K L YL +I+I + VD +FH+R++A R+ YLY+I Sbjct: 61 QVVNFKTNSPLSLNKMHKYLYEYL--PQSIAIREIEEVDDRFHSRYNAKRKVYLYKIDNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + +PK +D + MR A LVG HDFT+F S + S +R I +N Sbjct: 119 EYPNPFNRKYTCHVPKKIDLDKMRAVADVLVGEHDFTSFCSSRSKKKSHVREIYSISINE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LIEI V FL+ +R G+L G K T +++ L+ +DR + AP +GL Sbjct: 179 NNGLIEIYVEGNGFLYNMVRIIAGTLIDAGHNKITPEEVKNLLELKDRSKSPETAPSKGL 238 Query: 240 YFDSVEY 246 + V+Y Sbjct: 239 FLYRVKY 245 >gi|153938429|ref|YP_001392800.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|152934325|gb|ABS39823.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|295320780|gb|ADG01158.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613] Length = 246 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSQPIAIGRNYIFQFKNKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIMVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|170756303|ref|YP_001783087.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] gi|169121515|gb|ACA45351.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] Length = 246 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSQPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIMVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|121534665|ref|ZP_01666486.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1] gi|121306685|gb|EAX47606.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1] Length = 250 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 3/246 (1%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G+ Y G+QRQ N ++Q +E+ + + G + V GA RTD+GVHA Q Sbjct: 7 QRYLKLTVAYDGTAYHGFQRQANAITVQQVLEERLATIFGHPLKVTGAARTDAGVHAYGQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + +A A + I ++ V FHARFSA + YLYRI Sbjct: 67 VVGFATSGTIPAANIVRA--AKSVLPPDIVVVKAEEVSADFHARFSARSKIYLYRIYNAA 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AW + + LD M A Q +VG HDF+ FR+ SP+RTI Sbjct: 125 VADPFRRNYAWHVTQPLDEAAMDTAVQTVVGTHDFSAFRAAGGPPVSPVRTIYEAGCTRE 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++E R FL+ +R+ VG+L VG G+ T + L +DR G APP+GLY Sbjct: 185 GDMLEFRFWGNGFLYHMVRNLVGTLVDVGLGRLTRDGFTRILAGRDRTRAGITAPPQGLY 244 Query: 241 FDSVEY 246 + Y Sbjct: 245 LKEIFY 250 >gi|83943967|ref|ZP_00956424.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36] gi|83954540|ref|ZP_00963251.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1] gi|83840824|gb|EAP79995.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1] gi|83845214|gb|EAP83094.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36] Length = 262 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 118/251 (47%), Positives = 165/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + +S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MQRYALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIEPRAHNIAAAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +A+N +LK I+I++ VD FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMERDWTPFRLSEAINYHLK-PLPIAIVDCVAVDDDFHARFSALERRYLFRVLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + G W + K LD + MR AA HL+G HDFTTFRS CQA +P++T+D D+ Sbjct: 120 PPATHQAGLVWQVKKPLDIDRMREAATHLIGEHDFTTFRSTICQAQTPVKTLDRVDMTEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G ++ V ARSFLH Q+RS VG+L+ VG G + D+++ L A+DR+ CGP+APP Sbjct: 180 PVGGGVEVQFDVRARSFLHNQVRSIVGTLERVGAGSFAPDDVKQMLAARDRQACGPVAPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLSHVTYE 250 >gi|228477786|ref|ZP_04062414.1| tRNA pseudouridine synthase A [Streptococcus salivarius SK126] gi|228250478|gb|EEK09692.1| tRNA pseudouridine synthase A [Streptococcus salivarius SK126] Length = 248 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 134/250 (53%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I ++++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDVVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L M+ AA+ LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ Q+R+ VG+L +G+G+ + ++ L+++DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|228995804|ref|ZP_04155464.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17] gi|229003424|ref|ZP_04161244.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4] gi|228757802|gb|EEM07027.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4] gi|228763965|gb|EEM12852.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17] Length = 245 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQR N ++IQG IE + +TG + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGGRYKGWQRLGNNDNTIQGKIESVLSEMTGREIEIIGCSRTDAGVHALH 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ +V ++FHAR+++ ++YLY+I Sbjct: 61 QVANFKIDENLPELKVKKYLNQYL--PNDISITDVELVSERFHARYNSKSKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ENM+ AAQ+L+G HDFT F + + S +R I DV Sbjct: 119 EHTNPFMRKYSMHVGKKLNIENMQKAAQYLIGSHDFTAFSNAKSKKKSMVREIYMLDVVE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 SEGFIQIRVNGNGFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQINCLADASGL 238 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 239 YLEKVDF 245 >gi|254460774|ref|ZP_05074190.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2083] gi|206677363|gb|EDZ41850.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium HTCC2083] Length = 259 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 124/251 (49%), Positives = 159/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK S+QG IE A+ + + AGRTDSGVHA Q Sbjct: 1 MPRYALKVEYHGAPFVGWQRQKTHVSVQGQIEAALAKLEPGNHTIGAAGRTDSGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L ALN +LK D ISI+ + V+ +HARFSA+ R Y +R++ R+ Sbjct: 61 VAHCDLAKDWDPFKLSGALNYHLK-PDPISIVACAEVNDDWHARFSALERRYEFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P + G W +P LD M+ AQHL+G HDFTTFRS CQA SP++T+D V Sbjct: 120 PPATHDAGLVWQVPHLLDVNAMQAGAQHLLGLHDFTTFRSSICQAQSPLKTLDELKVRQI 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L VG G WT D++ ALQAQDR+ CGP++PP Sbjct: 180 DGPSGPEIRFTVRARSFLHNQVRSFVGTLGSVGSGAWTPDDVKSALQAQDRQACGPVSPP 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLAHVTYP 250 >gi|288554758|ref|YP_003426693.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4] gi|288545918|gb|ADC49801.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4] Length = 247 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 134/248 (54%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R II Y+G+ + G+Q Q N ++Q IE+A+ V G+ V V +GRTD+GVHA Sbjct: 1 MNRIACIISYDGTNFSGYQVQPNKRTVQLEIEQALKRVHKGQEVSVTASGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD KALNA L D I +L+ +K FHAR+ + Y YR++ Sbjct: 61 QVIHFDSPFRIPAAQWPKALNACL--PDDIRVLSAHYAEKDFHARYHTTGKEYRYRVLNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + +LD + MR AA +L+G HDF+ F + + +RT+ D+N Sbjct: 119 EDPDVFRRHHTAHVLYALDIDKMRQAAAYLIGTHDFSAFCAANTSVIDKVRTLYAVDINV 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FL+ +R VG+L VG GK T+ ++ AL+ R + G APP+GL Sbjct: 179 HEDELHFILRGNGFLYNMVRIIVGTLLEVGYGKRTAESVDTALRTCKRDDAGKTAPPQGL 238 Query: 240 YFDSVEYS 247 Y SV+Y+ Sbjct: 239 YLWSVQYN 246 >gi|52841533|ref|YP_095332.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54297221|ref|YP_123590.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Paris] gi|148358844|ref|YP_001250051.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Corby] gi|296106890|ref|YP_003618590.1| tRNA pseudouridine synthase A [Legionella pneumophila 2300/99 Alcoy] gi|62901237|sp|Q5X5Q4|TRUA_LEGPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901247|sp|Q5ZVY6|TRUA_LEGPH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228736|sp|A5IBF5|TRUA_LEGPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52628644|gb|AAU27385.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751006|emb|CAH12417.1| tRNA-pseudouridine synthase I [Legionella pneumophila str. Paris] gi|148280617|gb|ABQ54705.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Corby] gi|295648791|gb|ADG24638.1| tRNA pseudouridine synthase A [Legionella pneumophila 2300/99 Alcoy] Length = 262 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q +IQ ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVVEYDGSQYHGWQAQTGLHTIQQAVEFALSKVADSSISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ N +L I + + + FHAR+SA+ R Y Y I Sbjct: 61 IHFDCEKDRSIRAWIHGANTFL--PKDICVKWGKEMPENFHARYSAVSRRYRYVIYNGAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L +G + LD M+ Q L+G +DFT+FRS+ CQ+++P+R I V G Sbjct: 119 RPGLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVECQSNTPMRNIHQLQVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ + + A +FLH +R+ G L VG GK ++ L A+DRK AP GLY Sbjct: 179 DLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVLNAKDRKLGAETAPSYGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VQVTYP 244 >gi|90410767|ref|ZP_01218782.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK] gi|90328398|gb|EAS44696.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK] Length = 261 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYCGWQRQVDVDSVQERLEKALSHIANKPIAVFCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V +NA+L IS+ + V FHARFSA R Y Y I Sbjct: 61 VHFDVDVDRQMVAWTIGVNAHL--PRDISVRWATPVSDDFHARFSATARRYRYIIYNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ+LVG HDFT+ R+ CQ+ SP R + H +V+ G Sbjct: 119 RPAIFGIGVSHYHGHLDEKKMHEAAQYLVGEHDFTSVRASQCQSRSPWRAMKHVNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ T ++ L+ +DR+ G A GLY Sbjct: 179 DFVIIDIKANAFVHHMVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAGLYL 238 Query: 242 DSVEYS 247 +V+Y Sbjct: 239 VAVDYP 244 >gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Bacillus halodurans C-125] gi|8134764|sp|Q9Z9J0|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4512436|dbj|BAA75303.1| truA homologue (identity of 62% to B. subtilis ) [Bacillus halodurans] gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Bacillus halodurans C-125] Length = 263 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 124/240 (51%), Gaps = 3/240 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + + Y+G+ + G+Q Q N ++QG +E + + G + V +GRTD+GVHA Sbjct: 1 MKRIGLKVAYDGTDFAGYQIQPNERTVQGELESVLKNIHKGMSIRVTASGRTDTGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+ HFD + ALN+ L I +L + V FHAR+SA + Y YR++T Sbjct: 61 QIVHFDTSLSFPVDRWPIALNSQL--PADICVLEAADVPADFHARYSAKTKEYRYRVLTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + LD E M+ AA L+G HDF++F + + +RTI+ + Sbjct: 119 AQADVFRRNYTYHVRYPLDVEAMQRAAVQLLGTHDFSSFCAAKAEVEDKVRTIEDVALWR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL+ +R VG+L +G GK ++ ++ K L A+ R+ G AP GL Sbjct: 179 EGDELIFSIRGNGFLYNMVRIIVGTLLEIGAGKRSAEEVAKILAARSREAAGKTAPGHGL 238 >gi|291562296|emb|CBL41112.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4] Length = 344 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 129/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KA+ + E V V GA RTDSGVHA Sbjct: 1 MRRIKLTVAYDGTAYKGWQLQPNGVTIEEMLNKALSDLLKEPVCVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD C A+N L + I ++ V +H R ++Y Y+I+ + Sbjct: 61 VAVFDTESRIPGDKFCYAVNRGL--PEDIRVVESEEVPLDWHPRKQNCVKTYEYQILNCK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 + + A L+ E M AA++L+G HDF +F + + QA +RTI +V Sbjct: 119 IEIPTRRLYAHFCYYPLNVEKMNEAAKYLIGEHDFISFCAANHQAEETVRTIYGAEVKKN 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ IR+ FL+ +R G+L VG G+W +++ L+A++RKE G AP +GL Sbjct: 179 DEDIVTIRLCGSGFLYNMVRIIAGTLLKVGTGEWEPEHVKEVLEARNRKEAGQTAPAKGL 238 Query: 240 YFDSVEYS 247 +EY Sbjct: 239 TLVGIEYE 246 >gi|168178866|ref|ZP_02613530.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|226950899|ref|YP_002805990.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] gi|182670055|gb|EDT82031.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|226843785|gb|ACO86451.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] Length = 246 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 136/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSKPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR++ G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRRKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|319760619|ref|YP_004124557.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str. BVAF] gi|318039333|gb|ADV33883.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str. BVAF] Length = 255 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 140/247 (56%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y GWQ+QKNG S+Q +E A+ +VT E V V AGRTDSGVHAL Q Sbjct: 1 MQKIALGIEYDGSRYCGWQKQKNGISVQDCVENALNIVTAESVSVFCAGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ ++ +N YL +I I +S++ + FHARFSA+ R Y Y I + Sbjct: 61 VVHFETDVKYSKSAWTFGVNRYL--PRSICIRWVSLMKQDFHARFSAVSRRYYYYIYNDK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + W K LD M AAQ+L+G +DF+ FRS CQ+ S R + H V Sbjct: 119 IRSAILFQKTWHYTKLLDVCKMSRAAQYLLGENDFSAFRSAGCQSYSRCRNLYHLRVIRI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A SFL+ +R+ VGSL VG G + + + L++ R G AP +GLY Sbjct: 179 GQCVIIDIQANSFLYRMVRNIVGSLVEVGCGNRPAIWILELLKSCKRSLAGMTAPADGLY 238 Query: 241 FDSVEYS 247 V+Y Sbjct: 239 LAEVKYP 245 >gi|148263121|ref|YP_001229827.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4] gi|189030134|sp|A5GB00|TRUA_GEOUR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146396621|gb|ABQ25254.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4] Length = 244 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +IIEY+G+ Y GWQ Q NG +IQ IE ++ + GE V +H +GRTD+GVHAL Sbjct: 1 MRQIKLIIEYDGTNYSGWQVQPNGITIQQLIEASLATMLGEPVKLHSSGRTDAGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + LNA L + I+I + F+ R A + Y Y I Sbjct: 61 VAAFKTGKLLPLRAFSDGLNALL--PNDIAIRDAVEAPLSFNPRADAKSKHYRYTIYNAV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + +LD E M+ AA H VG HDF FR+ +C A + +R + V Sbjct: 119 RRSPLARLSSWHLRGALDIERMQAAASHFVGEHDFAAFRASNCAAKTTVRRLFSVSVAKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I V FL +R G+L VG GK + L + DR G APP+GL Sbjct: 179 GESVIIDVHGSGFLKNMVRIIAGTLAEVGQGKKNPDAVPGLLVSGDRAASGITAPPQGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVEVFY 244 >gi|241663409|ref|YP_002981769.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12D] gi|309783472|ref|ZP_07678175.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_7_47FAA] gi|240865436|gb|ACS63097.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12D] gi|308917758|gb|EFP63452.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_7_47FAA] Length = 274 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 89/251 (35%), Positives = 135/251 (53%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLESALRQFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTDLVREPFSWVRGTNAFL--PPTVAVRWAQEMPEGFHARFSAHRRTYYYALTFGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L + +A + +SLD E M AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLEDKAGYVMLPPGQSLDVEAMNEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSVE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + L A+ R P P Sbjct: 179 VRGEGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRQPVSWMGDVLAARSRVAAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 239 DGLYLAEVGYP 249 >gi|322807772|emb|CBZ05347.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065] Length = 246 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSQPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKRKPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|228919092|ref|ZP_04082471.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840617|gb|EEM85879.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 252 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 184 QDDEIIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|126697674|ref|YP_001086571.1| tRNA pseudouridine synthase 1 [Clostridium difficile 630] gi|254973765|ref|ZP_05270237.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-66c26] gi|255091155|ref|ZP_05320633.1| tRNA pseudouridine synthase 1 [Clostridium difficile CIP 107932] gi|255099266|ref|ZP_05328243.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-63q42] gi|255305049|ref|ZP_05349221.1| tRNA pseudouridine synthase 1 [Clostridium difficile ATCC 43255] gi|255312809|ref|ZP_05354392.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-76w55] gi|255515568|ref|ZP_05383244.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-97b34] gi|255648663|ref|ZP_05395565.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-37x79] gi|260681880|ref|YP_003213165.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196] gi|260685478|ref|YP_003216611.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291] gi|306518785|ref|ZP_07405132.1| tRNA pseudouridine synthase ACD [Clostridium difficile QCD-32g58] gi|115249111|emb|CAJ66922.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile] gi|260208043|emb|CBA60248.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196] gi|260211494|emb|CBE01638.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291] Length = 243 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+YNG Y GWQ+Q + IQG+IE+AI+ +T E + G+GRTDSGVHA+ Q Sbjct: 1 MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETSLIGSGRTDSGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F + + ALNA L IS++ V+ FH+R+SA ++Y Y + + Sbjct: 61 IANFKINSGISIESIPMALNAKL--PKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ + LD + M A+ L+G HDF F S +RTI D++ Sbjct: 119 FRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSGSSVKDTVRTIYDIDISKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI + FL+ +R VG+L +G G+ +Q++ R CG AP +GL+ Sbjct: 179 DDLITFEISGNGFLYNMVRIIVGTLVDMGRGRIN-EPFLDIIQSKTRSRCGHTAPAQGLF 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LKKVHY 243 >gi|260426957|ref|ZP_05780936.1| tRNA pseudouridine synthase A [Citreicella sp. SE45] gi|260421449|gb|EEX14700.1| tRNA pseudouridine synthase A [Citreicella sp. SE45] Length = 255 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 112/251 (44%), Positives = 156/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYDGGPFAGWQRQADQPSVQGAIEAALARLEPREHTIAAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK ++I + V +HARFSA+ R Y +R++ R+ Sbjct: 61 VAHCDMAKPWDPFRLSEALNFHLK-PAPVAIRACAAVADDWHARFSAVERRYTFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP LE G+ W + LD M+ A HL+G HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATLEAGQVWRVMNPLDLGAMQEGAAHLLGLHDFTTFRSTMCQAASPVKTLDEIRIEEC 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ PP Sbjct: 180 DTGAGPEYRFHLRARSFLHNQVRSIVGTLERVGAGSWAPEDVKHALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 DGLYLTGVGYP 250 >gi|152973988|ref|YP_001373505.1| tRNA pseudouridine synthase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022740|gb|ABS20510.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I+ + ++FHAR+ +++ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWGNALNTLL--PDDIVIVQVEKKTEEFHARYGVVKKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P +D + +R A + +G HDFT+F S +RTI D+ Sbjct: 119 KTADVFRRNYVYQYPYPIDIQLIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIDLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + R V FL+ +R VG+L VG GK + + L QDR+ G + P GL Sbjct: 179 QGDELVFRFVGNGFLYNMVRIIVGTLLSVGQGKVDPDSIPEILAKQDRRFAGKMVPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|85703371|ref|ZP_01034475.1| tRNA pseudouridine synthase A [Roseovarius sp. 217] gi|85672299|gb|EAQ27156.1| tRNA pseudouridine synthase A [Roseovarius sp. 217] Length = 257 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 119/251 (47%), Positives = 162/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQVDHPSVQGAIEAALGRIEPGPHTIAAAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W L +ALN +LK ++I + V + +HARFSA R YL+RI++R+ Sbjct: 61 VAHCDLPRDWGTFRLSEALNYHLK-PLPVAITGCARVPEDWHARFSATERQYLFRILSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP+ L++GR W + LD + MR A HL+G HDFTTFRS CQA+SPI+T+D +++ Sbjct: 120 APVTLDQGRVWHVRPMLDIDAMRAGAAHLIGTHDFTTFRSTICQAASPIKTLDSIEISEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I ++ ARSFLH Q+RS VG+L+ VG G W + AL A+DR CGP+ PP Sbjct: 180 STPTGTEIHFQLRARSFLHNQVRSIVGTLERVGAGSWHPDQVRGALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 YGLYLAHVVYE 250 >gi|218230830|ref|YP_002364991.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228950690|ref|ZP_04112824.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229077443|ref|ZP_04210092.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2] gi|229148551|ref|ZP_04276807.1| tRNA pseudouridine synthase A [Bacillus cereus m1550] gi|229176742|ref|ZP_04304146.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W] gi|218158787|gb|ACK58779.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228606785|gb|EEK64202.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W] gi|228634967|gb|EEK91540.1| tRNA pseudouridine synthase A [Bacillus cereus m1550] gi|228705869|gb|EEL58206.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2] gi|228809041|gb|EEM55526.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 252 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWINALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QNDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|83951133|ref|ZP_00959866.1| tRNA pseudouridine synthase A [Roseovarius nubinhibens ISM] gi|83839032|gb|EAP78328.1| tRNA pseudouridine synthase A [Roseovarius nubinhibens ISM] Length = 258 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 121/251 (48%), Positives = 168/251 (66%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYHGAPFAGWQRQKDQPSVQGAIEAALSALEPGAHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK ++I + V + +HARFSA+ R YL+R++TR+ Sbjct: 61 VAHCDLRRDWDPFRLSEALNYHLK-PAPVAITACAPVAEDWHARFSALERRYLFRLLTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W IP LD + M+ A +HLVGRHDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGLVWQIPHRLDTDAMQTACRHLVGRHDFTTFRSSICQAASPVKTLDELTITEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + + ARSFLH Q+RSFVG+L+ VG G+W+ D++ AL A++R CGP++PP Sbjct: 180 EGVSGWEVRFFLRARSFLHNQVRSFVGTLERVGAGRWSPDDVKAALDARNRAACGPVSPP 239 Query: 237 EGLYFDSVEYS 247 GLY VEY Sbjct: 240 HGLYLAGVEYP 250 >gi|229587225|ref|YP_002845726.1| tRNA pseudouridine synthase A [Rickettsia africae ESF-5] gi|259550437|sp|C3PLZ3|TRUA_RICAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|228022275|gb|ACP53983.1| tRNA pseudouridine synthase A [Rickettsia africae ESF-5] Length = 245 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 107/246 (43%), Positives = 148/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ S I+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSSIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQVEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM 12680] gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM 12680] Length = 244 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++EY G+ Y G+QRQ G +I+G +E AI +TGE V V AGRTD+GVHAL Q Sbjct: 1 MNRIKALVEYEGTRYSGFQRQPRGLTIEGELEAAICKLTGERVKVLAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD P ALN+ L I +L + FH R+ A ++Y Y I ++ Sbjct: 61 VIAFDTESPIPPERFAPALNSVL--PSDIRVLKSEKAKEGFHPRYQARAKAYRYLIYRQE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ P+ LD M AA+++ G HDF F + + +RT+ +N Sbjct: 119 EGRTFYRNLAYYYPQPLDLPAMAKAARYMEGTHDFMAFCASGSGVRNYVRTVFEVSINEK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I V FL+ +R VG+L VG + ++E+ L ++DR+ GP P GLY Sbjct: 179 PPFLQIDVCGDGFLYNMVRIMVGTLLEVGRKRLAPEEVEQILLSRDRQRAGPTVPACGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LKRVFY 244 >gi|226322882|ref|ZP_03798400.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758] gi|225208668|gb|EEG91022.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758] Length = 256 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 119/246 (48%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KAI +TGE + V GA RTDSGVHA Sbjct: 9 MRRIRLTVAYDGTNYCGWQIQPNGITIEEVLNKAICKLTGEEIQVIGASRTDSGVHARGN 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD ALN L I ++ VD +H R+ ++Y Y II + Sbjct: 69 IAVFDTESRIPAERFSYALNQRL--PKDIVVVKSDEVDLNWHPRYQDTLKTYEYHIINTK 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + + LD MR A +L G HDF F I A + +RTI + Sbjct: 127 VPIPTERLYNYFVSFDLDVGQMRRGAAYLEGEHDFAPFCCIRTNAKTTVRTITDLQILQS 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R G L VG G + +++ L+ +R APP+GL Sbjct: 187 GEHITIRITGNGFLYNMVRIIAGVLVRVGRGFYEPEKVKELLEGGERTREAVTAPPQGLC 246 Query: 241 FDSVEY 246 + Y Sbjct: 247 LMEIRY 252 >gi|325294776|ref|YP_004281290.1| tRNA pseudouridine synthase A [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065224|gb|ADY73231.1| tRNA pseudouridine synthase A [Desulfurobacterium thermolithotrophum DSM 11699] Length = 250 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY G+ YFGWQ +IQG I K + + V + GA RTD+GVHA Q Sbjct: 1 MKNIKLTIEYLGTNYFGWQILPEKPTIQGEIIKVLERILQHPVKLTGASRTDAGVHAFGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +E L ALN L I I+++ V +F +R A + Y YRI R+ Sbjct: 61 VANFKTKKEIPLYKLQSALNGLL--PPDIKIISVEEVPLEFDSRRWAKGKRYRYRIFNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNS 179 P E R+W +P LD M A + L+G DFT+F +P+RT+D+ ++ Sbjct: 119 VPSPFEYKRSWFVPYQLDISLMEKAKEFLIGTFDFTSFSKSDRNVDINPVRTVDNIEIVK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I+ RSFL +R V +L VG GK D+++ + ++RK LAPP+GL Sbjct: 179 KESHIDFIFYGRSFLRHMVRIMVATLVEVGKGKLRPEDIKEIREKKNRKFAPFLAPPDGL 238 Query: 240 YFDSVEYS 247 Y + V Y Sbjct: 239 YLEKVYYD 246 >gi|320540467|ref|ZP_08040117.1| pseudouridylate synthase I [Serratia symbiotica str. Tucson] gi|320029398|gb|EFW11427.1| pseudouridylate synthase I [Serratia symbiotica str. Tucson] Length = 273 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQ+Q+ +S+QG +E+A+ V + V AGRTDSGVHA QV Sbjct: 12 QKIALGIEYDGSRYYGWQQQREVASVQGCLEQALSKVADAPINVLCAGRTDSGVHATGQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N +L I++ +S V FHARFSAI R Y Y I + Sbjct: 72 VHFETSARRKDAAWSMGVNTHL--PPDIAVRWVSAVADDFHARFSAIARRYRYIIYNHRN 129 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD M AAQ L+G +DFT+FR+ CQ+ +P R + H V G Sbjct: 130 RPAVLQQGVTHFYHPLDAVRMHRAAQALLGENDFTSFRAAQCQSRTPWRKVKHVKVTRQG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +G GK L + L +DR A EGLY Sbjct: 190 EYIVVDIKANAFVHHMVRNIVGSLMEIGCGKRNENWLAELLALRDRNLAAATARAEGLYL 249 Query: 242 DSVEYS 247 SV+Y Sbjct: 250 VSVDYP 255 >gi|225630801|ref|YP_002727592.1| tRNA pseudouridine synthase A [Wolbachia sp. wRi] gi|254764876|sp|C0R4F9|TRUA_WOLWR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225592782|gb|ACN95801.1| tRNA pseudouridine synthase A [Wolbachia sp. wRi] Length = 245 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 114/246 (46%), Positives = 154/246 (62%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS C A++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I I++ A SFLH Q+R G+L G + ++ L R G APP GLY Sbjct: 180 GNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQCKRSAAGVTAPPFGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|254475915|ref|ZP_05089301.1| tRNA pseudouridine synthase A [Ruegeria sp. R11] gi|214030158|gb|EEB70993.1| tRNA pseudouridine synthase A [Ruegeria sp. R11] Length = 256 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 119/251 (47%), Positives = 161/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIEDALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK ++I++ + VD +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDMAKAWDPFRLSEALNYHLK-PAPVAIVDCAQVDDDWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G+ W + LD M+ AA HLVG+HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDAGQVWQLSHDLDVAAMQEAADHLVGQHDFTTFRSSICQAASPLKTLDELRVERV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWDPVDVKDALEACDRAACGPVCPG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLARVGYP 250 >gi|293390012|ref|ZP_06634346.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950546|gb|EFE00665.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D7S-1] Length = 261 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQRQ+ +SIQ +E+AI ++ E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKHYFGWQRQEKVASIQAELERAISVIANEDIGIFCAGRTDSGVHAAGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L D I++ +V+ FHARFSA R Y Y + + Sbjct: 61 IHFETTAQRPEKAWSFGVNANL--PDDIAVRWAKVVEDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V G Sbjct: 119 RSAILPQGVTHCHLELDHQLMHDAGQALLGENDFSSFRAAQCQSNTPWRNVHHLNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG ++ L+ +DR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCCNQPVEWMKWLLEQKDRALAAPTAKPEGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VNVIYP 244 >gi|77164531|ref|YP_343056.1| pseudouridylate synthase [Nitrosococcus oceani ATCC 19707] gi|254433109|ref|ZP_05046617.1| tRNA pseudouridine synthase A [Nitrosococcus oceani AFC27] gi|123594636|sp|Q3JCC0|TRUA_NITOC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76882845|gb|ABA57526.1| Pseudouridylate synthase [Nitrosococcus oceani ATCC 19707] gi|207089442|gb|EDZ66713.1| tRNA pseudouridine synthase A [Nitrosococcus oceani AFC27] Length = 259 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ QK ++Q ++E+A+ V E V V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGSNFSGWQSQKGVRTVQATLEQALSAVANEPVTVITAGRTDAGVHAAAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L ++IL V++ FHARFSAI R Y Y I+ R A Sbjct: 61 VHFDTATFRLEHNWVFGGNANLL--PEVAILWAQPVNEAFHARFSAIARHYRYIILNRGA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ R + L M+ A LVG HDF++FR+ CQA SP+R + + +V G Sbjct: 119 RPAIANRRVTWYCQPLSVTKMKEAGAFLVGEHDFSSFRAKACQAKSPVRNVHYLEVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +FLH +R+ G L +G G+ E+ LQA+ R G A P+GLY Sbjct: 179 DWIVIDISANAFLHHMVRNIAGVLMAIGKGEQPPRWAEEVLQARCRAVGGVTARPDGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VRVDYP 244 >gi|183599662|ref|ZP_02961155.1| hypothetical protein PROSTU_03151 [Providencia stuartii ATCC 25827] gi|188021916|gb|EDU59956.1| hypothetical protein PROSTU_03151 [Providencia stuartii ATCC 25827] Length = 271 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS Y+GWQRQ+ S+QG +E A+ V + V AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYYGWQRQQEVKSVQGCLEDALSKVANHPINVFCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD +N +L + I++ VD++FHARFSA R Y Y I + Sbjct: 69 HFDTPVIRKEAAWTMGVNTHL--PEDIAVRWCKPVDEEFHARFSATARRYRYVIFNHRYR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H V GN Sbjct: 127 PAILSSGVTHFHYPLDEKKMHEAAQALLGENDFTSFRAVQCQSRTPWRNVMHVQVTRHGN 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L+ +DR + A +GLY Sbjct: 187 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDINWMAQLLELKDRTKAAATAKADGLYLV 246 Query: 243 SVEYS 247 SV+Y Sbjct: 247 SVDYP 251 >gi|312144215|ref|YP_003995661.1| tRNA pseudouridine synthase A [Halanaerobium sp. 'sapolanicus'] gi|311904866|gb|ADQ15307.1| tRNA pseudouridine synthase A [Halanaerobium sp. 'sapolanicus'] Length = 248 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y + +EY+GS Y GWQRQKN +IQ +E A+ + V V G+GRTD+GVHA Q Sbjct: 4 NYKITLEYDGSNYSGWQRQKNTKETIQEKLENALSKINKNKVEVIGSGRTDAGVHAAGQT 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F L + + A+N +L D I V K FHAR+ A + Y YRI+ Sbjct: 64 ANFFLDIQIPTYKIPIAINTHL--PDDIICYKAEKVAKDFHARYDARGKKYRYRILNSNF 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + + + LD + M+ A+ +G HDF F S S IR I FD+NS Sbjct: 122 NSVFVRNYVYKVHQRLDLDIMQKGAKIFLGSHDFAAFCSAGSSVDSTIREIYSFDINSKT 181 Query: 182 N-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N I+I + FL+ +R VG+L + GK DLE+ L R+ G AP +GL Sbjct: 182 NGEIQIDISGSGFLYNMVRILVGTLIELAKGKRNLADLEEILAGTQRERAGFTAPAKGLT 241 Query: 241 FDSVEYS 247 V Y Sbjct: 242 LLEVFYD 248 >gi|148381387|ref|YP_001255928.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 3502] gi|153931537|ref|YP_001385762.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|153934471|ref|YP_001389169.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] gi|148290871|emb|CAL85007.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC 3502] gi|152927581|gb|ABS33081.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|152930385|gb|ABS35884.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] Length = 246 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNIL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSKPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|34581081|ref|ZP_00142561.1| pseudouridylate synthase I [Rickettsia sibirica 246] gi|28262466|gb|EAA25970.1| pseudouridylate synthase I [Rickettsia sibirica 246] Length = 245 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 107/246 (43%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ S I+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSSIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|110803601|ref|YP_698382.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] gi|110684102|gb|ABG87472.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] Length = 248 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + K +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIKYINEYL--PEDIRVKEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|312874027|ref|ZP_07734062.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d] gi|312874727|ref|ZP_07734746.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b] gi|325912360|ref|ZP_08174756.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D] gi|329920629|ref|ZP_08277316.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G] gi|311089472|gb|EFQ47897.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b] gi|311090367|gb|EFQ48776.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d] gi|325475831|gb|EGC79001.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D] gi|328935887|gb|EGG32347.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G] Length = 260 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALM--PRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A++R++ AP G Sbjct: 179 QHGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNTAPASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLYHVFYD 247 >gi|42520874|ref|NP_966789.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila melanogaster] gi|51316700|sp|Q73G93|TRUA_WOLPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42410614|gb|AAS14723.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila melanogaster] Length = 245 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 117/246 (47%), Positives = 157/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE V ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E+ + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKEFELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS CQA++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCQAANPIRTIDDIDIIQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I I++ A SFLH Q+R VG+L G + ++ L R G APP GLY Sbjct: 180 GNHIHIKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILNQCKRSAAGVTAPPFGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|114331148|ref|YP_747370.1| tRNA pseudouridine synthase A [Nitrosomonas eutropha C91] gi|122313976|sp|Q0AGX7|TRUA_NITEC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114308162|gb|ABI59405.1| tRNA pseudouridine synthase A [Nitrosomonas eutropha C91] Length = 277 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I+EY+G GY GWQ+Q + S+Q +E A+ + + V AGRTD+GVHAL QV Sbjct: 1 MKIVLILEYDGRGYCGWQKQPDRISVQSRLESALSRIASSQIQVVAAGRTDAGVHALCQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + NA L D IS+L S V+ FHARFSA R+YLY +++R A Sbjct: 61 VHFETHVIRPLTAWVRGANALL--PDDISVLWASEVNDDFHARFSATERTYLYYLLSRPA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +G+ SLD E M+ AA+ L+G HDF+ FRS CQA + IR + D++ Sbjct: 119 RPGIFQGKTGWTHYSLDLEKMQTAARFLIGEHDFSAFRSAECQAKNAIRKLVRLDISQSE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH +R+ +G+L +G GK+ ++ L +DR P P+GLY Sbjct: 179 QFFVFEFCANAFLHHMVRNILGALIYIGQGKYPPEWIQILLGKRDRTLAAPTFSPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AGVRYD 244 >gi|18309973|ref|NP_561907.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13] gi|24212547|sp|Q8XLQ0|TRUA1_CLOPE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13] Length = 248 Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|187929218|ref|YP_001899705.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12J] gi|238689527|sp|B2U6Z1|TRUA_RALPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187726108|gb|ACD27273.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12J] Length = 274 Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 135/251 (53%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q ++E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDALESALRQFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTDLVREPFSWVRGTNAFL--PPTVAVRWAQEMPEDFHARFSAHRRTYYYALTFGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L + +A + +SLD M AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLEDKAGYVMLPPGQSLDVAAMNEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + L A+ R P P Sbjct: 179 VRGEGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRQPVSWMGDVLAARSRVAAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 239 DGLYLAEVGYP 249 >gi|54309813|ref|YP_130833.1| tRNA pseudouridine synthase A [Photobacterium profundum SS9] gi|51316618|sp|Q6LNU5|TRUA_PHOPR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46914251|emb|CAG21031.1| Putative tRNA pseudouridine synthase A [Photobacterium profundum SS9] Length = 261 Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYCGWQRQVDVDSVQERLEKALSHIANKPIAVFCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V +NA+L IS+ + V FHARFSA R Y Y I Sbjct: 61 VHFDVDVDRQMVAWTIGVNAHL--PRDISVRWATQVSDDFHARFSATARRYRYIIYNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ+LVG HDFT+ R+ CQ+ SP R + H +V+ G Sbjct: 119 RPAIFGVGVSHYHGHLDEKKMHEAAQYLVGEHDFTSVRASQCQSRSPWRAMKHVNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ T ++ L+ +DR+ G A GLY Sbjct: 179 DFVIIDIKANAFVHHMVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAGLYL 238 Query: 242 DSVEYS 247 +V+Y Sbjct: 239 VAVDYP 244 >gi|254510182|ref|ZP_05122249.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11] gi|221533893|gb|EEE36881.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11] Length = 255 Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats. Identities = 121/251 (48%), Positives = 162/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQK S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYHGEPFAGWQRQKEQPSVQGAIEAALSRIEPGDHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK ++I+ + V+ +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDLTKDWDPFRLSEALNYHLK-PQPVAIVKAARVNDDWHARFSALERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP +KG+ W I +LD M+ A L+G+HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDKGQVWQINHTLDVAAMQAGADMLIGQHDFTTFRSSICQAASPVKTLDALRVEQV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G WT D+ AL+A DR CGP+ PP Sbjct: 180 QGFSGAEIHFHVRARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALEAADRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLARVGYP 250 >gi|225018926|ref|ZP_03708118.1| hypothetical protein CLOSTMETH_02877 [Clostridium methylpentosum DSM 5476] gi|224948306|gb|EEG29515.1| hypothetical protein CLOSTMETH_02877 [Clostridium methylpentosum DSM 5476] Length = 250 Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I YNG+ Y GWQ QKN ++Q ++ A+ + G V G RTD+GVHA Sbjct: 3 MRNLLVKIAYNGAAYHGWQVQKNALTVQEVVQDAVEKLFGRREDVVGCSRTDTGVHANEY 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + ++ + + +N L D +++L + V++ FHAR+ + Y+Y+I + Sbjct: 63 FFNMHTEKDIPCRSVMRGMNTLL--PDDVAVLGCTEVEEDFHARYCCTGKEYIYKIWNAE 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + P LD + + A + +G HDF+ F S +RTI + Sbjct: 121 SRNPFLHRQCLRYPFPLDIQLLNRAMERFLGTHDFSAFCSAGSDVEDRVRTITQAHASRE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ + V FL+ +R VG+L V +GK + D+ + ++DR G APP GL+ Sbjct: 181 GDLVTLTVRGDGFLYNMVRILVGTLIEVQEGKLSPDDIPSVIASRDRSRAGKTAPPCGLF 240 Query: 241 FDSVEY 246 + V Y Sbjct: 241 LNRVFY 246 >gi|255604972|ref|XP_002538318.1| pseudouridylate synthase, putative [Ricinus communis] gi|223512770|gb|EEF24066.1| pseudouridylate synthase, putative [Ricinus communis] Length = 283 Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ Q +G+++Q ++ A+ + G V V AGRTD+GVHAL QV Sbjct: 25 MRVVLGLEYDGSRFCGWQSQPSGAAVQDCLQTALAQMAGHEVKVSAAGRTDAGVHALSQV 84 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + +NA+L + +L S VD +FHARFSA RRSY Y + Sbjct: 85 AHFDTAVTRPQNAWVRGVNAFL--PTGVRVLWASEVDVEFHARFSAERRSYQYVLQVSPV 142 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+ + LD + MR AA L+G HDF+ FR+ CQA +PI+ + D+ F Sbjct: 143 APAVLSGKVGWYHRPLDLKAMRNAASILLGEHDFSAFRASECQAKTPIKHLIQADIRQFD 202 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+I A +FLH +R+ VGSL VG G+ + L+ +DR+ P P+GLY Sbjct: 203 NVILFEFTASAFLHHMVRNLVGSLVYVGKGEHPPEWMRTLLEQKDRRLAAPTFMPDGLYL 262 Query: 242 DSVEYS 247 V Y Sbjct: 263 TGVHYD 268 >gi|58584685|ref|YP_198258.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419001|gb|AAW71016.1| Pseudouridylate synthase (tRNA psi55) [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 249 Score = 294 bits (753), Expect = 9e-78, Method: Composition-based stats. Identities = 117/246 (47%), Positives = 156/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+Q++ +SIQ +IE AIF +GE V +H GRTD+GVHAL Q Sbjct: 5 VRYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGEKVTLHCGGRTDAGVHALGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ R++ + A+N +LK S I +LN VD FH+RFSA +R Y YRII R Sbjct: 65 VAHFDMERKFELYKIRNAINYHLK-SIPIVVLNAETVDNTFHSRFSAKKRYYEYRIINRY 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G AW + LD MR AA++L+G+H+ +FRS CQA++PIRTID D+ Sbjct: 124 APAALEAGYAWQVFNPLDVNIMREAAKYLLGKHNLLSFRSKDCQATNPIRTIDDIDIVQN 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I++ A SFLH Q+R VG+L G + + L R G APP GLY Sbjct: 184 GSHIYIKISAISFLHNQVRIIVGTLVEFGKSRTNPQKMLNILNQCKRNAAGVTAPPFGLY 243 Query: 241 FDSVEY 246 ++Y Sbjct: 244 LAKIDY 249 >gi|110800554|ref|YP_695694.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|110675201|gb|ABG84188.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] Length = 248 Score = 294 bits (752), Expect = 9e-78, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVKEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|254447334|ref|ZP_05060801.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC5015] gi|198263473|gb|EDY87751.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC5015] Length = 261 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 102/246 (41%), Positives = 140/246 (56%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G+ Y GWQRQ NG S+Q +E+++ V V V AGRTD+GVHA +QV Sbjct: 1 MKIALGVEYDGTAYHGWQRQNNGISVQQVLEESLSKVANHGVQVQCAGRTDTGVHATQQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + NA L +S+ V FHARFSA R Y Y I++R + Sbjct: 61 VHFESSAQRSIRNWILGANANL--PFDVSVRWAKQVSDDFHARFSAQGRRYRYLILSRYS 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL RA K LD E M+ AAQHLVGRHDF+++R++HCQA SP+RT+ +V G Sbjct: 119 RSALWGRRATWTHKPLDLEVMQQAAQHLVGRHDFSSYRAVHCQAKSPVRTLHSLEVGRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V FLH +R+ G L +G G+ + L+ +DR+ G APP GLYF Sbjct: 179 DFIYIDVHGDGFLHHMVRNIAGVLMAIGAGEAVPDWSREVLEHRDRRLGGVTAPPWGLYF 238 Query: 242 DSVEYS 247 EY Sbjct: 239 VHAEYP 244 >gi|90422327|ref|YP_530697.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18] gi|123089809|sp|Q21B58|TRUA_RHOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|90104341|gb|ABD86378.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18] Length = 245 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 131/246 (53%), Positives = 172/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ Y GWQ Q NG S+QG++E A+ + G+ V V+GAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGAPYCGWQIQDNGPSVQGALETAVKAICGKFVRVNGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +E+ P L LNA+L+ I +L+ IV F ARFSAI+R Y+YRI R+ Sbjct: 61 VAHCDIAKEFAPGRLRDGLNAHLR-PHPIGVLSAEIVPDDFEARFSAIKRHYVYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G+ W +P+ LD + M AAQ LVG+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALQIGKVWRLPRRLDTDAMHAAAQRLVGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDNVSIITSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRTACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|322381099|ref|ZP_08055102.1| tRNA pseudouridine synthase A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154675|gb|EFX46946.1| tRNA pseudouridine synthase A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 252 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 130/254 (51%), Gaps = 9/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+G+ Y G+Q Q +G+++Q +E+AI ++TGE V + +GRTD+GVHA Q Sbjct: 1 MRNLRFTLSYDGTSYSGFQTQPDGNTVQDQLEEAIHMLTGEKVKITSSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALN+ L I + V FH+R SA R++Y Y I T + Sbjct: 61 VVNFLTSSRIPVDRWCLALNSRL--PRDIVVYEAEEVSLTFHSRKSAKRKTYCYEIRTSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + P L+ E M+ A +G HDFT+F + + +RTI + Sbjct: 119 FPDVFHRAFEVHYPTPLNIEAMKEALSCFIGTHDFTSFCTTRTTMENRVRTIYEARLEYL 178 Query: 181 GN-------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + LI+I + FL+ +R VG++ VG+GK S+++ L A+DR++ GP Sbjct: 179 PDQDDPARGLIQIYLTGSGFLYNMVRIIVGTILQVGEGKEKSSEIPVILAAKDRRKAGPT 238 Query: 234 APPEGLYFDSVEYS 247 A +GL VEY Sbjct: 239 AMAKGLTLWKVEYE 252 >gi|260914049|ref|ZP_05920522.1| tRNA pseudouridine synthase A [Pasteurella dagmatis ATCC 43325] gi|260631682|gb|EEX49860.1| tRNA pseudouridine synthase A [Pasteurella dagmatis ATCC 43325] Length = 264 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I+YNG YFGWQRQ+ +S+Q +EKAI V E + AGRTDSGVHA QV Sbjct: 1 MKVALGIQYNGKNYFGWQRQERVASVQEELEKAISFVANEHCQIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D IS+ IVD+ FHARFSA R Y Y + + Sbjct: 61 IHFETNANRPEKAWSFGVNANL--PDDISVSWAKIVDEDFHARFSANARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V G Sbjct: 119 RSAILPKGITHCHLELDHQLMHQAGQVLLGENDFSSFRASQCQSHTPFRNVHHLNVIRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +G G + L +DR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEIGAGHQPVEWMSWLLAQKDRTLAAPTAKPEGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VNVIYP 244 >gi|134293154|ref|YP_001116890.1| tRNA pseudouridine synthase A [Burkholderia vietnamiensis G4] gi|166228688|sp|A4JMC2|TRUA_BURVG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134136311|gb|ABO57425.1| tRNA pseudouridine synthase A [Burkholderia vietnamiensis G4] Length = 270 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + ++Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGVQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VHFDTALDRAEFSWVRGTNAFL--PPTVSVQWAKAMPDTFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAVHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|332559018|ref|ZP_08413340.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N] gi|332276730|gb|EGJ22045.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N] Length = 255 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 122/251 (48%), Positives = 163/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLARDWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SPI+T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASPIKTLDALTLETV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP+ PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|320101703|ref|YP_004177294.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644] gi|319748985|gb|ADV60745.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644] Length = 275 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+R +I+ Y+G+ + GWQRQ ++Q +E A+ +TGE V V +GRTD+GVHAL Sbjct: 1 MLRTLKLILAYDGTEFSGWQRQPGHRTVQEVVESALRPLTGEPVAVTASGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAHF + P + KALNA L + ++ + FHA A + Y Y I Sbjct: 61 QVAHFHTIARHPPEVFLKALNATL--PPDVRVVWAEEAPQSFHATLDAQSKRYRYVIDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AW + + LD M A Q L GRHDF +F + S +RTI V Sbjct: 119 PFADPFLRRTAWHLFRPLDAPRMNRAVQALRGRHDFRSFETNWPNRMSSVRTILDVQVRR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+ V A FL+ +RS G+ LVG G T + + L AQDR+ GP APP+GL Sbjct: 179 IDHRVELEVEADGFLYNMVRSIAGTAVLVGLGDRPETFVAEVLHAQDRRLAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 FLLQVRY 245 >gi|77464142|ref|YP_353646.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides 2.4.1] gi|123591335|sp|Q3J0D9|TRUA_RHOS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77388560|gb|ABA79745.1| tRNA pseudouridine synthase [Rhodobacter sphaeroides 2.4.1] Length = 255 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 123/251 (49%), Positives = 165/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVREW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVREWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SP++T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDPEAMRAGAAHLVGRHDFTTFRAAGCQAASPVKTLDALTLETV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP++PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVSPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|303257106|ref|ZP_07343120.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47] gi|302860597|gb|EFL83674.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47] Length = 259 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G ++Q +E A+ TGE V AGRTD+ VHA QV Sbjct: 1 MRVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D + + + LN+YL ++ +V +FHARFSA R+Y Y I+ Sbjct: 61 IHLDTGADRKEISWVRGLNSYL--PTECAVRWAKVVPDEFHARFSACSRTYEYWIVNEPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + + L+ +NM A Q LVG HDF++FR+ CQ+ +P++ I++ V G Sbjct: 119 RSPILSGRTGWVFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVKNIEYLHVIRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+IRV A +FL+ +R+ VG L VG G + + + L+A+ R+ P P GLY Sbjct: 179 RFIKIRVKANAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 TGVGYP 244 >gi|167748465|ref|ZP_02420592.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662] gi|167652457|gb|EDR96586.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662] Length = 252 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q ++I+G + + + + GE + V GA RTDSGVHAL Sbjct: 1 MKRIKLEVAYDGTNYCGWQIQPKDTTIEGILNEKLGSLLGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD E + +ALN L D I I + S V FH R+ R++Y Y I + Sbjct: 61 VAVFDTETEIPGERIARALNQRL--PDDIVIQSSSEVKDDFHPRYQDTRKTYEYTIYNAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E MR AA+ +G HDF +F + + +RTI +V Sbjct: 119 FDNPVTARHHHFVYVPLDAERMRTAARCFLGEHDFLSFSTTGSPTKTTVRTIYECEVRQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L +G G+ + + R + GP AP +GL Sbjct: 179 GRYITMRVTGNGFLYNMVRMMAGTLISIGRGRKDPEWVRELFLHPKRGKAGPNAPAKGLT 238 Query: 241 FDSVEY 246 ++ Y Sbjct: 239 LINIHY 244 >gi|229170993|ref|ZP_04298594.1| tRNA pseudouridine synthase A [Bacillus cereus MM3] gi|228612533|gb|EEK69754.1| tRNA pseudouridine synthase A [Bacillus cereus MM3] Length = 252 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIKQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEISSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QGDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|91776053|ref|YP_545809.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT] gi|123254255|sp|Q1H0L9|TRUA_METFK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91710040|gb|ABE49968.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT] Length = 261 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 143/246 (58%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+G+ GWQ Q N ++Q ++E A+ + G V V AGRTD+GVHAL QV Sbjct: 1 MRLALGIEYDGAGFCGWQSQPNRLAVQDALESALSQLAGHQVRVSAAGRTDTGVHALSQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N L + +L VD +FHARF A +RSY Y +I + Sbjct: 61 VHFDTEAVRSQTAWVRGVNTKL--PRGVRVLWAKEVDPRFHARFDAYQRSYQYWLINQPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+A + LD + M+ A +L+G+HDF+ FR+ CQA SP++T+ H V++FG Sbjct: 119 APAVMAGKAGWFHQPLDLQAMQEAMAYLLGQHDFSAFRAAECQAKSPVKTMHHASVSAFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A +FLH Q+R+ VG+L +G GK+ + + L+ +DR+ P P+GLY Sbjct: 179 SSMIFDFCASAFLHHQVRNMVGALVYIGKGKYPPVFIAELLEKRDRRCSPPTFSPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 TGVGYD 244 >gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] Length = 248 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|251778715|ref|ZP_04821635.1| tRNA pseudouridine synthase A [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083030|gb|EES48920.1| tRNA pseudouridine synthase A [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 244 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIE++G+ + GWQRQ ++QG +E AI +TGE + +G+ RTD GVHA Sbjct: 1 MRNIKLIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITGEKSLTNGSSRTDGGVHAKAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +ALN L D ISI+ VD +FHAR+S+ + Y Y I+ R Sbjct: 61 VANFITNSSIPGEKFREALNTKL--PDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LA K + K L+ E+M+ A ++ VG+HDF F S A + +RTI F + Sbjct: 119 EKLAFGKQYLHHVRKELNVEDMKKACEYFVGKHDFKAFMSPGSSAKTTVRTITDFYIEEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I I + A FL+ +R VG+L VG GK D+ + RK G PP GL Sbjct: 179 KNVIRIFISADGFLYNMVRIIVGTLINVGTGKTKLQDVNNIINDGIRKNAGMCVPPNGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|152974254|ref|YP_001373771.1| tRNA pseudouridine synthase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023006|gb|ABS20776.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98] Length = 260 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G + GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 16 MNNYKLTIQYDGGRFKGWQRLGNNDNTIQGKIESVLSEMIGQEIEIIGCSRTDAGVHALN 75 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + V + K LN YL + ISI + V ++FHAR+++ ++YLY+I Sbjct: 76 QVANFKVDEKLVETKVKKYLNQYL--PNDISITEVEQVPERFHARYNSKTKTYLYKIWNE 133 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + +PK L+ ENM+ AA + +G HDFT F + + S +R I DV Sbjct: 134 EHTNPFMRKYSMHVPKKLNVENMKQAAHYFIGSHDFTAFSNAKSKKKSMVREIYVLDVFE 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 194 SEGFIQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLADANGL 253 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 254 YLEKVDF 260 >gi|309389901|gb|ADO77781.1| tRNA pseudouridine synthase A [Halanaerobium praevalens DSM 2228] Length = 248 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + Y +I+EY+GS Y GWQRQKN +IQ IE+A+ + V + GAGRTD+GVHA Sbjct: 1 MRKNYKIIVEYDGSNYSGWQRQKNTEQTIQQKIEEALTKINKSQVKIDGAGRTDAGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q A+F L E P + ALN L D I V++ FHAR+ A + Y YRI+ Sbjct: 61 GQSANFFLDVEIPPTKIPIALNTEL--PDDIICKKAIKVNQNFHARYDARGKKYRYRILN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + + K LD + M+ AA+ G HDF +F + S +RTI D+ Sbjct: 119 SNFNSVFVRNFVYNVYKKLDLKMMQKAAKIFEGSHDFASFCAAGSSVESTVRTIRSIDIY 178 Query: 179 SFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + I + +V FL+ +R G+ G GK T ++LE LQ+ +RK G AP + Sbjct: 179 AVDDSEIWLDIVGNGFLYNMVRILAGTFIETGMGKKTLSELEVILQSCNRKNAGFTAPAQ 238 Query: 238 GLYFDSVEYS 247 GL V Y Sbjct: 239 GLTLMEVFYD 248 >gi|229067907|ref|ZP_04201224.1| tRNA pseudouridine synthase A [Bacillus cereus F65185] gi|228715266|gb|EEL67125.1| tRNA pseudouridine synthase A [Bacillus cereus F65185] Length = 252 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTSLSLEEWQWINALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QNDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|229107828|ref|ZP_04237464.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15] gi|228675677|gb|EEL30885.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15] Length = 252 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK S + + L Q+R+ G +AP GL Sbjct: 184 QDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|188590732|ref|YP_001919706.1| tRNA pseudouridine synthase A [Clostridium botulinum E3 str. Alaska E43] gi|238689635|sp|B2UYE4|TRUA_CLOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188501013|gb|ACD54149.1| tRNA pseudouridine synthase A [Clostridium botulinum E3 str. Alaska E43] Length = 244 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIE++G+ + GWQRQ ++QG +E AI +TGE + +G+ RTD GVHA Sbjct: 1 MRNIKLIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITGEKSLTNGSSRTDGGVHAKAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +ALN L D ISI+ VD +FHAR+S+ + Y Y I+ R Sbjct: 61 VANFITNSSIPGEKFREALNTKL--PDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LA K + K L+ E+M+ A ++ +G+HDF F S A + +RTI F + Sbjct: 119 EKLAFGKQYLHHVRKELNVEDMKKACEYFLGKHDFKAFMSPGSSAKTTVRTITDFYIEEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I I + A FL+ +R VG+L VG GK D+ + RK G PP GL Sbjct: 179 KNVIRIFISADGFLYNMVRIIVGTLINVGTGKTKLQDVNNIINDGIRKNAGMCVPPNGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|78221826|ref|YP_383573.1| tRNA pseudouridine synthase A [Geobacter metallireducens GS-15] gi|78193081|gb|ABB30848.1| tRNA pseudouridine synthase [Geobacter metallireducens GS-15] Length = 256 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q NG S+Q +E+A+ + E V VH +GRTD+GVHA Sbjct: 13 MHTIKLVLEYDGTNYAGWQIQPNGISVQQVVEEALARLLKEPVRVHSSGRTDAGVHARGM 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + LNA L I+++ F+ RF A + Y Y I + Sbjct: 73 VAAFTTAKGLPMRAFSDGLNALL--PPDIAVMEALEAPDGFNPRFDAAGKHYRYTIHRGE 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + W ++LD M A H+VG HDF +FR+ C A + +R ID D+ Sbjct: 131 RRSPLCRHYVWHARETLDLAAMEKGASHMVGEHDFASFRTAGCAARTTVRRIDAVDLALE 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ I V FL +R VG+L VG G+ ++ D+ + + GP APP+GL Sbjct: 191 GDLLHIDVKGSGFLRNMVRIMVGTLVEVGRGRRSADDVALLFRYPGERFAGPTAPPQGLC 250 Query: 241 FDSVEY 246 V Y Sbjct: 251 LMEVYY 256 >gi|157826343|ref|YP_001494063.1| tRNA pseudouridine synthase A [Rickettsia akari str. Hartford] gi|166228757|sp|A8GQ80|TRUA_RICAH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157800301|gb|ABV75555.1| tRNA pseudouridine synthase A [Rickettsia akari str. Hartford] Length = 245 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 109/246 (44%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + + +IV FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAIN-YFARPYAVVVWHCAIVLNDFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVLAMQKAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIVKG 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK G AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEHIKDVLEAKDRKAAGLTAPAYGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKTEY 245 >gi|229159315|ref|ZP_04287339.1| tRNA pseudouridine synthase A [Bacillus cereus R309803] gi|228624207|gb|EEK81009.1| tRNA pseudouridine synthase A [Bacillus cereus R309803] Length = 252 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QGDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|331000940|ref|ZP_08324577.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT 11859] gi|329569899|gb|EGG51656.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT 11859] Length = 259 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G ++Q +E A+ TGE V AGRTD+ VHA QV Sbjct: 1 MRVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D + + + LN+YL ++ +V +FHARFSA R+Y Y I+ Sbjct: 61 IHLDTGADRKEISWVRGLNSYL--PTECAVRWAKVVPDEFHARFSACSRTYEYWIVNEPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + + L+ +NM A Q LVG HDF++FR+ CQ+ +P++ I++ V G Sbjct: 119 RSPILSGRTGWVFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVKNIEYLHVIRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+IRV A +FL+ +R+ VG L VG G + + + L+A+ R+ P P GLY Sbjct: 179 RFIKIRVKADAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 TGVGYP 244 >gi|157371571|ref|YP_001479560.1| tRNA pseudouridine synthase A [Serratia proteamaculans 568] gi|157323335|gb|ABV42432.1| tRNA pseudouridine synthase A [Serratia proteamaculans 568] Length = 273 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ +S+Q +E+A+ V + V AGRTD+GVHA QV Sbjct: 13 KIALGIEYDGSQYYGWQRQQEVASVQACLEQALSKVADAPINVLCAGRTDAGVHATGQVV 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +N +L I++ ++ V++ FHARFSA R Y Y I + Sbjct: 73 HFETTAQRKDAAWTMGVNTHL--PPDIAVRWVTGVNEDFHARFSATARRYRYIIYNHRYR 130 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V +G Sbjct: 131 PAVLQKGMTHFYHPLDAERMERAAQALLGENDFTSFRTVQCQSRTPWRNVKHVKVTRYGE 190 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + + L +DR A +GLY Sbjct: 191 YIVVDIKANAFVHHMVRNIVGSLMEIGCGNQDENWMAELLALKDRNLAAATARADGLYLV 250 Query: 243 SVEYS 247 SV+Y Sbjct: 251 SVDYP 255 >gi|317497062|ref|ZP_07955389.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316895607|gb|EFV17762.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+GY GWQ Q N +++G + K I +TGE + V GA RTDSGVHAL Sbjct: 1 MKRVKLIVAYDGTGYCGWQVQPNEITVEGVLNKHISELTGEDIKVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + KALNA L + I I + V +H RF R++Y Y + Sbjct: 61 VAVFDTESRIPGEKMAKALNARL--PEDIIIQDSKEVPLDYHPRFQDTRKTYEYTFYNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E M+ AA + +G H F + S Q +S +R I DV Sbjct: 119 YDNPVTSRHHHFVYVPLDVEKMKEAASYFLGEHCFISMCSSKAQVTSYVREIYECDVTQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L VG GK +++ L +++R GP P +GL Sbjct: 179 GRYITMRVTGSGFLYNMVRLMAGTLLEVGRGKQEPQWVKEILASKERVTPGPKLPAKGLT 238 Query: 241 FDSVEYS 247 +EY Sbjct: 239 LIQIEYP 245 >gi|184155960|ref|YP_001844300.1| tRNA pseudouridine synthase A [Lactobacillus fermentum IFO 3956] gi|238692990|sp|B2GDT8|TRUA_LACF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|183227304|dbj|BAG27820.1| pseudouridylate synthase A [Lactobacillus fermentum IFO 3956] Length = 258 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---VHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q +E+A+ + + V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQIQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSL--PLDVLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID V Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 ASGLYLVEVTYD 250 >gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str. JGS1721] gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str. JGS1721] Length = 248 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I I + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRITEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|229083731|ref|ZP_04216052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44] gi|228699589|gb|EEL52253.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44] Length = 268 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y I+Y+G+ Y GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKFTIQYDGARYKGWQRLGNNDNTIQGKIESVLSEMVGQEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ V ++FHAR+++ ++YLY+I Sbjct: 84 QVANFKIEEKLSEPKVKKYLNQYL--PNDISITDVEQVPERFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AAQ+L+G HDFT F + + S +R + DV Sbjct: 142 EHTNPFMRKYSMHVQKKLNIESMQKAAQYLIGSHDFTAFSNAKSKKKSMVREVYMLDVAE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 202 SEGFIQIRVSGNGFLHNMVRKIVGALVEVGLGQLDADAIPQILEAKQRNQINCLADASGL 261 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 262 YLEKVDF 268 >gi|228937445|ref|ZP_04100091.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970331|ref|ZP_04130990.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976901|ref|ZP_04137313.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407] gi|228782871|gb|EEM31037.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407] gi|228789440|gb|EEM37360.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822278|gb|EEM68260.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937937|gb|AEA13833.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 252 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ + +R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEIKKIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|319779623|ref|YP_004130536.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9] gi|317109647|gb|ADU92393.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9] Length = 268 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 142/245 (57%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G + GWQ Q NG ++Q +E A+ T V AGRTD+GVHAL QV Sbjct: 4 RVALGISYDGRDFQGWQTQPNGLTVQDKLEAALREFTRHQVSTICAGRTDTGVHALGQVV 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + + +N++L D+I + IV F ARFSA+ R+Y+Y + + Sbjct: 64 HFDTEVDRNLESWIRGVNSHL--PDSIRVRWSKIVPDSFSARFSAVSRTYVYLLRNERVM 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + GRA +LD E+M IA + ++G HDFT+FRS CQASSP+RT+D F +N+ G Sbjct: 122 SPIWSGRAGWDFHNLDVESMNIAKEKMIGTHDFTSFRSSQCQASSPVRTLDLFKINAEGP 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + A FLH +R+ +G++ VG G+++ + + ++A++R P P+GLYF Sbjct: 182 FIIFTLRANGFLHHMVRNLIGTILYVGMGRFSPSKIPDLIEAKNRMFTAPTFMPDGLYFA 241 Query: 243 SVEYS 247 V+Y Sbjct: 242 RVDYP 246 >gi|229194532|ref|ZP_04321335.1| tRNA pseudouridine synthase A [Bacillus cereus m1293] gi|228588998|gb|EEK47013.1| tRNA pseudouridine synthase A [Bacillus cereus m1293] gi|324324133|gb|ADY19393.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 252 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ +R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|134298133|ref|YP_001111629.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1] gi|172044244|sp|A4J151|TRUA_DESRM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134050833|gb|ABO48804.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1] Length = 247 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + + Y+G+ Y G+Q Q+ ++IQ ++EKA+ + + V GAGRTD+GVHA Sbjct: 1 MKNIKLTLAYDGTNYHGFQEQRGTGLATIQEALEKALSTIAQTPIQVIGAGRTDAGVHAQ 60 Query: 59 RQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + VP ALN L I ++ V FHARFSA+ ++Y Y I Sbjct: 61 GQVVNFRSEKWPVPAEKAPLALNVLL--PGDIKVVKAEEVPMDFHARFSAVAKTYRYSIY 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + + + P+ LD M+ A +L+G +DF +F++ IRTI D+ Sbjct: 119 HHRVMSPFHRYYCYHEPRRLDVNAMQEGAAYLLGTYDFKSFQAQGTPVKDTIRTIYRADI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +I + + FL+ +R G+L +G GK D+ K +++++R G APP+ Sbjct: 179 IEDAPVINLYLRGNGFLYNMVRIITGTLLNIGFGKIKPEDMVKIIESKNRTLAGTTAPPQ 238 Query: 238 GLYFDSVEY 246 GL VEY Sbjct: 239 GLCLMEVEY 247 >gi|87308089|ref|ZP_01090231.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645] gi|87289171|gb|EAQ81063.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645] Length = 260 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 131/246 (53%), Gaps = 6/246 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +I+ Y+G+ Y GWQ Q + +IQG++E+ + +TGE + V G+GRTDSGVHA+ QV F Sbjct: 11 LIVSYDGTNYAGWQIQNDQRTIQGALERTLLKITGEKIRVTGSGRTDSGVHAIGQVVSFR 70 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + P ++ +ALNA L I + + +F+A AI++ Y Y + + Sbjct: 71 MQSQLSPDVMRRALNAEL--PPDIVVQSARNAIPEFNAIDCAIKKRYRYLLQEGRIDDVF 128 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----FG 181 + AW + K L+ M+ AAQHL+G HDF +F S+ + + +R + V Sbjct: 129 SRQYAWFVKKELNFAAMQAAAQHLIGEHDFASFESVGSERMTTVRHVFDVQVLRSERHEF 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V A FL+ +R VG+L VG G+ + + L A+ R G AP GLY Sbjct: 189 DKVAIEVEANGFLYNMVRIIVGTLVDVGKGRRPPEWVAEVLAAKKRTAGGMTAPAHGLYL 248 Query: 242 DSVEYS 247 V+Y Sbjct: 249 LRVDYP 254 >gi|317055617|ref|YP_004104084.1| tRNA pseudouridine synthase A [Ruminococcus albus 7] gi|315447886|gb|ADU21450.1| tRNA pseudouridine synthase A [Ruminococcus albus 7] Length = 245 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 2/242 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y+GS Y GWQRQ N ++Q +E AIF +TGE VVV G RTD+GVHA V F Sbjct: 1 MTLAYDGSNYHGWQRQSNALAVQEVVEDAIFKLTGENVVVQGCSRTDAGVHAREYVLSFG 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L + LN++L D IS++ D+ FHAR+ + Y Y + + Sbjct: 61 LELPINCRGIQLGLNSWL--PDDISVIGCEEADEGFHARYMCKGKEYEYIVHNSRIKDPF 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A+ +D + AA++ VG HDF F S C +R I FDV G+ + Sbjct: 119 MRNTAFRNTYPIDEVLLDRAAKYFVGEHDFKAFCSTACDKEITVRKIYRFDVRREGDKVI 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 V FL+ +R VG+L + +GK + + + L ++DRK+ G PP+GLY + V Sbjct: 179 FTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRILDSKDRKKAGKTVPPQGLYLNKVY 238 Query: 246 YS 247 Y Sbjct: 239 YD 240 >gi|152980861|ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] gi|189029996|sp|A6T009|TRUA_JANMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151280938|gb|ABR89348.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] Length = 271 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 95/251 (37%), Positives = 139/251 (55%), Gaps = 8/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y+G+ + GWQ Q NG ++Q +E A+ T + V AGRTD+GVH L QV Sbjct: 7 RIVLGVQYDGTPWQGWQTQLNGLTVQDRLEFALSKFTLQTVSTVCAGRTDAGVHGLEQVV 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVD------KQFHARFSAIRRSYLYRI 116 HFD E + +N +L +I++ + V FHARFSA R Y Y + Sbjct: 67 HFDTTLERDMSSWVRGVNTFL--PPSIAVRWATEVAHNPDEQDNFHARFSARSRMYQYVL 124 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G+A + + LD E MR AAQHL+G HDF+TFRS+ CQA SP++++ Sbjct: 125 YNNPVRSPLLEGKAGWVFRKLDVERMRTAAQHLLGEHDFSTFRSVQCQAKSPVKSMYSIK 184 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+LI + A +FLH +R+ VGSL VG+G L++ L +DRK P P Sbjct: 185 IEQRGDLIMFTLHANAFLHHMVRNIVGSLIYVGNGAQQPDWLKELLDGRDRKFAAPTFMP 244 Query: 237 EGLYFDSVEYS 247 +GLY ++Y Sbjct: 245 DGLYLAKIDYD 255 >gi|332284539|ref|YP_004416450.1| tRNA pseudouridine synthase A [Pusillimonas sp. T7-7] gi|330428492|gb|AEC19826.1| tRNA pseudouridine synthase A [Pusillimonas sp. T7-7] Length = 267 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 91/243 (37%), Positives = 130/243 (53%), Gaps = 2/243 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + + Y+GS + GWQ Q G ++Q ++E A+ V AGRTD+GVHAL Q+ H Sbjct: 2 ALGLAYDGSSWQGWQTQPGGLTVQDTLESALAEFLNHPVGTICAGRTDTGVHALEQIVHL 61 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + LNA L +I++ V FHARFSA+ RSY+Y + + Sbjct: 62 DTQAARRPESWVRGLNALL--PASIAVQWAKPVSDSFHARFSALSRSYVYIVRNTRVRSP 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L GR + SL + MR AA+ LVG HDF++FRS CQA+SP+RT+ V G+ Sbjct: 120 LMHGRVGWVYHSLQLDPMRDAARRLVGEHDFSSFRSSQCQAASPVRTLQEASVEQHGDFY 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R A +FLH IR+ +G++ +G GK +++ L +DR+ P P GLY V Sbjct: 180 LFRFQANAFLHHMIRNLMGAILYIGQGKQEPGWIDELLAQRDRRRAAPTFSPAGLYLSGV 239 Query: 245 EYS 247 Y Sbjct: 240 RYP 242 >gi|163857158|ref|YP_001631456.1| tRNA pseudouridine synthase A [Bordetella petrii DSM 12804] gi|229557953|sp|A9IRL0|TRUA_BORPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163260886|emb|CAP43188.1| pseudouridylate synthase I [Bordetella petrii] Length = 268 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q + ++Q ++E A+ G + AGRTD+GVHA Sbjct: 1 MPRMALGLAYDGSSWQGWQTQPHRQTVQDTLEAALARFAGIDGSLPTVCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D E + +NA+L +I++ V FHARFSA R+YLY + Sbjct: 61 MQVVHLDTRLERRAESWVRGVNAFL--PPSIAVQWAQPVPDDFHARFSARSRTYLYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L GRA + LD + MR AA L+G HDF++FRS CQA P+RT+ D++ Sbjct: 119 GRVRPPLWAGRAGWCFQPLDVQAMRQAASALLGEHDFSSFRSSQCQARHPVRTLHRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L +G G+ + L A+DR+ P +G Sbjct: 179 ERGPFLVFTLRANAFLHHMVRNLMGALLQIGQGRQPVAWMPAVLAARDRRLAAPTFAADG 238 Query: 239 LYFDSVEYS 247 LY ++EY Sbjct: 239 LYLSAIEYP 247 >gi|254517504|ref|ZP_05129560.1| tRNA-pseudouridine synthase I [Clostridium sp. 7_2_43FAA] gi|226911253|gb|EEH96454.1| tRNA-pseudouridine synthase I [Clostridium sp. 7_2_43FAA] Length = 244 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +EY+G+ Y GWQ+QK G++IQ ++E+AI L+T E V G+ RTD+GVHA Sbjct: 1 MRNIKLTLEYDGTNYLGWQKQKIGATIQETLEEAIRLLTNEESEVIGSSRTDAGVHARGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +A+N L + I IL V++ FH+R+SA ++Y Y I+ R Sbjct: 61 VANFKTNSTIPSEKFREAINYRL--PNDIVILKSEEVEEDFHSRYSAKGKTYSYSILNRD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ K + + + LD E+M+ A ++ +G DF F+S + +RTI ++ Sbjct: 119 VNSAIGKDYVYHVKRKLDVEDMKEACKYFIGTKDFMAFKSSGSSVKTTVRTISDLYIDIK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I+I V FL+ +R VG+L +VG K S +++ ++++DRK+ G P GL Sbjct: 179 DDIIKIYVTGDGFLYNMVRIIVGTLIMVGSNKIDSREVKNIIESKDRKKAGICVPAAGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVYY 244 >gi|189423417|ref|YP_001950594.1| tRNA pseudouridine synthase A [Geobacter lovleyi SZ] gi|189419676|gb|ACD94074.1| tRNA pseudouridine synthase A [Geobacter lovleyi SZ] Length = 262 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 121/247 (48%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +II+Y+G+ Y GWQ Q NG SIQ ++E A+ + G+ V V +GRTD+GVHA+ Sbjct: 17 MRTIKLIIQYDGTNYCGWQEQTNGPSIQETVELALAKILGQRVRVQSSGRTDAGVHAVAM 76 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A F +N +L D I+I + V F A A ++Y Y I Sbjct: 77 PAVFRTESTIPLKAFVDGVNCHL--PDDIAIQSAVEVPTGFRAIGGARSKTYRYTIYNAP 134 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + + LD + M+ AA + VG HDF FR +C A + R ID +N Sbjct: 135 VRSPLNRRTSWHVREQLDLQAMQQAAAYFVGEHDFAAFRGANCSAVTSRRRIDAVQINQS 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI I V FL +R G+L VG G++ + L DR+ G APP+GL Sbjct: 195 GPLITIDVTGGGFLKYMVRIMAGTLVDVGRGRFAPEHVAGLLAEPDRQRGGVTAPPQGLS 254 Query: 241 FDSVEYS 247 V Y Sbjct: 255 LLQVIYP 261 >gi|229083462|ref|ZP_04215810.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44] gi|228699895|gb|EEL52532.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44] Length = 252 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGENVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLTLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A +L+G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYLIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + + L Q+RK G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLDVGQGKLDADSIPEILAKQNRKFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|167767771|ref|ZP_02439824.1| hypothetical protein CLOSS21_02306 [Clostridium sp. SS2/1] gi|167710510|gb|EDS21089.1| hypothetical protein CLOSS21_02306 [Clostridium sp. SS2/1] gi|291558888|emb|CBL37688.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2] Length = 252 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 125/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+GY GWQ Q N +++G + K I +TGE + V GA RTDSGVHAL Sbjct: 1 MKRVKLIVAYDGTGYCGWQVQPNEITVEGVLNKHISELTGEDIKVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + KALNA L + I I + V +H RF R++Y Y + Sbjct: 61 VAVFDTESRIPGEKMAKALNARL--PEDIIIQDSKEVPLDYHPRFQDTRKTYEYTFYNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E M+ AA + +G H F + S Q +S +R I DV Sbjct: 119 YDNPVTSRHHHFVYVPLDVEKMKEAASYFLGEHCFISMCSSKAQVTSYVREIYECDVTQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I++RV FL+ +R G+L VG GK +++ L +++R GP P +GL Sbjct: 179 GRYIKMRVTGSGFLYNMVRLMAGTLLEVGRGKQEPQWVKEILASKERVTPGPKLPAKGLT 238 Query: 241 FDSVEYS 247 +EY Sbjct: 239 LIQIEYP 245 >gi|110834324|ref|YP_693183.1| tRNA pseudouridine synthase A [Alcanivorax borkumensis SK2] gi|123149458|sp|Q0VPI7|TRUA_ALCBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110647435|emb|CAL16911.1| Pseudouridylate synthase [Alcanivorax borkumensis SK2] Length = 267 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 126/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY+G+ + GWQ +Q ++Q +E A+ V V V AGRTD+GVH Sbjct: 1 MTRIALGIEYDGTDFRGWQMQQSGVRTVQECLEAALSKVANHSVTVVCAGRTDAGVHGTG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD N L ++I V FHARFSA+ R Y Y I Sbjct: 61 QVVHFDSDAPREMKSWIMGGNTNL--PRDVTIRWAVPVSDDFHARFSAVSRRYRYVIYNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P AL + + + LD MR AA +LVG HDFT +RS+HCQA SP++T+ ++ Sbjct: 119 ARPPALYRSQVTWNHRPLDVAAMREAASYLVGHHDFTAYRSVHCQAKSPLKTLHSLELYE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + A +FL +R+ G L VG GK + L+ +DR+ APP GL Sbjct: 179 QGKVLVLEAHANAFLMHMVRNIAGVLMKVGAGKKPPVWAKDVLECRDRRLGAATAPPFGL 238 Query: 240 YFDSVEYS 247 Y +EY Sbjct: 239 YLVEIEYP 246 >gi|206978041|ref|ZP_03238926.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217957717|ref|YP_002336261.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|229136988|ref|ZP_04265615.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26] gi|206743754|gb|EDZ55176.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217063029|gb|ACJ77279.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|228646526|gb|EEL02733.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26] Length = 252 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE++ V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELIRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ +R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|126462985|ref|YP_001044099.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029] gi|166228755|sp|A3PLW1|TRUA_RHOS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126104649|gb|ABN77327.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029] Length = 255 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 123/251 (49%), Positives = 164/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVREW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVREWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SP++T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDPEAMRAGAAHLVGRHDFTTFRAAGCQAASPVKTLDALTLETV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL+A DR CGP+ PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALEAHDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|227515518|ref|ZP_03945567.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931] gi|227086131|gb|EEI21443.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931] Length = 258 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---VHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q +E+A+ + + V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQVQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSL--PLDVLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID V Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 ASGLYLVEVTYD 250 >gi|227550954|ref|ZP_03981003.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257893717|ref|ZP_05673370.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257896582|ref|ZP_05676235.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|293379717|ref|ZP_06625853.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] gi|227179913|gb|EEI60885.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257830096|gb|EEV56703.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257833147|gb|EEV59568.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|292641715|gb|EFF59889.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] Length = 247 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNTEIELSEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|261346179|ref|ZP_05973823.1| tRNA pseudouridine synthase A [Providencia rustigianii DSM 4541] gi|282565835|gb|EFB71370.1| tRNA pseudouridine synthase A [Providencia rustigianii DSM 4541] Length = 271 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS Y+GWQRQ+ S+QG +E+A+ + E + V+ AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYYGWQRQQEVKSVQGCLEEALSKIAAEPISVNCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ N +L I++ VD++FHARFSA R Y Y I + Sbjct: 69 HFETTAIRKEAAWTMGANTHL--PPDIAVRWCKPVDEEFHARFSATARRYRYVIFNHRYR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V GN Sbjct: 127 PAILSNGVTHFHYPLDEKRMHQAAQALLGENDFTSFRAVQCQSRTPWRNVMHVNVTRHGN 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L+ +DR + A EGLY Sbjct: 187 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMHQLLELKDRTKAAATAKAEGLYLV 246 Query: 243 SVEYS 247 SV+Y Sbjct: 247 SVDYP 251 >gi|294085062|ref|YP_003551822.1| Pseudouridylate synthase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664637|gb|ADE39738.1| Pseudouridylate synthase [Candidatus Puniceispirillum marinum IMCC1322] Length = 254 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 122/246 (49%), Positives = 155/246 (63%), Gaps = 1/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY+G+ + GWQRQ NG ++Q +E+A F TGE + V GAGRTDSGVHAL QV Sbjct: 3 RRIFITIEYDGAPFVGWQRQDNGITVQQELEEAAFAFTGEKINVQGAGRTDSGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH D+ ++ P + +ALNA+L IS+L+ V HARFSAI R YLYRI+ R+ Sbjct: 63 AHLDVPEKFAPNRVMEALNAHLS-HTAISVLDAYEVPDDAHARFSAIGRRYLYRILPRRQ 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P AL+ GR W + LD + M+ A L+GRHDF +FR+ CQA S IRT+D V Sbjct: 122 PPALDAGRVWHHKQPLDADAMQAGADMLIGRHDFNSFRAAQCQAESSIRTLDILQVEQVS 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + V ARSFLH Q+R+ G+L LVG GKW D++ AL A DR GP APP GLY Sbjct: 182 AEIHLHVEARSFLHHQVRNIAGTLALVGTGKWQPDDVKAALAAADRSAAGPTAPPHGLYL 241 Query: 242 DSVEYS 247 V Y Sbjct: 242 TDVFYP 247 >gi|163738320|ref|ZP_02145735.1| Pseudouridylate synthase [Phaeobacter gallaeciensis BS107] gi|161388241|gb|EDQ12595.1| Pseudouridylate synthase [Phaeobacter gallaeciensis BS107] Length = 257 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 115/251 (45%), Positives = 165/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIEDALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+V++W P L +ALN +LK ++I++ + + +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMVKDWDPFRLSEALNFHLK-PAPVAIVDCARAEDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G+ W + LD +M+ AA HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGQVWQLNHDLDAGSMQEAANHLIGQHDFTTFRSSICQAASPLKTLDELRIERV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLARVGYP 250 >gi|319942390|ref|ZP_08016704.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B] gi|319804078|gb|EFW00986.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B] Length = 269 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IEY G+ + GWQ Q + S+Q ++E A+ + V AGRTD+GVHA QV Sbjct: 11 LALGIEYRGTAFNGWQVQPDHPSVQAALEAALSQFADHPISVICAGRTDTGVHATHQVVS 70 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F V + +NA L +++++ + VD++FHARFSA R+Y Y I Sbjct: 71 FTSVARRPSAGWIRGVNAIL--PESVAVRWMREVDEKFHARFSARSRTYEYWIWNDPVRS 128 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L +G A + + LD M+ A L+G HDFT+FR+ CQA +P+RTI + G L Sbjct: 129 PLFEGSAGWVFRPLDEALMQRGATALIGEHDFTSFRASECQAKTPVRTISELKIVRRGAL 188 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +R+ A +FL +R+ VG+L VG G+ + + L A+ R P P GLY Sbjct: 189 VGVRITANAFLQHMVRNIVGALIYVGTGRERPEWIAEVLAAKSRDAAAPTFSPAGLYLTG 248 Query: 244 VEYS 247 V Y Sbjct: 249 VGYP 252 >gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str. F4969] gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str. F4969] Length = 248 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVNVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|119945656|ref|YP_943336.1| tRNA pseudouridine synthase A [Psychromonas ingrahamii 37] gi|166228751|sp|A1SW72|TRUA_PSYIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119864260|gb|ABM03737.1| tRNA pseudouridine synthase A [Psychromonas ingrahamii 37] Length = 261 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQK S+Q +E+++ + V VH AGRTDSGVH+ QV Sbjct: 1 MRIALGIEYDGAAYYGWQRQKEVISVQQELEQSLSKIANHTVRVHCAGRTDSGVHSTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +NA L I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETEAIRKDVAWTLGVNANL--PKDIAVRWVKQVDSSFHARFSATARHYRYIIYNGAF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M +A Q L+G DFT+FR++HCQASSP++ I++ +++ Sbjct: 119 RPGILGTGLSHYHMDLDVQKMHLAGQMLLGEQDFTSFRALHCQASSPVKCIEYLNISQRS 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A +FLH +R+ GSL +G GK L+ L +DR + A P GLY Sbjct: 179 QFIIIDIKANAFLHHMVRNIAGSLIEIGCGKQPVDWLKTLLAYKDRSKAAATAKPGGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|15598310|ref|NP_251804.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO1] gi|107102663|ref|ZP_01366581.1| hypothetical protein PaerPA_01003728 [Pseudomonas aeruginosa PACS2] gi|218890685|ref|YP_002439549.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa LESB58] gi|254236084|ref|ZP_04929407.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719] gi|254241809|ref|ZP_04935131.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192] gi|296388384|ref|ZP_06877859.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAb1] gi|313108437|ref|ZP_07794441.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016] gi|8134770|sp|O87016|TRUA_PSEAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9949225|gb|AAG06502.1|AE004735_9 tRNA-pseudouridine synthase I [Pseudomonas aeruginosa PAO1] gi|3237313|gb|AAC23941.1| HisT [Pseudomonas aeruginosa PAO1] gi|126168015|gb|EAZ53526.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719] gi|126195187|gb|EAZ59250.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192] gi|218770908|emb|CAW26673.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa LESB58] gi|310880943|gb|EFQ39537.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016] Length = 285 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PADISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + G Sbjct: 137 RPAHLAEEVTWNHRPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLLEHG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P GLY Sbjct: 197 RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYL 256 Query: 242 DSVEYS 247 VEY Sbjct: 257 VRVEYP 262 >gi|56460125|ref|YP_155406.1| tRNA pseudouridine synthase A [Idiomarina loihiensis L2TR] gi|62901213|sp|Q5QUE5|TRUA_IDILO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56179135|gb|AAV81857.1| Pseudouridylate synthase (tRNA psi55) [Idiomarina loihiensis L2TR] Length = 261 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS Y+GWQRQ+ +S+Q +E+A+ + V V AGRTD+GVHA Q+ Sbjct: 1 MRMALCLEYDGSRYYGWQRQREVASVQQCVEEALSKIANAPVEVTCAGRTDAGVHATAQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ V +N+ L I++ VD +F ARFSA R Y Y I + Sbjct: 61 VHFDVPVPRADVAWTLGVNSNL--PAGIAVRWAREVDSEFSARFSATSRRYRYIIANTRF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M+ AAQ LVG HDFT FR+ HCQ+ +P R + V G Sbjct: 119 RPGIHSAGVSHYHQPLDAEVMQEAAQALVGEHDFTAFRASHCQSHTPFRKVSDLTVERRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ VGSL +VG + + L+ +DR + A P GLY Sbjct: 179 DYIIVDISANAFLHHMVRNIVGSLIVVGQHLQPPDWIGELLRQKDRTKAAATAKPGGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 VAVTYP 244 >gi|88812707|ref|ZP_01127954.1| Pseudouridylate synthase [Nitrococcus mobilis Nb-231] gi|88790123|gb|EAR21243.1| Pseudouridylate synthase [Nitrococcus mobilis Nb-231] Length = 284 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS + GWQRQ + S+Q ++E+A+ V V V AGRTD+GVHA QV Sbjct: 26 MRVALGIEYDGSRFSGWQRQSHRLSVQVALEEALSRVADHPVTVTCAGRTDAGVHATHQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N+ L I I + V + FHARF+A RSY Y I++R Sbjct: 86 IHFDTTAPRPSRAWVRGVNSNL--PGDIRITWVRAVPQVFHARFAATARSYRYVILSRAV 143 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P AL + R + L MR+AAQ+L+G HDF+++R++ CQA P+RT+ D+ G Sbjct: 144 PPALHRRRVAWTYRPLQLSAMRVAAQYLLGEHDFSSYRALACQARHPVRTVHRLDITRCG 203 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V A +FLH +R+ G L +G G + LQA+DR G AP GLY Sbjct: 204 DYFYVDVTANAFLHHMVRNIAGVLLSIGSGARPPQWSWEILQARDRTAGGVTAPAGGLYL 263 Query: 242 DSVEYS 247 +V Y Sbjct: 264 VAVRYP 269 >gi|222093912|ref|YP_002527962.1| tRNA pseudouridine synthase a [Bacillus cereus Q1] gi|221237960|gb|ACM10670.1| tRNA pseudouridine synthase A [Bacillus cereus Q1] Length = 247 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ +R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 179 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|160935852|ref|ZP_02083227.1| hypothetical protein CLOBOL_00746 [Clostridium bolteae ATCC BAA-613] gi|158441596|gb|EDP19306.1| hypothetical protein CLOBOL_00746 [Clostridium bolteae ATCC BAA-613] Length = 248 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + + Y+G+ Y GWQ+Q N +IQG +E + + G V VHG+GRTD+GVHA Q Sbjct: 1 MNIGVWLSYDGTRYDGWQKQGNTDRTIQGKLEAVLEKLEGSPVEVHGSGRTDAGVHAESQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F L + P + + +N YL + I++ ++ ++FH+R +A+R++Y Y+I T Sbjct: 61 VANFHLAKNMTPDEIMRYMNRYL--PEDIAVTRACVMPERFHSRLNALRKTYRYQIETAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + + + LD M AA L G HD+ +F S IRTI+ Sbjct: 119 KKNVFERYYYYGLGQDLDVGKMEQAAAILTGTHDYKSFCGNKKMKKSTIRTIESICFYRM 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I FL +R G+L VG GK ++ L+A DR G APPEGL+ Sbjct: 179 GSRIHISFTGNGFLQQMVRILSGTLIEVGTGKRKPEEMAAILEAGDRSMAGFTAPPEGLF 238 Query: 241 FDSVEY 246 + VEY Sbjct: 239 LEKVEY 244 >gi|126737019|ref|ZP_01752754.1| tRNA pseudouridine synthase A [Roseobacter sp. SK209-2-6] gi|126721604|gb|EBA18307.1| tRNA pseudouridine synthase A [Roseobacter sp. SK209-2-6] Length = 255 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 119/251 (47%), Positives = 161/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDLPSVQGAIEDALSRLEPGAHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK ++IL+ + VD+ +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLQKDWDPFRLSEALNYHLK-PAPVAILDCAGVDEDWHARFSAIERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G+ W I LD M+ AA HL+G HDFTTFRS CQA+SP +T+D + + Sbjct: 120 APATHDAGQVWQINHELDVAAMQEAADHLIGNHDFTTFRSSICQAASPQKTLDELRIETV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGSWEPLDVKHALEACDRSACGPVCPG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLARVGYP 250 >gi|260662783|ref|ZP_05863677.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN] gi|260552864|gb|EEX25863.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN] Length = 258 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 129/252 (51%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---VHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q ++E+A+ + + V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQVQPGERTVQQALERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSL--PLDVLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID V Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 ASGLYLVEVTYD 250 >gi|322374222|ref|ZP_08048755.1| tRNA pseudouridine synthase A [Streptococcus sp. C150] gi|321276927|gb|EFX53999.1| tRNA pseudouridine synthase A [Streptococcus sp. C150] Length = 248 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+QRQ + SIQ IEK + + +G VVVHGAGRTD+GVHA Sbjct: 1 MVRYKAIISYDGTLFSGFQRQPDARSIQEEIEKTLLRLNSGTPVVVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V + FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEDFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L M+ AA+ LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKVRTITQARVSI 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPISQVKTVLESCDRNLAGPTASGN 238 Query: 238 GLYFDSVEYS 247 GLY ++Y Sbjct: 239 GLYLKEIKYE 248 >gi|42779223|ref|NP_976470.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] gi|51316699|sp|Q73F64|TRUA1_BACC1 RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|42735138|gb|AAS39078.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] Length = 247 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWNNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ +R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 179 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|212712250|ref|ZP_03320378.1| hypothetical protein PROVALCAL_03336 [Providencia alcalifaciens DSM 30120] gi|212684996|gb|EEB44524.1| hypothetical protein PROVALCAL_03336 [Providencia alcalifaciens DSM 30120] Length = 271 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS Y+GWQRQ+ S+QG +E A+ + E + V+ AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYYGWQRQQEVQSVQGCLEAALSKIAAEPISVNCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ N +L D I++ VD +FHARFSA R Y Y I + Sbjct: 69 HFETSAIRKEAAWTMGTNTHL--PDDIAVRWCKPVDDEFHARFSATARRYRYVIFNHRYR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G DFT+FR++ CQ+ +P R + H +V GN Sbjct: 127 PAILSNGVTHFHFPLDEKRMHQAAQALLGERDFTSFRAVQCQSKTPWRNVMHVNVTRHGN 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + L+ +DR + A EGLY Sbjct: 187 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMAHLLELKDRTKAAATAKAEGLYLV 246 Query: 243 SVEYS 247 SV+Y Sbjct: 247 SVDYP 251 >gi|157804248|ref|YP_001492797.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. McKiel] gi|166228759|sp|A8F079|TRUA_RICCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157785511|gb|ABV74012.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. McKiel] Length = 245 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 105/246 (42%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE VV+ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGIMSVQQILEEAIYKFSGEQVVLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + + A+N Y ++ + N + FHARFSA+ R Y+YRI+ R Sbjct: 61 VAHFDLSKNLETHKIITAIN-YFARPYSVIVWNCEMAPNNFHARFSAVSRHYIYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + R W I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YSSVINRDRVWWISSPLDVLAMQKAATYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + +++ L+ +DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEYIKELLEVKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVRTEY 245 >gi|257900124|ref|ZP_05679777.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] gi|257838036|gb|EEV63110.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] Length = 247 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNSEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|228989617|ref|ZP_04149601.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442] gi|228770154|gb|EEM18734.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQR N ++IQG IE + +TG + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGGRYKGWQRLGNNDNTIQGKIESVLSEMTGREIEIIGCSRTDAGVHALH 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ ++ ++FHAR+++ ++YLY+I Sbjct: 61 QVANFKIDENLPELKVKKYLNQYL--PNDISITDVELISERFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ENM+ AAQ+L+G HDFT F + + S +R I DV Sbjct: 119 EHTNPFMRKYSMHVGKKLNIENMQKAAQYLIGSHDFTAFSNAKSKKKSMVREIYMLDVVE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 SEGFIQIRVNGNGFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQINCLADASGL 238 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 239 YLEKVDF 245 >gi|226327923|ref|ZP_03803441.1| hypothetical protein PROPEN_01804 [Proteus penneri ATCC 35198] gi|225203627|gb|EEG85981.1| hypothetical protein PROPEN_01804 [Proteus penneri ATCC 35198] Length = 294 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + +EY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 27 KIALGVEYDGSRYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQVV 86 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N +L I++ + V FHARFSA R Y Y I + Sbjct: 87 HFETTAHRKDPAWTMGVNTHL--PADIAVRWVKTVADDFHARFSATARRYRYVIFNHRYR 144 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G+ Sbjct: 145 PAILSSGVTHFHYPLDAERMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVSRYGD 204 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 205 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDITWMAELLALKDRTKAAATAKANGLYLV 264 Query: 243 SVEYS 247 SV+Y Sbjct: 265 SVDYP 269 >gi|86139183|ref|ZP_01057753.1| tRNA pseudouridine synthase A [Roseobacter sp. MED193] gi|85824027|gb|EAQ44232.1| tRNA pseudouridine synthase A [Roseobacter sp. MED193] Length = 258 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 118/251 (47%), Positives = 160/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE+A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEEALAKLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W P L +ALN +LK ++I++ ++VD ++HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLQKPWSPFRLSEALNFHLK-PAPVAIVDCAVVDPEWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G+ W I LD E M+ A HL+G HDFTTFRS CQA SP +T+D + Sbjct: 120 APATHDAGQVWQINNDLDVERMQQGANHLLGNHDFTTFRSSICQAQSPQKTLDELRIERV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + V ARSFLH Q+RSFVG+L+ VG WT D++ AL+A DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGADAWTPQDVKSALEACDRAACGPVCPG 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLARVGYP 250 >gi|257888836|ref|ZP_05668489.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257824892|gb|EEV51822.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] Length = 246 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNTEIELSEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKARQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|90408620|ref|ZP_01216774.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3] gi|90310264|gb|EAS38395.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3] Length = 261 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQK+ S+Q +EKA+ +V V V+ AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTAYYGWQRQKDVISVQEELEKALSIVANHSVRVNCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +NA L I++ VD FHARFSA R Y Y I Sbjct: 61 IHFDTQAVRNDVAWTLGINANL--PKDIAVRWCKHVDDSFHARFSATARRYRYIIYNHVL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q +VG HDFT+FR++HCQA++P+R+I +V Sbjct: 119 RPGILNSGLSHYHHLLDADKMHQAGQFIVGTHDFTSFRALHCQANTPVRSIHSLNVTRRA 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +FLH +R+ GSL +G L L+ ++R A P GLY Sbjct: 179 DFIIIDIKANAFLHHMVRNIAGSLIEIGQDNQKVDWLMTLLEYKNRARAAATAKPGGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|56697975|ref|YP_168346.1| tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3] gi|62901184|sp|Q5LNR0|TRUA_SILPO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56679712|gb|AAV96378.1| tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3] Length = 262 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 119/251 (47%), Positives = 159/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYLGTPFAGWQRQKDLPSVQGAIETALARLEPGPHTIAAAGRTDAGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK ++I + V + +HARFSA R YL+R++ R+ Sbjct: 61 VAHCDLTRDWDPFRLSEALNYHLK-PQPVAITAAARVAEDWHARFSATERQYLFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G W + LD M+ AA L+GRHDFTTFRS CQA+SP++T+D V + Sbjct: 120 APATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRSSICQAASPVKTLDELRVEAV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I V ARSFLH Q+RSFVG+L+ VG G W D+ AL+A+DR CGP+ PP Sbjct: 180 ESFSGPEIRFHVRARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLARVGYP 250 >gi|187478755|ref|YP_786779.1| tRNA pseudouridine synthase A [Bordetella avium 197N] gi|123738625|sp|Q2KYM0|TRUA_BORA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115423341|emb|CAJ49875.1| tRNA pseudouridine synthase A [Bordetella avium 197N] Length = 267 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 137/249 (55%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q ++E A+ TG + AGRTD+GVHA Sbjct: 1 MTRIALGLSYDGSSWQGWQTQPHGQTVQDTLEAALGQFSGTGAPLDTLCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + +NA+L +ISI V + FHARFSA R+Y+Y + Sbjct: 61 MQVVHVDTHLNRRAESWVRGVNAFL--PSSISIHWAKEVGEDFHARFSARSRTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL RA + LD MR AAQ L+G HDF++FRS CQA P+R + D+ Sbjct: 119 GRVRPALWAHRAGWCFQPLDVTAMRQAAQALLGEHDFSSFRSSQCQARHPVRHLTRLDIA 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + A +FLH +R+ +G+L +G G+ + + L+A+DR+ P P+G Sbjct: 179 ERGSFLVFTLQANAFLHHMVRNIMGALLQIGQGRESVDWMASLLRARDRRLGAPTFSPDG 238 Query: 239 LYFDSVEYS 247 LY +++Y Sbjct: 239 LYLSAIDYP 247 >gi|218895277|ref|YP_002443688.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|218542262|gb|ACK94656.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] Length = 252 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R I Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTIAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|85713087|ref|ZP_01044122.1| tRNA pseudouridine synthase A [Idiomarina baltica OS145] gi|85693073|gb|EAQ31036.1| tRNA pseudouridine synthase A [Idiomarina baltica OS145] Length = 261 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G Y+GWQRQ+ S+Q +E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGRAYYGWQRQREVDSVQQRLENALSKVADQAVETVCAGRTDAGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + +N++L I++ VD F ARFSA R Y Y I Sbjct: 61 VHFDVSTQRRAAAWTLGVNSHL--PPDIAVRWAQPVDDSFSARFSATARRYRYIIANHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M+ A L+G HDF+ FR+ CQ+ S R I H +V+ G Sbjct: 119 RPGIHSHGVSHYHHPLDVDAMQAATPALLGEHDFSAFRAAQCQSHSAHREITHLNVHRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ VGSL ++G + + L + L +DR + A P GLY Sbjct: 179 DFIIVDIKANAFLHHMVRNIVGSLIVIGRHQQDPSWLGELLAGKDRTKAAATAKPGGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VEVDYP 244 >gi|293556963|ref|ZP_06675523.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] gi|294618124|ref|ZP_06697719.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|291595614|gb|EFF26912.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|291600783|gb|EFF31075.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] Length = 247 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FH+R++A+ + Y Y + Sbjct: 61 QVANFKTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|168181898|ref|ZP_02616562.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|237796908|ref|YP_002864460.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] gi|182674803|gb|EDT86764.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|229262719|gb|ACQ53752.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] Length = 246 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V G RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGVSRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYVCNFFTNTKIPPENLQKVINNNL--PADIVVLSSEEASNEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSQPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|323135724|ref|ZP_08070807.1| tRNA pseudouridine synthase A [Methylocystis sp. ATCC 49242] gi|322398815|gb|EFY01334.1| tRNA pseudouridine synthase A [Methylocystis sp. ATCC 49242] Length = 245 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 136/246 (55%), Positives = 172/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+Q +E+A+ + G V+HGAGRTD+GVHAL Q Sbjct: 1 MPRYALTIEYDGGPFVGWQRQANGVSVQQRLEEAVAAINGARAVIHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW L ALNA+LK D +++++ VD+ F ARFSAIRR Y Y I R+ Sbjct: 61 VAHVDLAREWRADRLRDALNAHLK-PDPVAVVSARAVDENFEARFSAIRRHYRYVIDNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + GRAW + + LD + M AAQ LVGRHDFTTFR+ CQA+SP+RT++ DV Sbjct: 120 APLTVGLGRAWHVKRPLDAQAMHDAAQRLVGRHDFTTFRASECQANSPVRTLERLDVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS GSL+ VG GKWT+ DL AL+A+DR CG +APP GLY Sbjct: 180 GDRIEIVTCARSFLHNQVRSMAGSLEHVGSGKWTADDLAAALEAKDRARCGQVAPPHGLY 239 Query: 241 FDSVEY 246 +V+Y Sbjct: 240 LVAVDY 245 >gi|291522074|emb|CBK80367.1| pseudouridylate synthase I [Coprococcus catus GD/7] Length = 247 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 132/249 (53%), Gaps = 5/249 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M R ++IEY+GS Y GWQR + +G +IQG +E + +TGE V + GAGRTD+GVHA Sbjct: 1 MERNIRLLIEYDGSRYDGWQRLGKGHGVTIQGKLEDVLSKMTGEQVELIGAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVA+F + LN YL I++ + V ++FH+R++A + YLYRI Sbjct: 61 YEQVANFHTNSNMKCWEMKYYLNRYL--PGDIAVNRVDDVPERFHSRYNAKAKKYLYRIA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P ++ W LD M+ AA LVG HDF F S S +R I D+ Sbjct: 119 IGDVPCVFDRKYTWYCFDKLDVTAMKKAAALLVGEHDFKAFCSNKRTNKSTVREIYDIDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++I V FL+ +R VG+L VG G+ ++ L++++R + G A + Sbjct: 179 YADTRELQITVYGNGFLYNMVRIIVGTLIEVGKGERRPEEMTAILESRERTKAGATAAAQ 238 Query: 238 GLYFDSVEY 246 GL+ VEY Sbjct: 239 GLFLQEVEY 247 >gi|260584448|ref|ZP_05852195.1| tRNA pseudouridine synthase A [Granulicatella elegans ATCC 700633] gi|260157966|gb|EEW93035.1| tRNA pseudouridine synthase A [Granulicatella elegans ATCC 700633] Length = 250 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY +I+ Y+G+ Y G+Q Q+NG+SIQ + KA+ +T G + V G+GRTDSGVHA QV Sbjct: 4 RYKVILSYDGTNYVGFQVQENGNSIQAELNKALRKMTKGLYIPVCGSGRTDSGVHANGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + L +ALN+ L D IS + V +FHAR+S + Y+YR+ ++ Sbjct: 64 IHFDYPTKIEEENLQRALNSLL--PDDISAKQVMAVSDEFHARYSVTGKRYIYRVNIQKF 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + P ++ +NM A Q ++G HDFT+F S S +R + +V Sbjct: 122 VNPFSRLYTLHHPYRVNVDNMNEALQAVIGEHDFTSFCSTKTDKESKVRIVTKAEVVEKD 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + FL+ IR VG+ +GDG +D+ L A DR++ GP APP+GLY Sbjct: 182 GELVFTFEGNGFLYNMIRILVGTSLQIGDGLRPVSDMRDILVAMDRQKAGPTAPPQGLYL 241 Query: 242 DSVEYS 247 D V Y Sbjct: 242 DEVFYE 247 >gi|300119545|ref|ZP_07057089.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|298723017|gb|EFI63915.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] Length = 252 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|316932092|ref|YP_004107074.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1] gi|315599806|gb|ADU42341.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1] Length = 245 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPKLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH ++ + + L ALNA+L+ + +++L IV + F ARFSA+RR Y YRI R+ Sbjct: 61 VAHVEIAKPFRADKLRDALNAHLR-PNPVAVLAAEIVPETFEARFSAVRRHYRYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALDIGKVWRVPKPLDSDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVIRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 180 GDAVDIVTNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARKRSACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|218781331|ref|YP_002432649.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans AK-01] gi|218762715|gb|ACL05181.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans AK-01] Length = 245 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +I+EY+G+ Y GWQRQ + +IQ +E A+ +T + VV+GAGRTDSGVHAL Sbjct: 1 MKRNFKLILEYDGTHYHGWQRQPHDLTIQEVLEGALEKITRQKCVVYGAGRTDSGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + KALN+ L I ++ FHAR SA+ + Y Y I Sbjct: 61 YVANFRCNTHLDAGVFVKALNSTL--PKDIVCKESTLAPDGFHARKSAVSKIYEYHITNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A+ + AW + + LD E M AA+ +G HDF+ F ++ +R I + S Sbjct: 119 PTPPAVCRQYAWHVRRRLDKEAMTRAAKLFLGSHDFSAFEGAGSPKATSVRNIMQSHIQS 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + N I RV A FL +R+ VG+L +G GK + L + DR + GP APPEGL Sbjct: 179 WENHIIYRVEANGFLRYMVRNIVGTLVYIGMGKIPPEAVMDILASGDRGQAGPTAPPEGL 238 Query: 240 YFDSVEY 246 + V+Y Sbjct: 239 FMMCVKY 245 >gi|254441675|ref|ZP_05055168.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307] gi|198251753|gb|EDY76068.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307] Length = 256 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 120/252 (47%), Positives = 157/252 (62%), Gaps = 6/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFCGWQRQTSDPSVQGAIEAALAKLEPRGHTIGAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +ALN +LK +SI+ V +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMDKTWDAFRLSEALNFHLK-PAPVSIVACVQVADDWHARFSALERRYLFRLVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE G+ W + + LD M+ A L+G HDFTTFRS CQA SP+RT+D D+ Sbjct: 120 APLVLEAGKVWQVSQKLDGAAMQAGADRLLGHHDFTTFRSTVCQADSPMRTLDGLDIEQV 179 Query: 181 -----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 180 ARSDGAQEFRFHVRARSFLHNQVRSFVGTLERVGAGAWTRDDVSAALNARDRTACGPVCP 239 Query: 236 PEGLYFDSVEYS 247 P GLY SV Y Sbjct: 240 PHGLYLASVGYP 251 >gi|114320390|ref|YP_742073.1| tRNA pseudouridine synthase A [Alkalilimnicola ehrlichii MLHE-1] gi|114226784|gb|ABI56583.1| tRNA pseudouridine synthase A [Alkalilimnicola ehrlichii MLHE-1] Length = 261 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 101/245 (41%), Positives = 140/245 (57%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + +EY+GSG+ GWQRQ + S+Q ++E A+ V E V V AGRTD+GVHA QV Sbjct: 4 RFALGLEYDGSGFCGWQRQDHAPSVQAALEAALSRVADEPVTVTCAGRTDTGVHATGQVV 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ NA L DT+S+ + V + FHARF A+RRSY Y ++ Sbjct: 64 HFETGAYRPEHAWVLGANANL--PDTVSVHWVQPVSEAFHARFGALRRSYRYVWYCSRSR 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AL +GR +LD E M +AA HL+GRHDF+ FR++ CQA P+R + DV + G Sbjct: 122 PALLRGRVAWSKYALDPEPMAMAAGHLLGRHDFSAFRAVACQAKHPVRELYRLDVWARGG 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + V A +FLH +R+ G+L L+G G+ +T L DR G AP EGLY Sbjct: 182 FVYLDVCANAFLHHMVRNLAGTLALIGRGERPATWAADLLAGGDRTRAGATAPAEGLYLV 241 Query: 243 SVEYS 247 V+Y Sbjct: 242 GVDYP 246 >gi|312862611|ref|ZP_07722852.1| tRNA pseudouridine synthase A [Streptococcus vestibularis F0396] gi|311101871|gb|EFQ60073.1| tRNA pseudouridine synthase A [Streptococcus vestibularis F0396] Length = 249 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L M+ AA LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESCDRNLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|228983397|ref|ZP_04143610.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776387|gb|EEM24740.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 252 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|188580854|ref|YP_001924299.1| tRNA pseudouridine synthase A [Methylobacterium populi BJ001] gi|238692887|sp|B1ZGA6|TRUA_METPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|179344352|gb|ACB79764.1| tRNA pseudouridine synthase A [Methylobacterium populi BJ001] Length = 252 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 111/251 (44%), Positives = 156/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGGPFCGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W + ALNA+L+ I+I++ +V F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLARDWRTDTVRDALNAHLR-PQPIAIVSAEVVTHDFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P LD + M AAQ L+GRHDF+ FR+ CQA+SP+RT++ DV Sbjct: 120 SPAALTRAHVWHVPWPLDADLMHAAAQRLLGRHDFSAFRAAECQAASPVRTLEQLDVTRQ 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCRRLSADDVAEILATKAKHRCGPLAPA 239 Query: 237 EGLYFDSVEYS 247 GL F V+Y Sbjct: 240 CGLTFVGVDYD 250 >gi|229094864|ref|ZP_04225869.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29] gi|229100941|ref|ZP_04231745.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28] gi|229113818|ref|ZP_04243253.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3] gi|228669689|gb|EEL25096.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3] gi|228682520|gb|EEL36593.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28] gi|228688607|gb|EEL42480.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29] Length = 252 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIFEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|328958698|ref|YP_004376084.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] gi|328675022|gb|AEB31068.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] Length = 279 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 142/247 (57%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY +I++Y+G+ + G+Q Q + ++QG I+KA+ ++T G V++HG+GRTDSGVHA QV Sbjct: 5 RYKLIVQYDGTHFAGFQIQPHDRTVQGEIQKALKIMTKGIEVIIHGSGRTDSGVHAKGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +ALN+ SD I + ++SIV+ +FHAR++ + Y YR+ + Sbjct: 65 IHFDYPFVIPAKNMKRALNSL--TSDEIFVKDVSIVEDEFHARYNTSGKKYQYRVDLNEI 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--NS 179 P ++ P LD + ++ A + L G HDF +F + H + +RT+ V + Sbjct: 123 PDPFKRLYTLHHPYPLDMDKLKNALKDLEGEHDFASFCASHSGRENKVRTVYEASVVKDD 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 F N + FL+ +R FVG+L + +G + ++++ L+ +DR E GP A P+GL Sbjct: 183 FNNELLFTFRGNGFLYNMVRIFVGTLLQIANGLRPADEIQRLLEVKDRNEAGPTAKPQGL 242 Query: 240 YFDSVEY 246 Y V Y Sbjct: 243 YLMEVYY 249 >gi|221640010|ref|YP_002526272.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131] gi|254764862|sp|B9KKX4|TRUA_RHOSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221160791|gb|ACM01771.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131] Length = 255 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 123/251 (49%), Positives = 163/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLELGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLAREWDPFRLAGALNAHLK-PLPVAIVAAARVSEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SPI+T+D + + Sbjct: 120 APEVHDRGRVWRVPHPLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASPIKTLDALTLETV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP+ PP Sbjct: 180 EGANGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|229153920|ref|ZP_04282050.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342] gi|228629601|gb|EEK86298.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342] Length = 252 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|69244266|ref|ZP_00602734.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257878927|ref|ZP_05658580.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257881556|ref|ZP_05661209.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257890781|ref|ZP_05670434.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|258615438|ref|ZP_05713208.1| tRNA pseudouridine synthase A [Enterococcus faecium DO] gi|261206813|ref|ZP_05921504.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289567364|ref|ZP_06447735.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|293563155|ref|ZP_06677615.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|293568529|ref|ZP_06679849.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|294614075|ref|ZP_06694002.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|294620867|ref|ZP_06700069.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|314939024|ref|ZP_07846289.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|314943424|ref|ZP_07850191.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|314948177|ref|ZP_07851572.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] gi|314952740|ref|ZP_07855717.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|314991371|ref|ZP_07856849.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|314995418|ref|ZP_07860520.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|68196452|gb|EAN10879.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257813155|gb|EEV41913.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257817214|gb|EEV44542.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257827141|gb|EEV53767.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|260078943|gb|EEW66643.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289160842|gb|EFD08771.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|291588865|gb|EFF20693.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|291593065|gb|EFF24647.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|291599569|gb|EFF30584.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291604885|gb|EFF34359.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|313590351|gb|EFR69196.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|313594045|gb|EFR72890.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|313595146|gb|EFR73991.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|313597796|gb|EFR76641.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|313641733|gb|EFS06313.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|313645389|gb|EFS09969.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] Length = 246 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FH+R++A+ + Y Y + Sbjct: 61 QVANFKTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|152984048|ref|YP_001347395.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7] gi|150959206|gb|ABR81231.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7] Length = 285 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 130/246 (52%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGVEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAESVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PGDISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E MR AAQ LVG HDFT+FR++ CQA SP++T+ H + G Sbjct: 137 RPAHMAEEVTWNHRPLDIERMREAAQVLVGTHDFTSFRAVQCQARSPVKTMHHVRLLEHG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P GLY Sbjct: 197 RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYL 256 Query: 242 DSVEYS 247 VEY Sbjct: 257 VRVEYP 262 >gi|49183176|ref|YP_026428.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|49476722|ref|YP_034493.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145077|ref|YP_081752.1| tRNA pseudouridine synthase A [Bacillus cereus E33L] gi|165873347|ref|ZP_02217948.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167642077|ref|ZP_02400301.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|196046214|ref|ZP_03113441.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|270000591|ref|YP_003329029.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] gi|291612229|ref|YP_003541012.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|62901423|sp|Q63H59|TRUA1_BACCZ RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|62901430|sp|Q6HPM7|TRUA1_BACHK RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|62901432|sp|Q6I4Q2|TRUA1_BACAN RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|49177103|gb|AAT52479.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|49328278|gb|AAT58924.1| tRNA pseudouridine synthase A (pseudouridylate synthase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978546|gb|AAU20096.1| tRNA-pseudouridylate synthase I [Bacillus cereus E33L] gi|164710915|gb|EDR16491.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167509964|gb|EDR85386.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|196022959|gb|EDX61639.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|224552852|gb|ACN55064.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|269850235|gb|ACZ49980.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] Length = 247 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 179 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|116051110|ref|YP_790059.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa UCBPP-PA14] gi|115586331|gb|ABJ12346.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 285 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PADISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + G Sbjct: 137 RPAHLAEEVTWNHRPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLLEHG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ G L +G G+ ++ L+ +DR+ G A P GLY Sbjct: 197 RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLETRDRRAGGVTAHPYGLYL 256 Query: 242 DSVEYS 247 VEY Sbjct: 257 VRVEYP 262 >gi|229015543|ref|ZP_04172540.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273] gi|229021754|ref|ZP_04178334.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272] gi|228739541|gb|EEL89957.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272] gi|228745766|gb|EEL95771.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273] Length = 252 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLAEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|77358715|ref|YP_338281.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 493] gi|153206765|ref|ZP_01945606.1| tRNA pseudouridine synthase A [Coxiella burnetii 'MSU Goat Q177'] gi|154705837|ref|YP_001424337.1| tRNA pseudouridine synthase A [Coxiella burnetii Dugway 5J108-111] gi|161830159|ref|YP_001596814.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 331] gi|165918506|ref|ZP_02218592.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 334] gi|212212657|ref|YP_002303593.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuG_Q212] gi|212218370|ref|YP_002305157.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuK_Q154] gi|226708643|sp|B6J6W3|TRUA_COXB1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708644|sp|B6J0H0|TRUA_COXB2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708645|sp|A9KFZ5|TRUA_COXBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708646|sp|A9ND24|TRUA_COXBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71066705|gb|AAZ22627.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 493] gi|120577128|gb|EAX33752.1| tRNA pseudouridine synthase A [Coxiella burnetii 'MSU Goat Q177'] gi|154355123|gb|ABS76585.1| tRNA pseudouridine synthase A [Coxiella burnetii Dugway 5J108-111] gi|161762026|gb|ABX77668.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 331] gi|165917752|gb|EDR36356.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 334] gi|212011067|gb|ACJ18448.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuG_Q212] gi|212012632|gb|ACJ20012.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuK_Q154] Length = 261 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 131/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+GS Y GWQ Q+ ++QG +EKA+ V V V AGRTD+GVHA Q Sbjct: 1 MARIALGIRYDGSAYHGWQVQEALKTVQGEVEKALSAVANHPVFVTCAGRTDAGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD N+ L ISIL V++ FHAR+SA+ R Y Y + + Sbjct: 61 VAHFDTTAYRSDHAWVFGANSNL--PHDISILWAKAVEEDFHARYSAMARRYRYIVYNHE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + + LD + M+ AQ+L+G HDF++F+ CQ+ +P+R I ++ Sbjct: 119 IRPAILRKAIGWHYRPLDEKRMQAGAQYLIGEHDFSSFQGAGCQSRTPVRKIFQIEIYRI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ I V A +FL +R+ G L +G G+ + L+A+DR++ G PP GLY Sbjct: 179 RRMVVIEVQANAFLLHMVRNIAGVLIAIGSGEKHPDWAQTVLKAKDRRQGGVTVPPNGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LVEVNYP 245 >gi|254854197|ref|ZP_05243545.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503] gi|300763651|ref|ZP_07073649.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017] gi|258607589|gb|EEW20197.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503] gi|300515928|gb|EFK42977.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017] Length = 248 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL A IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQAM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ +AL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|168211805|ref|ZP_02637430.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] gi|170710235|gb|EDT22417.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] Length = 248 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPS 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|163938150|ref|YP_001643034.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] gi|163860347|gb|ABY41406.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] Length = 252 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q + ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPHHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNSML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|325276985|ref|ZP_08142659.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51] gi|324097881|gb|EGB96053.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51] Length = 286 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 123/246 (50%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 20 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPIAVVCAGRTDAGVHGCGQV 79 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS++ + FHARF A R Y Y I Sbjct: 80 VHFDTRAVRDERAWTMGTNFNL--PHDISVVWSQPMPADFHARFKACARRYRYVIYNDPI 137 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H V G Sbjct: 138 RPAHLAEEVTWNHRPLDVERMAQAAQSLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHG 197 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + V A +FLH +R+ G L +G G+ + + L+ +DR+E G A P GLY Sbjct: 198 QMIVLDVRATAFLHHMVRNIAGVLMAIGSGERPVSWAREVLEGRDRREGGVTAHPYGLYL 257 Query: 242 DSVEYS 247 VEY Sbjct: 258 VQVEYP 263 >gi|299820989|ref|ZP_07052878.1| tRNA-pseudouridine synthase I [Listeria grayi DSM 20601] gi|299818010|gb|EFI85245.1| tRNA-pseudouridine synthase I [Listeria grayi DSM 20601] Length = 247 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 126/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+GSG+ G+Q Q + ++Q +E+A+ + GE V V +GRTD+GVHA Sbjct: 1 MPRYKVILAYDGSGFSGYQVQPHKRTVQSELEEALLKMHKGEFVRVTASGRTDTGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +AL I I ++ V FHAR+ + + Y Y I Sbjct: 61 QVIHFDSPLQIPNEKFQRALQRM--TPFDIGIHSVEQVPDDFHARYGTVGKEYRYVIKNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A P L E M+ A+Q L+G HDFT+F S + S +RTI + Sbjct: 119 TDYDPFSRNFALHYPYPLSIEKMQEASQILIGEHDFTSFCSARTEQDSKVRTIYSIEFLK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPEG 238 I I FL+ +R G+L +G G+ T+ LEKALQA+DR + AP +G Sbjct: 179 EKETITICYRGDGFLYNMVRILTGALLDIGQGRMTAETLEKALQAKDRTKLPSVTAPAQG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLWEVAY 246 >gi|312866252|ref|ZP_07726471.1| tRNA pseudouridine synthase A [Streptococcus downei F0415] gi|311098225|gb|EFQ56450.1| tRNA pseudouridine synthase A [Streptococcus downei F0415] Length = 248 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+QRQ S+Q +EK + + +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKAIISYDGTLFAGFQRQSKERSVQEELEKTLERLNSGNPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++++ V + FHAR++ ++Y + + T Sbjct: 61 QVIHFDLPQTRDEEKLRFGLDT--QSPEDIDVVSVEQVPEVFHARYNPHSKTYEFLVDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P +D M+ A L+G HDFT F + + +RTI V Sbjct: 119 RPKNPMMRAYATHFPYPVDLGAMQEAIADLLGTHDFTGFTASGTSVENKVRTISQAKVER 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L A+DR GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTILAAKDRNLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEITYD 248 >gi|89070283|ref|ZP_01157602.1| tRNA pseudouridine synthase A [Oceanicola granulosus HTCC2516] gi|89044122|gb|EAR50283.1| tRNA pseudouridine synthase A [Oceanicola granulosus HTCC2516] Length = 257 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 116/252 (46%), Positives = 158/252 (62%), Gaps = 6/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ +++QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYDGGPYAGWQRQDGPATVQGAIEAALARLEPGPHTIAAAGRTDAGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL + W P L +ALN +LK I+I+ + V +HARFSA R YL+R++ R+ Sbjct: 61 VAQADLAKAWEPFRLAEALNYHLK-PAPIAIVACARVADDWHARFSANERRYLFRLVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E+G+ W + + LD M+ A LVG HDFTTFRS CQA SP++T+D V + Sbjct: 120 APLPFERGQVWKVNQPLDAAAMQAGADLLVGHHDFTTFRSSICQADSPVKTLDELTVETV 179 Query: 181 -----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V ARSFLH Q+RSFVG+L+ VG G W + +AL A++RK CGP+AP Sbjct: 180 TRPDGYPEYRFHVRARSFLHNQVRSFVGTLERVGAGAWPPERVGEALAARERKACGPVAP 239 Query: 236 PEGLYFDSVEYS 247 P+GLY +V+Y Sbjct: 240 PQGLYLAAVKYP 251 >gi|110679351|ref|YP_682358.1| tRNA pseudouridine synthase A [Roseobacter denitrificans OCh 114] gi|122972811|sp|Q168C1|TRUA_ROSDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109455467|gb|ABG31672.1| tRNA pseudouridine synthase A [Roseobacter denitrificans OCh 114] Length = 260 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 125/251 (49%), Positives = 164/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EYNG+ + GWQRQK +IQG+IE+A+ + + AGRTD+GVHA+ Q Sbjct: 1 MHRYALKVEYNGAPFVGWQRQKEHPTIQGAIERALGKIAPGPHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK I+I + VD ++HARFSA +R YL+RI+ R+ Sbjct: 61 VAHCDLERDWDPFRLSEALNYHLK-PAPIAITACTAVDAEWHARFSARQRQYLFRILCRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP +KG W + + LD MR AA L+G+HDFTTFRS CQA SP++T+D DVN Sbjct: 120 APATHQKGLVWQVKQKLDVTAMREAAALLIGQHDFTTFRSTICQAESPVKTLDRLDVNEV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +G I V ARSFLH Q+RSFVG+L+ VG G T D+ +AL +DR CGP+ PP Sbjct: 180 DTPYGREIHFDVRARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLAHVVYD 250 >gi|326388515|ref|ZP_08210109.1| tRNA pseudouridine synthase A [Novosphingobium nitrogenifigens DSM 19370] gi|326206980|gb|EGD57803.1| tRNA pseudouridine synthase A [Novosphingobium nitrogenifigens DSM 19370] Length = 261 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G+ + G+QRQ +G S+Q ++E+A V GE +V+H AGRTD+GVHA Sbjct: 1 MTRFALTLEWDGTPFMGFQRQAHGPSVQQAVEEATQSVIGEEIVLHAAGRTDTGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH +L R++ P L +A+NA LK I++L+ V +HARFS I R+Y YRII R+ Sbjct: 61 RAHLELSRDFDPFRLGEAINARLK-PHPIAVLDCVRVADDWHARFSCIGRAYEYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE GRAW + + LD E M AAQ LVG HDFTTFRS+HCQA+SP++T+D DV Sbjct: 120 APLTLEAGRAWRVTRPLDAEAMHEAAQVLVGHHDFTTFRSVHCQAASPLKTLDRLDVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L LVG G+W D+ AL+A++R + G APPEGLY Sbjct: 180 GDEVLIAAAARSFLHHQVRSMVGCLALVGLGQWNRDDMAAALEAKNRCKLGLNAPPEGLY 239 Query: 241 FDSVEYS 247 F S +Y Sbjct: 240 FISAQYP 246 >gi|228898895|ref|ZP_04063177.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222] gi|228963242|ref|ZP_04124411.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto str. T04001] gi|228796500|gb|EEM43939.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto str. T04001] gi|228860795|gb|EEN05173.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222] Length = 252 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|170689686|ref|ZP_02880864.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|177656196|ref|ZP_02937177.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|190567334|ref|ZP_03020248.1| tRNA pseudouridine synthase A [Bacillus anthracis Tsiankovskii-I] gi|196036037|ref|ZP_03103438.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|218901347|ref|YP_002449181.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|225862194|ref|YP_002747572.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|227812815|ref|YP_002812824.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|228912881|ref|ZP_04076528.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925395|ref|ZP_04088491.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228943947|ref|ZP_04106332.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089273|ref|ZP_04220554.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42] gi|229119804|ref|ZP_04249065.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201] gi|229182536|ref|ZP_04309787.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1] gi|229604554|ref|YP_002864793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|254686641|ref|ZP_05150500.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066] gi|254726279|ref|ZP_05188061.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055] gi|254735284|ref|ZP_05192992.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western North America USA6153] gi|254739476|ref|ZP_05197174.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254755530|ref|ZP_05207564.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum] gi|301051879|ref|YP_003790090.1| tRNA pseudouridine synthase A [Bacillus anthracis CI] gi|170666357|gb|EDT17142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|172079844|gb|EDT64958.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|190561461|gb|EDV15432.1| tRNA pseudouridine synthase A [Bacillus anthracis Tsiankovskii-I] gi|195991406|gb|EDX55373.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|218535501|gb|ACK87899.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|225789774|gb|ACO29991.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|227005095|gb|ACP14838.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|228600991|gb|EEK58560.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1] gi|228663705|gb|EEL19284.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201] gi|228694112|gb|EEL47794.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42] gi|228815780|gb|EEM62016.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834317|gb|EEM79858.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846817|gb|EEM91822.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268962|gb|ACQ50599.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|300374048|gb|ADK02952.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis str. CI] Length = 252 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|34498219|ref|NP_902434.1| tRNA pseudouridine synthase A [Chromobacterium violaceum ATCC 12472] gi|42559750|sp|Q7NUD6|TRUA_CHRVO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|34104072|gb|AAQ60432.1| pseudouridylate synthase A [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 +R + IEY+G + GWQ Q +G+++Q + +A+ + G VV H AGRTD+GVHA Q Sbjct: 1 MRIALGIEYDGRAFAGWQSQPHGNTVQDRLNRALGQIAGNRDVVTHAAGRTDAGVHAAMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA L ++++ V FHARFSA RSY Y ++T Sbjct: 61 VVHFDTDASRPLNAWVRGVNALL--PPEVAVVWAREVGDDFHARFSAFSRSYSYFLLTHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L G+ ++LD MR AA L+GRHDF++FR+ CQA SP++ + D+ Sbjct: 119 VRSCLLAGKVGWYHQALDVAAMREAAAGLLGRHDFSSFRASECQAKSPVKDLQRLDIIEA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + A +FLH +R+ VG+L VG G + D++ L A+DR P P+GLY Sbjct: 179 DGLLRFDLHADAFLHHMVRNIVGALLYVGKGALSPADMQSLLAARDRTSAPPTFMPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LTGVGYP 245 >gi|47570254|ref|ZP_00240905.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] gi|47553078|gb|EAL11478.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] Length = 247 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 179 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|296284450|ref|ZP_06862448.1| tRNA pseudouridine synthase A [Citromicrobium bathyomarinum JL354] Length = 258 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 123/246 (50%), Positives = 167/246 (67%), Gaps = 1/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +E++G+ +FG QRQK+G S+Q ++E+A VTG+ V +H AGRTD+GVHA+ Sbjct: 4 TRYALTLEFDGTPFFGLQRQKDGPSVQQAVEEAAQAVTGQQVTLHSAGRTDTGVHAIAMR 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +HFD+ + P + +A+NA+L+ I++ + V + +HARFS I R YLYRII R+A Sbjct: 64 SHFDVESKLTPFRMGEAINAHLR-PAPIAVTHCEAVPEDWHARFSCIGRRYLYRIINRRA 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 PL LEK RAWL+ D E M AAQ LVG HDFTTFRS+HCQA+SP++T+D DV G Sbjct: 123 PLTLEKNRAWLVSPECDAEAMHRAAQSLVGHHDFTTFRSVHCQAASPVKTLDRLDVERAG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + V ARSFLH Q+RS VG L LVG G+W + + L+A+DR+E G AP GLYF Sbjct: 183 DEIRVHVAARSFLHHQVRSMVGCLALVGMGRWNEGRIAQVLEAKDRQELGLNAPSHGLYF 242 Query: 242 DSVEYS 247 Y Sbjct: 243 VEAVYP 248 >gi|238855099|ref|ZP_04645427.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 269-3] gi|260664884|ref|ZP_05865735.1| tRNA pseudouridine synthase A [Lactobacillus jensenii SJ-7A-US] gi|282931908|ref|ZP_06337380.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] gi|238832343|gb|EEQ24652.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 269-3] gi|260561367|gb|EEX27340.1| tRNA pseudouridine synthase A [Lactobacillus jensenii SJ-7A-US] gi|281303960|gb|EFA96090.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] Length = 262 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ ++ G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMSKGKRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + ALN+ + I SIVD+ FH ++S + Y Y + Sbjct: 61 QVIHFDFPNDNIPANKMVLALNSMM--PTDIVFKEASIVDESFHVQYSTKGKWYRYIVNQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 + ++ P LD M+ AA L+G HDFT+F + Q +RTI + + Sbjct: 119 DRFVDPFKRFYTGHYPYKLDVSKMQEAASDLLGEHDFTSFAASGGQIIDKVRTIFYVKIW 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N I + FL+ +R VG+L +G+G+ DLE+ + A+DR+E AP Sbjct: 179 QKPEENEIVFDFIGNGFLYNMVRIMVGALLEIGNGRRPIHDLERVILAKDRQEVRNTAPA 238 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 239 SGLYLYHVFYE 249 >gi|149175153|ref|ZP_01853776.1| tRNA pseudouridine synthase A [Planctomyces maris DSM 8797] gi|148846131|gb|EDL60471.1| tRNA pseudouridine synthase A [Planctomyces maris DSM 8797] Length = 267 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 96/268 (35%), Positives = 130/268 (48%), Gaps = 23/268 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+GS Y GWQ Q NG S+Q +EKAI +T + V AGRTD+GVHAL Q Sbjct: 1 MRNIKLTLAYDGSEYAGWQVQPNGPSVQACVEKAIEQLTQQRSPVLVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F L L +L ++I + + V FHA +SAI++ Y Y I Sbjct: 61 VASFQTESAIPCKNLQTGLQRFL--PESICVREVREVPPDFHATYSAIQKRYRYVIHNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P K + LD + M A Q L+G+HDF F S + ++ +RTI V Sbjct: 119 VPYPFLKKYVSEFGRPLDSDRMHAAGQQLLGQHDFRCFESHYPNKATSVRTITELTVQRT 178 Query: 181 G---------------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 G I + VVA FL+ +R+ VG+L VG G+WTS D++ Sbjct: 179 GVWPVWGVLEQAHLSMENSTSAEFITVDVVADGFLYNMVRAIVGTLLDVGVGRWTSNDVQ 238 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 K L DR + GP AP GLY V+Y Sbjct: 239 KILTGMDRSQAGPTAPACGLYLVQVDYP 266 >gi|332141777|ref|YP_004427515.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Deep ecotype'] gi|327551799|gb|AEA98517.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Deep ecotype'] Length = 264 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ +GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA Q Sbjct: 1 MGRIALGIEYDGAAVYGWQRQREVPSVQEHLEKALSTVANEPIEVQCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +NA L +++++ V FHARFSA R Y Y I + Sbjct: 61 VVHFNCDAPRSERAWTLGVNANL--PNSVAVTWAKNVADDFHARFSATHRRYRYVIHNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ I + LD + M +AAQ L+G DFT+FR+ CQ+ +P R + + V Sbjct: 119 MRPAILSSGVTHIHRELDEKKMHLAAQALLGEQDFTSFRAALCQSKTPFRNVTNVGVYRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +FLH +R+ G+L +G G+ + L +DR + A P GLY Sbjct: 179 GRYVIIDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LVDVTYP 245 >gi|65317587|ref|ZP_00390546.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012] Length = 257 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 11 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 70 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 71 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 128 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 129 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 189 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 248 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 249 YLWQVNYN 256 >gi|290891783|ref|ZP_06554780.1| truA protein [Listeria monocytogenes FSL J2-071] gi|290558377|gb|EFD91894.1| truA protein [Listeria monocytogenes FSL J2-071] Length = 248 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMNKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ KAL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|148993376|ref|ZP_01822893.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP9-BS68] gi|168488681|ref|ZP_02712880.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP195] gi|147927931|gb|EDK78951.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP9-BS68] gi|183572616|gb|EDT93144.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP195] gi|332072441|gb|EGI82924.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17570] Length = 249 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|78485146|ref|YP_391071.1| tRNA pseudouridine synthase A [Thiomicrospira crunogena XCL-2] gi|123741632|sp|Q31HH6|TRUA_THICR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78363432|gb|ABB41397.1| tRNA pseudouridine synthase A [Thiomicrospira crunogena XCL-2] Length = 262 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY G+ Y GWQ QK+ S+Q +EKA+ + E + ++ AGRTD+GVHA+ Q Sbjct: 1 MTLLAIGIEYQGTAYCGWQHQKHCDSVQQQLEKALSYIADEPIGLNCAGRTDTGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHF+ + +N L + I + + + + FHARFSA+ R Y Y I R Sbjct: 61 IAHFETNASRPDKAWIQGVNTQL--PNDIRVTWVKPMPEDFHARFSAVARQYRYVIFNRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ R + LD + M AAQ L+G +DF++FR+ CQAS R + + V+ Sbjct: 119 VHSAILANRVTWENRPLDVKKMHAAAQDLLGENDFSSFRAAGCQASHANRNVQYLQVSRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + + + A +FLH +R+ VG+L VG + + L+ QDR + G AP GLY Sbjct: 179 GNFVFVDIQANAFLHHMVRNIVGTLLEVGRLDKPVEWVSELLKKQDRTQAGMTAPAAGLY 238 Query: 241 FDSVEYS 247 F + Y Sbjct: 239 FVNALYP 245 >gi|228989350|ref|ZP_04149341.1| tRNA pseudouridine synthase A [Bacillus pseudomycoides DSM 12442] gi|228995533|ref|ZP_04155201.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock3-17] gi|228764262|gb|EEM13141.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock3-17] gi|228770428|gb|EEM19001.1| tRNA pseudouridine synthase A [Bacillus pseudomycoides DSM 12442] Length = 252 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHARG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I + + + FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWMNALNTML--PDDIVVRQVEKKTEDFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ E++R A + +G HDFT+F S +RTI D+ Sbjct: 124 KNADVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSTKTDKKDKVRTIYEIDLME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L+ QDR+ G + P GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKMVPDSIPEILKKQDRRFAGKMVPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|313906313|ref|ZP_07839656.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] gi|313468869|gb|EFR64228.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] Length = 271 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 84/255 (32%), Positives = 124/255 (48%), Gaps = 10/255 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ Y G+Q Q NG ++Q + +A+ +TGE + GA RTD+GVHA Sbjct: 4 MKRIMLIIAYDGTNYCGFQVQPNGVTVQELVNRAVSELTGEEIRTIGASRTDAGVHARGN 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD ALN L D I + V FH R++ ++Y YRI+ R+ Sbjct: 64 VVVFDTKARMPGDKYSYALNPRL--PDDIKVQLSREVSPDFHPRYTDTVKTYEYRILNRR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSPIRTIDHFDVN 178 P + SLD + M+ AA++L G HDF +F++ +RTI V Sbjct: 122 MPDPTRRLNTLFNYFSLDADRMQAAARYLEGTHDFRSFQASGETNPDKETVRTIYSASVT 181 Query: 179 S------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +LI R+ FL+ +R G+L +G GK D++K + A+ R GP Sbjct: 182 RGNAADGNEDLITFRITGNGFLYNMVRILAGTLIEIGRGKLEPEDMKKIMDARSRDAAGP 241 Query: 233 LAPPEGLYFDSVEYS 247 APP+GL + Y Sbjct: 242 TAPPQGLTLVEIRYP 256 >gi|229074203|ref|ZP_04207249.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18] gi|228708973|gb|EEL61100.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18] Length = 252 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIFEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|322411078|gb|EFY01986.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 249 Score = 290 bits (744), Expect = 9e-77, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + +TG + V +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHERTVQEEIEKTLQKLTGGQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + D I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDMNKMQEAIKTLVGTHDFTGFTAAGTSVKNKVRTITEATLVQ 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIHYE 248 >gi|304405587|ref|ZP_07387246.1| tRNA pseudouridine synthase A [Paenibacillus curdlanolyticus YK9] gi|304345626|gb|EFM11461.1| tRNA pseudouridine synthase A [Paenibacillus curdlanolyticus YK9] Length = 248 Score = 290 bits (744), Expect = 9e-77, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 126/248 (50%), Gaps = 3/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R M + Y+G+ Y G+Q Q +G++IQ +E AI +TGE + + G+GRTD+GVHA Sbjct: 1 MSRNIVMTVSYDGTTYSGFQSQPSGNTIQDIVETAIHSLTGEQLRIIGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F A+N L D I IL + FHAR SA R++Y Y I R Sbjct: 61 QVFNFHTESRIPQERWALAMNTRL--PDDIVILEAWEAPEAFHARHSAKRKTYRYTIDRR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + A+ P L MR A HL+G HDFT+F SI +RTI + Sbjct: 119 KFPDVFSRMYAFHHPTPLQVGAMREALTHLIGEHDFTSFTSIQSTQPHHVRTIFEAWLEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+ + V FL+ +R G++ VG+GK D+ L A DR GP A GL Sbjct: 179 DGPLLYLFVTGNGFLYNMVRIIAGTMMWVGEGKLAPADIPAMLAAVDRTCAGPTAMAHGL 238 Query: 240 YFDSVEYS 247 +VEY Sbjct: 239 MLWNVEYP 246 >gi|300024227|ref|YP_003756838.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans ATCC 51888] gi|299526048|gb|ADJ24517.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans ATCC 51888] Length = 246 Score = 290 bits (744), Expect = 9e-77, Method: Composition-based stats. Identities = 132/247 (53%), Positives = 171/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ G SIQG++E AI +GE V GAGRTD+GVHAL Q Sbjct: 1 MPRYRITIEYDGTPFIGWQRQAEGVSIQGALETAIRKFSGEAPGVRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + W P + A+N +L+ + I ++ + VD F ARFSA++R Y YR++TR+ Sbjct: 61 VAHFDLEKTWEPGRIRDAMNFHLR-PNPIGVVAAAQVDDAFDARFSAVKRYYEYRLLTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP L++ R W ++LD M AAQ LVG+HDFTTFR+ CQA SP++T+D FDV+ Sbjct: 120 APPILQRHRVWWTMQNLDAAAMHAAAQELVGKHDFTTFRAAQCQAKSPVKTLDVFDVSRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I RV ARSFLH Q+RS VGSLKLVG+GKW+ DL AL A +R+ CGP+AP GLY Sbjct: 180 GEEIVCRVSARSFLHHQVRSMVGSLKLVGEGKWSRADLASALAAANREACGPVAPAAGLY 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LVGVDYE 246 >gi|253682551|ref|ZP_04863348.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] gi|253562263|gb|EES91715.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] Length = 246 Score = 290 bits (744), Expect = 9e-77, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 132/248 (53%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R +IIEY+GS Y GWQ+QK+ ++Q +E+AI +T + G RTD+GVHA Sbjct: 1 MKRNVKLIIEYDGSNYSGWQKQKHSITVQQKVEEAISEITKTDTEIIGCSRTDAGVHARN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F P A+N+ L I I S V FHARF + + Y+Y I+ R Sbjct: 61 FVANFITESSVPPSKFKYAINSKL--PKDIVIKKSSEVPLDFHARFHSKGKKYVYTILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN 178 + P +++ + K LD M++A+++ +G H+F +F + S +RTI + DV Sbjct: 119 EEPPTIDRNVMYHFNKDLDVNAMKMASKYFIGSHEFDSFYKKSGSSVKSTLRTIYYCDVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++I+ V+ FL+ +R G+L G G+ D++ + A+DR++ G PP+G Sbjct: 179 KCEDVIKFTVIGEGFLYNMVRIMAGTLIEAGIGRIRPEDIKAIILAKDREKAGRSLPPQG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLQEVLY 246 >gi|71906507|ref|YP_284094.1| tRNA pseudouridine synthase A [Dechloromonas aromatica RCB] gi|123774503|sp|Q47HQ7|TRUA_DECAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71846128|gb|AAZ45624.1| tRNA pseudouridine synthase [Dechloromonas aromatica RCB] Length = 262 Score = 290 bits (744), Expect = 9e-77, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+G+ GWQ Q G ++Q ++E A+ V G V V AGRTD+GVHA QV Sbjct: 1 MRVALGIEYCGTGFHGWQSQAGGGTVQDALEAALGEVAGVPVGVLCAGRTDAGVHATHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + +N++L + +++ V + FHARFSA R Y Y ++ R Sbjct: 61 AHFDAPVDRPLTAWVRGVNSHL--PEGVAVRWAQPVAEDFHARFSARGRRYRYLLLNRPQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L +GR L+ E M+ A L+G HDF+ FR+ +CQA SP++ + +V G Sbjct: 119 RPGLWQGRVGWFHWPLELEAMQEACLRLLGEHDFSAFRAANCQAKSPVKHMSRAEVRQCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+ A +FLH +R+ VG+L +G G +E LQ +DRK P P+GLYF Sbjct: 179 NMFVFDFEASAFLHHMVRNLVGTLVYIGKGTQQPDWIEALLQTKDRKLAAPTFSPDGLYF 238 Query: 242 DSVEYS 247 Y Sbjct: 239 RGPVYE 244 >gi|229542172|ref|ZP_04431232.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1] gi|229326592|gb|EEN92267.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1] Length = 245 Score = 290 bits (744), Expect = 9e-77, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q ++Q IEKA+ + G V +GRTD+GVHA+ Sbjct: 1 MKRVKCTVSYDGSRFAGYQVQPGQRTVQQEIEKALATLHKGRHVKTAASGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L IS+ + D FHAR+S + Y YRI Sbjct: 61 QVIHFDTDLSIPETSWPAALNSLL--PGDISVSKAAYADPAFHARYSVKEKEYRYRIYFS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A + SLD E M AA+ ++G HDFT+F S + IRT+ Sbjct: 119 HVRSPFKHRYALRVWYSLDIEAMEAAAETVLGTHDFTSFCSAKTEVEDKIRTLKEIRFLQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + I FL+ +R G+L +G GK ++ + L+ ++R G APPEGL Sbjct: 179 QDDELVICFKGNGFLYNMVRILTGTLLEIGSGKRDPGEMREILEKRNRIYAGKTAPPEGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWKVSY 245 >gi|134094449|ref|YP_001099524.1| tRNA pseudouridine synthase A [Herminiimonas arsenicoxydans] gi|189030136|sp|A4G4G0|TRUA_HERAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|133738352|emb|CAL61397.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Herminiimonas arsenicoxydans] Length = 275 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 94/250 (37%), Positives = 143/250 (57%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y+G+ + GWQ Q NG ++Q +E A++ T + + AGRTD+GVHAL QV Sbjct: 12 RRIVLGVQYDGAPWQGWQTQLNGLTVQDKLEFALYKFTQQTITTACAGRTDAGVHALEQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD----KQFHARFSAIRRSYLYRII 117 HFD E + +N +L +I++ S V + FHARFSA R+Y Y + Sbjct: 72 VHFDTTLERDMQSWVRGVNTFL--PSSIAVRWASEVAHDPAENFHARFSARSRTYHYMLY 129 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G+A + ++LD M+ AA HL+G+HDF+ FRS+ CQA SP++T+ + Sbjct: 130 NNPVRSPLLEGKAGWVFRALDIAKMQEAAAHLLGQHDFSAFRSVQCQAKSPVKTMHAIKI 189 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+LI V A +FLH +R+ VGSL VG+G + L++ L Q+RK P P+ Sbjct: 190 ERRGDLIMFTVHANAFLHHMVRNIVGSLIYVGNGTQAPSWLKEVLAGQERKFAAPTFMPD 249 Query: 238 GLYFDSVEYS 247 GLY ++Y Sbjct: 250 GLYLAKIDYD 259 >gi|167032538|ref|YP_001667769.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1] gi|166859026|gb|ABY97433.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1] Length = 286 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 123/246 (50%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH Q+ Sbjct: 20 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQI 79 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS++ + FHARF A R Y Y I Sbjct: 80 VHFDTRAVRDERAWTMGTNFNL--PHDISVVWSQPMPADFHARFKACARRYRYVIYNDPI 137 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H V G Sbjct: 138 RPAHLAEEVTWNHRPLDVERMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHG 197 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + V A +FLH +R+ G L +G G+ T + L+ ++R+E G A P GLY Sbjct: 198 QMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVTWAREVLEGRNRREGGVTAHPYGLYL 257 Query: 242 DSVEYS 247 VEY Sbjct: 258 VQVEYP 263 >gi|308270748|emb|CBX27358.1| tRNA pseudouridine synthase A [uncultured Desulfobacterium sp.] Length = 246 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 137/248 (55%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MI+ + + IEY+G+ + GWQRQ NG +IQG IEKAIF +T + + + GAGRTD+GVHAL Sbjct: 1 MIKNFKLTIEYDGTAFNGWQRQLNGRTIQGEIEKAIFAMTKQKIALTGAGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F P + LN+ L I I V ++FH+R+ + + Y Y+I+ R Sbjct: 61 QVANFICDTNLEPDSFYRGLNSLL--PGDIIIKLCEQVCEKFHSRYDSKSKLYRYKILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VN 178 P A+ + W I LD + MR A + G DF F S IRT+ + + Sbjct: 119 PLPSAIGRNYLWFIKSPLDLKAMREAVLFIAGTRDFKAFEGSGSPRKSTIRTVLRSELIE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + N+I+ + A FL +R+ VGSL VG GK D++ L ++DR++ APP G Sbjct: 179 NEDNIIQFEIEADGFLRFMVRNIVGSLISVGLGKLKPLDIKTILDSKDRRKASATAPPGG 238 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 239 LFLVKVRY 246 >gi|149006661|ref|ZP_01830347.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP18-BS74] gi|147761576|gb|EDK68540.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP18-BS74] Length = 249 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFDGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|118475910|ref|YP_893061.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|118415135|gb|ABK83554.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] Length = 264 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 18 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 77 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 78 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 135 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 136 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 195 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 196 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 255 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 256 YLWQVNYN 263 >gi|218529891|ref|YP_002420707.1| tRNA pseudouridine synthase A [Methylobacterium chloromethanicum CM4] gi|254789640|sp|B7KVW3|TRUA_METC4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218522194|gb|ACK82779.1| tRNA pseudouridine synthase A [Methylobacterium chloromethanicum CM4] Length = 250 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 111/250 (44%), Positives = 156/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ +SIL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVSILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ DV Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRE 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|40063298|gb|AAR38116.1| tRNA pseudouridine synthase A [uncultured marine bacterium 578] Length = 247 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E A+ LV V V GRTDSGVHA Q Sbjct: 1 MKIALGVEYLGTNFNGWQIQKSGIRTVQEVVESALSLVANHPVRVFCCGRTDSGVHAKEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ N L ++ VD FHARF+A RSY Y+I Sbjct: 61 VIHFETDSNRSNEAWVFGGNVNL--PSDVNFSWAKDVDDDFHARFNAYARSYEYKIHNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +L P+SL+ + MR AA L+G HDF++FR CQA SP++T+++ D+ Sbjct: 119 VRSSLNANYYLWEPRSLNIDEMRKAANFLIGEHDFSSFRGRLCQAKSPVKTVEYLDIIES 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + +++ A +FLH +R+ VG+L +G G+ + + L+++DR+E GP A P+GLY Sbjct: 179 DDNLIVKIKANAFLHHMVRNIVGTLLKIGRGERDAEWMLSVLESKDRREAGPTAEPQGLY 238 Query: 241 FDSVEY 246 F Y Sbjct: 239 FIKAYY 244 >gi|75764616|ref|ZP_00744060.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487896|gb|EAO51668.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 264 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 18 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 77 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 78 QVIHFDTPLSLEEWQWNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLS 135 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 136 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 195 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 196 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 255 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 256 YLWEVNYN 263 >gi|304392304|ref|ZP_07374245.1| tRNA pseudouridine synthase A [Ahrensia sp. R2A130] gi|303295408|gb|EFL89767.1| tRNA pseudouridine synthase A [Ahrensia sp. R2A130] Length = 251 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 127/251 (50%), Positives = 161/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY IIEY+G Y GWQRQ + S+QG+IE A+ + +V GAGRTD+GVHAL Q Sbjct: 1 MGRYRFIIEYDGKPYAGWQRQPDQPSVQGAIEAALGRLGEPDPIVQGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R W L +ALNA+L+ + ++I++ D +FHARFSA +R+YLYRII Sbjct: 61 VAHSDLTRPWTGFRLAEALNAHLRKAGDPVAIIDCEPCDDEFHARFSATQRAYLYRIIDH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF---D 176 +APLA++ GRAW + LD + M AA LVG HDFTTFRS CQA SP++T+ Sbjct: 121 RAPLAVDAGRAWNVKTPLDVDAMNKAAARLVGEHDFTTFRSTECQARSPVKTLGTLVATR 180 Query: 177 VNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V G +EI ARS+LH Q+RS G L+LVG GKW+ D +L A DR C P+AP Sbjct: 181 VQRHGRSEVEITTTARSYLHNQVRSLAGCLRLVGCGKWSPDDAAASLAAMDRTACAPVAP 240 Query: 236 PEGLYFDSVEY 246 GLY SV Y Sbjct: 241 AHGLYLTSVTY 251 >gi|240138195|ref|YP_002962667.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens AM1] gi|240008164|gb|ACS39390.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens AM1] Length = 250 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 110/251 (43%), Positives = 156/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAEVVTQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ DV Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRE 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEYS 247 GL F V+Y Sbjct: 240 CGLTFVGVDYP 250 >gi|228931644|ref|ZP_04094550.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228828072|gb|EEM73800.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 252 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L + I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PNDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|295398321|ref|ZP_06808363.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563] gi|294973460|gb|EFG49245.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563] Length = 285 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ + ++Y+G+ + G+Q Q NG ++Q ++EKA+ L++ G + V G+GRTDSGVHAL Sbjct: 1 MPRFKVTLQYDGTPFVGFQVQPNGHTVQEALEKALKLMSKGHDIQVVGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + +A+N+ L D I I + V+ FHARF + Y+Y++ T Sbjct: 61 QVIHFDYPAEIGEEAVLRAMNSIL--DDAIRITKVERVEDDFHARFHTNGKKYIYKVDTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P D M+ A + ++G HDF +F S ++ +R I +V + Sbjct: 119 KFPSPFTRQYMYHHPYRTDVTRMQTALKDIIGVHDFKSFCSTKTDKTNFVREIYRAEVTA 178 Query: 180 FGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ +R VG+ +GDG ++++ + A+DR E GP A Sbjct: 179 DPDAETLTFVFEGSGFLYNMVRILVGTTLQIGDGLRPVDEMKRLITAEDRNEAGPTAAAH 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLAEVYY 247 >gi|228905939|ref|ZP_04069836.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 200] gi|228853754|gb|EEM98514.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 200] Length = 252 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPNSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|90021726|ref|YP_527553.1| pseudouridylate synthase [Saccharophagus degradans 2-40] gi|89951326|gb|ABD81341.1| tRNA pseudouridine synthase A [Saccharophagus degradans 2-40] Length = 289 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 95/253 (37%), Positives = 141/253 (55%), Gaps = 8/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY+GS Y G+QRQ ++Q +EKA+ V E V + AGRTD+GVHA Sbjct: 22 MRRVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVANEPVTIVCAGRTDAGVHATS 81 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+ HFD + + +N +L +I +++ V FHARFSA+ R+Y Y I Sbjct: 82 QIVHFDTLAGRPSKAWLQGVNTHL--PFSIRVISAKEVGFDFHARFSALSRTYRYVIHVS 139 Query: 120 QAPLALEKGRAWLIPKS-----LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 Q A + LD M+ AA L+G HDFT+FR++HCQA+SP+RT++ Sbjct: 140 QVRSAHLVNGVTWVKLPQKLSGLDVPAMQEAASLLLGEHDFTSFRTVHCQAASPVRTMEV 199 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 DV G I ++V A +FLH +R+ VG L VG G+ + + + ++ +DR + A Sbjct: 200 ADVVQMGEFIVVQVTANAFLHHMVRNIVGVLLRVGRGELKPSRVTELIELRDRSQAAETA 259 Query: 235 PPEGLYFDSVEYS 247 P GLYF +V+Y Sbjct: 260 PAAGLYFVNVQYP 272 >gi|84503354|ref|ZP_01001423.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597] gi|84388264|gb|EAQ01215.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597] Length = 255 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 111/251 (44%), Positives = 160/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALQVEYHGAPFAGWQRQADQPSVQGAIEAALARLEPGPHTIAAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL ++W P L +ALN +L+ ++I + V + +HARFSA+ R Y++R++ R+ Sbjct: 61 VAQCDLEKDWDPFRLSEALNHHLR-PAPVAIRACARVAEDWHARFSALERRYMFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W +P LD E +R A HLVG HDFTTFRS+ CQA SP++T+D + Sbjct: 120 APATHDAGLVWQVPHRLDPEAIRAGAAHLVGHHDFTTFRSVICQAKSPVKTLDEIRIEEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + + ARSFLH Q+RS VG+L+ VG G+W + + +AL+A+DR CGP+ PP Sbjct: 180 DGFSGPELRFHLRARSFLHNQVRSIVGTLERVGAGRWPPSRVAEALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLVGVGYP 250 >gi|289167524|ref|YP_003445793.1| tRNA pseudouridine synthase A [Streptococcus mitis B6] gi|288907091|emb|CBJ21925.1| tRNA pseudouridine synthase A [Streptococcus mitis B6] Length = 249 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + E + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKEQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYTKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E MR A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLTV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|169335662|ref|ZP_02862855.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM 17244] gi|169258400|gb|EDS72366.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM 17244] Length = 244 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G Y GWQ Q NG S++ ++ AI + E V ++G+GRTDSGVHAL Q Sbjct: 1 MRNILITIEYDGKNYVGWQMQNNGISVEEKVKTAIEKLVKEEVKLYGSGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A F L +N++L + I ++ ++ FHAR+SA + Y+Y I R Sbjct: 61 AASFYTNSNISADKLPYGINSFL--PEDIRVIKAEEKEEDFHARYSAKGKEYVYLIYNRS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + KGRA + LD + M+ A++ L+G HDF F S +R I D+ Sbjct: 119 IMNPIYKGRASHVFYKLDLDKMKRASKSLIGIHDFAGFMGSGSDVKSTVREIYDIDITKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI+I++ FL+ +R V SL +G G++ +E+ L+ + R AP GLY Sbjct: 179 NDLIKIKISGSGFLYNMVRIIVASLIDIGRGRFDENRIEEILETKQRSMANVTAPAVGLY 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LNKVFY 244 >gi|46908770|ref|YP_015159.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b str. F2365] gi|47093538|ref|ZP_00231299.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b H7858] gi|226225144|ref|YP_002759251.1| pseudouridylate synthase I [Listeria monocytogenes Clip81459] gi|254825041|ref|ZP_05230042.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194] gi|254992719|ref|ZP_05274909.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-064] gi|255520577|ref|ZP_05387814.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-175] gi|51316671|sp|Q71WI0|TRUA_LISMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259550404|sp|C1KZ13|TRUA_LISMC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46882043|gb|AAT05336.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b str. F2365] gi|47018098|gb|EAL08870.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b H7858] gi|225877606|emb|CAS06320.1| Putative pseudouridylate synthase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594283|gb|EFG02044.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194] gi|328468084|gb|EGF39090.1| tRNA pseudouridine synthase A [Listeria monocytogenes 1816] Length = 248 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ +AL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|148986314|ref|ZP_01819186.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71] gi|147921782|gb|EDK72913.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71] gi|301800423|emb|CBW33056.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae OXC141] Length = 249 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+++ VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQVITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|37527059|ref|NP_930403.1| tRNA pseudouridine synthase A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786492|emb|CAE15547.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 279 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+QG +E+A+ V E + V AGRTD+GVHA QV Sbjct: 16 MKIALGIEYDGSRYYGWQRQQEVKSVQGCLEEALSKVADEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N +L I++ + VD+ FHARFSA R Y Y I + Sbjct: 76 VHFETSVQRKDAAWTMGVNVHL--PPDIAVRWVKTVDEGFHARFSATARRYRYIIFNHRY 133 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ ++G +DFT+FR++ CQ+ +P R + H +VN +G Sbjct: 134 RPAVLANGVTHFHYPLDEKRMHQAAQCILGENDFTSFRAVQCQSKTPWRNVMHINVNRYG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +G G + + L +DR + A GLY Sbjct: 194 HYVVIDIKANAFVHHMVRNIAGSLMEIGCGNQDINWMAQLLALKDRAKAAATAKAAGLYL 253 Query: 242 DSVEYS 247 +V+Y Sbjct: 254 VAVDYP 259 >gi|225028683|ref|ZP_03717875.1| hypothetical protein EUBHAL_02962 [Eubacterium hallii DSM 3353] gi|224953993|gb|EEG35202.1| hypothetical protein EUBHAL_02962 [Eubacterium hallii DSM 3353] Length = 253 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y M I Y+GS Y+GW+ Q + +IQG +E + + GE + V GAGRTD+GVHA VA Sbjct: 4 NYKMTICYDGSRYYGWEHQPDRDTIQGKLENVLTRMCGEFIDVLGAGRTDAGVHARGMVA 63 Query: 63 HFDLV--------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 + RE P + +N YL D I++ + ++FHAR+ A+ + Y Y Sbjct: 64 NAVFDATDKERGGRERTPDEIRDYMNRYL--PDDIAVKEVREASERFHARYKAVGKLYRY 121 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 ++ ++ K D E M+ AA +L G+HD+ +F S +R +D Sbjct: 122 TCYDGPVKPVFQRKYVAVLEKRPDVEKMQQAAAYLEGKHDYKSFCGNPRMKKSTVRVVDK 181 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ G+ I FL +R VG+L VG GK + + L+A++R+ GP A Sbjct: 182 IEITRKGSFIYFDFHGTGFLQNMVRILVGTLLEVGKGKIKPEQIPEILEAKNRQMAGPTA 241 Query: 235 PPEGLYFDSVEY 246 P +GL V+Y Sbjct: 242 PAQGLCLIKVDY 253 >gi|56961964|ref|YP_173686.1| pseudouridylate synthase I [Bacillus clausii KSM-K16] gi|62901228|sp|Q5WLN0|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16] Length = 261 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G+ + G+Q Q ++Q +E+A+ + G V V +GRTD+GVHA Sbjct: 1 MSRMACKLSYDGTAFAGYQVQPGKRTVQSEVERALQEIHKGARVPVVASGRTDAGVHACG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P ALN +L D I + N ++V+ FHAR+ A + Y Y I Sbjct: 61 QVLHFDTELTIAPERWVSALNTHL--PDDIVVTNAAMVEPDFHARYGAQAKEYRYYIQCG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A I ++LD M+ AA+HL+G HDF+ F + + + +RTI H V Sbjct: 119 PFENVFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAANTTVTDKVRTITHVAVQP 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R VG+L +G GK +++++ L + R G AP GL Sbjct: 179 SEEGLLISIRGTGFLYNMVRIIVGTLLEIGTGKRVASEMKVILAGKSRNLAGKTAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 CLYEVDY 245 >gi|16804636|ref|NP_466121.1| tRNA pseudouridine synthase A [Listeria monocytogenes EGD-e] gi|224499270|ref|ZP_03667619.1| tRNA pseudouridine synthase A [Listeria monocytogenes Finland 1988] gi|224503609|ref|ZP_03671916.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-561] gi|254829047|ref|ZP_05233734.1| truA [Listeria monocytogenes FSL N3-165] gi|254830971|ref|ZP_05235626.1| tRNA pseudouridine synthase A [Listeria monocytogenes 10403S] gi|254899951|ref|ZP_05259875.1| tRNA pseudouridine synthase A [Listeria monocytogenes J0161] gi|254912843|ref|ZP_05262855.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818] gi|254937223|ref|ZP_05268920.1| truA [Listeria monocytogenes F6900] gi|255029029|ref|ZP_05300980.1| tRNA pseudouridine synthase A [Listeria monocytogenes LO28] gi|284800516|ref|YP_003412381.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578] gi|284993702|ref|YP_003415470.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923] gi|24212550|sp|Q8Y457|TRUA_LISMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16412086|emb|CAD00676.1| truA [Listeria monocytogenes EGD-e] gi|258601456|gb|EEW14781.1| truA [Listeria monocytogenes FSL N3-165] gi|258609828|gb|EEW22436.1| truA [Listeria monocytogenes F6900] gi|284056078|gb|ADB67019.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578] gi|284059169|gb|ADB70108.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923] gi|293590841|gb|EFF99175.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818] Length = 248 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ +AL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|330721742|gb|EGG99735.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047] Length = 269 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + IEY+GSGY GWQ Q + S ++Q +E A+ + V V AGRTD+GVHA Q Sbjct: 9 TRVALGIEYHGSGYNGWQAQNHESITVQCELESALSKIADAPVRVFCAGRTDAGVHATGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+++ + N +L D+I + V + FHARFSA+ R Y+Y I Sbjct: 69 VVHFDVLKPRTENAWVRGTNTHL--PDSIRVRWAKFVPEDFHARFSAMARRYIYVIENTP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + LD E M++AA +LVG HDF+++R++ CQA S I+T+ H V Sbjct: 127 VHSAIMNKHFSFEDRPLDVERMQLAANYLVGEHDFSSYRTVRCQAKSAIKTVHHLKVERH 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI I + A +FLH +R+ G L +VG GK ++ L A+DR G APP GLY Sbjct: 187 GSLIAIDIYANAFLHHMVRNVAGVLMMVGMGKAEPVWAKQVLDARDRTVGGVTAPPNGLY 246 Query: 241 FDSVEYS 247 V+Y Sbjct: 247 LVGVDYP 253 >gi|302390990|ref|YP_003826810.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501] gi|302203067|gb|ADL11745.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501] Length = 244 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY II Y+G+ Y+G+Q Q + +IQ +E+++ ++T E V AGRTD GVHA Q Sbjct: 1 MRYLKAIIAYDGTNYYGFQHQPDVPTIQDELEESLRILTKEKNKVIVAGRTDRGVHAQNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + A N L + I I + V+ FHAR+ A + Y YRI+ + Sbjct: 61 VINFKTESPIPLENIRFAWNNCL--PNDILIKEVEDVNADFHARYDAEGKIYEYRILNQP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ + I + LD M AA+ L+G +DF++F++ + +RTI +V Sbjct: 119 LPSVFKRNYTYHIKEELDSAAMAEAAECLIGTYDFSSFQASGSNVQTTVRTIQQAEVTQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ R+ FL+ +R VG+L VG G+W + + ++A+DR GP AP +GL Sbjct: 179 DRLVIFRIEGDGFLYNMVRIIVGTLIKVGTGEWEVPRMSRIIEAEDRLAAGPTAPAQGLR 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LIKVKY 244 >gi|307706977|ref|ZP_07643775.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321] gi|307617638|gb|EFN96807.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321] Length = 249 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVVSIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + +E L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIELILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|120554480|ref|YP_958831.1| tRNA pseudouridine synthase A [Marinobacter aquaeolei VT8] gi|120324329|gb|ABM18644.1| tRNA pseudouridine synthase A [Marinobacter aquaeolei VT8] Length = 302 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 127/246 (51%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +I EY+G + GWQ QK S++ + +A V V + AGRTD+GVHA QV Sbjct: 18 RVAIIFEYDGQAFHGWQLQKSGVRSVEAELSRAAARVADHPVDLVCAGRTDAGVHASFQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +N L D IS+ FHARFSAI R Y Y I Sbjct: 78 AHFDTPSVRNLRSWVMGMNTAL--PDDISVHWAGNGQGDFHARFSAIYRRYRYVIYNHPV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++G+ + LD E M A+Q LVG HDF++FR+ CQ+ +P+R ++ V G Sbjct: 136 RPGIQRGQVSWTFRPLDAERMHRASQALVGEHDFSSFRAAGCQSRTPVRFLEQISVTRCG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I V A +FLH +R+ G+L VG+G+ + L+ +DRK G APP GLY Sbjct: 196 EFVVIDVQANAFLHHMVRNIAGALMAVGNGQQPEDWIGDILECRDRKLAGVTAPPYGLYL 255 Query: 242 DSVEYS 247 V Y Sbjct: 256 VDVGYP 261 >gi|114763999|ref|ZP_01443240.1| tRNA pseudouridine synthase A [Pelagibaca bermudensis HTCC2601] gi|114543591|gb|EAU46605.1| tRNA pseudouridine synthase A [Roseovarius sp. HTCC2601] Length = 255 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 114/250 (45%), Positives = 156/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYDGRPFAGWQRQADQPSVQGAIEAALARLEKRDHTIAAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK ++I + V +HARFSA R YL+R++ R+ Sbjct: 61 VAHCDMEKAWDPFRLSEALNFHLK-PAPVAIRACAAVSDDWHARFSAHERRYLFRLLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP LE G+ W + L E MR A HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATLEAGQVWRVMNPLSLEAMRAGAAHLIGQHDFTTFRSTMCQAASPVKTMDEIRIEQT 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D+ AL+A+DR CGP+ PP Sbjct: 180 DTGAGTEFRFHLRARSFLHNQVRSIVGTLERVGAGSWAPEDVRSALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 DGLYLMGVGY 249 >gi|196041154|ref|ZP_03108450.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] gi|196028089|gb|EDX66700.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] Length = 252 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P SL+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYSLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|73667044|ref|YP_303060.1| tRNA pseudouridine synthase A [Ehrlichia canis str. Jake] gi|123773369|sp|Q3YS43|TRUA_EHRCJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72394185|gb|AAZ68462.1| tRNA pseudouridine synthase [Ehrlichia canis str. Jake] Length = 245 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 114/246 (46%), Positives = 159/246 (64%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQRQK+ +SIQ +E+AIF + E V + AGRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSNFIGWQRQKHLSNSIQEILEEAIFKFSRESVTTYVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ ++ A+N +L I +IS+LN+ D +FHARFSA +R YLY+II R Sbjct: 61 VAHFDLTADFDAYVVRNAINYHL-IPHSISVLNVEKTDDEFHARFSAKKRHYLYKIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL ++ RAWL+ LD E M A +++ G HDF++FR+ HCQ+ SP++T+D + Sbjct: 120 SPLTIDYNRAWLVRNPLDVEKMMRAVEYIKGNHDFSSFRARHCQSKSPVKTMDDLKIIHS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I A SFLH Q+R VG+L G + + L+A+DR G APP GLY Sbjct: 180 DQCIDIYFSAISFLHNQVRIIVGTLVECGKNSFPPEYTKDILEAKDRSYAGMTAPPYGLY 239 Query: 241 FDSVEY 246 F V+Y Sbjct: 240 FVKVDY 245 >gi|268590477|ref|ZP_06124698.1| tRNA pseudouridine synthase A [Providencia rettgeri DSM 1131] gi|291314156|gb|EFE54609.1| tRNA pseudouridine synthase A [Providencia rettgeri DSM 1131] Length = 271 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS YFGWQRQ+ S+QG +E+A+ + E + V AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYFGWQRQQEVKSVQGCLEEALSKIAAEPISVFCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ N +L I++ V ++FHARFSA R Y Y I + Sbjct: 69 HFETSAIRKEAAWTMGANTHL--PPDIAVRWCKPVAEEFHARFSATARRYRYVIFNHRYR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G DFT+FR++ CQ+ SP R + H +V+ G+ Sbjct: 127 PAILSSGVTHFHYPLDEKRMHEAAQALLGERDFTSFRAVQCQSKSPWRNVMHVNVSRHGH 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + L+ +DR + A EGLY Sbjct: 187 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQNIDWMAHLLELKDRTKAAATAKAEGLYLV 246 Query: 243 SVEYS 247 SV+Y Sbjct: 247 SVDYP 251 >gi|332201036|gb|EGJ15107.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47901] Length = 249 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFILDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|255526720|ref|ZP_05393623.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|255509607|gb|EET85944.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 249 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 134/251 (53%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M M+I+Y+GS Y GWQ+Q + S+IQ IE + +TGE + V G GRTD+GV Sbjct: 1 MRNLKMLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA VA+F + K L Y + + I + +L ++FHAR++A ++YLY Sbjct: 61 HAENYVANFHTDSILTVEDMLKYL--YEFLPEDIVVKSLRDTSERFHARYNAKSKTYLYT 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + + A+ + ++L+ MR AA+ L G HDF +F S+ S +RTI++ Sbjct: 119 INNNKFRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTKSTVRTINYI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +I I V SFL +R VG+L VG G +D+EK L + R E GP+A Sbjct: 179 SITEEHGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPMAA 238 Query: 236 PEGLYFDSVEY 246 +GL ++Y Sbjct: 239 AKGLCLKDIQY 249 >gi|229009651|ref|ZP_04166877.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048] gi|229131150|ref|ZP_04260062.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196] gi|229165130|ref|ZP_04292925.1| tRNA pseudouridine synthase A [Bacillus cereus AH621] gi|228618393|gb|EEK75423.1| tRNA pseudouridine synthase A [Bacillus cereus AH621] gi|228652363|gb|EEL08288.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196] gi|228751673|gb|EEM01473.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048] Length = 252 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|253999257|ref|YP_003051320.1| tRNA pseudouridine synthase A [Methylovorus sp. SIP3-4] gi|253985936|gb|ACT50793.1| tRNA pseudouridine synthase A [Methylovorus sp. SIP3-4] Length = 261 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ + GWQ Q G +Q ++E+ + + V V AGRTD+GVHAL QV Sbjct: 1 MRVALGLEYDGAHFCGWQSQPGGCGVQDALERELARMACHPVRVIAAGRTDTGVHALAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E + +NA L ++ +L VD +FHARFSA +R Y Y + + Sbjct: 61 VHFETTTERPLNAWVRGVNAGL--PSSVRVLWAQQVDDEFHARFSARQRYYQYILFDQAV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+ +SLD + M AA HL+G HDF+ FR+ CQA SPIRT+ +V G Sbjct: 119 APAILAGKVGWFHQSLDVDAMAEAAAHLIGEHDFSAFRAAECQAKSPIRTLQQAEVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I +FLH Q+R+ VG+L VG G +++ LQ+ DR+ P P+GLY Sbjct: 179 QAILFEFSGNAFLHHQVRNMVGALVYVGKGSQPPAFIQQLLQSHDRRLAPPTFSPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 SGVGYE 244 >gi|257886188|ref|ZP_05665841.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|257822044|gb|EEV49174.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] Length = 247 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FH+R++A+ + Y Y + Sbjct: 61 QVANFKTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLDAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|255025629|ref|ZP_05297615.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-003] Length = 248 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ KAL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|15901439|ref|NP_346043.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4] gi|111656856|ref|ZP_01407696.1| hypothetical protein SpneT_02001886 [Streptococcus pneumoniae TIGR4] gi|149013277|ref|ZP_01834035.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75] gi|168486863|ref|ZP_02711371.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00] gi|225859353|ref|YP_002740863.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585] gi|303253960|ref|ZP_07340080.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455] gi|303258528|ref|ZP_07344508.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293] gi|303262617|ref|ZP_07348557.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292] gi|303263556|ref|ZP_07349478.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397] gi|303267576|ref|ZP_07353421.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457] gi|303269928|ref|ZP_07355667.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458] gi|25453312|sp|Q97PL0|TRUA_STRPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764867|sp|C1C8I7|TRUA_STRP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14973090|gb|AAK75683.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4] gi|147762942|gb|EDK69888.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75] gi|183570198|gb|EDT90726.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00] gi|225721425|gb|ACO17279.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585] gi|301794601|emb|CBW37047.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV104] gi|301802309|emb|CBW35063.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV200] gi|302599048|gb|EFL66074.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455] gi|302636173|gb|EFL66668.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292] gi|302640029|gb|EFL70484.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293] gi|302640531|gb|EFL70939.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458] gi|302642899|gb|EFL73201.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457] gi|302646594|gb|EFL76819.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397] Length = 249 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|254560755|ref|YP_003067850.1| tRNA pseudouridine synthase A [Methylobacterium extorquens DM4] gi|254268033|emb|CAX23904.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens DM4] Length = 250 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 110/250 (44%), Positives = 156/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ DV Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCNRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|322517723|ref|ZP_08070585.1| tRNA pseudouridine synthase A [Streptococcus vestibularis ATCC 49124] gi|322123654|gb|EFX95247.1| tRNA pseudouridine synthase A [Streptococcus vestibularis ATCC 49124] Length = 249 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L M+ AA LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESCDRNLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|83591242|ref|YP_431251.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073] gi|123766692|sp|Q2RFT1|TRUA_MOOTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83574156|gb|ABC20708.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073] Length = 246 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 118/248 (47%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + + Y+GS Y GWQ Q +G ++QG + A+ +TGE + AGRTD+GVHA Sbjct: 1 MPCLKITLAYDGSNYAGWQVQPEAHGPTVQGEVAAALKRLTGEEITPVAAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F ALN+ L I+ L V FHAR+ A R+ Y Y I Sbjct: 61 GQVISFSTRARIPVERWPLALNSVL--PADIAALEAVEVAPDFHARYCAKRKWYRYTIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P + +W + + LD M AA +L G HDF +F + R + V+ Sbjct: 119 NRVPDVFCRRYSWHLRQPLDVIAMARAAAYLQGCHDFRSFCAAGSPVRHFERQVQQASVS 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I V+A FL+ +R VG+L +G + + L A+ R++ GP AP G Sbjct: 179 QNGPFIYFDVIADGFLYHMVRIMVGTLVEIGRRRLVPEAIPAILAARSREKAGPTAPARG 238 Query: 239 LYFDSVEY 246 L + VEY Sbjct: 239 LCLERVEY 246 >gi|293604664|ref|ZP_06687064.1| tRNA pseudouridine synthase A [Achromobacter piechaudii ATCC 43553] gi|292816833|gb|EFF75914.1| tRNA pseudouridine synthase A [Achromobacter piechaudii ATCC 43553] Length = 270 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q + ++Q ++E A+ G + V AGRTD+GVH Sbjct: 2 MSRVALGLAYDGSAWQGWQTQPHRQTVQDTLESALARFCGVQDPVPTICAGRTDTGVHGA 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L ++S+ V +FHARFSA R+Y+Y + Sbjct: 62 MQVVHLDTSLDRRMESWVRGVNAFL--PPSVSVQWAQEVSDEFHARFSARARTYVYLLWR 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA ++LD + MR AAQ LVG HDF++FRS CQA P+R + D+ Sbjct: 120 GRVRPALWAGRAGWCFQTLDVDAMRAAAQALVGEHDFSSFRSSQCQAKHPVRHMHRLDIA 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L VG G+ + + + L +DR P P+G Sbjct: 180 ERGPFLVFTLKANAFLHHMVRNIMGALLQVGQGRESVDWMAQLLSLRDRTRGAPTFAPDG 239 Query: 239 LYFDSVEYS 247 LY S++Y Sbjct: 240 LYLSSIDYP 248 >gi|229028278|ref|ZP_04184414.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271] gi|228733042|gb|EEL83888.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271] Length = 250 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + IS+ ++ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISVTDVEEVPDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPYILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|254487927|ref|ZP_05101132.1| tRNA pseudouridine synthase A [Roseobacter sp. GAI101] gi|214044796|gb|EEB85434.1| tRNA pseudouridine synthase A [Roseobacter sp. GAI101] Length = 256 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 117/251 (46%), Positives = 166/251 (66%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEYNG+ Y GWQRQ +++QG IE A+ V + AGRTD GVHAL Q Sbjct: 1 MYRYALKIEYNGAPYVGWQRQIGLATVQGVIEDALAKVEPRAHKIAAAGRTDGGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN ++K + +++++ + V +FHARFSA R Y +RI+ R+ Sbjct: 61 VAHCDMERDWDPFRLSEALNFHMK-PNPVAVVDCAPVGPEFHARFSAQERRYQFRILVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W + K LD + MR A+HL+G+HDFTTFRS CQA++P++T+D D+++ Sbjct: 120 APATHQAGLVWQVKKPLDLDAMRAGARHLIGQHDFTTFRSTICQAATPVKTVDRIDISAV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L + + V ARSFLH Q+RSFVG+L+ VG G T D++ A+DR+ CGP++PP Sbjct: 180 ETLGGLEVHLDVRARSFLHNQVRSFVGTLERVGAGSLTPDDVKVMRDARDRQACGPVSPP 239 Query: 237 EGLYFDSVEYS 247 GLY V+Y Sbjct: 240 HGLYLAHVDYP 250 >gi|163851061|ref|YP_001639104.1| tRNA pseudouridine synthase A [Methylobacterium extorquens PA1] gi|238687375|sp|A9W377|TRUA_METEP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163662666|gb|ABY30033.1| tRNA pseudouridine synthase A [Methylobacterium extorquens PA1] Length = 250 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 110/251 (43%), Positives = 155/251 (61%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNARLR-PQPVAILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ DV Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEYS 247 GL F V+Y Sbjct: 240 CGLTFVGVDYP 250 >gi|116628993|ref|YP_814165.1| tRNA pseudouridine synthase A [Lactobacillus gasseri ATCC 33323] gi|238853452|ref|ZP_04643830.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 202-4] gi|116094575|gb|ABJ59727.1| Pseudouridylate synthase [Lactobacillus gasseri ATCC 33323] gi|238833892|gb|EEQ26151.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 202-4] Length = 264 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 131/253 (51%), Gaps = 8/253 (3%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHA 57 M+ RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Sbjct: 1 MMTTRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHA 60 Query: 58 LRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD +E + ALNA + + IVD FH ++S + Y Y + Sbjct: 61 KGQVIHFDYPGKEIPAKNMMLALNALM--PIDTVFFDSEIVDSDFHVQYSTKGKWYRYIV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + + Sbjct: 119 DQHRFTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVN 178 Query: 177 VNSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + S + I + FL+ +R VG+L +G+ K D+ + L A+DR+E A Sbjct: 179 ITSDPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTA 238 Query: 235 PPEGLYFDSVEYS 247 P GLY V Y Sbjct: 239 PASGLYLQHVFYE 251 >gi|270293156|ref|ZP_06199367.1| tRNA pseudouridine synthase A [Streptococcus sp. M143] gi|270279135|gb|EFA24981.1| tRNA pseudouridine synthase A [Streptococcus sp. M143] Length = 249 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ V VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAVTVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QAIHFDLPYQMNEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVEQMQEAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLSV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DKTGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|310823108|ref|YP_003955466.1| tRNA pseudouridine synthase a [Stigmatella aurantiaca DW4/3-1] gi|309396180|gb|ADO73639.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 265 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+GS Y GWQ Q+NG S+Q + +A+ + G V V AGRTDSGVHA Q Sbjct: 1 MPRLKLTIEYDGSRYVGWQVQRNGRSVQAELGEALGRLLGGDVEVVAAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD R+ + LN L + I+++ V F R + + Y YR+ Sbjct: 61 VVCFDTERQLPLKAYHRGLNGLL--PEDIAVVRAEEVSAAFDPRRWSRGKRYRYRVSNLP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 + L + W I L E M AA L+GRHD++ FR+ CQA+ +R + V + Sbjct: 119 SRSPLRRHTHWEIYAPLQVEAMARAATSLLGRHDYSAFRASDCQAAHAVREVRRLSVEGT 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + V +FL +R+ VG+L VG G+ + + L + DR GP APP GL Sbjct: 179 PGDAVAFVVEGTAFLKHMVRNLVGTLVEVGKGRRPEAWVAEVLASGDRTLAGPTAPPHGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 VLEEVFY 245 >gi|320548017|ref|ZP_08042298.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812] gi|320447363|gb|EFW88125.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812] Length = 249 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + + +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGGLFAGFQRQPSERSVQEELEKTLQKLNSGTPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + +V FH+R++ ++Y + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVELVSDDFHSRYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI D+ Sbjct: 119 RPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++++R GP A Sbjct: 179 DEKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYD 248 >gi|322388332|ref|ZP_08061936.1| tRNA pseudouridine synthase A [Streptococcus infantis ATCC 700779] gi|321141004|gb|EFX36505.1| tRNA pseudouridine synthase A [Streptococcus infantis ATCC 700779] Length = 249 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ + +HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTKLNKGQAITIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEVVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTAAGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|313499900|gb|ADR61266.1| TruA [Pseudomonas putida BIRD-1] Length = 284 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 18 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS++ + FHARF A R Y Y I Sbjct: 78 VHFDTRAVRDERAWTMGTNFNL--PHDISVVWSRPMPADFHARFKACARRYRYVIYNDPI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD + M AAQ L+G HDF+ FR+ CQA SPI+ I H V G Sbjct: 136 RPAHLAEEVTWNHRPLDVDRMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G A P GLY Sbjct: 196 QMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYL 255 Query: 242 DSVEYS 247 VEY Sbjct: 256 VQVEYP 261 >gi|311694720|gb|ADP97593.1| tRNA pseudouridine synthase A [marine bacterium HP15] Length = 302 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 124/246 (50%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + EY+G G+ GWQ QK S++ + A+ V V + AGRTD+GVHA Q+ Sbjct: 18 RVALAFEYDGRGFHGWQLQKSGVRSVEAELTAAVAKVANHAVDLVCAGRTDAGVHASYQI 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +N L D IS+ FHARFSA R Y Y I Sbjct: 78 AHFDTPSVRNLRSWVMGINTAL--PDDISVHWAGNGVGDFHARFSATYRRYRYIIYNHPV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++G+ + LD + M AAQ L G HDF++FR+ CQ+ +PIR ++ V Sbjct: 136 RPGIQRGQVSWTFRPLDADRMHRAAQALAGEHDFSSFRAAGCQSRTPIRFLERISVTRKR 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V A +FLH +R+ G+L VG GK + + L A+DR G APP GLY Sbjct: 196 DFVVIDVQANAFLHHMVRNIAGALMAVGSGKQRPEWIHEILVARDRTAAGVTAPPHGLYL 255 Query: 242 DSVEYS 247 V Y Sbjct: 256 VDVGYP 261 >gi|328951883|ref|YP_004369217.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109] gi|328452207|gb|AEB08036.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109] Length = 267 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 130/245 (53%), Gaps = 3/245 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 C+ +EY+G+ Y GWQRQ N +IQ +E + +TG+++ +H +GRTD+GVHAL QVAH Sbjct: 25 ICLTLEYDGTAYHGWQRQANALTIQEVVETCLARLTGQVIRLHSSGRTDAGVHALGQVAH 84 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + LN+ L ++IL + FHAR+SA ++Y YRI+ R Sbjct: 85 FLTTSSLPLSAFREGLNSLL--PRDLAILKVCDAPAGFHARYSATAKTYEYRILNRPVRS 142 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-GN 182 + W + + LD +R AA +++G DF F++ + R + G Sbjct: 143 PVHCNYCWWLARPLDQGLLRQAAGYILGEQDFAAFQASGGSVKTTTRKVMAASWEEKPGG 202 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ A FL +R+ VG++ VG GK + DL++ L A+DR++ GP AP GLY Sbjct: 203 WRIFQITANGFLRGMVRALVGTMVEVGWGKRSPGDLKRLLAARDRRQAGPTAPAAGLYLV 262 Query: 243 SVEYS 247 V Y Sbjct: 263 EVRYD 267 >gi|293364991|ref|ZP_06611708.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|307703239|ref|ZP_07640185.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|291316441|gb|EFE56877.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|307623314|gb|EFO02305.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] Length = 249 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAIAVHGAGRTDSGVHALE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLSV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|306820983|ref|ZP_07454602.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550924|gb|EFM38896.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 245 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 134/248 (54%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ Y GWQRQKN SIQ IE AI L+ E + V +GRTD+GVHAL Q Sbjct: 1 MRNILLEISYDGTNYSGWQRQKNAISIQEKIEDAISLICNEEINVIASGRTDAGVHALSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F KA+N L D I IL+ VD+ F+ARFSA +++Y+Y I+ R+ Sbjct: 61 IANFSTSSSIDAKKFAKAINTKL--PDDIRILSSKEVDEDFNARFSAKKKTYIYHILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNS 179 + I + LD E M+ + L+G HDFT+F + + I+TI D+ Sbjct: 119 IKNPFWDKYSMHINRKLDLELMKSNSNMLIGTHDFTSFYTYEENNPKNTIKTIYSSDIVK 178 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +++ + FL+ +R VG+L +G + D+ + L +DR + G A +G Sbjct: 179 IYEDILTFSITGDGFLYNMVRIIVGTLIEIGLHQKN-DDISQILMYKDRIKAGATAKAKG 237 Query: 239 LYFDSVEY 246 L+ +VEY Sbjct: 238 LFLKNVEY 245 >gi|15616818|ref|NP_240030.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11135207|sp|P57295|TRUA_BUCAI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25292033|pir||D84953 pseudouridylate synthase (EC 4.2.1.70) [imported] - Buchnera sp. (strain APS) gi|10038881|dbj|BAB12916.1| pseudouridylate synthase I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 266 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKILPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMNFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEYS 247 VEY Sbjct: 247 VEYP 250 >gi|323141117|ref|ZP_08076020.1| tRNA pseudouridine synthase A [Phascolarctobacterium sp. YIT 12067] gi|322414383|gb|EFY05199.1| tRNA pseudouridine synthase A [Phascolarctobacterium sp. YIT 12067] Length = 250 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++ Y+GS Y G+Q+QKN ++Q +E+A+ ++ GE VV G+GRTD+GVHAL Q Sbjct: 1 MRTIKLVVAYDGSAYHGFQKQKNVQTVQNVLEEALTMLCGEKVVTAGSGRTDTGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F L +A + L + I +++ + + FHARFSA ++Y Y+++ + Sbjct: 61 TVTFTTNGRIPCANLVRAAASLL--PEDIVVVSAEEMPEGFHARFSARWKTYHYKLLVNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AW + + L+ + M AA+ L+G HDF+ FRS +SPI+TI Sbjct: 119 HVNPFMVRYAWQLRQQLEVKAMNEAAELLLGTHDFSAFRSSGSVDTSPIKTIFAAKWQQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I R+ FL+ +R+ V S+ VG GK T D L AQ + AP +GLY Sbjct: 179 GEEILFRISGDGFLYHMVRNIVWSMVQVGMGKRTVQDFAAELTAQRCEFLNEPAPAQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAEVGY 244 >gi|229003158|ref|ZP_04161004.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock1-4] gi|228758121|gb|EEM07320.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock1-4] Length = 252 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHARG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I + + + FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWMNALNTML--PDDIVVRQVEKKIEDFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ E++R A + +G HDFT+F S +RTI D+ Sbjct: 124 KNADVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSTKTDKKDKVRTIYEIDLME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L+ QDR+ G + P GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKMVPDSIPEILKKQDRRFAGKMVPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|149203831|ref|ZP_01880800.1| tRNA pseudouridine synthase A [Roseovarius sp. TM1035] gi|149142948|gb|EDM30990.1| tRNA pseudouridine synthase A [Roseovarius sp. TM1035] Length = 258 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 119/251 (47%), Positives = 163/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG++E A+ + + AGRTD+GVHA+ Q Sbjct: 1 MPRYALRIEYDGAPFAGWQRQVDHPSVQGAVEAALARIEPGSHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW L +ALN +LK ++I V + +HARFSA R YL+R+++R+ Sbjct: 61 VAHCDLTREWGTFRLSEALNYHLK-PLPVAITACVRVAEDWHARFSANERRYLFRVMSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP+ L++GR W + LD + MR AQHL+G HDFTTFRS CQA+SPI+T+D +++ Sbjct: 120 APVTLDRGRVWHVRPKLDIDAMRAGAQHLIGMHDFTTFRSTICQAASPIKTLDAIEISEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I R+ ARSFLH Q+RS VG+L+ VG G W ++ AL A+DR CGP+ PP Sbjct: 180 ESAMGPEIHFRLRARSFLHNQVRSIVGTLERVGAGSWHPDEVRAALNARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLAGVSYP 250 >gi|149021302|ref|ZP_01835548.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72] gi|168491513|ref|ZP_02715656.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04] gi|225861429|ref|YP_002742938.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Taiwan19F-14] gi|298229625|ref|ZP_06963306.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254115|ref|ZP_06977701.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503335|ref|YP_003725275.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae TCH8431/19A] gi|254764872|sp|C1CSL6|TRUA_STRZT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147930403|gb|EDK81387.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72] gi|183574268|gb|EDT94796.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04] gi|225728219|gb|ACO24070.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Taiwan19F-14] gi|298238930|gb|ADI70061.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae TCH8431/19A] gi|327389783|gb|EGE88128.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04375] gi|332073932|gb|EGI84410.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41301] Length = 249 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVAADFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|114567807|ref|YP_754961.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317314|sp|Q0AUL4|TRUA_SYNWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114338742|gb|ABI69590.1| Pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 249 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++EY+GS Y G+Q QKN +++Q +EKAI+ ++GE + AGRTD+GVHA Q Sbjct: 1 MSRIKLLLEYDGSNYHGFQLQKNANTVQAELEKAIYRLSGERATIVCAGRTDAGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD ALN+ L + I +L +F+ RF A+++ Y Y I ++ Sbjct: 61 VVAFDSCSTIPGDRWAYALNSQL--PEDIQVLESQETRAEFNPRFDALKKCYGYLIYRQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + L E M+ AA+ L GR +F +F + A + R I H ++ Sbjct: 119 KKATFYRHYALCNTEPLKLEAMQEAAEILKGRQNFRSFCASGSSARTFEREIFHCRLSEK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A FL+ +R G+L VG GK+ L + + +QDR GP APP+GLY Sbjct: 179 GPCLLLHIAADGFLYNMVRIITGTLLEVGKGKYPPQHLREIIASQDRTRAGPTAPPQGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LLQVFYP 245 >gi|52144819|ref|YP_082010.1| tRNA pseudouridine synthase A [Bacillus cereus E33L] gi|62901422|sp|Q63GF1|TRUA2_BACCZ RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|51978288|gb|AAU19838.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A) [Bacillus cereus E33L] Length = 245 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|42518460|ref|NP_964390.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii NCC 533] gi|51316717|sp|Q74L59|TRUA_LACJO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41582745|gb|AAS08356.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii NCC 533] Length = 263 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNQRTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + IVD+ FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNALM--PIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 121 RFTDPFNRFYTGHYPYPLDISLMKQAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITP 180 Query: 180 FGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP Sbjct: 181 DPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLQQVFYE 250 >gi|171777516|ref|ZP_02919238.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283226|gb|EDT48650.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + + +G+ V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGRLFAGFQRQPSERSVQEELEKTLQRLNSGQPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + +V FH+R++ ++Y + + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVELVSDDFHSRYNKHSKTYEFLVDSG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI D+ Sbjct: 119 RPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L +++R GP A Sbjct: 179 DEKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLASKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYD 248 >gi|307709543|ref|ZP_07645997.1| tRNA pseudouridine synthase A [Streptococcus mitis SK564] gi|307619674|gb|EFN98796.1| tRNA pseudouridine synthase A [Streptococcus mitis SK564] Length = 249 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLAYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|291530837|emb|CBK96422.1| pseudouridylate synthase I [Eubacterium siraeum 70/3] Length = 250 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 123/249 (49%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA Sbjct: 1 MRNLKVTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + K NA L I+ L+ + FHARF + + Y+YRI T Sbjct: 61 VFNVKTNCPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYRIYTGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDVN 178 A P D E MR AA+ +VG HDF +F + + +RT+ DV Sbjct: 119 VRDVFSADTALHYPYKPDIEKMRKAARLIVGEHDFASFCKAEAKEHLLTTVRTVYSIDVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ +EI+V FLH +R VG+L + +GK T D+ AL DR+ G PP G Sbjct: 179 QTGDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPPCG 238 Query: 239 LYFDSVEYS 247 LY + V Y Sbjct: 239 LYLNKVFYE 247 >gi|293572050|ref|ZP_06683062.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|291607912|gb|EFF37222.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] Length = 246 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNSEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTSAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|196040200|ref|ZP_03107502.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] gi|196029055|gb|EDX67660.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] Length = 245 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN +L + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQHL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|322377359|ref|ZP_08051850.1| tRNA pseudouridine synthase A [Streptococcus sp. M334] gi|321281559|gb|EFX58568.1| tRNA pseudouridine synthase A [Streptococcus sp. M334] Length = 249 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMSRYYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLKV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|225387194|ref|ZP_03756958.1| hypothetical protein CLOSTASPAR_00946 [Clostridium asparagiforme DSM 15981] gi|225046673|gb|EEG56919.1| hypothetical protein CLOSTASPAR_00946 [Clostridium asparagiforme DSM 15981] Length = 259 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q N +I+ + KA+ + E + V GA RTD+GVHA Sbjct: 7 MRRIRLVVAYDGTNYHGWQYQPNAVTIEEVLNKALTELLREPIAVIGASRTDAGVHAQGN 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C A+N L + I + + V +H R ++Y Y+I+ R+ Sbjct: 67 VAVFDTKNRMAADKICLAVNQRL--PEDIRVQSSEEVATDWHPRKRRCVKTYEYKILNRR 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ + LD E MR AA+ ++G HDF +F S Q + +RT+ + Sbjct: 125 IEMPDKRLYTYHCYYDLDLEKMRQAAEFILGEHDFKSFCSAKTQVTDTVRTVYDLKLERD 184 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IR+ FL+ +R G+L G G + + L A+DR++ GP AP +GL Sbjct: 185 QEDVITIRITGSGFLYNMVRIIAGTLLWAGTGLIRPEAVGEILAAEDRRKAGPTAPAKGL 244 Query: 240 YFDSVEYS 247 + Y Sbjct: 245 TLIRMHYP 252 >gi|310816231|ref|YP_003964195.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare Y25] gi|308754966|gb|ADO42895.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare Y25] Length = 255 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 112/251 (44%), Positives = 157/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ S+QG+IE A+ + + AGRTD+GVH Q Sbjct: 1 MPRYALLVEYDGRPFSGWQRQSELPSVQGAIEAALAKLEPRDHTIAAAGRTDTGVHGTGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++W P L +ALN +L+ ++IL + V +HARFSA R Y++R+++R+ Sbjct: 61 VAHCDMDKDWDPFRLSEALNHHLR-PAPVAILRAARVADDWHARFSAYERRYIFRLLSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 APL +E G+ W + +LD + MR A HL+G HDFTTFRS CQA SP++TID + Sbjct: 120 APLTVENGQFWRVGHALDADLMRAGAAHLIGLHDFTTFRSSICQAKSPVKTIDEISITEI 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W + + L A+DR CGP+ PP Sbjct: 180 PRHDGTEFRFFLRARSFLHNQVRSIVGTLERVGAGAWPPEKVAEVLAARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY VEY Sbjct: 240 QGLYLAGVEYP 250 >gi|49083216|gb|AAT50973.1| PA3114 [synthetic construct] Length = 286 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ S+Q ++E+A V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERASSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PADISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + G Sbjct: 137 RPAHLAEEVTWNHRPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLLEHG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P GLY Sbjct: 197 RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYL 256 Query: 242 DSVEYS 247 VEY Sbjct: 257 VRVEYP 262 >gi|118476179|ref|YP_893330.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|228925681|ref|ZP_04088768.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931917|ref|ZP_04094811.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944241|ref|ZP_04106617.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089549|ref|ZP_04220816.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42] gi|229120089|ref|ZP_04249341.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201] gi|118415404|gb|ABK83823.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|228663327|gb|EEL18915.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201] gi|228693765|gb|EEL47461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42] gi|228815392|gb|EEM61637.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827702|gb|EEM73442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833956|gb|EEM79506.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 250 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|148548973|ref|YP_001269075.1| tRNA pseudouridine synthase A [Pseudomonas putida F1] gi|148513031|gb|ABQ79891.1| tRNA pseudouridine synthase A [Pseudomonas putida F1] Length = 332 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 66 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 125 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS++ + FHARF A R Y Y I Sbjct: 126 VHFDTRAVRDERAWTMGTNFNL--PHDISVVWSRPMPADFHARFKACARRYRYVIYNDPI 183 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD + M AAQ L+G HDF+ FR+ CQA SPI+ I H V G Sbjct: 184 RPAHLAEEVTWNHRPLDVDRMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHG 243 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G A P GLY Sbjct: 244 QMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYL 303 Query: 242 DSVEYS 247 VEY Sbjct: 304 VQVEYP 309 >gi|258646072|ref|ZP_05733541.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] gi|260403447|gb|EEW96994.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] Length = 246 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y I++Y+G+ Y GWQ+QK +IQG +EK + +TGE V V GAGRTD+GVH+L Q Sbjct: 1 MNYRCIVQYDGTRYEGWQKQKRTEETIQGKLEKTLRKITGEEVQVIGAGRTDAGVHSLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F L W L ALN L D I++ ++ +++FH+RFS + ++Y YRI T Sbjct: 61 VVNFHLKGRWKAEELETALNGDL--PDDIALKHMETAEERFHSRFSTLEKTYRYRIRTST 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ W KSLD E M+ AA L+G +DFT+F S +R I ++ Sbjct: 119 EKNVFERRFVWQYGKSLDIEAMKKAAAFLIGTYDFTSFCGNKKMKKSAVRCISGIEMKEI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I FL +R VG+L VG+GK + + L+++ R++ G APP+GL Sbjct: 179 KGELQIDFTGDGFLQGMVRILVGTLVEVGEGKRKAESIPAILESKSREKAGFTAPPQGLI 238 Query: 241 FDSVEYS 247 SV Y Sbjct: 239 LVSVRYE 245 >gi|323126548|gb|ADX23845.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 249 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + + G+ V +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASGQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + D I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVENKVRTITEATLVQ 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|30248700|ref|NP_840770.1| tRNA pseudouridine synthase [Nitrosomonas europaea ATCC 19718] gi|42559793|sp|Q820P8|TRUA_NITEU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|30180295|emb|CAD84602.1| tRNA pseudouridine synthase [Nitrosomonas europaea ATCC 19718] Length = 272 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G GY GWQ+Q S+Q +E A+ V G + V AGRTD+GVHAL QV Sbjct: 12 VKIVLALEYDGRGYCGWQKQPGCLSVQSRLESALSGVAGRQIQVVAAGRTDAGVHALCQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H + + NA L ISIL S V FHARFSA R+YLY +++R A Sbjct: 72 VHLETCVRRPLNAWIRGTNALL--PGDISILEASEVSDDFHARFSATERTYLYYLLSRPA 129 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G+ + LD E M++AA+ L+G+HDF+ FRS CQ+ + IR + +++ Sbjct: 130 RPGIHHGKIGWVHYPLDLEKMQMAAKLLIGKHDFSAFRSSECQSRTAIRQLTRLNISQHQ 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L A +FLH +R+ +G L +G GK+ + L+ +DR P P+GLY Sbjct: 190 QLFVFEFCANAFLHHMVRNILGGLVYIGRGKYPPEWMRILLEKRDRTLAAPTFSPDGLYL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 SGVRYD 255 >gi|217966203|ref|YP_002351881.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23] gi|254789639|sp|B8DB42|TRUA_LISMH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217335473|gb|ACK41267.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23] gi|307572187|emb|CAR85366.1| tRNA pseudouridine synthase A [Listeria monocytogenes L99] Length = 248 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRDFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ KAL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|148653728|ref|YP_001280821.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1] gi|148572812|gb|ABQ94871.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1] Length = 302 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + +E+NG+ Y GWQRQ+ +Q +E+ + + E + V AGRTD+GVH +AH Sbjct: 39 YALGVEFNGANYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDAGVHGGNMLAH 98 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + + N+ L D I+I + + FHARF AI R Y Y + + Sbjct: 99 FTTSAKRGVYNWLRGANSLL--PDDIAIRWIQPMPDTFHARFGAIARRYRYITLNQPQRP 156 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ I + LD M+ AA+H+VG HDF++FR+ CQ+ P+R I H + G Sbjct: 157 AVLNHLVTHIHEPLDLALMQQAAEHIVGTHDFSSFRAAACQSKQPVRNIHHAKLFKHGEF 216 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G G+ D + LQA+DR P APP+GLYF + Sbjct: 217 IVFDIQADGFLHHMVRNLMGTLFAIGKGELQPEDYLRILQAKDRTIAPPTAPPDGLYFIN 276 Query: 244 VEYS 247 Y Sbjct: 277 AYYP 280 >gi|311111209|ref|ZP_07712606.1| tRNA pseudouridine synthase A [Lactobacillus gasseri MV-22] gi|311066363|gb|EFQ46703.1| tRNA pseudouridine synthase A [Lactobacillus gasseri MV-22] Length = 263 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + + IVD FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNALM--PIDTVFFDSEIVDSDFHVQYSTKGKWYRYIVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ S Sbjct: 121 RFTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITS 180 Query: 180 FGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L A+DR+E AP Sbjct: 181 DPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLQHVFYE 250 >gi|119897336|ref|YP_932549.1| tRNA pseudouridine synthase A [Azoarcus sp. BH72] gi|119669749|emb|CAL93662.1| pseudouridine synthase A [Azoarcus sp. BH72] Length = 265 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 127/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY G + GWQ Q++G ++Q ++E A+ + GE V +H AGRTD+GVHA Q Sbjct: 1 MVRLALGVEYAGDRFEGWQSQRHGRTVQDALEAALSRIAGEAVKLHCAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + +N +L +++ VD FHARF A R Y Y + Sbjct: 61 VAHFDTAAVRPLSAWIRGVNTHL--PAGVAVRWAVEVDDAFHARFLAYERRYRYVLFNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL GR LD M AA+ LVG DF+ FR+ CQA +P+R + V Sbjct: 119 TRPALLAGRVGWFHLPLDEGAMAEAARCLVGMQDFSAFRAAECQAKTPVRDMREVRVQRS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + A FLH IR+ VG+L VG G++ L + L +DR P P+GLY Sbjct: 179 GDYLIFDFRADGFLHHMIRNLVGALVYVGKGRYPPGWLAEVLAGRDRSRAAPTFAPDGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LCGVSYP 245 >gi|170720741|ref|YP_001748429.1| tRNA pseudouridine synthase A [Pseudomonas putida W619] gi|169758744|gb|ACA72060.1| tRNA pseudouridine synthase A [Pseudomonas putida W619] Length = 284 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH Q Sbjct: 17 TRIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSKVANEPITVVCAGRTDAGVHGCGQ 76 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD N L IS++ + FHARF A R Y Y I Sbjct: 77 IVHFDTRANRDERAWTLGTNFNL--PHDISVVWSRPMPADFHARFKATARRYRYVIYNDP 134 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H V Sbjct: 135 IRPAHLAEEVTWNHRPLDVERMADAAQFLLGTHDFSAFRASQCQAKSPIKHIHHLRVTRH 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I + V A +FLH +R+ G L +G G+ + + L+ ++R+E G A P GLY Sbjct: 195 GQMIVLDVRATAFLHHMVRNIAGVLMTIGAGERPAGWAREVLEGRNRREGGVTAHPYGLY 254 Query: 241 FDSVEYS 247 VEY Sbjct: 255 LVQVEYP 261 >gi|228983685|ref|ZP_04143885.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776037|gb|EEM24403.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 250 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|311105424|ref|YP_003978277.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans A8] gi|310760113|gb|ADP15562.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans A8] Length = 269 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q + ++Q ++E A+ G V AGRTD+GVH Sbjct: 1 MSRVALGLAYDGSAWQGWQTQPHRQTVQDTLEAALGSFCGVKGPVATICAGRTDTGVHGA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L +IS+ V +FHARFSA R+Y+Y + Sbjct: 61 MQVVHLDTELDRRMESWVRGVNAFL--PSSISVQWAQPVSDEFHARFSARARTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA + LD + MR AA L+G HDF++FRS CQA P+R + D++ Sbjct: 119 GRVRPALWAGRAGWCFQPLDVDAMRTAANALLGEHDFSSFRSSQCQAKHPVRHLYRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L +G G+ + + L +DRK P P+G Sbjct: 179 ERGPFLVFTLKANAFLHHMVRNIMGALLQIGQGREPVDWMAQLLSWRDRKLGAPTFAPDG 238 Query: 239 LYFDSVEYS 247 LY +++Y Sbjct: 239 LYLSAIDYP 247 >gi|227356152|ref|ZP_03840541.1| tRNA pseudouridine synthase A [Proteus mirabilis ATCC 29906] gi|227163616|gb|EEI48532.1| tRNA pseudouridine synthase A [Proteus mirabilis ATCC 29906] Length = 289 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 27 KIALGIEYDGSHYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQVV 86 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N +L I++ + V FHARFSA R Y Y I + Sbjct: 87 HFETTAHRKDAAWTMGVNTHL--PQDIAVRWVKTVANDFHARFSATARRYRYVIFNHRYR 144 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G+ Sbjct: 145 PAILSSGVTHFHYPLDAQRMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHVNVSRYGD 204 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 205 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQAITWMAELLALKDRTKAAATAKANGLYLV 264 Query: 243 SVEYS 247 SV+Y Sbjct: 265 SVDYP 269 >gi|148997657|ref|ZP_01825221.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70] gi|168575203|ref|ZP_02721166.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016] gi|194397044|ref|YP_002038227.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54] gi|307068239|ref|YP_003877205.1| pseudouridylate synthase [Streptococcus pneumoniae AP200] gi|238690845|sp|B5E6N8|TRUA_STRP4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147756156|gb|EDK63198.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70] gi|183578806|gb|EDT99334.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016] gi|194356711|gb|ACF55159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54] gi|306409776|gb|ADM85203.1| Pseudouridylate synthase [Streptococcus pneumoniae AP200] gi|332199640|gb|EGJ13715.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41317] Length = 249 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFILDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|168493506|ref|ZP_02717649.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC3059-06] gi|183576362|gb|EDT96890.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC3059-06] Length = 249 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E MR A + L G HDFT F + IRTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLTV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEICYE 248 >gi|329666723|gb|AEB92671.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii DPC 6026] Length = 263 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + IVD+ FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNALM--PIDTVFFESEIVDEDFHVQYSTKGKWYRYIVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 121 RFTDPFNRFYTGHYPYPLDISLMQQAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITP 180 Query: 180 FGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP Sbjct: 181 DSDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLQQVFYE 250 >gi|168483521|ref|ZP_02708473.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1873-00] gi|172043050|gb|EDT51096.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1873-00] Length = 249 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYVFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E MR A + L G HDFT F + IRTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLTV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEICYE 248 >gi|229165426|ref|ZP_04293210.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621] gi|228618024|gb|EEK75065.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621] Length = 268 Score = 288 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 262 YLENVEF 268 >gi|196034640|ref|ZP_03102048.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|196045298|ref|ZP_03112530.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|218901631|ref|YP_002449465.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|300119051|ref|ZP_07056762.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|301052143|ref|YP_003790354.1| tRNA pseudouridine synthase A [Bacillus anthracis CI] gi|195992683|gb|EDX56643.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|196023882|gb|EDX62557.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|218540034|gb|ACK92432.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|298723667|gb|EFI64398.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|300374312|gb|ADK03216.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis str. CI] Length = 245 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|169830466|ref|YP_001716448.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator MP104C] gi|238688213|sp|B1I1B5|TRUA_DESAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169637310|gb|ACA58816.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator MP104C] Length = 250 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + + Y+G+ Y G+Q+Q +IQ ++E+ + ++G + V GA RTD+GVHA Sbjct: 1 MPNVRLTLAYDGTAYHGFQKQSGSGLPTIQETLERCLAELSGAALKVTGASRTDAGVHAR 60 Query: 59 RQVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F R + ALN L I+ L+ V FHAR+SA+ ++Y Y + Sbjct: 61 GQVVNFVTGRWGIPTERIPAALNGVL--PGDIAALDAREVPADFHARYSAVAKTYSYTLY 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ + +P++LD MR+AA+HL+GRHDF+TF++ S +RT+ D+ Sbjct: 119 NHPVRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRPVQSAVRTLTRADI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + L+ + A FL+ +R G+L VG + L + + DR GP PP Sbjct: 179 EAQAPLVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDRARAGPTVPPH 238 Query: 238 GLYFDSVEYS 247 GL + VEY Sbjct: 239 GLCLEEVEYD 248 >gi|229194805|ref|ZP_04321592.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293] gi|228588653|gb|EEK46684.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293] Length = 250 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYALDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|331268447|ref|YP_004394939.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] gi|329124997|gb|AEB74942.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] Length = 246 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 131/248 (52%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + +IIEY+GS Y GWQ+QK+ ++Q IE+AI +T + G RTD+GVHA Sbjct: 1 MKKNVKLIIEYDGSNYSGWQKQKHSITVQQKIEEAISQITKTDTEIIGCSRTDAGVHARN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F P A+N+ L I I S V FHARF + + Y+Y I+ R Sbjct: 61 FVANFITNSSVPPSKFKYAINSKL--PKDIVIKKSSEVSLDFHARFHSKGKKYVYTILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN 178 + P +++ + K L+ + M+ A+++ +G H+F +F + S +RTI + DV Sbjct: 119 EEPPTIDRNVMYHFNKDLNVDAMKEASKYFIGSHEFDSFYKKSGSSVKSTLRTIYYCDVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++I+ V+ FL+ +R G+L G G+ +++ + A+DR+ G PP+G Sbjct: 179 KCEDVIKFTVIGEGFLYNMVRIMAGTLIEAGIGRIKPEEIKFIILAKDRERAGRSLPPQG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLQEVLY 246 >gi|91204875|ref|YP_537230.1| tRNA pseudouridine synthase A [Rickettsia bellii RML369-C] gi|157826493|ref|YP_001495557.1| tRNA pseudouridine synthase A [Rickettsia bellii OSU 85-389] gi|123266250|sp|Q1RKH3|TRUA_RICBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228758|sp|A8GUM4|TRUA_RICB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91068419|gb|ABE04141.1| tRNA pseudouridine synthase A [Rickettsia bellii RML369-C] gi|157801797|gb|ABV78520.1| tRNA pseudouridine synthase A [Rickettsia bellii OSU 85-389] Length = 245 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 103/246 (41%), Positives = 153/246 (62%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G+ GWQRQ S+Q +E+AI+ +GE V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + + P + +A+N + + + + N +VD FHARFSAI R Y+YRI+ R Sbjct: 61 IAHFDLSKYFEPYKIIRAINYFTR-PYIVGVCNCELVDNNFHARFSAIARHYVYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ R W I LD M+ ++ +L+G+H+FT+FR+ CQ+ SPI+T+ D+ Sbjct: 120 YPSVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSPIKTLTKLDIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ A SFLH +R+ VGSL LVG W + +++ L+ DRK GP AP GLY Sbjct: 180 NEEIKLYFSAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLY 239 Query: 241 FDSVEY 246 F +Y Sbjct: 240 FIKADY 245 >gi|42559741|sp|Q7MB17|TRUA_PHOLL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 264 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+QG +E+A+ V E + V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGSRYYGWQRQQEVKSVQGCLEEALSKVADEPISVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N +L I++ + VD+ FHARFSA R Y Y I + Sbjct: 61 VHFETSVQRKDAAWTMGVNVHL--PPDIAVRWVKTVDEGFHARFSATARRYRYIIFNHRY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ ++G +DFT+FR++ CQ+ +P R + H +VN +G Sbjct: 119 RPAVLANGVTHFHYPLDEKRMHQAAQCILGENDFTSFRAVQCQSKTPWRNVMHINVNRYG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +G G + + L +DR + A GLY Sbjct: 179 HYVVIDIKANAFVHHMVRNIAGSLMEIGCGNQDINWMAQLLALKDRAKAAATAKAAGLYL 238 Query: 242 DSVEYS 247 +V+Y Sbjct: 239 VAVDYP 244 >gi|49183490|ref|YP_026742.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|165870784|ref|ZP_02215437.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167634709|ref|ZP_02393028.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0442] gi|167640831|ref|ZP_02399090.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|170688574|ref|ZP_02879780.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|170707209|ref|ZP_02897665.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0389] gi|177654958|ref|ZP_02936652.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|227816641|ref|YP_002816650.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|229600408|ref|YP_002865093.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|254686878|ref|ZP_05150736.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066] gi|254725958|ref|ZP_05187740.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055] gi|254738895|ref|ZP_05196597.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western North America USA6153] gi|254743721|ref|ZP_05201406.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254744486|ref|ZP_05202165.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254756260|ref|ZP_05208289.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum] gi|254762079|ref|ZP_05213928.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] gi|270000592|ref|YP_003329030.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] gi|291612202|ref|YP_003541016.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|62901431|sp|Q6I3T8|TRUA2_BACAN RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|49177417|gb|AAT52793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|164713618|gb|EDR19142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167511225|gb|EDR86612.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|167529783|gb|EDR92531.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0442] gi|170127987|gb|EDS96858.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0389] gi|170667434|gb|EDT18191.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|172080343|gb|EDT65431.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|224552835|gb|ACN55049.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|227002712|gb|ACP12455.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|229264816|gb|ACQ46453.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|269850281|gb|ACZ49994.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] Length = 245 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|288904465|ref|YP_003429686.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34] gi|306830500|ref|ZP_07463669.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306832735|ref|ZP_07465871.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338] gi|325977479|ref|YP_004287195.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731190|emb|CBI12738.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34] gi|304425084|gb|EFM28214.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338] gi|304427346|gb|EFM30449.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177407|emb|CBZ47451.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 249 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + + +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGRLFAGFQRQPSERSVQEELEKTLQKLNSGNPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + V +FHAR++ ++Y + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVEQVSDEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD +M+ A + LVG HDFT F + + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLDLTSMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVAI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++++R GP A Sbjct: 179 DDKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEINYD 248 >gi|322386788|ref|ZP_08060412.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100] gi|321269070|gb|EFX52006.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100] Length = 249 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I Y+G + G+QRQ + S+Q IEK + + G+ +V+HGAGRTDSGVHAL Sbjct: 1 MTRYKALISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPIVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V + FHAR+ ++Y + + Sbjct: 61 QVIHFDLPSARDEEKLRFALDT--QTPEDIDVISVEEVTEDFHARYKPHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ M A + L G HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLEIPLMEQAIKALEGTHDFTGFTASGTSVENKVRTITKASLTF 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +E+ L+ +DR+ GP A P Sbjct: 179 DAQRNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVNQIERILEEKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|167750462|ref|ZP_02422589.1| hypothetical protein EUBSIR_01438 [Eubacterium siraeum DSM 15702] gi|167656613|gb|EDS00743.1| hypothetical protein EUBSIR_01438 [Eubacterium siraeum DSM 15702] Length = 250 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 123/249 (49%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA Sbjct: 1 MRNLKVTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + K NA L I+ L+ + FHARF + + Y+Y+I T Sbjct: 61 VFNVKTNCPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYKIYTGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDVN 178 A P D E MR AA+ +VG HDF +F + + +RT+ DV Sbjct: 119 VRDVFSADTALHYPYKPDIEKMRKAARLIVGEHDFASFCKAEAKEHLLTTVRTVYSIDVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ +EI+V FLH +R VG+L + +GK T D+ AL DR+ G PP G Sbjct: 179 QTGDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPPCG 238 Query: 239 LYFDSVEYS 247 LY + V Y Sbjct: 239 LYLNKVFYE 247 >gi|319945640|ref|ZP_08019892.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641] gi|319748239|gb|EFW00481.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641] Length = 248 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 123/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + + G V +HGAGRTD+GVHAL Sbjct: 1 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLMRLNQGNPVTIHGAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I + + V FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQPRDEEKLRFALDT--QTPEDIDFIRVEQVPDDFHSRYQKHSKTYEFIVDYG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD M+ A Q L G HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDVAKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTITEARLVE 178 Query: 180 FGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ QIR+ VG+L +G+G+ ++ L+ +DR GP A P Sbjct: 179 DAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVDQIDLILEKKDRNLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|15903494|ref|NP_359044.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6] gi|116516785|ref|YP_816881.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39] gi|148988650|ref|ZP_01820083.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73] gi|149004327|ref|ZP_01829087.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69] gi|169833383|ref|YP_001694996.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Hungary19A-6] gi|182684548|ref|YP_001836295.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14] gi|221232354|ref|YP_002511507.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC 700669] gi|225855038|ref|YP_002736550.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA] gi|237649225|ref|ZP_04523477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI 1974] gi|237822076|ref|ZP_04597921.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI 1974M2] gi|307127806|ref|YP_003879837.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B] gi|38258775|sp|Q8CWQ1|TRUA_STRR6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122278273|sp|Q04JF7|TRUA_STRP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688376|sp|B1ID11|TRUA_STRPI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691180|sp|B2IRB1|TRUA_STRPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764868|sp|B8ZM12|TRUA_STRPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764870|sp|C1CFH9|TRUA_STRZJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15459107|gb|AAL00255.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6] gi|116077361|gb|ABJ55081.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39] gi|147757704|gb|EDK64720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69] gi|147925851|gb|EDK76926.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73] gi|168995885|gb|ACA36497.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Hungary19A-6] gi|182629882|gb|ACB90830.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14] gi|220674815|emb|CAR69389.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC 700669] gi|225723432|gb|ACO19285.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA] gi|306484868|gb|ADM91737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B] gi|332072765|gb|EGI83246.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17545] gi|332200155|gb|EGJ14228.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47368] Length = 249 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|315612755|ref|ZP_07887666.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 49296] gi|315314865|gb|EFU62906.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 49296] Length = 274 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 26 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 85 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 86 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 143 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M++A + L G HDFT F + +RTI V Sbjct: 144 RPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEARLSV 203 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 204 DETGQFLTFSFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILKKKDRQLAGPTAAPN 263 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 264 GLYLKEIRYE 273 >gi|158320711|ref|YP_001513218.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] gi|158140910|gb|ABW19222.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] Length = 245 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M ++IEY+GS Y GWQR K+ +IQG IEK + +TG V + G+GRTD+GVHA Sbjct: 1 MRNIKLVIEYDGSRYDGWQRLKDSEQTIQGKIEKVLNEMTGSSVEIIGSGRTDAGVHAKN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + +N YL I + + V +FH+R++A ++ Y Y + Sbjct: 61 QIANFKTKSSMSIRDIHNYMNHYL--PQDIVVKEVKEVSDRFHSRYNAQKKKYTYYVWNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A ++ ++ P++LD + M AA L+G HDF F S+ S +RTI+ + Sbjct: 119 RIPSAFQRKYSYYFPETLDLQRMEAAANQLLGTHDFIGFSSVKKAKKSTVRTIEEITIVQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++E + FLH IR +G+L +G + + +++ ++ R G AP +GL Sbjct: 179 NNHMLEFSFIGDGFLHNMIRILMGTLLEIGTREKDISCIDEIFTSKTRAMAGKTAPAQGL 238 Query: 240 YFDSVEY 246 + + V Y Sbjct: 239 FLEEVYY 245 >gi|229137290|ref|ZP_04265906.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST26] gi|228646193|gb|EEL02411.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST26] Length = 250 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|291528184|emb|CBK93770.1| pseudouridylate synthase I [Eubacterium rectale M104/1] Length = 254 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Y +I+ Y+G+ Y GWQ QK+ +IQG ++ + + G+ V V G+GRTD+GVHA+ Q Sbjct: 6 QNYKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDAGVHAVGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + + + LN +L I++ ++S V +FHAR++A+ ++Y+Y I T Sbjct: 66 VASFHMPKHFSKDEIFIWLNEHL--PADIAVTDISNVPDRFHARYNAVSKTYVYTIHTGI 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + K LD + M+ AA +L+G HDF F S +RTI D+ Sbjct: 124 VSDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNKHMKKSTVRTIFSIDIEKT 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I FL IR G+L VGDG+ + L ++DR + G AP GL Sbjct: 184 GADIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMGILASKDRAQAGYTAPACGLS 243 Query: 241 FDSVEY 246 + V+Y Sbjct: 244 LERVDY 249 >gi|329890848|ref|ZP_08269191.1| tRNA pseudouridine synthase A [Brevundimonas diminuta ATCC 11568] gi|328846149|gb|EGF95713.1| tRNA pseudouridine synthase A [Brevundimonas diminuta ATCC 11568] Length = 249 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 116/247 (46%), Positives = 157/247 (63%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +EY+GS Y G+Q Q ++QG+IE AI +G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRFTVEYDGSAYNGFQAQLGQPTVQGAIETAITAFSGQAVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H DL R+W + ALNA+L + + +++L+ + V +HARF+A R YLYRI+ R Sbjct: 61 TCHVDLERDWPAQTVMNALNAHL-VKEAVAVLDCTPVSDDWHARFTANGRKYLYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL++GR W + K LD E M AAQ L+G HDFTTFR CQ++SPI+T+D V+ Sbjct: 120 GRPALDRGRVWHVRKPLDAEAMHAAAQALIGLHDFTTFRDAACQSASPIKTLDVARVSRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + ARSFLH Q+RS GS+ VG G+W DL AL+A+DR CGP+AP +GLY Sbjct: 180 GEEVHLVFEARSFLHRQVRSMAGSIAEVGLGRWRPADLADALEARDRARCGPVAPSDGLY 239 Query: 241 FDSVEYS 247 V Y Sbjct: 240 LTGVTYE 246 >gi|300717686|ref|YP_003742489.1| tRNA pseudouridylate synthase I [Erwinia billingiae Eb661] gi|299063522|emb|CAX60642.1| tRNA pseudouridylate synthase I [Erwinia billingiae Eb661] Length = 271 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 12 KLALGIEYDGSHYYGWQRQQEVRSVQEKLEKALSKVADHPVSVFCAGRTDAGVHGTGQVV 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L D I++ + V FHARFSA R Y Y I R+ Sbjct: 72 HFETTSLRKDAAWTLGVNANL--PDDIAVRWVKPVSDDFHARFSATARRYRYVIYNRRLR 129 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V+ FG Sbjct: 130 PAILHGGVTHFYHPLDVERMQRAGQSLLGENDFTSFRAVQCQSRTPWRRVFHLNVSRFGA 189 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 190 YVIVDIKANAFVHHMVRNIVGSLMEVGCGNQQESWIAELLAAKDRTLAAATARAEGLYLV 249 Query: 243 SVEYS 247 SV+Y Sbjct: 250 SVDYP 254 >gi|126736576|ref|ZP_01752316.1| tRNA pseudouridine synthase A [Roseobacter sp. CCS2] gi|126713889|gb|EBA10760.1| tRNA pseudouridine synthase A [Roseobacter sp. CCS2] Length = 255 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 116/251 (46%), Positives = 164/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYHGAPFAGWQRQNDQPSVQGAIEAALAKLEPRDHTIAAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK ++I+N + V +HARF A+ R YL+R+++R+ Sbjct: 61 VAHCDMERDWDPFRLSEALNFHLK-PAPVAIVNCAQVADDWHARFDAVERQYLFRLMSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 APL + G+ W + LD + M+ A L+G+HDFTTFRS CQA SP++T+D V Sbjct: 120 APLTSDAGQMWRVKHPLDADAMQAGADQLLGQHDFTTFRSSICQAKSPVKTLDALRVEAL 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G V ARSFLH Q+RSFVG+L+ VG WT D+ KAL A+DR CGP+ PP Sbjct: 180 PHANGTEYRFHVRARSFLHNQVRSFVGTLERVGAEAWTPDDVGKALAAKDRSACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY +V+Y Sbjct: 240 QGLYLAAVKYP 250 >gi|229053988|ref|ZP_04195422.1| tRNA pseudouridine synthase A [Bacillus cereus AH603] gi|228721406|gb|EEL72927.1| tRNA pseudouridine synthase A [Bacillus cereus AH603] Length = 252 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIGLIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|219681571|ref|YP_002467957.1| pseudouridylate synthase I [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682129|ref|YP_002468513.1| pseudouridylate synthase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471256|ref|ZP_05635255.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254789608|sp|B8D8Z8|TRUA_BUCA5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789609|sp|B8D7A3|TRUA_BUCAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219621862|gb|ACL30018.1| pseudouridylate synthase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624414|gb|ACL30569.1| pseudouridylate synthase I [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085941|gb|ADP66023.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087094|gb|ADP67174.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087644|gb|ADP67723.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 266 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEYS 247 VEY Sbjct: 247 VEYP 250 >gi|163795438|ref|ZP_02189405.1| Pseudouridylate synthase [alpha proteobacterium BAL199] gi|159179424|gb|EDP63955.1| Pseudouridylate synthase [alpha proteobacterium BAL199] Length = 248 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 120/248 (48%), Positives = 169/248 (68%), Gaps = 2/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ NG+++QG+IE A+F +G+ V V GAGRTD+GVHA Q Sbjct: 1 MTRYRLTVEYDGAPFVGWQRQDNGATVQGAIEDAVFAFSGQRVEVAGAGRTDTGVHAEGQ 60 Query: 61 VAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL + V + A+NA+L+ +++++ S+ FHARFSAI RSY Y I+ R Sbjct: 61 VAHIDLATDRFDAVTVMNAINAHLR-PLPVAVVSASVASPDFHARFSAIWRSYRYVIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLAL+ GRAW + LD M A+ L+G HDFT+FR++HCQ+ SP++T+D V+ Sbjct: 120 RAPLALDLGRAWSVLAPLDVAAMSAGAERLIGHHDFTSFRAVHCQSKSPMKTLDVLQVSR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH Q+R+ VG+L+LVG+GKW D+ AL+A+DR GP AP +GL Sbjct: 180 HGERIVVEARARSFLHHQVRNMVGTLRLVGEGKWQPDDVTAALKARDRVAAGPTAPADGL 239 Query: 240 YFDSVEYS 247 +V Y Sbjct: 240 TLTAVGYP 247 >gi|89055953|ref|YP_511404.1| tRNA pseudouridine synthase A [Jannaschia sp. CCS1] gi|123400973|sp|Q28LN3|TRUA_JANSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88865502|gb|ABD56379.1| tRNA pseudouridine synthase A [Jannaschia sp. CCS1] Length = 261 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 121/251 (48%), Positives = 160/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY IEY+G + GWQRQ + S+QG++E A+ + ++ + AGRTD+GVHAL Q Sbjct: 1 MPRYAFRIEYDGHPFKGWQRQTDLPSVQGAVEAALAKLEADVPTIAAAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK ++I + FHARFSA RSY YR+I R+ Sbjct: 61 VAHADMQRDWDPFRLAEALNYHLK-PAPVAITACARAHDDFHARFSATWRSYTYRMICRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +G AW + +LD M A+HL+G+HDFTTFR+ HCQA SPI+T+D V Sbjct: 120 APLVHARGHAWAVRGTLDVTAMAEGARHLIGKHDFTTFRATHCQALSPIKTMDEIRVEEV 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I + A+SFLH Q+RS VGSL+ VG G W D+ +AL+A DR ECG +APP Sbjct: 180 SLPAGTEIRFHLKAQSFLHNQVRSIVGSLEHVGSGAWAPDDMRRALEACDRAECGTVAPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 DGLYMTGVGYD 250 >gi|256847793|ref|ZP_05553238.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis 101-4-CHN] gi|256715482|gb|EEU30458.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis 101-4-CHN] Length = 253 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 MIRY + Y+G+ + G+Q Q + +I+ +++ + + + + G+GRTD+GVHA Sbjct: 1 MIRYKITFAYDGTNFSGFQIQPHKRTIEQTLKTIVNRMAKNPDPAISIIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD + +ALN+ L I + IV +FHAR++A R+ Y YR+ Sbjct: 61 LNQVAHFDFPYHIPEQSMVRALNSQL--PLDIIVKKAEIVSNEFHARYNAHRKRYRYRVT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D +M AAQ LVG HDFT+F + QA S IRTI V Sbjct: 119 QGEFVDPFKRNYTAHFKYPVDIAHMNRAAQDLVGTHDFTSFVASGSQAKSNIRTIYEAKV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V FL+ Q+R V L +G G+ D+++ L A+DR+E AP Sbjct: 179 YYEDHDHEVIFEFVGNGFLYNQVRIMVALLLEIGSGQRPVDDVQRVLAARDRQEARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY +V+Y Sbjct: 239 ASGLYLVNVDY 249 >gi|85373239|ref|YP_457301.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594] gi|123005078|sp|Q2NCT7|TRUA_ERYLH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84786322|gb|ABC62504.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594] Length = 247 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 117/247 (47%), Positives = 165/247 (66%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G+ + G QRQK+G S+Q ++E+A + + +H AGRTD+GVHAL Sbjct: 1 MTRFALTLEFDGTPFMGLQRQKHGPSVQQAVEEAARATLNQDITLHSAGRTDTGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +HFD + P L LNA+L+ I++ N I+ + +HARF+ I RSY+YRII R+ Sbjct: 61 RSHFDAETDLTPFRLMGGLNAHLR-PHPIAVTNCEIMPEDWHARFACIGRSYVYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +++ RAW +P+ LD E M+ AAQ LVG HDFTTFRS CQA P++++D +V Sbjct: 120 APLTIDRKRAWQVPQQLDHEAMQRAAQLLVGTHDFTTFRSTQCQAKDPVKSLDRLEVERD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS VG LKLVG G W ++E+AL A+DR+ G APP GLY Sbjct: 180 GDEIRVHAEARSFLHHQVRSMVGCLKLVGQGTWREEEVEEALLARDRQRLGLNAPPHGLY 239 Query: 241 FDSVEYS 247 F + EY Sbjct: 240 FVAAEYP 246 >gi|292492023|ref|YP_003527462.1| tRNA pseudouridine synthase A [Nitrosococcus halophilus Nc4] gi|291580618|gb|ADE15075.1| tRNA pseudouridine synthase A [Nitrosococcus halophilus Nc4] Length = 259 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +EY GS + GWQ Q+ ++Q ++E+A+ V + + V AGRTD+GVHA QV Sbjct: 1 MRIAFGVEYEGSSFCGWQSQRGVPTVQATLEEAVSKVANQPITVITAGRTDAGVHAAAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + N L + +L VD+ FHARFSA+ R Y Y I+ R+ Sbjct: 61 VHFDTTASRLEHNWIFGCNMNL--PPEVVVLWAQPVDETFHARFSAVARHYRYVILNRRV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ R L MR HL+G HDF++FR+ CQA SPIR + +V Sbjct: 119 RPAIANRRVTWYCHPLSVSRMREGGAHLIGEHDFSSFRAKACQAKSPIRNVHRLEVRRQE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L VG G+ +E+ LQA+ R A P+GLY Sbjct: 179 DFVVIDISANAFLHHMVRNIAGVLMAVGKGEQPPCWVEEVLQARCRALGSVTARPDGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 MGVDYP 244 >gi|323143617|ref|ZP_08078294.1| tRNA pseudouridine synthase A [Succinatimonas hippei YIT 12066] gi|322416680|gb|EFY07337.1| tRNA pseudouridine synthase A [Succinatimonas hippei YIT 12066] Length = 261 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY G Y G+QRQ N ++QG +EKA+ ++ E V + AGRTD+GV+A QV Sbjct: 1 MRVALGVEYEGWNYAGFQRQPNAVTVQGELEKALSIIADEPVSLVCAGRTDAGVNATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ ++ L N L I+I IV + FHARFSA R Y Y I Sbjct: 61 IHIDITKDRSEKALLLGTNTKL--PSDIAITWAKIVSEDFHARFSARARRYRYIIQNTMH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + D E M+ AA+ L+G HDF +F+ Q+SS R + + +++ G Sbjct: 119 RPGVLNKGVSVYHGDYDIELMQKAAKILIGEHDFASFKGADEQSSSTFRCVHYIEISRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + A +FL+ +R+ VGSL LVG ++ E+A +A++R GP A P+GLY Sbjct: 179 PFIVFDIAANAFLNHMVRNIVGSLLLVGSKVKSTAWFEEAFKARNRDAAGPTAHPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 VDVTYP 244 >gi|289422511|ref|ZP_06424354.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius 653-L] gi|289157083|gb|EFD05705.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius 653-L] Length = 243 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 124/246 (50%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y G+ Y GWQRQK+ IQG +E A V + V G+GRTD+GVHAL Q Sbjct: 1 MKNIRIKVAYQGTNYCGWQRQKDSLGIQGELEYAGQKVFASKIDVTGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + + + LN L I++L VD+ FH+RFSA ++Y Y+I + Sbjct: 61 VANFKVETTIPIDKIPEVLNNKL--PKDIAVLEAVEVDEDFHSRFSAHNKTYRYQIYPSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K + + LD + M+ + LVG HDF F S + +R I V Sbjct: 119 IRSPFYKDTCYQVKSPLDLDRMKKEVKGLVGVHDFVGFMSSGSSVKTTVREIYDAKVFEE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI + + FL+ +R G+L +G G + L+++DR G APP+GL+ Sbjct: 179 GDLIVLELTGNGFLYNMVRIIAGTLVDMGRGHIG-DSMVDILESKDRGRAGHTAPPQGLF 237 Query: 241 FDSVEY 246 VEY Sbjct: 238 LKEVEY 243 >gi|307702068|ref|ZP_07639075.1| tRNA pseudouridine synthase A [Streptococcus mitis NCTC 12261] gi|307616555|gb|EFN95745.1| tRNA pseudouridine synthase A [Streptococcus mitis NCTC 12261] Length = 249 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQTHARSVQEEIEKTLTRLNKGKAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|224369316|ref|YP_002603480.1| TruA1 [Desulfobacterium autotrophicum HRM2] gi|223692033|gb|ACN15316.1| TruA1 [Desulfobacterium autotrophicum HRM2] Length = 246 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + +EY+G+ Y GWQ Q N ++Q IEKA+ + + + + G+GRTD+GVHAL QV Sbjct: 3 TNFKLTLEYDGTPYSGWQVQNNCPTVQEEIEKALSRMLNQPIRISGSGRTDAGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F L ++LN+ LK I + VD+ FH+R+SA + Y Y + R+ Sbjct: 63 ANFQAATTIGAAQLKRSLNSLLKGP--IVVHECRKVDQSFHSRYSARAKEYHYHFLNRED 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 P + + W I L M + G HDF F S+ +RT+ Sbjct: 121 PCGVGRNYVWHIRTPLSIPAMEECCPIITGTHDFKAFEGSGSPRSTTVRTLFSTGFERTA 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ++ FL +R+ VG+L L G GK T + + L+ +DR G AP +GL+ Sbjct: 181 EDRFTFKIKGDGFLRFMVRNIVGTLVLAGAGKITPENFKTILEGKDRGRAGATAPAKGLF 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LVEVFY 246 >gi|317471507|ref|ZP_07930858.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA] gi|316901002|gb|EFV22965.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA] Length = 249 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M++ + IEY+G+ Y GWQ+ N S+IQG +E + +TGE + + G+GRTD+GV Sbjct: 1 MMKRNIRLKIEYDGTRYQGWQKLGKNANASTIQGKLESVLSKMTGESIQIIGSGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA Q+A+F + + + L YL I I+ V ++FH+R +A +++Y YR Sbjct: 61 HACGQIANFHTDCSFSCREIKEYLTKYL--PSDIGIVTADEVSERFHSRLNAKQKTYQYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I E+ W P++L+ E M AA +G HDF F S+ S +RTI Sbjct: 119 IAIPGTVNVFERKYLWKYPETLNIEKMNKAAAFCLGTHDFLGFSSVKKTKKSTVRTIYSI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I + FL+ +R G+L +G G + Q++DRK+ G AP Sbjct: 179 VIEEEHSEIRLSFTGDGFLYNMVRILTGTLAEIGAGSRDPESIFHVFQSKDRKDAGITAP 238 Query: 236 PEGLYFDSVEY 246 P+GL+ +VEY Sbjct: 239 PQGLFLMNVEY 249 >gi|68171651|ref|ZP_00545015.1| tRNA pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa] gi|88658037|ref|YP_507432.1| tRNA pseudouridine synthase A [Ehrlichia chaffeensis str. Arkansas] gi|123750061|sp|Q2GGK1|TRUA_EHRCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|67998925|gb|EAM85612.1| tRNA pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa] gi|88599494|gb|ABD44963.1| tRNA pseudouridine synthase A [Ehrlichia chaffeensis str. Arkansas] Length = 245 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 111/246 (45%), Positives = 157/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+QK+ +SIQ +E AI + + V+ AGRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSNFIGWQKQKHSSNSIQEILENAILKFSQQHTTVYVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ A+N +L I I+IL++ D +FHARFSA +R YLY+II R Sbjct: 61 VAHFDLTTNLDTYVVRNAINYHL-IPHAIAILSVEKTDDKFHARFSAKKRHYLYKIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL ++ RAWLI L+ ENM A +++ G HDF++FR+ HCQ+ +PI+TID + Sbjct: 120 SPLTIDYNRAWLIHNPLNIENMIQAIEYIKGNHDFSSFRARHCQSKNPIKTIDDLKIIHN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A SFLH Q+R VG+L G ++ ++ L+A++R G APP GLY Sbjct: 180 NQSINIHISAISFLHHQVRIIVGTLVECGKNNFSPEHIKNILKAKNRSYAGMTAPPYGLY 239 Query: 241 FDSVEY 246 F V+Y Sbjct: 240 FVKVDY 245 >gi|167746683|ref|ZP_02418810.1| hypothetical protein ANACAC_01394 [Anaerostipes caccae DSM 14662] gi|167653643|gb|EDR97772.1| hypothetical protein ANACAC_01394 [Anaerostipes caccae DSM 14662] Length = 249 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M++ + IEY+G+ Y GWQ+ N S+IQG +E + +TGE + + G+GRTD+GV Sbjct: 1 MMKRNIRLKIEYDGTRYQGWQKLGKNANASTIQGKLESVLSKMTGESIQIIGSGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA Q+A+F + + + L YL I I+ V ++FH+R +A +++Y YR Sbjct: 61 HACGQIANFHTDCSFSCREIKEYLTKYL--PSDIGIVTADEVSERFHSRLNAKQKTYQYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I E+ W P++L+ E M AA +G HDF F S+ S +RTI Sbjct: 119 IAIPGTVNVFERKYLWKYPETLNIEKMNKAAAFCLGTHDFLGFSSVKKTKKSTVRTIYSI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I + FL+ +R G+L +G G + Q++DRK+ G AP Sbjct: 179 VIEEEHSEIRLSFTGDGFLYNMVRILTGTLAEIGAGTRDPESIFHVFQSKDRKDAGITAP 238 Query: 236 PEGLYFDSVEY 246 P GL+ +VEY Sbjct: 239 PHGLFLMNVEY 249 >gi|304311263|ref|YP_003810861.1| tRNA pseudouridine synthase A [gamma proteobacterium HdN1] gi|301796996|emb|CBL45209.1| tRNA pseudouridine synthase A [gamma proteobacterium HdN1] Length = 265 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + IEY+GS Y GWQRQ + ++Q +E A+ V V V GRTD+GVH Q Sbjct: 1 MRIALGIEYDGSPYHGWQRQGHEPNTVQQILESALSQVADHPVTVICCGRTDAGVHGYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P NA L +IS+ V + FHARFSA R Y Y I Sbjct: 61 VVHFDTHAMRTPRAWIHGANAAL--PHSISVRWSQEVPEHFHARFSAYARRYCYVIYNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + LD M AQ LVG HDFT+FR++ CQA SPI+TI V Sbjct: 119 IRPALGMRHMTWQYRPLDERQMEEGAQALVGTHDFTSFRALGCQAKSPIKTIHSIRVERR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I I V A ++LH +R+ G L VG GK S +++ L+ +DR G APP GLY Sbjct: 179 GAMIFISVHANAYLHHMVRNIAGVLMAVGTGKAASRWVKEVLELRDRSRGGVTAPPYGLY 238 Query: 241 FDSVEYS 247 F +Y Sbjct: 239 FMEAQYP 245 >gi|302873576|ref|YP_003842209.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307688243|ref|ZP_07630689.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302576433|gb|ADL50445.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 245 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 134/248 (54%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQ+ + +IQ +EK + + E V V G+GRTD+GVHA + Sbjct: 1 MNNYKLTIQYDGKNYRGWQKLSDSDKTIQSKLEKVLSTLVDEEVNVIGSGRTDAGVHARK 60 Query: 60 QVAHFDLVREWVPVILCKAL-NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q+A+F ++ L + Y + + I + + VD++FHAR++A ++ Y YRI Sbjct: 61 QIANFHTEKDL---KWKDVLKHCYTYLPEDIVVKSCDKVDEKFHARYNAKKKIYTYRICN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A E+ ++L+ K L+ + M A+++ +G HDF +F S+ + S +R I +N Sbjct: 118 SAFGDAFERKYSYLVDKKLNIDKMLAASKYFIGIHDFKSFTSMKSKKKSTVREIYDISIN 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+++EI + FLH IR G+L VG GK ++ + +R + G AP G Sbjct: 178 CIGDMVEITYIGEGFLHNMIRILTGTLIEVGLGKMKIDEIPTIMDGLERSDAGFTAPAHG 237 Query: 239 LYFDSVEY 246 L+ V Y Sbjct: 238 LFLVDVIY 245 >gi|229159574|ref|ZP_04287588.1| tRNA pseudouridine synthase A 2 [Bacillus cereus R309803] gi|228623876|gb|EEK80688.1| tRNA pseudouridine synthase A 2 [Bacillus cereus R309803] Length = 250 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + V + K LN YL + ISI N+ V ++FHAR+++ ++YLY+I Sbjct: 66 QIANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHERFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVESMKQAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|225862468|ref|YP_002747846.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|225790549|gb|ACO30766.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] Length = 245 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|163733492|ref|ZP_02140935.1| tRNA pseudouridine synthase A [Roseobacter litoralis Och 149] gi|161393280|gb|EDQ17606.1| tRNA pseudouridine synthase A [Roseobacter litoralis Och 149] Length = 256 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 123/251 (49%), Positives = 167/251 (66%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK S++QG+IE+A+ + + AGRTD+GVHA+ Q Sbjct: 1 MHRYALKVEYHGAPFVGWQRQKEHSTVQGAIEQALGKIAPAPHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVR+W P L +ALN +LK I+I ++VD +HARFSA +R YL+RI+ R+ Sbjct: 61 VAHCDLVRDWDPFRLSEALNYHLK-PAPIAITACTVVDADWHARFSARQRQYLFRILCRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP ++G W + ++LD MR AA L+G+HDFTTFRS CQA SP++T+D DV+ Sbjct: 120 APATHQRGLVWQVKQNLDVAAMREAAALLIGQHDFTTFRSTICQAESPVKTLDRLDVSEV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +G I V ARSFLH Q+RSFVG+L+ VG G T D+ +AL +DR CGP+ PP Sbjct: 180 ETPYGREIHFDVRARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 YGLYLAHVVYD 250 >gi|311086513|gb|ADP66594.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 266 Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEYS 247 VEY Sbjct: 247 VEYP 250 >gi|160894208|ref|ZP_02074986.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50] gi|156864241|gb|EDO57672.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50] Length = 273 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +I Y+G+ Y GW+ +K+ +IQG IE + L+ GE V ++GAGRTD+GVHA Sbjct: 25 MQNYRFLIAYDGTRYHGWEHKKDVVTIQGKIESVLSLMAGEEVRINGAGRTDAGVHARAM 84 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA + + P + +N YL D I IL ++ ++FHARF+A + Y Y I + Sbjct: 85 VASGPVPTDKTPEEIRDYMNHYL--PDDICILEVTPAAERFHARFNAKGKHYRYTIYRGR 142 Query: 121 APLALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ W + + ++DCE MR AA +LVG HDF +F S +R + D+ Sbjct: 143 LKPVFDRKYVWTLDEGETIDCERMRKAAAYLVGEHDFKSFCGNKQMKKSTVRKLFAIDIK 202 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + FL +R G+L VG G+ +E+ L + R+ GP APP+G Sbjct: 203 EDGDYVILDFYGAGFLQNMVRILTGTLVEVGAGRMEPAYMEEVLTGRCRQLAGPTAPPQG 262 Query: 239 LYFDSVEYS 247 L V+Y Sbjct: 263 LCLMQVDYE 271 >gi|262198313|ref|YP_003269522.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365] gi|262081660|gb|ACY17629.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365] Length = 264 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 3/245 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +++EY+G+G GWQRQ N ++Q +E A+ + G V + GA RTD+GVHAL QVAH Sbjct: 7 IRLVLEYDGTGLSGWQRQNNAPTVQAHVEDALSSMLGRAVQIVGASRTDAGVHALGQVAH 66 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P + LN L I+++ + V FHARF + + Y Y + TR A Sbjct: 67 FRTGSSIPPHGFLRGLNGKL--PPAIAVVACAEVRADFHARFDSRGKHYRYALHTRAARA 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-GN 182 L + RAW P+ LD M AAQ ++G DF FR+ C A + R +D ++ + Sbjct: 125 PLLRERAWHCPRPLDLAAMERAAQAMLGERDFQAFRASGCTAKTSRRRVDRVALSRPAAD 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI I V +FL +R G+L VG G+ + ++ L ++DR G AP GL Sbjct: 185 LIHIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHGLTLV 244 Query: 243 SVEYS 247 V Y Sbjct: 245 EVFYP 249 >gi|119475872|ref|ZP_01616224.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2143] gi|119450499|gb|EAW31733.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2143] Length = 288 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+GS Y GWQ Q +++Q ++EKA+ V V+V AGRTD+GVHA Q Sbjct: 27 RVALCVSYDGSAYHGWQSQRKPQVATVQETLEKALSSVANANVIVQCAGRTDTGVHASHQ 86 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + N L +I+I V +F+ARFSA R Y Y I+ R Sbjct: 87 IVHFDSPSARGEKAWVRGGNTNL--PSSIAIQWAKPVSAKFNARFSATARRYRYVILNRP 144 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A A+ LD +M AAQ LVG DFT++R+ CQ+ +P+R I DV+ Sbjct: 145 ARSAILSAGVTWQRYPLDEISMHEAAQALVGELDFTSYRAAACQSKTPMRNIHRVDVSRQ 204 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ I + A +FLH +R+ G L +G G + E+ L A+DR APP GLY Sbjct: 205 GDLVIIDIQANAFLHHMVRNIAGVLMAIGTGAKPTVWAEEVLLAKDRSVAAATAPPHGLY 264 Query: 241 FDSVEYS 247 V Y Sbjct: 265 LIGVTYP 271 >gi|206974202|ref|ZP_03235119.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217958024|ref|YP_002336568.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|222094223|ref|YP_002528280.1| tRNA pseudouridine synthase a [Bacillus cereus Q1] gi|206747442|gb|EDZ58832.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217065270|gb|ACJ79520.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|221238278|gb|ACM10988.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A) [Bacillus cereus Q1] Length = 245 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|90416037|ref|ZP_01223970.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2207] gi|90332411|gb|EAS47608.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2207] Length = 285 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY ++ Y+GS + G+Q+QK+ S+Q +E+A+ V ++V AGRTD+ VHA QV Sbjct: 26 RYAAVVSYDGSAFCGFQKQKHSPSVQQELERALSSVANAEIIVSCAGRTDTAVHASYQVI 85 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD K N+ L D+I++L V++ FHARFSA R+Y Y I + A Sbjct: 86 HFDTQALRTGRNWVKGSNSQL--PDSIALLWADEVNETFHARFSATSRTYRYVIHSAPAR 143 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + K L+ M+ A Q+L+G DF+ FR CQ+ SP R I + G Sbjct: 144 PAILSQGVTWVRKPLNTAAMQEACQYLLGEQDFSAFRGAGCQSLSPNRNITSAKIIQAGE 203 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI V A +F+ +R+ +GSL VG G+ + + ++ +DR + A P+GLY Sbjct: 204 LIVFEVTANAFVLHMVRNIIGSLMEVGFGRRDPGWIGQLIKGRDRTKSAATASPKGLYLV 263 Query: 243 SVEYS 247 V Y Sbjct: 264 QVGYP 268 >gi|229074353|ref|ZP_04207391.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18] gi|228708795|gb|EEL60930.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18] Length = 245 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITNVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 239 YLESVEF 245 >gi|310829551|ref|YP_003961908.1| hypothetical protein ELI_4001 [Eubacterium limosum KIST612] gi|308741285|gb|ADO38945.1| hypothetical protein ELI_4001 [Eubacterium limosum KIST612] Length = 244 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 120/246 (48%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M MII Y G+ Y GWQRQ N +++ ++ AI VTGE V ++G+GRTD+GVHAL Q Sbjct: 1 MKNIQMIIAYKGTRYAGWQRQPNAPTVEEALTGAIKAVTGETVTLYGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHF P ALN L I +L+ + FH+R+SA + Y Y++ Sbjct: 61 SAHFHTESRVPPERFAAALNTRL--PGDIRVLSSCEAPEGFHSRYSAKGKVYTYQLYLNP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +W + +D M+ A+ +G HDF F + +RTI Sbjct: 119 VLSPFYAEYSWHVNYPVDVSRMKAASAAFLGEHDFCGFMAAGSSVRGTVRTIRAITFEQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+ I FL+ +R G+L +G G+ + L + + DRK+ G APP+GL+ Sbjct: 179 GALLRITYTGNGFLYNMVRIMTGTLAEIGMGRIKAEALPGIIASCDRKQAGMTAPPQGLF 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LREVLY 244 >gi|228913175|ref|ZP_04076814.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846580|gb|EEM91593.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 250 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|225857220|ref|YP_002738731.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae P1031] gi|254764871|sp|C1CLU3|TRUA_STRZP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225725422|gb|ACO21274.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae P1031] Length = 249 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQIDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|197285647|ref|YP_002151519.1| tRNA pseudouridine synthase A [Proteus mirabilis HI4320] gi|194683134|emb|CAR43721.1| tRNA pseudouridine synthase A [Proteus mirabilis HI4320] Length = 281 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 19 KIALGIEYDGSHYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQVV 78 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N +L I++ + V FHARFSA R Y Y I + Sbjct: 79 HFETTAHRKDAAWTMGVNTHL--PQDIAVRWVKTVANDFHARFSATARRYRYVIFNHRYR 136 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G+ Sbjct: 137 PAILSSGVTHFHYPLDAQRMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHVNVSRYGD 196 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 197 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQAITWMAELLALKDRTKAAATAKANGLYLV 256 Query: 243 SVEYS 247 SV+Y Sbjct: 257 SVDYP 261 >gi|268318882|ref|YP_003292538.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii FI9785] gi|262397257|emb|CAX66271.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii FI9785] Length = 263 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + IVD+ FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNALM--PIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 121 RFTDPFNRFYTGHYPYPLDISLMQQAARDLIGEHDFTSFAASGGQIVDKVRTIYYVNITP 180 Query: 180 FGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP Sbjct: 181 DPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNQKRPVDDIPRVLKAKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLQHVFYE 250 >gi|229095128|ref|ZP_04226123.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29] gi|228688313|gb|EEL42196.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29] Length = 245 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 239 YLESVEF 245 >gi|150020829|ref|YP_001306183.1| tRNA pseudouridine synthase ACD [Thermosipho melanesiensis BI429] gi|166229846|sp|A6LLJ7|TRUA_THEM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149793350|gb|ABR30798.1| tRNA pseudouridine synthase A [Thermosipho melanesiensis BI429] Length = 244 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 138/246 (56%), Gaps = 6/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + Y+G+ +FG+Q Q N ++QG +EKA+ + E + GAGRTD+GVHA Q Sbjct: 1 MKRFAIEFSYDGTNFFGYQGQPNVRTVQGELEKALERIFKERIFTQGAGRTDAGVHANGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F+ + + ALNA L + I + V+K F+ RF A +R Y Y + T Sbjct: 61 VAAFNCPIDRLAAIDIKNALNANL--PEDIYVKKAWEVEKNFNPRFRAKKRIYHYLVSTN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-N 178 + ++ W L+ E MRIAA++L G HDF++F+ +PIRT+ + N Sbjct: 119 EK-DVFKRNYVWHFKYKLNIEAMRIAARYLEGEHDFSSFKK-GNDKKNPIRTVYRIRILN 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 LI IRV RSFL + +R+ VGSL VG G+WT ++K L+A+ R+E APP G Sbjct: 177 VKKELILIRVEGRSFLRSMVRNIVGSLVRVGLGQWTPEKIKKVLEARSRQEAAGTAPPHG 236 Query: 239 LYFDSV 244 LY V Sbjct: 237 LYLYKV 242 >gi|296446982|ref|ZP_06888917.1| tRNA pseudouridine synthase A [Methylosinus trichosporium OB3b] gi|296255549|gb|EFH02641.1| tRNA pseudouridine synthase A [Methylosinus trichosporium OB3b] Length = 246 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 135/247 (54%), Positives = 173/247 (70%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R+ +IIEY+G + GWQRQ+NG SIQ +E+A+ + +G VVHGAGRTD+GVHAL Sbjct: 1 MPRFALIIEYDGGPFVGWQRQENGVSIQQRLEEAVAALESGARRVVHGAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL R+W L A+NA+L+ D I++L V + F ARFSA+RR Y Y I R Sbjct: 61 QVAHVDLTRDWRADRLRDAINAHLR-PDPIAVLEARGVAEGFEARFSAVRRHYRYIIDNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APL L++GR W + + LD M AAQ LVGRHDFTTFRS CQA SPIRT++ DV Sbjct: 120 RAPLTLQRGRMWHVKRPLDAAAMHAAAQLLVGRHDFTTFRSTECQAESPIRTLERLDVRR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEI ARSFLH Q+RS GSL+ VG G+W++ DL AL+A++R CG +APP GL Sbjct: 180 EGSLIEITTSARSFLHNQVRSLAGSLEHVGSGRWSAADLRAALEARERARCGQVAPPHGL 239 Query: 240 YFDSVEY 246 Y +V+Y Sbjct: 240 YLVAVDY 246 >gi|254253654|ref|ZP_04946971.1| Pseudouridylate synthase [Burkholderia dolosa AUO158] gi|124898299|gb|EAY70142.1| Pseudouridylate synthase [Burkholderia dolosa AUO158] Length = 271 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + NA+L ++++ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTDLDRADFSWVRGTNAFL--PPSVAVQWAKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA + LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWVHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 GHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRDLAAPTFMADGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAHVGYP 245 >gi|229009911|ref|ZP_04167130.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048] gi|229131424|ref|ZP_04260320.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196] gi|228652008|gb|EEL07949.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196] gi|228751342|gb|EEM01149.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048] Length = 268 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 262 YLENVEF 268 >gi|163938417|ref|YP_001643301.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] gi|163860614|gb|ABY41673.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] Length = 245 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 119 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|170754451|ref|YP_001781475.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] gi|169119663|gb|ACA43499.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] Length = 246 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 141/248 (56%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQCSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++I + FLH IR G+L +G S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDSYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|290475958|ref|YP_003468853.1| pseudouridylate synthase I [Xenorhabdus bovienii SS-2004] gi|289175286|emb|CBJ82089.1| pseudouridylate synthase I [Xenorhabdus bovienii SS-2004] Length = 279 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 16 VKIALGIEYDGSRYYGWQRQQEVKSVQECLEKALSKVADEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF + +N++L I++ + VD +FHARFSA R Y Y I + Sbjct: 76 VHFKTSAQRKDAAWTMGVNSHL--PPDIAVRWVKTVDDEFHARFSATARRYRYIIFNHRY 133 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M AAQ L+G +DFT+FR++ CQ++SP R + H +V+ G Sbjct: 134 RPAVLAQGVTHFHYLLDERKMHEAAQSLLGENDFTSFRAVQCQSNSPWRNMMHINVSRHG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +F+H +R+ VGSL +G + + L +DR + A EGLY Sbjct: 194 HYVVVDIKANAFVHHMVRNIVGSLLEIGCSNQDIGWMAELLALKDRTKAAATAKAEGLYL 253 Query: 242 DSVEYS 247 +V+Y Sbjct: 254 VAVDYP 259 >gi|88860431|ref|ZP_01135069.1| tRNA pseudouridine synthase A [Pseudoalteromonas tunicata D2] gi|88817629|gb|EAR27446.1| tRNA pseudouridine synthase A [Pseudoalteromonas tunicata D2] Length = 262 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ N S+Q +E+A+ + V V AGRTDSGVH QV Sbjct: 1 MRIALGIEYDGSNYFGWQRQNNVISVQQEVEQALSRICNHPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N+ L D +++ V FHARFSA R Y Y I+ + Sbjct: 61 VHFDTDANRDISAFYLGMNSVL--PDAVAVRWAQEVSLDFHARFSATARRYRYVILNQNN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K LD + M A +L+G +DFT+FR++HCQ+++P R I H V+ FG Sbjct: 119 RPGILKNGISHYHLPLDADAMNQACSYLLGENDFTSFRAVHCQSNTPFRNIMHLRVDRFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G GK+ ++ ++ L+ +DR + A GLY Sbjct: 179 DYVVIDIKANAFLHHMVRNITGCLIDIGIGKYPASWMKDVLELKDRTKASATAKAAGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|297182649|gb|ADI18807.1| pseudouridylate synthase [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 245 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 115/246 (46%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ QKNG SIQ ++ AIF + E VVV GAGRTDSGVHAL Q Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGPSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ +N ++ + +++L ++ K+FHARF A +R+Y Y II RQ Sbjct: 61 VAHFDLKKKIKKKSFLPGVNQHIG-NKPVTVLKINKTSKKFHARFDAKKRTYQYTIINRQ 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PLAL+K +AW I K LD + M+ A+ L+G HDF+TFR+ C A SPI+T+++ V Sbjct: 120 SPLALQKNKAWHIRKKLDVKAMKKGAKLLLGTHDFSTFRASSCGAKSPIKTMENISVKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I ++ +RSFL Q+RS VGS+K +GDGKW D +K+ ++++R +C P AP GLY Sbjct: 180 KDKITLKFTSRSFLQQQVRSMVGSIKYLGDGKWKLDDFKKSFKSKNRLKCAPPAPACGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LTKIKY 245 >gi|47567253|ref|ZP_00237967.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] gi|47556096|gb|EAL14433.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] Length = 245 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGCVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|126667385|ref|ZP_01738357.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17] gi|126628141|gb|EAZ98766.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17] Length = 303 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++ EY+G + GWQ+QK+G ++Q + KA V V + AGRTD+GVHA Q+ Sbjct: 18 RVALVFEYDGREFHGWQQQKSGIRAVQQQLAKAASKVADHDVELVCAGRTDAGVHASYQL 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N L IS+ FHARFSA+ R Y Y I Sbjct: 78 VHFDTPSLRTMRSWVMGINTAL--PFDISVRWAGQCQGDFHARFSAVYRRYRYIIYNNPV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++G+ + L+ ENM AAQ LVG HDF+ FR+ CQ+ SPIR + V G Sbjct: 136 RPGIQRGQVSWNFRPLNAENMHQAAQALVGEHDFSAFRAAGCQSHSPIRFLQSISVTRKG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V A +FLH +R+ G+L VG + + + L +DR++ G APP+GLY Sbjct: 196 DYLVIDVQANAFLHHMVRNIAGALMAVGCQEQAPDWIGQILATKDRRQAGVTAPPDGLYL 255 Query: 242 DSVEYS 247 V Y Sbjct: 256 VDVGYP 261 >gi|324324528|gb|ADY19788.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 245 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+++ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILESKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|154498331|ref|ZP_02036709.1| hypothetical protein BACCAP_02320 [Bacteroides capillosus ATCC 29799] gi|150272642|gb|EDM99820.1| hypothetical protein BACCAP_02320 [Bacteroides capillosus ATCC 29799] Length = 249 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y G+ Y GWQ QKN +++ ++EKAI V G V GAGRTD+GVHA Sbjct: 1 MRNIALKLMYVGTAYHGWQIQKNAVTVEETLEKAIASVVGHPVKCTGAGRTDAGVHAENY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F L A+N L + I ++ + V F+A S I++ Y YRI + Sbjct: 61 IANFRTTSTIPCDRLPLAVNTRL--PEDIVVVKATEVHDGFNAIGSCIKKEYTYRIYNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A RAW PK LD + M+ AA VG HDF +S+ + S +RT+ +F++ Sbjct: 119 IRNAFFVNRAWFYPKHLDEKVMQAAADRFVGTHDFAAVQSVGTEVQSTVRTVHYFNMTRS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++IE RV A FL+ +R+ VG+ +GK+ + L+ + R GP APP GLY Sbjct: 179 GDMIECRVCANGFLYNMVRAMVGTCVYAAEGKFPPEAVSDILEGRCRTAAGPTAPPGGLY 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 MTKLWYE 245 >gi|313891575|ref|ZP_07825185.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|313120034|gb|EFR43216.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] Length = 244 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MIIEY+G+ Y GWQ+QK+ ++QG IEKA VTGE V + GAGRTDSGVHA Q Sbjct: 1 MNYKMIIEYDGTRYEGWQKQKHSDETLQGKIEKAFEKVTGENVQIIGAGRTDSGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + L + L LN L D I I + V+++FH+RF A + Y Y + Sbjct: 61 VVNVHLPYDLNAENLKNELNEIL--PDDIYIKQCTEVEEKFHSRFHAKSKIYEYNLRIGS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +K W K L E M+ AA+ L G HDFT F + S +RT+ ++++ Sbjct: 119 NKDVFQKRFIWQFAKPLCIEKMKRAAEILQGTHDFTAFCNNKNFKKSAVRTVYSIEISTS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ +R FL IR VG+L VG+ K + L L+++ R G APP+GL Sbjct: 179 NDILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQRSNAGFTAPPQGLT 238 Query: 241 FDSVEY 246 SV+Y Sbjct: 239 LISVQY 244 >gi|253988932|ref|YP_003040288.1| tRNA pseudouridine synthase A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780382|emb|CAQ83543.1| tRNA pseudouridine synthase A [Photorhabdus asymbiotica] Length = 264 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ SIQG +E+A+ V E + V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGSQYYGWQRQQEVKSIQGCLEQALSKVADEPISVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA+L I++ + VD+ FHARFSA R Y Y I + Sbjct: 61 VHFETSAQRKDAAWTMGVNAHL--PADIAVRWVKTVDEDFHARFSATARRYRYIIFNHRY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ+L+G +DFT+FR++ CQ+ +P R + H +VN +G Sbjct: 119 RPAVLASGVTHFYYPLDEKRMHQAAQYLLGENDFTSFRAVQCQSKTPWRNVMHINVNRYG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +G G + + L +DR + A GLY Sbjct: 179 HYVVIDIKANAFVHHMVRNIAGSLMEIGCGNQDINWMARLLALKDRTKAAATAKSAGLYL 238 Query: 242 DSVEYS 247 +V+Y Sbjct: 239 VAVDYP 244 >gi|42779623|ref|NP_976870.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] gi|51316696|sp|Q73E17|TRUA2_BACC1 RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|42735539|gb|AAS39478.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] Length = 245 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|238923689|ref|YP_002937205.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] gi|238875364|gb|ACR75071.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] Length = 276 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Y +I+ Y+G+ Y GWQ QK+ +IQG ++ + + G+ V V G+GRTD+GVHA+ Q Sbjct: 28 QNYKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDAGVHAVGQ 87 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + + + LN +L I++ ++S V +FHAR++A+ ++Y+Y I T Sbjct: 88 VASFHMPKHFSKDEIFIWLNEHL--PADIAVTDISNVPDRFHARYNAVSKTYVYTIHTGI 145 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + K LD + M+ AA +L+G HDF F S +RTI D+ Sbjct: 146 VSDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNRHMKKSTVRTIFSIDIEKT 205 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I FL IR G+L VGDG+ + + L ++DR + G AP GL Sbjct: 206 GADIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMEILASKDRAQAGYTAPACGLR 265 Query: 241 FDSVEY 246 + V+Y Sbjct: 266 LERVDY 271 >gi|254931132|ref|ZP_05264491.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262] gi|293582680|gb|EFF94712.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262] gi|328469771|gb|EGF40688.1| tRNA pseudouridine synthase A [Listeria monocytogenes 220] gi|332313028|gb|EGJ26123.1| tRNA pseudouridine synthase A 1 [Listeria monocytogenes str. Scott A] Length = 248 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRIKASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G + + D+ +AL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQDRISPDDISEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|153939803|ref|YP_001391236.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|152935699|gb|ABS41197.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] Length = 246 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 139/248 (56%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVNLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|77458123|ref|YP_347628.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf0-1] gi|77382126|gb|ABA73639.1| pseudouridylate synthase I [Pseudomonas fluorescens Pf0-1] Length = 274 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++EKA+ V + + AGRTD+GVHA QV Sbjct: 8 RVALGVEYKGSRYSGWQRQSTGVLTVQETLEKALSKVADSPISLQCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + N L IS+ I+ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQVDRSLKAWVMGANINL--PHDISVSWAKIMPAHFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQ+L+G HDF+ FR+ CQA SPI+ + H V G Sbjct: 126 RPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQCQAKSPIKQMHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +FLH +R+ G L +G G+ +++ L++++R+ G A P GLY Sbjct: 186 KMIVLDIRANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPFGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|322806167|emb|CBZ03735.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065] Length = 246 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 140/248 (56%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKHSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|283781972|ref|YP_003372727.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068] gi|283440425|gb|ADB18867.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068] Length = 285 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 123/251 (49%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + GWQ Q N ++Q +EKA+ +TG +GRTD+GVHAL Q Sbjct: 1 MRTFKLTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITGVRSRFVASGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F P L K LNA K+ D I I ++ V FH A+R+ Y Y + Sbjct: 61 VAAFSSETGIDPAGLLKGLNA--KVPDDIFIFDVVEVPLAFHPIRDAVRKRYRYVVQDGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ AW + + LD + M A++ L+G HDF +F++ + R + V Sbjct: 119 LRDIFDRQYAWHVRQPLDEQAMLEASRLLLGEHDFASFQTSGSSRLTTERNVLDISVERV 178 Query: 181 GN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + V A FL +R+ VG+L VG G + L+++DR+ G AP Sbjct: 179 DGARTSRVHVEVEADGFLFNMVRNIVGTLVEVGKGTRPVAWTREVLESRDRRRAGMTAPA 238 Query: 237 EGLYFDSVEYS 247 +GL+ V Y Sbjct: 239 QGLFMIGVHYD 249 >gi|229171272|ref|ZP_04298862.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MM3] gi|228612229|gb|EEK69461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MM3] Length = 250 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN +L + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQHL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|55820220|ref|YP_138662.1| tRNA pseudouridine synthase A [Streptococcus thermophilus LMG 18311] gi|55822111|ref|YP_140552.1| tRNA pseudouridine synthase A [Streptococcus thermophilus CNRZ1066] gi|62901189|sp|Q5M1T6|TRUA_STRT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901193|sp|Q5M6C9|TRUA_STRT2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|55736205|gb|AAV59847.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Streptococcus thermophilus LMG 18311] gi|55738096|gb|AAV61737.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Streptococcus thermophilus CNRZ1066] Length = 248 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L M+ AA LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ Q+R+ VG+L +G+G+ + ++ L+++DR GP Sbjct: 179 DEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTVAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|322392372|ref|ZP_08065833.1| tRNA pseudouridine synthase A [Streptococcus peroris ATCC 700780] gi|321144907|gb|EFX40307.1| tRNA pseudouridine synthase A [Streptococcus peroris ATCC 700780] Length = 249 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 M RY +I Y+G + G+QRQ + S+Q IEK + + + V +HGAGRTDSGVHAL Sbjct: 1 MTRYKAVISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGLGVTIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMEEEKLRFALDT--QSPEDIDVISVEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLKV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|315154834|gb|EFT98850.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043] Length = 277 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARG 91 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 92 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 149 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 150 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 209 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 210 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 269 Query: 240 YFDSVEY 246 + D V Y Sbjct: 270 FLDEVYY 276 >gi|289208514|ref|YP_003460580.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. K90mix] gi|288944145|gb|ADC71844.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. K90mix] Length = 269 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +EY+G G GWQRQK+G S+QG +E A+ V + V + AGRTD+GVHA QV Sbjct: 4 QRWALGVEYDGRGLLGWQRQKDGPSVQGHLEAALSFVANDGVELTCAGRTDAGVHATAQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +N+ L D I++ V+ FHARF A R Y Y I R Sbjct: 64 AHFDTSAVRERHSWVLGVNSRL--PDGIALRWAEPVNDDFHARFKACGRRYRYVIANRAV 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ALE GR + LD M AAQ VG HDF++ R+ CQA SPIR + V G Sbjct: 122 RPALEAGRVAWWRRPLDTARMHDAAQTFVGEHDFSSLRAAGCQAKSPIREVHSIAVQRRG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ G L +GDG+ + L A+DR+ G AP GLYF Sbjct: 182 SYVVLDIHANAFLHHMVRNIAGVLLAIGDGREEPGWAAQILAARDRRVSGITAPAGGLYF 241 Query: 242 DSVEYS 247 V+Y Sbjct: 242 VHVDYP 247 >gi|328951248|ref|YP_004368583.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM 14884] gi|328451572|gb|AEB12473.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM 14884] Length = 249 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 128/247 (51%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY+G+ + G+QRQ K ++Q +E A+ + G + V AGRTD+GVHAL Sbjct: 1 MRRIKLTLEYDGTRFAGFQRQAKGERTVQAELESALAQIPGAVPKVVAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H+D P + ALN L + L FHAR+S R Y YRI+ R Sbjct: 61 MVVHYDTEDRIPPEKIPYALNRLL--PPDVRALAAEAAPPGFHARYSCHWRRYRYRILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q P AL + R W +PK LD M+ H +G HDF F + + +RT+ + Sbjct: 119 QMPSALARERTWWVPKPLDANAMQQGLAHFLGEHDFKAFATQ--ERRGTVRTLYRARLER 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +V FL Q+R+ VG+L VG GK + L +RK+ GP APP+GL Sbjct: 177 CGEEIVIDLVGNGFLRGQVRAMVGTLVEVGLGKRDPDVIAWLLAHGERKDAGPSAPPQGL 236 Query: 240 YFDSVEY 246 YF + Y Sbjct: 237 YFVAAGY 243 >gi|315283801|ref|ZP_07871873.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120] gi|313612551|gb|EFR86621.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120] Length = 248 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLRVEEVADDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P L+ M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLAKMKLASERLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + ++ +AL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPEEITEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|307705317|ref|ZP_07642179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597] gi|307621104|gb|EFO00179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597] Length = 249 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M++A + L G HDFT F + IRTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTNVEDKIRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDLILEKKDRQLAGPTAASN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|225871229|ref|YP_002747176.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. equi 4047] gi|254764866|sp|C0M8L4|TRUA_STRE4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225700633|emb|CAW95185.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. equi 4047] Length = 249 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L I FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEIAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|313606591|gb|EFR83384.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL F2-208] Length = 248 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIITYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSDLDITAEKFQKALQVM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G+HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGKHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ KAL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|241895121|ref|ZP_04782417.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313] gi|241871617|gb|EER75368.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313] Length = 249 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 123/251 (49%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 M RY I Y+G+ +FGWQ Q N ++Q +E + + E + V G+GRTD+ VHA Sbjct: 1 MPRYKATIAYDGTDFFGWQVQPNKRTVQAEMELVVNKMAKNPAEHIRVQGSGRTDARVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHFDL + + K L+ L I I + V FHA+F+A ++Y YR Sbjct: 61 KGQVAHFDLPFDIPADAVRKGLSTML--PYDIGIKKVEKVSDDFHAQFNAHNKTYFYRFS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-- 175 T + ++ + L+ E M+ A VG HD+ +F + Q + +RT+ Sbjct: 119 TSEYIDPFKRNYTGHWHRRLNPELMQQAIGDYVGEHDWLSFVASGYQQKTTVRTVYSAKM 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V I FL+ QIR VG L +G+G D+++ + +DR++ AP Sbjct: 179 WVKPEEEEIWFEFSGNGFLYNQIRIMVGVLLEIGNGVRPVDDIKRLFEVKDRQQAQFTAP 238 Query: 236 PEGLYFDSVEY 246 +GLY V+Y Sbjct: 239 AQGLYLMDVKY 249 >gi|319789624|ref|YP_004151257.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1] gi|317114126|gb|ADU96616.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1] Length = 254 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 96/252 (38%), Positives = 135/252 (53%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + +EY G+ Y+GWQ + ++QG I + + V V + GA RTD+GVHA Q Sbjct: 1 MRNFKLTVEYLGTNYYGWQFLPDKPTVQGEIIRCLETVLRHPVKLIGASRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +E L ALN L I + + V +FHAR SA + Y YR+ R Sbjct: 61 VANFLTAKEVSCEKLLSALNGLL--PPDIRVKEVEEVPLEFHARRSARGKLYRYRLFIRD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN- 178 P E R+W + ++L E MR A Q LVG HDFTTF + +PIRTID ++ Sbjct: 119 VPSPFEFRRSWYLRRTLSVEPMREATQFLVGTHDFTTFSKSERKREVNPIRTIDKIEITN 178 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G L+E+ RSFL +R V +L VG G+ ++++ LQA+DR LAP Sbjct: 179 KEWEEGVLVELLFTGRSFLRHMVRVIVATLVKVGTGEVKPQEVKEMLQAKDRSRAPFLAP 238 Query: 236 PEGLYFDSVEYS 247 P+GLY + V Y Sbjct: 239 PDGLYLERVFYD 250 >gi|168184901|ref|ZP_02619565.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|237795344|ref|YP_002862896.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] gi|182672019|gb|EDT83980.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|229263868|gb|ACQ54901.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] Length = 246 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 139/248 (56%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|227888821|ref|ZP_04006626.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii ATCC 33200] gi|227850658|gb|EEJ60744.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii ATCC 33200] Length = 263 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 128/250 (51%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + IVD+ FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNALM--PIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 121 RFTDPFNRFYTGHYPYPLDISLMQQAARDLIGEHDFTSFAASGGQIVDKVRTIYYVNITP 180 Query: 180 FGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L+ +DR+E AP Sbjct: 181 DPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNQKRPVDDIPRVLKTKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLQHVFYE 250 >gi|229056264|ref|ZP_04195685.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603] gi|228721069|gb|EEL72607.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603] Length = 268 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEVDAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y + +E+ Sbjct: 262 YLEKIEF 268 >gi|315173151|gb|EFU17168.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346] Length = 877 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 632 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 691 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 692 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 749 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 750 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 809 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 810 NGKMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 869 Query: 240 YFDSVEY 246 + D V Y Sbjct: 870 FLDEVYY 876 >gi|58040265|ref|YP_192229.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H] gi|62901153|sp|Q5FPX3|TRUA_GLUOX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58002679|gb|AAW61573.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H] Length = 275 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 103/248 (41%), Positives = 145/248 (58%), Gaps = 4/248 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 R+ + IEY+G+GY GWQ+Q +G+SIQG IE A + V AGRTD+GVHA V Sbjct: 22 RWALRIEYDGTGYLGWQKQNDGTSIQGLIEAAASKLVRNRPVPSITAGRTDAGVHAAGMV 81 Query: 62 AH--FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H F + + +LK + +L + V +++ARFSA RSY Y I+ R Sbjct: 82 IHLDFPDDAPIDARQIRDGMGYHLK-PHRVVVLETAKVGPEWNARFSATWRSYRYTILNR 140 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A L + R W I + LD + M+ AA HL+G HDFT+FR++ CQA SPIRT+D +++ Sbjct: 141 PARPGLMENRVWHIKRPLDVDLMQQAANHLLGPHDFTSFRAVACQARSPIRTLDVLNIHR 200 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+ I ARSFLH Q+R+ G+L ++G +W + + L+A+DR G APPEGL Sbjct: 201 DGELVMIDTKARSFLHHQVRNMAGTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEGL 260 Query: 240 YFDSVEYS 247 V Y Sbjct: 261 CLMDVGYP 268 >gi|329900760|ref|ZP_08272580.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480] gi|327549402|gb|EGF33969.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480] Length = 267 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 2/247 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y+G+ + GWQ Q +G+++Q +++A+F T + H AGRTD+GVHA+ QV Sbjct: 5 RLVLGVQYDGTPWHGWQTQLSGNTVQDRLQQALFKFTQSDITTHCAGRTDTGVHAIEQVV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDK--QFHARFSAIRRSYLYRIITRQ 120 HFD + + LN +L S + ++ +D +FHARFSA R+Y Y + Sbjct: 65 HFDTPLDRPISSWVRGLNTHLPPSIAVRWATVARLDPQHEFHARFSARSRTYHYLLYNNP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L +A + + LD + MR AAQ L+G HDFT FRS CQA SP++ + + Sbjct: 125 VRSPLWNDKAGWVFRPLDLDRMREAAQSLIGTHDFTAFRSADCQAKSPVKMMHEIAITRR 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI I++ A +FLH +R+ VGSL VG G+ L + + +DR P P+GLY Sbjct: 185 DDLIVIKLHANAFLHHMVRNLVGSLIYVGTGRQPVDWLSELILQKDRHLAAPTFSPDGLY 244 Query: 241 FDSVEYS 247 ++Y Sbjct: 245 LAKIDYD 251 >gi|253996350|ref|YP_003048414.1| tRNA pseudouridine synthase A [Methylotenera mobilis JLW8] gi|253983029|gb|ACT47887.1| tRNA pseudouridine synthase A [Methylotenera mobilis JLW8] Length = 261 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + + Y+GS Y GWQ Q + +Q ++E A+ V V VH AGRTD+GVHAL Q+ Sbjct: 1 MKIALGVSYDGSLYCGWQSQPSACGVQDALESALQDVAQHAVRVHAAGRTDTGVHALGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + + +NA+L TI + VD FHARFSA RSY Y + Sbjct: 61 VHFETDAKRPLSAWVRGVNAHL--PATIRVEWAHAVDDDFHARFSAFSRSYQYLLYNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +A LD M AA +L+G HDFT FR+ CQA + IR + V G Sbjct: 119 ASALMADKAGWFHLPLDYAAMSEAASYLIGEHDFTAFRASECQAKTAIRHMSQAGVVQSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FL Q+R+ VG+L +G GK+ + + LQ +DR P P GLY Sbjct: 179 QFFLFNFSANAFLQHQVRNMVGALIYIGKGKYPPAYMRELLQGKDRTLSPPTFSPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 TDVGYD 244 >gi|297582482|ref|YP_003698262.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10] gi|297140939|gb|ADH97696.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10] Length = 261 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M R + IEY+GSG+ G+Q+Q N ++QG +E+A+ ++ E +GRTD+GVH +R Sbjct: 1 MRRMLIRIEYDGSGFNGYQKQPNARTVQGELERALSVMHKAESWPCTSSGRTDTGVHGVR 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD ALN+ L D I +L VD FHAR+ + + Y YR+ T Sbjct: 61 QPVHFDSPLTIPDERWPMALNSLL--PDDIQVLGAMEVDASFHARYDTVGKVYRYRVDTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P ++D E MR AA+HL G HDFT+ S +RT+ + Sbjct: 119 KRQTVFRRSFAAHFPGNMDIEAMREAAKHLEGTHDFTSLSSPKTDVKDKVRTLFAVSLEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++ FL+ +R +G+L VG G W + ++ Q+R+ GP AP GL Sbjct: 179 REDGFDVVFAGSGFLYQMVRILMGTLIKVGSGDWPPDVIPAIIEKQERQAAGPTAPGHGL 238 Query: 240 YFDSVEY 246 Y + V Y Sbjct: 239 YLEDVFY 245 >gi|94498945|ref|ZP_01305483.1| tRNA pseudouridine synthase A [Oceanobacter sp. RED65] gi|94428577|gb|EAT13549.1| tRNA pseudouridine synthase A [Oceanobacter sp. RED65] Length = 297 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 138/248 (55%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 R+ +EYNG+ + GWQ+QK+ G S+Q ++EKAI V V V AGRTD+GVHA Sbjct: 29 RRFVAGVEYNGALFKGWQKQKHYAGPSVQEALEKAISRVANHTVDVVCAGRTDAGVHASA 88 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +N L D + + + + FHARFSA+ R Y Y I+ + Sbjct: 89 QVIHFDTSAVRDERAWKLGINTNL--PDGVCVNWIMPAPQDFHARFSAVARRYRYFIMNK 146 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q L + LD E M AAQ+L+G HDFT+FR+ CQA +RT+ + V Sbjct: 147 QVKPGLMHDGVSWWRRPLDAEKMHEAAQYLLGEHDFTSFRAKDCQARHAVRTMKYISVKR 206 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + V A +FL+ +R+ VG L +G+GK E+ L AQDR++ G AP EGL Sbjct: 207 LNDWVIVEVCANAFLYHMVRNIVGVLLPIGEGKKPVEWCEQVLAAQDRRQAGVTAPGEGL 266 Query: 240 YFDSVEYS 247 YF +VEY Sbjct: 267 YFVNVEYP 274 >gi|331266815|ref|YP_004326445.1| tRNA pseudouridine synthase A [Streptococcus oralis Uo5] gi|326683487|emb|CBZ01105.1| tRNA pseudouridine synthase A [Streptococcus oralis Uo5] Length = 249 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++ + IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVILIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + L + A P LD E M++A + L G HDFT F + +RTI V Sbjct: 119 RPKNPLRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLSV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNDRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|300903709|ref|ZP_07121624.1| tRNA pseudouridine synthase A [Escherichia coli MS 84-1] gi|300404291|gb|EFJ87829.1| tRNA pseudouridine synthase A [Escherichia coli MS 84-1] Length = 270 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTRAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|170289026|ref|YP_001739264.1| tRNA pseudouridine synthase A [Thermotoga sp. RQ2] gi|238688847|sp|B1LB83|TRUA_THESQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170176529|gb|ACB09581.1| tRNA pseudouridine synthase A [Thermotoga sp. RQ2] Length = 245 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 127/246 (51%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + A+NA L D + + + V K FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKEVFEVSKNFHPRFDVKKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR AA++L G HDFT+F P+RTI + Sbjct: 119 KQKNVFLRKYVWWFPYELDLDAMRKAAKYLEGTHDFTSF-KTGSDERDPVRTIYRIRILR 177 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP G Sbjct: 178 LKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|293374636|ref|ZP_06620951.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909] gi|325845439|ref|ZP_08168732.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1] gi|292646726|gb|EFF64721.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909] gi|325488545|gb|EGC90961.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1] Length = 258 Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + Y+G+ + G+QRQ ++QG IE A+ ++ + V +H +GRTD+GVHA Q Sbjct: 1 MKRIKCTVAYDGTLFNGYQRQPGQRTVQGEIEAALEKISKQPVTIHSSGRTDTGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V +ALN+ L + I I++ V +FH+R+ + Y YR+ + Sbjct: 61 VFHFDSVVNMDGSRYVRALNSIL--PEDIYIIDSQEVHPEFHSRYHGKVKEYRYRLSLNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +++ + SLD E MR A +L+G H+FT+F + +RTI D+ Sbjct: 119 Y-NPMKRNYVYYHRFSLDVEKMREAMTYLLGTHNFTSFCG-NLDDIDKVRTIYQADLIDE 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + V FL IR VG+L +G+GK D++ ++A++RK G A P+GLY Sbjct: 177 DGELTFIFVGNGFLRYMIRIMVGTLIQIGEGKKKPEDIKTIIEAKNRKLAGHTAKPQGLY 236 Query: 241 FDSVEYS 247 V+Y Sbjct: 237 LQRVDYP 243 >gi|229114082|ref|ZP_04243507.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3] gi|228669352|gb|EEL24769.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3] Length = 245 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +S+E+ Sbjct: 239 YLESIEF 245 >gi|148245016|ref|YP_001219710.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii HA] gi|146326843|dbj|BAF61986.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK N ++Q IE+A+ V + V V +GRTD+GVHA Q Sbjct: 1 MKLALGVEYLGTHFHGWQCQKSNIRTVQQVIEQALSSVANQPVRVFCSGRTDTGVHATCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + N +L ++ + VD FHARFS I R Y Y+I + Sbjct: 61 VIHFETNIKRKNKAWLFGGNVHL--PSDVNFTWVKPVDDNFHARFSVITRQYNYKIHNTK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + P+ LD M A Q+L G+H+F+ FR CQA SPI+ I+ + Sbjct: 119 IRSSIIATHSLWEPRKLDIVAMNKAGQYLTGKHNFSAFRGSLCQAKSPIKNIEFIKLTKH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + + A +FLH +R+ VG+L VG G+ + + L ++ RK+ GP APP+GLY Sbjct: 179 DDNILLDIKANAFLHHMVRNIVGTLLKVGKGEKPIEWVREVLNSKQRKQAGPTAPPQGLY 238 Query: 241 FDSVEY 246 F Y Sbjct: 239 FIRAFY 244 >gi|53803316|ref|YP_114909.1| tRNA pseudouridine synthase A [Methylococcus capsulatus str. Bath] gi|62901252|sp|Q604P1|TRUA_METCA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|53757077|gb|AAU91368.1| tRNA pseudouridine synthase A [Methylococcus capsulatus str. Bath] Length = 271 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSG+ GWQ Q +IQ +E+A+ V V V AGRTD+GVHA+ QV Sbjct: 1 MRIALGIEYDGSGFAGWQWQNGKRTIQAEVERALSRVADAPVRVTCAGRTDAGVHAIEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD L A + + + IL + + FHAR SAI R Y Y I+ R Sbjct: 61 AHFDTESRRSERSWL--LGANTALPEDVRILWVRETEPHFHARLSAIARYYRYEILNRPM 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + LD E MR A +LVG HDF++FR+ CQ+ SP R + V G Sbjct: 119 RSALRPRQFTWCHAPLDVERMREGAAYLVGEHDFSSFRAQQCQSRSPFRRVHFLHVRREG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ G L VG GK + + L +DR + G APP+GLY Sbjct: 179 ERVIMEIAANAFVHHMVRNIAGVLMAVGAGKRDPAWVGELLAMRDRAKGGVTAPPDGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 GGVCYP 244 >gi|293388406|ref|ZP_06632914.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|291082181|gb|EFE19144.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] Length = 280 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 35 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 94 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 95 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 152 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 153 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 212 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 213 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 272 Query: 240 YFDSVEY 246 + D V Y Sbjct: 273 FLDEVYY 279 >gi|254786497|ref|YP_003073926.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901] gi|237685680|gb|ACR12944.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901] Length = 286 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 98/248 (39%), Positives = 139/248 (56%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY G+ + G+Q+Q + ++Q +E+AI V E V + AGRTD+GV A Sbjct: 22 MQRVALGVEYLGASFRGFQKQASTPDTVQARLERAISAVAAEEVTLVCAGRTDAGVSASG 81 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + +N +L D + + V FHARFSA+ R+Y Y I T Sbjct: 82 QVIHFDTLSSRPLKAWLQGVNTHL--PDAVRVTWAMPVSFHFHARFSALSRTYHYWIQTE 139 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + SLD E M++AA+ L+G HDF++FR+ CQA SP+R I Sbjct: 140 PVRSALFSQQLTWTGHSLDVERMQLAAESLLGEHDFSSFRAAQCQAHSPVREIQAVSFER 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +GNLI RV A +FLH +R+ +GSL LVG G + + +E+ L A+DR P A P GL Sbjct: 200 YGNLILFRVRANAFLHHMVRNLIGSLMLVGRGLQSPSWIEQLLAARDRTLAAPTAAPWGL 259 Query: 240 YFDSVEYS 247 +VEY Sbjct: 260 SLVAVEYP 267 >gi|225867856|ref|YP_002743804.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus] gi|259550446|sp|C0MFQ1|TRUA_STRS7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225701132|emb|CAW98001.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus] Length = 249 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEAAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|77919497|ref|YP_357312.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380] gi|123756611|sp|Q3A3B5|TRUA_PELCD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77545580|gb|ABA89142.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380] Length = 252 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQRQ NG S+Q +E+A+ V G + +GRTD+GVHA Sbjct: 1 MSVVRLIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHSLVSSGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + + +N +L I++ + +++ FHAR+SA+ + Y Y I Sbjct: 61 VAHFVTPQPLPMAAYREGVNRFL--PAQIAVRDAALMPDDFHARYSAVGKWYRYSIYRSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L +W + LD + MR AA+ LVGRHDF FR+ C A + +R + D+ Sbjct: 119 VRSPLACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAARTTVREVFSVDIVDA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + V FL +R VG+L VG G ++ L RK+ G AP +GL Sbjct: 179 EEWVYVDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LMEVAY 244 >gi|229015811|ref|ZP_04172787.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273] gi|229022018|ref|ZP_04178574.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272] gi|228739274|gb|EEL89714.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272] gi|228745470|gb|EEL95496.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273] Length = 250 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 244 YLESVEF 250 >gi|49476819|ref|YP_034755.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|62901429|sp|Q6HNW5|TRUA2_BACHK RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|49328375|gb|AAT59021.1| tRNA pseudouridine synthase I (tRNA pseudouridine synthase A) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 245 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHNRFHARYNSKVKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|313884603|ref|ZP_07818364.1| tRNA pseudouridine synthase A [Eremococcus coleocola ACS-139-V-Col8] gi|312620387|gb|EFR31815.1| tRNA pseudouridine synthase A [Eremococcus coleocola ACS-139-V-Col8] Length = 256 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 8/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----VVVHGAGRTDSGVH 56 M RY + +EY+GS Y G+Q Q NG S+Q +++A+ + V+ +GRTDSGVH Sbjct: 1 MPRYAIKVEYDGSNYVGYQVQPNGPSVQAQLDRALLKLAKRPADHPVLTVASGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV HFDL E P+ L KALN+ L I ++ +S V FHAR+ AI ++YLYRI Sbjct: 61 ALGQVVHFDLDFEIHPLALAKALNSILN--KDIRVVAVSQVAPDFHARYHAIGKAYLYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 T+ P ++ P D M+ A LVG+HDFT+F S H +RTI Sbjct: 119 DTQAYPDPFKRFYTLHHPYRYDLGKMQRALTDLVGQHDFTSFCSTHSDKEDKVRTIKFAT 178 Query: 177 VNSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + + FL+ +R VG+L +GDG + ++ L +DR + GP A Sbjct: 179 IEEDLVNQELRFMIAGNGFLYNMVRIIVGTLLQIGDGLKPVDEFKRLLAVKDRNQAGPTA 238 Query: 235 PPEGLYFDSVEY 246 P GLY V+Y Sbjct: 239 DPSGLYLYRVDY 250 >gi|256958303|ref|ZP_05562474.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|257078388|ref|ZP_05572749.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|257420509|ref|ZP_05597499.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|294780153|ref|ZP_06745525.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|307268416|ref|ZP_07549794.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|256948799|gb|EEU65431.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|256986418|gb|EEU73720.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|257162333|gb|EEU92293.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|294452696|gb|EFG21126.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|306515223|gb|EFM83760.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|315036592|gb|EFT48524.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027] gi|329575477|gb|EGG57017.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467] Length = 246 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|266623132|ref|ZP_06116067.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] gi|288865107|gb|EFC97405.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] Length = 404 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 135/246 (54%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y ++++Y+GS Y GWQ+Q N G++IQG +E + +TG V VHG+GRTD+GVHAL Q Sbjct: 158 NYKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGILLKLTGRPVEVHGSGRTDAGVHALAQT 217 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + N YL + I++L++ V +FH+R +A++++YLYRI Sbjct: 218 ANFHADTGMTEDQIRAYFNQYL--PEDIAVLSVEKVQDKFHSRLNAVQKTYLYRIEMGPK 275 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E+ + + K L + M+ AA ++G HDF +F S +RTI + G Sbjct: 276 KDVFERKYCYGLGKQLSADRMKEAAACVLGEHDFKSFCGNKKMKKSTVRTISDITIEKEG 335 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + IR FL+ +R G+L +G + + ++++ L DR+ G APPEGL+ Sbjct: 336 TKLLIRYTGNGFLYHMVRILTGTLIEIGLEERSPQEMKEILLKLDRQAAGFTAPPEGLFL 395 Query: 242 DSVEYS 247 + V Y Sbjct: 396 ERVMYE 401 >gi|327536150|gb|AEA94984.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF] Length = 246 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + R Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|227554442|ref|ZP_03984489.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|229547551|ref|ZP_04436276.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255970776|ref|ZP_05421362.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|256761150|ref|ZP_05501730.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256960384|ref|ZP_05564555.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|257080567|ref|ZP_05574928.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|293384357|ref|ZP_06630242.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|307274425|ref|ZP_07555609.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|307287287|ref|ZP_07567351.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|307289762|ref|ZP_07569700.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|312902050|ref|ZP_07761311.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|312908558|ref|ZP_07767502.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|312908972|ref|ZP_07767834.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|312951751|ref|ZP_07770643.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|227176427|gb|EEI57399.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|229307324|gb|EEN73311.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255961794|gb|EET94270.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|256682401|gb|EEU22096.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256950880|gb|EEU67512.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|256988597|gb|EEU75899.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|291078349|gb|EFE15713.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|306499218|gb|EFM68695.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|306501620|gb|EFM70914.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|306508935|gb|EFM78021.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|310625525|gb|EFQ08808.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|310630239|gb|EFQ13522.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|311290672|gb|EFQ69228.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|311290832|gb|EFQ69388.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|315030617|gb|EFT42549.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000] gi|315148974|gb|EFT92990.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244] gi|315153400|gb|EFT97416.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031] gi|315160015|gb|EFU04032.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312] gi|315166006|gb|EFU10023.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302] gi|315575028|gb|EFU87219.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B] gi|315581086|gb|EFU93277.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A] gi|323478960|gb|ADX78399.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62] Length = 246 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|229148825|ref|ZP_04277073.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1550] gi|228634619|gb|EEK91200.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1550] Length = 250 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDVEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|228906232|ref|ZP_04070119.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 200] gi|228853388|gb|EEM98158.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 200] Length = 250 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|257092844|ref|YP_003166485.1| tRNA pseudouridine synthase A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045368|gb|ACV34556.1| tRNA pseudouridine synthase A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 266 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GSG+ GWQ Q G ++Q +++ A+ G V V AGRTD+GVHA QV Sbjct: 1 MRIALAVEYDGSGFRGWQTQPGGGTVQDAVQDALRQFAGVPVQVVSAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + N++L +++ V FHARFSA R Y Y +I R Sbjct: 61 VHFDAAVERSMFAWVRGTNSFL--PSAVAVRWARPVADDFHARFSAYARRYRYLLINRAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR LD M+ AA L+G DF+ FR+ CQA+SP++ + V FG Sbjct: 119 RTGVWNGRVGWYHHPLDVGTMQAAAHLLLGERDFSAFRAAECQANSPVKVMREAHVRRFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LI A +FLH +R+ VGSL VG GK + + L A DR+ P GLY Sbjct: 179 DLIAFDFEASAFLHHMVRNLVGSLVHVGQGKRPPEWIGELLAAGDRRLAAPTFAAAGLYL 238 Query: 242 DSVEYS 247 +V Y Sbjct: 239 FAVRYP 244 >gi|75761576|ref|ZP_00741532.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895546|ref|YP_002443957.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|228899172|ref|ZP_04063442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 4222] gi|228963570|ref|ZP_04124723.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|74490946|gb|EAO54206.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543347|gb|ACK95741.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|228796088|gb|EEM43543.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860441|gb|EEN04831.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 4222] Length = 245 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|33596565|ref|NP_884208.1| tRNA pseudouridine synthase A [Bordetella parapertussis 12822] gi|33601118|ref|NP_888678.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50] gi|42559762|sp|Q7U376|TRUA_BORPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42559763|sp|Q7U386|TRUA_BORBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33566334|emb|CAE37247.1| tRNA pseudouridine synthase A [Bordetella parapertussis] gi|33575553|emb|CAE32631.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50] Length = 270 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 138/249 (55%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q +E A+ G V AGRTD+GVHA Sbjct: 1 MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L +I + V + FHARFSA R+Y+Y + Sbjct: 61 MQVIHLDTDLQRRDESWVRGVNAFL--PPSIVVQWARPVSEAFHARFSARSRTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA + LD MR AA+ L+G HDF++FRS CQA P+RT+ D++ Sbjct: 119 GRVRPALWAGRAGWAFQPLDVPAMRAAARTLLGEHDFSSFRSSQCQARHPVRTLHRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L VG G+ + ++ L+A+DR+ P P+G Sbjct: 179 ERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGRESVAWMDALLRARDRRLGAPTFMPDG 238 Query: 239 LYFDSVEYS 247 LY ++EY Sbjct: 239 LYLSAIEYP 247 >gi|309798794|ref|ZP_07693058.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1302] gi|308117611|gb|EFO55023.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1302] Length = 249 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IE + + G+ + +HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEITLTKLNKGQAITIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M++A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHYPYPLDVERMQLAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|227517362|ref|ZP_03947411.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] gi|227075232|gb|EEI13195.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] Length = 277 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 91 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 92 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 149 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 150 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 209 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 210 DGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 269 Query: 240 YFDSVEY 246 + D V Y Sbjct: 270 FLDEVYY 276 >gi|238927931|ref|ZP_04659691.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531] gi|238884264|gb|EEQ47902.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531] Length = 256 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 8/252 (3%) Query: 1 MIR-----YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M++ + I Y+G+ Y G+QRQ ++Q +E A+ + GE+V + AGRTD+G Sbjct: 1 MMKQRARNIALTIAYDGTNYHGFQRQTPPVLAVQNVLEGALAKICGEMVELAAAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV +F L +A+N L I + ++F AR SA ++Y+Y Sbjct: 61 VHAYGQVVNFFTDGRIPTEHLPRAVNGLL--PPDIVVSQAWEAPREFSARHSATGKAYVY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 RI + P + AW + + LD E M L G HD+++FR+ SP+RT+D Sbjct: 119 RIEECRVPNPFTRNYAWQVFQPLDHEAMHAVLLLLKGTHDYSSFRAAGGAPMSPVRTLDE 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + I V FL+ +R+ V + VG G+ + + + A+DR+ P A Sbjct: 179 IRLTEEEGRLSIYVHGTGFLYHMVRNIVSTAAAVGMGRISPSRFAEIFAARDRRLAPPTA 238 Query: 235 PPEGLYFDSVEY 246 P GLY +V+Y Sbjct: 239 PACGLYLLAVDY 250 >gi|229101230|ref|ZP_04231994.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28] gi|228682198|gb|EEL36311.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28] Length = 245 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITNVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYMLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +S+E+ Sbjct: 239 YLESIEF 245 >gi|86747801|ref|YP_484297.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris HaA2] gi|123293209|sp|Q2J2C4|TRUA_RHOP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|86570829|gb|ABD05386.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris HaA2] Length = 245 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 127/246 (51%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPTLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+++ I++L+ +V F ARFSAIRR Y YRI+ R+ Sbjct: 61 VAHVDIPKPFRADKLRDALNAHVR-PHPIAVLSAELVADDFEARFSAIRRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALELGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPAKTLDVLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|315149110|gb|EFT93126.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012] Length = 246 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 SGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|95928687|ref|ZP_01311433.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684] gi|95135032|gb|EAT16685.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684] Length = 251 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R C+ +EY+G+ Y GWQ Q N ++Q IE A+ V G V V+ +GRTD+GVHA+ Sbjct: 1 MPRLCLTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIGASVRVYSSGRTDAGVHAIDM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD+ + +N +L I + + V FHARF A + Y YR+ + Sbjct: 61 KAHFDVETLLPLSAYREGVNRFL--PQDIVVRQVCRVADDFHARFDAQGKWYRYRLYRGR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + LD E M AA LVG HDF F++ C A++ RT+ + Sbjct: 119 IRSPLHRLTSWHVAGGLDVEAMTQAADALVGTHDFAAFQASGCAAATTQRTLFEVLLIDE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I V FL +R VGSL VG K T+ L + L + R G AP +GL Sbjct: 179 GDELIIDVRGSGFLKNMVRIIVGSLVEVGRAKLTAGQLAEILASGQRCRAGLTAPAQGLC 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LMQVWYE 245 >gi|229143213|ref|ZP_04271645.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST24] gi|229177012|ref|ZP_04304407.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 172560W] gi|228606487|gb|EEK63913.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 172560W] gi|228640294|gb|EEK96692.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST24] Length = 250 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|163790163|ref|ZP_02184597.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] gi|159874654|gb|EDP68724.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] Length = 279 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 137/247 (55%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY MII+Y+G+ + G+Q Q N ++QG I+KA+ ++T G +++HG+GRTDSGVHA QV Sbjct: 5 RYKMIIQYDGTHFAGFQIQPNDRTVQGEIQKALKIMTKGLEIIIHGSGRTDSGVHAKGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +ALN+ D + + ++IVD FHAR++ + Y YR+ Sbjct: 65 IHFDYPILLPVENMQRALNSLTT--DELFVEKVAIVDTNFHARYNTSGKKYQYRVDLNAI 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-- 179 P ++ P +D E ++ A + L G HDF++F + + + +RT+ V Sbjct: 123 PNPFKRLYTLHHPYPIDMEKLQNALKDLEGEHDFSSFCASNSGRENKVRTVYEASVVKDI 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 F N + FL+ +R FVG+L + +G + ++++ L +DR E GP A P+GL Sbjct: 183 FNNELIFTFSGNGFLYNMVRIFVGTLLQIANGLRPADEIKRLLAVKDRNEAGPTAKPQGL 242 Query: 240 YFDSVEY 246 Y V Y Sbjct: 243 YLMEVYY 249 >gi|116749101|ref|YP_845788.1| tRNA pseudouridine synthase A [Syntrophobacter fumaroxidans MPOB] gi|116698165|gb|ABK17353.1| tRNA pseudouridine synthase A [Syntrophobacter fumaroxidans MPOB] Length = 261 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 130/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +I+EY+GS Y GWQRQ +IQ +E + ++ V V +GRTD+GVHA QV Sbjct: 11 NFKLILEYDGSHYHGWQRQLGVLTIQEVLESRLEVMLQSPVGVRASGRTDAGVHACGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + P + + +N+ L I +L+ + + FHARFSA ++Y Y I+ R Sbjct: 71 NFHVHTRLRPEEILRGINSLL--PPDIVVLHAEVAAESFHARFSATGKTYEYHILNRPIR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AL++ AW +P+ L+ + MR L+GRHDF F + + S RTI D++ N Sbjct: 129 SALQRRYAWHVPQPLEPQRMRECLGSLLGRHDFAAFMASGSKVKSTERTIRRADLDCLEN 188 Query: 183 -LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG++ VG G + L ++DRK G AP GL+ Sbjct: 189 GEMRLVFEANGFLRHMVRNLVGTIVEVGRGVRAPEEFLDILSSRDRKRAGMTAPAHGLFL 248 Query: 242 DSVEY 246 +V Y Sbjct: 249 TAVHY 253 >gi|229042328|ref|ZP_04190078.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH676] gi|228726987|gb|EEL78194.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH676] Length = 250 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|225175641|ref|ZP_03729635.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1] gi|225168970|gb|EEG77770.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1] Length = 246 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+G+GY G+Q QKN ++Q +E+AI V G+ V + +GRTD+GVHA Q Sbjct: 1 MPNIKLTLGYDGTGYHGFQLQKNAVTVQQKLEEAIEKVMGQKVRITASGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F P + ALNA L I I IV FHARF A+ ++Y Y I Sbjct: 61 VINFFAQTGIPPQRIPHALNAVL--PRDIVIYAAEIVSDSFHARFDAVGKTYTYTIDNGA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + A+ + LD M+ AA L G+HDFT+F + + +R + DV Sbjct: 119 HPQVLSRHHAYHVRFPLDANLMKQAAATLQGKHDFTSFMASGSSVKTTVRNLYRLDVEIN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I A FL+ +R G+L VG GK +L + A++R G P GL Sbjct: 179 WPYITITAAADGFLYNMVRIIAGTLIEVGRGKRD-HNLGPVIDAKNRHRAGWTVPAHGLV 237 Query: 241 FDSVEYS 247 VEY+ Sbjct: 238 LREVEYN 244 >gi|39933700|ref|NP_945976.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris CGA009] gi|42559720|sp|P60352|TRUA_RHOPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39647546|emb|CAE26067.1| putative tRNA-pseudouridine synthase [Rhodopseudomonas palustris CGA009] Length = 248 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 4 MPRYKLTIEYDGAPFCGWQLQPALPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+L+ + +++L IV F ARFSA+RR Y YRI R+ Sbjct: 64 VAHVDIPKPFRADKLRDALNAHLR-PNPVAVLAAEIVPDTFEARFSAVRRHYRYRIANRR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+H+FTTFR CQA+SP +T+D DV Sbjct: 123 SNLALDLGKVWRVPKPLDTDAMHRAAQVLIGKHNFTTFRDTECQAASPEKTLDVLDVIRD 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 183 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPEGLY 242 Query: 241 FDSVEY 246 V+Y Sbjct: 243 LMQVDY 248 >gi|222100131|ref|YP_002534699.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359] gi|254764873|sp|B9K8Q0|TRUA_THENN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221572521|gb|ACM23333.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359] Length = 245 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I+EY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MRRVAAIVEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + A+NA L D + + + V K FH RF +R Y Y I T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKKVFEVPKNFHPRFDVKKRIYHYFIHTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + AW P LD E MR AA++L G HDFT+F P+RTI + S Sbjct: 119 REKNVFLRKYAWWFPYELDLEAMRKAAKYLEGTHDFTSF-KTGSDERDPVRTIYRIRILS 177 Query: 180 FG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++I IRV RSFL +R+ V +L VG +W L++ L+A+DR AP G Sbjct: 178 LGKDMILIRVEGRSFLRRMVRNIVAALVKVGLRQWEPEKLKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|228937724|ref|ZP_04100358.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970604|ref|ZP_04131252.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977183|ref|ZP_04137582.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407] gi|228782492|gb|EEM30671.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407] gi|228789070|gb|EEM37001.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821932|gb|EEM67926.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 250 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVYDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HL G HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVESMKAAAKHLAGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|282852680|ref|ZP_06262022.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 224-1] gi|282556422|gb|EFB62042.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 224-1] Length = 258 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 8/251 (3%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHA 57 M+ RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Sbjct: 1 MMTTRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHA 60 Query: 58 LRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD +E + ALNA + + IVD FH ++S + Y Y + Sbjct: 61 KGQVIHFDYPGKEIPAKNMMLALNALM--PIDTVFFDSEIVDSDFHVQYSTKGKWYRYIV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + + Sbjct: 119 DQHRFTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVN 178 Query: 177 VNSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + S + I + FL+ +R VG+L +G+ K D+ + L A+DR+E A Sbjct: 179 ITSDPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTA 238 Query: 235 PPEGLYFDSVE 245 P GLY V Sbjct: 239 PASGLYLQHVF 249 >gi|229154192|ref|ZP_04282315.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 4342] gi|228629282|gb|EEK85986.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 4342] Length = 250 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVVSEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|30018678|ref|NP_830309.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206967868|ref|ZP_03228824.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|218230891|ref|YP_002365270.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|229068175|ref|ZP_04201482.1| tRNA pseudouridine synthase A 2 [Bacillus cereus F65185] gi|229108094|ref|ZP_04237719.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-15] gi|229125922|ref|ZP_04254947.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-Cer4] gi|296501252|ref|YP_003662952.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] gi|42559783|sp|Q813Z9|TRUA2_BACCR RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|29894219|gb|AAP07510.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206736788|gb|EDZ53935.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|218158848|gb|ACK58840.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228657580|gb|EEL13393.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-Cer4] gi|228675369|gb|EEL30588.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-15] gi|228714989|gb|EEL66857.1| tRNA pseudouridine synthase A 2 [Bacillus cereus F65185] gi|296322304|gb|ADH05232.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] Length = 245 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|329121886|ref|ZP_08250501.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] gi|327467824|gb|EGF13316.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] Length = 244 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MIIEY+G+ Y GWQ+QK+ ++QG IEKA VTGE V + GAGRTDSGVHA Q Sbjct: 1 MNYKMIIEYDGTRYEGWQKQKHSDETLQGKIEKAFEKVTGENVQIIGAGRTDSGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ L + L LN L D I I V+++FH+RF A + Y Y + Sbjct: 61 VANVHLPYDLNAENLKNELNEIL--PDDIYIKQCIEVEEKFHSRFHAKSKIYEYNLRIGS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +K W K L E M+ AA+ L G HDFT F + S +RT+ ++++ Sbjct: 119 NKDVFQKRFIWQFAKPLCIEKMKRAAEILQGTHDFTAFCNNKHFKKSAVRTVYSIEISTS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ +R FL IR VG+L VG+ K + L L+++ R G APP+GL Sbjct: 179 NDILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQRSNAGFTAPPQGLT 238 Query: 241 FDSVEY 246 SV+Y Sbjct: 239 LISVQY 244 >gi|228919351|ref|ZP_04082720.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840287|gb|EEM85559.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 250 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|104780847|ref|YP_607345.1| tRNA pseudouridine synthase A [Pseudomonas entomophila L48] gi|95109834|emb|CAK14539.1| tRNA-pseudouridine synthase I [Pseudomonas entomophila L48] Length = 284 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH Q Sbjct: 17 TRIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSTVANEPITVVCAGRTDAGVHGCGQ 76 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD N L IS++ + + FHARF A R Y Y I Sbjct: 77 IVHFDTRAVRDERAWTLGTNFNL--PHDISVVWSAPMPAHFHARFKATARRYRYVIYNDP 134 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD M AA++L+G HDF+ FR+ CQA SPI+ I H V Sbjct: 135 IRPAHLAEEVTWNHRPLDVTRMAEAARYLLGTHDFSAFRASQCQAKSPIKHIHHLRVTRH 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G A P GLY Sbjct: 195 GQMIVLDVRATAFLHHMVRNIAGVLMTIGAGERPVEWAREVLEGRNRREGGVTAHPYGLY 254 Query: 241 FDSVEYS 247 VEY Sbjct: 255 LVQVEYP 261 >gi|326938210|gb|AEA14106.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 245 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVYDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HL G HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVESMKAAAKHLAGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|295319272|gb|ADF99649.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613] Length = 246 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 138/248 (55%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FLH IR G+L VG S D + L+A+DR++ GP AP +GL Sbjct: 179 KDGYVNLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDCKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|291279383|ref|YP_003496218.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1] gi|290754085|dbj|BAI80462.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1] Length = 244 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++EY+G+ +FGWQRQK+ ++QG IE A+ + + + G+GRTD+GVHA+ Q Sbjct: 1 MYKKKCVVEYDGTYFFGWQRQKDLRTVQGVIEAALSKIYKSSINIVGSGRTDTGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF R + LN+ L + + I ++ VD FHA+ SAI ++Y+Y+I Q Sbjct: 61 VFHFVSERYLENRSVLLGLNSVL--PEDVVIKHVEDVDLSFHAQKSAISKTYIYKIYNYQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + RAW I ++D + + + G DF+ +P+RTI++ Sbjct: 119 IRSALFRNRAWWIRDNIDVDLLNEYLKFFKGEKDFSAMCLKRSVPENPVRTINYIFAKRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A FLH +R+ VG++ + + +E+ L+++DRK G APP+GLY Sbjct: 179 GDFINIEINANGFLHNMVRNIVGTVIDLYSDNSSPEKIEEILKSKDRKNAGRTAPPQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LKEVFY 244 >gi|317048970|ref|YP_004116618.1| tRNA pseudouridine synthase A [Pantoea sp. At-9b] gi|316950587|gb|ADU70062.1| tRNA pseudouridine synthase A [Pantoea sp. At-9b] Length = 268 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 9 KLALGIEYDGSRYYGWQRQQEVRSVQEKLEKALSKVANHDVSVFCAGRTDAGVHGTGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V + FHARFSA R Y Y I ++ Sbjct: 69 HFETTSQRADGAWTLGVNANL--PPDIAVRWVKAVPETFHARFSATARRYRYVIYNQRLR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 127 PAILGSGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVMHLNVTRQGP 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L A+DR A EGLY Sbjct: 187 YVIVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMATLLAAKDRTLAAATARAEGLYLV 246 Query: 243 SVEYS 247 +V+Y Sbjct: 247 AVDYP 251 >gi|229077782|ref|ZP_04210409.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-2] gi|228705510|gb|EEL57869.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-2] Length = 245 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HL+G HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLIGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|323340405|ref|ZP_08080662.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644] gi|323092181|gb|EFZ34796.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644] Length = 250 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 RY + + Y+G+ + G+Q Q N ++Q +E A+ ++ + + ++G+GRTD+GVHAL Sbjct: 3 RRYKITLAYDGTNFAGFQVQPNQRTVQSVLEAAVNKMSKNSDYITIYGSGRTDAGVHALG 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + K LN+ L ++ IV FHARF+ + Y+YR+ Sbjct: 63 QVVHFDFPHDIPAEGMLKGLNSML--PLACEVVGCEIVPNDFHARFTTHGKRYMYRVSRG 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ LD E ++ A LVG HDF++F + Q + +RTI V Sbjct: 121 RFTNPFKRFYTGHYKYPLDIEKIKEAMPDLVGTHDFSSFVASGSQTKNHVRTIYEATVRE 180 Query: 180 --FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I FL+ Q+R V +L +G+GK D + + +DR EC AP Sbjct: 181 DKENDEIIFEFCGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRNECRETAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLKEVYYD 250 >gi|84515131|ref|ZP_01002494.1| tRNA pseudouridine synthase A [Loktanella vestfoldensis SKA53] gi|84511290|gb|EAQ07744.1| tRNA pseudouridine synthase A [Loktanella vestfoldensis SKA53] Length = 257 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 118/251 (47%), Positives = 160/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ S+QG+IE A+ ++ + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYHGAPFAGWQRQTGLPSVQGAIEAALAKLSPGPHTIAAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +W P L +ALN +LK D ++IL ++V +HARF A+ R YL+R+I R+ Sbjct: 61 VAHCDLPGDWDPFRLSEALNYHLK-PDPVAILGCALVADDWHARFDAVERQYLFRVIARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 APL E G+ W + LD M+ A HL+G HDFTTFRS CQA SP++T+D + Sbjct: 120 APLTSEAGQMWRVNHDLDAAAMQAGADHLLGLHDFTTFRSSICQAKSPVKTLDELRIEVV 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G V ARSFLH Q+RSFVG+L+ VG G W D+ +AL A+DR CGP+ PP Sbjct: 180 QRAIGTEYRFHVRARSFLHNQVRSFVGTLERVGAGAWQPGDVARALTARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLAGVRYP 250 >gi|187779482|ref|ZP_02995955.1| hypothetical protein CLOSPO_03078 [Clostridium sporogenes ATCC 15579] gi|187773107|gb|EDU36909.1| hypothetical protein CLOSPO_03078 [Clostridium sporogenes ATCC 15579] Length = 246 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 138/248 (55%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + G+GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIGSGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTNFQGSTNEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPQTLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I + FLH IR G+L +G + +++ L+A+DR++ AP +GL Sbjct: 179 KDGYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLSPMNVKTILEAEDRRKASSTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV Y Sbjct: 239 FMTSVTYE 246 >gi|56416825|ref|YP_153899.1| tRNA pseudouridine synthase A [Anaplasma marginale str. St. Maries] gi|62901203|sp|Q5PAN6|TRUA_ANAMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56388057|gb|AAV86644.1| pseudouridylate synthase [Anaplasma marginale str. St. Maries] Length = 247 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 113/248 (45%), Positives = 158/248 (63%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQCVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ SD +SIL+L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLR-SDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L+ +M+ AA H+VG DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|302669997|ref|YP_003829957.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus B316] gi|302394470|gb|ADL33375.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus B316] Length = 262 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 122/246 (49%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ Y GW Q + +I+G + +AI +TGE V V GA RTD+GVHA Sbjct: 5 RRIMLTVSYDGTAYNGWAEQTSTPNTIEGELNRAIERLTGEPVHVIGASRTDAGVHAYGN 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN ++ I I+N V FH R ++Y YRI Q Sbjct: 65 VAVFDTASSIPGDRFVFALN--HELPQDIRIVNSREVATSFHPRHCDTEKTYEYRIFNSQ 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ LD M AA +LVG HDFT+F ++ QA S +RTI V Sbjct: 123 IMDPTKRFYTCHFSMPLDIGRMNAAAHYLVGEHDFTSFCNVESQALSHVRTIKDIRVTRN 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I V FL+ +R G+L +G GK T +++ L + R GP AP EGL+ Sbjct: 183 GDEVVISVTGNGFLYNMVRIIAGTLMQIGRGKGTPAEVKDILDKKYRGAAGPTAPAEGLF 242 Query: 241 FDSVEY 246 VEY Sbjct: 243 L--VEY 246 >gi|220924613|ref|YP_002499915.1| tRNA pseudouridine synthase A [Methylobacterium nodulans ORS 2060] gi|254789641|sp|B8IFQ2|TRUA_METNO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219949220|gb|ACL59612.1| tRNA pseudouridine synthase A [Methylobacterium nodulans ORS 2060] Length = 254 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 113/247 (45%), Positives = 156/247 (63%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ ++Q ++E+AI V VH AGRTD+GVHA Q Sbjct: 1 MPRYKLVVEYDGTAFAGWQRQAADRTVQQALEEAIERFVNRPVRVHCAGRTDAGVHASHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL REW + A NA+L+ + +S+L+ + V F AR SA++R Y YRI+ R+ Sbjct: 61 VVHLDLDREWRTDTVRDATNAHLR-PEPVSVLSAARVGPDFDARHSALKRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL +G W +P +LD M AAQ L+GRHDF+ FR+ CQASSP+RT+D DV Sbjct: 120 SPPALARGYVWHVPWALDAAAMHAAAQTLLGRHDFSAFRAAECQASSPLRTLDQLDVERR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R VG+L L G G+ + + L ++DR CGPLAP GL Sbjct: 180 GDEILVATSARSFLHHQVRGMVGTLMLAGSGRLDTAGVRAVLDSRDRARCGPLAPAAGLT 239 Query: 241 FDSVEYS 247 V+Y Sbjct: 240 LTGVDYP 246 >gi|315925222|ref|ZP_07921436.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621456|gb|EFV01423.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC 23263] Length = 249 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 118/246 (47%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++I Y G+ Y GWQRQ+N SI +I AI VTGE V ++GAGRTD+GVHA Q Sbjct: 1 MRNIALVIAYKGTRYAGWQRQQNAVSIDETIGDAIAAVTGERVTLYGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F ALNA+L I I V FH+R+ A ++Y YR+ Sbjct: 61 RANFKTRVRMPADRFAPALNAHL--PRDIRIQKSFEVPADFHSRYGAKEKTYCYRVWAAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L W + L+ + MR A LVG HDF TF + A + +R ID + Sbjct: 119 VADPLTDDFCWHVRFPLNVDAMRRGAAVLVGTHDFKTFMASGSGAKTTVRRIDAIGIEQK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I FL+ +R G+L +G G+ + L A+ R G AP GL Sbjct: 179 GRMITFTFCGTGFLYNMVRIIAGTLVEMGSGRRDPESMAAILAAKGRTAAGATAPARGLT 238 Query: 241 FDSVEY 246 ++V Y Sbjct: 239 LEAVAY 244 >gi|229188692|ref|ZP_04315731.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 10876] gi|228594881|gb|EEK52661.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 10876] Length = 250 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|148379875|ref|YP_001254416.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 3502] gi|153930931|ref|YP_001384172.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|153935153|ref|YP_001387713.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] gi|148289359|emb|CAL83455.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC 3502] gi|152926975|gb|ABS32475.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|152931067|gb|ABS36566.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] Length = 246 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 140/248 (56%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++I + FLH IR G+L +G S D++ L A+DR++ GP AP +GL Sbjct: 179 KDSYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILDAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|170760365|ref|YP_001787307.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] gi|169407354|gb|ACA55765.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] Length = 246 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 138/248 (55%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+ +DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEVEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|256962868|ref|ZP_05567039.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|307274272|ref|ZP_07555473.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|256953364|gb|EEU69996.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|306509045|gb|EFM78114.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] Length = 246 Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMERACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|332162419|ref|YP_004298996.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666649|gb|ADZ43293.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861403|emb|CBX71633.1| tRNA pseudouridine synthase A [Yersinia enterocolitica W22703] Length = 280 Score = 284 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 20 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQVV 79 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF E +N++L I++ + VD FHARFSA R Y Y I + Sbjct: 80 HFITTAERKNAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRYR 137 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V G Sbjct: 138 PAVLAQGVTHCYMPLDAEKMEQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRHGA 197 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 198 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLYLV 257 Query: 243 SVEYS 247 SV+Y Sbjct: 258 SVDYP 262 >gi|229548121|ref|ZP_04436846.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|257091270|ref|ZP_05585631.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|257417169|ref|ZP_05594163.1| tRNA pseudouridine synthase [Enterococcus faecalis AR01/DG] gi|300861430|ref|ZP_07107514.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|312905329|ref|ZP_07764444.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|229306807|gb|EEN72803.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|257000082|gb|EEU86602.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|257158997|gb|EEU88957.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG] gi|295114364|emb|CBL33001.1| pseudouridylate synthase I [Enterococcus sp. 7L76] gi|300848891|gb|EFK76644.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|310631353|gb|EFQ14636.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|315145838|gb|EFT89854.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141] gi|315162508|gb|EFU06525.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645] gi|315578608|gb|EFU90799.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630] Length = 246 Score = 284 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYLGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|319939850|ref|ZP_08014205.1| tRNA pseudouridine synthase A [Streptococcus anginosus 1_2_62CV] gi|319810861|gb|EFW07180.1| tRNA pseudouridine synthase A [Streptococcus anginosus 1_2_62CV] Length = 249 Score = 284 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ V+VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTKINRGKPVIVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V++ FH+R+ + Y + + Sbjct: 61 QVIHFDLPQKRDEEKLRFALDT--QTPEDIDFISVEEVNEDFHSRYWKHSKIYEFIVDVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD ++ A L G HDFT F + + +RTI D Sbjct: 119 RPKNPMMRHYATHFPYPLDISLIKNAIAKLEGTHDFTGFTASGTSVENKVRTITEARLDF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+G+ +++ L ++R GP A P Sbjct: 179 DEKRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKNRHLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|332970004|gb|EGK09003.1| tRNA pseudouridine synthase A [Psychrobacter sp. 1501(2011)] Length = 314 Score = 284 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + IE+NGS Y GWQRQ+ +Q +E+ + + E + V AGRTD+GVH +AH Sbjct: 52 YALGIEFNGSNYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDAGVHGGNMLAH 111 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + N+ L D I+I + + FHARF AI R Y Y + + Sbjct: 112 FKTSANRGVYNWLRGANSLL--PDDIAIRWIQPMPDDFHARFGAIARRYRYITLNQPQRP 169 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ I + LD M+ AA H+VG+HDF++FR+ CQ++ P+R I H + G Sbjct: 170 AVLNHLVTHIHEPLDLAKMQQAAAHIVGQHDFSSFRAAACQSNQPVRNIHHAKLFQHGQF 229 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G G+ D + L+A+DR P A P+GLYF + Sbjct: 230 IVFDIQADGFLHHMVRNLMGTLFAIGKGELQPMDYLRILEAKDRTIAPPTASPDGLYFIN 289 Query: 244 VEYS 247 Y Sbjct: 290 AYYP 293 >gi|317492661|ref|ZP_07951088.1| tRNA pseudouridine synthase A [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919411|gb|EFV40743.1| tRNA pseudouridine synthase A [Enterobacteriaceae bacterium 9_2_54FAA] Length = 285 Score = 284 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y GWQRQ + S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 26 KIALGIEYDGSQYAGWQRQSDAPSVQECLEKALSKVACEPITVSCAGRTDAGVHATGQVV 85 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N ++ I++ + V + FHARFSA R Y Y I + Sbjct: 86 HFETHVARKDAAWTMGVNTHM--PKDIAVRWVKSVSEDFHARFSATARRYRYVIYNHRYR 143 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M A Q L+G +DFT+FR+ CQ+ +P R + H V G+ Sbjct: 144 QAVLQNGLTHFYHHLDAERMERAGQALLGENDFTSFRASQCQSRTPWRNVSHLKVTRLGD 203 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + + L A+DRK A GLY Sbjct: 204 YVIVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRKLAAATAKAAGLYLV 263 Query: 243 SVEYS 247 SV+Y Sbjct: 264 SVDYP 268 >gi|198283837|ref|YP_002220158.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666580|ref|YP_002426474.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248358|gb|ACH83951.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518793|gb|ACK79379.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 23270] Length = 271 Score = 284 bits (728), Expect = 7e-75, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +EY+G+G+ GWQRQ + S+QG +E A+ V + V AGRTD+GVHAL QV Sbjct: 10 TRWALGLEYDGNGFCGWQRQLDQDSVQGVVEAALSRVAQCPISVVVAGRTDTGVHALCQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P + N L +++ +V FHARFSA R Y Y I+ R+ Sbjct: 70 VHFDSPVLRRPEAWVRGANTAL--PAGVALRWARVVPDSFHARFSATARRYRYVILNRRE 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + I LD E M+ AAQ L+G HDF+ FR+ CQA SP+R + V G Sbjct: 128 KSALWRNHTAWIYSPLDVEAMQAAAQTLLGTHDFSAFRAAACQAKSPVRNLCQLRVVRRG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LI + A FLH +R+ VG L +G + L ++DR G APP GLYF Sbjct: 188 DLIAVDAEANGFLHHMVRNLVGVLIAIGKADRPVDWAAEVLASRDRCRAGVTAPPGGLYF 247 Query: 242 DSVEYS 247 + Y Sbjct: 248 VAPRYP 253 >gi|253689176|ref|YP_003018366.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755754|gb|ACT13830.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 283 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 24 KIALGIEYDGSQYYGWQRQSDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQVV 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + V++ FHARFSA R Y Y I + Sbjct: 84 HFTTQAIRKDAAWTMGVNANL--PPDIAVRWVKTVEEDFHARFSATARRYRYVIYNHRYR 141 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M A Q L+G +DFT+FR++ CQ+ +P R ++H V G+ Sbjct: 142 PAVLSHGMTHFYHPLDVDRMERAGQCLLGENDFTSFRAVQCQSRTPWRYVNHLKVTRHGD 201 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 202 YIVVDIKANAFVHHMVRNIVGSLMEVGCGNRPESWIAELLAAKDRTLAAATARAEGLYLV 261 Query: 243 SVEYS 247 +V+Y Sbjct: 262 AVDYP 266 >gi|312868117|ref|ZP_07728321.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis F0405] gi|322390938|ref|ZP_08064444.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis ATCC 903] gi|311096521|gb|EFQ54761.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis F0405] gi|321142313|gb|EFX37785.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis ATCC 903] Length = 248 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + + G V VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLTRLNQGTPVTVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I + + V+ FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQARDEEKLRFALDT--QTPEDIDFIRVEQVEDDFHSRYKKHSKTYEFIVDYG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD E M+ A Q L G HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDVEKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTITEARLVE 178 Query: 180 FGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ QIR+ VG+L +G+ + ++ L+ +DR GP A P Sbjct: 179 DAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNDRMPIEQIDLILEKKDRNLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|260856362|ref|YP_003230253.1| pseudouridylate synthase I [Escherichia coli O26:H11 str. 11368] gi|257755011|dbj|BAI26513.1| pseudouridylate synthase I [Escherichia coli O26:H11 str. 11368] gi|323156469|gb|EFZ42624.1| tRNA pseudouridine synthase A [Escherichia coli EPECa14] Length = 270 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVMRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTRAAATAKAEGLYLV 248 Query: 243 SVEYS 247 +V+Y Sbjct: 249 AVDYP 253 >gi|168180502|ref|ZP_02615166.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|182668817|gb|EDT80795.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] Length = 246 Score = 284 bits (727), Expect = 8e-75, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 139/248 (56%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + V+++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVNERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|306825673|ref|ZP_07459012.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432034|gb|EFM35011.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 261 Score = 284 bits (727), Expect = 8e-75, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G + VHGAGRTDSGVHAL Sbjct: 13 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGHAITVHGAGRTDSGVHALG 72 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL+ + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 73 QVIHFDLLYQMDEEKLRFALDT--QSPEDIDVISMELVADDFHCRYAKHSKTYEFIVDRG 130 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M++A + L G HDFT F + +RTI + V Sbjct: 131 RPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEANLTV 190 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 191 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 250 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 251 GLYLKEIRYE 260 >gi|168705501|ref|ZP_02737778.1| tRNA pseudouridine synthase A [Gemmata obscuriglobus UQM 2246] Length = 263 Score = 284 bits (727), Expect = 8e-75, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 135/248 (54%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 M +II Y+G+ +FGWQ Q ++Q ++EKAI +T E V ++ +GRTDSGVHA+ Sbjct: 1 MRNLKLIIRYDGTDFFGWQTQPGRRTVQETVEKAIAEITREPRVRLNCSGRTDSGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+ + +L KA+NA L + + + ++ + F A A+R+ Y Y + Sbjct: 61 QVANVYTASKLSCAVLLKAINAKL--PEDVGVREVTEAPQSFCANKDAVRKMYRYVVQDG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + AW + + L+ E M A++ LVGRHDF F + + +RTI H VN Sbjct: 119 RLQDPFLRKYAWFVRQHLNAEAMARASRCLVGRHDFRCFETEWPNRLTSVRTITHLSVNR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG I I V A FL+ +R+ GSL VG G W T + L A DR+ GP APPEGL Sbjct: 179 FGECIWIDVEANGFLYNMVRAIAGSLVQVGRGFWPETQIADVLHAMDRRLAGPTAPPEGL 238 Query: 240 YFDSVEYS 247 + V Y Sbjct: 239 FLMRVTYP 246 >gi|222475190|ref|YP_002563606.1| tRNA pseudouridylate synthase A (truA) [Anaplasma marginale str. Florida] gi|254995027|ref|ZP_05277217.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Mississippi] gi|255003171|ref|ZP_05278135.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Puerto Rico] gi|255004302|ref|ZP_05279103.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Virginia] gi|254789601|sp|B9KIN8|TRUA_ANAMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222419327|gb|ACM49350.1| tRNA pseudouridylate synthase A (truA) [Anaplasma marginale str. Florida] Length = 247 Score = 284 bits (727), Expect = 9e-75, Method: Composition-based stats. Identities = 113/248 (45%), Positives = 158/248 (63%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQHVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ SD +SIL+L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLR-SDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L+ +M+ AA H+VG DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|227824316|ref|ZP_03989148.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21] gi|226904815|gb|EEH90733.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21] Length = 253 Score = 284 bits (727), Expect = 9e-75, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 124/249 (49%), Gaps = 4/249 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + ++ Y+G+ Y G+QRQK+ G +Q +EKA+ E + + AGRTD+GVHAL Sbjct: 1 MKKTIMAVVAYDGTNYQGFQRQKDYGVGVQQVLEKALSTALHEDISIKAAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F+ P +AL L I+I I FHARF A+ ++Y Y ++ Sbjct: 61 GQVISFETSSPIPPENYRRALQHLL--PPDIAIREAFIKPDGFHARFDALDKTYRYTVLY 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P + AW + SL M AA LVG HDF++F++ + +SP+RT+ Sbjct: 119 APLPDPCARRYAWEVRSSLTLAAMNEAAALLVGTHDFSSFKNQGSEKTSPVRTLYEAYWT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + FL+ +R+ VG L VG G+WT D + A+DRK+ G AP G Sbjct: 179 QEKERFTFTIRGDGFLYRMVRNIVGCLVKVGTGEWTVADFAAVMAAKDRKKAGVAAPACG 238 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 239 LSLVHVSYP 247 >gi|123441645|ref|YP_001005630.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088606|emb|CAL11401.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 280 Score = 284 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 20 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQVV 79 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF E +N++L I++ + VD FHARFSA R Y Y I + Sbjct: 80 HFITTAERKDAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRYR 137 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V G Sbjct: 138 PAVLAQGVTHCYMPLDAEKMAQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRHGA 197 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 198 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLYLV 257 Query: 243 SVEYS 247 SV+Y Sbjct: 258 SVDYP 262 >gi|304398239|ref|ZP_07380113.1| tRNA pseudouridine synthase A [Pantoea sp. aB] gi|304354105|gb|EFM18478.1| tRNA pseudouridine synthase A [Pantoea sp. aB] Length = 267 Score = 284 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +E+A+ V V + AGRTD+GVH QV Sbjct: 7 QKLALGIEYDGSRYYGWQRQNEVRSVQEKVERALSKVADHPVSIFCAGRTDAGVHGTGQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V +FHARFSA R Y Y I ++ Sbjct: 67 VHFETTSQRPDGAWTLGVNANL--PPDIAVRWVKAVPDEFHARFSATARRYRYLIYNQRL 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 125 RPAVLAQGVTHFYHPLDAEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVIHLNVTRQG 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + L A+DR A EGLY Sbjct: 185 PYVIVDIKANAFVHHMVRNIVGSLMEIGCGNKPESWMATLLAAKDRTLAAATARAEGLYL 244 Query: 242 DSVEYS 247 +V+Y Sbjct: 245 VAVDYP 250 >gi|16801808|ref|NP_472076.1| tRNA pseudouridine synthase A [Listeria innocua Clip11262] gi|24212565|sp|Q927P1|TRUA_LISIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16415283|emb|CAC97973.1| truA [Listeria innocua Clip11262] gi|313616961|gb|EFR89587.1| tRNA pseudouridine synthase A [Listeria innocua FSL S4-378] Length = 248 Score = 284 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG+FG+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y I Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEAPADFHARFGTVGKEYRYVIKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M+ A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDIAKMKQASERLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A DR K APP+ Sbjct: 179 EDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|148258520|ref|YP_001243105.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. BTAi1] gi|166228680|sp|A5ESQ5|TRUA_BRASB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146410693|gb|ABQ39199.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. BTAi1] Length = 245 Score = 284 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 123/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q+ S+QG++E A+ G VHG+GRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFCGWQLQETLPSVQGALEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P L ALNA+L+ + +++L IV F ARFSA +R Y YRI+ R+ Sbjct: 61 VAHCDIAKDFRPDKLRDALNAHLR-PNPVAVLEAEIVSDTFEARFSARKRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE GR W +P+ LD + M AAQ L+GRHDFTTFR CQA SP +T+D DV Sbjct: 120 SNLALEVGRVWRVPQRLDSDAMHAAAQRLIGRHDFTTFRDTECQAKSPEKTLDQLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W++ DL AL A++R CG +APPEGLY Sbjct: 180 GDAVTILTSARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARNRAACGVVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|332524310|ref|ZP_08400532.1| tRNA pseudouridine synthase A [Rubrivivax benzoatilyticus JA2] gi|332107641|gb|EGJ08865.1| tRNA pseudouridine synthase A [Rubrivivax benzoatilyticus JA2] Length = 274 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y G+ Y GWQ Q +G ++Q +E+A+ V AGRTD+GVHA QV Sbjct: 16 RIALGIAYRGARYHGWQSQPDGRTVQDVLERALGQFAATPVGTLCAGRTDAGVHAFNQVV 75 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD E + N YL D +++ VD +FHAR SA R Y + I+ Sbjct: 76 HFDAPVERDEFSWVRGTNRYL--PDDVAVQWCRRVDARFHARNSAQGRRYRFVILEAPVR 133 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+E G + + LD + MR AA HL+G HDF++FR+ CQA +P++T+ V G Sbjct: 134 PAIEAGACGWVFRPLDGDAMRAAAAHLIGEHDFSSFRAAGCQALTPVKTMRSIGVERRGA 193 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I A +FLH +R+ VG L VG G+ + + L A+ R P PP+GLYF Sbjct: 194 YWRIEFDASAFLHHMVRNIVGCLVTVGSGRQRPEWMAEVLAARSRDAAAPTFPPDGLYFV 253 Query: 243 SVEYS 247 Y Sbjct: 254 GPYYD 258 >gi|153839728|ref|ZP_01992395.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] gi|149746752|gb|EDM57740.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] Length = 246 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 123/233 (52%), Gaps = 2/233 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVNRKMVAWTMGANANM--PSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATA 231 >gi|331007056|ref|ZP_08330287.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC1989] gi|330419141|gb|EGG93576.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC1989] Length = 286 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 137/248 (55%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY G + G+Q Q + ++Q ++E A+ LV E + + AGRTD+GVHA Sbjct: 24 MQRVALGIEYAGHVFHGFQSQPHDEKTVQSALENALSLVANEPIKLVCAGRTDAGVHATN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+ HFD + + + NA L D ++I V FH+RFSA R+Y Y I Sbjct: 84 QIVHFDTLAKRKDTAWLRGANAKL--PDGVAIRWAQDVSCDFHSRFSAKHRTYRYVIYNS 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL K +SLD + M A+Q LVGRHDF FR+ CQA++ IR + + V+ Sbjct: 142 RTHSALLKNFVTWDRRSLDIDAMAEASQALVGRHDFNAFRASQCQANNAIRDMHYIKVHR 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I I V A +FL+ +R+ VG L + G+ + ++ L+++DR+ G A P+GL Sbjct: 202 QNDFIVIEVQATAFLYHMVRNIVGVLSTIAAGEKPVSWAKEVLESKDRRCGGITASPDGL 261 Query: 240 YFDSVEYS 247 Y +VEY Sbjct: 262 YLVAVEYD 269 >gi|302385211|ref|YP_003821033.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] gi|302195839|gb|ADL03410.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] Length = 248 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 143/246 (58%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y M++EY+GS Y GWQ+Q N +IQG IE+ + +TG+ V VHG+GRTD+GVHAL QV Sbjct: 4 NYRMVLEYDGSRYDGWQKQGNTEQTIQGKIEQVLERMTGQAVEVHGSGRTDAGVHALAQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + + + LN YL + I ++ L ++FH+R +A ++YLYRI + Sbjct: 64 ANFHMDGKMASKEIQEYLNQYL--PEDIRVITLEPAKERFHSRLNAQEKTYLYRIEMGER 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E+ + + KSL+ E M A+ +L G HDF +F S S +R + + G Sbjct: 122 KQVFERKYIYGLYKSLNVEAMERASAYLTGEHDFKSFCSNRKMKKSTVRVLKEIEFEQQG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + IR FL+ +R G+L VG G+ + D++ L+A+DR + G APPEGL+ Sbjct: 182 SRLLIRYTGNGFLYNMVRIITGTLIEVGLGQRKAEDMKGILEAKDRNQAGFTAPPEGLFL 241 Query: 242 DSVEYS 247 + V Y+ Sbjct: 242 EQVRYN 247 >gi|87200906|ref|YP_498163.1| tRNA pseudouridine synthase A [Novosphingobium aromaticivorans DSM 12444] gi|87136587|gb|ABD27329.1| tRNA pseudouridine synthase A [Novosphingobium aromaticivorans DSM 12444] Length = 254 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +E+NG Y G+QRQ +G S+Q ++E+A+ VTGE V ++ AGRTD+GVHAL Sbjct: 6 TRFALTLEWNGGPYMGFQRQSHGPSVQQAVEEAVHSVTGEAVALNAAGRTDTGVHALGMR 65 Query: 62 AHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFDL R + P + +ALNA L+++ +++L+ V +HARFS R+Y YRII R+ Sbjct: 66 AHFDLSRAFDPFRMMEALNARLRLAGHPVAVLDCIEVAPDWHARFSCTGRAYEYRIINRR 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L+ GRAW I K LD M AAQ LVG HDFTTFRS+HCQ++SP++T+D DV Sbjct: 126 APLTLDLGRAWRIAKPLDETVMHEAAQLLVGHHDFTTFRSVHCQSASPLKTLDRLDVRRD 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + ARSFLH Q+RS VG L LVG G+W+ L +AL A+DR G APPEGLY Sbjct: 186 GDRVIVEAAARSFLHHQVRSMVGCLALVGQGQWSVAQLGEALAAKDRSRLGLNAPPEGLY 245 Query: 241 FDSVEYS 247 F S +Y Sbjct: 246 FVSAQYP 252 >gi|195978825|ref|YP_002124069.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689837|sp|B4U545|TRUA_STREM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|195975530|gb|ACG63056.1| tRNA pseudouridine synthase A TruA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 249 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAG TD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGITDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L I FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEIAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|313622273|gb|EFR92777.1| tRNA pseudouridine synthase A [Listeria innocua FSL J1-023] Length = 248 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG+FG+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF I + Y Y I Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEAQADFHARFGTIGKEYRYVIKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E M+ A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDIEKMKQASERLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A DR K APP+ Sbjct: 179 EDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|146276554|ref|YP_001166713.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025] gi|166228756|sp|A4WPU4|TRUA_RHOS5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145554795|gb|ABP69408.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025] Length = 257 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 121/251 (48%), Positives = 164/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQAVLPSVQGAIEAALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L ALNA+LK ++++ + V + FHARFSAI R YL+R++ R+ Sbjct: 61 VAHCDLGKDWDPFRLAGALNAHLK-PLPVAVVAAARVGEDFHARFSAIERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 AP ++GR W +P LD MR AA HLVGRHDFTTFR+I CQA+SP++T+D + Sbjct: 120 APEVHDRGRVWRVPHPLDGAAMREAAAHLVGRHDFTTFRAIGCQAASPVKTLDELTLETV 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G R+ ARSFLH Q+RS VG+L+ VG G W +++AL+A+DR CGP+ PP Sbjct: 180 EVPNGVEYRFRLRARSFLHNQVRSIVGTLERVGAGAWAPDRVKEALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLTGVGYP 250 >gi|300724021|ref|YP_003713336.1| pseudouridylate synthase I [Xenorhabdus nematophila ATCC 19061] gi|297630553|emb|CBJ91218.1| pseudouridylate synthase I [Xenorhabdus nematophila ATCC 19061] Length = 281 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 16 VKIALGIEYDGSRYYGWQRQQEVRSVQECLEKALSQVANEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N +L I++ + VD +FHARFSA R Y Y I + Sbjct: 76 VHFETSAQRKDAAWTMGVNTHL--PSNIAVRWIKTVDDEFHARFSATARRYRYVIFNHRY 133 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ L+G +DFT+FR++ CQ++SP R + H +V+ G Sbjct: 134 RPAVLAQGIMHFHSPLDEKKMHEAAQSLLGENDFTSFRAVQCQSNSPWRNMMHINVSRHG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +F+H +R+ VGSL +G G + + L +DR + A +GLY Sbjct: 194 HYIVVDIKANAFVHHMVRNIVGSLLEIGCGNQNIGWMAELLTLKDRTKAAATAKADGLYL 253 Query: 242 DSVEYS 247 +V+Y Sbjct: 254 VAVDYP 259 >gi|257417873|ref|ZP_05594867.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|257159701|gb|EEU89661.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] Length = 246 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE++ + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGELIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|313636153|gb|EFS02014.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL S4-171] Length = 248 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRFKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKALQVM--TPFDISFLIVEEAPADFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P L+ E M++A++ LVG HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ KAL A+DR K APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|27383218|ref|NP_774747.1| tRNA pseudouridine synthase A [Bradyrhizobium japonicum USDA 110] gi|27356392|dbj|BAC53372.1| tRNA pseudouridine synthase I [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ +FGWQ Q S+QG++E A+ +TG + VHGAGRTD+GVHA Q Sbjct: 8 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P LNA+L+ I++L IV F ARFSA++R Y YRI+ + Sbjct: 68 VAHVDIEKQFPPGRFRDGLNAHLR-PHPIAVLEAEIVPDTFEARFSAVKRHYRYRIVNTR 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G AW +P+ LD + M AA+ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 127 ANLALDIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSPEKTLDQLDVLRD 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH+Q+RS VGSL VG+G+WT+ DL AL A++R CG +APP+GLY Sbjct: 187 GREITIITSARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLY 246 Query: 241 FDSVEY 246 V+Y Sbjct: 247 LVKVDY 252 >gi|256854698|ref|ZP_05560062.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|256710258|gb|EEU25302.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] Length = 246 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGASETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|318606505|emb|CBY28003.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica Y11] Length = 280 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 20 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQVV 79 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF E +N++L I++ + VD FHARFSA R Y Y I + Sbjct: 80 HFITTAERKNAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRYR 137 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V G Sbjct: 138 PAVLAQGVTHCYMPLDAEKMEQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRHGA 197 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 198 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLYLV 257 Query: 243 SVEYS 247 SV+Y Sbjct: 258 SVDYP 262 >gi|332970287|gb|EGK09279.1| tRNA pseudouridine synthase A [Kingella kingae ATCC 23330] Length = 265 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 89/253 (35%), Positives = 137/253 (54%), Gaps = 8/253 (3%) Query: 1 MI-----RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M+ R+ + + Y+GS +FGWQ+Q +G ++Q ++E A+ + GE + AGRTD+G Sbjct: 1 MMQPQTQRFALTVSYDGSQFFGWQKQADGVVTVQAALEHALSCIAGEPIATIAAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA Q+ HFD + +NA+L D +++L V+ FHARF A R Y Y Sbjct: 61 VHATGQIVHFDTQAHRPLSAWVRGVNAHL--PDGVAVLAAQAVEPAFHARFDATGRRYRY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + L RA +L+ + M+ A L+G HDF++FR+ CQA SPI+T+ Sbjct: 119 LLESAPVRSPLLYRRAGWTHYALNTDPMQAAMNLLLGEHDFSSFRAAQCQAKSPIKTMYA 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G LI++ A +FLH +R+ VG+L VG G+ + D L + R P Sbjct: 179 AQLQRAGCLIKLDFHANAFLHHMVRNLVGALVYVGCGRLSVADFADLLAQKSRLTAPPTF 238 Query: 235 PPEGLYFDSVEYS 247 P+GLYF V+Y Sbjct: 239 MPDGLYFVGVDYP 251 >gi|281412654|ref|YP_003346733.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10] gi|281373757|gb|ADA67319.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10] Length = 245 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 126/246 (51%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR AA++L G HDFT+F P+RTI + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAAKYLEGTHDFTSF-KTGSDERDPVRTIYRIRILR 177 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP G Sbjct: 178 LKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|289435864|ref|YP_003465736.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172108|emb|CBH28654.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 248 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q + ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPDTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKALQVM--TPFDISFLIVEEAPADFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-N 178 + + A P L+ E M++A++ LVG HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ KAL A+DR K APP+ Sbjct: 179 EEDDTLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|315640131|ref|ZP_07895253.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] gi|315484108|gb|EFU74582.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] Length = 248 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY II Y+G+ + G+QRQ G ++Q +E+ + + + +VVHG+GRTD+ VHAL Q Sbjct: 3 MVRYKAIIAYDGTLFHGFQRQPQGRTVQEELERTLSKMASQPIVVHGSGRTDAHVHALGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD +E + A++ + + I++ + IVD+ FHAR+ + Y + + + Sbjct: 63 VIHFDYPKERPLEKMRFAMDT--QTPEDIAVKQVEIVDELFHARYLVQEKVYEFHVQIGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A P LD + A L+G HDF+ F + +RTI + Sbjct: 121 PRSPFRRHYASYYPYPLDLAKIERALPDLLGTHDFSAFCASGSSVEDKVRTIYEATMVHD 180 Query: 181 G--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + FL+ IR VG+L +G+G+ T L K + ++DR GP A PEG Sbjct: 181 EALSELVFTFRGDGFLYKMIRILVGTLLKIGNGRLEETSLPKIIASKDRNCAGPTAHPEG 240 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 241 LYLKEVKY 248 >gi|168186842|ref|ZP_02621477.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] gi|169295253|gb|EDS77386.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] Length = 245 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+G+ Y GWQ+ N ++IQ IE + + GE V + +GRTD+GVHA Sbjct: 1 MRNIKLTIQYDGTRYKGWQKLGNNDTTIQHKIESVLNELLGEKVSLMASGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + K L YL I + +++ FH+R++ + Y YRI Sbjct: 61 QVANFKTDSEISNDEIFKYLYKYL--PQDIVVTSVNNASDNFHSRYNVKEKVYTYRIHNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ I + LD + M+ A++ +G HDF +F ++ + S ++ I+ Sbjct: 119 EVHDVFTRKYSYHIKEKLDLKKMKEASKLFIGEHDFKSFTALKSKKKSTVKAINSITFRK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N IEI FL+ IR VG+L G K + +++ + +DR AP GL Sbjct: 179 KENDIEIVFSGNGFLYKMIRILVGTLIQAGLNKISLDEIQNIMDKKDRNIAPETAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 TLTEVKY 245 >gi|330810793|ref|YP_004355255.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378901|gb|AEA70251.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 284 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EYNGS Y GWQRQ +G ++Q ++E A+ V V +H AGRTD+GVHA QV Sbjct: 18 RIALGVEYNGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLHCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQVERSMKAWVMGANINL--PHDVSVSWAKVMPAHFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQ+LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 136 RPAHLNEEITWNHRPLDVERMAEAAQYLVGVHDFSAFRAGQCQAKSPIKELHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +FLH +R+ G L +G G+ +++ L ++ R+ G A P GLY Sbjct: 196 KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERPVEWIKEVLDSRIRRSGGVTAHPFGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|192289057|ref|YP_001989662.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1] gi|192282806|gb|ACE99186.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1] Length = 245 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 127/246 (51%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPALPSVQGALEVAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+L+ + +++L IV F ARFSA+RR Y YRI R+ Sbjct: 61 VAHVDIPKPFRADKLRDALNAHLR-PNPVAVLAAEIVPDTFEARFSAVRRHYRYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALDLGKVWRVPKQLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 180 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LMQVDY 245 >gi|269468479|gb|EEZ80140.1| pseudouridylate synthase [uncultured SUP05 cluster bacterium] Length = 247 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E+A+ V V V +GRTD+GVHAL Q Sbjct: 1 MKLALGVEYLGTNFHGWQLQKSGIRTVQQVVEQALSSVADHPVRVFCSGRTDAGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + N L ++ V+ FHARF A R Y Y+I Sbjct: 61 VIHFETTAKREDKAWVLGGNVNL--PFDVNFKWAKQVNDDFHARFDAHARQYHYKIHNTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A++ ++LD + M AA+ L+G HDF++FR CQA SPI+T++ + Sbjct: 119 VRSAVKHAYTLWESRTLDIKLMNQAAECLIGEHDFSSFRGSLCQAKSPIKTVEFIRLTQS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I + + A +FLH +R+ VG+L VG G+ S ++ L A+DRK+ G A P+GLY Sbjct: 179 GNGILLDIKANAFLHHMVRNIVGTLIKVGKGEQDSAWVKTVLDAKDRKQAGVTAEPQGLY 238 Query: 241 FDSVEYS 247 F Y Sbjct: 239 FVKAFYD 245 >gi|88608581|ref|YP_505923.1| tRNA pseudouridine synthase A [Neorickettsia sennetsu str. Miyayama] gi|123763741|sp|Q2GF33|TRUA_NEOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88600750|gb|ABD46218.1| tRNA pseudouridine synthase A [Neorickettsia sennetsu str. Miyayama] Length = 243 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 107/246 (43%), Positives = 153/246 (62%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I+EY G+G+ GWQ+Q + S+Q +E + + E + V+ AGRTD+GVHAL QV Sbjct: 1 MRYKAIVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQV 60 Query: 62 AHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P + A+N +LK I +L + IVD+ F ARFSAIRR Y Y+I R+ Sbjct: 61 FHFDARESTLQPFQIVNAVNYHLKE-KLIVLLKIEIVDETFDARFSAIRRHYQYKITNRK 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PLA+ K R+W +P++L+ + +R AQ+LVG+HDF +FRS C AS+ IRT+D +V Sbjct: 120 TPLAVFKNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCGASNAIRTLDRLEVEKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A+SFLH Q+R VG+L + GK + + L ++R+ GP APP GLY Sbjct: 180 GEEMIFHASAKSFLHHQVRIMVGTLVAIASGKL--MSVTEILSKKNRRYAGPTAPPCGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LLKVDY 243 >gi|116627085|ref|YP_819704.1| tRNA pseudouridine synthase A [Streptococcus thermophilus LMD-9] gi|122268312|sp|Q03MR4|TRUA_STRTD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116100362|gb|ABJ65508.1| Pseudouridylate synthase [Streptococcus thermophilus LMD-9] Length = 248 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGIPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L M+ AA LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ Q+R+ VG+L +G+G+ + + L+++DR GP Sbjct: 179 DEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQAKTVLESRDRNLAGPTVAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|306829107|ref|ZP_07462297.1| tRNA pseudouridine synthase A [Streptococcus mitis ATCC 6249] gi|304428193|gb|EFM31283.1| tRNA pseudouridine synthase A [Streptococcus mitis ATCC 6249] Length = 249 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++ + IV FH R++ + Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVILIEIVADDFHCRYAKHSKIYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVENKVRTITEASLTV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMLVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|258646098|ref|ZP_05733567.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] gi|260403476|gb|EEW97023.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] Length = 265 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 113/246 (45%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y G+ Y G+QRQ+N ++Q +E A+ +TG ++ A RTD+GVHA Q Sbjct: 1 MRNIRITLAYEGTAYSGFQRQENSITVQEILETALQKLTGTKTTLYFAARTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F ALN L I + V F R + ++Y Y + + Sbjct: 61 ECTFYTESSIPGDRFIFALNILL--PPDIRVTESREVPYDFSVRRNNYGKTYGYLLTEEK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K W + LD M AA+ L G HDFT+FR + +SP+RTI + Sbjct: 119 DCPPFFKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSFRGNNSVPASPVRTIHDIRIIKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I V FL+ +R+ G+L G GK T DL + L+A+DRK G AP GL Sbjct: 179 HHFFHIFVTGEGFLYHMVRNIAGALADAGTGKLTPKDLREILEAKDRKFLGATAPAHGLC 238 Query: 241 FDSVEY 246 V + Sbjct: 239 LLKVYF 244 >gi|228950979|ref|ZP_04113100.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808706|gb|EEM55204.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 250 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNLFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|146337887|ref|YP_001202935.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. ORS278] gi|166228681|sp|A4YLC1|TRUA_BRASO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146190693|emb|CAL74697.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Bradyrhizobium sp. ORS278] Length = 245 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 123/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q+ S+QG +E A+ G VHG+GRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQETLPSVQGVLEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +E+ P L ALNA+L+ + +++L+ IV F ARFSA +R Y YRI+ R+ Sbjct: 61 VAHCDIDKEFRPDKLRDALNAHLR-PNPVAVLDAQIVPDTFEARFSARKRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE GR W +P+ LD + M +AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 SNLALEVGRVWRVPQRLDSDAMHVAAQRLIGKHDFTTFRDTECQAKSPEKTLDQLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W++ DL AL A+ R CG +APPEGLY Sbjct: 180 GDAVTIITSARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARRRAACGVVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|206562845|ref|YP_002233608.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia J2315] gi|198038885|emb|CAR54847.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia J2315] Length = 271 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELEREVFSWVRGTNAFL--PPTVSVQWAKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA I LD + MR AA +L+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWIHTPLDDDAMRAAAAYLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 GHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAHVGYP 245 >gi|312277540|gb|ADQ62197.1| tRNA pseudouridine synthase A [Streptococcus thermophilus ND03] Length = 248 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLSQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L M+ AA LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ Q+R+ VG+L +G+G+ + + L+++DR GP Sbjct: 179 DEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQAKTVLESRDRNLAGPTVAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|256852067|ref|ZP_05557454.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 27-2-CHN] gi|260661364|ref|ZP_05862277.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 115-3-CHN] gi|256615479|gb|EEU20669.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 27-2-CHN] gi|260547819|gb|EEX23796.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 115-3-CHN] Length = 262 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 132/251 (52%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + ALN+ + I + IV++ FH ++S + Y Y + Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSMM--PTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 + ++ P L+ M+ AA L+G HDFT+F + Q +RTI + + Sbjct: 119 DRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIW 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 S N I + FL+ +R VG+L +G+ + DL++ + A+DR+E AP Sbjct: 179 QKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVINTAPA 238 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 239 SGLYLYHVFYE 249 >gi|228956904|ref|ZP_04118685.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802747|gb|EEM49583.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 250 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGVRFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|39997968|ref|NP_953919.1| tRNA pseudouridine synthase A [Geobacter sulfurreducens PCA] gi|42559718|sp|P60350|TRUA_GEOSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39984913|gb|AAR36269.1| tRNA pseudouridine synthase A [Geobacter sulfurreducens PCA] gi|298506909|gb|ADI85632.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens KN400] Length = 244 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +I+EY+G+ Y GWQ Q NG SIQ +E A+ + E V + +GRTD+GVHA Sbjct: 1 MRTIKLILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLKEPVRLRASGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD R LNA L I++ + F+ RF+A + Y Y I + Sbjct: 61 VAAFDTDRSIPLRAFSDGLNALL--PPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + ++W + +L+ MR AA+HL G DF +FR+ C A + IR +D +++ Sbjct: 119 RRSPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCAARTTIRRVDAVEISDD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + V FL +R VG+L VG GK T + + + GP APP+GL Sbjct: 179 GEMLTVDVHGSGFLRNMVRIMVGTLVEVGRGKLTPEHVAQMVVCPGVVPAGPTAPPQGLC 238 Query: 241 FDSVEY 246 V + Sbjct: 239 LQKVRF 244 >gi|42559808|sp|Q89BP1|TRUA_BRAJA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 245 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ +FGWQ Q S+QG++E A+ +TG + VHGAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P LNA+L+ I++L IV F ARFSA++R Y YRI+ + Sbjct: 61 VAHVDIEKQFPPGRFRDGLNAHLR-PHPIAVLEAEIVPDTFEARFSAVKRHYRYRIVNTR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G AW +P+ LD + M AA+ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSPEKTLDQLDVLRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH+Q+RS VGSL VG+G+WT+ DL AL A++R CG +APP+GLY Sbjct: 180 GREITIITSARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|121998585|ref|YP_001003372.1| tRNA pseudouridine synthase A [Halorhodospira halophila SL1] gi|121589990|gb|ABM62570.1| tRNA pseudouridine synthase A [Halorhodospira halophila SL1] Length = 266 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++EY+G+G+ GWQRQ + S+Q ++E A+ + V V AGRTD+GVHA QV Sbjct: 8 QRIALVLEYDGTGFSGWQRQDDAPSVQEALEGAVSRIANHPVAVVCAGRTDAGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD NA L +T+S+ + VD FHAR+ A RR Y Y + R+A Sbjct: 68 VHFDTTASRPLHAWVLGTNAQL--PETVSVRSAHAVDADFHARYQAQRRGYRYVFLCRRA 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + R LD M AAQ LVG HDF+ FR+ CQA +R + DV+ G Sbjct: 126 RPALLRHRVAWTHHELDEGRMHRAAQALVGEHDFSAFRAAACQAPHAVREVYRLDVHRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ I + A +F+H +R+ G+L VG G+ L A DR G AP GLY Sbjct: 186 ELLFIDIEANAFVHHMVRNIAGTLMAVGTGEQPEHWPAGLLAAGDRTRSGMTAPAAGLYL 245 Query: 242 DSVEYS 247 V Y Sbjct: 246 TRVVYP 251 >gi|251781741|ref|YP_002996043.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390370|dbj|BAH80829.1| phosphomethylpyrimidine kinase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 249 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + + + V +HGAGRTD+GVHA Sbjct: 1 MTRYRATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASVQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPADIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVENKVRTITEATLVQ 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|225075428|ref|ZP_03718627.1| hypothetical protein NEIFLAOT_00433 [Neisseria flavescens NRL30031/H210] gi|224953246|gb|EEG34455.1| hypothetical protein NEIFLAOT_00433 [Neisseria flavescens NRL30031/H210] Length = 281 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + + Y+GS ++GWQ+Q ++Q ++E+A+ + GE + AGRTD+GVHA Sbjct: 12 MQRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVAGRTDTGVHATA 71 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +NA+L D +++L V FHARF A R Y Y + + Sbjct: 72 QVVHFDTSVSRPEQAWVRGVNAHL--PDGVAVLVAQKVAPHFHARFDAYGRHYRYLLESS 129 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GR LD MR AA L G HDF++FR+ CQA SP++T+ ++ Sbjct: 130 PVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPVKTLYSTKISG 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + +FLH +R+ +G+L VG G+ + + E A+ R + P +GL Sbjct: 190 TSRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKAPPTFMSDGL 249 Query: 240 YFDSVEYS 247 Y V+Y Sbjct: 250 YLTGVDYP 257 >gi|25010174|ref|NP_734569.1| tRNA pseudouridine synthase A [Streptococcus agalactiae NEM316] gi|77414646|ref|ZP_00790784.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 515] gi|42559816|sp|Q8E7Q5|TRUA_STRA3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|23094525|emb|CAD45744.1| Unknown [Streptococcus agalactiae NEM316] gi|77159310|gb|EAO70483.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 515] gi|319744038|gb|EFV96416.1| tRNA pseudouridine synthase A [Streptococcus agalactiae ATCC 13813] Length = 258 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|114798579|ref|YP_759245.1| tRNA pseudouridine synthase A [Hyphomonas neptunium ATCC 15444] gi|123028359|sp|Q0C4U8|TRUA_HYPNA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114738753|gb|ABI76878.1| tRNA pseudouridine synthase A [Hyphomonas neptunium ATCC 15444] Length = 247 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 114/247 (46%), Positives = 151/247 (61%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEYNG Y GW R ++QG++E A + G V V GAGRTD+GVHA Q Sbjct: 1 MPRYRLLIEYNGGPYQGWMRLPGLQTVQGALEAAAAQLDGGPVEVTGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R P + A+N +L+ I++L V++ FHARFSAI R Y Y +I R+ Sbjct: 61 VAHMDL-RVDRPNKVADAMNYHLR-PHPIAVLKADRVEEDFHARFSAIARHYRYIVINRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L ++G AW +P LD + M AAQ VG HDFTTFR CQA SP++T+ DV + Sbjct: 119 AHLTHDQGLAWRVPSRLDADKMHEAAQSFVGTHDFTTFRDSECQALSPVKTLTRLDVARY 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + IE A SF+H Q+RS VGSL VG G+ + L+A DR CGP+AP +GL+ Sbjct: 179 NDRIEFTCSAPSFIHRQVRSLVGSLVEVGRGRHPVKWAREILEAADRTRCGPVAPSDGLF 238 Query: 241 FDSVEYS 247 + V+Y Sbjct: 239 LERVDYP 245 >gi|149912589|ref|ZP_01901123.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149916040|ref|ZP_01904563.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149810114|gb|EDM69962.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149812995|gb|EDM72821.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] Length = 255 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 116/251 (46%), Positives = 164/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYDGAPFAGWQRQAEQPSVQGAIEAALARLEPGPHKIAAAGRTDAGVHGLAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLV++W P L A+N +LK + +++ + V + +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVKDWEPFKLMGAVNYHLKPAPV-AVVACAQVAEDWHARFSALERRYLFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P LE GR W +P+SLD MR A+HL+G+HDFTTFRS CQA SP++T+D ++ Sbjct: 120 PPETLEAGRVWRVPQSLDVAAMREGARHLLGKHDFTTFRSSICQAKSPVKTLDALEIEEA 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ PP Sbjct: 180 EGLGGPELRFHLSARSFLHNQVRSIVGTLERVGAGSWAPEDVKTALEAKDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLAGVGYP 250 >gi|116873964|ref|YP_850745.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466636|sp|A0ALT4|TRUA_LISW6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116742842|emb|CAK21966.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 248 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQIQPNARTVQAEIEKALKKMHKGKNVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSDLDITADKFQKALQVM--TPFDISFLTVDEAPADFHARFGTVGKEYRYIVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDIAKMKLASECLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + I FL+ +R G+L G G+ +S D+ +AL A+DR K APP+ Sbjct: 179 EDEETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISSEDITEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|126725547|ref|ZP_01741389.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2150] gi|126704751|gb|EBA03842.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2150] Length = 265 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 110/251 (43%), Positives = 155/251 (61%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ ++QG+IE AI + + AGRTD+GVHA+ Q Sbjct: 1 MPRYALKIEYHGAPFAGWQRQPELQTVQGAIEAAIRKLEAGNAGITAAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +A+N +LK ++I+ + VD FHARF A+ R YL+ ++ R+ Sbjct: 61 VAHVDMAKSWDLFRLTEAINHHLK-PLPVAIVACAQVDDDFHARFGALERQYLFSVVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++G W + + LD M+ A HL+GRHDFTTFRS CQA SP+RT+D + Sbjct: 120 SLAVHDQGLVWQVRQPLDLARMKEGAAHLLGRHDFTTFRSTKCQADSPVRTLDELSIREI 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G E + ARSFLH Q+RSFVG+L+ VG G ++ + L+A DR CGP+APP Sbjct: 180 ARPVGQEFEFTIRARSFLHNQVRSFVGTLEPVGAGWVHPNEVGEMLRAADRTACGPVAPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLKHVVYP 250 >gi|295093425|emb|CBK82516.1| pseudouridylate synthase I [Coprococcus sp. ART55/1] Length = 247 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ Y Y+G+ Y GW+ + N +++G IE + + V +HGAGRTD+GVHA Sbjct: 1 MVNYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLTRMVDAKVDIHGAGRTDAGVHARAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ L + P + LN YL I L++++ +FHAR +A + Y Y + Sbjct: 61 VANGRLETDKTPEEIKDYLNRYL--PADICALDVAVAGDRFHARLNATGKVYEYTLYVGA 118 Query: 121 APLALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ W +P+ +LD + M+ AA +LVG+HDF +F + S +RTI D+ Sbjct: 119 EKPVFDRNYVWCVPQGSALDVDVMKKAASYLVGKHDFRSFCGNNKMKKSTVRTIYDVDIV 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + +R FL +R G+L VG G ++ + + + DR+ GP APP G Sbjct: 179 KEGDYVRMRFHGNGFLQNMVRILTGTLVEVGYGNMSAEHIPEIIAGMDRQLAGPTAPPHG 238 Query: 239 LYFDSVEYS 247 L VEY Sbjct: 239 LCLMKVEYD 247 >gi|258592098|emb|CBE68403.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [NC10 bacterium 'Dutch sediment'] Length = 263 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+G+ Y GWQ Q ++IQG+++ A+ + G+ V V GAGRTD+GVHA Q Sbjct: 1 MTTFKLTIEYDGTDYHGWQVQPGMTTIQGTLQGAVARIVGKDVHVMGAGRTDAGVHAHGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA P +AL + L I + + +D FHA++SA + Y Y ++TR Sbjct: 61 VASLRTEFHHPPDTFRRALTSVL--PSDIVVTAVEEMDDDFHAQYSAQWKRYRYSLLTRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P A+E+ +P L + M +AA LVG HDF+ F++ H A SP+RT+ + Sbjct: 119 YPSAIERRYTLFVPYPLQTDAMAVAAGSLVGTHDFSAFQAAHSSAESPVRTVLVAEFRQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +VA FL IR +G+L +G G+ L + +DR + P GL Sbjct: 179 GDHLLFEIVADGFLRHMIRIIMGTLLDIGRGRLQVEALHIIREGRDRNQASKTISPHGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLEVGY 244 >gi|254796418|ref|YP_003081254.1| tRNA pseudouridine synthase A [Neorickettsia risticii str. Illinois] gi|254589655|gb|ACT69017.1| tRNA pseudouridine synthase A [Neorickettsia risticii str. Illinois] Length = 243 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 110/246 (44%), Positives = 147/246 (59%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY +EY G+G+ GWQ+Q + S+Q +E + + E + V+ AGRTD+GVHAL QV Sbjct: 1 MRYKATVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQV 60 Query: 62 AHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P + A+N +LK I +L + IVD+ F ARFSAIRR Y YRII R+ Sbjct: 61 FHFDARESTLQPFQIVNAVNYHLKE-KLIVLLKIEIVDETFDARFSAIRRHYQYRIINRK 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P A+ + R W +P L+ + MR AQHLVGRHDF +FRS C AS+ IRT+D +V Sbjct: 120 MPPAVFRNRCWHVPWKLNLDFMREQAQHLVGRHDFQSFRSSKCGASNAIRTLDRLEVEKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I A+SFLH Q+R VG+L + GK S + L ++R GP AP GLY Sbjct: 180 GEEIIFHASAKSFLHHQVRIMVGTLVAIASGKLVSA--TEILSKRNRCYAGPTAPSCGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LLKVDY 243 >gi|168187780|ref|ZP_02622415.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] gi|169294335|gb|EDS76468.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] Length = 246 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 137/248 (55%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++IEY+GS Y GWQ+QK+ ++Q IE+AIF +T + + + G RTD+GVHA Sbjct: 1 MKRNIKLVIEYDGSNYSGWQKQKHSMTVQQRIEEAIFDITKQNIEIIGCSRTDAGVHARN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + P A+N+ L I I V FHARF + + Y+Y I+ R Sbjct: 61 FVANFIIDSNIPPEKFKYAINSKL--PKDIVIKKSCEVPIDFHARFQSKGKKYVYTILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN 178 + P +++G + K LD + M+ A+++ +G H+F +F + S +RTI + DV Sbjct: 119 EEPPTIDRGVVYHFNKKLDVDLMKSASKYFIGSHEFDSFYKKAGSSVKSTLRTIYYCDVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++I+I V+ FL+ +R G+L VG + D++ + A+DR+ G PP+G Sbjct: 179 KVDDIIKIIVIGEGFLYNMVRIMAGTLVEVGITRIKPEDIKTIILAKDRERAGRSLPPQG 238 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 239 LCLEEVLY 246 >gi|76787537|ref|YP_328824.1| tRNA pseudouridine synthase A [Streptococcus agalactiae A909] gi|123602597|sp|Q3K3S9|TRUA_STRA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76562594|gb|ABA45178.1| tRNA pseudouridine synthase A [Streptococcus agalactiae A909] Length = 258 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMKEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|238022472|ref|ZP_04602898.1| hypothetical protein GCWU000324_02380 [Kingella oralis ATCC 51147] gi|237867086|gb|EEP68128.1| hypothetical protein GCWU000324_02380 [Kingella oralis ATCC 51147] Length = 260 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 133/248 (53%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + + YNGS +FG+Q+Q +IQ ++E A+ + GE V + AGRTD+GVHA Sbjct: 1 MTRYALTLSYNGSAFFGFQKQAAGIPTIQTALEHALAQIAGEPVAITAAGRTDTGVHATA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +NA+L D I++L+ V FHARF A R Y Y + + Sbjct: 61 QVVHFDSHATRPLTAWVRGVNAHL--PDGIAVLHAQAVAPDFHARFDACGRHYRYLLQSA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GRA LD M+ AA L+G HDF++FR+ CQA SP++T+ + Sbjct: 119 PVRSPLLVGRAGWTHYPLDMAAMQKAAALLLGEHDFSSFRAAECQAKSPVKTVYAIAFSG 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I+I A +FLH +R+ VG+L VG G+ + + AQ R P +GL Sbjct: 179 CPSFIKIDFHANAFLHHMVRNIVGALVYVGCGRLAVGEFAEMFAAQSRLTAPPTFMADGL 238 Query: 240 YFDSVEYS 247 YF V+Y Sbjct: 239 YFTGVDYP 246 >gi|241759308|ref|ZP_04757414.1| tRNA pseudouridine synthase A [Neisseria flavescens SK114] gi|241320444|gb|EER56741.1| tRNA pseudouridine synthase A [Neisseria flavescens SK114] Length = 270 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + + Y+GS ++GWQ+Q ++Q ++E+A+ + GE + AGRTD+GVHA Sbjct: 1 MQRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVAGRTDTGVHATA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +NA+L D +++L V FHARF A R Y Y + + Sbjct: 61 QVVHFDTSVSRPEQAWVRGVNAHL--PDGVAVLVAQKVAPHFHARFDAYGRHYRYLLESS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 119 PVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYRTSISG 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + +FLH +R+ +G+L VG G+ + + E A+ R + P +GL Sbjct: 179 TSRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKAPPTFMSDGL 238 Query: 240 YFDSVEYS 247 Y V+Y Sbjct: 239 YLTGVDYP 246 >gi|238917621|ref|YP_002931138.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238872981|gb|ACR72691.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 249 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y MII Y+G+ Y+GW+ Q +IQG +E + +TG V V GAGRTD+GVHA Sbjct: 1 MKNYKMIITYDGTRYYGWEHQPTTDMTIQGKLESVLSAMTGTEVEVIGAGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+ + + +C +N YL + I + + I +FH+R++A ++Y Y Sbjct: 61 MVANAHMETKMKEDDICDYMNRYL--PEDICVQEVRIASDRFHSRYNAQGKTYCYTCYVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + +I LD E M+ AA L G HD+ +F S +R I DV+ Sbjct: 119 DKKPVFNRKYVNIIEGKLDVEAMKKAADILTGEHDYASFCGNPKMKKSTVREIYSIDVSL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL +R G+L VG GK T + + L+ ++R G AP +GL Sbjct: 179 KGSFLNLTYHGSGFLQYMVRILSGTLLEVGQGKRTPESMYELLEERNRSLAGATAPAKGL 238 Query: 240 YFDSVEYS 247 V+YS Sbjct: 239 CLLKVDYS 246 >gi|70729445|ref|YP_259183.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf-5] gi|68343744|gb|AAY91350.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf-5] Length = 274 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 122/245 (49%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ S+Q ++EKA+ V VVV AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVPSVQETLEKALSRVADSPVVVSCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS+ + FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAVRSMKAWVMGANINL--PHDISVSWAKEMPAHFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA LVG HDF+ FR+ CQA SPI+ I H V G Sbjct: 126 RPAHLNEEITWNHRPLDIERMAQAAAFLVGTHDFSAFRAGQCQAKSPIKEIHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERPVEWAREVLESRIRRTGGVTAHPFGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|297205058|ref|ZP_06922454.1| tRNA-pseudouridine synthase I [Lactobacillus jensenii JV-V16] gi|297149636|gb|EFH29933.1| tRNA-pseudouridine synthase I [Lactobacillus jensenii JV-V16] Length = 262 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 132/251 (52%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + ALN+ + I + IV++ FH ++S + Y Y + Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSMM--PTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 + ++ P L+ M+ AA L+G HDFT+F + Q +RTI + + Sbjct: 119 DRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIW 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 S N I + FL+ +R VG+L +G+ + DL++ + A+DR+E AP Sbjct: 179 QKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVRNTAPA 238 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 239 SGLYLYHVFYE 249 >gi|326202743|ref|ZP_08192611.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] gi|325987327|gb|EGD48155.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] Length = 247 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y +I++Y+GS Y GWQ+ K+ SIQG IE + ++GE + V G GRTD+G HA Sbjct: 1 MKNYKIIVQYDGSKYKGWQKLKDSDLSIQGKIETVLSKMSGEEIQVIGCGRTDAGTHAEN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F P ++ L Y + I + ++ VD++FHA+ +A ++Y+Y I Sbjct: 61 YVANFHTNSRMSPKLILNHL--YEFLPQDIVVRSVEEVDERFHAQHNAKAKTYVYSITKG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ + LD M+ AA++L+G HDF +F S+ + S IRTI+ D+ Sbjct: 119 KFRNVFNRKYSFHSEEKLDLVQMKNAAEYLIGTHDFQSFTSLKEGSKSTIRTINSLDIIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +IEI + FL R VG+L VG K + D++K L + R E P+A P+GL Sbjct: 179 NGMVIEIIINGNDFLLHMARLVVGALLEVGKNKIKAIDVQKILNEKKRTEAVPMAQPKGL 238 Query: 240 YFDSVEYS 247 V+YS Sbjct: 239 CLRDVKYS 246 >gi|229825283|ref|ZP_04451352.1| hypothetical protein GCWU000182_00637 [Abiotrophia defectiva ATCC 49176] gi|229790655|gb|EEP26769.1| hypothetical protein GCWU000182_00637 [Abiotrophia defectiva ATCC 49176] Length = 249 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +++ Y+G+ Y G+Q Q +++G + A+ + GE +V+ GA RTD+GVHA Sbjct: 1 MKRFKLVVAYDGTAYCGYQYQPELPTVEGFVNDALSELLGENIVIIGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD L ALN L D I I+ V FH R + I ++Y YRI T + Sbjct: 61 VAVFDSDTRIPAEKLALALNTKLA--DDIRIMESLEVAADFHPRKNVIDKTYEYRINTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ ++ + +LD E MR AA+++ GRHDFT+F S +RT+ DV Sbjct: 119 ISFPTDRLYSYNVKHNLDIEAMREAAKYIEGRHDFTSFCSAKTDKEDKVRTVFQIDVEET 178 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + IRV FL+ +R G+L VG+GK + ++ ++ +DR G P +GL Sbjct: 179 LRSELIIRVRGDGFLYNMVRIIAGTLVKVGEGKISPNEIPSIIERKDRGHLGTTLPAKGL 238 Query: 240 YFDSVEY 246 + + Y Sbjct: 239 FLMGIRY 245 >gi|24378608|ref|NP_720563.1| tRNA pseudouridine synthase A [Streptococcus mutans UA159] gi|38258780|sp|Q8DWH1|TRUA_STRMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24376463|gb|AAN57869.1|AE014860_6 putative tRNA pseudouridine synthase A [Streptococcus mutans UA159] Length = 249 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 MIRY II Y+G+ + G+QRQ ++Q IEK + + +G+ V +HGAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLNSGQAVKIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L L+ + D I ++ + V FHAR+ R++Y + + Sbjct: 61 QVIHFDLPQQRDLEKLRFGLDT--QTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L + A P +D ++ A + L G HDFT F + + +RTI V Sbjct: 119 RPKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTASGTSVENKVRTISRATVEK 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ +++ L++ DR GP A Sbjct: 179 DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRSLAGPTAASN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYD 248 >gi|118444045|ref|YP_877232.1| tRNA pseudouridine synthase A [Clostridium novyi NT] gi|118134501|gb|ABK61545.1| tRNA pseudouridine synthase A [Clostridium novyi NT] Length = 246 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 138/245 (56%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 ++IEY+GS Y GWQ+QK+ +IQ IE+AIF +T + + V+G RTD+GVHA VA Sbjct: 4 NIKLVIEYDGSNYSGWQKQKHSMTIQQRIEEAIFDITKQKIEVNGCSRTDAGVHARNFVA 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + P A+N+ L I I N V FHARF + + Y+Y I+ R+ P Sbjct: 64 NFIIDSSIPPEKFKYAMNSKL--PKDIVIKNSCEVPMDFHARFQSKGKKYVYTILNREEP 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFG 181 +++G + K LD + MR A+++ +G H+F +F + S +RTI + DV Sbjct: 122 PTIDRGVVYHFNKKLDVDLMRSASKYFIGSHEFDSFYKKAGSSVKSTLRTIYYCDVTKVD 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I+I V+ FL+ +R G+L VG + D++ + A+DR++ G PP+GL Sbjct: 182 DIIKIIVIGEGFLYNMVRIIAGTLVEVGIARIKPEDIKNIILAKDREKAGRSLPPQGLCL 241 Query: 242 DSVEY 246 + V Y Sbjct: 242 EEVLY 246 >gi|152996062|ref|YP_001340897.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1] gi|150836986|gb|ABR70962.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1] Length = 274 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 4/249 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +++EYNGS Y GWQ QK S+Q ++EKA+ ++ V V AGRTDSGVHA Sbjct: 1 MTKKVVLVVEYNGSEYKGWQAQKFGVPSVQENLEKALAIIANHPVKVVCAGRTDSGVHAS 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HF+ E +N +L I+++ S V FHARFSA+ R Y Y I + Sbjct: 61 AQVVHFETDVERNERAWTLGVNTHL--PSDITVVAASPVSNDFHARFSALSRRYRYVIYS 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A+ K+LD M+ AA+ +G HDF++FR++ CQA +PIRTI +F+V+ Sbjct: 119 SDFCPAILSKGITWTYKNLDVSAMKEAAKVFLGTHDFSSFRAVGCQAKTPIRTILNFEVH 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I + V A +FLH IR+F G L +G G+ + ++ L+A+DR + G APP G Sbjct: 179 QLGQYIVLDVRANAFLHHMIRNFAGVLMSIGAGEKPVSWAKQTLEAKDRTKGGITAPPTG 238 Query: 239 LYFDSVEYS 247 LYF +Y Sbjct: 239 LYFVDAQYP 247 >gi|255067233|ref|ZP_05319088.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256] gi|255048601|gb|EET44065.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256] Length = 272 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q +E A+ + GE + AGRTD+GVHA Q Sbjct: 14 QRWALTLSYDGSRFYGWQKQADGLPTVQTVLESALSQIAGETIRTIVAGRTDTGVHATAQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NAYL + +++L V FHARF A R Y Y + + Sbjct: 74 VVHFDTQVARPEQAWVRGVNAYL--PEGVAVLFAQQVAPHFHARFDAYGRRYRYLLESSP 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +G+ LD E M+ AA L G HDF++FR++ CQA SP++T+ ++ Sbjct: 132 VRSPILQGKVGWTHLKLDPEKMQQAALLLEGEHDFSSFRAVECQAKSPVKTLYSAKISGT 191 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ + +FLH +R+ +G+L VG G+ + + + ++ + R + P P+GLY Sbjct: 192 PQFLKLDLHGNAFLHHMVRNIMGALVYVGSGRLSISGFQDLIEERSRLKAPPTFMPDGLY 251 Query: 241 FDSVEYS 247 V+Y Sbjct: 252 LTGVDYP 258 >gi|304320576|ref|YP_003854219.1| tRNA pseudouridine synthase A [Parvularcula bermudensis HTCC2503] gi|303299478|gb|ADM09077.1| tRNA pseudouridine synthase A [Parvularcula bermudensis HTCC2503] Length = 253 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 113/245 (46%), Positives = 152/245 (62%), Gaps = 1/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +E++G+ + GWQRQ NG S+QG+IE+A +T +GAGRTDSGVHA+ A Sbjct: 6 RYRIEVEFDGTPFVGWQRQDNGPSVQGAIEEAAARLTQAPGACYGAGRTDSGVHAIAMTA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H DL + P + LNAYL+ +SIL V FHARF RR YLYR++ R++P Sbjct: 66 HLDLAKALPPDNVRDGLNAYLR-PAPVSILLAQPVSPDFHARFQCHRRHYLYRLLDRRSP 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + R W + LD + M AA L+G+HDFTT+RS HCQA SP++T+ F+V G Sbjct: 125 PVLMRDRVWHVIAPLDVDAMAKAAHPLIGQHDFTTYRSAHCQAESPLKTLSQFEVTRVGQ 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + A SFLH Q+RS VG+L VG G+ + ALQA DR+ CGP+AP GLYF Sbjct: 185 EVHCALSAPSFLHNQVRSLVGTLVQVGLGRAALSQPYDALQACDRRACGPVAPAHGLYFV 244 Query: 243 SVEYS 247 +Y Sbjct: 245 KADYP 249 >gi|166033550|ref|ZP_02236379.1| hypothetical protein DORFOR_03276 [Dorea formicigenerans ATCC 27755] gi|166026735|gb|EDR45492.1| hypothetical protein DORFOR_03276 [Dorea formicigenerans ATCC 27755] Length = 266 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 80/267 (29%), Positives = 124/267 (46%), Gaps = 22/267 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +I+ + + I +TGE + + GA RTDSGVHAL Sbjct: 1 MRRIRIVVAYDGTNYCGWQIQPNGITIEEILNRQISKLTGEDIRIIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF-SAIRRSYLYRIITR 119 VA FD ALN + + I I+ V +H R+ + I ++Y Y I Sbjct: 61 VAVFDTESRIPGDRFAYALNQKM--PEDIVIVRSDEVQIDWHPRYQNEISKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + L+ + + LD E MR A++++G HDF +F ++ A +RT+ + Sbjct: 119 KVRNPLKNRYSTFVSFDLDVEKMRQGAKYILGEHDFASFCNVRTNAKDTVRTVHEITIKE 178 Query: 179 ------------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 I IRV FL+ +R G+L VG G + + Sbjct: 179 IPMDKFQASNWGQENSNLENEKEIVIRVTGNGFLYNMVRIIAGTLIRVGRGFYEPEKIRD 238 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 L+A++ G APP GL S++Y Sbjct: 239 ILEAKEHTSEGITAPPNGLVLVSIDYP 265 >gi|148270348|ref|YP_001244808.1| tRNA pseudouridine synthase ACD [Thermotoga petrophila RKU-1] gi|166229847|sp|A5IM09|TRUA_THEP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147735892|gb|ABQ47232.1| tRNA pseudouridine synthase A [Thermotoga petrophila RKU-1] Length = 245 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 126/246 (51%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYIQAAGRTDTGVHANGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIRNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR A ++L G HDFT+F P+RTI + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAVKYLEGTHDFTSF-KTGSDERDPVRTIYRIRILR 177 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP G Sbjct: 178 LKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|330962608|gb|EGH62868.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 274 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L IS+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSLKAWVMGANINL--PHDISVSWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA HLVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAAHLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWAREVLESKVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|292670303|ref|ZP_06603729.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541] gi|292648034|gb|EFF66006.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541] Length = 260 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 127/254 (50%), Gaps = 9/254 (3%) Query: 1 MIR-----YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M++ + I Y+G+ Y G+QRQ ++Q ++E A+ V GE V + AGRTD+G Sbjct: 1 MMKRRARNLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVCGETVELAAAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV +F L +A+N L I++ + + F AR SA ++Y+Y Sbjct: 61 VHACGQVVNFFTDGRIPTERLPRAVNGLL--PPDIAVTDAWEAARDFSARHSAKGKAYVY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R+ P + AW I + LD E MR A LVG HD+++FR+ SP+RTID Sbjct: 119 RMEQCTVPNPFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAAGGAPMSPVRTIDE 178 Query: 175 FDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G + + FL+ +R+ + ++ VG + + + A+DR+ P Sbjct: 179 IRLEDEGEGRLSCYLHGNGFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASPT 238 Query: 234 APPEGLYFDSVEYS 247 AP GLY V+Y Sbjct: 239 APACGLYLLHVDYD 252 >gi|284009291|emb|CBA76427.1| tRNA pseudouridine synthase A [Arsenophonus nasoniae] Length = 270 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 97/247 (39%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y+GWQRQ+ SIQ +E A+ V E + V AGRTD+GVHA Q Sbjct: 9 MFKIALGIEYDGSHYYGWQRQQQVKSIQACVESALTKVAHESIQVCCAGRTDAGVHATGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +N++L I++ V+ FHARFSA R Y Y I + Sbjct: 69 VIHFETSVIRKDSAWTMGVNSHL--PADIAVRWSKDVEPDFHARFSATARRYRYIIFNHR 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ LD E M IAAQ LVG DFT+FR+I CQ+ SP R I H VN + Sbjct: 127 YRPAILAAGVTHYHAPLDAEKMHIAAQALVGEQDFTSFRAIQCQSKSPWRNIKHVHVNRY 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + + A +F+H +R+ VGSL +G G + + L +DR + A EGLY Sbjct: 187 GDYIVVDIKANAFVHHMVRNIVGSLLAIGCGVQDINWIAELLALKDRTKAAATAKAEGLY 246 Query: 241 FDSVEYS 247 +V+Y Sbjct: 247 LVAVDYP 253 >gi|325129355|gb|EGC52190.1| tRNA pseudouridine synthase A [Neisseria meningitidis OX99.30304] Length = 265 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGEAVSTIVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESVP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|296115065|ref|ZP_06833707.1| tRNA pseudouridine synthase A [Gluconacetobacter hansenii ATCC 23769] gi|295978402|gb|EFG85138.1| tRNA pseudouridine synthase A [Gluconacetobacter hansenii ATCC 23769] Length = 283 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 117/250 (46%), Positives = 155/250 (62%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSS-IQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 R+ + IEY+G + GWQRQ +G + +QG +E A +TG V+ AGRTDSGVHA Sbjct: 29 RRWAVRIEYDGRDFVGWQRQASGLTSVQGVLEAAATRLTGGRPVISITAGRTDSGVHATG 88 Query: 60 QVAHFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH D + + ALN ++K ++IL V + ARFSAI RSY YRII Sbjct: 89 QVAHLDFPDDIPLSSTAVRDALNYHMK-PHRVAILIARPVLPNWSARFSAILRSYRYRII 147 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R A L++GR W + + LD + MR AAQ L+GRHDFTTFR+ CQA SP+RT+D D+ Sbjct: 148 NRSARPTLDEGRVWHVRQPLDVDLMRQAAQFLIGRHDFTTFRASACQAKSPVRTLDRLDI 207 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G I I AR+FLH Q+R+ G+LK+VG+G W+ + +AL A DR+ GP AP E Sbjct: 208 HREGEEIVIVTEARAFLHHQVRNMTGTLKMVGEGSWSVERVGQALAACDRRAGGPTAPAE 267 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 268 GLYLTGVAYP 277 >gi|269958752|ref|YP_003328539.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel] gi|269848581|gb|ACZ49225.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel] Length = 247 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 113/248 (45%), Positives = 157/248 (63%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQYVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ SD +SIL+L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLR-SDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L +M+ AA H+VG DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLSVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|226949212|ref|YP_002804303.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] gi|226843950|gb|ACO86616.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] Length = 246 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 137/248 (55%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+T E + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTREDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILTAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEYS 247 + SV+Y Sbjct: 239 FMTSVDYE 246 >gi|326795335|ref|YP_004313155.1| tRNA pseudouridine synthase A [Marinomonas mediterranea MMB-1] gi|326546099|gb|ADZ91319.1| tRNA pseudouridine synthase A [Marinomonas mediterranea MMB-1] Length = 270 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 137/246 (55%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EY+GS Y GWQ QK + ++Q +E A+ + V V AGRTD+GVHA QV Sbjct: 5 KVVLVVEYDGSRYKGWQAQKFDVDTVQEKLEYALSKIANHSVGVICAGRTDAGVHASSQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E +N +L IS++ + V +FHARFSA+ R Y Y I + Sbjct: 65 VHFETASERPIRAWTLGVNTHL--PPDISVVAANYVADEFHARFSALTRRYRYVIYQSEF 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ K L + M+ AA +G HDF+++R+I CQA SPIRT+ +F VN FG Sbjct: 123 RPAIMAKGVTWTYKDLSEQKMQQAAACFIGTHDFSSYRAIGCQARSPIRTVLNFSVNKFG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH IR+F G L +G G+ ++ L A+DR + G APP GLYF Sbjct: 183 QYIVLDIRANAFLHHMIRNFAGVLMAIGAGEKPVQWAKQVLDAKDRTQGGVTAPPHGLYF 242 Query: 242 DSVEYS 247 +Y Sbjct: 243 VDAQYP 248 >gi|21672480|ref|NP_660547.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091459|sp|Q8K9U4|TRUA_BUCAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21623097|gb|AAM67758.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 263 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 137/245 (55%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 ++ + +EY+GS Y GWQ QK S+IQ IEKA+ + V V AGRTDSGVH++ QV Sbjct: 8 KFALGVEYDGSYYHGWQSQKGLSTIQSEIEKALSKIANHQVNVICAGRTDSGVHSIGQVI 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF + +N+YL S IS+ + V + F+AR+SAI RSY Y I + Sbjct: 68 HFTSISFRSDFSWIVGVNSYL--SKNISVKWIKEVSENFNARYSAISRSYRYIIYNHKCR 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + R+ + K L+ + M AQ L+G HDF++FRS CQ+ SP RTI ++ N Sbjct: 126 SAIFRNRSNHVYKELNVDKMYFEAQSLLGEHDFSSFRSSGCQSRSPFRTITDLNIRRLKN 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ I + A SFL+ +R+ VGSL + D ++K L +DR GP GLY Sbjct: 186 LVIIDITANSFLYHMVRNIVGSLIQINDNTKK-NYIKKILDKKDRNYAGPTVSARGLYLF 244 Query: 243 SVEYS 247 V+Y Sbjct: 245 FVKYP 249 >gi|296877377|ref|ZP_06901416.1| tRNA-pseudouridine synthase I [Streptococcus parasanguinis ATCC 15912] gi|296431616|gb|EFH17424.1| tRNA-pseudouridine synthase I [Streptococcus parasanguinis ATCC 15912] Length = 251 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + + G V VHGAGRTDSGVHAL Sbjct: 4 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLTRLNQGTPVTVHGAGRTDSGVHALG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I + + V FH+R+ ++Y + + Sbjct: 64 QVIHFDLPQERDEEKLRFALDT--QTPEDIDFIRVEQVAADFHSRYKKHSKTYEFIVDYG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD E M+ A Q L G HDFT F + +RTI + Sbjct: 122 RPKNPMMRHYATHYPYPLDVEKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTITEARLVE 181 Query: 180 FGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ QIR+ VG+L +G+ + ++ L+ +DR GP A P Sbjct: 182 DAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNDRMPIEQIDLILEQKDRNLAGPTAAPN 241 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 242 GLYLKEIRYE 251 >gi|308187626|ref|YP_003931757.1| pseudouridylate synthase I [Pantoea vagans C9-1] gi|308058136|gb|ADO10308.1| pseudouridylate synthase I [Pantoea vagans C9-1] Length = 267 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +E+A+ V V + AGRTD+GVH QV Sbjct: 7 QKLALGIEYDGSRYYGWQRQNEVRSVQEKVERALSKVADHPVSIFCAGRTDAGVHGTGQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V +FHARFSA R Y Y I ++ Sbjct: 67 VHFETTSQRPDGAWTLGVNANL--PADIAVRWVKAVPDEFHARFSATARRYRYLIYNQRL 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 125 RPAVLAQGVTHFYHPLDAEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVIHLNVTRQG 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + L A+DR A EGLY Sbjct: 185 PYVIVDIKANAFVHHMVRNIVGSLMEIGCGNKPESWMATLLAAKDRTLAAATARAEGLYL 244 Query: 242 DSVEYS 247 +V+Y Sbjct: 245 VAVDYP 250 >gi|325133363|gb|EGC56028.1| tRNA pseudouridine synthase A [Neisseria meningitidis M13399] Length = 265 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGEAVSTIVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWIRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|40062661|gb|AAR37582.1| tRNA pseudouridine synthase A [uncultured marine bacterium 313] Length = 245 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 113/246 (45%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ QKNG SIQ ++ AIF + E VVV GAGRTDSGVHAL Q Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGQSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ +N ++ + +++L ++ K+FHARF A +R+Y Y II RQ Sbjct: 61 VAHFDLKKKIKKKSFLPGINQHIG-NKPVTVLKINKTSKKFHARFDAKKRTYQYTIINRQ 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL L+K +AW I K LD M+ A+ L+G HDF+TFR+ C A SPI+T+++ + Sbjct: 120 SPLTLQKNKAWHIRKKLDVRAMKKGAKLLLGTHDFSTFRASSCGAKSPIKTMENISIKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I ++ ++RSFL Q+RS VG +K +GDGKW D +K+ +++ R EC P AP GLY Sbjct: 180 KDKITLKFISRSFLQQQVRSMVGCIKYLGDGKWKLEDFKKSFKSKCRLECAPPAPASGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LAKIKY 245 >gi|261393361|emb|CAX50997.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I; tRNA pseudouridylate synthase I) [Neisseria meningitidis 8013] Length = 265 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|77409358|ref|ZP_00786059.1| tRNA pseudouridine synthase A [Streptococcus agalactiae COH1] gi|77172030|gb|EAO75198.1| tRNA pseudouridine synthase A [Streptococcus agalactiae COH1] Length = 258 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V+++GAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIYGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|325131279|gb|EGC53990.1| tRNA pseudouridine synthase A [Neisseria meningitidis M6190] gi|325137309|gb|EGC59897.1| tRNA pseudouridine synthase A [Neisseria meningitidis ES14902] gi|325139358|gb|EGC61898.1| tRNA pseudouridine synthase A [Neisseria meningitidis CU385] Length = 265 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|328957471|ref|YP_004374857.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] gi|328673795|gb|AEB29841.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] Length = 246 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M M IEY+G Y GWQR + +IQG IE + +TG + G+GRTD+G HA Sbjct: 1 MRNIKMTIEYDGGRYLGWQRLSDSDKTIQGKIENILTAMTGTKTEIIGSGRTDAGAHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + L V ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSTMEFPAMLDHLNRYL--PRDIVVKKLEEVPERFHARYNASGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ ++ P LD + M A LVG HDF F S+ S +RTID ++ Sbjct: 119 SIPSVFDRNFSYDFPGELDIDKMNEACNKLVGTHDFIGFSSLKKSKKSTVRTIDEIKIHK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ FL+ IR +G+L +G G + ++ ++ R + G P +GL Sbjct: 179 EGDLLHFTFKGEGFLYKMIRIIMGTLLEIGSGMADPSSIDAIFKSGIRSDAGMTVPSQGL 238 Query: 240 YFDSVEYS 247 + D V Y Sbjct: 239 FLDEVYYD 246 >gi|66044907|ref|YP_234748.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae B728a] gi|63255614|gb|AAY36710.1| tRNA pseudouridine synthase [Pseudomonas syringae pv. syringae B728a] Length = 284 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERSMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPIEWAREVLESRIRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VGVEY 260 >gi|304388653|ref|ZP_07370715.1| tRNA pseudouridine synthase A [Neisseria meningitidis ATCC 13091] gi|304337399|gb|EFM03571.1| tRNA pseudouridine synthase A [Neisseria meningitidis ATCC 13091] Length = 265 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|313631806|gb|EFR98984.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL N1-067] Length = 248 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKALQVM--TPFDISFLIVEEALADFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-N 178 + + A P L+ E M++A++ LVG HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + + I FL+ +R G+L G G+ + D+ KAL A+DR K APP+ Sbjct: 179 EDDDTLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLWRVDYE 248 >gi|330901134|gb|EGH32553.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 284 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTLKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VGVEY 260 >gi|218767391|ref|YP_002341903.1| tRNA pseudouridine synthase A [Neisseria meningitidis Z2491] gi|25009506|sp|Q9JWF1|TRUA_NEIMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121051399|emb|CAM07691.1| tRNA pseudouridine synthase [Neisseria meningitidis Z2491] Length = 265 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|325127315|gb|EGC50250.1| tRNA pseudouridine synthase A [Neisseria meningitidis N1568] Length = 265 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAVRPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|167770549|ref|ZP_02442602.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM 17241] gi|167667144|gb|EDS11274.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM 17241] Length = 246 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 110/247 (44%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y G+ Y G+Q Q+N ++ +++ A+ + GE + + G RTD+GVHA Sbjct: 1 MRHLLLTIRYRGTRYHGYQVQQNAVTVAQTVQDAVERIFGERLPIKGCSRTDAGVHANCF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +A+N +L I++ V + FH R+ + YLYRI Sbjct: 61 ALTLRTASVMACDAVVRAMNVHL--PSDIAVTGCREVPEAFHPRYDCKGKRYLYRIYNGT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LD M AAQ VG HDF F S +RT+ V Sbjct: 119 VRDPFSADLALFWKYPLDERRMDAAAQGFVGTHDFAAFCSSGSGVQDTVRTVTDASVTRH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + V FL+ +R VG+L G +T D+ L+ +DR GP APP GLY Sbjct: 179 GDFVIYSVTGNGFLYNMVRIMVGTLLEAARGVYTPADVLHMLEGRDRSAAGPTAPPHGLY 238 Query: 241 FDSVEYS 247 D+V Y Sbjct: 239 LDAVFYD 245 >gi|15677859|ref|NP_275027.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58] gi|25009507|sp|Q9JXI2|TRUA_NEIMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|7227297|gb|AAF42357.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58] gi|316983916|gb|EFV62895.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76] gi|325201083|gb|ADY96538.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76] Length = 265 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGQMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|254804153|ref|YP_003082374.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha14] gi|254667695|emb|CBA03553.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha14] Length = 265 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTAAARPQQAWIRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRQAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|149797294|ref|YP_001294664.1| tRNA-pseudouridine synthase A [Symbiobacterium thermophilum IAM 14863] Length = 267 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA--GRTDSGVHAL 58 M +I+ Y+G+ Y G+QRQ NG +IQ +E+A+ VTGE + GA GRTD+GVHA Sbjct: 1 MRTIKLILAYDGTAYAGFQRQPNGITIQQRLEEALRAVTGEPDLRIGAAAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H ALN +L D I+++ FHAR+ A + Y Y Sbjct: 61 GQVVHLRTYATIPIDRWPAALNGHL--PDDIAVIGAEEAPPDFHARYWAREKRYRYTFCL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + + ++ + +D + MR AA LVGRHDF FR+ A + +RTI + Sbjct: 119 SPYRLPMARLYSYHWHRPVDVDAMRRAAALLVGRHDFAAFRATGGSARTTVRTITRLTLT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + V A FL+ +R G+L VG G+ + + +AL+ R++ G PP G Sbjct: 179 EEPPFLHLDVTADGFLYNMVRIIAGTLLEVGAGRRSLDRVAQALRHGRREDAGRTLPPHG 238 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 239 LCLEEVVY 246 >gi|145588955|ref|YP_001155552.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|226708658|sp|A4SWX4|TRUA_POLSQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145047361|gb|ABP33988.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 275 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 134/255 (52%), Gaps = 11/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-----IVVVHGAGRTDSGVH 56 +R + ++Y+GS Y GWQ Q + +IQ +EKA+ GE V AGRTD+GVH Sbjct: 1 MRIALGLQYDGSPYAGWQTQLHQPTIQDELEKALTAFIGEEAKAFPVHTITAGRTDTGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV HFD + +N +L +I + V ++F ARFSA R+Y+Y + Sbjct: 61 ALGQVVHFDTNVGREDFSWVRGVNTFL--PKSIVVNWAKEVPEEFSARFSAYERTYIYAL 118 Query: 117 ITRQAPLALEKGRAWLI----PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + RA + + LD E M+ +A+ L+G HDF++FRS CQ+ +P++TI Sbjct: 119 HAGPCRSPIVNARAGYLMLPPDQFLDVEAMKKSAECLIGEHDFSSFRSSECQSKTPVKTI 178 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D+ S + R+ +FLH IR+ VG +G G+ S + + L A++R+ P Sbjct: 179 YAIDIISQEPWVYFRIRGNAFLHHMIRNIVGCFLQIGQGRQQSGWMAEVLTAKNRQIAAP 238 Query: 233 LAPPEGLYFDSVEYS 247 +GLY ++Y Sbjct: 239 TFMADGLYLAKIKYP 253 >gi|22536285|ref|NP_687136.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 2603V/R] gi|76798489|ref|ZP_00780725.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 18RS21] gi|77412040|ref|ZP_00788367.1| tRNA pseudouridine synthase A [Streptococcus agalactiae CJB111] gi|42559812|sp|Q8CX20|TRUA_STRA5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22533107|gb|AAM99008.1|AE014196_4 tRNA pseudouridine synthase A [Streptococcus agalactiae 2603V/R] gi|76586154|gb|EAO62676.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 18RS21] gi|77161897|gb|EAO72881.1| tRNA pseudouridine synthase A [Streptococcus agalactiae CJB111] Length = 258 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V++HGAGRTD GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDVGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|295103893|emb|CBL01437.1| pseudouridylate synthase I [Faecalibacterium prausnitzii SL3/3] Length = 254 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFR 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F P L ALN +L I +L + V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPPQKLPLALNQHL--PPDIRVLAVQTVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDVN 178 + +P+ LD M+ AAQ VG HDF + A +RTI V Sbjct: 119 DSPFDAAYYTRVPRRLDESAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ ++I V A +L+ +R G+L VG G+ + D+ L ++DR GP P +G Sbjct: 179 RRGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEYS 247 L+ VEY Sbjct: 239 LFLKRVEYP 247 >gi|189220286|ref|YP_001940926.1| pseudouridylate synthase [Methylacidiphilum infernorum V4] gi|259550415|sp|B3E0A0|TRUA_METI4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189187144|gb|ACD84329.1| Pseudouridylate synthase [Methylacidiphilum infernorum V4] Length = 255 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 140/245 (57%), Gaps = 3/245 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + + Y GSG+ GWQRQ ++Q ++E+A+ + E + V GAGRTD+GVHA QVA Sbjct: 8 YKLTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEPIPVEGAGRTDAGVHAKGQVAS 67 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F R+ P +L +ALN +L DT+ + + IV ++F ARF A+ ++Y Y + Sbjct: 68 FAAPRKLEPEVLKRALNYHL--PDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDPVMD 125 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGN 182 GRAW IP+++D E M AA+ +G+H+F F + +P+RT+ G+ Sbjct: 126 PFYLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVSNPGMPVKNPVRTVLDCFFLEQGS 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ V A FL+ +R+ VG+L VG G+ + +L+K + Q R E APP GLY Sbjct: 186 LVFFNVKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFAAAPPWGLYLL 245 Query: 243 SVEYS 247 +V+Y Sbjct: 246 AVDYP 250 >gi|290579596|ref|YP_003483988.1| putative tRNA pseudouridine synthase A [Streptococcus mutans NN2025] gi|254996495|dbj|BAH87096.1| putative tRNA pseudouridine synthase A [Streptococcus mutans NN2025] Length = 249 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 MIRY II Y+G+ + G+QRQ ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLNSGQAVKVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L L+ + D I ++ + V FHAR+ R++Y + + Sbjct: 61 QVIHFDLPQQRDLEKLRFGLDT--QTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L + A P +D ++ A + L G HDFT F + + +RTI V Sbjct: 119 RPKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTASGTSVENKVRTISRATVEK 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ +++ L++ DR GP A Sbjct: 179 DEKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRSLAGPTAASN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYD 248 >gi|291533595|emb|CBL06708.1| pseudouridylate synthase I [Megamonas hypermegale ART12/1] Length = 256 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 7/251 (2%) Query: 1 MIR-----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M++ + + Y+G+ Y G+QRQ ++Q +E A+F + G+ + + AGRTD+GV Sbjct: 8 MMKARRRNIKLTLSYDGTNYHGFQRQTKVVAVQNVLEGALFKLFGDSIELAAAGRTDAGV 67 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA+ QV +F + +A N L D I +L D+ F A S + Y+Y+ Sbjct: 68 HAIGQVVNFFTDGTIPIQNVVRAGNRLL--PDDIVLLKAEEADRDFSALHSVKSKIYIYK 125 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + W + K L+ E+M+ A +++ G HDF++FRS +SPIR I Sbjct: 126 VFENELADPFMSRFYWHVNKKLNLEDMQEALKYIEGEHDFSSFRSAGGNDTSPIREIYEA 185 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N+ + FL+ +R+ +G + +G G+ ++ K ++A++R G +AP Sbjct: 186 SCTKENNVYTFKFWGSGFLYHMVRNIMGLMINIGLGRVDKHEVPKIIEAKNRALAGKMAP 245 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 246 ANGLYLQKVYY 256 >gi|254248703|ref|ZP_04942023.1| Pseudouridylate synthase [Burkholderia cenocepacia PC184] gi|124875204|gb|EAY65194.1| Pseudouridylate synthase [Burkholderia cenocepacia PC184] Length = 271 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQAQPHGKTVQNRLEHALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTDLEREVFSWVRGTNAFL--PPTVSVQWAKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 GYFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLY 238 Query: 241 FDSVEYS 247 V Y Sbjct: 239 LAHVGYP 245 >gi|298370079|ref|ZP_06981395.1| tRNA pseudouridine synthase A [Neisseria sp. oral taxon 014 str. F0314] gi|298281539|gb|EFI23028.1| tRNA pseudouridine synthase A [Neisseria sp. oral taxon 014 str. F0314] Length = 275 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ +++ Y+GS +FGWQ+Q G ++Q +E AI + GE + V AGRTD+GVHA+ Q Sbjct: 13 QRWILVLSYDGSRFFGWQKQAEGIPTVQAELESAISKIAGENISVTVAGRTDTGVHAVAQ 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P + +NAYL D +++L FHARF A R Y Y + + Sbjct: 73 VVHFDTAVFRPPQAWVRGVNAYL--PDGVAVLCAQTTQPHFHARFDAFGRRYRYLLQSAP 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L KGRA L+ E MR AA LVG HDF++FR+ CQA SP++TI ++ Sbjct: 131 VRSPLMKGRAGWTHLPLNLERMRQAAALLVGEHDFSSFRAAECQAKSPVKTIYSTEIGGG 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + +FLH +R+ +G+L VG G+ ++ + R + P +GLY Sbjct: 191 AEWLYFDIHGNAFLHHMVRNIMGALVYVGCGRLDVGQFADLIKERSRLKAPPTFMSDGLY 250 Query: 241 FDSVEYS 247 V+Y Sbjct: 251 LTGVDYP 257 >gi|240015157|ref|ZP_04722070.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI18] gi|240122134|ref|ZP_04735096.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID24-1] Length = 265 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E M AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMCRAASLLVGEQDFSSFRAAGCQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|330952706|gb|EGH52966.1| tRNA pseudouridine synthase A [Pseudomonas syringae Cit 7] Length = 274 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERTMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VGVEY 250 >gi|323490654|ref|ZP_08095859.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2] gi|323395746|gb|EGA88587.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2] Length = 247 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R I Y+GSG+ G+Q Q + ++Q + K + + G+++ V +GRTD+ VHA Sbjct: 1 MKRLKATIAYDGSGFAGYQVQPDSRTVQLELMKVLETIHKGKVIQVVASGRTDAKVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KALN L + I + ++ VD FHAR+ ++Y Y+ Sbjct: 61 QVIHFDTELSIPIIGWLKALNVLL--PEDIRVHSIEEVDTSFHARYHTTGKTYRYKWDRS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + + + LD E M+ A+Q +VG HDF++F + + +RT+ D Sbjct: 119 QIISPFTRSLMVHVKQPLDVEAMKKASQAIVGTHDFSSFCAANTAVVDKVRTVRRLDFEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + + + FL+ +R G+L VG G+ + +LE + A DR G AP GL Sbjct: 179 HGNELHMVIEGTGFLYNMVRIIAGTLAEVGMGRRKAEELEDIVSATDRDAAGITAPAHGL 238 Query: 240 YFDSVEYS 247 Y ++V Y Sbjct: 239 YLENVMYE 246 >gi|332638011|ref|ZP_08416874.1| tRNA pseudouridine synthase A [Weissella cibaria KACC 11862] Length = 249 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY I Y+G+ ++GWQ Q ++Q +EK + + + + V G+GRTD+ VHA Sbjct: 1 MPRYKATISYDGTEFYGWQVQPGKRTVQLEMEKVVNKMAKDPADHIRVQGSGRTDARVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFDL + + K L+ L I I ++ VD+ FHA+FSA ++Y YR+ Sbjct: 61 QGQVVHFDLPFDIPNEAVRKGLSTML--PYDIGIKSVEKVDESFHAQFSAHNKTYRYRLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-- 175 T + ++ + +D M+ A VG HD+ +F + Q + +RT+ Sbjct: 119 TTEFIDPFKRNYTGHWHRRIDTSLMQQAIGDYVGEHDWLSFVASGFQQKTTVRTVYSAKM 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + I FL+ QIR VG L +G+G D+++ +DR++ AP Sbjct: 179 WEKPEEDEIWFEFTGNGFLYNQIRIMVGVLLEIGNGSRPVDDIQRLFAVKDRQQARFTAP 238 Query: 236 PEGLYFDSVEY 246 +GLY SV+Y Sbjct: 239 AQGLYLMSVDY 249 >gi|58617163|ref|YP_196362.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Gardel] gi|62901148|sp|Q5FGS1|TRUA_EHRRG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58416775|emb|CAI27888.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Gardel] Length = 246 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 110/247 (44%), Positives = 163/247 (65%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY ++IEY+GS + GWQ+Q N +SIQ +EKAIF + + V V+GAGRTD+GVHAL Q Sbjct: 1 MRYKIVIEYDGSNFIGWQKQNHNSNSIQEILEKAIFKFSKQHVTVYGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ I+ A+N +L IS I+++++ D FHARFSA RR YLY+I+ R Sbjct: 61 VAHFDLTTDFETYIVRNAINYHL-ISHAIAVVHVEKTDTDFHARFSAKRRYYLYKIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL +++ RAWL+ L+ ENM A ++ G H+F++FR+ CQ+ SP++T+D+ + Sbjct: 120 SPLTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPVKTVDNLSITYN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I + A SFLH Q+R VG+L G G + ++ ++A +R G AP GLY Sbjct: 180 HPYIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY 239 Query: 241 FDSVEYS 247 F V+YS Sbjct: 240 FVKVDYS 246 >gi|257487527|ref|ZP_05641568.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012647|gb|EGH92703.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 284 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTTKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|325206941|gb|ADZ02394.1| tRNA pseudouridine synthase A [Neisseria meningitidis M04-240196] Length = 265 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTIVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTAAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESVP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|15644322|ref|NP_229374.1| tRNA pseudouridine synthase ACD [Thermotoga maritima MSB8] gi|8134772|sp|Q9X1R0|TRUA_THEMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4982143|gb|AAD36641.1|AE001802_10 pseudouridylate synthase I [Thermotoga maritima MSB8] Length = 245 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 125/246 (50%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDTGVHANGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIRNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR A ++L G HDFT+F P+RTI + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAVKYLEGTHDFTSF-KTGSDERDPVRTIYRIRILR 177 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP G Sbjct: 178 LKNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHG 237 Query: 239 LYFDSV 244 LYF V Sbjct: 238 LYFYKV 243 >gi|289623904|ref|ZP_06456858.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649364|ref|ZP_06480707.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. 2250] gi|298486236|ref|ZP_07004299.1| tRNA pseudouridine synthase A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159243|gb|EFI00301.1| tRNA pseudouridine synthase A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325326|gb|EFW81393.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. B076] gi|320327689|gb|EFW83697.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330869252|gb|EGH03961.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877919|gb|EGH12068.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330891458|gb|EGH24119.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. mori str. 301020] gi|330985608|gb|EGH83711.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 284 Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|254670107|emb|CBA05050.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha153] gi|319409652|emb|CBY89952.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I; tRNA pseudouridylate synthase I) [Neisseria meningitidis WUE 2594] gi|325201326|gb|ADY96780.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240149] gi|325208888|gb|ADZ04340.1| tRNA pseudouridine synthase A [Neisseria meningitidis NZ-05/33] Length = 265 Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQTALETALAQIAGEFVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAVRPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|59802129|ref|YP_208841.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA 1090] gi|62901142|sp|Q5F5V8|TRUA_NEIG1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|59719024|gb|AAW90429.1| putative tRNA pseudouridine synthase [Neisseria gonorrhoeae FA 1090] Length = 265 Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTAAVRPAQAWIRGVNAHL--PEGIAVLHARQVAPGFHARFDASGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLELDIGPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|330973842|gb|EGH73908.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 274 Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPIEWAREVLESRIRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VGVEY 250 >gi|307244438|ref|ZP_07526548.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM 17678] gi|306492195|gb|EFM64238.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM 17678] Length = 253 Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQV 61 +++ Y G+ Y GWQ+Q + IQG +E A + + + G+GRTD+GVHAL QV Sbjct: 5 NIMLVVAYEGTRYCGWQKQPDSPGIQGELEYACTQAFNKKNINITGSGRTDAGVHALGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + + LN L I++L V +FHAR SA +++Y Y+I + Sbjct: 65 ANFTVDTTIPVDKIPEVLNNRL--PKDIAVLRAQEVKSEFHARHSAHKKTYRYQIYPSRI 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K A+ + LD + M+ HL+G+HDF F S S +RTI D+ G Sbjct: 123 RSPFLKDFAYQVKYDLDLDRMKEEIIHLLGQHDFKGFMSSGSDIKSTVRTIYRADIYKRG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LI I V FL+ +R G++ +G GK T L + + R G APP+GL+ Sbjct: 183 DLIVIEVEGNGFLYNMVRIIAGTMVDIGRGKIT-ESLRDIIGSGVRARAGHTAPPQGLFL 241 Query: 242 DSVEYS 247 V+Y Sbjct: 242 VGVDYP 247 >gi|242239994|ref|YP_002988175.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech703] gi|242132051|gb|ACS86353.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech703] Length = 275 Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 14 KIALGIEYDGSRYYGWQRQAEVESVQECLEKALSNVANEPISVFCAGRTDAGVHATGQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA+L I++ ++ VD+ FHARFSA R Y Y I + Sbjct: 74 HFTTGAVRKDAAWTMGVNAHL--PSDIAVRWVTTVDEAFHARFSATARRYRYVIYNHRYR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD M A Q L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 132 PAILSHGVTHYHLPLDAARMERAGQCLLGENDFTSFRAVQCQSRTPWRNVKHLKVMRHGA 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + L A+DR A +GLY Sbjct: 192 YIVVDIKANAFVHHMVRNIVGSLMEVGCGNQPEGWIAELLAAKDRTLAAATARADGLYLV 251 Query: 243 SVEYS 247 +V+Y Sbjct: 252 AVDYP 256 >gi|289671992|ref|ZP_06492882.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae FF5] gi|330975198|gb|EGH75264.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 274 Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERTLKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VGVEY 250 >gi|194099947|ref|YP_002003085.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae NCCP11945] gi|240017604|ref|ZP_04724144.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA6140] gi|240114197|ref|ZP_04728687.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|240116830|ref|ZP_04730892.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|254494689|ref|ZP_05107860.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291] gi|268600271|ref|ZP_06134438.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|268602508|ref|ZP_06136675.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|238693230|sp|B4RR02|TRUA_NEIG2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193935237|gb|ACF31061.1| TruA [Neisseria gonorrhoeae NCCP11945] gi|226513729|gb|EEH63074.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291] gi|268584402|gb|EEZ49078.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|268586639|gb|EEZ51315.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|317165398|gb|ADV08939.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107] Length = 265 Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDITAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRTDLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|172062883|ref|YP_001810534.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MC40-6] gi|238692865|sp|B1Z1N7|TRUA_BURA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171995400|gb|ACB66318.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MC40-6] Length = 270 Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRTDFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFAAFERTYYYVLYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRTLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|90962375|ref|YP_536291.1| tRNA pseudouridine synthase A [Lactobacillus salivarius UCC118] gi|301300240|ref|ZP_07206452.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ACS-116-V-Col5a] gi|123391325|sp|Q1WSC1|TRUA_LACS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|90821569|gb|ABE00208.1| tRNA pseudouridine synthase A [Lactobacillus salivarius UCC118] gi|300215017|gb|ADJ79433.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Lactobacillus salivarius CECT 5713] gi|300852181|gb|EFK79853.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ACS-116-V-Col5a] Length = 256 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 R+ + + Y+G+ + G+Q Q N ++Q +EKAI ++ E + V+G+GRTDSGVHAL Sbjct: 3 QRFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALG 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + LN+ L +++ IV FH+R++ + YLYR+ Sbjct: 63 QVVHFDFPHPISAKGMLRGLNSML--PLDCEVVDCKIVPNDFHSRYTTHGKRYLYRVSRG 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ LD E ++ A + G HD+++F + QA S +RTI V Sbjct: 121 EFVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQAKSHVRTIYEAKVYE 180 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I FL+ Q+R V +L +G+GK D + + +DR + AP Sbjct: 181 DKVNDEIVFEFYGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRSQARQTAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLKEVYYD 250 >gi|325266500|ref|ZP_08133177.1| tRNA pseudouridine synthase A [Kingella denitrificans ATCC 33394] gi|324981943|gb|EGC17578.1| tRNA pseudouridine synthase A [Kingella denitrificans ATCC 33394] Length = 265 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+GS +FGWQ+Q G ++Q ++E A+ + GE V V AGRTD+GVHA Q Sbjct: 7 TRYALTLAYDGSRFFGWQKQAEGVATVQAALEHALSQIAGEPVSVIAAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + +NA+L +++ I D FHARF A R Y Y + + Sbjct: 67 VVHFDSRADRPLSAWVRGVNAHL--PQGVAVHKAQIADSAFHARFDASGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA +L+ + MR AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 125 VRSPLLYGRAGWTHYALNDDAMRQAAQLLVGEHDFSSFRAAQCQAKSPVKTMYAVHLQRT 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+++ + A +FLH +R+ +G+L VG G+ + + ++ + R P P+GLY Sbjct: 185 GSLLKLDLHANAFLHHMVRNIMGALVYVGCGRLSVAQFGELIETRSRLYAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|255655803|ref|ZP_05401212.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-23m63] gi|296450959|ref|ZP_06892706.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296879075|ref|ZP_06903071.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] gi|296260177|gb|EFH07025.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296429948|gb|EFH15799.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] Length = 245 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M MI+ Y+GS Y G+Q+ N +IQ +E + +T E V + G+GRTD G HA Sbjct: 1 MRNIKMIVAYDGSRYKGYQKLGDNNMTIQEKLENVLSKMTNETVEIIGSGRTDMGAHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + K L YL + I + + VD++FH+R++ ++Y+YRI Sbjct: 61 QVVNFRTNCMDSLDKIQKYLYEYL--PEDIVVKAVEEVDERFHSRYNVKSKTYMYRIDNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A + K LD + MR A+++LVG HDFT+F S + S +R I ++ Sbjct: 119 KYHNPFIRKYATHVSKKLDLDRMRKASEYLVGEHDFTSFASSKSKKKSNVREIYSINIKE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N+IEI V FL+ +R VG+L VG + D++ L+++DR + AP +GL Sbjct: 179 DDNIIEIYVEGNGFLYNMVRIIVGALIDVGLKRRAPQDIKYMLESRDRCQSSDTAPAKGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 CLWKVRY 245 >gi|170703047|ref|ZP_02893873.1| tRNA pseudouridine synthase A [Burkholderia ambifaria IOP40-10] gi|170132039|gb|EDT00541.1| tRNA pseudouridine synthase A [Burkholderia ambifaria IOP40-10] Length = 270 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRTDFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFAAFERTYYYVLYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DRK P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRKLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|161869166|ref|YP_001598332.1| tRNA pseudouridine synthase A [Neisseria meningitidis 053442] gi|189030137|sp|A9M0B8|TRUA_NEIM0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|161594719|gb|ABX72379.1| tRNA pseudouridine synthase [Neisseria meningitidis 053442] Length = 265 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTAAVRPVQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|330878235|gb|EGH12384.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 274 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSLKAWVMGANINL--PHDVSVSWAKVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|15675714|ref|NP_269888.1| tRNA pseudouridine synthase A [Streptococcus pyogenes M1 GAS] gi|19746822|ref|NP_607958.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS8232] gi|50914971|ref|YP_060943.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10394] gi|71904268|ref|YP_281071.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS6180] gi|71911430|ref|YP_282980.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS5005] gi|94989250|ref|YP_597351.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS9429] gi|94991194|ref|YP_599294.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10270] gi|94993138|ref|YP_601237.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS2096] gi|94995068|ref|YP_603166.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10750] gi|139473113|ref|YP_001127828.1| tRNA pseudouridine synthase A [Streptococcus pyogenes str. Manfredo] gi|209560051|ref|YP_002286523.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NZ131] gi|54039783|sp|P65851|TRUA_STRP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042088|sp|P65850|TRUA_STRP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901238|sp|Q5XA03|TRUA_STRP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122986813|sp|Q1J4W4|TRUA_STRPF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122986985|sp|Q1JF09|TRUA_STRPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123257716|sp|Q1J9W8|TRUA_STRPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123258127|sp|Q1JK16|TRUA_STRPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123775214|sp|Q48RE4|TRUA_STRPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166229842|sp|A2RCK6|TRUA_STRPG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057736|sp|B5XIG6|TRUA_STRPZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13622931|gb|AAK34609.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes M1 GAS] gi|19749059|gb|AAL98457.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS8232] gi|50904045|gb|AAT87760.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10394] gi|71803363|gb|AAX72716.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS6180] gi|71854212|gb|AAZ52235.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS5005] gi|94542758|gb|ABF32807.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS9429] gi|94544702|gb|ABF34750.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10270] gi|94546646|gb|ABF36693.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS2096] gi|94548576|gb|ABF38622.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10750] gi|134271359|emb|CAM29579.1| tRNA pseudouridine synthase A [Streptococcus pyogenes str. Manfredo] gi|209541252|gb|ACI61828.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NZ131] Length = 249 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ + G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIEKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P +L+ + M+ A LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQEAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEICYE 248 >gi|291288851|ref|YP_003505667.1| tRNA pseudouridine synthase A [Denitrovibrio acetiphilus DSM 12809] gi|290886011|gb|ADD69711.1| tRNA pseudouridine synthase A [Denitrovibrio acetiphilus DSM 12809] Length = 245 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 127/242 (52%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +I+EY G+ + GWQ Q NG ++Q + KA+ + V V G+GRTDSGVHAL QVA+F Sbjct: 6 KLIVEYVGTDFAGWQVQPNGRTVQEELHKALSKMYKTKVTVIGSGRTDSGVHALGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 R P + LN+ L + ISI ++ V + FHA+ +A+ ++YLYRI + A Sbjct: 66 RTERYIPPENVHMGLNSML--PEDISISSVEDVPEDFHAQLNAVSKTYLYRIFPSRVRSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + GR W + L+ + M ++ G HDFT+F + +R I++ +I Sbjct: 124 MLAGRTWWVKDELNYKRMCELLKYFEGEHDFTSFCVQTSLRENNVRRINNIRCYREDKVI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + FLH +R G++ + +++A++ +DR + GP A GLY V Sbjct: 184 CIEINGNGFLHNMVRIIAGTVVEALRKGYGDEYIKEAIEGRDRSKAGPTAHAAGLYLKKV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|261409491|ref|YP_003245732.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10] gi|329922021|ref|ZP_08277814.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5] gi|261285954|gb|ACX67925.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10] gi|328942404|gb|EGG38668.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5] Length = 263 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 122/257 (47%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ Y G+Q Q G +IQ +E+AI ++GE + + +GRTD+GVHA Q Sbjct: 1 MRNLLMKVSYDGTDYNGFQTQPGGHTIQDYLEEAIRRLSGEQLKITASGRTDAGVHARAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALN +L + I + + V +FH+R +A R++Y + I Q Sbjct: 61 VFNFYTASPIPVERWCMALNTWL--PEDIVVSDAMEVPMEFHSRHAAKRKTYRFTINANQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 P + LD M HL+G HDFTTF S S +RTI + Sbjct: 119 YPDLFNRRYQIHHHGKLDIAAMEQGLSHLIGTHDFTTFASRKSTKPSHVRTIFDAWIEKD 178 Query: 179 --------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +I V FL +R +G+L VG+GK D++ L+AQ+R Sbjct: 179 TSMCRPGTRDQGIIHTYVSGNGFLQHMVRIIMGTLIEVGEGKRHPDDMKVILEAQNRAAA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 GP A +GL V+Y Sbjct: 239 GPTAMGKGLMLWEVDYD 255 >gi|167629501|ref|YP_001680000.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1] gi|167592241|gb|ABZ83989.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1] Length = 259 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 119/246 (48%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 R + + Y+G+ Y G+Q Q+N +IQ ++ +AI ++TGE V V+ AGRTD+GVHA Sbjct: 4 RRLKLTVAYDGTCYHGFQTQENPALPTIQDALVRAIKVLTGEEVKVNCAGRTDAGVHARG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F A+NA L ++++ V FH+RF A+ + Y Y I Sbjct: 64 QVVDFVTSSPIPDDRFPFAMNAIL--PPDVAVVAAKTVPLAFHSRFGALGKHYRYTIYNH 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + + L E M AAQ VG HDF F + +RT+ D+ Sbjct: 122 RIPSPFHRRYSHQVFPPLQFEAMAAAAQCFVGTHDFRGFCATGSPVKDFVRTVYRCDLTR 181 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + V+ FL+ IR G+L VG GK ++ + ++DR G APP+G Sbjct: 182 QEEHRLVLDVMGNGFLYNMIRIIAGTLIDVGKGKIALEEIPAIIASRDRTRAGMTAPPQG 241 Query: 239 LYFDSV 244 L V Sbjct: 242 LCLMKV 247 >gi|146307739|ref|YP_001188204.1| tRNA pseudouridine synthase A [Pseudomonas mendocina ymp] gi|145575940|gb|ABP85472.1| tRNA pseudouridine synthase A [Pseudomonas mendocina ymp] Length = 287 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 126/247 (51%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ N +SIQG +E A+ V G E + + AGRTD+ VHA Q Sbjct: 19 RIALGLEYKGARYRGFQRQAGNVASIQGCLESALSKVAGGEPINIMCAGRTDASVHASGQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L + IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VVHFDTAVERPLHAWIMGANMNL--PNDISVTWARVMPAHFHARFSAMARRYRYVIYNDP 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD MR AA+ LVG HDF+ FR+ CQA SPI+T+ H V Sbjct: 137 IRPAHMAEEVTWNHRPLDVTRMREAARALVGTHDFSAFRATQCQAKSPIKTVHHLQVIEH 196 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +FLH +R+ G L +G G+ + L+ DR+ G A P GLY Sbjct: 197 GCFIVLDIRANAFLHHMVRNIAGVLMAIGAGERPVEWAREVLERADRRSGGVTAHPYGLY 256 Query: 241 FDSVEYS 247 VEY Sbjct: 257 LVQVEYP 263 >gi|240118890|ref|ZP_04732952.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|240126753|ref|ZP_04739639.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] gi|268604599|ref|ZP_06138766.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|268685331|ref|ZP_06152193.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] gi|268588730|gb|EEZ53406.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|268625615|gb|EEZ58015.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] Length = 265 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRAGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|126699393|ref|YP_001088290.1| tRNA pseudouridine synthase A [Clostridium difficile 630] gi|254975421|ref|ZP_05271893.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-66c26] gi|255092808|ref|ZP_05322286.1| tRNA pseudouridine synthase A [Clostridium difficile CIP 107932] gi|255100921|ref|ZP_05329898.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-63q42] gi|255306811|ref|ZP_05350982.1| tRNA pseudouridine synthase A [Clostridium difficile ATCC 43255] gi|255314550|ref|ZP_05356133.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-76w55] gi|255517225|ref|ZP_05384901.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-97b34] gi|255650331|ref|ZP_05397233.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-37x79] gi|260683444|ref|YP_003214729.1| tRNA pseudouridine synthase A [Clostridium difficile CD196] gi|260687040|ref|YP_003218173.1| tRNA pseudouridine synthase A [Clostridium difficile R20291] gi|306520297|ref|ZP_07406644.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-32g58] gi|115250830|emb|CAJ68654.1| Pseudouridylate synthase (tRNA pseudouridine synthase A) [Clostridium difficile] gi|260209607|emb|CBA63265.1| tRNA pseudouridine synthase 2 [Clostridium difficile CD196] gi|260213056|emb|CBE04418.1| tRNA pseudouridine synthase 2 [Clostridium difficile R20291] Length = 245 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M MI+ Y+GS Y G+Q+ N +IQ +E + +T E V + G+GRTD G HA Sbjct: 1 MRNIKMIVAYDGSRYKGYQKLGDNNMTIQEKLENVLSKMTNETVEIIGSGRTDMGAHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + K L YL + I + + VD++FH+R++ ++Y+Y+I Sbjct: 61 QVVNFRTNCMDSLDKIQKYLYEYL--PEDIVVKTVEEVDERFHSRYNVKSKTYMYKIDNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A + K LD + MR A+++LVG HDFT+F S + S +R I ++ Sbjct: 119 KYHNPFIRKYATHVSKKLDLDRMRKASEYLVGEHDFTSFASSKSKKKSNVREIYSINIKE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N+IEI V FL+ +R VG+L VG + D++ L+++DR + AP +GL Sbjct: 179 DDNVIEIYVEGNGFLYNMVRIIVGALIDVGLKRRAPQDIKYMLESKDRCQSSDTAPAKGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 CLWKVTY 245 >gi|71737567|ref|YP_273899.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558120|gb|AAZ37331.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. phaseolicola 1448A] Length = 274 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERTMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|260439477|ref|ZP_05793293.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] gi|291042704|ref|ZP_06568449.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] gi|291013373|gb|EFE05335.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] Length = 265 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDASGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAASLLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|306826655|ref|ZP_07459958.1| tRNA pseudouridine synthase A [Streptococcus pyogenes ATCC 10782] gi|304431103|gb|EFM34109.1| tRNA pseudouridine synthase A [Streptococcus pyogenes ATCC 10782] Length = 249 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ + G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIKKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P +L+ + M+ A LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQEAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEICYE 248 >gi|325135431|gb|EGC58051.1| tRNA pseudouridine synthase A [Neisseria meningitidis M0579] Length = 265 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKHRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|302060553|ref|ZP_07252094.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato K40] Length = 284 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERSLKAWVMGANINL--PHDVSVSWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|240124428|ref|ZP_04737384.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] gi|268683056|ref|ZP_06149918.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] gi|268623340|gb|EEZ55740.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] Length = 265 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRAGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|302187262|ref|ZP_07263935.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae 642] Length = 274 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERTMKAWVMGANINL--PHDVSVTWARVMPAAFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA+ LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEFLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VGVEY 250 >gi|293398170|ref|ZP_06642375.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62] gi|291611433|gb|EFF40503.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62] Length = 265 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRAGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|240081654|ref|ZP_04726197.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] gi|268597753|ref|ZP_06131920.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] gi|268551541|gb|EEZ46560.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] Length = 265 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTAAVRPAQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|221212470|ref|ZP_03585447.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD1] gi|221167569|gb|EEE00039.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD1] Length = 270 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PPTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHVYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRNRAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|304438671|ref|ZP_07398609.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368320|gb|EFM22007.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 275 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 127/254 (50%), Gaps = 9/254 (3%) Query: 1 MIR-----YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M++ + + Y+G+ Y G+QRQ ++Q +E A+ V GE V + AGRTD+G Sbjct: 1 MMKARARNIALKVAYDGTNYHGFQRQTPPIRAVQNVLEAALAQVCGETVELASAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV +F L +A+N L I + + F AR SA ++Y+Y Sbjct: 61 VHAYGQVVNFFTDGRIPTERLPRAVNGLL--PPDIVVSEAWEAARDFSARHSATGKAYVY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R+ + P + AW I + LD + MR A L G HD+++FR+ SP+RT+D Sbjct: 119 RMKECRVPDPFTRSYAWQIFQPLDYDAMRAALHLLEGTHDYSSFRAAGGAPMSPVRTLDT 178 Query: 175 FDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + G + + + FL+ +R+ V + VG G+ + + A+DR+ P Sbjct: 179 IRLTAEGEGRLSLYIHGTGFLYHMVRNIVSTAVAVGTGRISKDRFAEIFAARDRRLAPPT 238 Query: 234 APPEGLYFDSVEYS 247 AP GLY +V+Y Sbjct: 239 APAGGLYLLAVDYD 252 >gi|126731534|ref|ZP_01747340.1| tRNA pseudouridine synthase A [Sagittula stellata E-37] gi|126708070|gb|EBA07130.1| tRNA pseudouridine synthase A [Sagittula stellata E-37] Length = 249 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 113/244 (46%), Positives = 154/244 (63%), Gaps = 5/244 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 +EY+G + GWQRQ S+Q +IE A+ + + GAGRTD+GVHA QVA D+ Sbjct: 1 MEYDGRPFSGWQRQAAQPSVQQAIEDALARLEPGPFTIAGAGRTDAGVHARGQVAQCDMA 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 ++W P L +ALN +LK ++I + V +HARFSA+ R YL+RI+ R+AP LE+ Sbjct: 61 KDWDPFRLSEALNFHLK-PAPVAIRACARVADDWHARFSAVERRYLFRILMRRAPATLEE 119 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN----SFGNL 183 G+ W + LD MR A HLVGRHDFTTFRS+ CQA SP++T+D ++ G Sbjct: 120 GQVWRVMHPLDVTAMREGAAHLVGRHDFTTFRSVMCQAKSPVKTLDSLEIKAVDGPAGPE 179 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + ARSFLH Q+RSFVG+L+ VG G W + AL+A+DR CGP+ PP+GLY Sbjct: 180 VWFSLRARSFLHNQVRSFVGTLERVGAGAWAPDRVGAALEARDRAACGPVCPPQGLYLTG 239 Query: 244 VEYS 247 V Y Sbjct: 240 VGYP 243 >gi|313114592|ref|ZP_07800100.1| tRNA pseudouridine synthase A [Faecalibacterium cf. prausnitzii KLE1255] gi|310623056|gb|EFQ06503.1| tRNA pseudouridine synthase A [Faecalibacterium cf. prausnitzii KLE1255] Length = 248 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAQTFQDALQAVLGSRPDIKGCSRTDAGVHALGFK 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L ALN +L I +L+ +V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPAAKLPLALNQHL--PPDIRVLDAQVVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDVN 178 + +P+ LD M+ AAQ VGRHDF + A +RTI V Sbjct: 119 DSPFDAAYYTRVPRHLDEARMQAAAQQFVGRHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+I V A +L+ +R G+L G G+ ++ L+++DR GP P +G Sbjct: 179 REGDEIDIEVTADGYLYNMVRILAGTLCEAGAGRLDPAEIPAILESRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEYS 247 L+ VEY Sbjct: 239 LFLKCVEYD 247 >gi|308390134|gb|ADO32454.1| tRNA pseudouridine synthase [Neisseria meningitidis alpha710] gi|325204986|gb|ADZ00440.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240355] Length = 265 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTVAVRPQQAWVRGVNAHL--PEGIAVLHAQQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|257440210|ref|ZP_05615965.1| tRNA pseudouridine synthase A [Faecalibacterium prausnitzii A2-165] gi|257197244|gb|EEU95528.1| tRNA pseudouridine synthase A [Faecalibacterium prausnitzii A2-165] Length = 249 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + Y+G+ Y G+Q Q NG S+ + + + V + G RTD+GVHAL Sbjct: 1 MQNYLLTLAYDGTNYCGFQVQPNGRSVAQTFQDGLEAVLHSRPDIKGCSRTDAGVHALGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F P L A+N +L I +L +V ++FHAR++A ++YLYRI Sbjct: 61 ALNFHAETRIPPEKLPLAINQHL--PPDIRVLCARVVPEEFHARYAAHTKTYLYRIHNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDV 177 ++ +P+ LD + M+ AA+ VG+HDF + A +RTI V Sbjct: 119 IDSPFDEKYYTRVPRRLDVDAMQRAAEQFVGKHDFLALCAAGSSAAAHGDTVRTITDCHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ ++I V A +L+ +R G+L VG G+ + L ++DR + GP P + Sbjct: 179 TRKGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRMQPDAIPGILASRDRSQAGPTLPAK 238 Query: 238 GLYFDSVEYS 247 GL+ + V+Y Sbjct: 239 GLFLEKVDYD 248 >gi|115358097|ref|YP_775235.1| tRNA pseudouridine synthase A [Burkholderia ambifaria AMMD] gi|122321799|sp|Q0BAC2|TRUA_BURCM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115283385|gb|ABI88901.1| tRNA pseudouridine synthase A [Burkholderia ambifaria AMMD] Length = 270 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + ++Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGVQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRTDFSWVRGTNAFL--PSTVSVQWAKPMPETFHARFAAFERTYYYVLYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRTLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|303238754|ref|ZP_07325286.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] gi|302593633|gb|EFL63349.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] Length = 245 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M ++I+Y+GS Y GWQR + +IQG +E+ + ++ E + + G+GRTD+GVHA + Sbjct: 1 MRNIKLVIQYDGSKYRGWQRLGDSDKTIQGKLEQVLSQMSNEKIELIGSGRTDAGVHAFK 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + L YL + I +++ VD FH+R + YLYRI Sbjct: 61 QVANFHTKSDLAEDAMLDYLYKYL--PEDIVVIDAEEVDNMFHSRHHVKGKKYLYRIWNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + I + LD MR AA+H G HDF++F S+ + S R I ++ Sbjct: 119 KRHNPFMRKHCTHIAEPLDIRLMRNAAEHFTGMHDFSSFTSLKTKNKSKEREIFSVEIEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++I FL+ R G+L VG G+ + ++ K L +DRK GP AP GL Sbjct: 179 ENEIMDIVFYGNGFLYNMARIMAGTLIEVGAGRINADNIPKILAKKDRKLAGPTAPTNGL 238 Query: 240 YFDSVEY 246 VEY Sbjct: 239 ILYDVEY 245 >gi|237800363|ref|ZP_04588824.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023220|gb|EGI03277.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 284 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTLAERSLKAWVMGANINL--PHDVSVTWARVMPANFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA+ LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEFLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|121635695|ref|YP_975940.1| tRNA pseudouridine synthase A [Neisseria meningitidis FAM18] gi|166228740|sp|A1KWB6|TRUA_NEIMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120867401|emb|CAM11173.1| tRNA pseudouridine synthase [Neisseria meningitidis FAM18] gi|325143594|gb|EGC65914.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240013] Length = 265 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESVP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|77406326|ref|ZP_00783390.1| tRNA pseudouridine synthase A [Streptococcus agalactiae H36B] gi|77175064|gb|EAO77869.1| tRNA pseudouridine synthase A [Streptococcus agalactiae H36B] Length = 258 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEILVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMKEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|330966232|gb|EGH66492.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 274 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSLKAWVMGANINL--PHDVSVSWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|262282044|ref|ZP_06059813.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA] gi|262262498|gb|EEY81195.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA] Length = 249 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FHAR++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVERVSDDFHARYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRYYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|332532285|ref|ZP_08408166.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis ANT/505] gi|332038383|gb|EGI74828.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis ANT/505] Length = 264 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG Y GWQRQ + +S+Q +EKA+ + V V AGRTD+GVH Q+ Sbjct: 1 MRVALGVEYNGVRYSGWQRQSHVNSVQQEVEKALSRICNHPVEVVCAGRTDAGVHGTGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +N L I+I V FHARFSA R Y Y I Sbjct: 61 IHFETEASRDMVAFTMGMNTLL--PKDIAIRFAQPVAVDFHARFSATARRYRYIIYNSPF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A Q+L+G HDFT+FR+IHCQA++P RTI H V G Sbjct: 119 RGAVLSEGVTHFHHPLDEVKMQEACQYLIGTHDFTSFRAIHCQANTPTRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +FLH +R+ GSL +G K L++ L ++R + A GLY Sbjct: 179 CYVIIDIKANAFLHHMVRNITGSLMDIGIHKQQPIWLKELLDCKERAKASATAKAAGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|319943971|ref|ZP_08018251.1| tRNA pseudouridine synthase A [Lautropia mirabilis ATCC 51599] gi|319742732|gb|EFV95139.1| tRNA pseudouridine synthase A [Lautropia mirabilis ATCC 51599] Length = 307 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 138/251 (54%), Gaps = 8/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 R+ + Y+G + GWQ+Q S+Q ++E A+ V G+ + + AGRTD+GVHAL Sbjct: 41 RWVCGVSYDGRDFCGWQKQPPVPGLAPSVQTTVEAALSAVAGQTIDIRCAGRTDAGVHAL 100 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV--DKQFHARFSAIRRSYLYRI 116 QV F + P + NA+L DT+++ + + D F ARFSA R+Y Y + Sbjct: 101 EQVIEFSTTAQRPPTAWVRGANAHL--PDTVAVRWAAPLAPDADFDARFSARERTYWYVL 158 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 I L +GRA + LD M+ AA+ ++G HDF++FR+ CQA++P+RT+ + Sbjct: 159 IDSPVAPPLWQGRAGWTHRPLDVARMQAAARSVLGTHDFSSFRASECQAATPVRTLTEWT 218 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ A +FLH +R+ VGSL VGDG+ + + + L A+ R P Sbjct: 219 VERHGAFVMMRLTANAFLHHMVRNLVGSLVYVGDGRRPVSWMAEVLAARSRSAGAPTFAA 278 Query: 237 EGLYFDSVEYS 247 GLY SV Y Sbjct: 279 GGLYLASVRYD 289 >gi|330813516|ref|YP_004357755.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter sp. IMCC9063] gi|327486611|gb|AEA81016.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter sp. IMCC9063] Length = 245 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 117/246 (47%), Positives = 160/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+EY+G+ + GWQRQ NG S+Q ++EK++ +T E + +HG+GRTD+GVHA Q Sbjct: 1 MRRYKCIVEYDGTSFVGWQRQTNGYSVQEAVEKSLKSITQEKIRIHGSGRTDTGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + ALN YLK + ISIL+ IVD F AR SAI R+Y Y II R Sbjct: 61 VIHFDSNTNLDEYTITSALNHYLKK-ELISILSTEIVDDNFDARRSAILRTYEYLIINRA 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLA++K +AW I K L+ + + A + G HDFTTFR+ C+ASSPIRTI++ + + Sbjct: 120 APLAIDKNKAWHISKPLNEKLIFAAIKIFEGTHDFTTFRAASCEASSPIRTIEYTEAFAR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I ++SFL Q+RS +G+LKL+G+ KW+ DL+ AL ++DR C LAP GLY Sbjct: 180 NEEILITFQSKSFLQHQVRSMIGALKLIGEEKWSIRDLQSALDSKDRSRCAALAPACGLY 239 Query: 241 FDSVEY 246 V + Sbjct: 240 LLKVSF 245 >gi|157150719|ref|YP_001449723.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis substr. CH1] gi|189030148|sp|A8AVB3|TRUA_STRGC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157075513|gb|ABV10196.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis substr. CH1] Length = 249 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDGEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|258541768|ref|YP_003187201.1| tRNA pseudouridine synthase A [Acetobacter pasteurianus IFO 3283-01] gi|256632846|dbj|BAH98821.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-01] gi|256635903|dbj|BAI01872.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-03] gi|256638958|dbj|BAI04920.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-07] gi|256642012|dbj|BAI07967.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-22] gi|256645067|dbj|BAI11015.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-26] gi|256648122|dbj|BAI14063.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-32] gi|256651175|dbj|BAI17109.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654166|dbj|BAI20093.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-12] Length = 262 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 111/249 (44%), Positives = 158/249 (63%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R+ + +EY+G+G GWQRQK+G S+Q +E+A + V AGRTDSGVHAL Q Sbjct: 10 QRWAVKLEYDGTGLVGWQRQKSGLSVQSLLEEAAARLANNRPVSSITAGRTDSGVHALAQ 69 Query: 61 VAH--FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAH F + + + L+ +LK + +L+ + VD + ARFSAI RSY YRI+ Sbjct: 70 VAHLDFPADVRFSRHSVREGLSYHLK-PHNVVVLDAAQVDTDWSARFSAIWRSYQYRILN 128 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R++ L G+ W + +LD E M+ AA LVG HDFT+FR++ CQA SP+RT+D +++ Sbjct: 129 RRSRPTLLAGQVWHVKSTLDVEKMQEAANILVGSHDFTSFRAVACQAHSPMRTLDQLEIS 188 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + ARSFLH Q+R+ VG+LKLVG G W + +AL+A++R GP APPEG Sbjct: 189 RHGDEVIVFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEG 248 Query: 239 LYFDSVEYS 247 LY + V Y Sbjct: 249 LYLNGVGYD 257 >gi|227891575|ref|ZP_04009380.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ATCC 11741] gi|227866722|gb|EEJ74143.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ATCC 11741] Length = 256 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 R+ + + Y+G+ + G+Q Q N ++Q +EKAI ++ E + V+G+GRTDSGVHAL Sbjct: 3 QRFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALG 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + LN+ L +++ IV FH+R++ + YLYR+ Sbjct: 63 QVVHFDFPHPISAKGMLRGLNSML--PLDCEVVDCKIVPNDFHSRYTTHGKRYLYRVSRG 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ LD E ++ A + G HD+++F + QA S +RTI V Sbjct: 121 EFVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQAKSHVRTIYEAKVYE 180 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I FL+ Q+R V +L +G+GK D + + +DR + AP Sbjct: 181 DKVNDEIVFEFYGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYKVKDRSQARQTAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLKEVYYD 250 >gi|297538368|ref|YP_003674137.1| tRNA pseudouridine synthase A [Methylotenera sp. 301] gi|297257715|gb|ADI29560.1| tRNA pseudouridine synthase A [Methylotenera sp. 301] Length = 272 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GWQ Q NG +Q ++E AI + V VH AGRTD+GVHA QV Sbjct: 1 MRISLCLAYDGANFCGWQSQSNGGGVQDALELAISSIAQHQVRVHAAGRTDTGVHARCQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L +T+ + VD+ FHARFSA RSY Y + Sbjct: 61 VHFDTTSIRPLTAWVRGVNAHL--PETVRVEWAHEVDEDFHARFSAFSRSYQYLLYNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +A L+ E M AA +LVG HDF+ FR+ CQA + R + +V G Sbjct: 119 APALMATKAGWFHLPLNGEAMSEAASYLVGEHDFSGFRASECQAKTATRNMIKSEVKVAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FL Q+R+ +G+L +G G + +++ LQ +DR P P GLY Sbjct: 179 KYFIFEFSANAFLQHQVRNMIGALVYIGKGAYPPIYMKELLQKRDRTLSPPTFSPNGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 TGVGYD 244 >gi|191639397|ref|YP_001988563.1| tRNA pseudouridine synthase A [Lactobacillus casei BL23] gi|239630320|ref|ZP_04673351.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067471|ref|YP_003789494.1| pseudouridylate synthase [Lactobacillus casei str. Zhang] gi|238693010|sp|B3WAI6|TRUA_LACCB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190713699|emb|CAQ67705.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Lactobacillus casei BL23] gi|239527932|gb|EEQ66933.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439878|gb|ADK19644.1| Pseudouridylate synthase [Lactobacillus casei str. Zhang] gi|327383485|gb|AEA54961.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei LC2W] gi|327386676|gb|AEA58150.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei BD-II] Length = 247 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + I IL IVD FHAR+SA + YLYR+ Sbjct: 61 QVISFDYPGNIPAESMLKAMNSLM--PLDIEILKAEIVDADFHARYSAKGKRYLYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N I FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 179 DPVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|57239154|ref|YP_180290.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|58579105|ref|YP_197317.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|62901163|sp|Q5HBA4|TRUA_EHRRW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57161233|emb|CAH58149.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|58417731|emb|CAI26935.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] Length = 246 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 111/247 (44%), Positives = 164/247 (66%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY ++IEY+GS + GWQ+Q N +SIQ +EKAIF + + V+V+GAGRTD+GVHAL Q Sbjct: 1 MRYKIVIEYDGSDFIGWQKQNHNSNSIQEILEKAIFKFSKQHVIVYGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ I+ A+N +L IS I+++++ D FHARFSA RR YLY+I+ R Sbjct: 61 VAHFDLTTDFETYIVRNAINYHL-ISHAIAVVHVEKTDTDFHARFSAKRRYYLYKIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL +++ RAWL+ L+ ENM A ++ G H+F++FR+ CQ+ SPI+T+D+ + Sbjct: 120 SPLTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPIKTVDNLSITYN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I + A SFLH Q+R VG+L G G + ++ ++A +R G AP GLY Sbjct: 180 HPYIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY 239 Query: 241 FDSVEYS 247 F V+YS Sbjct: 240 FVKVDYS 246 >gi|91200879|emb|CAJ73934.1| strongly similar to tRNA pseudouridine synthase I [Candidatus Kuenenia stuttgartiensis] Length = 244 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY G+ Y GWQ QKN S+Q ++ A+ V E V +HGAGRTD+GVHAL Q Sbjct: 1 MRNVRLTIEYEGTNYAGWQWQKNAISVQETLTHAVRTVIREEVEIHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F L +A+N +L I+I +++ +++ FHAR+SA + Y Y ++ Sbjct: 61 VANFKTYSAIPAKQLLRAINFHL--PQDITIKDVADMEEGFHARYSATSKVYRYTVLNDW 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +L + ++ LD M AAQ+L+G HDFT+F + IRTI + ++ Sbjct: 119 LRTSLNRNFCYVYGFPLDLSKMMTAAQYLIGTHDFTSFTTKALDNKDRIRTIKNLEIQKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I V A FL+ +R+ VG+L +G GK + K L+ +R + GP AP +GL Sbjct: 179 GKYIYFVVEANGFLYKMVRTIVGTLLEIGRGKMDVYLIRKLLETGNRDDAGPTAPAKGLC 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 MKEVKY 244 >gi|330943525|gb|EGH45866.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. pisi str. 1704B] Length = 284 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTLKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTHHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VGVEY 260 >gi|325141434|gb|EGC63912.1| tRNA pseudouridine synthase A [Neisseria meningitidis 961-5945] Length = 265 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTIVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTAAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESVP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|118602946|ref|YP_904161.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567885|gb|ABL02690.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 247 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + + Y G+ + GWQ Q N ++Q +E+A+ V V V +GRTD+GVHA Q Sbjct: 1 MKIALGVAYLGTNFHGWQCQKPNIRTVQQVVEQALSSVANHPVRVFCSGRTDAGVHATCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + + NA L ++ + V+ FHARFSAI R Y Y+I + Sbjct: 61 VIHFETNIKRENKVWLFGGNANL--PSDVNFTWVKHVNDNFHARFSAIARQYNYKIHNTK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + K LD M A+++L+G+H+F+ FR CQA S I+TI+ +N Sbjct: 119 VRCSIITAHSLWESKKLDIMAMNKASKYLIGKHNFSAFRGSLCQAKSSIKTIEFIKLNKC 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + + A +FLH +R+ VG+L VG G+ + +++ L + RK+ P AP GLY Sbjct: 179 DDNILLDIKADAFLHHMVRNIVGTLLKVGKGEKSIEWVKEILDNKQRKQAAPAAPSHGLY 238 Query: 241 FDSVEYS 247 F YS Sbjct: 239 FIKAFYS 245 >gi|294789610|ref|ZP_06754844.1| tRNA pseudouridine synthase A [Simonsiella muelleri ATCC 29453] gi|294482411|gb|EFG30104.1| tRNA pseudouridine synthase A [Simonsiella muelleri ATCC 29453] Length = 261 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 142/247 (57%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + + YNGS ++GWQ+Q + ++Q ++E A+ ++ + + V AGRTD+GVHA Q Sbjct: 3 TRYVLTLAYNGSAFYGWQKQTADVPTVQSALEHALSVIAQQPIKVTAAGRTDTGVHATAQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + +++L+ V +FHARF A R Y Y + Sbjct: 63 VVHFDSDANRPISAWVRGVNAHL--PNDVAVLHAQAVASEFHARFDAFARRYRYVLQFAP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA +LD N++ A Q L+G HDF++FR+ CQA SPI+T+ D+ + Sbjct: 121 VRSPLLVGRAGWTHYNLDINNIQAACQFLLGEHDFSSFRAAECQAKSPIKTMYSIDIQAM 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI++ A +FLH IR+ VG+L VG G+ + + + ++ + R + P P+GLY Sbjct: 181 GDLIKLDFHANAFLHHMIRNIVGALVYVGSGRLSVNEFAELIEKRSRLDAPPTFMPDGLY 240 Query: 241 FDSVEYS 247 F +Y Sbjct: 241 FAGADYP 247 >gi|288941328|ref|YP_003443568.1| tRNA pseudouridine synthase A [Allochromatium vinosum DSM 180] gi|288896700|gb|ADC62536.1| tRNA pseudouridine synthase A [Allochromatium vinosum DSM 180] Length = 261 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 136/242 (56%), Gaps = 2/242 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M +EY+G+ + GWQ Q ++Q +E A+ V V+VH AGRTD+GVHAL QV HF+ Sbjct: 1 MGVEYDGTHFHGWQTQSGVRTVQSELEAAVSRVANHPVIVHCAGRTDAGVHALEQVVHFE 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 N L + + VD FHARFSA R Y Y+I+ R+ + Sbjct: 61 TTATRSERSWVLGANVNL--PPDVGVRWAHPVDDGFHARFSAQARHYRYQILARRTRSPI 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 ++ RA + ++LD E MRIAA LVG HDF++FR++ CQA SPIR + + D++ LI Sbjct: 119 QRDRAVWVHEALDLERMRIAAVALVGEHDFSSFRAVACQAKSPIRRVLYLDLSEREGLIT 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A FLH +R+ G L +G G+ + + L+ +DR+ G A P+GLYF + Sbjct: 179 LAIGANGFLHHMVRNIAGVLMAIGRGEASVDWTRELLEVRDRRLGGVTAQPQGLYFVRAD 238 Query: 246 YS 247 Y Sbjct: 239 YP 240 >gi|238897977|ref|YP_002923657.1| pseudouridylate synthase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465735|gb|ACQ67509.1| pseudouridylate synthase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 277 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNG Y+GWQRQ++ SIQ +E A+ + E + V AGRTD+GVHA QV Sbjct: 16 KIALGIEYNGYRYYGWQRQEHVPSIQSCLEHALSKIANESITVCCAGRTDAGVHATAQVV 75 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF V +N YL I++ V+K FHARFSA R Y Y I + Sbjct: 76 HFLTKAVRKEVSWIMGVNTYL--PPDITVRWAKKVEKDFHARFSATARRYRYLIFNDRHR 133 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG- 181 AL LD + M AAQ ++G +DF++FR+ CQ+ +P R + H V+ FG Sbjct: 134 PALFSEGLAHYSMPLDEKKMERAAQCVLGENDFSSFRAAQCQSKTPWRYVHHLKVSRFGM 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ VGSL VG G+ + + L +DR + A GLY Sbjct: 194 HYIMVDIKANAFLHHMVRNIVGSLIEVGIGRQNEHWIAQLLALKDRTQAAVTAKASGLYL 253 Query: 242 DSVEYS 247 SV+Y Sbjct: 254 VSVDYP 259 >gi|294637213|ref|ZP_06715519.1| tRNA pseudouridine synthase A [Edwardsiella tarda ATCC 23685] gi|291089602|gb|EFE22163.1| tRNA pseudouridine synthase A [Edwardsiella tarda ATCC 23685] Length = 275 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 126/244 (51%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV H Sbjct: 17 IALGIEYDGSRYAGWQRQQEVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVH 76 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +NA+L I++ + V FHARFSA R Y Y I + Sbjct: 77 FTTHASRQEGAWTMGVNAHL--PKDIAVRWVKAVSADFHARFSATARRYRYVIYNHRYRP 134 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + LD E M A Q L+G +DF++FR+ CQ+ +P R + H VN +G Sbjct: 135 AVLQSGVTHFYHPLDAERMARAGQALLGENDFSSFRAAQCQSRTPWRNVSHLWVNRYGPY 194 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A +F+H +R+ VGSL VG G + + L A+DR A GLY + Sbjct: 195 VVVDIKANAFVHHMVRNIVGSLLEVGCGNQPEGWIAELLAARDRTLAAATAKAAGLYLVA 254 Query: 244 VEYS 247 V+Y Sbjct: 255 VDYP 258 >gi|239624119|ref|ZP_04667150.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522150|gb|EEQ62016.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 249 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y + + Y+G+ Y GWQ+Q N +IQG +E+ + + GE V V G+GRTD+GVHA Q Sbjct: 1 MNYIIWLSYDGTRYDGWQKQGNTEKTIQGKLERVLEKLDGEPVEVRGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F L + P + + LN YL + I++ + ++FH+R +A+R++Y Y+I Sbjct: 61 VADFQLKGKRAPEEVMEYLNRYL--PEDIAVWRIQTAPERFHSRLNAVRKTYRYQIELGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + LD +M A +L G DF +F S +RT++ Sbjct: 119 KKDVFRRSYYYGLGQELDVASMERAVAYLTGTRDFKSFCGNKKMKKSTVRTLESIRFERL 178 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + I FL +R G+L VG G+ D+ L+A DR+ G APPEGL Sbjct: 179 EDTRLHISFTGNGFLQQMVRILTGTLIEVGQGRRKPEDIRSILEALDRQAAGFTAPPEGL 238 Query: 240 YFDSVEY 246 + + VEY Sbjct: 239 FLEKVEY 245 >gi|91974561|ref|YP_567220.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB5] gi|123749504|sp|Q13F20|TRUA_RHOPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91681017|gb|ABE37319.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB5] Length = 245 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPVLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+++ +++L+ IV F ARFSAIRR Y YRI+ R+ Sbjct: 61 VAHLDIAKPFRADRLRDALNAHVR-PYPVAVLSTEIVPDSFEARFSAIRRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALEIGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVVRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDCVDIITSARSYLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRSACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|162533082|ref|YP_001621406.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str. DC3000] gi|213971672|ref|ZP_03399779.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1] gi|301386519|ref|ZP_07234937.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato Max13] gi|302134665|ref|ZP_07260655.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|118201619|gb|ABK79682.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str. DC3000] gi|213923557|gb|EEB57145.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1] gi|331019139|gb|EGH99195.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 274 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSLKAWVMGANINL--PHDVSVSWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|297620615|ref|YP_003708752.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] gi|297375916|gb|ADI37746.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +Y +II Y+G+ Y GWQ Q N SIQ +E+ + ++T + GAGRTD+GVHA+ Q Sbjct: 1 MKKYKLIIAYDGTQYSGWQMQPNALSIQEVLEEKLKVLTKTRTSLTGAGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + + P +L + + I I+++ V FHAR+SA + Y Y + Sbjct: 61 VAHFKVEAPFNPSLLRLS--LNGLLPKDIRIMDVEEVPLDFHARYSATNKIYYYHLNLGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIHCQASSPIRTIDHFDV 177 EK +W I SL+ E ++ +L+G H+F+ F + +PIRT+ V Sbjct: 119 VQDPFEKQYSWNITNSLNMELLKKGISYLIGTHNFSAFANEANQGAAKKNPIRTLKRISV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + SFL+ +R+ G+L V GK + +++K L+++DR+ G AP + Sbjct: 179 VPERIGMRLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRAAPAK 238 Query: 238 GLYFDSVEY 246 GL+ ++Y Sbjct: 239 GLFLVRIDY 247 >gi|149926375|ref|ZP_01914636.1| tRNA pseudouridine synthase A [Limnobacter sp. MED105] gi|149824738|gb|EDM83952.1| tRNA pseudouridine synthase A [Limnobacter sp. MED105] Length = 254 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G + GWQ Q +G ++Q + KAI + E + + AGRTD+GVHA +Q Sbjct: 1 MNRVVLGLCYDGHEFEGWQTQPHGRTVQDYLTKAIEAIAQEPIALTCAGRTDTGVHARQQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E K +N L +IS+ +D FHARFSA+ R+Y Y + Sbjct: 61 VVHFDTAAERPLTAWVKGVNNSL--PSSISVQGAKQIDSGFHARFSAVSRTYRYYFYSAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + LD MR AA L+G HDF+ FR+ CQA+SP+RT+ ++ Sbjct: 119 VRDPFKR-FMTWVHYPLDLAAMRRAAVCLLGTHDFSAFRASQCQAASPVRTLYALNLIEA 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + +FLH +R+ +GSL VG + + L+ L +++R P +GL Sbjct: 178 DDHCYFEIHGNAFLHHMVRNLMGSLMEVGQHRQSEAWLQDVLVSKNRSLAAKTYPAQGLS 237 Query: 241 FDSVEYS 247 ++EY Sbjct: 238 LWNIEYP 244 >gi|329120625|ref|ZP_08249288.1| tRNA pseudouridine synthase A [Neisseria bacilliformis ATCC BAA-1200] gi|327460849|gb|EGF07183.1| tRNA pseudouridine synthase A [Neisseria bacilliformis ATCC BAA-1200] Length = 269 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R +I+ Y+GS +FGWQ+Q G ++Q ++E+A+ + GE + V AGRTD+GVHA Q Sbjct: 7 TRRALIVAYDGSRFFGWQKQAGGVPTVQAALEEALSGIAGERIAVTAAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + N+ L + +++L + V FHARF A R Y Y + + Sbjct: 67 VVHFDTAAERPGQAWVRGTNSLL--PEGVAVLRVHNVPPHFHARFDACGRRYRYVLQSAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA LD MR AA LVG HDF++FR+ CQA SP++T+ ++ Sbjct: 125 VRSPLLAGRAGWTHTPLDPAPMREAAALLVGTHDFSSFRAAECQAKSPVKTLYSVRLSGT 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + +FLH +R+ VG+L VG G+ + + + A+ R + P P+GLY Sbjct: 185 ARFMALDLHGNAFLHHMVRNIVGALVYVGSGRLSVAGFAELIAAKSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 +Y Sbjct: 245 LTGADYP 251 >gi|258540648|ref|YP_003175147.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705] gi|257152324|emb|CAR91296.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705] Length = 247 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSLM--PLDIEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPATNELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|199598865|ref|ZP_03212276.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001] gi|199590277|gb|EDY98372.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001] Length = 247 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 121/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSLM--PLDIEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPAADELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|221196945|ref|ZP_03569992.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2M] gi|221203615|ref|ZP_03576634.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2] gi|221177549|gb|EEE09977.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2] gi|221183499|gb|EEE15899.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2M] Length = 270 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PPTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHVYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGCDRNRAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|118443953|ref|YP_878363.1| tRNA pseudouridine synthase A [Clostridium novyi NT] gi|118134409|gb|ABK61453.1| tRNA pseudouridine synthase A [Clostridium novyi NT] Length = 245 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+G+ Y GWQ+ N ++IQ IE + + E V + +GRTD+GVHA Sbjct: 1 MRNIKLTIQYDGTRYKGWQKLGNNDNTIQHKIESVLGELLKEEVALIASGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + K L YL I + +++ + FH+R++ + Y YRI Sbjct: 61 QVANFKTDSRISNDEISKYLYKYL--PQDIVVKSVNEASENFHSRYNVKEKVYTYRIHNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ + + LD + M+ A++ +G HDF +F ++ + S ++TI+ Sbjct: 119 EVHDVFTRKYSYHVREKLDLKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTINSITFRK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + IEI FL+ IR VG+L VG K + D++ + +DR AP GL Sbjct: 179 KEDDIEIVFSGNGFLYKMIRILVGTLVEVGLNKISIDDVKDVMDKKDRSIAPETAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 TLTEVKY 245 >gi|3915176|sp|Q45557|TRUA_BACSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|289265|gb|AAA73188.1| unknown [Bacillus sp. KSM-64] Length = 244 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y ++I+Y+G Y GWQR NG ++IQG IE + + G + + G+GRTD+GVHAL Sbjct: 1 MNNYKLMIQYDGGRYKGWQRLGNGENTIQGKIETVLSEMVGRKIEIIGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+ L + + + LN YL IS+ +++V +FH+R++A ++YLY+I Sbjct: 61 QVANVKLSENFTVKEVKEYLNRYL--PHDISVTEVTLVPDRFHSRYNAKDKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + I K L +NM A+Q VG HDFT F + + + RTI + Sbjct: 119 DYTHPFMRKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNAKSKKKTNTRTIHSITIQD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FL+ +R VG+L VG G+ + L+++DR + G A GL Sbjct: 179 NQGFIDIRVCGDGFLYNMVRKMVGTLIEVGLGEKEPEQVLTILESKDRSQAGF-ADATGL 237 Query: 240 YFDSVEY 246 Y + + + Sbjct: 238 YLEGISF 244 >gi|258509450|ref|YP_003172201.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG] gi|257149377|emb|CAR88350.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG] gi|259650729|dbj|BAI42891.1| tRNA pseudouridine synthase [Lactobacillus rhamnosus GG] Length = 247 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSLM--PLDIEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPAANELVFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|116495915|ref|YP_807649.1| tRNA pseudouridine synthase A [Lactobacillus casei ATCC 334] gi|122262685|sp|Q035B5|TRUA_LACC3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116106065|gb|ABJ71207.1| Pseudouridylate synthase [Lactobacillus casei ATCC 334] Length = 247 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + I IL IVD FHAR+SA + YLYR+ Sbjct: 61 QVISFDYPGNIPAESMLKAMNSLM--PLDIEILKAEIVDADFHARYSAKGKRYLYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N I FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 179 DSVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|154249373|ref|YP_001410198.1| tRNA pseudouridine synthase ACD [Fervidobacterium nodosum Rt17-B1] gi|171769414|sp|A7HKV8|TRUA_FERNB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154153309|gb|ABS60541.1| tRNA pseudouridine synthase A [Fervidobacterium nodosum Rt17-B1] Length = 246 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + Y+G+ +FG+Q Q N ++QG +EKA+ V + + AGRTD+GVHA Q Sbjct: 1 MRRVAIEFSYDGTDFFGYQIQNNVRTVQGELEKALEKVFKIHIDTYAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V FD + + + A+NA L I I + F+ R+ A RR Y Y I T Sbjct: 61 VVSFDCPNDRLMENDIKNAINANL--PGDIYIKKVWFTHPTFNPRYEAKRRIYHYYIDTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ + W P LD E MRIAA++L+G HDF +F + + IRTI++ + Sbjct: 119 KSKNLFTRRYVWWFPYELDIEKMRIAAKYLIGEHDFISFSKKGEENTKTIRTINNLRIIE 178 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N LI IRV SFL +RS V +L VG G W +++ L+++DR + LAP G Sbjct: 179 IKNGLILIRVEGISFLRGMVRSIVANLVRVGTGIWEPEKVKEVLESKDRSKSAGLAPAHG 238 Query: 239 LYFDSV 244 L+ V Sbjct: 239 LFLYKV 244 >gi|261401977|ref|ZP_05988102.1| tRNA pseudouridine synthase A [Neisseria lactamica ATCC 23970] gi|269207832|gb|EEZ74287.1| tRNA pseudouridine synthase A [Neisseria lactamica ATCC 23970] Length = 267 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 9 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGESVATTVAGRTDTGVHATAQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 69 VVHFDTAARRPAQAWIRGTNAAL--PEGIAVLHARQTSPGFHARFDAYGRHYRYLLESSP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 127 VRSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQT 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 187 GGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSTLIRERSRLKAPPTFMPDGLY 246 Query: 241 FDSVEYS 247 V+Y Sbjct: 247 LTGVDYP 253 >gi|21911175|ref|NP_665443.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS315] gi|28895139|ref|NP_801489.1| tRNA pseudouridine synthase A [Streptococcus pyogenes SSI-1] gi|25453306|sp|Q8K5W2|TRUA_STRP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21905386|gb|AAM80246.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS315] gi|28810384|dbj|BAC63322.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes SSI-1] Length = 249 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ + G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIEKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P +L+ + M+ A LVG HDFT F + + +RTI V+ Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQDAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEICYE 248 >gi|46445962|ref|YP_007327.1| putative tRNA pseudouridylate synthase I [Candidatus Protochlamydia amoebophila UWE25] gi|51316632|sp|Q6MEE7|TRUA1_PARUW RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|46399603|emb|CAF23052.1| putative tRNA pseudouridylate synthase I [Candidatus Protochlamydia amoebophila UWE25] Length = 256 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQ Q N SSIQ I++A+ ++ E VV+ G+GRTD+GVHA Sbjct: 1 MHCYKLTIAYDGTNYSGWQIQPNASSIQQKIQEALCILLKKEKVVLVGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAHF L +LN L I I + V +FH+++SAIR+ Y Y + Sbjct: 61 QVAHFHFQDYIDLSRLHVSLNGLL--PRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS---IHCQASSPIRTIDHFD 176 + ++ +W + +D ++ AA G HDFT+F + A +P+RT+ D Sbjct: 119 KVMDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + FL+ +R+ VG+L V K ++ + A++R++ APP Sbjct: 179 IKPNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAAPP 238 Query: 237 EGLYFDSVEYS 247 EGL+ V Y Sbjct: 239 EGLFLIQVFYE 249 >gi|325689043|gb|EGD31051.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK115] Length = 249 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAEHNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|295102064|emb|CBK99609.1| pseudouridylate synthase I [Faecalibacterium prausnitzii L2-6] Length = 251 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL + Sbjct: 1 MNYLLKLSYDGTNYCGFQVQPNGRSVAAAFQDALEAVLGCRPDIKGCSRTDAGVHALGFM 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L ALN +L I L +V FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPAAKLPLALNQHL--PPDIRALEARVVPDDFHARYAAHTKTYLYRIHNSPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS---SPIRTIDHFDVN 178 +P LD + M+ AAQ+ VG+HDF + A+ +RTI DV Sbjct: 119 DSPFAARYYTKVPGRLDADRMQQAAQYFVGKHDFLALCASGSSAAAHGDTVRTITACDVQ 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+I V A +L+ +R G+L G G+ + L +++RK GP +G Sbjct: 179 RRGDDIDITVTADGYLYNMVRILAGTLCEAGAGRLAPEAVPGILASRERKNAGPTLAAKG 238 Query: 239 LYFDSVEYS 247 L+ SV+Y Sbjct: 239 LFLKSVDYD 247 >gi|227533991|ref|ZP_03964040.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188368|gb|EEI68435.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 254 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 8 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 67 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + I IL IVD FHAR+SA + YLYR+ Sbjct: 68 QVISFDYPGNIPAESMLKAMNSLM--PLDIEILKAEIVDADFHARYSAKGKRYLYRVARG 125 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 126 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 185 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N I FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 186 DPVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 245 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 246 GLYLKEVYY 254 >gi|296315347|ref|ZP_06865288.1| tRNA pseudouridine synthase A [Neisseria polysaccharea ATCC 43768] gi|296837693|gb|EFH21631.1| tRNA pseudouridine synthase A [Neisseria polysaccharea ATCC 43768] Length = 267 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 9 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 69 VVHFDTAARRPAQAWIRGTNAVL--PEGIAVLHARQTAPGFHARFDAYGRHYRYLLESSP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 127 VRSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQA 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 187 GGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSALIQERSRLKAPPTFMPDGLY 246 Query: 241 FDSVEYS 247 V+Y Sbjct: 247 LTGVDYP 253 >gi|315221272|ref|ZP_07863195.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211] gi|315189631|gb|EFU23323.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211] Length = 249 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + +G VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHGFAGFQRQLHARSVQEEIEKTLTKINSGASVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V++ FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDGEKLRFALDT--QTPEDIDFISVEEVNEAFHSRYCKHSKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD + A + L G HDFT F + + IRTI + Sbjct: 119 RPKNPMMRYYATHYPYPLDLSLIEEAIEKLEGTHDFTGFTASGTSVENKIRTITEARLVF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+G+ +++ L +DR GP A P Sbjct: 179 DEKRNFLMFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKDRHLAGPTAAPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|291542954|emb|CBL16064.1| pseudouridylate synthase I [Ruminococcus bromii L2-63] Length = 266 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I Y+G + GWQ Q+N ++Q + + A+ + G V G RTDSGVHA Sbjct: 11 RNLLLTISYDGKEFHGWQIQQNAMTVQEAFQTALSKIIGNDFDVKGCSRTDSGVHANMYC 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 P L ALN +L +I++L+ V FHAR+S + Y+Y+I + Sbjct: 71 ISLKTEHPIKPERLKAALNRWL--PLSIAVLDCKEVAPDFHARYSCTSKEYIYKIWNSEV 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTIDHFDVNSF 180 G A +D + AAQ VGRHDFT+F ++ + + R + F V Sbjct: 129 RNPFLDGYALHYRYKIDENLLDKAAQAYVGRHDFTSFCTLDNREKGDMTRNVKAFSVTRE 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ ++V A FL+ +R VG+L + GK ++ ++ ++RK GP A GLY Sbjct: 189 GDLVTMKVEADGFLYNMVRIMVGTLLRIQQGKIAPDEIPSIIEKKNRKYSGPTAQACGLY 248 Query: 241 FDSVEYS 247 + V Y Sbjct: 249 LNCVNYE 255 >gi|217077259|ref|YP_002334977.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B] gi|226708660|sp|B7IHS2|TRUA_THEAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217037114|gb|ACJ75636.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B] Length = 244 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 130/246 (52%), Gaps = 6/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + Y+G+ +FG+Q Q N ++QG +E A+ + E + AGRTD+GVHA Q Sbjct: 1 MKRFAIEFAYDGTKFFGYQGQPNVRTVQGDLEDALERIFKERIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F+ + ALNA L D I + +VDK F+ RF+A +R Y Y I T Sbjct: 61 VAAFNCPIERLTETDIKNALNANL--PDDIYVKKAWVVDKSFNPRFAATKRIYHYFISTN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W LD E MR AA L G HDF++F+ +P+RTI + + Sbjct: 119 EK-DVFMRNYVWNFRYDLDIEAMRKAASFLEGEHDFSSFKK-GKDEKNPVRTIYRIRILT 176 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 LI IRV RSFL + +R+ VGSL VG G+W + + L+ + R+E APP G Sbjct: 177 LKKGLILIRVEGRSFLRSMVRNIVGSLVRVGLGQWKPEKILEVLEKRSRQEAAGTAPPHG 236 Query: 239 LYFDSV 244 LY V Sbjct: 237 LYLYKV 242 >gi|223935594|ref|ZP_03627510.1| tRNA pseudouridine synthase A [bacterium Ellin514] gi|223895602|gb|EEF62047.1| tRNA pseudouridine synthase A [bacterium Ellin514] Length = 270 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 134/248 (54%), Gaps = 6/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 ++ + I Y+G Y GWQ QK+G +Q +E+A+ + + +H + RTD+GVHA+ VA Sbjct: 5 KFKLTIAYDGKNYSGWQVQKSGIGVQQRVEEALTKLFPSVGRIHSSSRTDTGVHAIGMVA 64 Query: 63 HFDLVR---EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H ++ + L A+NA+L + I +++ V FHARF A + Y Y + + Sbjct: 65 HMEIPKAEFRMTSEKLALAINAHL--PEDIRVMSAQKVAADFHARFDAAGKQYRYFVWNQ 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVN 178 A L + +AW +PK LD + MR AA+ G+HDF +F + + S +RT+ D+ Sbjct: 123 TAMNPLLREQAWQVPKELDLKAMRSAAKLFPGKHDFRSFAASRNYEVESTVRTLARCDIK 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+L+ + FL+ R VG+L VG GK + D++K L+ +DR+ G AP G Sbjct: 183 KSGSLLTFIIEGDGFLYKMCRGIVGTLVQVGQGKIAAADIKKILETRDRRVAGMTAPAHG 242 Query: 239 LYFDSVEY 246 L V Y Sbjct: 243 LVLWKVFY 250 >gi|313669058|ref|YP_004049342.1| tRNA pseudouridine synthase [Neisseria lactamica ST-640] gi|313006520|emb|CBN87984.1| tRNA pseudouridine synthase [Neisseria lactamica 020-06] Length = 267 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 9 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 69 VVHFDTAARRPAQAWIRGTNAAL--PEGIAVLHARQTAPGFHARFDAYGRHYRYLLESSP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 127 VRSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQT 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 187 GGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSALIRERSRLKAPPTFMPDGLY 246 Query: 241 FDSVEYS 247 V+Y Sbjct: 247 LTGVDYP 253 >gi|240000017|ref|ZP_04719941.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] gi|268595826|ref|ZP_06129993.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] gi|268549215|gb|EEZ44633.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] Length = 265 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDITAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|260887817|ref|ZP_05899080.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|330838710|ref|YP_004413290.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|260862493|gb|EEX76993.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|329746474|gb|AEB99830.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] Length = 258 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 C+ + Y+G+ Y G+QRQ ++Q +E+ + LV G+ + + AGRTD+GVHA+ Q Sbjct: 14 RNVCLTVAYDGTAYHGFQRQSPPIRAVQNVLEEKLALVFGDAIELAAAGRTDAGVHAMGQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + +A+N+ L I + + F AR SA +SY+YRI Sbjct: 74 VVNFFTDGRIPTERIVRAMNSVL--PPDIVVKAAREEGRDFSARHSAKSKSYIYRIQEGD 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P + AW + LD M AA L+G HDF+ FR+ P+RT+ + Sbjct: 132 TPNPFSERYAWYVGTPLDLAAMNEAAALLLGTHDFSAFRAAGGAPMLPVRTMYSAEGRRI 191 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G IE R A FL+ R+ VG+L VG G+ T D L +++RK AP GL Sbjct: 192 EGERIEFRFHANGFLYHMARNIVGTLVDVGKGRRTRADFAAILASRERKRASATAPACGL 251 Query: 240 YFDSVEY 246 + +SVEY Sbjct: 252 FLESVEY 258 >gi|325686853|gb|EGD28878.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK72] gi|332359857|gb|EGJ37671.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1056] Length = 249 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I +++ V + FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEDRDEEKLRFALDT--QTPEDIDFISVEQVSEDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|326803064|ref|YP_004320882.1| tRNA pseudouridine synthase A [Aerococcus urinae ACS-120-V-Col10a] gi|326650503|gb|AEA00686.1| tRNA pseudouridine synthase A [Aerococcus urinae ACS-120-V-Col10a] Length = 264 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 129/251 (51%), Gaps = 6/251 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHAL 58 M RY I Y+G+ Y G+Q Q NG SIQ ++EKA+ L+T G+ + V+G+GRTDSGVHAL Sbjct: 1 MPQRYKATIAYDGTPYVGFQVQPNGPSIQAALEKALKLMTKGQEIPVYGSGRTDSGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD E L +ALN+ L D I + + V+K FHAR+ A R++YLY++ Sbjct: 61 GQVVHFDYPSEIETEGLLRALNSIL--DDAICVKTVEPVEKHFHARYHAQRKAYLYKVSL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 E+ P D ++ A L+G H+F +F S + R I + Sbjct: 119 APFVSPFERHYVLHHPYRTDVSRIQAALPALIGAHNFKSFCSTKTDKTVFDREIYRAECQ 178 Query: 179 S--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G + FL+ +R VG+ +GDG +L L+ QDR GP A Sbjct: 179 ASWDGQTLTFYFEGNGFLYNMVRIIVGTCLQIGDGLRPVENLSDLLRIQDRNAAGPTAKA 238 Query: 237 EGLYFDSVEYS 247 GLY V+Y Sbjct: 239 HGLYLHHVDYP 249 >gi|224477189|ref|YP_002634795.1| tRNA pseudouridine synthase A [Staphylococcus carnosus subsp. carnosus TM300] gi|254764865|sp|B9DM46|TRUA_STACT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222421796|emb|CAL28610.1| putative tRNA pseudouridine synthase A [Staphylococcus carnosus subsp. carnosus TM300] Length = 267 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 119/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q++G ++Q EK + + V +H + RTD GVHA+ Q Sbjct: 1 MRILVKISYQGSNFLGFQIQQHGRTVQQQFEKILKRMHKRHVRIHPSSRTDRGVHAIEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L D I + +SIVD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIAPDKWQYAMNSAL--PDDIYVNEVSIVDDDFHCRYDCVGKRYRYKVYQGKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 G SLD E M AAQ +G HDFT F S + S RT+ ++ Sbjct: 119 RDVFMSGLKTFYADSLDLEKMNEAAQQFIGTHDFTGFCSQKTEVESKERTLYQSEIIKTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + V FL+ +R V L VG GK ++ L+A+DRK+ AP EGLY Sbjct: 179 NGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRQPEEVPILLEAKDRKQVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|325697516|gb|EGD39402.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK160] Length = 249 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYNFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A HL G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAHLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|294101662|ref|YP_003553520.1| tRNA pseudouridine synthase A [Aminobacterium colombiense DSM 12261] gi|293616642|gb|ADE56796.1| tRNA pseudouridine synthase A [Aminobacterium colombiense DSM 12261] Length = 271 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY ++ Y+G+ + GWQRQ +S+Q S+E+A+ + + + AGRTD GVH+ QV Sbjct: 1 MRYAAVVSYDGTAFCGWQRQLGVASVQQSLEEALSKLCATSIPIVAAGRTDGGVHSRGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F L W P L A+N YL +T+ I+ + V++ F ARF A+ R Y Y I A Sbjct: 61 ISFSLPSFWEPRRLVLAINFYL--PETVRIMGVFPVEESFSARFCALWREYRYYIWHGPA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 RAW D ++ A ++L G H+F F I +RTI G Sbjct: 119 FPPYLAQRAWWNRWQWDKTAVKKACEYLEGTHNFKAFCPIKECPEDTVRTILRIKYLRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGL 239 +L I V SFL +RS VGSL LVG GK +++ L + +DR G AP GL Sbjct: 179 HLSVITVRGNSFLMNMVRSIVGSLDLVGKGKNDPEWIKELLDDEKKDRTYAGMTAPAHGL 238 Query: 240 YFDSVEYS 247 YF V Y+ Sbjct: 239 YFWKVCYN 246 >gi|240129104|ref|ZP_04741765.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] gi|268687486|ref|ZP_06154348.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] gi|268627770|gb|EEZ60170.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] Length = 265 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRTGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|324989944|gb|EGC21886.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK353] Length = 249 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPDERDEEKLRFALDT--QTPEDIDFISVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITDAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTADPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|294012442|ref|YP_003545902.1| tRNA pseudouridine synthase A [Sphingobium japonicum UT26S] gi|292675772|dbj|BAI97290.1| tRNA pseudouridine synthase A [Sphingobium japonicum UT26S] Length = 248 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 128/247 (51%), Positives = 164/247 (66%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q ++E AIF VTGE V VH AGRTD+GVH L Sbjct: 1 MARFAFTVEFDGRPFMGWQRQAHGPSVQQAMEDAIFSVTGERVAVHAAGRTDAGVHGLGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ ++ P L +ALNA L+ ++IL V +HARFS RSY+YRI+ R+ Sbjct: 61 RAHADIAKDMTPFRLMEALNARLR-PAPVAILACETVPDDWHARFSCTGRSYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E G AW + + LD E M+ AAQ LVGRHDFTTFRS+HCQA SP++T+D DV Sbjct: 120 APLTWESGLAWRVIQPLDAEAMQRAAQLLVGRHDFTTFRSVHCQAESPVKTLDRLDVERA 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L +VG G+W+ DLE A A+DR G APP+GLY Sbjct: 180 GDRLAIHAEARSFLHHQVRSMVGCLVMVGMGRWSVGDLEAARDAKDRAALGLNAPPDGLY 239 Query: 241 FDSVEYS 247 F S Y Sbjct: 240 FVSAHYP 246 >gi|291557656|emb|CBL34773.1| pseudouridylate synthase I [Eubacterium siraeum V10Sc8a] Length = 243 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 120/242 (49%), Gaps = 4/242 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA V + Sbjct: 1 MAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAFVFNVKTT 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 K NA L I+ L+ + FHARF + + Y+YRI T Sbjct: 61 CPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYRIYTGDVRDVFSA 118 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDVNSFGNLIE 185 A P D E MR AA+ +VG HDF +F + S +RT+ DV G+ +E Sbjct: 119 DTALHYPYKPDIEKMRKAARLIVGEHDFASFCKAEAKEHLLSTVRTVYSIDVEQTGDFVE 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I+V FLH +R VG+L + +GK T D+ AL DR+ G P GLY + V Sbjct: 179 IKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVSPCGLYLNKVF 238 Query: 246 YS 247 Y Sbjct: 239 YE 240 >gi|257454808|ref|ZP_05620059.1| tRNA pseudouridine synthase A [Enhydrobacter aerosaccus SK60] gi|257447741|gb|EEV22733.1| tRNA pseudouridine synthase A [Enhydrobacter aerosaccus SK60] Length = 268 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + IE+ G+ Y GWQRQ+ SIQ +E A+ + E + V AGRTD+GVHA +AH Sbjct: 6 YAISIEFIGTRYRGWQRQQEVDSIQQHVEAALSKIANEPIEVIAAGRTDAGVHASNMIAH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P +A N+ L D I++ + ++ +FHARFSAI R Y Y + Sbjct: 66 FQTSATRQPYNWLRAANSLL--PDDIAVRWIQVMPAEFHARFSAIARRYRYITLNHPFRP 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + L+ + M+ AA +L G HDFT+FR+ CQ++ P+R + + G L Sbjct: 124 AILNQQITHEYAPLNVQLMQQAATYLEGTHDFTSFRAASCQSNQPVRHVHFAKLIQHGEL 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A FLH +R+ +G+L +G G+ +E L +++R A +GLYF + Sbjct: 184 LVLDIQADGFLHHMVRNIMGTLFEIGRGEKPVAWIEALLLSKNRSLAAATASADGLYFIN 243 Query: 244 VEYS 247 Y Sbjct: 244 ALYP 247 >gi|325199128|gb|ADY94584.1| tRNA pseudouridine synthase A [Neisseria meningitidis G2136] Length = 265 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAVRPQQAWIRGVNAHL--PEGIAVLHARQVALEFHARFDAYGRHYRYLLESSP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA +L+G DF++FR+ CQA SPI+TI ++ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGPMRQAATYLIGEQDFSSFRAAECQAKSPIKTIYRANLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEYS 247 V+Y Sbjct: 245 LTGVDYP 251 >gi|161521167|ref|YP_001584594.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|189352656|ref|YP_001948283.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|42559801|sp|Q83WJ5|TRUA_BURM1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28971662|dbj|BAC65262.1| tRNA pseudouridine synthase [Burkholderia multivorans] gi|160345217|gb|ABX18302.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|189336678|dbj|BAG45747.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] Length = 270 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PPTVAVQWAKSMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHLYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRNRAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|107026755|ref|YP_624266.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia AU 1054] gi|116692053|ref|YP_837586.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia HI2424] gi|170735954|ref|YP_001777214.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia MC0-3] gi|123370548|sp|Q1BM62|TRUA_BURCA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123464580|sp|A0AZ67|TRUA_BURCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688629|sp|B1K370|TRUA_BURCC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|105896129|gb|ABF79293.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia AU 1054] gi|116650053|gb|ABK10693.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia HI2424] gi|169818142|gb|ACA92724.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia MC0-3] Length = 270 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLEREVFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|309378319|emb|CBX23065.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 267 Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 9 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 69 VVHFDTAARRPAQAWIRGTNAAL--PEGIAVLHARQTAPGFHARFDAYGRHYRYLLESSP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 127 VRSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQT 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 187 GGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSTLIRERSRLKAPPTFMPDGLY 246 Query: 241 FDSVEYS 247 V+Y Sbjct: 247 LTGVDYP 253 >gi|299771694|ref|YP_003733720.1| tRNA pseudouridine synthase A [Acinetobacter sp. DR1] gi|298701782|gb|ADI92347.1| tRNA pseudouridine synthase A [Acinetobacter sp. DR1] Length = 265 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 131/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + V E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKVANEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTHAIRPETGWLRGANSQL--PKDISIQWIKLMDESFHARFKATARRYRYIIYNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVKKMIEAASKFEGTHNFESFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIEADGFLHHMVRNIVGCLLEIGQGMYEIDHIDTMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCNYP 246 >gi|124267346|ref|YP_001021350.1| tRNA pseudouridine synthase A [Methylibium petroleiphilum PM1] gi|166228739|sp|A2SHS6|TRUA_METPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124260121|gb|ABM95115.1| Pseudouridylate synthase [Methylibium petroleiphilum PM1] Length = 260 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y G Y GWQ Q +G ++Q +E+A+ V AGRTD+GVHAL QV Sbjct: 1 MRLALGLSYRGGAYRGWQSQPDGLTVQDRVEEALARFADRPVRTVCAGRTDAGVHALNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D E P + N YL I++ VD FHAR SA R Y Y ++ Sbjct: 61 VHLDTEIEREPFSWVRGTNRYL--PPDIAVQWCRPVDAAFHARNSARGRRYAYLLLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+E G + + LD MR AA HL+G HDF+ FRS CQA+SP++ + ++ G Sbjct: 119 RPAIEAGAVGWVFRPLDATPMREAAAHLIGEHDFSAFRSAECQAASPVKNLRRIEIVRCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH +R+ +G L VG G L + L A DR+ P P+GLYF Sbjct: 179 AYWRFEFEASAFLHHMVRNLMGCLLAVGQGVRAPQWLAEVLAAGDRRRAAPTFAPDGLYF 238 Query: 242 DSVEYS 247 +Y Sbjct: 239 LGPQYD 244 >gi|56478134|ref|YP_159723.1| tRNA pseudouridine synthase A [Aromatoleum aromaticum EbN1] gi|62901200|sp|Q5P1J2|TRUA_AZOSE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56314177|emb|CAI08822.1| pseudouridylate synthase A [Aromatoleum aromaticum EbN1] Length = 264 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 123/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY GS + G+Q Q +G ++Q +E AI + V +H AGRTD+GVHA QV Sbjct: 1 MRIVLGVEYAGSAFEGFQSQAHGRTVQDHLEAAIGHIAAHPVRLHCAGRTDAGVHATAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N+ L + + + FHARF A+ R Y Y + Sbjct: 61 VHFDTESVRPNSGWVRGVNSRLSSP--VVVRWATEAGDGFHARFCAVSRRYRYILHNSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL GR LD M AA+ L G HDF+ FR+ CQA SP++ + V G Sbjct: 119 RPALLAGRVGWFHPPLDEIAMAEAARCLEGWHDFSAFRAAGCQAKSPVKLMHEVRVQRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A +FLH +R+ VG+L VG G+ ++ L + L A+DR +GLY Sbjct: 179 DYVVFDFWANAFLHHMVRNLVGALVYVGKGRHSAAWLAEVLAARDRSLAALTFSADGLYL 238 Query: 242 DSVEY 246 VEY Sbjct: 239 CGVEY 243 >gi|312962053|ref|ZP_07776550.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6] gi|311283863|gb|EFQ62447.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6] Length = 284 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++EKA+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVPTVQETLEKALSKVADSSVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTMKAWVMGANINL--PHDVSVSWAKVMPAHFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQHLVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 136 RPAHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 196 KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVDWAREVLESRIRRTGGVTAHPFGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VDVEY 260 >gi|78062974|ref|YP_372882.1| tRNA pseudouridine synthase A [Burkholderia sp. 383] gi|123728751|sp|Q393X8|TRUA_BURS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77970859|gb|ABB12238.1| Pseudouridylate synthase [Burkholderia sp. 383] Length = 270 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLDREVFSWVRGTNAFL--PSTVAVQWAKPMPETFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFVHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|33519947|ref|NP_878779.1| tRNA pseudouridine synthase A [Candidatus Blochmannia floridanus] gi|42559760|sp|Q7U356|TRUA_BLOFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33504293|emb|CAD83185.1| tRNA pseudouridine synthase A [Candidatus Blochmannia floridanus] Length = 252 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + +EY+GS Y GWQ+QK SSIQ +E A+ V+ E ++V GRTDSGVHAL Q Sbjct: 1 MQKLVLGVEYDGSMYCGWQKQKCVSSIQSCLEYALSKVSSESILVFCGGRTDSGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HF+ + +N +L + I + +S VD FHARFSAI R Y Y I + Sbjct: 61 IVHFETQLKCSRSAWTLGVNCHL--PNDICVRWVSEVDNSFHARFSAISRRYCYFIYNNR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ R W + LD M AAQ+L+G +DF+ FRS Q+ S R I H V Sbjct: 119 IRSAVFCKRVWSYSRFLDVNKMSKAAQYLLGENDFSVFRSSGSQSCSTNRNIYHLRVIRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I + A +FL+ +R+ VGSL VG G T + + L+ AP GLY Sbjct: 179 GHYVVIDIRANAFLYRMVRNIVGSLVEVGCGNKPVTWILELLKNYRGSLNRITAPASGLY 238 Query: 241 FDSVEYS 247 ++Y Sbjct: 239 LVEIKYP 245 >gi|74317934|ref|YP_315674.1| tRNA pseudouridine synthase A [Thiobacillus denitrificans ATCC 25259] gi|123759044|sp|Q3SHL7|TRUA_THIDA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|74057429|gb|AAZ97869.1| tRNA pseudouridine synthase [Thiobacillus denitrificans ATCC 25259] Length = 260 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY G G+ GWQ Q +Q ++EKA+ + GE + V AGRTD+GVHA Q Sbjct: 1 MMRIAVGLEYRGVGFCGWQSQPQACGVQDAVEKAVSAIAGEAITVTAAGRTDTGVHAALQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + +N++L +++L VD +FHARF+A R Y Y ++ Sbjct: 61 IVHFDTTSVRPLTAWVRGVNSHL--PAGVAVLWAREVDAEFHARFAAFERGYRYVLLNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L G + LD M AA L+GRHDF+ FR+ CQA SP++ + + Sbjct: 119 VRPGLNAGLVGWHHRPLDVACMNRAASPLIGRHDFSAFRAAECQARSPVKELRRALIERR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + A FLH +R+ +G L +G G L + L +DR P GLY Sbjct: 179 GDYLLCDFRADGFLHHMVRNLMGCLVQIGAGGRPPEWLHEVLAGRDRTRAAPTFEAAGLY 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 LTHIRYP 245 >gi|262280848|ref|ZP_06058631.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus RUH2202] gi|262257748|gb|EEY76483.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus RUH2202] Length = 265 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 131/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + V E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKVANEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTHAIRPETGWLRGANSQL--PKDISIQWIKLMDESFHARFKATARRYRYIIYNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQPLDVQKMIEAASKFEGTHNFESFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEINHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCNYP 246 >gi|295425622|ref|ZP_06818309.1| tRNA pseudouridine synthase A [Lactobacillus amylolyticus DSM 11664] gi|295064638|gb|EFG55559.1| tRNA pseudouridine synthase A [Lactobacillus amylolyticus DSM 11664] Length = 262 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M++ Y+G + G+Q Q N ++QG++E+A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMLMAYDGHLFHGFQVQPNQRTVQGTVEEALKKMTKGKRVIVEGSGRTDAGVHAMGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V FD +P + ALN+ + I I FH R+S + Y YR+ Sbjct: 63 VIQFDYPGNRIPAEKMILALNSMM--PMDIIFKECEIASPDFHVRYSIKGKWYRYRMSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ P +D M+ AA+ L+G+HDFT+F + Q + +RT+ + +V Sbjct: 121 HFVNPFKRFYTGHYPYPIDVSKMKEAAKDLLGKHDFTSFAASGGQIKNKVRTMYYVNVEK 180 Query: 180 FG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ +R V +L +G GK D + ++A+DR + AP Sbjct: 181 NESQNELVFDFICSGFLYNMVRILVATLLEIGSGKRPVHDFPRIIKAKDRLQVTQTAPAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|171321983|ref|ZP_02910866.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MEX-5] gi|171092713|gb|EDT37998.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MEX-5] Length = 270 Score = 277 bits (710), Expect = 8e-73, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRTDFSWVRGTNAFL--PSTVSVQWAKPMADTFHARFAAFERTYYYVLYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 AHVGYP 244 >gi|325261709|ref|ZP_08128447.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324033163|gb|EGB94440.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 248 Score = 277 bits (710), Expect = 8e-73, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 126/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+GS Y GWQRQK+ ++QG +E+A+ VTG + G+GRTD GVHA Sbjct: 1 MRTYKLTVVYDGSRYQGWQRQKSTEKTVQGILERAVTEVTGRQTEIDGSGRTDGGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + C +LN L + I + + +V FHAR++A + Y Y I TR Sbjct: 61 QTASMVLPGKVEETGFCASLNNAL--PEDIRVKEMKLVKNGFHARYNAKGKRYEYFIDTR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P L+ M AA++L+G HDF F + S IRTI + Sbjct: 119 EKPDVFTRKYCYHYPYELNIPAMEEAAEYLIGTHDFAGFTDKKDE-MSTIRTIYDIIIEK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R G+L +G G+ + AL+A DR+ G LAP GL Sbjct: 178 QDSKIRMEFYGTGFLYHMVRILTGTLLEIGTGEKRPHEAAAALEAGDREYAGFLAPARGL 237 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 238 FLKEVYYN 245 >gi|283795894|ref|ZP_06345047.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|291076529|gb|EFE13893.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] Length = 275 Score = 277 bits (710), Expect = 9e-73, Method: Composition-based stats. Identities = 87/269 (32%), Positives = 141/269 (52%), Gaps = 24/269 (8%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R ++++Y+GS Y GWQ+Q N ++IQG +E + + GE V +HG+GRTD+GVHAL Sbjct: 1 MYRNIKIVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLAGEPVEIHGSGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPV--------------------ILCKALNAYLKISDTISILNLSIVD 98 QVA+F L + + LN YL + I++++ V Sbjct: 61 GQVANFRLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYL--PEDIAVISAMEVP 118 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 ++FH+R +A+ ++YLY+I T E+ + + + LD M+ AA+ L+G HDF F Sbjct: 119 ERFHSRLNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLLAMKEAAKLLLGSHDFRAF 178 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 S S +R + +++ G+ + + FL+ +R G+L +G + T + Sbjct: 179 SSAKRMKKSTVRELRKIEIHRDGSRVLLEFTGNGFLYNMVRILTGTLIEIGLHRRTVDSV 238 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 KAL++QDR+ G AP EGL SV Y Sbjct: 239 RKALESQDRENAGFTAPAEGLLLKSVRYD 267 >gi|328944888|gb|EGG39047.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1087] Length = 249 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYNFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 FGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERKFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|269139760|ref|YP_003296461.1| tRNA pseudouridine synthase A [Edwardsiella tarda EIB202] gi|267985421|gb|ACY85250.1| tRNA pseudouridine synthase A [Edwardsiella tarda EIB202] gi|304559626|gb|ADM42290.1| tRNA pseudouridine synthase A [Edwardsiella tarda FL6-60] Length = 275 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 88/244 (36%), Positives = 125/244 (51%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV H Sbjct: 17 LALGIEYDGSRYAGWQRQREVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVH 76 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +NA+L +++ + V FHARFSA R Y Y I + Sbjct: 77 FTTHALRQEGAWTMGVNAHL--PKDVAVRWVKSVSPDFHARFSATARRYRYVIYNHRYRP 134 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + LD E M A Q L+G +DF+ FR+ CQ+ +P R + H VN +G Sbjct: 135 AVLQSGVTHCYLPLDAERMARAGQALLGENDFSAFRAAQCQSRTPWRNVSHLRVNRYGPY 194 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A +F+H +R+ VGSL VG G + + + L +DR A GLY + Sbjct: 195 VVVDIKANAFVHHMVRNIVGSLLEVGCGNQPESWIAELLAGRDRTLAAATAKAAGLYLVA 254 Query: 244 VEYS 247 V+Y Sbjct: 255 VDYP 258 >gi|160934132|ref|ZP_02081519.1| hypothetical protein CLOLEP_02995 [Clostridium leptum DSM 753] gi|156866805|gb|EDO60177.1| hypothetical protein CLOLEP_02995 [Clostridium leptum DSM 753] Length = 251 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I Y+G Y GWQ Q+N S+Q + A+ V G+ V G RTDSGVHA + Sbjct: 4 RNLLLTIAYDGRAYHGWQIQENALSVQEVFQGALRQVIGDDFDVKGCSRTDSGVHANQYC 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L ALN +L +++ V FHAR+S + Y Y I Sbjct: 64 ISLKTGHRIPCERLVAALNRFL--PMDMAVKGCRSVSLDFHARYSCKGKEYQYLIWNDPV 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSF 180 GRA+ LD + + AAQ VG+HDFT+F ++ H + + R + V+ Sbjct: 122 RNPFLDGRAFHYWYPLDTDMLNQAAQAFVGKHDFTSFCTLDHRERDNMERMVKCCSVSRE 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ RV A FL+ +R VG+L + GK + L+A+DR + GP A GLY Sbjct: 182 GSLVTFRVEADGFLYNMVRIMVGTLLRIAQGKIPEDGIPAILEAKDRSKAGPTARACGLY 241 Query: 241 FDSVEYS 247 + V Y Sbjct: 242 LNRVFYE 248 >gi|229591618|ref|YP_002873737.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens SBW25] gi|229363484|emb|CAY50706.1| pseudouridylate synthase I [Pseudomonas fluorescens SBW25] Length = 284 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++EKA+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERSMKAWVMGANINL--PHDVSVSWAKVMPAHFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQHLVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 136 RPAHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +FLH +R+ G L +G G+ ++ L+++ R+ G A P GLY Sbjct: 196 KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVAWAKEVLESRVRRTGGVTAHPFGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VDVEY 260 >gi|119471543|ref|ZP_01613957.1| tRNA pseudouridine synthase A [Alteromonadales bacterium TW-7] gi|119445486|gb|EAW26772.1| tRNA pseudouridine synthase A [Alteromonadales bacterium TW-7] Length = 264 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +EKA+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVEKALSSICNHPVEIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +N L I+I V + FHARFSA R Y Y I Sbjct: 61 VHFETNASREMVAFTMGMNTLL--PKDIAIRFAQPVVEDFHARFSATARRYRYVIYNYPY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M+ A QHL+G HDFT+FR++HCQA++ RTI H V G Sbjct: 119 RGAVMNEGVTHFHHKLDEKVMQEACQHLIGEHDFTSFRALHCQANTAKRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 DYVVIDIKANAFLHHMVRNITGCLMDIGLHKHQPVWLKELLDLKERAKASATAKAAGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|125718790|ref|YP_001035923.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK36] gi|166229844|sp|A3CQB8|TRUA_STRSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125498707|gb|ABN45373.1| tRNA pseudouridine synthase A, putative [Streptococcus sanguinis SK36] Length = 249 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGRPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEDRDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRF 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|51596937|ref|YP_071128.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 32953] gi|186896018|ref|YP_001873130.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis PB1/+] gi|51590219|emb|CAH21856.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 32953] gi|186699044|gb|ACC89673.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis PB1/+] Length = 299 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 37 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQVV 96 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +N++L I++ + VD FHARFSA R Y Y I + + Sbjct: 97 HFVTSAVRKDAAWTMGVNSHL--PADIAVRWVKTVDNDFHARFSATARRYRYIIFSHRYR 154 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 155 PAILAQGVTHCYMPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHGA 214 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 215 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLYLV 274 Query: 243 SVEYS 247 SV+Y Sbjct: 275 SVDYP 279 >gi|94311405|ref|YP_584615.1| tRNA pseudouridine synthase A [Cupriavidus metallidurans CH34] gi|93355257|gb|ABF09346.1| pseudouridylate synthase I [Cupriavidus metallidurans CH34] Length = 278 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 137/249 (55%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+GS Y GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL QV Sbjct: 5 RIAIGLHYDGSAYSGWQSQPHRNTVQDHLEDAIERFAGVRLLTTVAGRTDAGVHALGQVI 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H D + + +NA+L +I++ VD+ FHARF A R Y Y + T Sbjct: 65 HLDTELDRDRFSWVRGVNAFL--PPSIALQWAEPVDENFHARFLAYERMYYYALYTGPHR 122 Query: 123 LALEKGRAWL----IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + GRA + LD E MR A+ L+G HDF+ FR+ CQA SP++T+ + Sbjct: 123 APMIHGRAGYLMLPHGQRLDTEAMRRASACLLGEHDFSAFRAAECQAKSPVKTMYDVTIE 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + GN + +R A +FLH +R+ +G L VG G++ + + + L+ ++R++ P P+G Sbjct: 183 ADGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPAEWMAEVLEGRNRQKAAPTFMPDG 242 Query: 239 LYFDSVEYS 247 LY V+Y Sbjct: 243 LYLVDVKYP 251 >gi|160879036|ref|YP_001558004.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160427702|gb|ABX41265.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 248 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M +IIEY+GS Y GWQ+Q +IQ +E + + E V V GA RT++GVHA Sbjct: 1 MRNIQLIIEYDGSRYDGWQKQAGNQKSITIQDKLEDVLNKMENETVTVIGAARTEAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 +QVA F + + + LN +L I++L V ++FHA F+A Y Y+I Sbjct: 61 YKQVASFMTNSKLKVYEIKQYLNRFL--PRDIAVLEALEVPERFHASFNAGSFEYEYKIS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P E+ + K D M+ AA++LVG+HDF F S R I ++ Sbjct: 119 IGEVPSVFERKYNYYCFKRPDIAKMKEAAKYLVGKHDFKAFSDNKRMKKSTEREIYSLEI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I I V F +R VG+L VG K D+++ L+++DR + G + Sbjct: 179 YGDEKEIVITVHGDDFWPHMVRIMVGTLLDVGLSKIEPMDIKRILESKDRDKAGETIEAK 238 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 239 GLFLTEVHY 247 >gi|218245114|ref|YP_002370485.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8801] gi|226708647|sp|B7K222|TRUA_CYAP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218165592|gb|ACK64329.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8801] Length = 293 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 116/247 (46%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y GS + GWQ Q N ++Q IE AI V GE V +HGAGRTD+GVHA QV Sbjct: 10 QRVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTDAGVHAAAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+V LNA L + I I + V +HARFSA R Y Y T Q Sbjct: 70 AHFDMVSPIPASRWVDILNARL--PEDILIRGSAQVPLTWHARFSAQWRRYRYTFYTEQR 127 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P K +W LD M+ A L+GRH F + + + Sbjct: 128 PNLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEVQSTHCHRQ 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R VG L VG GK + + + + Q R+ AP +GL Sbjct: 188 GPFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLC 247 Query: 241 FDSVEYS 247 V Y Sbjct: 248 LLRVGYE 254 >gi|291544350|emb|CBL17459.1| pseudouridylate synthase I [Ruminococcus sp. 18P13] Length = 273 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++ Y G+ Y G+QRQ N ++Q ++E+A+ V ++G RTD+GVHA + Sbjct: 1 MRTLKCMMAYRGTKYHGFQRQDNAHTVQEAVEQALGSVLNHPATIYGCSRTDTGVHARQY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F R P+ L + +N L D IS+L+ FHAR++ + YLY I + Sbjct: 61 CFSFQTERPIQPLNLVRGVNGRL--PDDISLLSAEDAALSFHARYACRGKEYLYLIHNSE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + A + +D ++ A +G HDF +F S Q +S +RTI F V Sbjct: 119 SPNPFLRDLACHHRRPIDPALLQACADRFIGTHDFKSFCSAQAQRTSTVRTIYDFSVEMS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + V FL+ IR VG++ V DGK +DL+ L A+DR+ G A GLY Sbjct: 179 GDSIILLVKGDGFLYNMIRILVGTMLQVNDGKLKLSDLDGILAARDRRCAGKTAMACGLY 238 Query: 241 FDSVEYS 247 + V Y Sbjct: 239 LNRVFYD 245 >gi|282882119|ref|ZP_06290760.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B] gi|281298149|gb|EFA90604.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B] Length = 243 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + Y+G+ Y G+Q Q +I+G + KAI + ++ AGRTD GVHAL Q Sbjct: 1 MNILIKVTYDGTNYHGYQVQNKLKTIEGELSKAINNTLKKETKIYSAGRTDRGVHALGQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L + +N +L D IS+++ V FHARFSA + Y Y + + Sbjct: 61 VNFYTDTTIDLGNLPRVINFHL--PDDISVISAKEVPFDFHARFSAKEKIYRYVVYNNKY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ RA+ P SLD M + ++L+G+ DF +F IRTI V Sbjct: 119 RNAIYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I +SFL IR +G+ +G GK +++ L+ Q+RK GP AP GLY Sbjct: 179 KFIYFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYL 238 Query: 242 DSVEY 246 ++ Y Sbjct: 239 MNILY 243 >gi|330718940|ref|ZP_08313540.1| tRNA pseudouridine synthase A [Leuconostoc fallax KCTC 3537] Length = 250 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 126/252 (50%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 M RY I+ Y+GSG+FG+Q Q + ++QG + K + + + V GA RTD+GVHA Sbjct: 1 MPRYKAIVSYDGSGFFGFQVQNDVRTVQGELNKVVNQMAKNPATPIRVIGASRTDTGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV +FDL + K LN L I I + IV+ FHARF++ + Y YR+ Sbjct: 61 LGQVINFDLPFNIPAASVRKGLNTLL--PRDIMIREVEIVNDDFHARFNSHHKRYFYRLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T+ ++ A LD + + A L+G HDF +F + Q + IR I D+ Sbjct: 119 TQDFVDPFKRKYAGHFHWPLDIQRIEKALPDLLGEHDFASFAASGNQTQTTIRRITRADI 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 I +FL+ QIR VG L +G GK D+++ ++ +DR + A Sbjct: 179 INKPDEQEIVFIFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIQRLIEVKDRSQARFTAA 238 Query: 236 PEGLYFDSVEYS 247 GLY D + YS Sbjct: 239 AAGLYLDEISYS 250 >gi|269213866|ref|ZP_05983015.2| tRNA pseudouridine synthase A [Neisseria cinerea ATCC 14685] gi|269145225|gb|EEZ71643.1| tRNA pseudouridine synthase A [Neisseria cinerea ATCC 14685] Length = 277 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 19 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALENALAQIAGEAVSTIVAGRTDTGVHATAQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA L + I++L+ +FHARF A R Y Y + + Sbjct: 79 VVHFDTAAVRPAQAWIRGVNANL--PEGIAVLHAQQAAPEFHARFDAYGRHYRYLLESSP 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K R LD E MR AA LVG DF++FR+ CQA SP++TI ++ Sbjct: 137 VRSPLLKHRVGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAECQAKSPVKTIYSAEIAYG 196 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 197 RGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVDGFAALIRERSRLKAPPTFMPDGLY 256 Query: 241 FDSVEYS 247 ++Y Sbjct: 257 LTGIDYP 263 >gi|257058139|ref|YP_003136027.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8802] gi|256588305|gb|ACU99191.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8802] Length = 293 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 116/247 (46%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y GS + GWQ Q N ++Q IE AI V GE V +HGAGRTD+GVHA QV Sbjct: 10 QRVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTDAGVHAAAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+V LNA L + I I + V +HARFSA R Y Y T Q Sbjct: 70 AHFDMVSPIPASRWVDILNARL--PEDILIRGSAQVPLTWHARFSAQWRRYRYTFYTEQR 127 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P K +W LD M+ A L+GRH F + + + Sbjct: 128 PNLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEVQSTHCHRQ 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R VG L VG GK + + + + Q R+ AP +GL Sbjct: 188 GPFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLC 247 Query: 241 FDSVEYS 247 V Y Sbjct: 248 LLRVGYE 254 >gi|291460751|ref|ZP_06600141.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] gi|291416710|gb|EFE90429.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] Length = 266 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 M R + I Y+G+ Y GWQ Q+ S+I+G + +A+ L+ GE + + GA RTD+GVHA + Sbjct: 1 MRRIRLDIAYDGTNYHGWQYQEGQSTIEGELRRALSELLPGEEIGLTGASRTDAGVHARQ 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A FD ALN L + I IL + FH RFS ++ Y YRI Sbjct: 61 NTACFDTKSRIPGANFSMALNCRL--PEDIRILRSMEAGEDFHPRFSPHKKVYEYRIGRS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA----SSPIRTIDHF 175 + P L++ + L MR+AA+ LVG HDF +F + Q + +RT+ Sbjct: 119 RIPDPLKRLYCFPFSFPLSLSEMRLAAEELVGEHDFRSFANPDSQVLMHGGAAVRTLYEL 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G + + FL+ IR G+L +G G+ + ++ + L A+DR+ G AP Sbjct: 179 SLREEGEELILHFEGSGFLYHMIRILTGTLLEIGSGRRRAAEIPEILAARDRRRAGFTAP 238 Query: 236 PEGLYFDSVEYS 247 +GL ++ Y Sbjct: 239 AKGLCLLALCYE 250 >gi|307294617|ref|ZP_07574459.1| tRNA pseudouridine synthase A [Sphingobium chlorophenolicum L-1] gi|306879091|gb|EFN10309.1| tRNA pseudouridine synthase A [Sphingobium chlorophenolicum L-1] Length = 248 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 125/247 (50%), Positives = 161/247 (65%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q +IE AIF V+GE V+H AGRTD+GVH + Sbjct: 1 MTRFAFTVEFDGRPFMGWQRQAHGPSVQQAIEDAIFAVSGERAVIHAAGRTDAGVHGIAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ ++ P L +ALNA L+ I+IL V +HARFS + RSY+YRI R+ Sbjct: 61 RAHADIAKDMAPFRLMEALNARLR-PHPIAILACEAVPDDWHARFSCVGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E G W + + LD + M+ AAQ LVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTWENGLVWRVIQPLDTDAMQEAAQLLVGRHDFTTFRSAHCQAESPVKTLDRLDVERS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L LVG G+W+ DLE A A+DR G APP+GLY Sbjct: 180 GDRLAIYAEARSFLHHQVRSMVGCLALVGMGRWSIGDLEAARDARDRAALGLNAPPDGLY 239 Query: 241 FDSVEYS 247 F Y Sbjct: 240 FVRARYP 246 >gi|307544826|ref|YP_003897305.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581] gi|307216850|emb|CBV42120.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581] Length = 292 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 2/242 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M +EY+GS Y GWQR K+ +S+Q S+E+A+ V G V VH +GRTDSGVHA RQ+ HFD Sbjct: 1 MAVEYDGSQYCGWQRLKHAASVQASLEQALSRVAGAPVRVHASGRTDSGVHATRQIVHFD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 NA L I++ + V + FHARF A+ R Y Y ++ + + L Sbjct: 61 PPAPRSEKAWVFGANANL--PRDIAVRWVMPVGEDFHARFKALARRYRYVLLNQPSRPVL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E+ LD E M AAQ LVG HDF++FR+ CQ+ +P R + +V+ G L+ Sbjct: 119 ERANVTWCRDPLDAEAMHEAAQVLVGEHDFSSFRAAGCQSKTPWRHLHFIEVHRHGPLVV 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + V +FLH IR+ G+L VG G+ + L + L +DR + AP GL+F Sbjct: 179 VDVQGNAFLHHMIRNIAGALVTVGRGEQGADYLARLLALRDRTQGDVTAPACGLHFVDSL 238 Query: 246 YS 247 Y Sbjct: 239 YD 240 >gi|299138466|ref|ZP_07031645.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX8] gi|298599712|gb|EFI55871.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX8] Length = 271 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 95/271 (35%), Positives = 135/271 (49%), Gaps = 26/271 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + GWQ Q ++QGS+ A+ VTGE V+ G+GRTDSGVHAL Q Sbjct: 1 MNHWKLTLSYDGTLFHGWQVQPELPTVQGSLALALKYVTGESVLPQGSGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 V F L P L +ALN L +I IL +VD+ FHAR SA R++Y YRI R Sbjct: 61 VTSFALETSIPPANLQRALNRAL--PPSIRILTAELVDESFHARHSARRKTYEYRIFERR 118 Query: 120 -------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-------- 164 + AW L E M+ A+++L G HDFT+F + + Sbjct: 119 TAASPSERICSPFLAPYAWDCRWQLAIEPMQEASKYLCGTHDFTSFAASDPERGLREEES 178 Query: 165 --------ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +P++T+ L+ RV FLH +R+ VG+L VG G Sbjct: 179 DDANGKAHGPNPVKTLLQAGWAHEDGLLVYRVTGSGFLHHMVRNIVGTLADVGRGSLAVD 238 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ + L A++R GP AP GL+ SVEY Sbjct: 239 EIPRILAARNRTAAGPTAPACGLFLHSVEYD 269 >gi|209965580|ref|YP_002298495.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW] gi|238057735|sp|B6IPI0|TRUA_RHOCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209959046|gb|ACI99682.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW] Length = 245 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQ NG S+Q ++E+AI+ T E V V AGRTD+GVHAL Sbjct: 1 MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRTDAGVHALAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL RE + ALN +LK +++L + V FHARFS + R+YLYRI+ R+ Sbjct: 61 VASVDLAREATADKVQAALNFHLK-PHPVAVLRVEPVAPDFHARFSCLGRAYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE GR W + LD E M AAQ LVG+HDF++FR+ CQA SP++T+ V Sbjct: 120 APAALEAGRVWHVQGGLDAEAMHEAAQRLVGQHDFSSFRASLCQAKSPVKTLSDLSVARV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+R+ VG+LKLVG+G+WT+ D+ +AL A++R GP AP GLY Sbjct: 180 GEEVRIVARARSFLHHQVRNMVGTLKLVGEGRWTADDVSRALAARNRSAAGPTAPAAGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTEAWY 245 >gi|319639209|ref|ZP_07993960.1| tRNA pseudouridine synthase A [Neisseria mucosa C102] gi|317399393|gb|EFV80063.1| tRNA pseudouridine synthase A [Neisseria mucosa C102] Length = 281 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q ++Q ++E+A+ + GE + AGRTD+GVHA Q Sbjct: 13 QRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALTSIAGERINTIVAGRTDTGVHATAQ 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L D +++L V F+ARF A R Y Y + + Sbjct: 73 VVHFDTSVSRPEQAWVRGVNAHL--PDGVAVLLAQKVAPHFNARFDAYGRHYRYLLESSP 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 131 VRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYSTKISGT 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + +FLH +R+ +G+L VG G+ + + E A+ R P +GLY Sbjct: 191 SRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLMAPPTFMSDGLY 250 Query: 241 FDSVEYS 247 V+Y Sbjct: 251 LTGVDYP 257 >gi|171463727|ref|YP_001797840.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226708657|sp|B1XV49|TRUA_POLNS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171193265|gb|ACB44226.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 276 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 90/256 (35%), Positives = 134/256 (52%), Gaps = 12/256 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE------IVVVHGAGRTDSGV 55 +R + ++Y+GS Y GWQ Q N +++Q +EKAI GE + AGRTD+GV Sbjct: 1 MRIALGLQYDGSPYSGWQTQVNHNTVQNELEKAISAFVGEQACVVKPINTITAGRTDTGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HAL QV HFD E + +N++L S I I V ++F ARFSA R Y+Y Sbjct: 61 HALGQVVHFDTNVEREDFSWVRGVNSFLSSS--IVINWAKPVSEEFCARFSAYEREYIYA 118 Query: 116 IITRQAPLALEKGRAWLIPKS----LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 + + RA + D E M+ +A+ L+G HDF++FRS CQ+ +PI+T Sbjct: 119 LHAGPCRSPMAHSRAGYLMLPPSQWFDIEAMQKSAECLIGEHDFSSFRSSECQSKTPIKT 178 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I ++ S + R+ +FLH IR+ VG +G GK TS + + L A++R+ Sbjct: 179 IYLIEIISKQPWLYFRIRGNAFLHHMIRNLVGCFLQIGQGKQTSQWMAEVLAAKNRQIAA 238 Query: 232 PLAPPEGLYFDSVEYS 247 P +GLY + Y Sbjct: 239 PTFMADGLYLAKITYP 254 >gi|77360999|ref|YP_340574.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis TAC125] gi|123587603|sp|Q3IF40|TRUA_PSEHT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76875910|emb|CAI87131.1| tRNA pseudouridylate synthase I [Pseudoalteromonas haloplanktis TAC125] Length = 264 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +E A+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVETALSRICNHPVAIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +N L I+I V FHARFSA R Y Y I Sbjct: 61 VHFDTDAPRDMVAFTLGMNTLL--PKDIAIRFAQPVADDFHARFSATARRYRYVIYNNPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD M+ A Q+L+G++DFT+FR+IHCQA++ IRTI H V G Sbjct: 119 RGAVLNEGVTHFHHTLDETKMQEACQYLIGKYDFTSFRAIHCQANTAIRTIQHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 SYVIIDIKANAFLHHMVRNITGCLMDIGLHKQQPVWLKELLDLKERAKASATAKAAGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|325695572|gb|EGD37472.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK150] Length = 249 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|332366230|gb|EGJ43985.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK355] Length = 249 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L+ +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILEEKDRYLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|325124398|gb|ADY83921.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus PHEA-2] Length = 265 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 132/248 (53%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPETGWLRGANSQL--PKDISIQWIKLMDENFHARFKATARRYRYIIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF YS Sbjct: 239 YFIQCNYS 246 >gi|300312591|ref|YP_003776683.1| tRNA pseudouridine synthase [Herbaspirillum seropedicae SmR1] gi|300075376|gb|ADJ64775.1| tRNA pseudouridine synthase protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 91/276 (32%), Positives = 135/276 (48%), Gaps = 32/276 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y+G+ + GWQ Q + ++Q +E A+ + + + AGRTDSGVHAL Q+ Sbjct: 12 RRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALQRFSTQPIATTCAGRTDSGVHALEQI 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDK---------------------- 99 HFD + NA+L TI++ + Sbjct: 72 VHFDTPIARDSFSWVRGTNAFL--PPTIAVRWACELPYVDDAAIASAASQAAELHGADRA 129 Query: 100 --------QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 FHARFSAI R+Y Y + L G+A + LD + M AAQHL+G Sbjct: 130 GADSLSQFGFHARFSAIARTYHYVLYNHAVRTPLLAGKAGWTFRPLDADRMHRAAQHLIG 189 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 HDFT+FR++ CQA SP+R ++ V G++I + A +FLH +R+ VGSL +VG G Sbjct: 190 EHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRNIVGSLVVVGSG 249 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 K + + L +DR P P+GLY V+Y Sbjct: 250 KQEPDWMGQVLALRDRSRAAPTFMPDGLYLARVDYP 285 >gi|315641606|ref|ZP_07896674.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] gi|315482647|gb|EFU73175.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] Length = 248 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 127/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M +IIEY+G+ Y GWQR + +IQG +EK + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLIIEYDGTRYQGWQRLGDSDKTIQGKLEKIVSQLTGETIELIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + YL I + ++ V ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNCNKSLEEMHHFFLTYL--PKDIVVTSIDEVPERFHARYNAVSKQYSYYVRHA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A ++ + + + LD E M A L G HDF F ++ S +RTI+ ++ Sbjct: 119 ELPSAFDRNYHFYVAEPLDWEAMTEACLRLTGAHDFLGFSALKKSKKSTVRTIESIEMEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +I FL+ +R +G++ VG G+ T ++ QA+ R+ G P +GL Sbjct: 179 EEAMIRFVFRGDGFLYKMVRIMMGTILAVGKGEMTVNQIDDIFQAKIRQAAGETVPAQGL 238 Query: 240 YFDSVEYS 247 + D V Y Sbjct: 239 FLDGVFYE 246 >gi|22125494|ref|NP_668917.1| tRNA pseudouridine synthase A [Yersinia pestis KIM 10] gi|45442187|ref|NP_993726.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Microtus str. 91001] gi|108808073|ref|YP_651989.1| tRNA pseudouridine synthase A [Yersinia pestis Antiqua] gi|108812343|ref|YP_648110.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|145599273|ref|YP_001163349.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides F] gi|162419146|ref|YP_001604969.1| tRNA pseudouridine synthase A [Yersinia pestis Angola] gi|165925379|ref|ZP_02221211.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. F1991016] gi|165937079|ref|ZP_02225644.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. IP275] gi|166008316|ref|ZP_02229214.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. E1979001] gi|166214223|ref|ZP_02240258.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. B42003004] gi|167398935|ref|ZP_02304459.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421195|ref|ZP_02312948.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424547|ref|ZP_02316300.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469280|ref|ZP_02333984.1| tRNA pseudouridine synthase A [Yersinia pestis FV-1] gi|170023770|ref|YP_001720275.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis YPIII] gi|229838336|ref|ZP_04458495.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895366|ref|ZP_04510539.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides A] gi|229898902|ref|ZP_04514047.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. India 195] gi|229902698|ref|ZP_04517815.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|270490127|ref|ZP_06207201.1| tRNA pseudouridine synthase A [Yersinia pestis KIM D27] gi|294504649|ref|YP_003568711.1| tRNA pseudouridine synthase A [Yersinia pestis Z176003] gi|21958390|gb|AAM85168.1|AE013763_2 pseudouridylate synthase I [Yersinia pestis KIM 10] gi|45437051|gb|AAS62603.1| pseudouridylate synthase I [Yersinia pestis biovar Microtus str. 91001] gi|108775991|gb|ABG18510.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|108779986|gb|ABG14044.1| tRNA pseudouridine synthase A [Yersinia pestis Antiqua] gi|145210969|gb|ABP40376.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides F] gi|162351961|gb|ABX85909.1| tRNA pseudouridine synthase A [Yersinia pestis Angola] gi|165914942|gb|EDR33554.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. IP275] gi|165922986|gb|EDR40137.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. F1991016] gi|165992698|gb|EDR44999.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. E1979001] gi|166204579|gb|EDR49059.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. B42003004] gi|166960684|gb|EDR56705.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051439|gb|EDR62847.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056429|gb|EDR66198.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750304|gb|ACA67822.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis YPIII] gi|229680145|gb|EEO76244.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|229688450|gb|EEO80521.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. India 195] gi|229694702|gb|EEO84749.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701674|gb|EEO89700.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides A] gi|262362710|gb|ACY59431.1| tRNA pseudouridine synthase A [Yersinia pestis D106004] gi|270338631|gb|EFA49408.1| tRNA pseudouridine synthase A [Yersinia pestis KIM D27] gi|294355108|gb|ADE65449.1| tRNA pseudouridine synthase A [Yersinia pestis Z176003] gi|320014566|gb|ADV98137.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 293 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 31 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQVV 90 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +N++L I++ + VD FHARFSA R Y Y I + + Sbjct: 91 HFVTSAVRKDAAWTMGVNSHL--PADIAVRWVKTVDNDFHARFSATARRYRYIIFSHRYR 148 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 149 PAILAQGVTHCYMPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHGA 208 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 209 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLYLV 268 Query: 243 SVEYS 247 SV+Y Sbjct: 269 SVDYP 273 >gi|329768896|ref|ZP_08260324.1| tRNA pseudouridine synthase A [Gemella sanguinis M325] gi|328837259|gb|EGF86896.1| tRNA pseudouridine synthase A [Gemella sanguinis M325] Length = 262 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +I Y+GS Y G+Q Q N +++Q IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRVVLICRYDGSRYHGFQIQPNNNTVQEEIEKSLRKIHKKNVRIYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KA+NA I I I++ +V+ +FH R+++I+++Y Y++ + Sbjct: 61 LHFDTDLNIPTDGWVKAINAM--IPKDIRIVSAKVVNDEFHVRYNSIKKTYSYKLYLGRE 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 + + + + A ++ +G HDF++F S + +RTI F ++ Sbjct: 119 IDPFLINYVGQHKFNFNFDKAKEALKYFIGEHDFSSFCSKNTSVEDKVRTIYSFKMDRDN 178 Query: 181 --GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N+I + FL+ +R +G+++ V GK+ +++ L ++R GP A G Sbjct: 179 QNDNIINFEITGNGFLYNMVRIIIGTVQDVAAGKYEPEYIQEILAKKERSFSGPKADASG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLKEVLYD 247 >gi|262366637|gb|ACY63194.1| tRNA pseudouridine synthase A [Yersinia pestis D182038] Length = 293 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 31 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQVV 90 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +N++L I++ + VD FHARFSA R Y Y I + + Sbjct: 91 HFVTSAVRKDAAWTMGVNSHL--PADIAVRWVKTVDNDFHARFSATARRYRYIIFSHRYR 148 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 149 PAILAQGVTHCYMPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHGA 208 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 209 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLYLV 268 Query: 243 SVEYS 247 SV+Y Sbjct: 269 SVDYP 273 >gi|325107879|ref|YP_004268947.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305] gi|324968147|gb|ADY58925.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305] Length = 278 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 131/265 (49%), Gaps = 21/265 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+GSGY+GWQ Q + +IQ +E+AI +TG V GAGRTD+GVHA+ QV Sbjct: 4 RNIKLTLSYDGSGYYGWQVQPDRPTIQEHLERAIGNITGTPSRVAGAGRTDTGVHAIGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F AL + L D I I FHA +++ + Y Y ++ + Sbjct: 64 ACFRTESNIPAERFRPALQSQL--PDDIVIWKSEEAADDFHAGYASRWKQYRYLVLNEEI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-- 179 P + A I LD + M AA LVG+HDF +F S ++ +RT+ H VN Sbjct: 122 PRPQMRRYATRIGTRLDLDAMNEAASALVGKHDFRSFESQFPNKATSVRTVLHCRVNEAE 181 Query: 180 -----------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 G + + + A FL+ +R+ +G+L +G G W ++ ++ L Sbjct: 182 TCPLWQPGLGGQRFGQAVGRCVYLDIAADGFLYNMVRAIMGTLLKIGIGSWPASAGKEVL 241 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 +A DR+ GP APPEGLY VEY Sbjct: 242 EAMDRRVAGPTAPPEGLYLMHVEYD 266 >gi|313680524|ref|YP_004058263.1| tRNA pseudouridine synthase a [Oceanithermus profundus DSM 14977] gi|313153239|gb|ADR37090.1| tRNA pseudouridine synthase A [Oceanithermus profundus DSM 14977] Length = 251 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 136/248 (54%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R +++EY+G+ + G+Q Q G ++QG +E A+ + G V AGRTDSGVHAL Sbjct: 1 MRRLKLVLEYDGTDFAGFQLQARGERTVQGVLEAALARIPGARPKVTAAGRTDSGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H+D + +ALNA L + +L V +HAR+SA R YLYR++ R Sbjct: 61 MPVHYDTEDTVPVERVPQALNALL--PPDVRVLEAEEVPPDWHARYSARWRRYLYRVLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P AL++ R W +P+ D + AA+ LVG HDF F + + + +R + V + Sbjct: 119 RQPTALDRHRVWWVPQPFDFPAIAAAARTLVGEHDFGAF--ANREKRATVRRLYQAHVEA 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + V F+ Q+R+ VG+L VG G+ D+ + L+ +R E G APP+GL Sbjct: 177 VGGELHLHFVGSGFVRGQVRAMVGTLVEVGLGRRPPEDVARLLENPERSEGGATAPPQGL 236 Query: 240 YFDSVEYS 247 YF + YS Sbjct: 237 YFVAAGYS 244 >gi|313892355|ref|ZP_07825947.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|329121372|ref|ZP_08249998.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] gi|313119214|gb|EFR42414.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|327469781|gb|EGF15247.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] Length = 266 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+G+ Y G+QRQ+NG ++Q ++EK + +TG ++ RTD+GVHA Q Sbjct: 1 MRNIWITVSYDGTEYAGFQRQENGFTVQEALEKVLKKLTGVHTTIYFVARTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F A+N+ L I +L + + F R + ++Y Y + + Sbjct: 61 ECTFYTESSIPSERFKNAMNSLL--PCDIRVLKSKEMYEDFSVRKTNYGKTYAYILSEDK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + W + LD + M+ A+ L G+HDFT+FR + + P+R I+ + Sbjct: 119 DINPFLRKYVWYTGRKLDLQKMKEVAKVLEGKHDFTSFRGNNSVPADPVRFINEVRIIRK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI + V FL+ +R+ VG+ G G T +++ L+A+DRK+ G APP+GL Sbjct: 179 NSLIFVYVTGEGFLYHMVRNMVGAFVDAGRGIMTPERIKEILKAKDRKKLGVTAPPQGLA 238 Query: 241 FDSVEYS 247 V + Sbjct: 239 LLKVYFE 245 >gi|146320154|ref|YP_001199865.1| tRNA pseudouridine synthase A [Streptococcus suis 98HAH33] gi|253751190|ref|YP_003024331.1| tRNA pseudouridine synthase A [Streptococcus suis SC84] gi|253753091|ref|YP_003026231.1| tRNA pseudouridine synthase A [Streptococcus suis P1/7] gi|253754913|ref|YP_003028053.1| tRNA pseudouridine synthase A [Streptococcus suis BM407] gi|166229843|sp|A4VZC6|TRUA_STRS2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145690960|gb|ABP91465.1| Pseudouridylate synthase [Streptococcus suis 98HAH33] gi|251815479|emb|CAZ51057.1| tRNA pseudouridine synthase A [Streptococcus suis SC84] gi|251817377|emb|CAZ55113.1| tRNA pseudouridine synthase A [Streptococcus suis BM407] gi|251819336|emb|CAR44702.1| tRNA pseudouridine synthase A [Streptococcus suis P1/7] gi|319757459|gb|ADV69401.1| tRNA pseudouridine synthase A [Streptococcus suis JS14] Length = 249 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|257868757|ref|ZP_05648410.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] gi|257802921|gb|EEV31743.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] Length = 246 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQ IE + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYLGWQRLGDSDRTIQEKIESILTQMTNEKIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + P + + LN YL I I ++ ++FHAR++A + Y Y + Sbjct: 61 QVANFKTASDLSPEKMLQFLNRYL--PQDIVIKEVAEASERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P E+ R++ P+ LD + M+ A + +G HDF F ++ S RTI+ + Sbjct: 119 PIPTVFERHRSFHCPQELDWDKMQAACEKFIGTHDFIGFSALKKTKKSTTRTIEELSLTR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++ R FL+ +R G++ +G G + +++ Q RK G P +GL Sbjct: 179 EGDMLRFRFKGDGFLYKMVRIITGTILEIGAGTMDISAIDEIFTNQVRKAAGETVPSQGL 238 Query: 240 YFDSVEY 246 + D+V Y Sbjct: 239 FLDAVYY 245 >gi|254480499|ref|ZP_05093746.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2148] gi|214039082|gb|EEB79742.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2148] Length = 277 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R IEYNG+ Y GWQ Q + + ++Q +E A+ V + VH AGRTD+GVH Q Sbjct: 11 RIACRIEYNGARYNGWQSQPHLNVLTVQQELESALSSVADHPLRVHCAGRTDTGVHGHCQ 70 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD P L A ++ + + ++V + FHARF A+ R Y Y I Sbjct: 71 IVHFDAPAARAPKAWV--LGANASMAKDVRVHWATVVPESFHARFCAVARRYRYVIANTL 128 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ G+ LD M AAQ L+G DF+ FR+ CQ++SP+R + V Sbjct: 129 VRPAVLVGQVSWYRYPLDAAIMDKAAQSLLGEQDFSAFRAAACQSNSPMRNVHSVAVRRI 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ + + A +FLH +R+ VGSL VG G+ + + L A+DR + A P GLY Sbjct: 189 GDLVVVDIQANAFLHHMVRNIVGSLLAVGSGRKPEAWIGQLLAARDRTQAADTAAPHGLY 248 Query: 241 FDSVEYS 247 V Y Sbjct: 249 LADVLYP 255 >gi|226322792|ref|ZP_03798310.1| hypothetical protein COPCOM_00564 [Coprococcus comes ATCC 27758] gi|225208773|gb|EEG91127.1| hypothetical protein COPCOM_00564 [Coprococcus comes ATCC 27758] Length = 259 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ Y GWQRQ+N ++QG +E+ I + G+ VV G+GRTDSGVHAL Sbjct: 1 MNTYRITVAYDGTAYRGWQRQENTELTVQGILERRISEIAGKKTVVSGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q L +E K LNA L + I +L++S + FHAR SA+ + Y Y+I R Sbjct: 61 QECSLYLEQEIDMDSFKKQLNALL--PEDIRVLDISREKRDFHARKSAVGKCYEYQIDLR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P +D M AA++L+G HDF+ F + + +RTI + Sbjct: 119 DKMEVFHRKYRFHFPHPVDIAAMEQAAEYLMGTHDFSAFTDLK-EDKDTVRTIYAVGIVY 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + + FL+ +R G+L VG GK + ++ + L+A+DRK+ G AP +GL Sbjct: 178 EKDTLTLSWIGDGFLYHMVRILTGTLLDVGIGKIKAEEIPEILKAKDRKKSGFPAPAKGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLGRVFY 244 >gi|323350454|ref|ZP_08086117.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66] gi|322123391|gb|EFX95069.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66] Length = 249 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFLGNGFLYKQIRNMVGTLLKIGNKRMPVEQVQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|258513673|ref|YP_003189895.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM 771] gi|257777378|gb|ACV61272.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM 771] Length = 250 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 126/252 (50%), Gaps = 8/252 (3%) Query: 1 MIR---YCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R +I+ Y+G+ Y G+Q QK +IQG +++ + + E + V AGRTDSGV Sbjct: 1 MNRGRNIKVILAYDGTNYHGFQIQKGKRLPTIQGVLQRELSHLAKETITVTTAGRTDSGV 60 Query: 56 HALRQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 HA QV +F +P + ALN+ L I L+ VD FHAR+SA+ ++Y Y Sbjct: 61 HARGQVFNFFTGNWQIPVDRVIYALNSVL--PPDIRALSAEEVDLGFHARYSALAKTYCY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I Q + ++ LD ++MR A H+ G HDF +F + S IRTI Sbjct: 119 YISRDQIVSPFTRLYSYQYNYPLDLDDMRQAVLHITGEHDFKSFMASGSLVKSTIRTIYQ 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 D+ ++ FL+ +R G+L VG GK +++E L+ DRK G Sbjct: 179 IDLIEKDKMLIFTFRGNGFLYHMVRIITGTLLQVGTGKIHYSEIETILKKCDRKSAGATV 238 Query: 235 PPEGLYFDSVEY 246 P GL+ + VEY Sbjct: 239 PALGLFLERVEY 250 >gi|146317967|ref|YP_001197679.1| tRNA pseudouridine synthase A [Streptococcus suis 05ZYH33] gi|166229845|sp|A4VT40|TRUA_STRSY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145688773|gb|ABP89279.1| Pseudouridylate synthase [Streptococcus suis 05ZYH33] Length = 249 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDNVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|113868577|ref|YP_727066.1| tRNA pseudouridine synthase A [Ralstonia eutropha H16] gi|123032833|sp|Q0K8H3|TRUA_RALEH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113527353|emb|CAJ93698.1| transfer RNA-pseudouridine synthase I [Ralstonia eutropha H16] Length = 272 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 92/251 (36%), Positives = 137/251 (54%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIALGLHYDGAAFSGWQSQPHRNTVQDHLENAIERFAGVRLLTTVAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D E P + +NA+L +I++ VD+ FHARF A R Y Y + T Sbjct: 61 VIHLDTALEREPFSWVRGVNAFL--PPSIALQWALPVDQGFHARFLAFERMYYYALYTGP 118 Query: 121 APLALEKGRAWL----IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L GRA + LD + MR AA L+G HDF+ FR+ CQA SP++T+ Sbjct: 119 HRVPLVHGRAGYQMLPPGQRLDVDAMREAAACLLGEHDFSAFRAAECQAKSPVKTMYDVT 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + GN + +R A +FLH +R+ +G L VG G++ + L + L ++RK P P Sbjct: 179 IRDDGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPAHWLAQVLAGRERKLAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V+Y Sbjct: 239 DGLYLVGVKYP 249 >gi|317123065|ref|YP_004103068.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM 12885] gi|315593045|gb|ADU52341.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM 12885] Length = 298 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 113/244 (46%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++ Y+G+ + GWQRQ ++Q +E A+ + G V V AGRTD+GVHA QV H Sbjct: 46 LRAVLAYDGTDFAGWQRQPRQRTVQQVVEDALERLLGHPVRVTAAGRTDAGVHARAQVIH 105 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R + L AL L + + FHAR+SA R++Y Y + P Sbjct: 106 WRTPRPFPVDRLVPALRGLL--PADVVAVEAGEAPPGFHARYSARRKTYAYHVWRDPVPD 163 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L + W +P LD + M AA+ L G HDF F++ RT+ V G L Sbjct: 164 PLHRRWQWHLPLDLDVDAMVEAARRLEGTHDFAPFKAAGSPVRRTRRTLYRCAVEERGPL 223 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A FL R VG+L +G G+W + +E L R GP AP GL Sbjct: 224 LRFVLEADGFLMHMARGIVGTLVEIGRGRWQADRVEAILAEGRRDLAGPTAPAHGLVLWQ 283 Query: 244 VEYS 247 V Y Sbjct: 284 VVYD 287 >gi|326790769|ref|YP_004308590.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326541533|gb|ADZ83392.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 246 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 122/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y + I Y+GS Y G+Q+Q +IQG +E + E + + +GRTD+GVH+ Sbjct: 1 MTNYKLTIAYDGSKYNGFQKQSKHPEKTIQGRLENVLTQCFEEDIQIIASGRTDAGVHSK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F P + L+ YL I+IL LSI +FHAR++ +R+ Y Y I Sbjct: 61 GQVCNFHAEHYLEPTTVLNYLSNYL--PQDIAILELSIASPRFHARYNVLRKCYTYTIDN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A+ + LD M+ AA +L+G HDF F S+ + S R + + D+ Sbjct: 119 GLFANPFTLKYAYHLASPLDISRMQAAANYLLGTHDFKAFTSLKSKTKSTTRHLFNIDIT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G++I++ FL +R G+L VG G+ + ++ L Q R E G AP G Sbjct: 179 QEGSMIKLTYEGNGFLQHMVRILTGTLIEVGLGERSPEEMLVLLNNQIRSEAGFTAPAHG 238 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 239 LCMQRVDY 246 >gi|332359236|gb|EGJ37057.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK49] Length = 249 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 FGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERKFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|327462829|gb|EGF09151.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1057] Length = 249 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRH 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLFKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|329116632|ref|ZP_08245349.1| tRNA pseudouridine synthase A [Streptococcus parauberis NCFD 2020] gi|326907037|gb|EGE53951.1| tRNA pseudouridine synthase A [Streptococcus parauberis NCFD 2020] Length = 249 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+GSG+ G+QRQ + S+Q IEK + + G+++ +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGSGFSGFQRQPHARSVQEEIEKTLLKLYKGQVIKIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E + AL+ + D I + + V +H R+ +++Y + + Sbjct: 61 QVIHFDLPLERDIEKIRFALDT--QTPDDIDFIKVEKVADDYHCRYLKHKKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P LD M A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPLDISLMDEAIKDLVGTHDFTGFTASGTSIENKVRTISEAKLTY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ Q+R+ VG+L +G+ + + +++ L+ ++R+ GP A Sbjct: 179 DAKRNFLIFSFTGNGFLYKQVRNMVGTLLKIGNQRMPVSQVQRILEEKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|330502915|ref|YP_004379784.1| tRNA pseudouridine synthase A [Pseudomonas mendocina NK-01] gi|328917201|gb|AEB58032.1| tRNA pseudouridine synthase A [Pseudomonas mendocina NK-01] Length = 287 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 121/247 (48%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ SIQG +E A+ V G V +H AGRTD+ VH+ Q Sbjct: 19 RVALGLEYKGARYRGFQRQGGKVASIQGCLEDALSKVAGGAPVTIHCAGRTDASVHSSGQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VVHFDTTVERSLHAWVMGANMNL--PSDISVTWAKVMPAHFHARFSAMARRYRYVIYNDP 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD MR AA LVG HDF+ FR+ CQA SPI+T+ H + Sbjct: 137 IRPAHMAEEVTWNHRPLDVARMREAALALVGTHDFSAFRATRCQAKSPIKTVHHLQLIEH 196 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +FLH +R+ G L +G G+ + L+ DR G A P GLY Sbjct: 197 GRFIVLDIRANAFLHHMVRNIAGVLMTIGAGERPPEWAREVLERGDRHSGGVTAHPYGLY 256 Query: 241 FDSVEYS 247 V+Y Sbjct: 257 LVQVDYP 263 >gi|254883215|ref|ZP_05255925.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_3_47FAA] gi|254836008|gb|EET16317.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_3_47FAA] Length = 263 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 7 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR+ Sbjct: 67 AHFDYDRELDCVQITEKLNRLL--PPDIAVYAVKRVKDDAHARFDATYRTYKYYVTTRK- 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 124 -DPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 183 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 242 Query: 241 FDSVEYS 247 V Y Sbjct: 243 LVDVGYP 249 >gi|313888069|ref|ZP_07821747.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846024|gb|EFR33407.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b] Length = 244 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+Q Q N +++G + I V + AGRTD GVHA Q Sbjct: 1 MKNILIKINYDGTNFHGFQLQPNERTVEGELNLGIEKTVKHPVKIFYAGRTDRGVHAEGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F L K LN L + +S+++ V FHARF A + Y Y + + Sbjct: 61 YANFYSDTTIDIGNLPKVLNFNL--PEDVSVVDAKYVPDAFHARFDAKLKKYRYVVHRSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + RA+ P +D + MR A L+G HDF +F IR+I+ DV Sbjct: 119 YRHALLRNRAYEYPYDVDPDRMREALASLIGEHDFNSFMGRGAIVKDSIRSIERIDVIED 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + VA+SFL IR G++ +G G+ +++AL+ + RK GP AP GLY Sbjct: 179 GDFLYFDFVAKSFLKNMIRIVTGTVLEIGRGQREIEYMKEALEKKSRKAAGPTAPACGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LLDVKY 244 >gi|293610220|ref|ZP_06692521.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827452|gb|EFF85816.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 265 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 132/248 (53%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + + E +V+HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADEPIVLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPETGWLRGANSQL--PKDISIQWIKLMDENFHARFKATARRYRYIIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTYIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIHCNYP 246 >gi|88607493|ref|YP_505097.1| tRNA pseudouridine synthase A [Anaplasma phagocytophilum HZ] gi|123722826|sp|Q2GKK4|TRUA_ANAPZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88598556|gb|ABD44026.1| tRNA pseudouridine synthase A [Anaplasma phagocytophilum HZ] Length = 246 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 109/247 (44%), Positives = 156/247 (63%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY G+ + GWQRQ G S+Q SIE++I + V+V+ AGRTD+GVHA Sbjct: 1 MRYKAVVEYEGTSFIGWQRQHGVVGKSVQESIERSIKEFCQQSVIVYAAGRTDAGVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ ++ +SIL L VD++FHARFSA +R Y Y+I R Sbjct: 61 QVVHFDLKVSREDYVIKNALNHYLR-NEKVSILQLERVDEEFHARFSAKKRHYTYKISNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APL ++ R W +PK L+ ENMR AA ++VG+HDF +FR+ CQ+ S I+T+D D+ + Sbjct: 120 EAPLCIDLMRMWHVPKRLNVENMREAASYIVGKHDFASFRAKDCQSKSSIKTVDSIDIIA 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + A+SFLH Q+R VG+ G G + + + L+ +DR G AP GL Sbjct: 180 AEEEININISAQSFLHKQVRITVGTFVECGMGLYPPAHVLEILEKKDRAAAGITAPAHGL 239 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 240 YLTRVDY 246 >gi|78780010|ref|YP_398122.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9312] gi|123768929|sp|Q318K9|TRUA_PROM9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78713509|gb|ABB50686.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9312] Length = 268 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 124/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQRQKN +++Q ++E+A+F +T ++V AGRTD+GVHA Q Sbjct: 1 MKRIALLVQYDGSNYSGWQRQKNATTVQETLERALFKITHQVVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF++ LN L I IL V +H+ +SA+ R Y Y I + Sbjct: 61 VVHFNIDCVIPANSYSDILNGLL--PSAIRILESVEVKDSWHSCYSAMYRHYRYVINNSK 118 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD M A++ + G HDF F+ Q + I I + ++ Sbjct: 119 FPNLFINNWSWHRYQKILDEVLMSNASKLMEGEHDFFAFQKSGSQRKNSITKIKNVEIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K + Q + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISPEIFTDIWVNQKKNDVKESAPAKGL 238 Query: 240 YFDSVEYS 247 F + Y Sbjct: 239 CFVNAVYE 246 >gi|146282143|ref|YP_001172296.1| tRNA pseudouridine synthase A [Pseudomonas stutzeri A1501] gi|145570348|gb|ABP79454.1| tRNA-pseudouridine synthase I [Pseudomonas stutzeri A1501] Length = 286 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y G+QRQ+ SIQ S+E A+ V G V + AGRTD+ VHA Q Sbjct: 19 RIALGVEYKGSRYRGFQRQRAGVPSIQESLENALTRVAGGHPVTLSCAGRTDALVHASGQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L IS+ + F ARFSA+ R Y Y I Q Sbjct: 79 VVHFDTPVERSMHAWVMGANMNL--PPDISVTWAKKMPPHFDARFSAMARRYRYVIYNDQ 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E MR AA LVG HDF+ FR+ CQA SPI+TI H ++ F Sbjct: 137 IRPAHMAEEVTWNHRPLDIERMRAAAAALVGTHDFSAFRARQCQAKSPIKTIHHLELLQF 196 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI I V A +FLH +R+F G L +G G+ + L+++ R+ G A P GLY Sbjct: 197 GRLIVIDVRANAFLHHMVRNFAGVLMTIGAGERPVEWAAQVLESRVRRTGGVTAHPYGLY 256 Query: 241 FDSVEYS 247 V+Y Sbjct: 257 LVEVDYP 263 >gi|317403279|gb|EFV83796.1| pseudouridylate synthase I [Achromobacter xylosoxidans C54] Length = 268 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 4/244 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALRQVAH 63 M + Y+GS + GWQ Q + ++Q ++E A+ G + V AGRTD+GVH QV H Sbjct: 1 MGLAYDGSAWQGWQTQPHRQTVQDTLEAALAQFCGVTDAVPTICAGRTDTGVHGAMQVIH 60 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D + + +NA+L +IS+ V FHARFSA R+Y+Y + + Sbjct: 61 LDTTLDRRMESWVRGVNAFL--PSSISVQWAKAVPDAFHARFSARARTYVYLLWRGRVRP 118 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 AL GRA + LD MR AA L+G HDF++FRS CQA P+R + D++ G Sbjct: 119 ALWAGRAGWCYQPLDVGAMRAAANALLGEHDFSSFRSSQCQAKHPVRIMHRLDIDERGPF 178 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A +FLH +R+ +G+L +G G+ + + + L +DR+ P P+GLY + Sbjct: 179 LVFTLRANAFLHHMVRNIMGALLQIGQGRESVDWMAQLLSWRDRRRGAPTFSPDGLYLSA 238 Query: 244 VEYS 247 ++Y Sbjct: 239 IDYP 242 >gi|149365240|ref|ZP_01887275.1| tRNA pseudouridine synthase A [Yersinia pestis CA88-4125] gi|153950548|ref|YP_001400399.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 31758] gi|218929838|ref|YP_002347713.1| tRNA pseudouridine synthase A [Yersinia pestis CO92] gi|25009503|sp|Q8ZD27|TRUA_YERPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901277|sp|Q668W9|TRUA_YERPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166991167|sp|A7FGM1|TRUA_YERP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115348449|emb|CAL21385.1| tRNA pseudouridine synthase A [Yersinia pestis CO92] gi|149291653|gb|EDM41727.1| tRNA pseudouridine synthase A [Yersinia pestis CA88-4125] gi|152962043|gb|ABS49504.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 31758] Length = 264 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF +N++L I++ + VD FHARFSA R Y Y I + + Sbjct: 61 VHFVTSAVRKDAAWTMGVNSHL--PADIAVRWVKTVDNDFHARFSATARRYRYIIFSHRY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 119 RPAILAQGVTHCYMPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 179 AYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLYL 238 Query: 242 DSVEYS 247 SV+Y Sbjct: 239 VSVDYP 244 >gi|258512640|ref|YP_003186074.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479366|gb|ACV59685.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 262 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+GSG+ G+ RQ+ ++QG +E + + G ++V G+GRTD GVHA QV Sbjct: 5 RRIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDILVEGSGRTDRGVHARAQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL + L L + + VD+ FHARFS +R++Y Y + Sbjct: 65 VHFDLPYGPPADRMVHVLRRRL--PADLLPRDAGEVDEGFHARFSVVRKTYRYTLDLAPL 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +W P+ LD M+ AA+HL+G HDFT+F + + +R ID + G Sbjct: 123 PSLYWYRFSWHHPEPLDLAAMQEAARHLLGEHDFTSFCAAEARQRDKVRRIDRVEFRQDG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I FL +R VG+L VG G+ + L+A+DR+ G APP GL Sbjct: 183 SRLHIEFEGNGFLQYMVRILVGTLVKVGRGQERPDRIPLILEARDRRLAGETAPPHGLCL 242 Query: 242 DSVEYS 247 +VEY Sbjct: 243 WNVEYP 248 >gi|313672355|ref|YP_004050466.1| tRNA pseudouridine synthase a [Calditerrivibrio nitroreducens DSM 19672] gi|312939111|gb|ADR18303.1| tRNA pseudouridine synthase A [Calditerrivibrio nitroreducens DSM 19672] Length = 248 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 130/242 (53%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +EY+G+ + GWQ QK ++Q IE A+ + + + + G+GRTD+GVHAL QV +F Sbjct: 9 KCTVEYDGTEFHGWQFQKGLVTVQSEIEAALSKIYKKQIHIIGSGRTDAGVHALAQVFNF 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L LN+ L +I I + VD FHA+ SA ++YLY+I+ + P A Sbjct: 69 RAEKYIESEPLNLGLNSLL--PRSIIIKKVEDVDVNFHAQKSAKSKTYLYKILNSELPSA 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + R W + S+D E VG DF+ ++ + +RTI+ +V ++I Sbjct: 127 FLRNRVWWVRNSIDIEIFSEILSQFVGTFDFSAMCTMKSLKENSVRTINFINVYKTEHII 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FLH +R+ +G+ + K + + + ++++DRK+ GP APP+GLY V Sbjct: 187 NIEINANGFLHNMVRNIIGTAFFIYRKKLHPSTVMEIIESRDRKKGGPTAPPQGLYLKEV 246 Query: 245 EY 246 Y Sbjct: 247 FY 248 >gi|294778889|ref|ZP_06744305.1| tRNA pseudouridine synthase A [Bacteroides vulgatus PC510] gi|294447198|gb|EFG15782.1| tRNA pseudouridine synthase A [Bacteroides vulgatus PC510] Length = 257 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 1 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR+ Sbjct: 61 AHFDYDRELDCVQITEKLNRLL--PPDIAVYAVKRVKDDAHARFDATYRTYKYYVTTRK- 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 118 -DPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 177 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LVDVGYP 243 >gi|260881651|ref|ZP_05404943.2| tRNA pseudouridine synthase A [Mitsuokella multacida DSM 20544] gi|260848088|gb|EEX68095.1| tRNA pseudouridine synthase A [Mitsuokella multacida DSM 20544] Length = 264 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 123/247 (49%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y+G+ Y G+QRQ ++Q +E+ + + G+ + + AGRTD+GVHA Q Sbjct: 14 RNIVLKVAYDGTAYHGFQRQTPPIVAVQNILEEKLQTIFGDTIELAAAGRTDAGVHAYGQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + +A N+ L D I + D F AR SA ++Y+YRI + Sbjct: 74 VVNFFTDGRIPVDRIARAANSLL--PDDIVVRAAGEADTDFSARHSAKSKTYVYRIQQGE 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P + AW I + LD MR A ++G HDF+ FR+ SP+RT+ + Sbjct: 132 VPDPMTARYAWYIRRPLDVAAMREALGAILGTHDFSAFRASGGAPMSPVRTMYEATIEEA 191 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + R+ FL+ +R+ +G+L VG G T + L+ +DR + AP GL Sbjct: 192 AGQQLICRIHGSGFLYHMVRNIIGTLANVGLGVLTPARFGEILEGRDRTKASATAPACGL 251 Query: 240 YFDSVEY 246 Y + V+Y Sbjct: 252 YLEHVDY 258 >gi|73541994|ref|YP_296514.1| tRNA pseudouridine synthase A [Ralstonia eutropha JMP134] gi|123774054|sp|Q46YW3|TRUA_RALEJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72119407|gb|AAZ61670.1| tRNA pseudouridine synthase [Ralstonia eutropha JMP134] Length = 273 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E +I G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIAIGLHYDGAAFSGWQSQPHRNTVQDYLEDSIERFAGVRLLTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D + + +NA+L +I++ VD+ FHARF A R Y Y + T Sbjct: 61 VIHLDTTLDRTTFSWVRGINAFL--PPSIALQWARPVDESFHARFLAFERMYYYALYTGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L GRA + + LD + M+ A++ L+G DF++FR+ CQA SP++T+ Sbjct: 119 HRVPLAHGRAGYLMLPPGQRLDVDAMQAASRCLLGEQDFSSFRAAECQAKSPVKTMYDVT 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + GN + +R A +FLH +R+ +G L VG G++ L + L A+DRK P P Sbjct: 179 LKADGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPPEWLAEVLAARDRKLAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V+Y Sbjct: 239 DGLYLADVKYP 249 >gi|330993399|ref|ZP_08317334.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1] gi|329759429|gb|EGG75938.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1] Length = 275 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 118/249 (47%), Positives = 151/249 (60%), Gaps = 6/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 R+ +++EY+G G+ GWQRQK SIQG +E A +T G V AGRTD+GVHA Sbjct: 21 RWAVLMEYDGRGFVGWQRQKTTGLLSIQGLLEDAATRLTNGHDVRSITAGRTDAGVHASG 80 Query: 60 QVAH--FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH F + LN Y+K + +L V Q++ARFSAI R+Y YRI+ Sbjct: 81 QVAHLDFPADVTLSSATVRDGLNFYMK-PHPVVVLMARPVLPQWNARFSAISRAYRYRIL 139 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R A ALE G+ W + LD + MR AA HL+GRHDFT+FR+ CQA SP+RT+D DV Sbjct: 140 NRAARPALEDGQVWHVRAPLDVDGMRQAAAHLLGRHDFTSFRATACQARSPVRTLDRLDV 199 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I ARSFLH Q+R+ G+LKLVG+G+W + AL A DR+ GP APPE Sbjct: 200 KREGEYVVIEAAARSFLHHQVRNMAGTLKLVGEGRWEPAQVAHALAACDRRAAGPTAPPE 259 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 260 GLCLTGVGY 268 >gi|194290207|ref|YP_002006114.1| tRNA pseudouridine synthase a [Cupriavidus taiwanensis LMG 19424] gi|238692732|sp|B3R117|TRUA_CUPTR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193224042|emb|CAQ70051.1| tRNA pseudouridylate synthase I [Cupriavidus taiwanensis LMG 19424] Length = 272 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIALGLHYDGAAFSGWQSQPHRNTVQDHLEDAIERFAGVRLLTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + +NA+L +I++ VD FHARF A R Y Y + T Sbjct: 61 VIHLDTELVREPFSWVRGVNAFL--PPSIALQWALPVDVGFHARFLAYERMYYYALYTGP 118 Query: 121 APLALEKGRAWL----IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + GRA + LD E MR AA HL+G HDF+ FR+ CQA SP++T+ Sbjct: 119 HRVPMVHGRAGYQMLPPGQRLDVEAMRAAAAHLIGEHDFSAFRAAECQAKSPVKTMYDVT 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + GN + +R A +FLH +R+ +G L VG ++ + + L +DRK P P Sbjct: 179 IRDDGNWVFLRFRASAFLHHMVRNLMGCLVAVGRRRYPPDWMAQVLAGRDRKLAAPTFMP 238 Query: 237 EGLYFDSVEYS 247 +GLY V+Y Sbjct: 239 DGLYLVGVKYP 249 >gi|225025215|ref|ZP_03714407.1| hypothetical protein EIKCOROL_02112 [Eikenella corrodens ATCC 23834] gi|224941973|gb|EEG23182.1| hypothetical protein EIKCOROL_02112 [Eikenella corrodens ATCC 23834] Length = 269 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+GS +FGWQ+Q +G ++Q ++E A+ + E + V AGRTD+GVHA QV Sbjct: 8 RRALFVSYDGSRFFGWQKQADGIATVQSALEAALSELAQERISVVTAGRTDTGVHATAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA L + +++ + V +FHARF A R Y Y + + Sbjct: 68 VHFDSAARRPDQAWVRGVNALL--PEGVAVWRVQDVAPEFHARFDACGRRYRYLLQSAPV 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L GRA +LD MR AA LVG HDF++FR+ CQA SP++T+ + Sbjct: 126 RSPLLVGRAGWTHYALDMAAMRQAAALLVGEHDFSSFRAAECQAKSPVKTLYRVALCGTP 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + +FLH +R+ +G+L VG GK + L A+ RK P P+GLY Sbjct: 186 ELMAVDFHGNAFLHHMVRNLMGALVYVGCGKLSVDGFAGLLAARSRKLAPPTFMPDGLYL 245 Query: 242 DSVEYS 247 ++Y Sbjct: 246 TGIDYP 251 >gi|126658015|ref|ZP_01729167.1| tRNA pseudouridine synthase A [Cyanothece sp. CCY0110] gi|126620653|gb|EAZ91370.1| tRNA pseudouridine synthase A [Cyanothece sp. CCY0110] Length = 285 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 118/246 (47%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y GS + GWQRQ N ++Q IE +I V G +HGAGRTD+GVHA QVA Sbjct: 12 RVALVIQYQGSRFHGWQRQPNQRTVQEVIESSIAEVLGYHTPIHGAGRTDAGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + P + LN L D I I + V +HARFSA+ R Y Y T + P Sbjct: 72 HFDYISPIPPQRWVEILNQRL--PDDILIRGCAEVSLTWHARFSALWRRYRYSFYTDKCP 129 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W LD E M+ A L+GRH FR + G Sbjct: 130 NLFVRPFSWHYYYEPLDAELMQKALTPLLGRHHLAAFRRAGSHRHHSWVEVQETRCYRQG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R VG L VG GK + T+ + Q Q R++ AP +GL Sbjct: 190 QFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLTNFTEIWQNQRREQVKYSAPAKGLCL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 LRVGYP 255 >gi|323485798|ref|ZP_08091133.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323693150|ref|ZP_08107368.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] gi|323400786|gb|EGA93149.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323502633|gb|EGB18477.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] Length = 265 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 135/255 (52%), Gaps = 12/255 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++++Y+G+ Y GWQ+Q N ++QG +E + + G V VHG+GRTD+GVHAL QV Sbjct: 5 NIRILLQYDGTRYDGWQKQGNTQQTVQGKLEAVLSCLAGGPVEVHGSGRTDAGVHALGQV 64 Query: 62 AHFDLV---------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 A+F L + + LN YL + I +L +FH+R +A+ ++Y Sbjct: 65 ANFHLPLSVFCGSQTEAADMIRIKNYLNEYL--PEDIRVLVAEEARPRFHSRLNALSKTY 122 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YRI T E+ + + K D E M+ AA LVG HDF F S+ S +RTI Sbjct: 123 IYRIETADKNDVFERKYRYGLGKEPDLEIMKRAASILVGTHDFRAFSSLKKTKKSTVRTI 182 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + D+ G +EI + FL+ +R VG+L G + + +++AL++ DR G Sbjct: 183 NRIDIRRDGTQLEILLEGNGFLYNMVRIIVGTLVEAGLLERSVQSVKEALESLDRSLAGR 242 Query: 233 LAPPEGLYFDSVEYS 247 AP +GL+ +V Y Sbjct: 243 TAPAKGLFLAAVAYE 257 >gi|315127206|ref|YP_004069209.1| tRNA pseudouridine synthase A [Pseudoalteromonas sp. SM9913] gi|315015720|gb|ADT69058.1| tRNA pseudouridine synthase A [Pseudoalteromonas sp. SM9913] Length = 264 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +EKA+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVEKALSRICNHPVEIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V +N L I+I V + FHARFSA R Y Y I Sbjct: 61 VHFDTHAEREMVAFTLGMNTLL--PKDIAIRFAQPVAEDFHARFSATARRYRYVIYNYAF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A Q+L+G HDFT+FR++HCQA++ RTI H V G Sbjct: 119 RGAVLNEGVTHFHHPLDEVKMQQACQYLLGEHDFTSFRALHCQANTATRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 AYVIIDIKANAFLHHMVRNITGCLMDIGLHKHEPIWLKELLDVKERAKASATAKAAGLYL 238 Query: 242 DSVEYS 247 V+Y Sbjct: 239 VDVDYP 244 >gi|262375036|ref|ZP_06068270.1| tRNA pseudouridine synthase A [Acinetobacter lwoffii SH145] gi|262310049|gb|EEY91178.1| tRNA pseudouridine synthase A [Acinetobacter lwoffii SH145] Length = 265 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + IE+ G Y GWQ +Q +S+Q +IEK + V + + +HGAGRTD+GVHA Sbjct: 1 MQRFAVGIEFCGMHYRGWQTQQPGVASVQETIEKVLSKVADQPISLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D FHARF A R Y Y + Sbjct: 61 MVAHFDTDAVRSERGWLMGCNSQL--PKDISIQWIKEMDHSFHARFKAQARRYRYVVYNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + LD E M AA+ G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PVRPALLHKQVTHVYAPLDVEQMIYAAKKFEGTHNFESFRAAACQSNQPVRHVSHCRLIQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + + ++ A+DRK G AP +GL Sbjct: 179 HGQYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYAADHIDNIFAAEDRKAAGVTAPADGL 238 Query: 240 YFDSVEYS 247 YF +Y Sbjct: 239 YFIHADYP 246 >gi|224542274|ref|ZP_03682813.1| hypothetical protein CATMIT_01449 [Catenibacterium mitsuokai DSM 15897] gi|224524816|gb|EEF93921.1| hypothetical protein CATMIT_01449 [Catenibacterium mitsuokai DSM 15897] Length = 245 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I+ Y+G+ ++GWQ Q + ++Q I+KAI+ +T E V +H +GRTD+GVHA+ QV Sbjct: 1 MRIKCIVTYDGTHFYGWQIQPDKRTVQEEIQKAIYKITHEEVTIHSSGRTDAGVHAVGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ +E +ALN +L D I I + IVD+ FHAR+SA ++ Y Y + T+ Sbjct: 61 FHFDINKEIPEKQWIRALNNFL--PDDIYIKDSFIVDESFHARYSAKKKEYRYLVSTKPY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +E+ + +SLD E MR A+ +G HDF +F + IR I+ D+ Sbjct: 119 -NPIERLYVYQHNRSLDIEAMRECAKIFLGEHDFASFCVFNG-LGDTIRVIETIDIQEKD 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ +R + F +R G+L VG T +E L ++ +K+C A PEGLY Sbjct: 177 GIVTMRFIGNGFRRYMVRLITGALIQVGSHWRTKEFVEDLLNSKGKKKCLFKAKPEGLYL 236 Query: 242 DSVEYS 247 V Y Sbjct: 237 QEVYYE 242 >gi|324992392|gb|EGC24313.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK405] gi|324996086|gb|EGC27997.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK678] gi|327460621|gb|EGF06956.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1] gi|327472350|gb|EGF17781.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK408] gi|327488890|gb|EGF20688.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1058] Length = 249 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMLVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|148259428|ref|YP_001233555.1| tRNA pseudouridine synthase A [Acidiphilium cryptum JF-5] gi|326402654|ref|YP_004282735.1| tRNA pseudouridine synthase A [Acidiphilium multivorum AIU301] gi|166228673|sp|A5FVK4|TRUA_ACICJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146401109|gb|ABQ29636.1| tRNA pseudouridine synthase A [Acidiphilium cryptum JF-5] gi|325049515|dbj|BAJ79853.1| tRNA pseudouridine synthase A [Acidiphilium multivorum AIU301] Length = 255 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 110/248 (44%), Positives = 146/248 (58%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALR 59 M R+ + +EY+G G+ GWQRQ+NG S+Q +E A + G V AGRTD+GVHA Sbjct: 1 MRRWALRLEYDGRGFVGWQRQENGLSVQEVLETAASRLCGGDVPDSVVAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA +L + +ALN ++K I + RFSAI R+Y Y I+ R Sbjct: 61 QVAALELPDRLDARAVREALNFHMKPHAVAVIEAAPAPSAAWSPRFSAIGRAYRYLILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A AL G W + LD M AAQ L+GRHDFT+FR+ CQA+SP+RT+D DV Sbjct: 121 SARPALRDGFVWHVKAPLDAPAMHEAAQSLLGRHDFTSFRASSCQANSPLRTLDRLDVRR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I ARSFLH Q+R+ VG+LKLVG+G+W + +AL A+DR GP APP+GL Sbjct: 181 DGETVVIEAEARSFLHHQVRNMVGTLKLVGEGRWRVGRVAEALAARDRSAAGPTAPPDGL 240 Query: 240 YFDSVEYS 247 +V Y Sbjct: 241 VLVAVRYE 248 >gi|116515069|ref|YP_802698.1| hypothetical protein BCc_129 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256923|gb|ABJ90605.1| pseudouridylate synthase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 269 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +++ +EY+GS Y GWQ+QK+ +IQ IE A+ + + V AGRTD GVHA+ Q+ Sbjct: 1 MKFVFGVEYDGSIYHGWQKQKSVLTIQECIEHALSKIANSKIEVICAGRTDKGVHAITQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF + + LN+ L I++L L V FHARFSA+ RSY Y I R+ Sbjct: 61 VHFSSLIIRNEEVWFTGLNSLL--PKNITVLWLKKVSSNFHARFSALSRSYRYIIFNRKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K + + LD M+ ++Q L+G HDF++F+S CQ+ S + I + Sbjct: 119 RSSFLKNYYFHVRNFLDIYKMKTSSQFLIGNHDFSSFKSSGCQSFSSRKNIFSLIIYRIN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A SFL+ +R+ VG L LVG K ++ LQ +D K+ P +GLYF Sbjct: 179 DFIIIDITANSFLYHMVRNIVGCLILVGLSKKKPEWVQYILQKKDIKKTYSTVPAQGLYF 238 Query: 242 DSVEYS 247 Y Sbjct: 239 LFASYP 244 >gi|327480383|gb|AEA83693.1| tRNA pseudouridine synthase A [Pseudomonas stutzeri DSM 4166] Length = 275 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y G+QRQ+ SIQ S+E A+ V G V + AGRTD+ VHA Q Sbjct: 8 RIALGVEYKGSRYRGFQRQRAGVPSIQESLENALTRVAGGHPVTLSCAGRTDALVHASGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L IS+ + F ARFSA+ R Y Y I Q Sbjct: 68 VVHFDTPVERSMHAWVMGANMNL--PPDISVTWAKKMPPHFDARFSAMARRYRYVIYNDQ 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E MR AA LVG HDF+ FR+ CQA SPI+TI H ++ F Sbjct: 126 IRPAHMAEEVTWNHRPLDIERMRAAAAALVGTHDFSAFRARQCQAKSPIKTIHHLELLQF 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI I V A +FLH +R+F G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 GRLIVIDVRANAFLHHMVRNFAGVLMTIGAGERPVEWAAQVLESRVRRTGGVTAHPYGLY 245 Query: 241 FDSVEYS 247 V+Y Sbjct: 246 LVEVDYP 252 >gi|257088005|ref|ZP_05582366.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|256996035|gb|EEU83337.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] Length = 234 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 123/236 (52%), Gaps = 5/236 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + A P +D E ++ A L+G HDFT+F + +RTI V Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 N G+ + FL+ IR VG+L +G+G+ T + + A+DR GP Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPT 234 >gi|254514517|ref|ZP_05126578.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR5-3] gi|219676760|gb|EED33125.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR5-3] Length = 272 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 R + IEY+GS Y GWQ Q ++Q +E A+ + V V AGRTD+GVHA Sbjct: 6 QRVALKIEYDGSAYSGWQSQPQLPKVRTVQTEVEVALSKIANSPVRVFCAGRTDTGVHAA 65 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q HFD + NA L + + + V + FHAR SA+ R Y Y I Sbjct: 66 AQWLHFDAPCDRSLKAWIVGANAQL--PLDVRLTDGLSVAEDFHARHSAVARQYDYLIAN 123 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P AL R + + LD MR + Q L+G DF+ FR+ CQ+++P+R ++ V Sbjct: 124 TRTPSALLANRMVWVRQPLDANLMRCSLQALLGEQDFSAFRAASCQSTTPMRFMESTQVF 183 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G++I+IRVVA +FLH +R+ VGS VG + + L + L +DR + APP+G Sbjct: 184 RRGDIIQIRVVANAFLHHMVRNIVGSCLQVGLCEQPAGWLGELLAGRDRTQAAATAPPQG 243 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 244 LYLTGVRYP 252 >gi|300362359|ref|ZP_07058535.1| tRNA-pseudouridine synthase I [Lactobacillus gasseri JV-V03] gi|300353350|gb|EFJ69222.1| tRNA-pseudouridine synthase I [Lactobacillus gasseri JV-V03] Length = 255 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 6/244 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G + G+Q Q ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV HFD Sbjct: 1 MAYDGHLFHGFQIQPKERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQVIHFDY 60 Query: 67 V-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +E + ALNA + + IV+ FH ++S + Y Y + + Sbjct: 61 PGKEIPAKNMMLALNALM--PIDTVFFDSEIVNSDFHVQYSTKGKWYRYIVDQHRFTDPF 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN--L 183 + P LD + M+ AA+ L+G+HDFT+F + Q +RTI + ++ S + Sbjct: 119 NRFYTGHYPYPLDIDLMQRAAKDLIGKHDFTSFAASGGQIVDKVRTIYYVNITSDPDNKK 178 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + FL+ +R VG+L +G+ K D+ + L A+DR+E AP GLY Sbjct: 179 IIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTAPASGLYLQH 238 Query: 244 VEYS 247 V Y Sbjct: 239 VFYE 242 >gi|261364797|ref|ZP_05977680.1| tRNA pseudouridine synthase A [Neisseria mucosa ATCC 25996] gi|288566820|gb|EFC88380.1| tRNA pseudouridine synthase A [Neisseria mucosa ATCC 25996] Length = 270 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ +I+ Y+GS ++GWQ+Q G ++Q ++E A+ + E + AGRTD+GVHA QV Sbjct: 13 RWALILSYDGSRFYGWQKQAGGLPTVQTTLEYALSQIASENIRTIVAGRTDTGVHATAQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + +S+L V FHARF A R Y Y + + Sbjct: 73 IHFDTTVVRPEQAWVRGVNAHL--PEGVSVLFAQQVASHFHARFDAYGRRYRYLLESSPV 130 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +GR LD + M+ AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 131 RSPILQGRVGWTHLKLDPDKMQQAALLLEGEHDFSSFRAAECQAKSPIKTLYSAKISGTP 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + +FLH +R+ +G+L VG G+ + + + + + R + P P+GLY Sbjct: 191 QFLKLDLHGNAFLHHMVRNIMGALVYVGSGRLSVSGFQTLIGERSRLKAPPTFMPDGLYL 250 Query: 242 DSVEYS 247 V+Y Sbjct: 251 TGVDYP 256 >gi|225388793|ref|ZP_03758517.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme DSM 15981] gi|225045068|gb|EEG55314.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme DSM 15981] Length = 250 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MI++Y+G+ Y GWQRQ N +IQG +E + + E + VHG+GRTD GVHA Q Sbjct: 1 MNYKMILQYDGTRYDGWQRQGNTDRTIQGKLEAVLGRLAEETLEVHGSGRTDGGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F L + P + LN YL + I +L L+ ++FH+R +A R++Y Y+I Sbjct: 61 VANFHLKQAREPEEIRAYLNRYL--PEDICVLELTAAPERFHSRLNACRKTYRYQIWMDG 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 ++ + + K LD M AA L+G HDF +F S +RTI + Sbjct: 119 KTDVFQRDYFYGLGKQLDIGQMERAAGTLLGTHDFKSFCGNKKMKKSTVRTITAIRLIRL 178 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + V FL +R G+L VG GK + LE L+ ++R G APPEG Sbjct: 179 CDGKALAVDVTGNGFLQQMVRILAGTLIEVGLGKREADSLEAVLELKERSAAGFTAPPEG 238 Query: 239 LYFDSVEYS 247 L +V+Y Sbjct: 239 LCLMNVQYE 247 >gi|260549154|ref|ZP_05823375.1| tRNA-pseudouridine synthase I [Acinetobacter sp. RUH2624] gi|260407882|gb|EEX01354.1| tRNA-pseudouridine synthase I [Acinetobacter sp. RUH2624] Length = 265 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 132/248 (53%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADESIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPEMGWLRGANSQL--PKDISIQWIKLMDENFHARFKATARRYRYVIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PCRPALLHKQVTHIYQQLDVQKMIKAASKFEGTHNFETFRAAACQSNKPVRHVTHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDTMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCYYP 246 >gi|163791438|ref|ZP_02185847.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] gi|159873302|gb|EDP67397.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] Length = 246 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M M +EY+G+ Y GWQR + +IQG IE I +TG + G+GRTD+G HA Sbjct: 1 MRNIKMTVEYDGARYLGWQRLTDSDKTIQGKIENTITAMTGTKTEIVGSGRTDAGAHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + L V ++FHAR++A + Y Y + Sbjct: 61 QVANFKTESTMELQAMLDHLNRYL--PRDIVVKKLEEVPERFHARYNASGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P E+ ++ LD + M A LVG+HDF F S+ S +RTI+ ++ Sbjct: 119 SVPSVFERNFSYEYAGDLDIDKMNKACDKLVGKHDFIGFSSLKKSKKSTVRTINEIKIHK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + FL+ IR +G++ +G G ++ ++ R E G P +GL Sbjct: 179 EGDLLHFTFIGEGFLYKMIRIIMGTILEIGAGTTELESIDAIFKSGIRSEAGMTVPSQGL 238 Query: 240 YFDSVEYS 247 + D V Y Sbjct: 239 FLDEVYYD 246 >gi|300814956|ref|ZP_07095184.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300510926|gb|EFK38198.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 243 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + Y+G+ Y G+Q Q +I+G + KAI + ++ AGRTD GVHAL Q Sbjct: 1 MNILIKVTYDGTNYHGYQIQNKLKTIEGELSKAINDTLKKETKIYSAGRTDRGVHALGQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L + +N +L D IS+++ V FHARFSA + Y Y + + Sbjct: 61 VNFYTDTTIDLGNLPRVINFHL--PDDISVISAKEVPFDFHARFSAREKIYRYVVYNNKY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ RA+ P SLD M + ++L+G+ DF +F IRTI V Sbjct: 119 RNAIYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I +SFL IR +G+ +G GK +++ L+ Q+RK GP AP GLY Sbjct: 179 KFIYFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYL 238 Query: 242 DSVEY 246 ++ Y Sbjct: 239 MNILY 243 >gi|218289976|ref|ZP_03494153.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius LAA1] gi|218239961|gb|EED07148.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius LAA1] Length = 262 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+GSG+ G+ RQ+ ++QG +E + + G +VV G+GRTD GVHA QV Sbjct: 5 RRIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDIVVEGSGRTDRGVHARAQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL + L + ++ + VD FHARFS +R++Y Y + Sbjct: 65 VHFDLPYGPPADRMVHVL--HRRLPADLLPRQADEVDDGFHARFSVVRKTYRYTLDLAPL 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +W +P+ LD M+ AA+HL+G HDFT+F + +R ID + G Sbjct: 123 PSLYWYRFSWHLPEYLDLAAMQEAARHLLGEHDFTSFCAAEAPQRDKVRRIDRVEFRQDG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I FL +R VG+L VG GK + L+A+DR+ G APP GL Sbjct: 183 SRLHIEFEGNGFLQYMVRILVGTLVKVGRGKERPDRIPLILEARDRRLAGETAPPHGLCL 242 Query: 242 DSVEYS 247 +VEY Sbjct: 243 WNVEYP 248 >gi|258422666|ref|ZP_05685571.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635] gi|257847077|gb|EEV71086.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635] Length = 267 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNKAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|262369979|ref|ZP_06063306.1| tRNA-pseudouridine synthase I [Acinetobacter johnsonii SH046] gi|262315018|gb|EEY96058.1| tRNA-pseudouridine synthase I [Acinetobacter johnsonii SH046] Length = 265 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + IE+ G+ Y GWQ +Q S+Q +IEK + + E + +HGAGRTD+GVHA Sbjct: 1 MQRFAIGIEFCGTHYRGWQTQQTGVISVQETIEKVLSKIANEPISLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D+ FHARF A R Y Y + Sbjct: 61 MVAHFDSSALRSERGWLMGSNSQL--PKDISIQWIKAMDQDFHARFKAQARRYRYVVYNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + +LD M AAQ G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PQRPALMHKQVTHAYYALDVAKMMQAAQKFEGTHNFESFRAAACQSNQPVRHVSHCRLIQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + +E A+DRK G APP+GL Sbjct: 179 HGPYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEVEHIEAIFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEYS 247 YF +Y Sbjct: 239 YFIHADYP 246 >gi|160887061|ref|ZP_02068064.1| hypothetical protein BACOVA_05075 [Bacteroides ovatus ATCC 8483] gi|156107472|gb|EDO09217.1| hypothetical protein BACOVA_05075 [Bacteroides ovatus ATCC 8483] Length = 267 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V HARF A R+Y Y + T + Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLL--PPDISVYRVCRVRPDTHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 237 FLVNVEYP 244 >gi|150005081|ref|YP_001299825.1| tRNA pseudouridine synthase A [Bacteroides vulgatus ATCC 8482] gi|149933505|gb|ABR40203.1| tRNA pseudouridine synthase A [Bacteroides vulgatus ATCC 8482] Length = 267 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 11 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR+ Sbjct: 71 AHFDYDRELDCVQITEKLNRLL--PPDIAVYAVKRVKDDAHARFDATYRTYKYYVTTRK- 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 128 -DPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 187 GTEWVFIIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 246 Query: 241 FDSVEYS 247 V Y Sbjct: 247 LVDVGYP 253 >gi|261380083|ref|ZP_05984656.1| tRNA pseudouridine synthase A [Neisseria subflava NJ9703] gi|284797300|gb|EFC52647.1| tRNA pseudouridine synthase A [Neisseria subflava NJ9703] Length = 281 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q ++Q ++E+A+ + GE + AGRTD+GVHA Q Sbjct: 13 QRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALTSIAGEQINTIVAGRTDTGVHATAQ 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L D +++L V F+ARF A R Y Y + + Sbjct: 73 VVHFDTSVSRPEQAWVRGVNAHL--PDGVAVLLAQKVAPHFNARFDAYGRHYRYLLESSP 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 131 VCSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYRASISGT 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + +FLH +R+ +G+L VG G+ + + + A+ R + P +GLY Sbjct: 191 PRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFQSIFYARSRLKAPPTFMSDGLY 250 Query: 241 FDSVEYS 247 V+Y Sbjct: 251 LTGVDYP 257 >gi|51245176|ref|YP_065060.1| tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] gi|62901428|sp|Q6ANM1|TRUA1_DESPS RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|50876213|emb|CAG36053.1| related to tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] Length = 251 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M C++I ++G+ Y GWQ+Q + ++IQG IE + ++ + + +HGAGRTD+GVHA Sbjct: 1 MRNICLLIAFDGTDYSGWQKQHHANTIQGEIEARLKRLSVKEISLHGAGRTDAGVHADGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHF +ALN L I IL + + FHARF+A + Y YR+ T Sbjct: 61 TAHFHTDTRLTCNDFQRALNRML--PGAIRILQVREMADDFHARFAATGKEYHYRLFTGG 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS------PIRTIDH 174 ++ K +D E M+ Q ++G HDF++F + + + +RTI Sbjct: 119 VIPPQKRLYMLHQEKPIDQEAMQKCLQIIIGTHDFSSFENTGSRDKTRTGGKGAVRTILE 178 Query: 175 FDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 F + + FL +R+ VGS+ VG GK + E+AL+ +DR GP Sbjct: 179 ARYEQFEEDSWHFVFIGDGFLRNMVRNIVGSILEVGRGKESVEWFEQALKEKDRNAAGPT 238 Query: 234 APPEGLYFDSVEY 246 AP GL V Y Sbjct: 239 APAHGLKLFQVFY 251 >gi|82751809|ref|YP_417550.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122] gi|123727496|sp|Q2YYM7|TRUA_STAAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|82657340|emb|CAI81781.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122] Length = 267 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PVDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQRGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|15605190|ref|NP_219976.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D/UW-3/CX] gi|8134751|sp|O84469|TRUA_CHLTR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3328897|gb|AAC68063.1| Pseudouridylate Synthase I [Chlamydia trachomatis D/UW-3/CX] gi|296436918|gb|ADH19088.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11222] gi|297748594|gb|ADI51140.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-EC] gi|297749474|gb|ADI52152.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-LC] Length = 267 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 129/251 (51%), Gaps = 6/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF P + K LNA L I I + + D+ FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDEDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 239 YGLSLHHVCYP 249 >gi|163747262|ref|ZP_02154617.1| tRNA pseudouridine synthase A [Oceanibulbus indolifex HEL-45] gi|161379537|gb|EDQ03951.1| tRNA pseudouridine synthase A [Oceanibulbus indolifex HEL-45] Length = 257 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 118/251 (47%), Positives = 156/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + ++QG IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKIEYHGAPFNGWQRQVDLPTVQGFIEAALARLEPGAHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK I+I + + + FHARFSA+ R Y + I++R+ Sbjct: 61 VAHCDMARDWSPFRLGEALNYHLK-PQPIAITDCVLAPEDFHARFSALERRYHFCILSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP + G W + LD E M+ AA LVG+HDFTTFRS CQA SP++T+D DV Sbjct: 120 APAVHQAGLVWQVKHRLDVEAMQAAADLLVGKHDFTTFRSTICQAVSPVKTLDRLDVREV 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G V ARSFLH Q+RSFVG+L+ VG G W+ D+ AL A+DR CGP+ PP Sbjct: 180 ETATGTEYHFDVRARSFLHNQVRSFVGTLERVGAGSWSVADMGAALAAKDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 240 HGLYLAHVSYP 250 >gi|49484433|ref|YP_041657.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA252] gi|257423704|ref|ZP_05600133.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257426382|ref|ZP_05602784.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257429022|ref|ZP_05605409.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 68-397] gi|257431668|ref|ZP_05608031.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus E1410] gi|257434628|ref|ZP_05610679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M876] gi|282902120|ref|ZP_06310013.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C160] gi|282909528|ref|ZP_06317341.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911780|ref|ZP_06319576.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282915068|ref|ZP_06322845.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M899] gi|282925699|ref|ZP_06333347.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C101] gi|283958992|ref|ZP_06376435.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus A017934/97] gi|293497472|ref|ZP_06665326.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 58-424] gi|293511047|ref|ZP_06669744.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M809] gi|293549653|ref|ZP_06672325.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M1015] gi|295428801|ref|ZP_06821425.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589714|ref|ZP_06948355.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8] gi|56749728|sp|Q6GEL6|TRUA_STAAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49242562|emb|CAG41283.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272722|gb|EEV04824.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257276013|gb|EEV07464.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257279503|gb|EEV10090.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 68-397] gi|257282547|gb|EEV12679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus E1410] gi|257285224|gb|EEV15340.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M876] gi|282312528|gb|EFB42932.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C101] gi|282320789|gb|EFB51123.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M899] gi|282323476|gb|EFB53792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282326638|gb|EFB56938.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282596579|gb|EFC01538.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C160] gi|283789551|gb|EFC28376.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus A017934/97] gi|290918700|gb|EFD95776.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M1015] gi|291096403|gb|EFE26661.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 58-424] gi|291466034|gb|EFF08563.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M809] gi|295127150|gb|EFG56792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus EMRSA16] gi|297578225|gb|EFH96938.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8] gi|312437370|gb|ADQ76441.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH60] gi|315193148|gb|EFU23548.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS00] Length = 264 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|170077660|ref|YP_001734298.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7002] gi|238689046|sp|B1XJI2|TRUA_SYNP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169885329|gb|ACA99042.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7002] Length = 274 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 115/246 (46%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ ++Q IE+ I V G+ + +HGAGRTDSGVHA Q A Sbjct: 11 RIALVIQYIGTHFCGWQRQTAERTVQAVIEETISTVVGQKITIHGAGRTDSGVHAAGQFA 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ K LN L I+I V + +HA+FSA R Y Y I T P Sbjct: 71 HFECESLIPGYKWAKILNDRL--PPDINIRGACEVSQDWHAQFSAQWRRYRYTIYTHPTP 128 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + LD ++ A L+G H F+ + S + + + G Sbjct: 129 NLFIQPYAWHYYQAPLDETLIQAALTPLLGEHHLAAFQRTGSKRSHAWVNVQAAECSRRG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A FL+ +R VG L +G GK + + + + R AP +GL Sbjct: 189 SFIHIEIQANGFLYGMVRLLVGMLVDIGQGKLSLAQFQDIWKNEKRHLVKYSAPAKGLCL 248 Query: 242 DSVEYS 247 V Y Sbjct: 249 LRVGYP 254 >gi|323699460|ref|ZP_08111372.1| tRNA pseudouridine synthase A [Desulfovibrio sp. ND132] gi|323459392|gb|EGB15257.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans ND132] Length = 251 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ + GWQ Q ++QG +E+A+ + G V VHG+GRTD+GVHAL Q Sbjct: 3 MTRIRLTLAYEGTDFCGWQVQPADRTVQGEVERALATILGRAVRVHGSGRTDAGVHALGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + LN L + +L+ + V FHAR+ A+ ++Y Y + + Sbjct: 63 VVHFDCPDGRTGFPWQRGLNGIL--PRDVRVLDAAEVPDDFHARYGAVSKTYEYCLWHER 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 ++ R +D M AA L+G HDF F+++ S +RT+ + Sbjct: 121 GFCLPQRRRFVWNCGPVDFARMEAAAGLLLGEHDFAAFQNVGTDVDSTVRTVTEISRHAG 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + R A FL +R+ VG L G GK + L+A DR PP+G Sbjct: 181 PTAHESVWRFTADGFLKQMVRNLVGCLVACGRGKLDLDGVRVILEAGDRTLAPATVPPQG 240 Query: 239 LYFDSVEY 246 L V Y Sbjct: 241 LTLVRVAY 248 >gi|282920794|ref|ZP_06328512.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C427] gi|282315209|gb|EFB45593.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C427] Length = 264 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G++ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRYEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|222152501|ref|YP_002561676.1| tRNA pseudouridine synthase A [Streptococcus uberis 0140J] gi|254764869|sp|B9DTJ0|TRUA_STRU0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222113312|emb|CAR40884.1| tRNA pseudouridine synthase A [Streptococcus uberis 0140J] Length = 250 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GS + G+QRQ + S+Q IEK + +T G+ + VHGAGRTDSGVHA Sbjct: 1 MTRYKAIISYDGSQFQGFQRQSHARSVQEEIEKTLTKLTNGKEIKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLDQDRDLEKLRFALDT--QSPEDIDFISVEKVSDDFHSRYTKHLKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + + A P LD +N+++A + L+G HDFT F + + +RTI V Sbjct: 119 RPKNPMMRHYATHFPYPLDLDNIQLAIKDLIGTHDFTGFTASGATIENKVRTIIDASVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ Q+R+ VG+L +G+ + ++ L+ +DR+ GP Sbjct: 179 EEDKNFLIFTFTGNGFLYKQVRNMVGTLLKIGNNRMPVDQIKTILEKKDRQLAGPTPAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|94677014|ref|YP_588808.1| tRNA pseudouridine synthase A [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220164|gb|ABF14323.1| tRNA pseudouridine synthase A [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 267 Score = 274 bits (701), Expect = 9e-72, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 126/246 (51%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + I YNGS Y+GWQRQK S+Q S+E+A+ +V E + V AGRTD+GVHA QV Sbjct: 8 KIALGIAYNGSLYYGWQRQKELPSVQASLERALSIVANEKISVFCAGRTDTGVHATGQVV 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ V +NA L +I++ V FHARFSA RSY Y I Sbjct: 68 HFETVALRTNKAWTLGVNANL--PASIAVRWAMTVTLNFHARFSATARSYRYIIYNHPLR 125 Query: 123 LALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + + LD M A Q L+G DFT+FR+ C + +P R + V G Sbjct: 126 PAMLGSSGYMHFYQPLDPLKMDRAGQCLLGERDFTSFRAQQCTSRTPWRNLHQLIVKRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FL+ +R+ VG L +G GK + L +DR G A +GLY Sbjct: 186 SYIIVDITANAFLYRMVRNIVGCLIEIGSGKKPENWIADLLARRDRSLAGITARAKGLYL 245 Query: 242 DSVEYS 247 +V Y Sbjct: 246 VNVYYP 251 >gi|87121856|ref|ZP_01077742.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121] gi|86162885|gb|EAQ64164.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121] Length = 275 Score = 274 bits (701), Expect = 9e-72, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EY GS Y GWQ QK + ++Q +E+A+ + + V AGRTD+ VHA QV Sbjct: 5 KVALVVEYKGSEYKGWQAQKYDVPTVQKCLEEALSKIAAHTIKVVCAGRTDASVHASAQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E +N+ L I+++ + + FHARFSA+ R Y Y I + Sbjct: 65 VHFETDVERSERAWTLGVNSNL--PKDIAVVAAANMHPSFHARFSAVSRRYRYVIYSHPL 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ K LD M+ AA+ VG+HDF++FR++ CQA +P+RTI +F++ G Sbjct: 123 RPAIMSKEVTWTHKKLDILKMQQAAKVFVGKHDFSSFRAVGCQAHTPVRTILNFEIYQSG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH IR+F G L +G G+ + K L A+DR + G PPEGLYF Sbjct: 183 QYIVLDIRANAFLHHMIRNFAGVLMTIGAGEEEVSWASKVLAAKDRTKGGITGPPEGLYF 242 Query: 242 DSVEYS 247 EY Sbjct: 243 VDAEYP 248 >gi|299148560|ref|ZP_07041622.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_23] gi|298513321|gb|EFI37208.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_23] Length = 267 Score = 274 bits (701), Expect = 9e-72, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V HARF A R+Y Y + T + Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDTHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 237 FLVNVEYP 244 >gi|325288607|ref|YP_004264788.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM 8271] gi|324964008|gb|ADY54787.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM 8271] Length = 267 Score = 274 bits (701), Expect = 9e-72, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M C+ + Y+G+ Y G+Q Q +G +IQG +EKA + E + + AGRTD GVHA Sbjct: 1 MNNICLRLAYDGTQYHGFQSQPEEHGKTIQGELEKAWKRLAQEEIKIVTAGRTDKGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F + A+N+ L + I IL +V +F+AR SA + Y Y+I Sbjct: 61 GQVINFKSAARIPQDKIPIAMNSVL--PEEIRILEAKLVGAEFNARTSAYWKRYDYKIEN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ + + P LD MR AA + G+HDF TF + A S +RT+ H V Sbjct: 119 KRTADVFTRLYSLHEPVPLDLNKMRQAAARIEGKHDFKTFSAAGSNAKSFVRTVYHCKVQ 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 S I + + FL+ +R G+L VG GK D+ L++++R G P G Sbjct: 179 SSSGYITVTCIGNGFLYNMVRIITGTLLYVGKGKIVPEDMPGILKSRNRALAGKTVSPAG 238 Query: 239 LYFDSVEYS 247 L ++Y Sbjct: 239 LVLRYIDYD 247 >gi|159044486|ref|YP_001533280.1| tRNA pseudouridine synthase A [Dinoroseobacter shibae DFL 12] gi|189030132|sp|A8LNZ7|TRUA_DINSH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157912246|gb|ABV93679.1| pseudouridine synthase A [Dinoroseobacter shibae DFL 12] Length = 257 Score = 274 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 115/251 (45%), Positives = 165/251 (65%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G+ + GWQRQ+ S+QG++E A+ + + + AGRTD+GVHAL Q Sbjct: 1 MPRFALKIEYDGAPFAGWQRQREQPSVQGAVEAALRGLQPDHAGIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALNA+L+ + ++L + V + FHARFSA+ RSYL+R++ R+ Sbjct: 61 VAHVDLARDWDPFRLSEALNAHLRPAPV-AVLAAARVGEDFHARFSALERSYLFRLLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W + LD E MR A++L+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGLVWRVMNPLDVEAMREGAKYLIGKHDFTTFRSTMCQAASPVKTLDEITIEES 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ P Sbjct: 180 PRDAGTEFRFHLRARSFLHNQVRSIVGTLERVGAGAWDPADVKTALEARDRAACGPVCAP 239 Query: 237 EGLYFDSVEYS 247 +GLY +V Y Sbjct: 240 QGLYLRAVRYP 250 >gi|282906560|ref|ZP_06314408.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Btn1260] gi|282329459|gb|EFB58980.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Btn1260] Length = 264 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLHQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|329730365|gb|EGG66755.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21193] Length = 267 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|238920608|ref|YP_002934123.1| tRNA pseudouridine synthase A, [Edwardsiella ictaluri 93-146] gi|238870177|gb|ACR69888.1| tRNA pseudouridine synthase A, putative [Edwardsiella ictaluri 93-146] Length = 275 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 125/244 (51%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV H Sbjct: 17 LALGIEYDGSRYAGWQRQREVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVH 76 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +NA+L +++ + V FHARFSA R Y Y I + Sbjct: 77 FTTHALRQEGAWTMGVNAHL--PKDVAVRWVKDVSPDFHARFSATARRYRYVIYNHRYRP 134 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + LD E M A Q L+G +DF+ FR+ CQ+ +P R + H V+ +G+ Sbjct: 135 AVLQSGVTHFYLPLDAERMARAGQALLGENDFSAFRAAQCQSRTPWRNVSHLRVDRYGSY 194 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A +F+H +R+ VGSL VG G + + L +DR A GLY + Sbjct: 195 VVVDIKANAFVHHMVRNIVGSLLEVGCGNQPESWIAGLLAGRDRTLAAATAKAAGLYLVA 254 Query: 244 VEYS 247 V+Y Sbjct: 255 VDYP 258 >gi|293380407|ref|ZP_06626478.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 214-1] gi|290923090|gb|EFE00022.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 214-1] Length = 262 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSMM--PTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ P LD E M+IAAQ L+G+HDFT+F + Q +RTI + + Sbjct: 121 HFVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGQIEDKVRTIYYVKITE 180 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 DKKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|92113385|ref|YP_573313.1| tRNA pseudouridine synthase A [Chromohalobacter salexigens DSM 3043] gi|91796475|gb|ABE58614.1| tRNA pseudouridine synthase A [Chromohalobacter salexigens DSM 3043] Length = 290 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 94/242 (38%), Positives = 132/242 (54%), Gaps = 2/242 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M +EY+GS Y GWQR K+ +S+QG++E A+ + V V +GRTDSGVHA RQV HFD Sbjct: 1 MGVEYDGSAYCGWQRLKHAASVQGTLEAALSRIANAPVQVLCSGRTDSGVHATRQVVHFD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 NA L +++ + V FHAR SA+ R Y Y I+ + + L Sbjct: 61 APVTRTQKAWLFGANANL--PRDVAVRWVVPVADDFHARLSALARRYRYVILNQPSRPVL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E+ A + LD E M AAQ LVG HDF++FR+ CQ+ S R + +V +G L+ Sbjct: 119 ERANATWCREPLDAERMHAAAQALVGEHDFSSFRAAGCQSKSRWRHVHFIEVRRYGQLVV 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A +FLH IR+ G+L VG G ++ L + L +DR + AP GL+F Sbjct: 179 IDIQANAFLHHMIRNIAGALVAVGRGDHSTGYLGELLALRDRTQGNVTAPGCGLHFVDAL 238 Query: 246 YS 247 Y Sbjct: 239 YD 240 >gi|50083718|ref|YP_045228.1| tRNA pseudouridine synthase A [Acinetobacter sp. ADP1] gi|51316594|sp|Q6FEV2|TRUA_ACIAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49529694|emb|CAG67406.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ADP1] Length = 271 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 129/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G Y GWQ +Q SIQ +IEK + + E +++HGAGRTD+GVHA Sbjct: 2 MQRYAVGIEFCGIRYRGWQTQQAGVPSIQETIEKVLSKIADEPIILHGAGRTDAGVHATN 61 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + ++ FHARF A R Y Y + Sbjct: 62 MVAHFDTNAIRPQRGWLMGANSQL--PKDISIQWIKEMNTDFHARFKATARRYRYVVYNT 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + ++LD + M +AA+ G H+F TFR+ CQ+S P+R + H + Sbjct: 120 LNRPALLHKQVTHVYQTLDVDKMMLAARKFEGTHNFETFRAASCQSSQPVRHLSHCRLTR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ AQDRK G AP +GL Sbjct: 180 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGCYEIEHIDTMFAAQDRKAAGVTAPADGL 239 Query: 240 YFDSVEYS 247 YF Y Sbjct: 240 YFIQAYYP 247 >gi|223933386|ref|ZP_03625373.1| tRNA pseudouridine synthase A [Streptococcus suis 89/1591] gi|330832153|ref|YP_004400978.1| tRNA pseudouridine synthase A [Streptococcus suis ST3] gi|223897953|gb|EEF64327.1| tRNA pseudouridine synthase A [Streptococcus suis 89/1591] gi|329306376|gb|AEB80792.1| tRNA pseudouridine synthase A [Streptococcus suis ST3] Length = 249 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQTHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++ + V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTPEDIDVVQVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTIKAASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQRRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|270285538|ref|ZP_06194932.1| tRNA pseudouridine synthase A [Chlamydia muridarum Nigg] gi|270289549|ref|ZP_06195851.1| tRNA pseudouridine synthase A [Chlamydia muridarum Weiss] gi|301336935|ref|ZP_07225137.1| tRNA pseudouridine synthase A [Chlamydia muridarum MopnTet14] gi|13431951|sp|Q9PJT0|TRUA_CHLMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 267 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 131/251 (52%), Gaps = 6/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + ++ + V +GRTD+GVHA Sbjct: 1 MTKKIILRIAYQGTAYSGWQYQPNALSIQEVLETLLQKISRTRISVIASGRTDAGVHAQG 60 Query: 60 QVAHFDLVREW---VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAHF P + K LNA L I I ++ ++ FH+RFSAI + Y Y + Sbjct: 61 QVAHFCCPDHPHFSDPGQIKKMLNALL--PHDIVIRDVIATNEDFHSRFSAITKEYHYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L E+MR AA++LVG HDF +F ++ + SS +RT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRHKLCLESMREAAKYLVGTHDFASFANLGREYSSTVRTLYALD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +L+ + FL+ +R+ VG+L +G GK+ L + L+ +DRK+ P APP Sbjct: 179 LLEQEHLVTVICKGNGFLYKMVRNIVGALLDIGKGKYPPEHLLEMLEKKDRKKGPPSAPP 238 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 239 YGLSLHHVCYP 249 >gi|327182857|gb|AEA31304.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1118] Length = 264 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILALNSMM--PTDIVFTDCQIVDENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 ++ LD + M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSFAASGGQIEDKVRTIYYVNIRK 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N N I + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 NEEENEIIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|169797325|ref|YP_001715118.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AYE] gi|213155861|ref|YP_002317906.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB0057] gi|215484762|ref|YP_002326997.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB307-0294] gi|301346428|ref|ZP_07227169.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB056] gi|301511754|ref|ZP_07236991.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB058] gi|301594287|ref|ZP_07239295.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB059] gi|332852976|ref|ZP_08434486.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013150] gi|332866410|ref|ZP_08436994.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013113] gi|226708639|sp|B7H0S9|TRUA_ACIB3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708640|sp|B7I4E8|TRUA_ACIB5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688022|sp|B0V4L0|TRUA_ACIBY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169150252|emb|CAM88148.1| tRNA-pseudouridine synthase I [Acinetobacter baumannii AYE] gi|213055021|gb|ACJ39923.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB0057] gi|213988479|gb|ACJ58778.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB307-0294] gi|332728912|gb|EGJ60267.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013150] gi|332734636|gb|EGJ65742.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013113] Length = 265 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTTAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCYYP 246 >gi|222150476|ref|YP_002559629.1| tRNA pseudouridine synthase A [Macrococcus caseolyticus JCSC5402] gi|222119598|dbj|BAH16933.1| tRNA pseudouridine synthase A [Macrococcus caseolyticus JCSC5402] Length = 273 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 2/245 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++YNG + G+Q Q G ++Q +E+ + + + V +H + RTD GVHA Q Sbjct: 1 MERILLQLQYNGVNFQGFQIQNEGRTVQYELERILKRMHKQFVRIHPSSRTDKGVHARMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD A N+ L D I I ++ + + FH+R+ I ++Y Y++ + Sbjct: 61 YVHFDTPLSIPESKWQHAFNSAL--PDDIYITQVTKISEHFHSRYDCIGKAYRYKVYVAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + G+ I LD + M AAQH +G HDFT+F S + + RT+ F+V Sbjct: 119 HRNVMHSGQITHIKTKLDVKRMNDAAQHFLGTHDFTSFCSAKTEIENKERTLYRFEVTET 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + V+ FL+ +R V L VG G+ + +QAQDR + G AP EGLY Sbjct: 179 AEGYDFYVIGSGFLYNMVRIMVQYLIDVGTGQKDGDSIPAIIQAQDRTKAGKTAPAEGLY 238 Query: 241 FDSVE 245 + + Sbjct: 239 LEKIY 243 >gi|120609904|ref|YP_969582.1| tRNA pseudouridine synthase A [Acidovorax citrulli AAC00-1] gi|166228672|sp|A1TLH0|TRUA_ACIAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120588368|gb|ABM31808.1| tRNA pseudouridine synthase A [Acidovorax citrulli AAC00-1] Length = 278 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 128/264 (48%), Gaps = 20/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNGS Y GWQ Q G+++Q +E A+ V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGSAYRGWQSQPGGATVQDRLEAALARFATHEVSTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P + N +L I++ V + FH+R SA R Y Y ++ Sbjct: 61 VHFDTPLERTPFSWVRGTNTFL--PPDIAVQWARPVPEAFHSRASATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + +LD + MR AA+HL+G HDFT+FR+ CQA SP++T+ ++ G Sbjct: 119 RPSVEAGRVGWVFHALDGDAMRAAARHLLGEHDFTSFRASACQAKSPVKTLRRIEITQRG 178 Query: 182 N------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FLH +R+ +G L VG G+ + + LQ Sbjct: 179 TGGVPAGQAPGDRGDVPTCYWRFEFEGNAFLHHMVRNIMGCLVAVGQGQHPADWMHAVLQ 238 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 A+ R P P+GLYF Y Sbjct: 239 ARSRDAAAPTFSPDGLYFLGPLYD 262 >gi|300776045|ref|ZP_07085904.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910] gi|300505178|gb|EFK36317.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910] Length = 250 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + YNG YFG+Q Q + S+Q +EKA+ + E + GAGRTD+GVHA + A Sbjct: 9 RYFIEFSYNGKNYFGYQIQPDAISVQEELEKALSTILREEIKTTGAGRTDTGVHAKKIFA 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD +E L + LN++L ISI + V FHARF A R+Y Y I + P Sbjct: 69 HFDTEKELD-DQLPRRLNSFL--PPDISIKRIFPVKDDFHARFDATYRTYEYYISLEKNP 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E +SLD + M A + L DFT+F + + I I + G Sbjct: 126 FTQESAWQHW-KRSLDVDAMNEACKILFEYEDFTSFAKLKTDNKTNICKIYKAEWEQNGA 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ V A FL +R+ VG++ +G GK DL K ++ ++R G AP GLY Sbjct: 185 ELKFTVSANRFLRNMVRAIVGTMVEIGTGKLKPEDLRKVIEDKNRNAAGTSAPGHGLYLV 244 Query: 243 SVEYS 247 V Y Sbjct: 245 DVGYE 249 >gi|169634476|ref|YP_001708212.1| tRNA pseudouridine synthase A [Acinetobacter baumannii SDF] gi|260556213|ref|ZP_05828432.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 19606] gi|238688125|sp|B0VLA5|TRUA_ACIBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169153268|emb|CAP02373.1| tRNA-pseudouridine synthase I [Acinetobacter baumannii] gi|260410268|gb|EEX03567.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 19606] Length = 265 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTNAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCYYP 246 >gi|28211488|ref|NP_782432.1| tRNA pseudouridine synthase A [Clostridium tetani E88] gi|42559805|sp|Q893H3|TRUA1_CLOTE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|28203929|gb|AAO36369.1| tRNA pseudouridine synthase A [Clostridium tetani E88] Length = 245 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M MI+EY+G+ Y GWQ+QK + +IQ IE + +TGE + V G GRTD+GVHA Sbjct: 1 MRNLKMILEYDGTRYKGWQKQKKDVLTIQDKIETVLSKMTGEDIQVIGCGRTDAGVHAEN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F ++ + L Y + + I + + ++FHAR++ ++Y+YRI Sbjct: 61 YVANFHTNCDFTVDYMLDYL--YEFLPEDIVVKTMKDTSERFHARYNVKSKTYVYRINNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + K A+ + L+ M+ AA+ L+G HDF +F + + S IR I + ++ Sbjct: 119 KFRSVFNKKYAYHDNEKLNISAMKDAAEFLIGTHDFKSFTRLKSNSKSTIRAIKYINITE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +I I V FL +R G+L VG D+EK L + R + + P +GL Sbjct: 179 NQGIISIEVNGNGFLLNMVRIVAGALLEVGKENIKPIDIEKMLNEKKRADASLILPAKGL 238 Query: 240 YFDSVEY 246 ++Y Sbjct: 239 CLKDIQY 245 >gi|15925209|ref|NP_372743.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50] gi|15927799|ref|NP_375332.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus N315] gi|148268659|ref|YP_001247602.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH9] gi|150394724|ref|YP_001317399.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH1] gi|156980534|ref|YP_001442793.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu3] gi|253316980|ref|ZP_04840193.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253734372|ref|ZP_04868537.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH130] gi|255006999|ref|ZP_05145600.2| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794565|ref|ZP_05643544.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781] gi|258408833|ref|ZP_05681117.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763] gi|258422432|ref|ZP_05685344.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719] gi|258439820|ref|ZP_05690566.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299] gi|258442624|ref|ZP_05691184.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115] gi|258446678|ref|ZP_05694833.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300] gi|258450204|ref|ZP_05698296.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224] gi|258455424|ref|ZP_05703384.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937] gi|269203852|ref|YP_003283121.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED98] gi|282893658|ref|ZP_06301890.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117] gi|282926765|ref|ZP_06334392.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102] gi|295404895|ref|ZP_06814708.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819] gi|296275990|ref|ZP_06858497.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MR1] gi|297243953|ref|ZP_06927843.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796] gi|54039782|sp|P65849|TRUA_STAAN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042087|sp|P65848|TRUA_STAAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166229841|sp|A7X5B5|TRUA_STAA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189029998|sp|A5IV03|TRUA_STAA9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030146|sp|A6U3U4|TRUA_STAA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13702019|dbj|BAB43311.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus N315] gi|14247992|dbj|BAB58381.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50] gi|147741728|gb|ABQ50026.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH9] gi|149947176|gb|ABR53112.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH1] gi|156722669|dbj|BAF79086.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu3] gi|253727689|gb|EES96418.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH130] gi|257788537|gb|EEV26877.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781] gi|257840516|gb|EEV64976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763] gi|257841863|gb|EEV66300.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719] gi|257847596|gb|EEV71598.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299] gi|257851745|gb|EEV75679.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115] gi|257854746|gb|EEV77694.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300] gi|257856296|gb|EEV79205.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224] gi|257862635|gb|EEV85403.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937] gi|262076142|gb|ACY12115.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED98] gi|282591216|gb|EFB96289.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102] gi|282763716|gb|EFC03844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117] gi|283471441|emb|CAQ50652.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ST398] gi|285817881|gb|ADC38368.1| tRNA pseudouridine synthase A [Staphylococcus aureus 04-02981] gi|294969840|gb|EFG45858.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819] gi|297178731|gb|EFH37976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796] gi|312830568|emb|CBX35410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129701|gb|EFT85692.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS03] gi|329723462|gb|EGG59991.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21172] Length = 267 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|332365537|gb|EGJ43297.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1059] Length = 249 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMLVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|326316049|ref|YP_004233721.1| tRNA pseudouridine synthase A [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372885|gb|ADX45154.1| tRNA pseudouridine synthase A [Acidovorax avenae subsp. avenae ATCC 19860] Length = 278 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 87/264 (32%), Positives = 129/264 (48%), Gaps = 20/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNGS Y GWQ Q G+++Q +E A+ V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGSAYRGWQSQPGGATVQDRLEAALARFATHEVSTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +P + N +L I++ V + FH+R SA R Y Y ++ Sbjct: 61 VHFDTPLDRMPFSWVRGTNTFL--PPDIAVQWARPVPEAFHSRASATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + +LD + MR AA+HL+G HDFT+FR+ CQA SP++T+ ++ G Sbjct: 119 RPSVESGRVGWVFHALDGDAMRAAARHLLGEHDFTSFRASACQAKSPVKTLRRIEITQRG 178 Query: 182 N------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FLH +R+ +G L VG G+ + + LQ Sbjct: 179 TGGVPAGQASGDRGDVPTCYWRFEFEGNAFLHHMVRNIMGCLVAVGQGQHPADWMHAVLQ 238 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 A+ R P P+GLYF Y Sbjct: 239 ARSRDAAAPTFSPDGLYFLGPLYD 262 >gi|154502979|ref|ZP_02040039.1| hypothetical protein RUMGNA_00801 [Ruminococcus gnavus ATCC 29149] gi|153796518|gb|EDN78938.1| hypothetical protein RUMGNA_00801 [Ruminococcus gnavus ATCC 29149] Length = 244 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ N +IQG +E+A G V V G+GRTD GVHA Sbjct: 1 MRTYKLTIAYDGSRYQGWQRQSNTDKTIQGLLEQAASEAAGYPVEVQGSGRTDGGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + +N L I ++ + +V FHAR SA+ + Y Y I R Sbjct: 61 QTASVILRGKVQESEFLQNMNRLL--PLDIRVIEMELVKNGFHARLSAVGKCYEYWIDMR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + PK L+ E M+ AA L+GR+DF F + S IRTI V Sbjct: 119 EKPDVFMRKYTYHYPKELNIEAMQRAADDLIGRYDFAAFTDKK-EEKSTIRTIYAIIVEV 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I F++ +R G+L VGDG+ T ++ AL +DR + G LAP GL Sbjct: 178 QGDKLRIEYRGSGFMYHMVRILTGTLLEVGDGRRTPESVKAALAGRDRADAGFLAPARGL 237 Query: 240 YFDSVEY 246 V Y Sbjct: 238 TLKEVYY 244 >gi|315037561|ref|YP_004031129.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112] gi|325956034|ref|YP_004286644.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC] gi|312275694|gb|ADQ58334.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112] gi|325332599|gb|ADZ06507.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC] Length = 264 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILALNSMM--PTDIVFTDCQIVDENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 ++ LD + M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSFAASGGQIEDKVRTIYYVNIRK 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N N I + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 NEEENEIIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|238685503|sp|A3M1T4|TRUA_ACIBT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193076245|gb|ABO10878.2| tRNA-pseudouridine synthase I [Acinetobacter baumannii ATCC 17978] Length = 265 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTNAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCYYP 246 >gi|293369414|ref|ZP_06615999.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CMC 3f] gi|292635581|gb|EFF54088.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CMC 3f] Length = 267 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V HARF A R+Y Y + T + Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDTHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 237 FLVNVEYP 244 >gi|119383286|ref|YP_914342.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222] gi|166228744|sp|A1AZF2|TRUA_PARDP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119373053|gb|ABL68646.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222] Length = 261 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 119/254 (46%), Positives = 158/254 (62%), Gaps = 8/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 M R+ ++IEY+GS + GWQ Q S+Q +IE A+ + + AGRTD+GVHA Sbjct: 1 MPRFALLIEYDGSPFAGWQAQAERPSVQSTIEAALGRLDPGFAAGARIAAAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL R+W P L +ALN +LK ++IL + V FHARFSA R YL+R++ Sbjct: 61 TGQVAHADLARDWDPFRLSEALNWHLK-PAPVAILAAARVADDFHARFSAHERRYLFRLV 119 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+APL ++GRAW +P LD MR A HL+GRHDFTTFRS CQA+SP++T+D + Sbjct: 120 ARRAPLTHDRGRAWQVPHRLDLAAMRAGAAHLLGRHDFTTFRSTMCQANSPVKTLDELTI 179 Query: 178 NS----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G + ARSFLH Q+RS VG+L+ VG G W + +AL A DR CGP+ Sbjct: 180 DEAEIPQGREYRFFLRARSFLHNQVRSIVGTLERVGAGAWPPGRVAEALAACDRAACGPV 239 Query: 234 APPEGLYFDSVEYS 247 PP+GLY V Y Sbjct: 240 CPPQGLYLTGVGYE 253 >gi|295694868|ref|YP_003588106.1| tRNA pseudouridine synthase A [Bacillus tusciae DSM 2912] gi|295410470|gb|ADG04962.1| tRNA pseudouridine synthase A [Bacillus tusciae DSM 2912] Length = 277 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+G+ Y G+QRQ ++QG +E A+ + G V + GAGRTD+GVHA QV Sbjct: 1 MYVKAKVGYDGTDYHGFQRQPGLRTVQGVLEGALGELAGREVSIVGAGRTDAGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F+ ++ + + + NL + FH RFSA+ + Y Y + Sbjct: 61 IAFEWPGPIP--WQRLERVLLRRLPEDLVVSNLEPAPESFHPRFSAVGKCYRYTLDQGVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + W +P +D +MR AA G HD+T+F + + +RT+ + Sbjct: 119 PSVFLRRYTWHVPTQMDLGSMRRAALAAAGTHDYTSFCAASTPVQNKVRTVYAIRLAEEP 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R VG+L VG GK + + L A+DR+ G AP +GL Sbjct: 179 PFVHLYVFGNGFLYQMVRILVGTLVEVGIGKRSVESISGILAARDRRAAGVTAPAKGLTL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 WDVYYE 244 >gi|229552739|ref|ZP_04441464.1| tRNA-pseudouridine synthase I [Lactobacillus rhamnosus LMS2-1] gi|229313945|gb|EEN79918.1| tRNA-pseudouridine synthase I [Lactobacillus rhamnosus LMS2-1] Length = 242 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 119/244 (48%), Gaps = 5/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHF 64 M + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL QV F Sbjct: 1 MTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALGQVISF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D + +A+N+ + I IL IV FHAR+SA + Y YR+ Sbjct: 61 DYPGNIPAESMLRAMNSLM--PLDIEILKAEIVAADFHARYSAKGKRYRYRVARGYYTNP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--N 182 + P LD + + +A + LVG HDFT+F + +RTI V N Sbjct: 119 FNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEEDPATN 178 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + FL+ +R V + +G+G+ D ++ + +DR++ AP GLY Sbjct: 179 ELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPASGLYLK 238 Query: 243 SVEY 246 V Y Sbjct: 239 EVYY 242 >gi|313893105|ref|ZP_07826682.1| tRNA pseudouridine synthase A [Veillonella sp. oral taxon 158 str. F0412] gi|313442458|gb|EFR60873.1| tRNA pseudouridine synthase A [Veillonella sp. oral taxon 158 str. F0412] Length = 261 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q N ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIRIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSKICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I +L + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGAIPAENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L K W + K L+ E M+ A L+G HDFTT + + + P++TI V Sbjct: 119 QLIANPLTKRYHWHVKKPLNIELMQAAGNELLGTHDFTTLKGTNSTPADPVKTIMGIQVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +G Sbjct: 179 GEGPHVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQG 238 Query: 239 LYFDSVEY 246 L + + + Sbjct: 239 LCLEEIFF 246 >gi|239814424|ref|YP_002943334.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110] gi|259550491|sp|C5CSH0|TRUA_VARPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239801001|gb|ACS18068.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110] Length = 270 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 127/250 (50%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I YNG Y GWQ Q++G ++Q +E A+ + + AGRTD+GVHAL QV Sbjct: 1 MRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAAQPIGTLCAGRTDAGVHALMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P + N +L D I++ V +FH R SA+ R YLY + Sbjct: 61 VHFDTTVEREPFSWMRGTNRFL--PDDIAVQWAQPVPDEFHCRASALARRYLYVLSQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +L+ GR LD + MR AA LVG+HDF++FR+ CQA SP++ + ++ G Sbjct: 119 RPSLDSGRVGWSMHPLDGDAMRAAAALLVGKHDFSSFRASACQARSPVKDLRRIEITRVG 178 Query: 182 N----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + A +FLH IR+ +G L +G G + + L+A+ RK P Sbjct: 179 SGDRCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEWITEVLEARSRKVAAPTFSAN 238 Query: 238 GLYFDSVEYS 247 GLYF Y Sbjct: 239 GLYFLGPLYD 248 >gi|315649669|ref|ZP_07902753.1| tRNA pseudouridine synthase A [Paenibacillus vortex V453] gi|315274857|gb|EFU38233.1| tRNA pseudouridine synthase A [Paenibacillus vortex V453] Length = 266 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 123/257 (47%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ Y G+Q Q G +IQ +E AI ++GE + + +GRTD+GVHA Q Sbjct: 1 MRNLLMRVSYDGTDYNGFQTQPGGHTIQDYLEDAIHRLSGEQLKIIASGRTDAGVHARAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALN +L + I + + V +FH+R +A R++Y Y I Q Sbjct: 61 VFNFYTASPIPLERWCMALNTWL--PEDIVVSDAMEVPMEFHSRHAAKRKTYRYTINANQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + LD M +HL+G +D+TTF S SS +RTI Sbjct: 119 HPDLFNRRYQIHHYGQLDIPAMEQGLRHLIGTYDYTTFASRKSTKSSHVRTIFDAWFERD 178 Query: 181 GNL----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 ++ I + FL +R +G+L VG+GK D++ L+A++R Sbjct: 179 TSMCRPGTRDQGVIHTYLSGNGFLQHMVRIIMGTLIEVGEGKRHPDDMKIILEAKNRAAA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 GP A +GL VEY Sbjct: 239 GPTAMGKGLMLWEVEYD 255 >gi|58336660|ref|YP_193245.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus NCFM] gi|227903218|ref|ZP_04021023.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus ATCC 4796] gi|62901152|sp|Q5FM60|TRUA_LACAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58253977|gb|AAV42214.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus NCFM] gi|227869023|gb|EEJ76444.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus ATCC 4796] Length = 262 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ ++V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRIIVQGSGRTDAGVHAIGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKEIPANRMILALNSMM--PTDIVFTDCQIVDEDFHARYSIKGKWYRYRLSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 ++ P LD E MRIAAQ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 YFVNPFKRFYTGHFPYQLDLEKMRIAAQDLLGKHDFTSFAASGGQIKDKVRTIYYINITK 180 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N I + FL+ +R V +L +G+ + DL + + A+DR+E A Sbjct: 181 DEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNERRPLHDLRRVIAAKDRQEVRQTAQGS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|237802891|ref|YP_002888085.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/Jali20/OT] gi|237804813|ref|YP_002888967.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/TZ1A828/OT] gi|255311275|ref|ZP_05353845.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 6276] gi|255317577|ref|ZP_05358823.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 6276s] gi|231273113|emb|CAX10026.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/TZ1A828/OT] gi|231274125|emb|CAX10919.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/Jali20/OT] Length = 267 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 128/251 (50%), Gaps = 6/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF P + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 239 YGLSLHHVCYP 249 >gi|108758714|ref|YP_633269.1| tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] gi|30913405|sp|Q93NE2|TRUA_MYXXA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14517923|gb|AAK64428.1|AF377337_4 pseudouridine synthase TruA [Myxococcus xanthus] gi|108462594|gb|ABF87779.1| tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] Length = 265 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY G+ Y GWQ Q NG SIQ +E + + G V V AGRTD+GVHA Q Sbjct: 1 MPRLKLTLEYEGTRYVGWQVQPNGPSIQSVLESGLERLLGARVSVASAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD R LN L +++++ V + F R + + Y YR+ R+ Sbjct: 61 VACFDSPRVLPMKAYVMGLNGLL--PPDVAVVDAVEVAEDFDPRRWSRGKRYRYRVSNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 L + W + LD E MR AA HL+GRHDF+ FR+ CQA +R I V + Sbjct: 119 TRSPLRRMTHWEVFAPLDVEAMRQAAAHLLGRHDFSAFRAADCQAKHAVREIRSLAVEGT 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + V +FL +R+ G+L VG G+ ++ + + L +Q+RK GP APP+GL Sbjct: 179 SGDAVSFVVEGTAFLKHMVRNLAGTLVEVGKGRRPASWVAEVLASQERKRAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 VLEEVFY 245 >gi|323463783|gb|ADX75936.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius ED99] Length = 267 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I YNG+ + G+Q Q G +IQG EK + + + V +H + RTD GVHA Q Sbjct: 1 MQRVLVKISYNGAQFLGFQIQNQGRTIQGYFEKILKRMHQQHVRIHPSSRTDRGVHAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P A+N+ L D I + ++S +D+ FH R+ + + Y Y I + Sbjct: 61 YFHFDTHLNITPERWQHAMNSAL--PDDIYVHDVSFIDRDFHCRYDCVGKRYRYSIYQAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PK+LD E M+ AAQ+ VG H+FTTF S + S RTI + Sbjct: 119 HRNPFWSQLKTFEPKALDIEAMQRAAQYFVGTHNFTTFCSQKTEVESKERTIYESRIEQT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I+ + FL+ +R + L VG GK ++ D+ L QDR AP EGLY Sbjct: 179 ADGIDFVITGSGFLYNMVRVIMAYLLEVGKGKRSADDVSNLLAQQDRNLVPHTAPAEGLY 238 Query: 241 FDSVE 245 + + Sbjct: 239 LEKIY 243 >gi|76789199|ref|YP_328285.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/HAR-13] gi|123606852|sp|Q3KLN5|TRUA_CHLTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76167729|gb|AAX50737.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/HAR-13] Length = 267 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 128/251 (50%), Gaps = 6/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF P + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIHDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 239 YGLSLHHVCYP 249 >gi|295692190|ref|YP_003600800.1| tRNA pseudouridine synthase a [Lactobacillus crispatus ST1] gi|295030296|emb|CBL49775.1| tRNA pseudouridine synthase A [Lactobacillus crispatus ST1] Length = 262 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 134/250 (53%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + A+N+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSMM--PTDIIFDDCQIVDENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 ++ P LD E M++AAQ L+G+HDFT+F + Q + +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSFAASGGQIENKVRTIYYVNITK 180 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 DEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQTAHAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|255264700|ref|ZP_05344042.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62] gi|255107035|gb|EET49709.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62] Length = 257 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 117/251 (46%), Positives = 162/251 (64%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQKDQPSVQGAIEAALAKLEPRAHTIAAAGRTDAGVHGLAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W L +ALN +LK ++I++ +IV+ +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLERGWQAFRLSEALNYHLK-PAPVAIVDCAIVEGDWHARFSAVERRYLFRLVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + +GR W + LD M+ AA HLVG HDFTTFRS CQ++SP++T+D D++ Sbjct: 120 ASMTHLRGRVWHVQNPLDVAAMQAAAAHLVGLHDFTTFRSSICQSASPVKTLDRLDISEH 179 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G V ARSFLH Q+RSFVG+L+ VG G W + AL+A +R CGP++PP Sbjct: 180 ETNAGVEYRFDVRARSFLHNQVRSFVGTLERVGAGSWDPDRVRVALEACERSTCGPVSPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLAGVGYP 250 >gi|323440101|gb|EGA97816.1| tRNA pseudouridine synthase A [Staphylococcus aureus O11] gi|323442775|gb|EGB00401.1| tRNA pseudouridine synthase A [Staphylococcus aureus O46] Length = 267 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M+ AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMKRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEILKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHDVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|327468298|gb|EGF13783.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK330] Length = 249 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQLHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V +FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDEFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIRYE 248 >gi|170017912|ref|YP_001728831.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20] gi|238688937|sp|B1MVY3|TRUA_LEUCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169804769|gb|ACA83387.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20] Length = 260 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 128/256 (50%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIVV---VHGAGRTD 52 M RY I+ Y+GS +FG+Q Q ++QG + KA+ + + V V GA RTD Sbjct: 1 MTRYKAIVAYDGSNFFGFQVQTKSGVEVQRTVQGELNKAVNQMAKQPVTPIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + PV + K LN L I I ++ V FHARFS + Y Sbjct: 61 TGVHAFGQVVHFDLPFDINPVGVSKGLNTLL--PRDILIKAVTKVSDDFHARFSTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T ++ LD ++ A L+G HDF +F + Q +S +RTI Sbjct: 119 FYRVSTTAFTDPFKRHYTGHFHWHLDTSRIQEALPDLIGEHDFASFAASGNQTASTVRTI 178 Query: 173 DHFDVNSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + + + +FL+ QIR VG L +G+G+ D+++ + +DR++ Sbjct: 179 TSAQLIEKPDEQELVFVFEGNAFLYNQIRIMVGVLLEIGNGRREIHDIQRLIAVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEY 246 AP GLY D ++Y Sbjct: 239 RFTAPASGLYLDEIDY 254 >gi|313890306|ref|ZP_07823938.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus SPIN 20026] gi|313121292|gb|EFR44399.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus SPIN 20026] Length = 249 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 MIRY II Y+GS + G+QRQ N +IQ IEK + + G+ + + GAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGSQFSGFQRQTNARTIQEEIEKTLMRLNKGKTITIQGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V FHAR+S ++Y + + Sbjct: 61 QVIHFDLAERRDLEKLRFALDT--QTPEDIDVISVEEVSNDFHARYSKHLKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P LD +++A + LVG HDFT F + + +RT+ D N Sbjct: 119 RPKNPMMRQYATHYPYPLDFSLIKLAIKDLVGTHDFTGFTAAGTSVENKVRTLYQADCNF 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S + FL+ Q+R+ VG+L +G+ + + L+ ++R+ GP Sbjct: 179 DSHRQFLIFTFTGNGFLYKQVRNMVGTLLKIGNQRMPVEQVRIILEQKNRQLAGPTIAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|184156753|ref|YP_001845092.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ACICU] gi|332873165|ref|ZP_08441122.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6014059] gi|238691030|sp|B2I367|TRUA_ACIBC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|183208347|gb|ACC55745.1| Pseudouridylate synthase [Acinetobacter baumannii ACICU] gi|322506645|gb|ADX02099.1| truA [Acinetobacter baumannii 1656-2] gi|323516520|gb|ADX90901.1| tRNA pseudouridine synthase A [Acinetobacter baumannii TCDC-AB0715] gi|332738677|gb|EGJ69547.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6014059] Length = 265 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 129/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIELVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTNAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCYYP 246 >gi|296435991|gb|ADH18165.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9768] gi|296437852|gb|ADH20013.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11074] gi|297140352|gb|ADH97110.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9301] Length = 267 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 6/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF P + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P+ + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPVPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 239 YGLSLHHVCYP 249 >gi|116511297|ref|YP_808513.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris SK11] gi|123320604|sp|Q031N1|TRUA_LACLS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116106951|gb|ABJ72091.1| Pseudouridylate synthase [Lactococcus lactis subsp. cremoris SK11] Length = 253 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL + L L+ + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDLNGKARDLERLRFGLDT--QTPADIAVKKVELVPDDWHARYQKHEKTYEYYLEN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L+ E M+ A LVG+HDFT F + +RTI ++ Sbjct: 119 SVTRSPFHRHSKAYFRYPLNFELMQGAMAKLVGQHDFTGFTASGSSVDDKVRTIYQAEII 178 Query: 179 S-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG++ +G+ + + ++K L +++R GP A PE Sbjct: 179 QLDKENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLKEVKYE 248 >gi|319893169|ref|YP_004150044.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius HKU10-03] gi|317162865|gb|ADV06408.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius HKU10-03] Length = 267 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I YNG+ + G+Q Q G +IQG EK + + + V +H + RTD GVHA Q Sbjct: 1 MQRVLVKISYNGAQFLGFQIQNQGRTIQGYFEKILKRMHQQHVRIHPSSRTDRGVHAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P A+N+ L D I + ++S +D+ FH R+ + + Y Y I + Sbjct: 61 YFHFDTHLNITPERWQHAMNSAL--PDDIYVHDVSFIDRDFHCRYDCVGKRYRYSIYQAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PK+LD E M+ AAQ+ VG H+FTTF S + S RTI V Sbjct: 119 HRNPFWSQLKTFEPKALDIEAMQRAAQYFVGTHNFTTFCSQKTEVESKERTIYESRVEQT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I+ + FL+ +R + L VG G+ ++ D+ L QDR AP EGLY Sbjct: 179 ADGIDFVITGSGFLYNMVRVIMAYLLEVGKGRRSADDVPNLLAQQDRNLVPHTAPAEGLY 238 Query: 241 FDSVE 245 + + Sbjct: 239 LEKIY 243 >gi|57650803|ref|YP_187018.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus COL] gi|87160970|ref|YP_494808.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196131|ref|YP_500948.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222333|ref|YP_001333155.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. Newman] gi|161510423|ref|YP_001576082.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140179|ref|ZP_03564672.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258450785|ref|ZP_05698844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5948] gi|262048488|ref|ZP_06021372.1| tRNA pseudouridine synthase A [Staphylococcus aureus D30] gi|262052013|ref|ZP_06024224.1| tRNA pseudouridine synthase A [Staphylococcus aureus 930918-3] gi|282922088|ref|ZP_06329784.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9765] gi|284025245|ref|ZP_06379643.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 132] gi|294848752|ref|ZP_06789497.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9754] gi|304379403|ref|ZP_07362138.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|62901165|sp|Q5HDY9|TRUA_STAAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123098008|sp|Q2FW37|TRUA_STAA8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123763262|sp|Q2FES0|TRUA_STAA3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|172049003|sp|A6QJ61|TRUA_STAAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030147|sp|A8Z326|TRUA_STAAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57284989|gb|AAW37083.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus COL] gi|87126944|gb|ABD21458.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203689|gb|ABD31499.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375133|dbj|BAF68393.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. Newman] gi|160369232|gb|ABX30203.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861568|gb|EEV84370.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5948] gi|259160068|gb|EEW45101.1| tRNA pseudouridine synthase A [Staphylococcus aureus 930918-3] gi|259163346|gb|EEW47904.1| tRNA pseudouridine synthase A [Staphylococcus aureus D30] gi|269941808|emb|CBI50218.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus TW20] gi|282593556|gb|EFB98549.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9765] gi|294824131|gb|EFG40555.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9754] gi|302752092|gb|ADL66269.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341935|gb|EFM07839.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198251|gb|EFU28582.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS01] gi|320140243|gb|EFW32102.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA131] gi|320143513|gb|EFW35294.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA177] gi|329314902|gb|AEB89315.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus T0131] gi|329732055|gb|EGG68410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21189] Length = 267 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|270291103|ref|ZP_06197326.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4] gi|304385383|ref|ZP_07367728.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284] gi|270280499|gb|EFA26334.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4] gi|304328590|gb|EFL95811.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284] Length = 248 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 +RY + + Y+G+ + G+Q Q N +++G +++A+ + + + G+GRTD+GVHA Sbjct: 1 MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAVNKIAKNPQPEIPIFGSGRTDAGVHAF 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL E + ALN+ L + + IVD+ FHARF+ + Y YR+ Sbjct: 61 GQVVHFDLPIEMTANNMLHALNSIL--PLDTQVKKVEIVDEDFHARFTTHGKRYQYRMAL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ + E ++ A + L G HDF++F + A + +RTI Sbjct: 119 GEFVDPFKRNYTGHWKFPISIELIQQAIKDLEGTHDFSSFVASGSTAKNHVRTIYEAKAW 178 Query: 179 SFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N I FL+ +R V L +G + D+ + L +DR + AP Sbjct: 179 KDEAQNEIIFEFYGNGFLYNMVRIMVAVLVEIGSKRRPVDDIPRLLAVKDRNQARGTAPA 238 Query: 237 EGLYFDSVEY 246 GLY V+Y Sbjct: 239 SGLYLKEVDY 248 >gi|310644170|ref|YP_003948929.1| tRNA pseudouridine synthase a [Paenibacillus polymyxa SC2] gi|309249121|gb|ADO58688.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa SC2] Length = 261 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 127/257 (49%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M CM + Y+G+ Y G+Q Q +G++IQ +E AI+ +TGE + + G+GRTD+GVHA Q Sbjct: 1 MRNLCMKVNYDGTHYDGFQTQPSGNTIQDCLENAIYSLTGERLKITGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALNA+L I + + V FHAR A R++Y Y I + Sbjct: 61 VFNFHTESPIPIHRWCLALNAWL--PRDIIVTDAREVPLSFHARRMAKRKTYRYSINANR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 P + P +LD M HLVG D+T+F S Q ++ +RTI + Sbjct: 119 FPDIFHRRTQAHHPTNLDVRAMEKGLAHLVGTFDYTSFASRRSQKTNHVRTIYEAYITVD 178 Query: 179 --------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +I + FL +R +G+L VG+GK + D+ L+A++R + Sbjct: 179 HSFSRPGSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSPDDIPSILEAKNRSKA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 GP A L +VEY Sbjct: 239 GPTAVGHALTLWNVEYE 255 >gi|27262396|gb|AAN87479.1| tRNA pseudouridine synthase A [Heliobacillus mobilis] Length = 249 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 6/241 (2%) Query: 8 IEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y+G+ Y G+Q Q+ N +IQ + +AI ++TGE V + AGRTD+GVHA QV F Sbjct: 1 MSYDGTSYHGFQTQEDPTNLPTIQDELMRAIQVLTGEEVKITCAGRTDAGVHARGQVVDF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 A+N+ L I+++ V + FH+RF A+ + Y Y I + Sbjct: 61 LTTSRIPDEKFPLAMNSLL--PKDIAVVKAETVAEDFHSRFGALGKHYRYSIYNHRIHSP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SFGNL 183 ++ + L M+ AA + VG HDF F + +RTI H + + NL Sbjct: 119 FHHRYSYQVYPPLHVAAMQEAAGYFVGTHDFRGFCATGSPVKDFVRTIWHCTLTVTEENL 178 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + V+ FL+ +R G+L VG GK + + + ++DR + G APP+GL Sbjct: 179 LLMDVMGDGFLYNMVRIITGTLVDVGKGKIAPESIPQIIASRDRTQAGTTAPPQGLALLE 238 Query: 244 V 244 V Sbjct: 239 V 239 >gi|89093241|ref|ZP_01166191.1| tRNA-pseudouridine synthase I [Oceanospirillum sp. MED92] gi|89082537|gb|EAR61759.1| tRNA-pseudouridine synthase I [Oceanospirillum sp. MED92] Length = 283 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 136/247 (55%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + +EY+G+ Y GWQ Q+ + SIQ ++EKA+ + V V AGRTD+ V+A Q Sbjct: 23 RYALCVEYSGAEYRGWQIQREGDVPSIQATVEKALSKIANAPVSVICAGRTDARVNATYQ 82 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD N L D I+I V + FHARFSA+ R Y Y I + Sbjct: 83 IIHFDSPVRRDERAWVMGTNTNL--PDDIAIQWAKQVPESFHARFSALERRYRYLIYSNP 140 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ K +D M+ A +HLVG HDFT++R++ CQA SP+RT+ F+V Sbjct: 141 VKPAILPKGITWTYKEMDVARMQEAVKHLVGEHDFTSYRAVGCQAHSPVRTVKEFNVYRE 200 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+ + V A +FLH IR+F G L +G G+ ++ L A+DR++ G APP GLY Sbjct: 201 GRLVILDVRANAFLHHMIRNFAGVLMTIGCGEAEPIWAKEVLDARDRRQGGVTAPPFGLY 260 Query: 241 FDSVEYS 247 F +Y Sbjct: 261 FVDAKYP 267 >gi|78045100|ref|YP_361085.1| tRNA pseudouridine synthase A [Carboxydothermus hydrogenoformans Z-2901] gi|77997215|gb|ABB16114.1| tRNA pseudouridine synthase A [Carboxydothermus hydrogenoformans Z-2901] Length = 246 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 123/246 (50%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + I Y+G+ + G+Q+QKN +IQG +E+ + + E V V GAGRTD+GVHAL Q Sbjct: 5 PNFKLTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILKEPVKVIGAGRTDAGVHALGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + + LN L I +L IV FHAR+SA ++ Y Y + Sbjct: 65 VVNFSAPWKAPVDKIPEILNNTL--PTAIRVLEAEIVPDDFHARYSARKKEYRYYLYYGP 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW +P+ LD E + A ++L+G HDF+ F + +PI+T+ Sbjct: 123 -PSPFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGKNPIKTMFEASYRED 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L VA SFL+ R G+L +G + + L ++K G AP GL+ Sbjct: 182 GFLGYFTFVADSFLYKMARILTGTLVEIGLNGH-PERVREILTTGNKKLAGKTAPAHGLF 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LVKVFY 246 >gi|255507054|ref|ZP_05382693.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D(s)2923] gi|289525508|emb|CBJ14985.1| tRNA pseudouridine synthase A [Chlamydia trachomatis Sweden2] gi|296435064|gb|ADH17242.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/150] gi|296438784|gb|ADH20937.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/11023] Length = 267 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 128/251 (50%), Gaps = 6/251 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTEKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF P + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEYLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 239 YGLSLHHVCYP 249 >gi|294678738|ref|YP_003579353.1| tRNA pseudouridine synthase A [Rhodobacter capsulatus SB 1003] gi|294477558|gb|ADE86946.1| tRNA pseudouridine synthase A [Rhodobacter capsulatus SB 1003] Length = 255 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 111/251 (44%), Positives = 155/251 (61%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ IEY+G + GWQRQ S+QG++E A+ + + AGRTD+GVHA Q Sbjct: 1 MPRFAFRIEYDGGPFAGWQRQAVLPSVQGAVEAALARLEPGEHTIAAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +L+ D ++I+ + V FHARFSA R YL+R+++R+ Sbjct: 61 VAHADLAKDWDPFRLSEALNHHLR-PDPVAIVACARVGDDFHARFSARERRYLFRLVSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP+ ++G+ W + LD MR A L+G HDFTTFR+ CQA SP++T+D + Sbjct: 120 APVVHDRGKVWQVQNPLDVAAMREGAAQLIGLHDFTTFRAAMCQAKSPVKTLDEITIEEI 179 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D+ +AL A+DR CGP+ PP Sbjct: 180 ALPSGREYRFHLRARSFLHNQVRSIVGTLERVGAGAWAPEDVGRALAARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 240 QGLYLCGVGYP 250 >gi|32472096|ref|NP_865090.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1] gi|42559754|sp|Q7TU07|TRUA_RHOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|32397468|emb|CAD72774.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1] Length = 276 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 14/254 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G+ Y GWQ Q SIQ +E+ I + G V V G+GRTD+GVHA+ QVA Sbjct: 12 LTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTDAGVHAIGQVARCV 71 Query: 66 LVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L V L +A+N+ L + I + + ++FH A + Y Y + + Sbjct: 72 LPVWKADTVALQRAINSKL--PNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSRDP 129 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----- 179 + +D M+ AA VGRHDF F+ + S +RTI Sbjct: 130 FANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHSARWIPRVATG 189 Query: 180 ------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 G + FL+ +R+ +G++ VG GK + +++ L ++DRK GP Sbjct: 190 PTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVLASRDRKMAGPT 249 Query: 234 APPEGLYFDSVEYS 247 APP+GL+ V+Y Sbjct: 250 APPQGLFLCRVDYP 263 >gi|29349645|ref|NP_813148.1| tRNA pseudouridine synthase A [Bacteroides thetaiotaomicron VPI-5482] gi|253569984|ref|ZP_04847393.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_6] gi|42559809|sp|Q89ZY4|TRUA_BACTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|29341555|gb|AAO79342.1| tRNA pseudouridine synthase A [Bacteroides thetaiotaomicron VPI-5482] gi|251840365|gb|EES68447.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_6] Length = 269 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 121/250 (48%), Gaps = 7/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q + KA+ V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V HARF A R+Y Y + T + Sbjct: 61 VAHFDHEDVLDTVTVADKLNRLL--PPDISVYRVRQVKPDAHARFDATARTYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + SLD E M AA+ L DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRYRVYGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKM 176 Query: 181 GNL---IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + A FL +R+ VG+L VG GK T K ++ QDR + G AP Sbjct: 177 EGEDTTWVFTIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAPGN 236 Query: 238 GLYFDSVEYS 247 L+ +VEY Sbjct: 237 ALFLVNVEYP 246 >gi|239500845|ref|ZP_04660155.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB900] Length = 265 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ +Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTNAIRQERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQCYYP 246 >gi|302333855|gb|ADL24048.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus JKD6159] Length = 267 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFKGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R + L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLLAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|206889178|ref|YP_002249342.1| tRNA pseudouridine synthase A [Thermodesulfovibrio yellowstonii DSM 11347] gi|238057737|sp|B5YGE4|TRUA_THEYD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206741116|gb|ACI20173.1| tRNA pseudouridine synthase A [Thermodesulfovibrio yellowstonii DSM 11347] Length = 254 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 86/257 (33%), Positives = 126/257 (49%), Gaps = 14/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ M I+Y+G+ YFGWQRQ+ G +IQ +IE+ + + + + GAGRTD+GVHAL Q Sbjct: 1 MVNIKMTIQYDGTNYFGWQRQRKGRTIQATIEECLRKIFQREIKIRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + IL K LN+ L + I I+ L V+ FH + S R+SY+Y + + Sbjct: 61 VATFKAELKMSLDILKKVLNSLL--PNDIKIIKLENVEDSFHPQHSVKRKSYIYYLCFDE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----- 175 + W P LD M A G DFT F + IRT+ F Sbjct: 119 ECSCFIQRYVWHYPWKLDLSLMEEALSLFTGTKDFTAFSGS-TDVKNKIRTVHDFTMQLL 177 Query: 176 ------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 D+ GN I+ R+ A FL +R+ VG + +G GK +++A ++ R Sbjct: 178 TKLCFMDMCLNGNFIKFRIEADGFLRYMVRNLVGCIIEIGKGKLRIESIQEAFESGKRPS 237 Query: 230 CGPLAPPEGLYFDSVEY 246 AP GL+ + V Y Sbjct: 238 TMQTAPSNGLFLEKVIY 254 >gi|256849152|ref|ZP_05554585.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-1A-US] gi|262047168|ref|ZP_06020126.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-3A-US] gi|256713928|gb|EEU28916.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-1A-US] gi|260572413|gb|EEX28975.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-3A-US] Length = 262 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSMM--PTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ P LD E M+IAAQ L+G+HDFT+F + + +RTI + + Sbjct: 121 HFVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGRIEDKVRTIYYVKITE 180 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 DKKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|229830208|ref|ZP_04456277.1| hypothetical protein GCWU000342_02317 [Shuttleworthia satelles DSM 14600] gi|229791506|gb|EEP27620.1| hypothetical protein GCWU000342_02317 [Shuttleworthia satelles DSM 14600] Length = 267 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 122/243 (50%), Gaps = 3/243 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 I Y+G+ Y GWQ Q NG S+Q + + + GE + GA RTD+GVH++ F Sbjct: 2 RATIAYDGTEYCGWQVQPNGISVQEVVNAGLSKLLGEEITCVGASRTDAGVHSMGNEILF 61 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + ALN YL + I S+ FH RFS ++Y YRI+ R+ P+ Sbjct: 62 ETKTRIPADKIAYALNQYL--PEDIVCQGSSLAADDFHPRFSESYKTYEYRILNRRFPMP 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-GNL 183 + + LD + M+ AA L+G HDF++F SIH Q+ + +RTI V+ +L Sbjct: 120 TMRRDSLFYHYDLDEKRMQEAADCLLGEHDFSSFASIHTQSKTRVRTIYQALVSRNADDL 179 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I IR+ FL+ +R G+L VG G + ++ L +R+ GP AP GL Sbjct: 180 ITIRLCGDGFLYNMVRIIAGTLIEVGAGITSPRAFQQILDGMNRELAGPTAPAHGLTQVG 239 Query: 244 VEY 246 + Y Sbjct: 240 LHY 242 >gi|73662003|ref|YP_300784.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761549|sp|Q49ZD7|TRUA_STAS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72494518|dbj|BAE17839.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 267 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q++G +IQ EK + + V +H + RTD GVHA+ Q Sbjct: 1 MRVLVNISYQGSQFLGFQIQQHGRTIQQQFEKILKRMHKHEVRIHPSSRTDRGVHAIEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + ++S V+ FH R+ + +SY Y+I Sbjct: 61 FHFDTELNIPEQQWQYAMNRAL--PDDIYVNDVSFVNDDFHCRYDCVGKSYRYKIYQSAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 G +P+ LD E M +AAQH +G HDFT F S + S IRT+ + Sbjct: 119 KDPFLCGLKTYVPEQLDIEKMNMAAQHFIGTHDFTGFCSQKTEVESKIRTLYESRIEKTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R + L VG GK ++ + L+A+DR + AP EGLY Sbjct: 179 SGFDYIVTGSGFLYNMVRVLIAFLIEVGKGKREPQEVPQLLEARDRNQVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|260171626|ref|ZP_05758038.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] Length = 267 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 119/248 (47%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V H RF A R+Y Y + T + Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDAHVRFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + L+ E M AA L +DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRLYNQLNYERMNEAAHILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 237 FLVNVEYP 244 >gi|226945473|ref|YP_002800546.1| tRNA pseudouridine synthase A [Azotobacter vinelandii DJ] gi|226720400|gb|ACO79571.1| tRNA pseudouridine synthase A [Azotobacter vinelandii DJ] Length = 288 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 123/247 (49%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ +SIQ ++E A+ V G + V AGRTD+ VHA Q Sbjct: 20 RVALGLEYRGARYHGFQRQNPRVASIQAALESALSRVAGGVPLNVVCAGRTDALVHASGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L IS+ + FHARFSA R Y Y I Sbjct: 80 VVHFDTPIERSMHAWTMGANMNL--PADISVAWAREMPAHFHARFSATARRYRYVIYNDP 137 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E MR AA+ LVG HDF+ FR+ CQA SPI+T+ H + Sbjct: 138 IRPAHMAEEVTWNHRPLDIERMRQAARPLVGCHDFSAFRASQCQARSPIKTVHHLQLIRH 197 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + A +FLH +R+ G L +G G+ + L+ + R + G A P GLY Sbjct: 198 GRLIVLDIRANAFLHHMVRNIAGVLMTIGAGERPVEWAREVLEGRQRHKGGVTAHPYGLY 257 Query: 241 FDSVEYS 247 V+Y Sbjct: 258 LVQVDYP 264 >gi|255348836|ref|ZP_05380843.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 70] gi|255503376|ref|ZP_05381766.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 70s] Length = 267 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 6/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF P + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P+ + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPVPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEYLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 239 YGLSLHHVCYP 249 >gi|218440649|ref|YP_002378978.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7424] gi|218173377|gb|ACK72110.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7424] Length = 306 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ N ++Q IE+AI +V G+ V +HGAGRTD+GVHA QV Sbjct: 11 QRVALVIQYLGTHFHGWQRQPNRRTVQEEIERAIAVVIGQPVTLHGAGRTDTGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + P LN+ L D I + + V ++HARFSA R Y Y I T + Sbjct: 71 AHFDQISPIPPGRWASILNSRL--PDDIIVRASNRVCDRWHARFSACWRRYRYTIYTDKQ 128 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P K +W L+ M+ A L+G+H F + + I Sbjct: 129 PNLFIKPFSWHYYHQPLEESLMQSALDPLLGKHHLAAFHRANSARTHSWVEIQAAHCYRI 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A FL+ +R VG L VG+ + + D + Q Q R+E AP +GL Sbjct: 189 GPFVHIEIQANGFLYGMVRLLVGMLIEVGNKQRSIEDFTRIWQNQRREEVKYAAPAKGLC 248 Query: 241 FDSVEYS 247 V Y Sbjct: 249 LLRVGYP 255 >gi|150392315|ref|YP_001322364.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149952177|gb|ABR50705.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 246 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M MI+EY+G+ Y GWQRQ +IQG +E I + G+ + G+GRTD+G HA Sbjct: 1 MRNIRMIVEYDGTKYRGWQRQTATDMTIQGKLEHVISEMVGKKTEIVGSGRTDAGAHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + +N YL I + L +FH+R++ + Y+YRI Sbjct: 61 QVANFHTKSTLSIKEMYQYINQYL--PQDIVVKELKEAGPRFHSRYNVKGKKYVYRIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ +P++L+ E M+ AA LVG +DF F S+ + +RTI+ + Sbjct: 119 STASVFHRKHSYHVPQALNLELMQEAAAKLVGTYDFLPFSSVKKSEKTTVRTIESITIEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +EI +V FL+ +R G+L +G K T +++ R+ G P +GL Sbjct: 179 KDAFVEITIVGDGFLYNMVRIITGTLIEIGSKKKKPTYIDEIFSVGKRQNAGETVPSQGL 238 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 239 FLIEVYYN 246 >gi|295698698|ref|YP_003603353.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA] gi|291157129|gb|ADD79574.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA] Length = 255 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 139/247 (56%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y+GS Y GWQ+QKNG SIQ +E ++ +T E + + GRTDSGVHA QV Sbjct: 4 RVALGIQYDGSRYHGWQKQKNGLDSIQKRLESSLKKLTDEDIKTYCGGRTDSGVHAFGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V+ +N +L IS+L + V +FHARFSAI R Y Y I ++ Sbjct: 64 VHFETYKIRKDVVWVSGVNHFL--PKDISVLWVKPVSHRFHARFSAISRHYRYLIFNKEI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSF 180 A+ + I K LD ++M AAQ L+G +D +F S ++ S R I + +V F Sbjct: 122 RPAIFRSNVLHISKKLDYKDMNKAAQCLLGENDLISFISFDRRSFRSTKRNIRYINVKRF 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + I +VA SF + +R+ VGSL VG GK + ++K + +DR + GP +GLY Sbjct: 182 DSYVIIDIVANSFAYNMVRNIVGSLIEVGLGKKGTEWIKKLIDLKDRTKSGPKVHSKGLY 241 Query: 241 FDSVEYS 247 + YS Sbjct: 242 LMHINYS 248 >gi|323465853|gb|ADX69540.1| tRNA pseudouridine synthase A [Lactobacillus helveticus H10] Length = 262 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 133/250 (53%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ ++ G+ ++V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMSKGKRIIVQGSGRTDAGVHAIGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + ALN+ + I N IV++ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILALNSMM--PTDIIFNNCEIVNENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 ++ +LD M+ AA+ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSFAASGGQIEDKVRTIYYVNIAK 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N I + FL+ +R V +L +G+G+ DL++ + A+DR+E A Sbjct: 181 DEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|161506903|ref|YP_001576857.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DPC 4571] gi|260102386|ref|ZP_05752623.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DSM 20075] gi|172048171|sp|A8YTB0|TRUA_LACH4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160347892|gb|ABX26566.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DPC 4571] gi|260083830|gb|EEW67950.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DSM 20075] Length = 263 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 133/250 (53%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ ++V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRIIVQGSGRTDAGVHAIGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + ALN+ + I N IV++ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILALNSMM--PTDIIFNNCEIVNENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 ++ +LD M+ AA+ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSFAASGGQIEDKVRTIYYVNIAK 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N I + FL+ +R V +L +G+G+ DL++ + A+DR+E A Sbjct: 181 DEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|255693609|ref|ZP_05417284.1| tRNA pseudouridine synthase A [Bacteroides finegoldii DSM 17565] gi|260620585|gb|EEX43456.1| tRNA pseudouridine synthase A [Bacteroides finegoldii DSM 17565] Length = 254 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 119/248 (47%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + A+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMNALSTFLRREIEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V + HARF A R+Y Y + T + Sbjct: 61 VAHFDYDEPLDTESVADKLNRLL--PPDISVYRVCRVRPEAHARFDATARTYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + LD E M AA+ L DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRCRVYSPLDYERMNEAAKVLFEYTDFTSFSKLHTDVKTNICHITHAEWTRE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK + + ++ +DR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLSIEGFRRIIEQKDRCKAGTSAPGQAL 236 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 237 FLVNVEYP 244 >gi|253681679|ref|ZP_04862476.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] gi|253561391|gb|EES90843.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] Length = 245 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+G+ Y GWQ+ + ++IQ IE + + GE V + +GRTD+GVHA Sbjct: 1 MRNIKLTIQYDGTRYKGWQKLGDADNTIQYKIESVLNELLGEEVSLIASGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + K YL I I N+S + FH+R++ ++ Y Y I Sbjct: 61 QIANFKTNSNVTNDTILKHCYKYL--PQDIVITNISDASENFHSRYNVKKKIYTYNIYNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ I ++LD + M+ A++ +G HDF +F ++ + S ++TID Sbjct: 119 PVHDVFTRKYSYHIKETLDIKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTIDSITFKK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N IEI FL+ IR VGSL VG GK T DL+ + +DR AP GL Sbjct: 179 KDNNIEIIFTGNGFLYKMIRILVGSLINVGLGKLTIEDLQNIMNKKDRSIAPETAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 ILTEVKY 245 >gi|163787684|ref|ZP_02182131.1| putative tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] gi|159877572|gb|EDP71629.1| putative tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] Length = 252 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG Y GWQ Q N S+Q +EKA+ + V V GAGRTD+GVHA + Sbjct: 1 MRFFIELSYNGKEYHGWQNQPNAISVQEVLEKALSTILKAEVSVMGAGRTDAGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E+ + LN+YL I++ + V HARF A R+Y Y+I T + Sbjct: 61 AHFDFEKEFEYKDVVYKLNSYL--PKDIAVSTIFEVKPDAHARFEAKSRTYHYKISTSK- 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + A+ + LD E M A + L DF F + + I Sbjct: 118 -NVFDYDFAYQVQLPLDVEAMNTACKILFEYKDFQCFSKSNTDVKTYNCDIKEAFWTQNS 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG++ +G GK DL K + +++R E G P GLY Sbjct: 177 NQLIFTITADRFLRNMVRAIVGTMVNIGLGKLKPEDLHKIIASKNRSEAGFSVPAHGLYL 236 Query: 242 DSVEYS 247 + Y Sbjct: 237 AKIVYP 242 >gi|319792244|ref|YP_004153884.1| tRNA pseudouridine synthase a [Variovorax paradoxus EPS] gi|315594707|gb|ADU35773.1| tRNA pseudouridine synthase A [Variovorax paradoxus EPS] Length = 273 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 127/253 (50%), Gaps = 9/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 +R + I YNG Y GWQ Q++G ++Q +E A+ + + AGRTD+GVHAL Sbjct: 1 MRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAADPSGRIGTLCAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD E P + N +L D I++ V +FH R SA+ R YLY + Sbjct: 61 MQVVHFDTEIEREPFSWMRGTNRFL--PDDIAVQWAQPVPDEFHCRASALARRYLYVLSQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +L+ GR LD + MR AA L+G HDF++FR+ CQA SP++ + ++ Sbjct: 119 SPVRPSLDSGRVGWSMHPLDGDAMRKAAAVLIGTHDFSSFRASACQAKSPVKNLRRIEIT 178 Query: 179 SFGN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 G+ A +FLH IR+ +G L +G G + + L+A+ RK P Sbjct: 179 RVGDGERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEWIAEVLEARSRKVAAPTF 238 Query: 235 PPEGLYFDSVEYS 247 +GLYF Y Sbjct: 239 SADGLYFLGPLYD 251 >gi|229027990|ref|ZP_04184143.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271] gi|228733378|gb|EEL84207.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271] Length = 235 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 3/235 (1%) Query: 14 GYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP 72 + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA QV HFD Sbjct: 2 HFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 61 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 ALN L D I I + ++FHAR+ R+ Y YR++ + + + Sbjct: 62 WQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQ 119 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARS 192 P L+ ++R A + +G HDFT+F S +RTI ++ + + R V Sbjct: 120 YPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIEQDDELIFRFVGNG 179 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL+ +R VG+L VG GK + + L Q+R+ G +AP GLY V Y+ Sbjct: 180 FLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQVNYN 234 >gi|331269740|ref|YP_004396232.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] gi|329126290|gb|AEB76235.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] Length = 245 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+G+ Y GWQ+ N ++IQ +E + + GE + + +GRTD+GVHA Sbjct: 1 MRNIKLTIQYDGTRYKGWQKLGNTDNTIQCKVENVLNELLGEEISLIASGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + K YL I + N++ + FH+R++ ++ Y Y I Sbjct: 61 QIANFKTDSNVSNDTILKHCYKYL--PHDIVVTNVADASENFHSRYNVKKKIYTYNICNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + ++LD + M+ A++ +G HDF +F ++ + S ++TID Sbjct: 119 PVHDVFTRKYSYHVKETLDIKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTIDSISFKK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N IE+ FL+ IR VGSL VG GK T DLE + +DR AP GL Sbjct: 179 KDNNIEVIFTGNGFLYKMIRILVGSLINVGLGKLTIEDLENIMNEKDRSIAPETAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 ILTEVKY 245 >gi|160872663|ref|ZP_02062795.1| tRNA pseudouridine synthase A [Rickettsiella grylli] gi|159121462|gb|EDP46800.1| tRNA pseudouridine synthase A [Rickettsiella grylli] Length = 264 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I Y G Y GWQ Q IQ +E+AI V V + AGRTD GVHAL QV Sbjct: 1 MRIAFGISYQGGAYHGWQSQTKLPCIQTYLERAISRVADHSVRLQCAGRTDKGVHALSQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N+YL I + + +V+ FHARFSA+ R Y Y I R Sbjct: 61 VHFDTDVWRSKKSWLFGSNSYL--PPDIRVNWVQVVEDTFHARFSALARRYRYIIYNRHL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL L+ ++M AAQ+LVG HDF++FR+ CQA+ +R I H V G Sbjct: 119 KSALWNAYTSHCCYPLNEKDMHRAAQYLVGEHDFSSFRAASCQANHALREIQHIQVKRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ L L+G GK ++ ++ L AQ+RK A P GLY Sbjct: 179 DYVIMDIQANAFLHHMVRNISAVLMLIGQGKKSTLWAQEVLFAQNRKMADVTASPTGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 SHVIYP 244 >gi|237715548|ref|ZP_04546029.1| tRNA pseudouridine synthase A [Bacteroides sp. D1] gi|262408556|ref|ZP_06085102.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_22] gi|294643196|ref|ZP_06721024.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CC 2a] gi|294809320|ref|ZP_06768031.1| tRNA pseudouridine synthase A [Bacteroides xylanisolvens SD CC 1b] gi|229444257|gb|EEO50048.1| tRNA pseudouridine synthase A [Bacteroides sp. D1] gi|262353421|gb|EEZ02515.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_22] gi|292641462|gb|EFF59652.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CC 2a] gi|294443478|gb|EFG12234.1| tRNA pseudouridine synthase A [Bacteroides xylanisolvens SD CC 1b] Length = 249 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V+ HARF A R+Y Y + T + Sbjct: 61 VAHFDFDELLDEVSVADKLNRLL--PPDISVYRVCRVNPDAHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + LD M AA+ L DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRVYNQLDYALMNEAARTLFEYTDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 237 FLVNVEYP 244 >gi|253729885|ref|ZP_04864050.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726332|gb|EES95061.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 267 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L+ ++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLELKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|319952056|ref|YP_004163323.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237] gi|319420716|gb|ADV47825.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237] Length = 250 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 126/246 (51%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G Y GWQ+Q N ++QG +E A+ + +++ GAGRTD+GVHA Sbjct: 1 MRYFIRFSYFGKHYHGWQKQPNAVTVQGVLEDALSKLLANEIILMGAGRTDAGVHAKELY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD LNA+L I+IL++ V + HARF+A+ R+Y Y I+ ++ Sbjct: 61 AHFDFEEIPNKENFVFRLNAFL--PKDIAILDVFQVPEDAHARFNAVARTYEYWIVQQKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A LI LD M AAQ + DF F + ++ + + + Sbjct: 119 P--FLTNHAHLIKYPLDINKMNEAAQVFLSHIDFECFSKSNTAVNTFNCDVKYAEWKVTD 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ + A FL +R+ VG+L VG GK ++++ L+++DR + G AP +GLY Sbjct: 177 GILVFTITADRFLRNMVRAIVGTLLEVGLGKIDISNVKAILKSKDRSKAGASAPAKGLYL 236 Query: 242 DSVEYS 247 SV Y Sbjct: 237 TSVLYP 242 >gi|116617361|ref|YP_817732.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272438|sp|Q03ZL3|TRUA_LEUMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116096208|gb|ABJ61359.1| Pseudouridylate synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 255 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTD 52 M RY +I Y+G+ +FG+Q Q ++ ++QG + K I + + V GA RTD Sbjct: 1 MPRYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL P + K +N L + + ++ V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFNIDPEGVRKGMNTLL--PFDVVVNHVEHVSDDFHARFNTHSKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T ++ LD ++ A L+G HDF +F + + ++ IR I Sbjct: 119 IYRVSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASFAASGNETATTIRLI 178 Query: 173 DHFDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 DV+ + I +FL+ QIR VG L +G GK D+ + ++ +DR++ Sbjct: 179 TRADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D ++Y+ Sbjct: 239 RYTAPASGLYLDEIDYN 255 >gi|326559413|gb|EGE09838.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1] gi|326564997|gb|EGE15197.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1] gi|326566051|gb|EGE16211.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1] gi|326572448|gb|EGE22440.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8] gi|326572505|gb|EGE22494.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72] gi|326574101|gb|EGE24049.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1] gi|326576065|gb|EGE25984.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E] Length = 268 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 133/243 (54%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IE+ G+ Y GWQRQ+ +Q IEKA+ + E + + AGRTD+GVHA +AH Sbjct: 6 LAVGIEFIGTRYRGWQRQEEVIGVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F E + N+ L D I++ + + FHARFSAI R Y Y + + Sbjct: 66 FVTHAERSAHSWLRGTNSLL--PDDIALRWVQPMPDDFHARFSAIARRYRYITLNQPYRP 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + LD + M IA+Q +VG HDF++FR+ CQ++ P+RT+ H ++ G+ Sbjct: 124 AILRHQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVTHANLFQHGSY 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A FLH +R+ +G+L VG G+ + + + A++R P A +GLYF + Sbjct: 184 LILDIQADGFLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTLAPPTASADGLYFIN 243 Query: 244 VEY 246 Y Sbjct: 244 AYY 246 >gi|81429336|ref|YP_396337.1| tRNA pseudouridine synthase A [Lactobacillus sakei subsp. sakei 23K] gi|123742201|sp|Q38UV3|TRUA_LACSS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78610979|emb|CAI56031.1| tRNA pseudouridylate synthase A (Pseudouridylate synthase I) [Lactobacillus sakei subsp. sakei 23K] Length = 249 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 128/248 (51%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G+ + G+Q Q ++QG++EKA+ ++ G + V+G+GRTDSGVHA+ Q Sbjct: 3 QRYRVTVAYDGTDFAGFQVQPKQRTVQGTLEKALTKMSKGAYIQVYGSGRTDSGVHAMGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + +ALN+ L + +++ + D FHARFS + + Y+YR+ Sbjct: 63 VVHFDYPSELPAKSMLRALNSLL--PLDMEVVDSQLADDDFHARFSTVGKRYMYRVDLGH 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 ++ P +D E ++ A ++G HD+T+F + +RTI V N Sbjct: 121 YTNPFKRRYTGHYPYPIDVERIKAALSDVMGTHDYTSFAAAGGVIKDKVRTIYEATVVYN 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + FL+ +R V +L +G+G+ D + + +DR++ AP G Sbjct: 181 EAENELIFEFHGNGFLYNMVRILVATLLEIGNGRRDVHDFLRLYEVKDRQQARSTAPASG 240 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 241 LYLKEVYY 248 >gi|116490689|ref|YP_810233.1| pseudouridylate synthase [Oenococcus oeni PSU-1] gi|290890104|ref|ZP_06553187.1| hypothetical protein AWRIB429_0577 [Oenococcus oeni AWRIB429] gi|122277127|sp|Q04G54|TRUA_OENOB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116091414|gb|ABJ56568.1| Pseudouridylate synthase [Oenococcus oeni PSU-1] gi|290480295|gb|EFD88936.1| hypothetical protein AWRIB429_0577 [Oenococcus oeni AWRIB429] Length = 252 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y + I Y+G + G+Q Q ++Q + K + + + V GA RTD+GVHA Sbjct: 1 MQNYKVTISYDGHYFEGFQTQNRPGSRTVQDELIKVVSKMAKTKIKVIGASRTDAGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F + + +N+ L I + + V F+AR S+ R+ YLYR+ T Sbjct: 61 GQVINFIFPFDLNEKAILMGMNSQL--PTDILVKKVEKVPINFNARHSSHRKRYLYRVST 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-- 176 + ++ +LD ++ A L+G HDF++F + Q ++ IRT+ + Sbjct: 119 SKFIDPFKRFYTGHYFWNLDTNKIQEALPDLIGEHDFSSFAASGNQTATTIRTVTKAELK 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N + +FL+ QIR VG L +G+G D+ + ++ +DR++ AP Sbjct: 179 IFPKNNELLFTFEGNAFLYNQIRIMVGVLLEIGNGTRPVHDIIRLIKIKDRQQARFTAPA 238 Query: 237 EGLYFDSVEYS 247 GLY D V Y Sbjct: 239 SGLYLDEVYYE 249 >gi|227431309|ref|ZP_03913362.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352902|gb|EEJ43075.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 255 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTD 52 M RY +I Y+G+ +FG+Q Q ++ ++QG + K I + + V GA RTD Sbjct: 1 MPRYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL P + K +N L + + ++ V FHARF+ + Y Sbjct: 61 TGVHAFGQVIHFDLPFNIDPEGVRKGMNTLL--PFDVVVNHVEHVSDDFHARFNTHSKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T ++ LD ++ A L+G HDF +F + + ++ IR I Sbjct: 119 IYRVSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASFAASGNETATTIRLI 178 Query: 173 DHFDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 DV+ + I +FL+ QIR VG L +G GK D+ + ++ +DR++ Sbjct: 179 TRADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D ++Y+ Sbjct: 239 RYTAPASGLYLDEIDYN 255 >gi|15672468|ref|NP_266642.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis Il1403] gi|281490978|ref|YP_003352958.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis KF147] gi|13878837|sp|Q9CI80|TRUA_LACLA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12723367|gb|AAK04584.1|AE006284_2 tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis Il1403] gi|281374736|gb|ADA64256.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis KF147] gi|326406013|gb|ADZ63084.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis CV56] Length = 253 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQKEIEKILTKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL + L L+ + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDLKGKVRDLERLRFGLDT--QTPADIAVKKVELVPDDWHARYQKHEKTYEYYLEN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ L+ E M+ A LVG HDFT F + +RTI ++ Sbjct: 119 SITRSPFQRHSKAYFRYPLNFERMQEAMSKLVGEHDFTGFTASGSSVDDKVRTIYQAEII 178 Query: 179 S-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG++ +G+ + + ++K L +++R GP A PE Sbjct: 179 RLDEENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRDFAGPTAAPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLKEVKY 247 >gi|89900579|ref|YP_523050.1| tRNA pseudouridine synthase A [Rhodoferax ferrireducens T118] gi|123278889|sp|Q21XI4|TRUA_RHOFD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89345316|gb|ABD69519.1| tRNA pseudouridine synthase A [Rhodoferax ferrireducens T118] Length = 260 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 124/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q + ++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRLALGVSYNGQAYQGWQSQLSRQTVQDQLEMALSKLASHRVSTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + NA L I++ V +FH R SA+ R Y Y ++ Sbjct: 61 IHFDTPLDRAPNSWVRGTNALL--PRDIAVEWARPVPPEFHCRASALSRRYAYILLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++ G+ K L+ M+ AA HL+G HDF++FR+ CQA SP++ + D++ G Sbjct: 119 RPSIDAGQVGWTFKPLEQVAMQQAASHLLGEHDFSSFRASACQALSPVKMLQRLDISRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH IR+ +G L VG GK L++ L A++R P GLYF Sbjct: 179 ACWRFEFEANAFLHHMIRNIMGCLITVGQGKKPPEWLKEVLLARNRNVAAPTFSAHGLYF 238 Query: 242 DSVEY 246 Y Sbjct: 239 LGPRY 243 >gi|303231239|ref|ZP_07317977.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-049-V-Sch6] gi|302514146|gb|EFL56150.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-049-V-Sch6] Length = 261 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q G ++QG++EKA+ ++ E + ++GA RTD+GVHA Sbjct: 1 MRNIRLIVAYDGTDLAGYQKQPADKGITVQGALEKALSIICAEPIQIYGASRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A A+L I + + + R + + Y+Y I Sbjct: 61 FQVCAFQTSGSIPVENIPRATIAHL--PKDIVVTEAIEIPLDWKPRHNIFGKEYIYSIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R+ + + W + K LD E M A + L G HDF+T + + P++TI + Sbjct: 119 REIADPMGQRYHWHVKKPLDVEAMHQAGKALEGTHDFSTLKGANTTPVDPVKTIYAIGIK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I+I VV FL+ +R+ G L VG G+ + + + L A+DRK G AP +G Sbjct: 179 EKAGRIDISVVGDGFLYHMVRNIAGLLVDVGLGRKSVAQIPELLAAKDRKRIGKTAPAQG 238 Query: 239 LYFDSVEY 246 L + + + Sbjct: 239 LVLEEIFF 246 >gi|298383909|ref|ZP_06993470.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_14] gi|298263513|gb|EFI06376.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_14] Length = 269 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 120/250 (48%), Gaps = 7/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q + KA+ V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V HARF A R+Y Y + T + Sbjct: 61 VAHFDHEDVLDTVTVADKLNRLL--PPDISVYRVRQVKPDAHARFDATARTYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + SLD E M AA+ L DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRCRVYGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKM 176 Query: 181 GNL---IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + A FL +R+ VG+L VG GK T K ++ QDR + G AP Sbjct: 177 EGEDTTWVFTIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAPGN 236 Query: 238 GLYFDSVEYS 247 L+ +VEY Sbjct: 237 ALFLVNVEYP 246 >gi|254412106|ref|ZP_05025881.1| tRNA pseudouridine synthase A [Microcoleus chthonoplastes PCC 7420] gi|196181072|gb|EDX76061.1| tRNA pseudouridine synthase A [Microcoleus chthonoplastes PCC 7420] Length = 283 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 113/247 (45%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ + ++Q IE+ + V G+ V +HGAGRTD+GVHA QV Sbjct: 10 QRIALVIQYLGTKFSGWQRQPHHRTVQAEIEQVLSTVEGKPVTLHGAGRTDTGVHAAAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ R LN+ L + I I + V +HARFSAI R Y Y I T Sbjct: 70 AHFNSSRPIPGERWMPILNSRL--PEDILIRASAPVPANWHARFSAIWRRYRYSIYTDAC 127 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W LD ++ A L G+H F + T+ Sbjct: 128 PNLFVRPFCWHYYHAPLDEHRIQEALNPLWGKHHLAAFHRANSGRKHSWVTVQDTHCYRN 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A FL+ +R VG L VG G + + Q R+ AP +GL Sbjct: 188 GSFIHIEIQADGFLYGMVRLLVGMLVEVGRGNLNPHEFTQLWVNQQRERIKYSAPAKGLC 247 Query: 241 FDSVEYS 247 V Y Sbjct: 248 LLRVGYP 254 >gi|88799996|ref|ZP_01115567.1| tRNA-pseudouridine synthase I [Reinekea sp. MED297] gi|88777274|gb|EAR08478.1| tRNA-pseudouridine synthase I [Reinekea sp. MED297] Length = 286 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 126/246 (51%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ + GWQ QK S+IQ ++E AI V E V AGRTD+GVHA Q+ Sbjct: 15 RIVLCLEYKGTAFHGWQIQKSGVSTIQAALEAAIAKVADEPVSTIVAGRTDAGVHATNQI 74 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N L D IS+ ++ VD+ FHARFSA R+Y + I Sbjct: 75 VHFDTRAQRSDYGWKMGINGRL--PDDISVKWVTQVDEHFHARFSAQERAYRFIIHNNWV 132 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL LD M+ AA L+G HDF++FR+ CQA SP+RT+ V FG Sbjct: 133 KSALLHEVTTWEQYELDVGLMQQAANRLLGTHDFSSFRAAECQAHSPVRTLRELTVARFG 192 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I+ A FLH +R+ VG + +G G+ L +DR+ G A GLYF Sbjct: 193 EFIVIQARADGFLHHMVRNLVGVMLPIGRGRKPVDWASDVLNYKDRRRGGVTAKGNGLYF 252 Query: 242 DSVEYS 247 Y+ Sbjct: 253 VRASYN 258 >gi|313207118|ref|YP_004046295.1| tRNA pseudouridine synthase a [Riemerella anatipestifer DSM 15868] gi|312446434|gb|ADQ82789.1| tRNA pseudouridine synthase A [Riemerella anatipestifer DSM 15868] Length = 246 Score = 271 bits (693), Expect = 8e-71, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RYC+ YNG YFG+Q Q S+Q ++E+A+ + E + GAGRTD+GVHA + Sbjct: 1 MSRYCIEFSYNGEKYFGYQIQPKQISVQETLEQALSTILREEIKTTGAGRTDTGVHAKKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +L K LN++L IS+ L V FHARF A R+Y Y I + Sbjct: 61 FAHFDTDLILEEELLPKRLNSFL--PPDISVKRLFRVSSDFHARFDATYRTYEYYISLEK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + L+ E M A + L DFT+F ++ + + I Sbjct: 119 NPFTQNSAWGYW-RRPLNLEAMNEACKILFEYTDFTSFSKLNTDTKTNLCEIYKAFWVQE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + A FL +R+ VG++ +G GK DL K ++A++R G AP +GL+ Sbjct: 178 GTELKFTISANRFLRNMVRAIVGTMVDIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGLF 237 Query: 241 FDSVEYS 247 V Y+ Sbjct: 238 LVDVGYN 244 >gi|302784784|ref|XP_002974164.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii] gi|300158496|gb|EFJ25119.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii] Length = 321 Score = 271 bits (693), Expect = 8e-71, Method: Composition-based stats. Identities = 95/279 (34%), Positives = 146/279 (52%), Gaps = 33/279 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + GWQRQ+ ++QG++E A G+ V G+ RTD+GVHALR V Sbjct: 28 QRYLVGIEYIGTRFSGWQRQEGVRTVQGTLEDAFSSFMGQSVSTTGSSRTDAGVHALRNV 87 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIR 109 H DL R P ++ +A+N +L+ S + +++ V FHARF A Sbjct: 88 FHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPDFHARFRAKE 147 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YRI+ E+ RAW + + L+ M+ A Q L+G HDF++FR+ CQA+SP Sbjct: 148 RTYYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAASP 207 Query: 169 IRTIDHFDVNSFGNL--------------------IEIRVVARSFLHTQIRSFVGSLKLV 208 ++T++ + + + A+SFL+ Q+R VG+LK V Sbjct: 208 VKTLEELSIRETVSWPHLLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGV 267 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G GK T+ D+ K L+ + P+AP GL+ V+Y Sbjct: 268 GAGKRTAEDVRKILEGRSISLALPMAPASGLFLADVKYD 306 >gi|308070945|ref|YP_003872550.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa E681] gi|305860224|gb|ADM72012.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Paenibacillus polymyxa E681] Length = 261 Score = 271 bits (693), Expect = 8e-71, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 128/257 (49%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M CM + Y+G+ Y G+Q Q NG++IQ +E AI+ +TGE + + G+GRTD+GVHA Q Sbjct: 1 MRNLCMKVNYDGTHYDGFQTQPNGNTIQDCLEHAIYSLTGERLKITGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALNA+L I + + V FHAR A R++Y Y I + Sbjct: 61 VFNFHTESPIPLQRWCLALNAWL--PRDIIVTDAREVPLSFHARRMAKRKTYRYSINANR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 P + P SLD M HLVG D+T+F S Q ++ +RTI + Sbjct: 119 FPDIFHRRTQVHHPTSLDVRAMEEGLAHLVGTFDYTSFASRRSQKTNHVRTIYEAYMTVD 178 Query: 179 --------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +I + FL +R +G+L VG+GK +S D+ L+A++R + Sbjct: 179 HSFSRPDSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSSDDIPSILEAKNRSKA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 GP A L +VEY Sbjct: 239 GPTAVGHALTLWNVEYD 255 >gi|329767334|ref|ZP_08258859.1| tRNA pseudouridine synthase A [Gemella haemolysans M341] gi|328836023|gb|EGF85714.1| tRNA pseudouridine synthase A [Gemella haemolysans M341] Length = 265 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS Y G+Q Q N ++IQ IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRIALLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V KALNA I I I+ + V + FH R+++ +++Y Y++ + Sbjct: 61 LHFDTDLNIPDVAWVKALNA--TIPKDIRIVGATTVSEDFHVRYNSTQKTYYYKLYIGRE 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 + E + + ++ +G HDF++F S + +RTI + Sbjct: 119 IDPFLLNYVGKHSFDFNFEKAQESLKYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMGKDP 178 Query: 181 --GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N++ + FL+ +R +G+++ V GK+ + +++ L ++R+ GP A G Sbjct: 179 INPNIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEADYIKEILDKKERQFAGPKADAAG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLKEVVYD 247 >gi|125623329|ref|YP_001031812.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris MG1363] gi|166228735|sp|A2RIH1|TRUA_LACLM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124492137|emb|CAL97066.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris MG1363] gi|300070076|gb|ADJ59476.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris NZ9000] Length = 253 Score = 270 bits (692), Expect = 9e-71, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL + L L+ + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDLNGKARDLERLRFGLDT--QTPADIAVKKVELVPDDWHARYQKHEKTYEYYLEN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L+ E M+ A LVG+HDFT F + +RTI ++ Sbjct: 119 SVTRSPFHRHSKAYFRYPLNFERMQGAMVKLVGQHDFTGFTASGSSVDDKVRTIYQAEII 178 Query: 179 S-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG++ +G+ + + ++K L +++R GP A PE Sbjct: 179 QLDKENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPE 238 Query: 238 GLYFDSVEYS 247 GLY V+Y Sbjct: 239 GLYLKEVKYE 248 >gi|224024234|ref|ZP_03642600.1| hypothetical protein BACCOPRO_00957 [Bacteroides coprophilus DSM 18228] gi|224017456|gb|EEF75468.1| hypothetical protein BACCOPRO_00957 [Bacteroides coprophilus DSM 18228] Length = 249 Score = 270 bits (692), Expect = 9e-71, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + ++G+ Y GWQ Q NG+S+Q ++ KA+ + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLSFDGTNYHGWQIQPNGASVQETLMKALSTFLRREIEVVGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD E ++ LN L I++ + V + HARF A R+Y Y I TR+ Sbjct: 61 VAHFDFDTELDGEVVTDKLNRLL--PPDIAVYGVRRVKPEAHARFDATSRTYKYYIHTRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +G +W I + LD E M AAQ L DFT+F +H + I Sbjct: 119 --DPFRRGYSWRIFQPLDFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCRIMLARWEQT 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + A FL +R+ VG+L VG GK T + ++ ++R G P L Sbjct: 177 GDGEWVFTIRADRFLRNMVRAVVGTLVEVGRGKLTVDGFRRVIEEKNRCSAGTSVPGHAL 236 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 237 YLTDVSYP 244 >gi|298482201|ref|ZP_07000389.1| tRNA pseudouridine synthase A [Bacteroides sp. D22] gi|298271758|gb|EFI13331.1| tRNA pseudouridine synthase A [Bacteroides sp. D22] Length = 249 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 120/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + LN L ISI + V HARF A R+Y Y + T + Sbjct: 61 VAHFDFDEPLDEISVADKLNRLL--PPDISIYRVCRVRPDAHARFDATARTYKYYVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + LD M AA+ L DFT+F +H + I I H + Sbjct: 119 YP--FNRQYRWRVYNQLDYALMNEAARTLFEYTDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 237 FLVNVEYP 244 >gi|315022484|gb|EFT35511.1| tRNA pseudouridine synthase A [Riemerella anatipestifer RA-YM] gi|325335444|gb|ADZ11718.1| Pseudouridylate synthase [Riemerella anatipestifer RA-GD] Length = 246 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RYC+ YNG YFG+Q Q S+Q ++E+A+ + E + GAGRTD+GVHA + Sbjct: 1 MLRYCIEFSYNGEKYFGYQIQPKQISVQETLEQALSTILREEIKTTGAGRTDTGVHAKKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +L K LN++L IS+ L V FHARF A R+Y Y I + Sbjct: 61 FAHFDTDLILEEELLPKRLNSFL--PPDISVKRLFRVSSDFHARFDATYRTYEYYISLEK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + L+ E M A + L DFT+F ++ + + I Sbjct: 119 NPFTQNSAWGYW-RRPLNLEAMNEACKILFEYTDFTSFSKLNTDTKTNLCEIYKAFWVQE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + A FL +R+ VG++ +G GK DL K ++A++R G AP +GL+ Sbjct: 178 GAELKFTISANRFLRNMVRAIVGTMVDIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGLF 237 Query: 241 FDSVEYS 247 V Y+ Sbjct: 238 LVDVGYN 244 >gi|290968602|ref|ZP_06560140.1| tRNA pseudouridine synthase A [Megasphaera genomosp. type_1 str. 28L] gi|290781255|gb|EFD93845.1| tRNA pseudouridine synthase A [Megasphaera genomosp. type_1 str. 28L] Length = 264 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 C+I+ Y+G+ + G+QRQ N SSIQ IE+A+ + E + V+GA RTD+GVHA QV Sbjct: 6 NICLIVAYDGTDFHGFQRQTNASSIQQYIEEALTRIFQEPITVYGAARTDAGVHARGQVV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + A+ AYL TI++L + F R + Y YRI+ R P Sbjct: 66 NFYASGSIPVDKIPYAMKAYL--PPTIAVLQAREMASHFSVRHDNCGKHYCYRIVNRAVP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + +W I K LD E MR A L+G HDF+ F + +PI+T+ + + Sbjct: 124 DPFQLRYSWFIRKPLDVEAMRQGANILLGTHDFSAFEGKNTTPMNPIKTMYAVQIQKNRD 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +EI V+ FL+ +R+ G L +G ++T+ + L+ DRK+ G AP GL + Sbjct: 184 NVEIHVIGDGFLYHMVRNMAGGLADIGLHRFTTIHFRRILKGLDRKKLGATAPAGGLCLE 243 Query: 243 SVEY 246 V Y Sbjct: 244 EVFY 247 >gi|229823506|ref|ZP_04449575.1| hypothetical protein GCWU000282_00804 [Catonella morbi ATCC 51271] gi|229786950|gb|EEP23064.1| hypothetical protein GCWU000282_00804 [Catonella morbi ATCC 51271] Length = 257 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 128/253 (50%), Gaps = 8/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 M RY + + Y+GS + G+Q Q NG SIQ +++ A+ + G + +GRTDSGVH Sbjct: 1 MPRYAIQLAYDGSRFVGYQVQPNGPSIQANLDAALIKMAKCPEGVTIPTVASGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV HFD + +ALNA L I ++ ++ V FHAR+ AI + Y YR+ Sbjct: 61 ALGQVVHFDYPAPMPQQAMQRALNALL--DPAIKVVAVARVADDFHARYHAIGKEYRYRV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--H 174 ++ + P D + + A + +VG HDFT+F S +RT+ Sbjct: 119 DIGAYANPFKRLYSLHHPYRYDLDRINQALEAVVGTHDFTSFCSTKTDKEDKVRTVHLAR 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + + FL+ IR VG+ +GDG +LE+ +Q Q+RKE GP A Sbjct: 179 VWEDRDQQELVFQFRGTGFLYNMIRILVGTSLQIGDGLRPVNELERLIQVQNRKEAGPTA 238 Query: 235 PPEGLYFDSVEYS 247 PP+GLY V Y Sbjct: 239 PPQGLYLHQVFYE 251 >gi|91789465|ref|YP_550417.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666] gi|123059533|sp|Q126M3|TRUA_POLSJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91698690|gb|ABE45519.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666] Length = 264 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 124/250 (49%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+GS Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRIALGISYSGSAYEGWQSQLSGNTVQDKLESALARFAAQPVRTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V + NA+L I++ V FH R SAI R Y Y ++ Sbjct: 61 VHFDTVLHRDMGSWVRGTNAFL--PSDIAVQWAREVPDTFHCRGSAIARRYAYVVLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + + LD MR A HLVG HDF++FR+ CQA SP++TI+ +++ Sbjct: 119 RPSVEAGRVGWVYRPLDGAAMRQAITHLVGEHDFSSFRAAQCQAKSPVKTINRIEISERA 178 Query: 182 N----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 A +FLH IR+ +G L +G G L + A+ R P P Sbjct: 179 GTGSKYWHFEFEANAFLHHMIRNIMGCLVAIGQGSHEPGWLLDVMAARSRDAAAPTFSPN 238 Query: 238 GLYFDSVEYS 247 GLYF Y Sbjct: 239 GLYFLGPVYE 248 >gi|327539206|gb|EGF25829.1| tRNA pseudouridine synthase A [Rhodopirellula baltica WH47] Length = 276 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 14/254 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G+ Y GWQ Q SIQ +E+ I + G V V G+GRTD+GVHA+ QVA Sbjct: 12 LTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTDAGVHAIGQVARCV 71 Query: 66 LVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L V L +A+N+ L + I + + ++FH A + Y Y + + Sbjct: 72 LPAWKANTVALQRAINSKL--PNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSRDP 129 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----- 179 + +D M+ AA VGRHDF F+ + S +RTI Sbjct: 130 FANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHLARWIPRVATG 189 Query: 180 ------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 G + FL+ +R+ +G++ VG GK +++ L ++DRK GP Sbjct: 190 PTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKPLDWIDEVLASRDRKMAGPT 249 Query: 234 APPEGLYFDSVEYS 247 APP+GL+ V+Y Sbjct: 250 APPQGLFLCRVDYP 263 >gi|317126894|ref|YP_004093176.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522] gi|315471842|gb|ADU28445.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522] Length = 260 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-VVHGAGRTDSGVHALR 59 M R I+ Y+G+ Y G+Q Q + +IQ +EKA+ + V +GRTD+GVH+L Sbjct: 1 MKRVKGIVTYDGTKYSGYQVQVDKKTIQAELEKALAKIHKADSWNVVSSGRTDTGVHSLG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD +A N L D I + +L V FHARF ++ + Y+Y++ T Sbjct: 61 QTIHFDTSLSIPEERWPQAFNRLL--PDDIQVRDLQYVHHDFHARFDSVGKKYVYKVNTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + P L E M AA HL G HDFT+F S +RTI ++ Sbjct: 119 REKDIFKRNFVYHHPYVLSYEKMLEAAMHLEGTHDFTSFSSPRTDVIDKVRTIYAIELEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + FL+ +R G+L VG GK ++ + + +DR GP P GL Sbjct: 179 NGDEWTFTYIGNGFLYQMVRVLTGTLLHVGKGKIRPEEIPEIFEGKDRSLAGPSIPGTGL 238 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 239 YLTNVYYD 246 >gi|146302394|ref|YP_001196985.1| tRNA pseudouridine synthase A [Flavobacterium johnsoniae UW101] gi|146156812|gb|ABQ07666.1| tRNA pseudouridine synthase A [Flavobacterium johnsoniae UW101] Length = 284 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 125/246 (50%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG+ Y GWQ Q N SS+Q ++ KA+ ++ + V GAGRTD+GVHA Sbjct: 41 MRYFIHFAYNGTHYHGWQFQPNASSVQETLNKALSVLLNSTINVMGAGRTDTGVHAEEMY 100 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL + +L LN+YL I++ NL V H RF A +R+Y Y I T + Sbjct: 101 GHFDLEKSIDIPVLVHKLNSYL--PKDIAVYNLIPVHDDAHCRFDATKRTYEYHINTVKN 158 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E +W + + LD E M AA+ L+ DF F ++ ++ TI Sbjct: 159 PFLEE--LSWYVTQKLDVELMNEAAKILLKHTDFQCFSKVNTDVNTFDCTIFEAYWKQEN 216 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L +G K T D E + +++R++ G P GLY Sbjct: 217 NKLVFTISANRFLRNMVRAIVGTLINIGLHKITLADFENIIASKNREKAGFSVPAHGLYL 276 Query: 242 DSVEYS 247 + Y Sbjct: 277 TKIYYD 282 >gi|299144417|ref|ZP_07037497.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518902|gb|EFI42641.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 243 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 124/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +I+ Y+GS Y G+Q Q S+++G ++ AI + ++ AGRTDSGVHA+ Q Sbjct: 1 MNIKLIVSYDGSSYHGFQIQPQASTVEGVLKNAIEDTVKHEIKLYTAGRTDSGVHAMGQC 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L K +N +L D IS++ S VD FHAR+SA + Y Y I + Sbjct: 61 VNFYSETTINIGNLPKVINFHL--PDDISVVGASYVDDDFHARYSAKGKYYRYMIYRGKY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + RA P L+ + M+ +L+G +D+ TF H IR ID +V G Sbjct: 119 RNPLYRNRAMHFPYELNLKKMQSTLNYLIGENDYKTFMGRHAIVKDTIRRIDKIEVVEDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I +SFL +R VG+ + G++ ++ AL + RK GP AP GLY Sbjct: 179 DFIYIDFYGKSFLKNMVRIIVGTAVEIARGRFEEEYMKYALNKKHRKAAGPTAPSYGLYL 238 Query: 242 DSVEY 246 + Y Sbjct: 239 MKIYY 243 >gi|256844460|ref|ZP_05549946.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 125-2-CHN] gi|256613538|gb|EEU18741.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 125-2-CHN] Length = 262 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V +GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQRVIVQVSGRTDAGVHAVGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + A+N+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSMM--PTDIIFDDCQIVDENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 ++ P LD E M++AAQ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSFAASGGQIEDKVRTIYYINITK 180 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 DEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQTAHAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYD 250 >gi|189183835|ref|YP_001937620.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Ikeda] gi|238692245|sp|B3CSN9|TRUA_ORITI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189180606|dbj|BAG40386.1| pseudouridylate synthase I [Orientia tsutsugamushi str. Ikeda] Length = 283 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 110/284 (38%), Positives = 148/284 (52%), Gaps = 39/284 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY I+EY+G+ + GWQRQ+NG SIQ +E I T + V + AGRTD+GVHAL Q Sbjct: 1 MLRYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQ 60 Query: 61 VAHF-------------------------------------DLVREWVPVILCKALNAYL 83 V HF L + L A+N YL Sbjct: 61 VVHFDLISPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKMLPCRYNAYKLMSAVN-YL 119 Query: 84 KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 I + + I QFHARFSA R Y YRII R P +E+ R W I L+ +M Sbjct: 120 LKPHRIILTSCEITTLQFHARFSAKARHYKYRIINRAVPSVIEQNRTWWIKTPLNVIDMI 179 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFV 202 A+QHL+G+HDFT+FRS CQA SP++T+ +V + I+I A SFLH +R+ V Sbjct: 180 DASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDTTNYPEIQIYFSAPSFLHHMVRNIV 239 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+L +G K + ++ L A++R GP AP GLYF V+Y Sbjct: 240 GTLVYIGLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 283 >gi|325660678|ref|ZP_08149308.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] gi|325473039|gb|EGC76247.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] Length = 249 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 90/252 (35%), Positives = 127/252 (50%), Gaps = 10/252 (3%) Query: 1 MIR-----YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M++ Y M I Y+G GY GWQR N +IQG+IE+ + + G V + G+GRTD+G Sbjct: 1 MMKKIKKNYKMTIAYDGGGYKGWQRLTNEPGTIQGTIERVLSEIEGSPVKISGSGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QVAH L P +L + LN L + I I + V + FH+R+SA+ + Y Y Sbjct: 61 VHAKGQVAHVFLKTNEDPELLRQELNRML--PEDIRICRVESVSQSFHSRYSAVSKVYEY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 RI R + + P LD + MR AA HL G HDF +F + + +RTI Sbjct: 119 RIDQRSRADVFTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSF--TDNKEADSVRTIFS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 D+ + + FL+ +R G+L VG+G T + +A +DR G LA Sbjct: 177 IDMKEENEKLVLAFCGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDRSLTGFLA 236 Query: 235 PPEGLYFDSVEY 246 P GL V Y Sbjct: 237 PAHGLCLREVNY 248 >gi|118594739|ref|ZP_01552086.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181] gi|118440517|gb|EAV47144.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181] Length = 264 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + YNG G+ GWQ+Q + +IQG IE A+ + + V+ H +GRTDSGVHAL Q+ Sbjct: 1 MRIACSVSYNGYGFSGWQKQPDVKTIQGLIESALTEIAKDTVITHASGRTDSGVHALGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + K +NA+L +I + + + FHAR S + R Y Y +I Sbjct: 61 IHFDTTKNRPLTAWVKGVNAFL--PSSIKVRWAKNISESFHARHSVLEREYQYLLIKDTN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ A LD N+ A + G HDF++FRS CQA SP+RTI+ F FG Sbjct: 119 NSAIFHATAGWTYFDLDDYNLMAACKCFEGTHDFSSFRSSECQAKSPVRTINQFRCEQFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + A FLH QIR+ + ++ V + + ++ L +DR P P GLY Sbjct: 179 NTYLFTIRANGFLHHQIRNMIAAVIHVAKNEDSVGFIDDLLSKKDRTLAPPTFMPNGLYL 238 Query: 242 DSVEYS 247 +++Y Sbjct: 239 SNIKYD 244 >gi|302346677|ref|YP_003814975.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC 25845] gi|302150885|gb|ADK97146.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC 25845] Length = 253 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 117/257 (45%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E A+ + E + + GAGRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHALSTILRESIAITGAGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L +N L +S+ + V + HARFSA R+Y Y + T + Sbjct: 61 VAHFDTELSFDCAQLVYKVNRLL--PRDVSVSRIEPVGEDLHARFSATSRTYHYYVHTGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + SLD + M AA +L+G DF F + I + Sbjct: 119 QP--FSRQYSCALHYSLDFDKMNEAAAYLIGEKDFKCFCKAGADVKTTICNLTEARWIPT 176 Query: 181 GNL-----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + A FL +R+ VG+L VG G+ + + +K + R + Sbjct: 177 NDEFALATDDTVTNWCFVITANRFLRNMVRAVVGTLVEVGRGRLSLDEFKKIVDGGTRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ V+Y Sbjct: 237 AGESMPGNALFLWEVKY 253 >gi|227894551|ref|ZP_04012356.1| tRNA pseudouridine synthase A [Lactobacillus ultunensis DSM 16047] gi|227863710|gb|EEJ71131.1| tRNA pseudouridine synthase A [Lactobacillus ultunensis DSM 16047] Length = 262 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 131/250 (52%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRVIVQGSGRTDAGVHAIGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + + A+N+ + I IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSMM--PMDIIFNKCQIVDEDFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 ++ P L+ M+ AA+ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFPYQLNISKMQEAARDLLGKHDFTSFAASGGQIEDKVRTIYYVNIEK 180 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ +R V +L +G+G+ DL++ + A+DR+E A Sbjct: 181 DEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNGRRPIHDLKRVISAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 241 GLYLYHVFYE 250 >gi|332529464|ref|ZP_08405423.1| tRNA pseudouridine synthase A [Hylemonella gracilis ATCC 19624] gi|332041110|gb|EGI77477.1| tRNA pseudouridine synthase A [Hylemonella gracilis ATCC 19624] Length = 270 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 12/256 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ Y GWQ Q +G ++Q +E A+ E + + AGRTD+GVH L QV Sbjct: 1 MRVALGLSYDGAAYDGWQSQPSGRTVQDRLEHALGRFANERITTNCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V +FH+R SA R Y Y ++ Sbjct: 61 VHFDTQAQRTPYAWVRGTNTHL--PPDIAVQWAHPVPVEFHSRASATSRRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E R + + LD + M+ A HL+G DFT+FR+ CQA SPI+ + +++ G Sbjct: 119 RPSVEARRVGWVFQPLDLDAMQAALPHLLGERDFTSFRAAACQALSPIKNLMRVEISRRG 178 Query: 182 N----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 A +FLH IR+ +G L ++G GK + + + A+ R Sbjct: 179 TRAGAEAPETCYWRFEFEASAFLHHMIRNIMGCLIVIGQGKKPPEWMAEVVAARSRDAAA 238 Query: 232 PLAPPEGLYFDSVEYS 247 P P+GLYF Y Sbjct: 239 PTFMPDGLYFLGPRYD 254 >gi|241890020|ref|ZP_04777318.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379] gi|241863642|gb|EER68026.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379] Length = 265 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS Y G+Q Q N ++IQ IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRVVLLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KALNA I I I+ + + FH R+++ +++Y Y++ + Sbjct: 61 LHFDTDLNIPDEAWVKALNA--TIPKDIRIVGATSASEDFHVRYNSTQKTYYYKLHIGRE 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 + E + A Q+ +G HDF++F S + +RTI + Sbjct: 119 VDPFLLNYVGKHSFDFNFEKAQEALQYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMEKDL 178 Query: 181 --GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N++ + FL+ +R +G+++ V GK+ + +++ L+ ++R+ GP A G Sbjct: 179 INPNIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEANYVKEILEKKERQFAGPKADAAG 238 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 239 LYLKEVLYD 247 >gi|296113461|ref|YP_003627399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4] gi|295921155|gb|ADG61506.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4] gi|326559732|gb|EGE10142.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169] gi|326568129|gb|EGE18213.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7] gi|326568548|gb|EGE18620.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1] Length = 268 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 132/243 (54%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IE+ G+ Y GWQRQ+ +Q IEKA+ + E + + AGRTD+GVHA +AH Sbjct: 6 LAVGIEFIGTRYRGWQRQEEVIGVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F E + N+ L D I++ + + FHARFSAI R Y Y + + Sbjct: 66 FVTHAERSAHSWLRGTNSLL--PDDIALRWVQPMPDDFHARFSAIARRYRYITLNQPYRP 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + LD + M IA+Q +VG HDF++FR+ CQ++ P+RT+ H ++ G+ Sbjct: 124 AILHHQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVTHANLFQHGSY 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A FLH +R+ +G+L VG G+ + + + A++R P A +GLYF + Sbjct: 184 LILDIQADGFLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTLAPPTASADGLYFIN 243 Query: 244 VEY 246 Y Sbjct: 244 AYY 246 >gi|254467822|ref|ZP_05081228.1| tRNA pseudouridine synthase A [beta proteobacterium KB13] gi|207086632|gb|EDZ63915.1| tRNA pseudouridine synthase A [beta proteobacterium KB13] Length = 258 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I+EY G+ Y G+Q Q N ++IQ I+KA+ + V + +GRTD+GVHAL QV Sbjct: 1 MRIAAIVEYLGTNYAGFQIQPNLNTIQLCIQKALSKIANHDVKIEASGRTDAGVHALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + N++L ISI +S VDK FHARF+ + R Y Y + Sbjct: 61 FHFDTESQRPLNSWKRGANSFL--PQDISIKWVSEVDKNFHARFNVMEREYQYLLHCNDT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A+ +A ++ + + + +G+HDFT+FRS CQ+ PIR + Sbjct: 119 PSAIWHQKAGHYGYEINFKLLDKVLKEFIGKHDFTSFRSSECQSKKPIRIMHDVSYQKKE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + A FLH QIR+ + + V GK ++ + +DR + P GLY Sbjct: 179 NFILFKFTADGFLHHQIRNMMSVILDVVSGKKPLDYVQYLFEVKDRTKASNTFSPNGLYL 238 Query: 242 DSVEYS 247 +++Y Sbjct: 239 ANIKYE 244 >gi|325955163|ref|YP_004238823.1| tRNA pseudouridine synthase A [Weeksella virosa DSM 16922] gi|323437781|gb|ADX68245.1| tRNA pseudouridine synthase A [Weeksella virosa DSM 16922] Length = 248 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG YFGWQRQ S+Q IE + + E + + GAGRTD+GVHA + Sbjct: 1 MRYFLELAYNGQNYFGWQRQPKQLSVQEKIEFCLSTLLREEINIVGAGRTDTGVHAKKMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + LN++L + IS+ ++ V + HARF A++R+Y Y I T++ Sbjct: 61 AHFDFDGSLTDDFIRR-LNSFL--PEDISVTSIHCVAPEAHARFDAVKRTYHYHIYTQKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 P +W I K LD E M AA++L+ + DF +F +H + I T+ + Sbjct: 118 P--FTTTTSWQIRKPLDIEKMNEAAKYLIKKADFGSFAKLHTDVKTNICTVYRAEWIQIE 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK T +D + +DRK APP+GL+ Sbjct: 176 KDFFCFEITADRFLRNMVRAIVGTLVEVGLGKITPSDFNNIIDKKDRKFAAASAPPQGLF 235 Query: 241 FDSVEYS 247 V Y Sbjct: 236 LVEVLYP 242 >gi|302770785|ref|XP_002968811.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii] gi|300163316|gb|EFJ29927.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii] Length = 300 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 96/279 (34%), Positives = 143/279 (51%), Gaps = 33/279 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + GWQRQ ++QG++E A G+ V G+ RTD+GVHALR V Sbjct: 7 QRYLVGIEYIGTRFSGWQRQGGVRTVQGTLEDAFSSFMGQSVSTTGSSRTDAGVHALRNV 66 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIR 109 H DL R P ++ +A+N +L+ S + +++ V FHARF A Sbjct: 67 FHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPDFHARFRAKE 126 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YRI+ E+ RAW + + L+ M+ A Q L+G HDF++FR+ CQA+SP Sbjct: 127 RTYYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAASP 186 Query: 169 IRTIDHFDVNSFGNLIEI--------------------RVVARSFLHTQIRSFVGSLKLV 208 I+T++ + + A+SFL+ Q+R VG+LK V Sbjct: 187 IKTLEELSIRETVSWPHFLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGV 246 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G GK T D+ K L+ + P+AP GL+ V+Y Sbjct: 247 GAGKRTVEDVRKILEGRSISLALPMAPASGLFLADVKYD 285 >gi|27904686|ref|NP_777812.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611884|sp|P59508|TRUA_BUCBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27904083|gb|AAO26917.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I) [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 264 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS Y GWQ QK SS+Q +E A+ ++ V V AGRTD+GVH+ QV Sbjct: 7 KIALGIEYNGSNYHGWQYQKFASSVQEKVELALSIIANHPVRVTCAGRTDAGVHSTGQVV 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF N YL IS++ V FHAR+SA+ R Y Y + Sbjct: 67 HFCTSSIRNDQAWILGTNRYL--PKDISVIWKRDVPMHFHARYSALSRRYRYILYNNSCR 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 ++ + L+ E M AAQ+L+G HDFTTFRS HCQ+ +P R I + +V Sbjct: 125 SSIFYQGLKFYHRILNVEKMNQAAQYLLGEHDFTTFRSSHCQSKTPFRKILYVNVFCINC 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI I +VA SFL+ +R+ VG L +G K T + L+ ++R + GLY Sbjct: 185 LIIIDIVANSFLYHMVRNIVGCLIEIGISKKKVTWIRDILKFKNRTSSTKIVESNGLYLV 244 Query: 243 SVEYS 247 V+YS Sbjct: 245 QVQYS 249 >gi|298695476|gb|ADI98698.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED133] Length = 267 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RNPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAAAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|282917564|ref|ZP_06325316.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus D139] gi|283767311|ref|ZP_06340226.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus H19] gi|282318526|gb|EFB48884.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus D139] gi|283461190|gb|EFC08274.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus H19] Length = 267 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAAAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|238018655|ref|ZP_04599081.1| hypothetical protein VEIDISOL_00490 [Veillonella dispar ATCC 17748] gi|237865126|gb|EEP66416.1| hypothetical protein VEIDISOL_00490 [Veillonella dispar ATCC 17748] Length = 261 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q + ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIRIIVAYDGTDLAGYQKQPDDKGLTVQGCLEYGLSKICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I +L + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGSIPVENIPRAMIAH--IPKDIVVLEALEIPLDWKPRWNIYGKEYVYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L K W + K L+ + M+ A L+G HDFTT + + + P++TI V Sbjct: 119 QLIANPLTKRYHWHVKKPLNIDLMQAAGNELLGTHDFTTLKGTNSTPADPVKTIIGIHVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +G Sbjct: 179 AEGSHVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQG 238 Query: 239 LYFDSVEY 246 L + + + Sbjct: 239 LCLEEIFF 246 >gi|169830000|ref|YP_001700158.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41] gi|238688163|sp|B1HMV0|TRUA_LYSSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168994488|gb|ACA42028.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41] Length = 246 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q IE+ + ++ E V V +GRTD+ VHA Sbjct: 1 MRRLKIIISYDGTHFSGYQVQPGERTVQAEIERVLAIMHKEEKVKVTASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN L I +L++ V FHAR+S + Y Y Sbjct: 61 QTLHFDTPLAIPTDKYRKALNVQL--PRDIRVLSVEEVAHDFHARYSVTGKRYRYIWSCE 118 Query: 120 QAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + D M+ AAQ ++G HDF+ F + + +RT+ Sbjct: 119 PIQNPFRRHYTVDTNGVKPDVVAMQKAAQAIIGTHDFSCFCAANTSVQDKVRTVTSLQFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + + FL+ +R G+L VG + T ++ + ++DR + G APP+G Sbjct: 179 WHGEELHMVIEGNGFLYNMVRIIAGTLWEVGIDRRTIENIALVVASEDRDKAGKTAPPQG 238 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 239 LYLEKVFY 246 >gi|262374120|ref|ZP_06067397.1| tRNA pseudouridine synthase A [Acinetobacter junii SH205] gi|262311131|gb|EEY92218.1| tRNA pseudouridine synthase A [Acinetobacter junii SH205] Length = 265 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 127/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G+ Y GWQ +Q S+Q +IEK + + V++H AGRTD+GVHA Sbjct: 1 MQRYAIGIEFCGTQYRGWQTQQAGVVSVQETIEKVLSKIADHPVILHAAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D+ FHARF A+ R Y Y + Sbjct: 61 MVAHFDTTAIRPERGWLMGANSQL--PKDISIQWIKCMDENFHARFKAMARRYRYLVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + + LD + M AA G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PTRPALLHKQVTHLYQELDVQKMIKAAAKFEGTHNFESFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DR+ G AP +GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRRAAGITAPADGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQSYYP 246 >gi|148284891|ref|YP_001248981.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Boryong] gi|166228742|sp|A5CET3|TRUA_ORITB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146740330|emb|CAM80738.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Boryong] Length = 284 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 110/285 (38%), Positives = 148/285 (51%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY I+EY+G+ + GWQRQ+NG SIQ +E I T + V + AGRTD+GVHAL Q Sbjct: 1 MLRYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQ 60 Query: 61 VAHF--------------------------------------DLVREWVPVILCKALNAY 82 V HF L + L A+N Y Sbjct: 61 VVHFDLIAPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKKMLPCRYNAYKLMSAVN-Y 119 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 L I + + I QFHARFSA R Y YRII R P +E+ R W I L+ +M Sbjct: 120 LLKPHRIILTSCEITTLQFHARFSAKARHYKYRIINRTVPSVIEQNRTWWIKPPLNVIDM 179 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSF 201 A+QHL+G+HDFT+FRS CQA SP++T+ +V + I+I A SFLH +R+ Sbjct: 180 IDASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDTTNYPEIQIYFSAPSFLHHMVRNI 239 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+L +G K + ++ L A++R GP AP GLYF V+Y Sbjct: 240 VGTLVYIGLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 284 >gi|317495541|ref|ZP_07953909.1| tRNA pseudouridine synthase A [Gemella moribillum M424] gi|316914355|gb|EFV35833.1| tRNA pseudouridine synthase A [Gemella moribillum M424] Length = 265 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GSGY G+Q Q N +++Q IEKA+ + + + V+ +GRTDSGVHA QV Sbjct: 1 MRVVLLCRYDGSGYHGFQIQPNNNTVQEEIEKALKKINKKDIRVYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KALNA L I I ++ ++ FH R+++ R++Y Y++ Q Sbjct: 61 LHFDTELNIPNEAWKKALNANL--PADIRIFGVTTSNEDFHVRYNSTRKTYHYKLYIGQN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---N 178 + + E + A + +G HDF++F S + IR I +F++ Sbjct: 119 VDPFLLNYVGQHKYNFNFEKAQKALNYFIGEHDFSSFCSKNSSVEDKIREIYYFNMYYDK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +I V FL+ +R +G+++ V GK+ + +++ L ++RK GP A G Sbjct: 179 TNPRVINFDVCGNGFLYNMVRIIIGTIQDVAAGKYGAEYVKEILDKKERKYAGPKADAAG 238 Query: 239 LYFDSVEYS 247 LY V Y+ Sbjct: 239 LYLKEVIYN 247 >gi|255321215|ref|ZP_05362381.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SK82] gi|262380100|ref|ZP_06073255.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SH164] gi|255301769|gb|EET81020.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SK82] gi|262298294|gb|EEY86208.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SH164] Length = 265 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 129/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G Y GWQ +Q S+Q ++E+ + + E +++HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFCGIRYRGWQTQQAGVPSVQETLERVLSKIADEKIILHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L I++ L + + FHARF A R Y Y I Sbjct: 61 MVAHFDTHAIRTERGWMMGSNSQL--PKDIALQWLQPMGEDFHARFKACARRYRYVIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + + LD E M+ AA+ G H+F +FR+ CQ++ PIR + H ++ Sbjct: 119 PYRPALLHKQVTHVYQQLDIEKMKKAAKKFRGVHNFESFRAAACQSNQPIRDVTHCELFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L VG G + ++ A+DR+ G AP +GL Sbjct: 179 HGRYLVLDIQANGFLHHMVRNIVGCLLEVGQGMYDIGHIDSIFAAEDRRAAGMTAPADGL 238 Query: 240 YFDSVEYS 247 YF Y Sbjct: 239 YFIQAYYP 246 >gi|303230129|ref|ZP_07316898.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-134-V-Col7a] gi|302515190|gb|EFL57163.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-134-V-Col7a] Length = 261 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q G ++QG++EKA+ ++ E + ++GA RTD+GVHA Sbjct: 1 MRNIRLIVAYDGTDLAGYQKQPADKGITVQGALEKALSIICAEPIQIYGASRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A A+L I + + + R + + Y+Y I Sbjct: 61 FQVCAFQTSGSIPVKNIPRATIAHL--PKDIVVTEAVEIPLDWKPRHNIFGKEYIYSIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R+ + + W + K LD E MR A + L G HDF+T + + P++TI + Sbjct: 119 REIADPMGQRYHWHVKKPLDVEAMRQAGKALEGTHDFSTLKGANTTPVDPVKTIYAIGIK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I+I VV FL+ +R+ G L +G G+ + + + L A+DRK G AP +G Sbjct: 179 EKAGRIDISVVGDGFLYHMVRNIAGLLVDIGLGRKSVARIPELLAAKDRKRIGKTAPAQG 238 Query: 239 LYFDSVEY 246 L + + + Sbjct: 239 LVLEEIFF 246 >gi|312898257|ref|ZP_07757648.1| tRNA pseudouridine synthase A [Megasphaera micronuciformis F0359] gi|310620754|gb|EFQ04323.1| tRNA pseudouridine synthase A [Megasphaera micronuciformis F0359] Length = 266 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + Y+G+ ++G+QRQ + S+Q +E A+ + G + ++GA RTDSGVHA QV Sbjct: 6 NISLRLAYDGTEFYGFQRQSSLPSVQQHVEAALSGIYGRNIRIYGAARTDSGVHARGQVV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F L AL L I +L+ ++ + F R + Y Y ++ P Sbjct: 66 NFYGDDTIPVERLPYALKGSL--PPAIVVLSATLERENFSVRHDNKGKHYRYTLVNDGVP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AW I K L+CE+M+ AA +L G HDF+ F + +P++T+ V S N Sbjct: 124 DPFMLRYAWYIRKPLNCESMKEAASYLKGTHDFSAFEGANTTPMNPVKTMYGIFVVSKKN 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I I VV FL+ +R+ G+L VG G+ +S +++ L+ DR++ G AP +GL + Sbjct: 184 RIIIDVVGSGFLYHMVRNMAGALVDVGMGRKSSQRIKEILKGGDRRKLGATAPAQGLCLE 243 Query: 243 SVEYS 247 V YS Sbjct: 244 EVYYS 248 >gi|163816114|ref|ZP_02207482.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759] gi|158448534|gb|EDP25529.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759] Length = 271 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 124/273 (45%), Gaps = 28/273 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------------------- 38 M Y Y+G+ Y GW+ + N +++G IE + + Sbjct: 1 MTNYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLSKMVDGDNGKTADVCRENMSADIRD 60 Query: 39 --TGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSI 96 T V +HGAGRTD+GVHA VA L P + LN YL I L++++ Sbjct: 61 TKTPAKVDIHGAGRTDAGVHARAMVASGRLNTNRTPDEIKDYLNRYL--PADICALDVTV 118 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHD 154 +FHAR +A + Y Y + ++ W +P+ LD + M+ AA +LVG+HD Sbjct: 119 AGDRFHARLNATGKIYEYTLYVGLEKPVFDRNYVWCVPQGSVLDVDAMKKAASYLVGKHD 178 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F +F + S +RTI ++ G+ + +R FL +R G+L +G G Sbjct: 179 FRSFCGNNKMKKSTVRTIYDVEIVKEGDYVRMRFHGNGFLQNMVRILTGTLVEIGYGHMD 238 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + + + DR+ GP APP GL VEY Sbjct: 239 AEHMPEIIVGMDRQLAGPTAPPHGLCLLKVEYD 271 >gi|294669057|ref|ZP_06734143.1| tRNA pseudouridine synthase A [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309049|gb|EFE50292.1| tRNA pseudouridine synthase A [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 326 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS +FGWQ+Q +G S+Q ++E A+ + GE V V AGRTD+GVHA QV Sbjct: 62 RWALTLSYDGSRFFGWQKQADGVVSVQAALESALSQIAGETVNVVAAGRTDTGVHATAQV 121 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + +N+ L +++ V FHARF A R Y Y + + Sbjct: 122 VHFDTAAERGEQSWIRGVNSLL--PQGVAVWQAKRVASHFHARFDAFGRRYRYVLQSSPV 179 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L R LD M+ AA LVG HDF++FR+ CQA SP++T+ ++ Sbjct: 180 RSPLLAARVGWTHTPLDFAAMQAAAALLVGEHDFSSFRASQCQAKSPVKTLYSVVLHGTP 239 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ VG+L VG+G+ + + L + R + P P+GLY Sbjct: 240 QLMALDLHGNAFLHHMVRNIVGALVYVGNGRLSVQGFAELLAEKSRLKAPPTFMPDGLYL 299 Query: 242 DSVEYS 247 V+Y Sbjct: 300 TGVDYP 305 >gi|89893262|ref|YP_516749.1| hypothetical protein DSY0516 [Desulfitobacterium hafniense Y51] gi|89332710|dbj|BAE82305.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 271 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 118/247 (47%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 C+ + Y+G+ Y G+QRQ +G +IQG++E + E V ++ AGRTD+GVHA Sbjct: 5 RNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLVEEEVTLNTAGRTDTGVHAAG 64 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + KA N+ L I IL + FHARFSA + Y YRI Sbjct: 65 QVVNFRTGARIPVDKIPKAFNSLL--PRDIRILAAQEAAENFHARFSAKWKRYDYRIDNH 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD + M+ AQ+LVGRH+F F + + + RT+ V Sbjct: 123 PVADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAE 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R G+L VG + ++ L + DRK G A P+GL Sbjct: 183 NQGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGL 242 Query: 240 YFDSVEY 246 V Y Sbjct: 243 TLSYVHY 249 >gi|160914527|ref|ZP_02076742.1| hypothetical protein EUBDOL_00533 [Eubacterium dolichum DSM 3991] gi|158433685|gb|EDP11974.1| hypothetical protein EUBDOL_00533 [Eubacterium dolichum DSM 3991] Length = 252 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 118/247 (47%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ+Q N SIQ IE A+ + E V + +GRTD+ VHAL Q Sbjct: 1 MDRYKVTVCYDGTNYAGWQKQDNARSIQEEIECALAKINEEAVEIVASGRTDAHVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +A N+ L I IL + V FHARF A+R+ Y Y I Sbjct: 61 VFHFDAKKALSDEQWVRACNSLL--PKDIRILKVEKVSDSFHARFDAVRKRYDYYITND- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNS 179 + KSLD M+ A +G HDFT+F S + S I+TI +V Sbjct: 118 VLNPFLENYMGKDRKSLDVAYMQECANVFIGTHDFTSFTSSKIDERKSRIKTIYRLEVQQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N + I +FL +R L G + T + + L+A+D+ C A GL Sbjct: 178 EANAVHIIFEGNAFLRYMVRMLAQVLIEAGKHRLTKEAISQMLEAKDKHACRYKASANGL 237 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 238 YLVRVDY 244 >gi|219666536|ref|YP_002456971.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2] gi|219536796|gb|ACL18535.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2] Length = 271 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 118/247 (47%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 C+ + Y+G+ Y G+QRQ +G +IQG++E + E V ++ AGRTD+GVHA Sbjct: 5 RNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLETVWAKLVEEQVTLNTAGRTDTGVHAAG 64 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + KA N+ L I IL + FHARFSA + Y YRI Sbjct: 65 QVVNFRTGARIPVDKIPKAFNSLL--PRDIRILAAQEAAEDFHARFSAKWKRYDYRIDNH 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD + M+ AQ+LVGRH+F F + + + RT+ V Sbjct: 123 PVADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAE 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R G+L VG + ++ L + DRK G A P+GL Sbjct: 183 NQGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGL 242 Query: 240 YFDSVEY 246 V Y Sbjct: 243 TLSYVHY 249 >gi|317154696|ref|YP_004122744.1| tRNA pseudouridine synthase A [Desulfovibrio aespoeensis Aspo-2] gi|316944947|gb|ADU63998.1| tRNA pseudouridine synthase A [Desulfovibrio aespoeensis Aspo-2] Length = 258 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 120/249 (48%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + Y+G+ + GWQ Q ++QG IE A+ + G V +HGAGRTD+GVHAL Q Sbjct: 1 MPRFLLTLAYDGTDFSGWQLQARDRTVQGVIETALTEIMGSPVRLHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + ALNA L + + +L V FHAR+ A ++Y Y + + Sbjct: 61 TAHFDCQDIRASIPWQCALNARL--PEDVRVLACRRVADDFHARYQAQAKTYEYTLWHTR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 ++ R LD M AA+ L G HDF +F++ S IRT+ + Sbjct: 119 EFCLPQRRRFAWNCGPLDFTAMEAAARLLTGEHDFASFQNTGTPVRSTIRTVTAISRHPG 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + R A FL +R+ VG L G G+ + + L A DR APP+G Sbjct: 179 PTPHESVWRFTANGFLKQMVRNLVGCLAACGRGRLAPDEAGRILLAADRALAPATAPPQG 238 Query: 239 LYFDSVEYS 247 L SV Y Sbjct: 239 LTLISVAYP 247 >gi|312880338|ref|ZP_07740138.1| tRNA pseudouridine synthase A [Aminomonas paucivorans DSM 12260] gi|310783629|gb|EFQ24027.1| tRNA pseudouridine synthase A [Aminomonas paucivorans DSM 12260] Length = 260 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y G+ + G+Q Q N S+QG +E A+ ++G V HGAGRTD+GVHA Q Sbjct: 1 MPRYAAEVAYVGASFAGFQAQPNRPSVQGVLEAALEALSGSPVRCHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL R W P L A+ A+L ++ IL ++ V FHARF A+ R Y + + + Sbjct: 61 VVHFDLPRPWDPFRLRGAMAAHL--PPSVEILQVAQVPDSFHARFDALWREYRFFLWNQA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + + W + LD ++ L GRHDF F + RT+ H Sbjct: 119 ACVPHLRPFVWWVKSPLDWTLVQHLLPSLRGRHDFGAFCRSVDRPEDSWRTLLHVSCRRR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I R FL +R VG+L+ V G L+ R E G APP+GL+ Sbjct: 179 GPFIRFRFRGDGFLTNMVRILVGTLEGVARGGMEPEAFLNLLEGGCRSEAGRTAPPQGLF 238 Query: 241 FDSVEY 246 F V Y Sbjct: 239 FWRVGY 244 >gi|302670312|ref|YP_003830272.1| tRNA pseudouridine synthase A TruA2 [Butyrivibrio proteoclasticus B316] gi|302394785|gb|ADL33690.1| tRNA pseudouridine synthase A TruA2 [Butyrivibrio proteoclasticus B316] Length = 265 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVH 56 Y II Y+G+ Y GW+++ + +IQG +E + + G V + GAGRTD+GVH Sbjct: 18 QNYKFIISYDGTRYHGWEKKPDLEMTIQGKLEGVLNRMIGAEGTGEVNLIGAGRTDAGVH 77 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A A L + +N YL + IS+ + + +FHAR++AI ++Y Y Sbjct: 78 ARAMTASAVLDTHLSEAEIQSYMNTYL--PEDISVNEVKVCSDRFHARYNAIGKTYRYTC 135 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++ ++ + + + MR AA+ L+G HDF +F S +R +D + Sbjct: 136 WYGDGKPVFDRKYVTVLDREPNVDMMRKAAELLIGEHDFRSFCGNSKMKKSTVRVLDTIN 195 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + GN I FL +R G+L VG G + ++ L+A DRK+ GP A P Sbjct: 196 IEKNGNYIRFYFHGNGFLQNMVRILTGTLLEVGYGNISPEKIQDILKACDRKKAGPTARP 255 Query: 237 EGLYFDSVEY 246 EGL V+Y Sbjct: 256 EGLCMMKVDY 265 >gi|21283867|ref|NP_646955.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MW2] gi|49487001|ref|YP_044222.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MSSA476] gi|297209968|ref|ZP_06926364.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910980|ref|ZP_07128430.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus TCH70] gi|30913392|sp|Q8NVB7|TRUA_STAAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56749699|sp|Q6G7A2|TRUA_STAAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21205309|dbj|BAB96003.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MW2] gi|49245444|emb|CAG43921.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus MSSA476] gi|296885641|gb|EFH24578.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887960|gb|EFK83155.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus TCH70] Length = 267 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTATAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|166154677|ref|YP_001654795.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 434/Bu] gi|166155552|ref|YP_001653807.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335947|ref|ZP_07224191.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2tet1] gi|238687386|sp|B0B836|TRUA_CHLT2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687485|sp|B0BCA1|TRUA_CHLTB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|165930665|emb|CAP04162.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 434/Bu] gi|165931540|emb|CAP07116.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 267 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 6/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ ++ + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLKTILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF P + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEYS 247 GL V Y Sbjct: 239 YGLSLHHVCYP 249 >gi|89898653|ref|YP_515763.1| tRNA pseudouridine synthase A [Chlamydophila felis Fe/C-56] gi|123735904|sp|Q253C0|TRUA_CHLFF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89332025|dbj|BAE81618.1| tRNA pseudouridine synthase A [Chlamydophila felis Fe/C-56] Length = 268 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y G+ Y GWQRQ N SIQ IE A+ V G+ +VV +GRTDSGVHA Q Sbjct: 1 MKRVVLLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLGKPIVVSSSGRTDSGVHAYGQ 60 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF + P + K LNA L I I ++ + D FHARFSAI + Y Y + Sbjct: 61 VAHFSQPDHPLFSQPQSIKKMLNAIL--PKDIVIRDVVLSDVNFHARFSAIAKEYRYSLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ A+ S+ + M+ A++L+G HDF +F + +S RT+ D+ Sbjct: 119 RSPKPLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRDYTSTERTLFKLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ I FL+ +R+ VGSL + K+ +++ L + R++ P AP Sbjct: 179 IDNEEIVTIICKGNGFLYKMVRNIVGSLLDISKEKYPPEYIQEILAQKSRRKGPPAAPSH 238 Query: 238 GLYFDSVEYS 247 L V Y Sbjct: 239 ALSLHHVCYP 248 >gi|325856892|ref|ZP_08172390.1| tRNA pseudouridine synthase A [Prevotella denticola CRIS 18C-A] gi|325483265|gb|EGC86242.1| tRNA pseudouridine synthase A [Prevotella denticola CRIS 18C-A] Length = 255 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 77/257 (29%), Positives = 118/257 (45%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E ++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T + Sbjct: 63 VAHFDTAQPFDSEQLVYKMNRLL--PRDVSVSRIEAVSADLHARFSAVSRTYHYYIHTGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + I LD + M AA +L+G DF F + + F Sbjct: 121 QP--FSRRYSCEIHYPLDFDKMNEAASYLIGEKDFKCFCKAGADVKTTFCNLTEARWIPF 178 Query: 181 GN-----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 G+ + A FL +R+ VG+L VG G+ + D + + R + Sbjct: 179 GDGLSLSSGGTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADFRQIVDGGTRSD 238 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ ++Y Sbjct: 239 AGESMPGNALFLWDIKY 255 >gi|159027087|emb|CAO89272.1| truA [Microcystis aeruginosa PCC 7806] Length = 271 Score = 269 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 117/245 (47%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ + S+Q IEKA+ + G V +HGAGRTDSGVHA QVA Sbjct: 8 RIALVIQYVGTNFHGWQRQPHHRSVQEEIEKALADILGHAVTLHGAGRTDSGVHAAAQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF P K LNA L D I I + V ++HARFSA+ R Y Y + T P Sbjct: 68 HFQQQSPIPPAHWAKVLNARL--DDDIVIRASAQVPDRWHARFSALWRRYRYTLYTDPIP 125 Query: 123 LALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W + LD + M A L+G+H F + + + G Sbjct: 126 NLFVSPFSWHYYHRPLDADLMARALAPLLGKHHLAAFHRANSSRDHSWVEVQGVECYRQG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + A FL+ +R VG L VG G+ + + Q R+ AP +GL Sbjct: 186 PFVQMEIQANGFLYGMVRLLVGMLVEVGTGERSLENFTDIWVNQRRELVKYAAPAKGLCL 245 Query: 242 DSVEY 246 V Y Sbjct: 246 LRVGY 250 >gi|116493132|ref|YP_804867.1| pseudouridylate synthase [Pediococcus pentosaceus ATCC 25745] gi|116103282|gb|ABJ68425.1| Pseudouridylate synthase [Pediococcus pentosaceus ATCC 25745] Length = 248 Score = 269 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 +RY +I+ Y+G+ + G+Q Q N +++G +++ + + + V+G+GRTD+GVHAL Sbjct: 1 MRYKIILAYDGTNFAGFQMQPNQRTVEGVLKRIVNKIAKNPTPEISVYGSGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL E + ALN+ L + + + IVD+ FHARF+ + Y YR+ Sbjct: 61 GQVVHFDLSIEMSERSMLHALNSQL--PLDMQVKKVEIVDETFHARFTTHGKKYQYRMAL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 Q ++ ++ ++ A + L G HDF++F + +RTI V Sbjct: 119 GQFVDPFKRNYTGHWKFPINIGLIQKAIKDLEGTHDFSSFVASGSTVKDHVRTIYEAKVW 178 Query: 179 SFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N I FL+ +R V L +G + + D+ + + +DR + AP Sbjct: 179 EDKKQNEIVFEFYGNGFLYNMVRIMVAVLVEIGSKRRPADDIPRLFEVKDRNQARGTAPA 238 Query: 237 EGLYFDSVEY 246 GLY V+Y Sbjct: 239 SGLYLKEVDY 248 >gi|166367993|ref|YP_001660266.1| tRNA pseudouridine synthase A [Microcystis aeruginosa NIES-843] gi|166090366|dbj|BAG05074.1| tRNA pseudouridine synthase 1 [Microcystis aeruginosa NIES-843] Length = 276 Score = 269 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 118/245 (48%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ + S+Q IEKA+ + G V +HGAGRTDSGVHA QVA Sbjct: 8 RIALVIQYVGTNFHGWQRQPDHRSVQEEIEKALADILGHDVTLHGAGRTDSGVHAAAQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ P K LNA L D I I V ++HARFSA+ R Y Y + T P Sbjct: 68 HFEQQSPIPPSHWAKVLNARL--DDDIVIRASGRVPDRWHARFSALWRRYRYTLYTDPIP 125 Query: 123 LALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W + LD + M A + L+G+H F + + + G Sbjct: 126 NLFVSPFSWHYYHRPLDADVMARALKPLLGKHHLAAFHRANSSRDHSWVEVQGVECYRQG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + A FL+ +R VG L VG G+ + + Q R+ AP +GL Sbjct: 186 PFVQMEIQANGFLYGMVRLLVGMLVEVGTGERSLENFTDIWVNQRRELVKYAAPAKGLCL 245 Query: 242 DSVEY 246 V Y Sbjct: 246 LRVGY 250 >gi|86141215|ref|ZP_01059761.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] gi|85831774|gb|EAQ50229.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] Length = 263 Score = 269 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + I Y+G+ Y GWQRQ ++Q +E+A+ + V V GAGRTD+GVHA + A Sbjct: 11 RYFIEIAYDGTSYHGWQRQPQSITVQEVLEEALSTLLRSEVPVVGAGRTDAGVHATQLFA 70 Query: 63 HFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF++ + L + + +++ L V + HARF A+RRSY Y+I + Sbjct: 71 HFEIEESYSFEALSHLKFRLNRFLPEAVAVNALLPVSAEAHARFDAVRRSYEYKIHMVKN 130 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +++ K L+ + M AA L+GR DF F + I I + G Sbjct: 131 P--FLVNQSYYFEKPLNVDAMNEAAAFLLGRQDFKCFSRSKTDVKTYICEITEARWDQDG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ + A FL +R+ VG+L +G GK L+ + ++ R E G AP GLY Sbjct: 189 AQLKFSISADRFLRNMVRAIVGTLLEIGQGKLKPAALKTIIASRTRSEAGASAPAHGLYL 248 Query: 242 DSVEYS 247 V Y Sbjct: 249 TEVAYP 254 >gi|319763817|ref|YP_004127754.1| tRNA pseudouridine synthase a [Alicycliphilus denitrificans BC] gi|330823919|ref|YP_004387222.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans K601] gi|317118378|gb|ADV00867.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans BC] gi|329309291|gb|AEB83706.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans K601] Length = 272 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 14/257 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGQAYSGWQSQPSGNTVQDHLEAALGRFATQKVATICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FHAR A+ R Y Y ++ Sbjct: 61 VHFDTGLQRAPFSWVRGTNTFL--PPDIAVQWAQPVPDAFHARACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + LD + M+ A QHL+G HDF++FR+ CQA SP++T+ + G Sbjct: 119 RPSVEAGRVGWVFHELDGQAMQDAVQHLLGEHDFSSFRASACQAKSPVKTLHRIAITRRG 178 Query: 182 N------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 +FLH IR+ +G + +G G + + + L A+ R Sbjct: 179 PANGPSLHGCAPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPQWMRQVLDARSRDA 238 Query: 230 CGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 AAPTFSPDGLYFLGPVY 255 >gi|104773573|ref|YP_618553.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422654|emb|CAI97262.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 263 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 85/253 (33%), Positives = 136/253 (53%), Gaps = 8/253 (3%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHA 57 M+ RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH+ Sbjct: 1 MMTSRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHS 60 Query: 58 LRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 + QV HFD RE + KALN+ L + + IVDK FH+RFS + Y YR+ Sbjct: 61 VGQVIHFDYPGREIPAANMIKALNSQL--PMDMVFTDCEIVDKDFHSRFSVKGKWYRYRV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + + Sbjct: 119 SLDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVN 178 Query: 177 V--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V + N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A Sbjct: 179 VALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTA 238 Query: 235 PPEGLYFDSVEYS 247 GLY V Y Sbjct: 239 QACGLYLYHVFYE 251 >gi|260438877|ref|ZP_05792693.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] gi|292808716|gb|EFF67921.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] Length = 249 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 + I ++G+ YFGW+ Q N +IQG IE + + + ++ V G GRTD+GVHA Sbjct: 3 QNFKFKIMFDGTRYFGWEHQPNTDLTIQGKIETVLQRMVSSEKVPEVIGCGRTDAGVHAK 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 +A+ L + + +N YL D I +L + ++FH+R+ A+ ++Y Y T Sbjct: 63 AMIANAFLETDMSTDAIRDYMNRYL--PDDICVLEVKEAAERFHSRYKAVGKTYCYTCYT 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ + I ++ D M AA+ L+G HD+ +F S S +R +D + Sbjct: 121 GPLKPVFDRKYVYYIEETPDIGKMEEAAKLLIGIHDYASFCSNPKMKKSTVREVDSIQII 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I FL +R G+L VG GK + + + +A+DR G AP G Sbjct: 181 KKGQYIRFTYHGTGFLQHMVRILTGTLLEVGFGKRDVSSIPELFEAKDRSLAGFTAPASG 240 Query: 239 LYFDSVEYS 247 L V+Y+ Sbjct: 241 LCMMQVDYN 249 >gi|160947056|ref|ZP_02094223.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270] gi|158446190|gb|EDP23185.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270] Length = 247 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS +FG+Q+QKN ++QG IE A+ +T E + + AGRTD GVH+LR Sbjct: 1 MRNIMLTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITEENINIISAGRTDRGVHSLRH 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + ALN +L + +L+ V + FH+RF A ++Y Y + + Sbjct: 61 IINFHTESNVGVLNFKTALNHFL--PIGVRVLDSKEVSENFHSRFDAKMKTYKYILNLDE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD E M+ A ++ +GR F F +PIR I+ F++ Sbjct: 119 VMDPIYYNYKANFPYPLDIEKMKRAKEYFIGRKSFKAFMGPRTGNINPIREINSFEIYKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + + +SF+ Q+R VG+L +G G +LE+ L ++DR G P GLY Sbjct: 179 NNDLIFLIKGQSFIRNQVRIMVGTLVDIGRGLIEEDELERILDSEDRTRAGVTLSPNGLY 238 Query: 241 FDSVEYS 247 + Y Sbjct: 239 LMEILYD 245 >gi|299541963|ref|ZP_07052286.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1] gi|298725701|gb|EFI66342.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1] Length = 246 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q +E+ + ++ GE V V +GRTD+ VHA Sbjct: 1 MRRLKVIISYDGTLFSGYQVQPGERTVQAELERVLAIMHKGEQVKVTASGRTDAKVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN L I +L++ V FHAR+ + Y Y Sbjct: 61 QTLHFDTSLAIPAEKYRKALNVQL--PRDIRVLSVEEVAHDFHARYDVAGKRYRYIWSCE 118 Query: 120 QAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + E M+ AA+ + G HDF+ F + + +RT+ Sbjct: 119 PIQSPFRRYYTVETNGVKPNVEAMQEAAKAITGTHDFSCFCAANTSVKDKVRTVTLLQFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + + FL+ +R G+L VG G+ ++ + + + +R + G APP+G Sbjct: 179 WHGEELHMVIEGNGFLYNMVRIIAGTLWEVGIGRRKVDNVSQVVASGNRDKAGKTAPPQG 238 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 239 LYLEKVFY 246 >gi|302388052|ref|YP_003823874.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] gi|302198680|gb|ADL06251.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] Length = 341 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R MI+ Y+G+ Y GWQ Q NG +I+ + K + + E + V GA RTDSGVH+ Sbjct: 1 MKRVKMIVAYDGTNYCGWQIQNNGITIEEVLNKELTSLLKEPITVIGASRTDSGVHSEGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN L D I IL V +H R ++Y Y+I+ R+ Sbjct: 61 VAVFDTENRMPADKICFALNQRL--PDDIRILQSQEVRPDYHPRKQNCVKTYEYKIMNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + ++ LD E MR +LVG HDF +F + QA +RTI D+ Sbjct: 119 IEVPTLRLYSYFCYFPLDVERMREGGAYLVGEHDFKSFCTARGQAEETVRTIYSLDIEKS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI IR+ FL+ +R G+L VG G + + +E+ L A+DRK GP A +GL Sbjct: 179 GDLITIRIKGSGFLYNMVRIIAGTLMKVGMGVYPPSHVEEILDARDRKAAGPKAAAKGLT 238 Query: 241 FDSVEYS 247 S++Y Sbjct: 239 LVSLDYE 245 >gi|226951929|ref|ZP_03822393.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ATCC 27244] gi|294649190|ref|ZP_06726629.1| tRNA pseudouridine synthase A [Acinetobacter haemolyticus ATCC 19194] gi|226837469|gb|EEH69852.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ATCC 27244] gi|292824908|gb|EFF83672.1| tRNA pseudouridine synthase A [Acinetobacter haemolyticus ATCC 19194] Length = 265 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G+ Y GWQ +Q +S+Q +IEK + + +++HGAGRTD+GVHA Sbjct: 1 MQRYAIGIEFCGTQYRGWQTQQAGVASVQETIEKVLSTIADHPIILHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L IS+ + +D+ FHARF A R Y Y + Sbjct: 61 MVAHFDTTAIRPDRGWLMGTNSQL--PKDISLQWIKRMDESFHARFKARARRYRYIVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + ++LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PTRPALLYKQVTHLYQTLDVQKMIAAAAKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ AQDRK G AP +GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDHMFAAQDRKAAGITAPADGL 238 Query: 240 YFDSVEYS 247 YF EY Sbjct: 239 YFIQAEYP 246 >gi|326692205|ref|ZP_08229210.1| tRNA pseudouridine synthase A [Leuconostoc argentinum KCTC 3773] Length = 261 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 126/257 (49%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTD 52 M RY ++ Y+GS +FG+Q Q + ++QG + +A+ + + V GA RTD Sbjct: 1 MPRYKAVVAYDGSEFFGFQVQTKNGVERQRTVQGELNRAVNQMAKLPTPAIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + P + K LN L I I + V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFDIQPEGVRKGLNTLL--PRDIMIKQVEKVADDFHARFNTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T+ ++ LD ++ A L+G HDF +F + Q ++ +RTI Sbjct: 119 IYRVSTQDFTDPFKRRYTGHFHWRLDVARIQAALPDLLGEHDFASFAASGNQTATTVRTI 178 Query: 173 DHFDVN--SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 DV + +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 179 TRADVEVKPDEQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIVRLIAVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D + Y Sbjct: 239 RFTAPASGLYLDEIYYD 255 >gi|288802284|ref|ZP_06407724.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18] gi|288335251|gb|EFC73686.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18] Length = 253 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 115/257 (44%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E A+ + E + + GAGRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHALSTILRESIAITGAGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L +N L +S+ + V + HARFSA R+Y Y + T + Sbjct: 61 VAHFDTELSFDSAQLVYKVNRLL--PRDVSVSRIEPVGEDLHARFSATSRTYHYYVHTGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + +LD + M AA +L+G DF F + I + Sbjct: 119 QP--FSRQYSCEFRYALDFDKMNEAAAYLIGEKDFKCFCKTGADVKTTICNLTEARWIPA 176 Query: 181 GNL-----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +R+ VG+L VG G+ + D +K + R + Sbjct: 177 NEEFALTTDNTVTNWCFVITANRFLRNMVRAVVGTLVEVGRGRLSLDDFKKIVDGGTRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ V+Y Sbjct: 237 AGESMPGNALFLWEVKY 253 >gi|327314538|ref|YP_004329975.1| tRNA pseudouridine synthase A [Prevotella denticola F0289] gi|326944120|gb|AEA20005.1| tRNA pseudouridine synthase A [Prevotella denticola F0289] Length = 255 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 118/257 (45%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T + Sbjct: 63 VAHFDTAQPFDSEQLVYKMNRLL--PRDVSVSRIKAVSADLHARFSAVSRTYHYYIHTGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + I LD + M AA +L+G DF F + + Sbjct: 121 QP--FSRRYSCEIHYPLDFDKMNEAASYLIGEKDFKCFCKAGADVKTTFCNLTEARWIPS 178 Query: 181 GN-----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 G+ + A FL +R+ VG+L VG G+ + D + + R + Sbjct: 179 GDGLSLSSGGTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADFRQIVDGGTRSD 238 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ ++Y Sbjct: 239 AGESMPGNALFLWDIKY 255 >gi|291296648|ref|YP_003508046.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279] gi|290471607|gb|ADD29026.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279] Length = 263 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 125/250 (50%), Gaps = 9/250 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY+GSG+ G Q Q G ++Q +E A+ + G + GRTD+GVHAL Sbjct: 13 RRILLTLEYDGSGFAGLQTQAQGERTVQQELEAALSQIPGARPKIWPCGRTDAGVHALAM 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H+D + + ALN L I L V FHAR S R Y YRI+ R+ Sbjct: 73 PVHYDTLDNIPTEKIPHALNTLL--PPDIRALAAQEVPADFHARKSCHWREYRYRILQRR 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 P AL++ R W IP SL+ MR A + LVG HDF F + + +R I + Sbjct: 131 MPPALDRHRVWWIPHSLNLIPMRHALECLVGTHDFKAF--AVKEERATVREIYRAHLEVW 188 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I I V FL Q+RS VG+L +G GK S+ ++ L + RK+ GP AP Sbjct: 189 PTEGGREIWIEFVGSGFLRGQVRSMVGTLVEIGLGKRDSSSIQSLLASGSRKDAGPTAPA 248 Query: 237 EGLYFDSVEY 246 +GLYF Y Sbjct: 249 QGLYFVRAGY 258 >gi|123966948|ref|YP_001012029.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9515] gi|166228749|sp|A2BYR1|TRUA_PROM5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123201314|gb|ABM72922.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9515] Length = 268 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS + GWQRQKN S+Q IE A+F V+ +++ AGRTDSGVHA Q Sbjct: 1 MKRVALLVQYDGSYFSGWQRQKNAISVQEMIEDALFKVSNQMIKTFAAGRTDSGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN+ L TI IL V K +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDFVIPSDRYANVLNSRL--PSTIRILESVEVKKNWHACYSAVYRHYRYVINNSK 118 Query: 121 APLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W KSLD M A ++G HDF F+ S+ + TI ++ Sbjct: 119 IPNLFLNKWSWHRYQKSLDEFLMSKALNGMIGEHDFYAFQKSGSTRSTSVTTIKSIEIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI I + A FL+ +RS VG L LVG+ K + + + +++ AP GL Sbjct: 179 TEDLILIDIKATGFLYGMVRSIVGQLVLVGEKKISPEIFKDRWVGKKKQDVHESAPANGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNSVY 245 >gi|225872353|ref|YP_002753808.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC 51196] gi|225793375|gb|ACO33465.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC 51196] Length = 254 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 123/256 (48%), Gaps = 12/256 (4%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + + Y+G+ Y GWQ Q +IQG + A+ +TGE V+ G+GRTD+GVHAL Sbjct: 1 MPLNWKLTLAYDGTDYRGWQVQPELPTIQGELAAAVERITGERVLPQGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA F L L +ALN L I +L + + FHAR SA + Y YRI Sbjct: 61 QVASFVLKAPIPAENLHRALNRTL--PAAIRVLGAESMPEDFHARHSARSKWYEYRIFRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---------SSPIR 170 + + + LD E MR AA VG HDF +F + S +R Sbjct: 119 EVCPPWTARYVYALHWPLDVEAMRRAAAAFVGEHDFRSFAASDPDVAARGSEDAEESHVR 178 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 TI +L+ RV FLH +R+ VG++ VG ++ + D+ L +DR Sbjct: 179 TIFASGWAEEDDLLIYRVHGNGFLHHMVRNLVGTMIGVGRRQFDAEDMPGLLALRDRSAA 238 Query: 231 GPLAPPEGLYFDSVEY 246 G AP GL+ SV Y Sbjct: 239 GATAPARGLFLYSVCY 254 >gi|148556941|ref|YP_001264523.1| tRNA pseudouridine synthase A [Sphingomonas wittichii RW1] gi|166229840|sp|A5VDL9|TRUA_SPHWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148502131|gb|ABQ70385.1| tRNA pseudouridine synthase A [Sphingomonas wittichii RW1] Length = 254 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 159/247 (64%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G + GWQRQ +G S+Q +IE+AI VTGE V+H AGRTD+ VH Sbjct: 1 MTRFRLTVEFDGRPFMGWQRQAHGPSVQQAIEEAITAVTGERAVIHAAGRTDARVHGRAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +ALNA L+ ++IL V +HARFS + R Y+YRI+ R+ Sbjct: 61 TAHADIAKPITPFRLKEALNARLR-PAPVAILACEPVAGDWHARFSCVGRRYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + G AW + LD + M AAQ LVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTFDAGLAWQVAADLDDQAMHAAAQCLVGRHDFTTFRSAHCQAESPVKTLDRLDVRRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LIEI ARSFLH Q+RS VG L LVG G+WT+ DL AL A DR G APP+GLY Sbjct: 180 GELIEIEAAARSFLHHQVRSMVGCLALVGRGRWTAADLADALAAADRARLGLNAPPDGLY 239 Query: 241 FDSVEYS 247 F Y Sbjct: 240 FMEAVYP 246 >gi|303237649|ref|ZP_07324209.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN] gi|302482101|gb|EFL45136.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN] Length = 255 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 116/258 (44%), Gaps = 15/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG S+Q +EKA+ + + V GAGRTD+GVHA Sbjct: 1 MQRYFIKFSYDGTNYHGWQIQPNGISVQEVLEKALSTLLRTKMSVTGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD L LN L +S++++ V+ + HARFSA R+Y Y + + Sbjct: 61 VAHFDWEAPIDGQQLAYKLNRML--PRDVSVISVEAVENELHARFSATSRTYHYYM--HR 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 + ++ +P LD E M AA++L+G DF F + I + Sbjct: 117 GRNPFSRAYSYEMPYELDFERMNEAAKYLIGERDFKCFCKAGGDNKTTICNLTEARWQHC 176 Query: 179 ---------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +R+ VG+L VG G+ T + K + R + Sbjct: 177 NTEIAIHEAEKAEEWCFVITANRFLRNMVRAVVGTLVEVGRGRITIDEFRKIVDNGTRSD 236 Query: 230 CGPLAPPEGLYFDSVEYS 247 G P L+ V Y Sbjct: 237 AGESMPGNALFLWDVTYP 254 >gi|212694471|ref|ZP_03302599.1| hypothetical protein BACDOR_03999 [Bacteroides dorei DSM 17855] gi|265750782|ref|ZP_06086845.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_33FAA] gi|212662972|gb|EEB23546.1| hypothetical protein BACDOR_03999 [Bacteroides dorei DSM 17855] gi|263237678|gb|EEZ23128.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_33FAA] Length = 257 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A + + V GAGRTD+GVHA V Sbjct: 1 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRAFSTFLRQEIEVVGAGRTDAGVHARLMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E V + + LN L I++ ++ V HARF A R+Y Y + R+ Sbjct: 61 AHFDYDQELDCVQITEKLNRLL--PSDIAVYDVKRVKDDAHARFDATYRTYKYYVTIRK- 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 + AW + SLD E M AA+ L DFT+F +H + I + + Sbjct: 118 -DPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMYAEWTRVS 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T K ++ +DR G P L+ Sbjct: 177 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTLDGFRKVIENKDRCSAGSSVPGHALF 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LVDVGYP 243 >gi|153874369|ref|ZP_02002618.1| tRNA pseudouridine synthase A [Beggiatoa sp. PS] gi|152069168|gb|EDN67383.1| tRNA pseudouridine synthase A [Beggiatoa sp. PS] Length = 272 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ +FGWQ Q + S+QG +E A+ V V V AGRTD+GVHA+ QV Sbjct: 1 MRIALGVEYNGANFFGWQFQPHARSVQGEVEIALSKVANHPVKVICAGRTDTGVHAIGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ + N+ L +S+L VD FHARFSA R Y Y I+ R Sbjct: 61 IHADVTVQRSTRSWVLGTNSNL--PIDVSMLWAQSVDNNFHARFSAQARHYRYIILNRPT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + + L+ E M+IA +L+G HDF + +PIRTI V+ Sbjct: 119 RPALLTKQVTWERRILEVERMQIAGNYLIGTHDFHLIVPFPVKQKTPIRTISRLMVSRMD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G G+ + L+AQDR G AP GLYF Sbjct: 179 DRVIIDISANAFLHHMVRNIAGVLITIGAGEKRPKWADTVLEAQDRTMGGITAPAAGLYF 238 Query: 242 DSVEYS 247 ++Y Sbjct: 239 CGIDYP 244 >gi|291551097|emb|CBL27359.1| pseudouridylate synthase I [Ruminococcus torques L2-14] Length = 244 Score = 268 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ N +++QG++E+ I V G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTAYQGWQRQANTENTLQGTLERTISSVAGYPVEIDGSGRTDAGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + +N+ L + I IL+ +V FHAR SA+ + Y+Y++ Sbjct: 61 QTATVVLSGRVEDGFFTEKINSRL--PEDIRILDAELVRNGFHARKSAVGKKYIYQLDLA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD + MR AAQ L+G ++F + + S RTI + Sbjct: 119 EKPDVFTRRYTYHFPQRLDLDAMRKAAQLLIGTYEFAGYTDKKDE-KSTKRTIYAIMICG 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I+ FL+ +R G+L VG G + +++ L+++DR + G LAP GL Sbjct: 178 QGSKVSIQYEGTGFLYHMVRILTGTLLEVGTGARSIESVKEPLKSKDRSQAGFLAPARGL 237 Query: 240 YFDSVEY 246 + D V Y Sbjct: 238 FLDEVYY 244 >gi|333029910|ref|ZP_08457971.1| tRNA pseudouridine synthase A [Bacteroides coprosuis DSM 18011] gi|332740507|gb|EGJ70989.1| tRNA pseudouridine synthase A [Bacteroides coprosuis DSM 18011] Length = 260 Score = 268 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 129/246 (52%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+GS Y GWQ Q NGSS+Q + A+ + + + V GAGRTD+GVHA + +A Sbjct: 13 RYFIYLSYDGSNYHGWQIQPNGSSVQECLMDALKMFLRKEIEVVGAGRTDAGVHAKQMIA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD R+ +C LN L I+I + V+K+ HARF A R+Y Y I TR+ Sbjct: 73 HFDFERKLDVDKVCDKLNRIL--PHDIAIHKVIEVNKEAHARFDATARTYQYYITTRK-- 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + A+ + +SLD M AAQ L DFT+F +H + + TI + Sbjct: 129 DPFRRNYAYRLYQSLDILKMNEAAQILFEFEDFTSFSKLHSDTRTNLCTIMQAEWTEVDE 188 Query: 183 L-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG GK + + K ++ QDR G P + L+ Sbjct: 189 HTLVFTIQANRFLRNMVRAIVGTLIEVGRGKISLEEFRKIIEEQDRGLAGASVPGQALFL 248 Query: 242 DSVEYS 247 +VEY Sbjct: 249 IAVEYP 254 >gi|220906745|ref|YP_002482056.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7425] gi|219863356|gb|ACL43695.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7425] Length = 282 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 120/246 (48%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ ++GWQRQ + S+Q +E+AI +V G V VHGAGRTD+GVHA QV Sbjct: 11 QRIALVIQYLGTHFYGWQRQPHHRSVQEELEQAIAIVVGHPVTVHGAGRTDTGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P + LN L + I + VD +H+RFSA+ R Y Y + T Sbjct: 71 AHFDTDSVIPPHRWAEILNNRL--PQDVLIRASAGVDSSWHSRFSALWRRYRYTLYTDCR 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P K W + LD E M+ A L+GRH F + + G Sbjct: 129 PNLFLKSFTWHYYRPLDTELMQTALNPLLGRHHLAAFHRSKSGRKHSWVEVQVAECVRRG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+EI V A FL+ +R VG L VG G+ + + Q Q R + AP GL Sbjct: 189 SLVEIEVQASGFLYGMMRLLVGMLVQVGTGERSLASFTQIWQKQQRDQVKYAAPARGLCL 248 Query: 242 DSVEYS 247 V Y Sbjct: 249 LRVGYD 254 >gi|302038272|ref|YP_003798594.1| tRNA pseudouridine synthase A [Candidatus Nitrospira defluvii] gi|300606336|emb|CBK42669.1| tRNA pseudouridine synthase A [Candidatus Nitrospira defluvii] Length = 253 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++EY+G+ Y GWQRQ N +IQ ++E+A+ + + + GAGRTD+GVHA Q Sbjct: 1 MTTFKLVLEYDGTQYAGWQRQPNAPTIQAAVEEALAAIAQTRLTIIGAGRTDAGVHAFGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F R +ALNA+L IS L++ V FHAR+SA + Y Y ++ R Sbjct: 61 VASFRTDRGLSQREWLRALNAHL--PADISALSVKAVPDHFHARYSANGKLYEYHLMNRS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + RAW++ K LD M AA +L G HDF++F + +P + D+ Sbjct: 119 ERAPLLRERAWMLYKPLDFAAMTEAAAYLTGSHDFSSFETAPTDNENPQCRLQRADLRRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI + A FL +RS VG+L VG GK T+ D+ L A+ R G AP GLY Sbjct: 179 GDLIILSFYADRFLKQMVRSMVGTLVEVGQGKRTAADMRTVLAARARAAAGRTAPAHGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LVRVDY 244 >gi|237711190|ref|ZP_04541671.1| tRNA pseudouridine synthase A [Bacteroides sp. 9_1_42FAA] gi|237727555|ref|ZP_04558036.1| tRNA pseudouridine synthase A [Bacteroides sp. D4] gi|229434411|gb|EEO44488.1| tRNA pseudouridine synthase A [Bacteroides dorei 5_1_36/D4] gi|229455034|gb|EEO60755.1| tRNA pseudouridine synthase A [Bacteroides sp. 9_1_42FAA] Length = 267 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A + + V GAGRTD+GVHA V Sbjct: 11 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRAFSTFLRQEIEVVGAGRTDAGVHARLMV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E V + + LN L I++ ++ V HARF A R+Y Y + R+ Sbjct: 71 AHFDYDQELDCVQITEKLNRLL--PSDIAVYDVKRVKDDAHARFDATYRTYKYYVTIRK- 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 + AW + SLD E M AA+ L DFT+F +H + I + + Sbjct: 128 -DPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMYAEWTRVS 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T K ++ +DR G P L+ Sbjct: 187 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTLDGFRKVIENKDRCSAGSSVPGHALF 246 Query: 241 FDSVEYS 247 V Y Sbjct: 247 LVDVGYP 253 >gi|260592560|ref|ZP_05858018.1| tRNA pseudouridine synthase A [Prevotella veroralis F0319] gi|260535606|gb|EEX18223.1| tRNA pseudouridine synthase A [Prevotella veroralis F0319] Length = 253 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 114/257 (44%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ + E V + G GRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSTLLREEVSITGGGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L LN L +S+ + V + HARFSA R+Y Y + T + Sbjct: 61 VAHFDTDKTIACQQLVYKLNRLL--PRDVSVSQIVPVSEDLHARFSATSRTYHYYVHTTK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + I LD + M AA +L+G DF F + I + Sbjct: 119 QP--FSRQYSCEIHYPLDFDKMNEAADYLIGEKDFKCFCKTGADVKTTICNLTEARWIPC 176 Query: 181 GNL-----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +RS VG+L VG G+ + + + + R + Sbjct: 177 KAEQALVTSDRITNWCFVISANRFLRNMVRSVVGTLVDVGRGRLSLEEFQAIVNNGSRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ ++Y Sbjct: 237 AGESMPGNALFLWDIKY 253 >gi|320530646|ref|ZP_08031695.1| tRNA pseudouridine synthase A [Selenomonas artemidis F0399] gi|320137097|gb|EFW29030.1| tRNA pseudouridine synthase A [Selenomonas artemidis F0399] Length = 258 Score = 267 bits (684), Expect = 8e-70, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y+G+ Y G+QRQ ++Q +EK + V GE V + AGRTD+GVHA Q Sbjct: 6 RNIALRLSYDGTRYHGFQRQSLPVVAVQNVLEKVLAEVCGEPVELAAAGRTDTGVHAYGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F L +A+N L I+++ + F AR S+ ++YLYRI Sbjct: 66 VVNFFTDGRIPVAQLPRAVNGLL--PPDIAVMAAWEAGRDFSARHSSTGKAYLYRIERCT 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 P + AW I + LD MR + LVG HD+++FR+ SP+RT+D + Sbjct: 124 VPNPFTRNYAWQIFRPLDVAAMRTVLRLLVGTHDYSSFRAAGGAPMSPVRTLDEIRLDEE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + FL+ +R+ + ++ VG G+ ++ + A DR+ P AP GL Sbjct: 184 EGGQLSCYMHGNGFLYHMVRNIMSTVVHVGLGRISTDRFTEIFAAHDRRLASPTAPACGL 243 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 244 YLLHVDY 250 >gi|67923564|ref|ZP_00517037.1| tRNA pseudouridine synthase [Crocosphaera watsonii WH 8501] gi|67854590|gb|EAM49876.1| tRNA pseudouridine synthase [Crocosphaera watsonii WH 8501] Length = 285 Score = 267 bits (684), Expect = 9e-70, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 113/246 (45%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y GS + GWQRQ N ++Q IE AI V G +HGAGRTD+GVHA QVA Sbjct: 12 RVALVIQYQGSRFHGWQRQPNQRTVQEDIETAIAQVLGYHTPIHGAGRTDAGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD V P LN L + I I V +HARFSA+ R Y Y T + P Sbjct: 72 HFDYVSPIPPQRWADILNHRL--PEDILIRGSQGVPATWHARFSALWRRYRYSFYTDKCP 129 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K +W L+ E M+ A L+G+H FR + G Sbjct: 130 NLFVKPFSWHYYYEPLNVELMQKALNPLLGKHHLAAFRRAGSHRHHSWVEVQDTQCYRQG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R VG L VG GK + + Q Q R+ AP +GL Sbjct: 190 PFIHLEIQANGFLYGMVRLLVGMLVEVGSGKRSLHNFTDIWQNQRRELVKYSAPAKGLCL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 LRVGYP 255 >gi|242277723|ref|YP_002989852.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638] gi|259550311|sp|C6BW69|TRUA_DESAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|242120617|gb|ACS78313.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638] Length = 271 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ + GWQ Q ++QG +EKAI +TG V VHG+GRTDSGVHAL Q Sbjct: 1 MQRIKLIIAYDGTNFCGWQLQPKLRTVQGDLEKAITRITGTTVRVHGSGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ + V +ALN+ L D ++IL+ +V +FH+R+SAIR++Y Y + Sbjct: 61 VAHFDVDSCFASVKWQRALNSLL--PDDVTILDAQLVSPEFHSRYSAIRKTYTYTLWLEN 118 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + W LD + Q+ +G HDF++F++ + S +RTI F Sbjct: 119 SFFLPWRRHYVWKC-GPLDFCALDQGMQYFLGEHDFSSFQNTGTEIKSTVRTIHEFKRYP 177 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + V FL +R+ VG L +G GK + LQ +DR AP + Sbjct: 178 GQTEQEMILEVCGSGFLKQMVRNMVGCLVRIGRGKAEPETVRSLLQMKDRTAAPATAPAQ 237 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 238 GLCMAGVYY 246 >gi|313123140|ref|YP_004033399.1| tRNA pseudouridine synthase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279703|gb|ADQ60422.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684750|gb|EGD26904.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 262 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 135/252 (53%), Gaps = 7/252 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHAL 58 M RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ Sbjct: 1 MTSRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKRMTKGQEVRVFGSGRTDAGVHSV 60 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFD RE + KALN+ L + + IVDK FH+RFS + Y YR+ Sbjct: 61 GQVIHFDYPGREIPAANMIKALNSQL--PMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V Sbjct: 119 LDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A Sbjct: 179 ALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQ 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 ACGLYLYHVFYE 250 >gi|319787538|ref|YP_004147013.1| tRNA pseudouridine synthase A [Pseudoxanthomonas suwonensis 11-1] gi|317466050|gb|ADV27782.1| tRNA pseudouridine synthase A [Pseudoxanthomonas suwonensis 11-1] Length = 257 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 130/248 (52%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR-QKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+G G+ GWQ +G ++Q ++E+A+ V + + V AGRTD+GVHA Sbjct: 1 MRYALGVEYDGGGFQGWQGLGPSGPSTVQATLERALSSVADQAITVSCAGRTDAGVHAEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E P L ++ T+ + VD FHARFSA R Y Y ++ R Sbjct: 61 QVVHFDSTAERDPRAWT--LGVTGRLPPTVCVRWCMPVDDAFHARFSARARRYRYTLVNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + LD + M AAQ L+G +DF+ FR++HCQA R + V Sbjct: 119 PVRPALYRSTMAWERRPLDADAMHRAAQALLGENDFSAFRTVHCQAPHARRNLQDIQVRR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I V A +FLH +R+ VGSL VG G + + L +DR GP A P+GL Sbjct: 179 SGETVSIEVQANAFLHHMVRNIVGSLLEVGAGARDEGWIARLLAGRDRTLAGPTAAPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFLRPLYP 246 >gi|241765867|ref|ZP_04763802.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN] gi|241364216|gb|EER59401.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN] Length = 289 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 125/257 (48%), Gaps = 14/257 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + YNG Y GWQ Q +G+++Q +E A+ T + V AGRTD+GVH L QV Sbjct: 18 TRVALGVSYNGQRYNGWQSQPSGNTVQDHLEAALGRFTTQQVSTLCAGRTDAGVHGLMQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA+L I++ V FHAR SA+ R Y Y ++ Sbjct: 78 VHFDTTLVRPDASWVRGTNAFL--PQDIAVQWARAVPSGFHARASAVARRYAYVLLQSPV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + +L+ + MR AA L+G HDFT+FR+ CQA SP++T+ D+ Sbjct: 136 RPSVEAGRVGWVFNALNEDAMRQAALRLLGEHDFTSFRASACQAKSPVKTLQRIDITRTP 195 Query: 182 ------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A +FLH IR+ +GSL VG G + + + L A R Sbjct: 196 CPRASAAGEFDACYWRFEFEANAFLHHMIRNIMGSLVAVGKGTKPPSWISEVLDAHSRDA 255 Query: 230 CGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 256 AAPTFSPDGLYFQGPVY 272 >gi|269798518|ref|YP_003312418.1| tRNA pseudouridine synthase A [Veillonella parvula DSM 2008] gi|269095147|gb|ACZ25138.1| tRNA pseudouridine synthase A [Veillonella parvula DSM 2008] Length = 261 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q N ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIQIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I ++ + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGTIPVENIPRAMIAH--IPKDIVVIEAIEIPLDWKPRWNIYGKEYVYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L + W + K LD + M+ A LVG HDFTT + + + P++TI V Sbjct: 119 QLIADPLTQRYHWHVKKPLDIDRMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +G Sbjct: 179 ARGSQVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQG 238 Query: 239 LYFDSVEY 246 L + + + Sbjct: 239 LCLEEIFF 246 >gi|264677138|ref|YP_003277044.1| tRNA pseudouridine synthase A [Comamonas testosteroni CNB-2] gi|299530680|ref|ZP_07044095.1| tRNA pseudouridine synthase A [Comamonas testosteroni S44] gi|262207650|gb|ACY31748.1| tRNA pseudouridine synthase A [Comamonas testosteroni CNB-2] gi|298721196|gb|EFI62138.1| tRNA pseudouridine synthase A [Comamonas testosteroni S44] Length = 276 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 84/262 (32%), Positives = 130/262 (49%), Gaps = 18/262 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTDSGVH L QV Sbjct: 1 MRIALGVSYNGQAYRGWQSQPDGNTVQDKLEAALGRFAAQEVSTICAGRTDSGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIV---DKQFHARFSAIRRSYLYRIIT 118 HFD + P + N +L I++ + V FH+R A R Y Y ++ Sbjct: 61 VHFDTELQRAPNSWVRGTNTFL--PKDIAVQWAAEVADGPNGFHSRACATARRYAYVLLQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +++ GR + ++LD + MR AA L+G HDF++FR+ CQA SP++T+ D++ Sbjct: 119 SPVRPSVDHGRVGWVFQALDAQRMRAAADLLLGEHDFSSFRAAGCQAKSPVKTLRRIDIH 178 Query: 179 ---------SFGNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 G + +FLH IR+ +G L VG G +++ L+A+ Sbjct: 179 YRPAGQAPMRDGQMECGYWRFEFEGSAFLHHMIRNIMGCLIYVGQGSKPVEWMQQVLEAR 238 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R+ P P+GLYF Y Sbjct: 239 SREVAAPTFSPDGLYFLGPIYD 260 >gi|116513570|ref|YP_812476.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275660|sp|Q04BY4|TRUA_LACDB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116092885|gb|ABJ58038.1| Pseudouridylate synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125205|gb|ADY84535.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 262 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 135/252 (53%), Gaps = 7/252 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHAL 58 M RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ Sbjct: 1 MTSRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHSV 60 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFD RE + KALN+ L + + IVDK FH+RFS + Y YR+ Sbjct: 61 GQVIHFDYPGREIPAANMIKALNSQL--PMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V Sbjct: 119 LDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A Sbjct: 179 ALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQ 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 ACGLYLYHVFYE 250 >gi|327438309|dbj|BAK14674.1| pseudouridylate synthase [Solibacillus silvestris StLB046] Length = 249 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 121/248 (48%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+R I Y+G+G+ G+Q Q ++Q IEK + + G V + +GRTD+ VHA Sbjct: 1 MVRLKTTISYDGTGFAGYQVQPGERTVQLEIEKVLTTMQKGTQVKITASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E P KALN L I +L++ V + FHAR+ + Y Y Sbjct: 61 QVIHFDTALEIPPEKFQKALNVQL--PRDIRVLHMEQVKEDFHARYDVSGKRYRYIWDCS 118 Query: 120 QAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + E MR AA+ +VG HDF+ F + + +RT++ ++ Sbjct: 119 TVQSPFRRHYTVETGGVKPNVEAMREAAKAIVGTHDFSCFCAANTSVVDKVRTVETLELV 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + + FL+ +R G+L VG G+ ++ LEK + + DR + G AP G Sbjct: 179 WQGEELHMTISGNGFLYNMVRIIAGTLWEVGIGRREASSLEKTIASMDRAQAGKTAPAHG 238 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 239 LYLEQVFY 246 >gi|289550174|ref|YP_003471078.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis HKU09-01] gi|289179706|gb|ADC86951.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis HKU09-01] Length = 267 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q G ++Q EK + + V +H + RTD GVHAL Q Sbjct: 1 MRILVNICYQGSNFLGFQIQNQGRTVQQQFEKILKRMHRHDVRIHPSSRTDRGVHALEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + + VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELKIADSQWQYAMNSAL--PDDIYVKEVKQVDSDFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G +P+ L+ E M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 KNPFESGLKTYVPQQLNIERMNEAAQKFIGTHDFTGFCSQKTEVESKVRTLYQSEIEMTT 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R + L VG G + ++ L+ ++R AP EGLY Sbjct: 179 YGFDYIVTGSGFLYNMVRVLMAFLIEVGKGNRSPEEVTALLEQKNRDNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|328948028|ref|YP_004365365.1| tRNA pseudouridine synthase A [Treponema succinifaciens DSM 2489] gi|328448352|gb|AEB14068.1| tRNA pseudouridine synthase A [Treponema succinifaciens DSM 2489] Length = 261 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 122/257 (47%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN------GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M + + Y+G+ + GWQRQ ++QG IE A+F + V + G+GRTDSG Sbjct: 1 MTNILLTVSYDGTDFCGWQRQDKSDNGSPVRTVQGEIENALFKMLKVPVKLSGSGRTDSG 60 Query: 55 VHALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VHA Q A+F+ +ALN L I IL V+K F +RF A R Y Sbjct: 61 VHAAGQAANFESPIDTIPCENYVRALNGIL--PQDIRILKARKVEKDFSSRFCATSRLYR 118 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I T+ P A E W I + + + L G D +F + + S R ID Sbjct: 119 YFIQTKNPPFASESRYRWFISFRPEIDLLNEMCSCLRGEIDCASFAASGDSSLSTKRYID 178 Query: 174 H---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + F +L+ ++ A +FL +RS G+L + K + + +K L+++DR + Sbjct: 179 NAFFFWNKENPDLLVFQIEANAFLWKMVRSITGTLIQLAQKKCSPNEFKKILESRDRTKA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 G APP GL+ V++ Sbjct: 239 GITAPPTGLFLWEVKFD 255 >gi|158422420|ref|YP_001523712.1| tRNA pseudouridine synthase A [Azorhizobium caulinodans ORS 571] gi|172048047|sp|A8IQL3|TRUA_AZOC5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|158329309|dbj|BAF86794.1| tRNA pseudouridine synthase [Azorhizobium caulinodans ORS 571] Length = 258 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 120/247 (48%), Positives = 164/247 (66%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q ++QG + A+ +GE V GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFAGWQIQAELPTVQGVLAAAVKGFSGEEAHVAGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH L R+W P + A+ A+L+ +++ + V F ARFSA++R YLYRI+ R+ Sbjct: 61 VAHIHLARDWRPDQVRDAMTAHLRPHPV-AVVAVERVADDFDARFSAVKRHYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LAL++ RAW +P+ LD M +AAQ L+G+HDFTTFR+ CQA+SP +T+D DV Sbjct: 120 PDLALDRDRAWRVPQKLDASAMHVAAQRLLGKHDFTTFRAAECQAASPEKTLDQLDVMRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VGSL VG+G+W++ DL AL A+DR+ CGP+AP GLY Sbjct: 180 GDDIRIVTSARSFLHHQVRSMVGSLIRVGEGRWSADDLADALAARDRRRCGPMAPACGLY 239 Query: 241 FDSVEYS 247 +V Y Sbjct: 240 LAAVSYP 246 >gi|325269743|ref|ZP_08136354.1| tRNA pseudouridine synthase A [Prevotella multiformis DSM 16608] gi|324987944|gb|EGC19916.1| tRNA pseudouridine synthase A [Prevotella multiformis DSM 16608] Length = 255 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 77/257 (29%), Positives = 118/257 (45%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T + Sbjct: 63 VAHFDTAQPFDSGQLVYKMNRLL--PRDVSVSRIEAVSADLHARFSAVSRTYHYYIHTGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + I LD + M AA +L+G DF F + + F Sbjct: 121 QP--FSHRYSCEIHYPLDFDKMNEAASYLIGEKDFKCFCKAGADVKTTFCNLTEARWIPF 178 Query: 181 GN-----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 G+ + A FL +R+ VG+L VG G+ + D + + R + Sbjct: 179 GDGLSLSSGSTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADFRQIVDGGTRSD 238 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ ++Y Sbjct: 239 AGESMPGNALFLWDIKY 255 >gi|221068666|ref|ZP_03544771.1| tRNA pseudouridine synthase A [Comamonas testosteroni KF-1] gi|220713689|gb|EED69057.1| tRNA pseudouridine synthase A [Comamonas testosteroni KF-1] Length = 276 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 18/262 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTDSGVH L QV Sbjct: 1 MRIALGVSYNGQAYRGWQSQPDGNTVQDKLEAALGRFAAQEVSTICAGRTDSGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIV---DKQFHARFSAIRRSYLYRIIT 118 HFD + P + N +L I++ + V FH+R A R Y Y ++ Sbjct: 61 VHFDTGLQRTPNSWVRGTNTFL--PKDIAVQWAAEVADGPDGFHSRACATARRYAYVLLQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++++GR + ++LD + MR AA L+G HDF++FR+ CQA SP++T+ D++ Sbjct: 119 SPVRPSVDQGRVGWVFQTLDAQRMRAAADLLLGEHDFSSFRAAGCQAKSPVKTLRRIDIH 178 Query: 179 SFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +FLH IR+ +G L VG G +++ L+A+ Sbjct: 179 YRPAGQAPMRDTQMQCGYWRFEFEGSAFLHHMIRNIMGCLIYVGQGSKPVEWMQQVLEAR 238 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R+ P P+GLYF Y Sbjct: 239 SREVAAPTFSPDGLYFLGPIYD 260 >gi|307154816|ref|YP_003890200.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7822] gi|306985044|gb|ADN16925.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7822] Length = 284 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 118/247 (47%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ N ++Q IE AI V G + +HGAGRTD+GVHA QV Sbjct: 11 QRVALVIQYLGTHFHGWQRQPNRRTVQEEIETAIAQVLGYPITLHGAGRTDAGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + P LN+ L D I + V +HARFSA+ R Y Y I T + Sbjct: 71 AHFDQMSLIPPYRWATILNSRL--PDDIVVRASHKVCDTWHARFSALWRRYRYTIYTDKQ 128 Query: 122 PLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P K +W L M+ A + L+G+H F + + + Sbjct: 129 PNLFVKPFSWHYYQYPLSESLMQAALEPLLGKHHLAAFHRANSARTHSWVEVQAVQCYRS 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R +G L VG+ + + ++ + Q R+E AP +GL Sbjct: 189 GPFIHVEIQANGFLYGMVRLLMGMLIEVGNQQRSLSEFTNIWKNQRREEVKYAAPAKGLC 248 Query: 241 FDSVEYS 247 V Y Sbjct: 249 LLRVGYP 255 >gi|262277956|ref|ZP_06055749.1| tRNA pseudouridine synthase A [alpha proteobacterium HIMB114] gi|262225059|gb|EEY75518.1| tRNA pseudouridine synthase A [alpha proteobacterium HIMB114] Length = 245 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 100/246 (40%), Positives = 153/246 (62%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++EYNG+ + GWQ Q +G+++Q IEK+ + + G+GRTDSGVHA Q Sbjct: 1 MHRYKAVVEYNGTDFEGWQSQPSGNTVQQIIEKSFLEIQLNKTKIFGSGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + LN +LK + IS+L+L + F +R A R+Y Y+I+ R Sbjct: 61 VFHFDYEDKLDCKKILLGLNHFLKKKN-ISVLSLDFTNNNFDSRRDAKLRTYTYKILNRI 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + + + W + K+LD + M+ A+Q +G HDFTTFR+ C+A+SPIR I + ++ Sbjct: 120 ASPVILENQVWHVIKNLDFKLMQKASQIFLGSHDFTTFRASSCEATSPIREIIYSELKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I V +RSFL Q+RS VG++K VG+ KW+ DL++AL++++R C AP GLY Sbjct: 180 NDQIIYIVKSRSFLQHQVRSMVGAIKFVGEKKWSLKDLDEALKSKNRNNCATPAPACGLY 239 Query: 241 FDSVEY 246 ++VEY Sbjct: 240 LENVEY 245 >gi|32491058|ref|NP_871312.1| hypothetical protein WGLp309 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340463|sp|Q8D2P5|TRUA_WIGBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25166265|dbj|BAC24455.1| truA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 264 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y G+ Y GWQ QKN SIQ +E A+F +GE + ++ AGRTD+ VHAL Q Sbjct: 1 MKKLAAGISYQGNNYCGWQSQKNIISIQEYVELALFKFSGEKIKIYCAGRTDAKVHALLQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF + +N+YL ISI+ + V FHAR+SAI + YLY I Sbjct: 61 VVHFYTDIKRSYRQWILGVNSYL--PYDISIMWVIKVHNNFHARYSAIAKKYLYLIHNNI 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + + SL+ +M+ AAQ L+G+HDF++F+ CQ+ + R I + +N + Sbjct: 119 SRSGIFRKYCFNVFISLNINDMKKAAQKLIGKHDFSSFKGSECQSKTTYRVIYYIRINKY 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + A SFL+ +R+ +G+L +G GK + + + L ++ K A P+GLY Sbjct: 179 KEYIFVEIKANSFLNHMMRNIIGNLIEIGKGKKSKEWMSELLFLKNNKFSIFSADPKGLY 238 Query: 241 FDSVEYS 247 +V Y Sbjct: 239 LSNVYYP 245 >gi|33592579|ref|NP_880223.1| tRNA pseudouridine synthase A [Bordetella pertussis Tohama I] gi|42559761|sp|Q7U363|TRUA_BORPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33572225|emb|CAE41775.1| tRNA pseudouridine synthase A [Bordetella pertussis Tohama I] gi|332381997|gb|AEE66844.1| tRNA pseudouridine synthase A [Bordetella pertussis CS] Length = 270 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 136/249 (54%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q +E A+ G V AGRTD+GVHA Sbjct: 1 MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L +I + V + FHARFSA R+Y+Y + Sbjct: 61 MQVIHLDTDLQRRDESWVRGVNAFL--PPSIVVQWARPVSEAFHARFSARSRTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA + LD MR AA+ L+G HDF++FRS CQA P+RT+ D++ Sbjct: 119 GRVRPALWAGRAGWAFQPLDVPAMRAAARALLGEHDFSSFRSSQCQARHPVRTLHRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L VG G+ ++ L A+DR+ P P+G Sbjct: 179 ERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGREPVAWMDALLCARDRRLGAPTFMPDG 238 Query: 239 LYFDSVEYS 247 LY ++EY Sbjct: 239 LYLSAIEYP 247 >gi|297587193|ref|ZP_06945838.1| tRNA-pseudouridine synthase I [Finegoldia magna ATCC 53516] gi|297575174|gb|EFH93893.1| tRNA-pseudouridine synthase I [Finegoldia magna ATCC 53516] Length = 244 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA Q Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVNQPVKINGAGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +N + SD+I I+ VD FHARFSA ++Y Y + + Sbjct: 61 VCNFIVDTDISANQFLMGVNHF--TSDSIVIVKSEEVDLDFHARFSAKSKTYKYILCNKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD + + L+G+HDFT+F + + ++PIRTID + Sbjct: 119 YMEPWFNDYKGHRKYYLDFDLLLKCRDMLIGKHDFTSFVNDLEEDTNPIRTIDEITIEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GLY Sbjct: 179 DDDFVFTFKAESFLRNMVRILVGSMVDVARGRKSIEWLKNALENKDRQSAGITIEPCGLY 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LMDIEY 244 >gi|319642589|ref|ZP_07997236.1| pseudouridylate synthase [Bacteroides sp. 3_1_40A] gi|317385823|gb|EFV66755.1| pseudouridylate synthase [Bacteroides sp. 3_1_40A] Length = 251 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 119/241 (49%), Gaps = 5/241 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA +AHFD Sbjct: 1 MAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMIAHFDYD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 RE V + + LN L I++ + V HARF A R+Y Y + TR+ + Sbjct: 61 RELDCVQITEKLNRLL--PPDIAVYAVKRVKDDAHARFDATYRTYKYYVTTRK--DPFNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-FGNLIEI 186 AW + SLD E M AA+ L DFT+F +H + I H + G Sbjct: 117 HYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVSGTEWVF 176 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ V Y Sbjct: 177 TIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALFLVDVGY 236 Query: 247 S 247 Sbjct: 237 P 237 >gi|218262724|ref|ZP_03477082.1| hypothetical protein PRABACTJOHN_02761 [Parabacteroides johnsonii DSM 18315] gi|218223213|gb|EEC95863.1| hypothetical protein PRABACTJOHN_02761 [Parabacteroides johnsonii DSM 18315] Length = 292 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 119/246 (48%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA VA Sbjct: 46 RYFIYLGYNGKKFCGWQIQPNGITVQQSIEEALATLLRQPVPIVGAGRTDAGVHARLMVA 105 Query: 63 HFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ L + LN L I++ + V HARF A R+Y Y I TR+ Sbjct: 106 HFDWKEPIDDLVFLVEKLNRLL--PKDIAVYRIVPVRTDAHARFDATSRTYKYYITTRK- 162 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + IP LD E M A L DFT+F +H + I G Sbjct: 163 -DPFNYELVYKIPGKLDFEAMNKACPVLFDYIDFTSFSKLHTDVKTNNCRIYKAGWEKDG 221 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ + A FL +R+ VG+L VG GK T + ++A+DR G AP LY Sbjct: 222 DVWFFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGRAGTSAPGHALYL 281 Query: 242 DSVEYS 247 V Y Sbjct: 282 VDVTYP 287 >gi|313895792|ref|ZP_07829346.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 137 str. F0430] gi|312975217|gb|EFR40678.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y+G+ Y G+QRQ ++Q +EK + V GE V + AGRTD+GVHA Q Sbjct: 14 RNIALRLSYDGTRYHGFQRQSLPVVAVQNVLEKVLAEVCGESVELAAAGRTDTGVHAYGQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F L +A+N L I+++ ++ F AR S+ ++YLYRI Sbjct: 74 VVNFFTDGRIPVAQLPRAVNGLL--PPDIAVMAAWEAERDFSARHSSTGKAYLYRIERCT 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 P + AW I + LD MR + LVG HD+++FR+ SP+RT+D + Sbjct: 132 VPNPFTRNYAWQIFRPLDVAAMRTVLRLLVGTHDYSSFRAAGGAPMSPVRTLDEIRLDEE 191 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + FL+ +R+ + ++ VG G+ ++ + A DR+ P AP GL Sbjct: 192 EGGQLSCYMHGNGFLYHMVRNIMSTVVHVGLGRISTDRFTEIFAAHDRRLASPTAPACGL 251 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 252 YLLHVDY 258 >gi|154494877|ref|ZP_02033882.1| hypothetical protein PARMER_03921 [Parabacteroides merdae ATCC 43184] gi|154085427|gb|EDN84472.1| hypothetical protein PARMER_03921 [Parabacteroides merdae ATCC 43184] Length = 297 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 119/246 (48%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA VA Sbjct: 46 RYFIYLGYNGKKFCGWQIQPNGITVQQSIEEALATLLRQPVPIVGAGRTDAGVHARLMVA 105 Query: 63 HFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + L + LN L I++ + V HARF AI R+Y Y + TR+ Sbjct: 106 HFDWQEPIADLAFLAEKLNRLL--PKDIAVYRIVPVRPDAHARFDAISRTYKYYVTTRK- 162 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + IP LD E M A L DFT+F +H + I G Sbjct: 163 -DPFNYELVYKIPGKLDFEAMNKACSVLFDYIDFTSFSKLHTDVKTNNCRIYKAGWEREG 221 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ + A FL +R+ VG+L VG GK T + ++A+DR G AP LY Sbjct: 222 DVWVFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGRAGTSAPGHALYL 281 Query: 242 DSVEYS 247 V Y Sbjct: 282 VDVTYP 287 >gi|220915529|ref|YP_002490833.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] gi|219953383|gb|ACL63767.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] Length = 245 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA Q Sbjct: 1 MPVVKLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F R +NA L +++ S+ F AR SA + Y Y I Sbjct: 61 VVSFPEERPLPVKAYVMGMNALL--PPDVAVRAASLAPDGFDARRSARGKRYRYVIENLP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 L + +AW L+ N+R AA HLVGRHDF F++ C +R + DV Sbjct: 119 TRAPLTRLQAWQHFHPLELANVREAAAHLVGRHDFAAFQASDCACEHAVREVRRLDVVGE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G IE+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL Sbjct: 179 GGGRIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLDLLARGDRTEAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + + V Y Sbjct: 239 FLEEVFY 245 >gi|239908843|ref|YP_002955585.1| tRNA pseudouridine synthase A [Desulfovibrio magneticus RS-1] gi|259550383|sp|C4XPZ9|TRUA_DESMR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239798710|dbj|BAH77699.1| tRNA pseudouridine synthase A [Desulfovibrio magneticus RS-1] Length = 274 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 125/253 (49%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + G+ V VHGAGRTDSGVHAL Sbjct: 1 MARLRLTLAYDGTDFAGWQIQAAGGGRTVQGCLEEALATLCGQPVRVHGAGRTDSGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + KAL A L +++ +V FH+RF A + Y Y + T Sbjct: 61 AQVAHADVPEHRAGLPWGKALTALL--PKDVAVTEARLVAPDFHSRFDATGKEYRYTLWT 118 Query: 119 RQ-APLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R L + W + +LD M A VG HDF F++ S +R + Sbjct: 119 RPGHVLPWRRPYVWDVGRYGTLDVAAMEACAGLFVGEHDFAAFQNAGTDVHSTVRRVWDV 178 Query: 176 D--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + R FL +R+ +G+L VG GK T+ D+ L A DR+ Sbjct: 179 SRLAGTGPDETVWRFHGEGFLKQMVRNLMGALVAVGRGKATAEDVATLLAAGDRRRAPGT 238 Query: 234 APPEGLYFDSVEY 246 AP +GL +VEY Sbjct: 239 APAQGLCLHAVEY 251 >gi|332522319|ref|ZP_08398571.1| tRNA pseudouridine synthase A [Streptococcus porcinus str. Jelinkova 176] gi|332313583|gb|EGJ26568.1| tRNA pseudouridine synthase A [Streptococcus porcinus str. Jelinkova 176] Length = 249 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 MIRY +I Y+GS + G+QRQ +IQ IEK + + G+ + + GAGRTD+GVHA Sbjct: 1 MIRYKAVISYDGSQFSGFQRQTKARTIQEEIEKTLMRLNKGKFIAIQGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V FHAR+S ++Y + + Sbjct: 61 QVIHFDLAERRDLEKLRFALDT--QTPEDIDVISVEEVSNNFHARYSKHLKTYEFIVDVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + + + A P LD + +A + LVG HDFT F + + +RT+ D + Sbjct: 119 RPKNPMMRKYATHYPYPLDFSLIELAIKDLVGTHDFTGFTAAGTSVENKVRTLYQADCSF 178 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S + FL+ Q+R+ VG+L +G+ + + L+ ++R+ GP Sbjct: 179 DSHRQCLIFTFTGNGFLYKQVRNMVGTLLKIGNQRMPVEQVRIILEQKNRQLAGPTIAGN 238 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 239 GLYLKEIIYE 248 >gi|123969273|ref|YP_001010131.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. AS9601] gi|166228750|sp|A2BTB3|TRUA_PROMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123199383|gb|ABM71024.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. AS9601] Length = 268 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQ+QKN ++IQ ++KA+ +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGSHYSGWQKQKNANTIQEILDKALLKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN+ L TI IL V +HA +SA R Y Y I + Sbjct: 61 VIHFDIDCVIPGNSYSDVLNSLL--PSTIRILESVEVKDSWHACYSASYRHYRYVINNSK 118 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD M A++ + G HDF F+ + I I + DV Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLNASKKMEGEHDFFAFQKSGSNRQNSITKIKNIDVKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K + + + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISPEIFTDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEYS 247 F + Y Sbjct: 239 CFVNAVYE 246 >gi|307719509|ref|YP_003875041.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM 6192] gi|306533234|gb|ADN02768.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM 6192] Length = 248 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +++ Y+G+ + GWQRQ NG S+QG +E A+ + V VH AGRTDSGVHA+ Q Sbjct: 4 RNIKVVLAYDGTDFVGWQRQPNGRSVQGVVEDALARMHKHPVHVHAAGRTDSGVHAVGQC 63 Query: 62 AHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F ALN++L + L V FHAR+SA+RR Y Y + Sbjct: 64 INFITDIDSLPVEKFALALNSFL--PRDVKALQAEEVPPDFHARYSAVRREYRYYVFPSP 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + + + D + A +VG HDF++F S + S +R I Sbjct: 122 SPYPHLRRYSLWVNRLPDVRLLNAYASCIVGEHDFSSFCSPSDPSPSKVRLIHTASWFPE 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R+V +FL +R+ VG++ + K + K L+A+DR AP GL+ Sbjct: 182 GSQLVFRIVGNAFLWRMVRALVGTMLDLEKQKADPEMMRKILEARDRSAASDSAPAWGLF 241 Query: 241 FDSVEYS 247 V+Y Sbjct: 242 LHEVQYE 248 >gi|282899978|ref|ZP_06307939.1| tRNA pseudouridine synthase [Cylindrospermopsis raciborskii CS-505] gi|281195248|gb|EFA70184.1| tRNA pseudouridine synthase [Cylindrospermopsis raciborskii CS-505] Length = 292 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK ++Q IE AI V G V +HGAGRTD+GVHA QVA Sbjct: 13 RVALVIQYLGTNFHGWQRQKAQRTVQEEIETAIASVLGYHVTLHGAGRTDAGVHAAAQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN+YL I I + V + +HARFSA R Y Y I T P Sbjct: 73 HFNATGHIPAHKWATVLNSYL--PPDILIRASAGVKESWHARFSATYRRYRYTIYTEALP 130 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W L+ + M+ A LVG+H F S I + G Sbjct: 131 NLFVSPFSWHYYYAPLEEKLMQAALTPLVGKHHLAAFHRAGSARSHSWVEIQAVECGRQG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A FL+ +R VG L VG + + D Q +DR++ APP+GL Sbjct: 191 SLVHIEIQANGFLYGMVRLLVGMLVQVGSKQKSLEDFTNIWQTEDREKVKYAAPPQGLCL 250 Query: 242 DSVEYS 247 V YS Sbjct: 251 LRVGYS 256 >gi|260576677|ref|ZP_05844664.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2] gi|259021162|gb|EEW24471.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2] Length = 257 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 116/252 (46%), Positives = 160/252 (63%), Gaps = 6/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IEY+G+ + GWQRQ S+Q ++E A+ + V AGRTD+GVHA Sbjct: 1 MPRYALKIEYDGTPFQGWQRQAPGQPSVQAALEAALARLQPGEHTVAAAGRTDAGVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL REW L A+NA+L+ D +++L ++ V FHARFSA R YL+R++TR Sbjct: 61 QVAHCDLDREWDTFRLAGAINAWLR-PDPVAVLAVARVADDFHARFSARERRYLFRLVTR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 +AP+ ++GR W +P+ LD MR A HL+G+HDFTTFR+ CQA+SP++T+D + Sbjct: 120 RAPVTHDRGRVWQLPQPLDAGLMRQGAAHLIGKHDFTTFRAALCQAASPVKTLDEIAIET 179 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G I + ARSFLH Q+RS +G+L VG G W + +AL A+DR CGP+ P Sbjct: 180 RDYPEGQEIRFTLRARSFLHNQVRSIIGTLAQVGAGHWPPERVAEALAARDRAACGPVCP 239 Query: 236 PEGLYFDSVEYS 247 P+GLY V Y Sbjct: 240 PQGLYLAGVGYP 251 >gi|86606117|ref|YP_474880.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab] gi|86554659|gb|ABC99617.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab] Length = 287 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 120/247 (48%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y GSG+ GWQRQ ++QG +E+AI L G V ++GAGRTD+GVHA QV Sbjct: 4 RRIALKIQYLGSGFRGWQRQAGHRTVQGVLEEAIALRAGHPVALYGAGRTDTGVHASGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P + LN L + + +L + V +HARFSA R Y Y I+ R+ Sbjct: 64 AHFDTTSGIPPTEWARVLNDCL--PEDVVVLASAQVPDFWHARFSARWRRYRYLILNREL 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +W + L E M A L+G H FR + G Sbjct: 122 PDVFWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGL 239 +LI I V A FL+ +R VGSL++VG G+ + Q D R APP+GL Sbjct: 182 DLISIEVQASGFLYRMMRLLVGSLEVVGRGEISPQQFVHLWQHNDWSRMRTRYSAPPQGL 241 Query: 240 YFDSVEY 246 V Y Sbjct: 242 CLVDVGY 248 >gi|75906940|ref|YP_321236.1| tRNA pseudouridine synthase A [Anabaena variabilis ATCC 29413] gi|75700665|gb|ABA20341.1| tRNA pseudouridine synthase [Anabaena variabilis ATCC 29413] Length = 282 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++++Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QV Sbjct: 11 QRVALVVQYLGTNFHGWQRQKQHRTVQEEIETAIAKILGHHVTLHGAGRTDSGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P LN+YL I I + V ++HARFSA R Y Y I T Sbjct: 71 AHFDATGLIPPHKWASVLNSYL--PKDILIKASAAVGDRWHARFSAAYRRYRYTIYTEDR 128 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +W LD M+ A + L+G+H F + S + + + Sbjct: 129 PNLFVTPFSWHYYYAPLDESLMQAALKPLMGKHHLAAFHRAGSKRSHSWVEVQAVECHRS 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A FL+ +R VG L VG G+ T + + + Q R+E AP +GL Sbjct: 189 GPFIHIEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPSQGLC 248 Query: 241 FDSVEYS 247 V Y Sbjct: 249 LLRVGYP 255 >gi|268318033|ref|YP_003291752.1| tRNA pseudouridine synthase A [Rhodothermus marinus DSM 4252] gi|262335567|gb|ACY49364.1| tRNA pseudouridine synthase A [Rhodothermus marinus DSM 4252] Length = 252 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y ++IEY+G+ + GWQ Q+NG SIQ ++E+A+ +V E V V G+GRTD+GVHA Q Sbjct: 1 MPTYRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVLRERVRVVGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF R P L +LN L +I+I ++S+ FHAR+ A R Y Y + T Sbjct: 61 VAHFRTDRPVDPERLQGSLNGLL--PPSIAIRSVSLAPDDFHARYDARWRRYHYYVAT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 P ALE+ W + + D E M AA L+G HDFTTF + T+ + Sbjct: 117 VPCALERHLRWYLRPAPDFERMNRAACDLLGTHDFTTFCRTQTATRNRTCTVYLARWVPD 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +VA FLH +R+ VG+L +G G+ L + L A+DR+ GP AP G Sbjct: 177 PRPGDWHFEIVADRFLHGMVRAIVGTLIEIGRGQRDIAALPELLAARDRRLAGPAAPAHG 236 Query: 239 LYFDSVEYS 247 L ++V Y Sbjct: 237 LVLEAVGYE 245 >gi|157965031|ref|YP_001499855.1| tRNA pseudouridine synthase A [Rickettsia massiliae MTU5] gi|157844807|gb|ABV85308.1| tRNA pseudouridine synthase A [Rickettsia massiliae MTU5] Length = 246 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 106/246 (43%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQ+Q S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 2 MYRYKITIEYLGTDLAGWQKQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N Y + + N + FHARFSA R Y+YRII R Sbjct: 62 VAHFDLSKYLEPHKIITAIN-YFARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ A +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 121 YPSVIDLNRAWWISSPLDVPAMQQATAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 181 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPAAGLY 240 Query: 241 FDSVEY 246 F Y Sbjct: 241 FVKAAY 246 >gi|42527777|ref|NP_972875.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35405] gi|51316703|sp|Q73KE3|TRUA_TREDE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41818605|gb|AAS12794.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35405] gi|325474992|gb|EGC78178.1| tRNA pseudouridine synthase A [Treponema denticola F0402] Length = 268 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 124/251 (49%), Gaps = 8/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 + I Y+G+ + GWQ+Q ++QG +EKA+ + + +G+GRTDSGVHA Sbjct: 9 NILLTISYDGTNFCGWQKQTKEGAETFRTVQGELEKALTKIHKHPIETNGSGRTDSGVHA 68 Query: 58 LRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 RQ +F + ALN+ L I +++ + V HARF+A+ R+Y Y+I Sbjct: 69 ARQAVNFFCDIKSMRASNFLPALNSIL--PKDIRVMDAAEVSPLLHARFNALSRTYRYKI 126 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + A E+ W I + D + A L G D T F + Q+ S R I Sbjct: 127 KCGKTIFAHEQPYTWHIRRYPDIAALNEMASCLSGELDCTAFSAAGDQSISKSRYIKKAV 186 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + A +FL +RS VG+L + + + D + L+++ R++ GP APP Sbjct: 187 FFIENDYLIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPP 246 Query: 237 EGLYFDSVEYS 247 +GL+ S+EY Sbjct: 247 QGLFLWSIEYP 257 >gi|121605935|ref|YP_983264.1| tRNA pseudouridine synthase A [Polaromonas naphthalenivorans CJ2] gi|166228746|sp|A1VRR5|TRUA_POLNA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120594904|gb|ABM38343.1| tRNA pseudouridine synthase A [Polaromonas naphthalenivorans CJ2] Length = 264 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+GS Y GWQ Q +G ++Q +E A+ + + V AGRTD+GVHAL QV Sbjct: 1 MRIALGISYSGSAYEGWQSQLSGKTVQDKLELALSRFAVQPIRVMCAGRTDAGVHALMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L I++ V +FH+R SAI R Y Y ++ Sbjct: 61 VHFDTPLQRETSSWVRGTNAFL--PSDIAVQWAQPVPDEFHSRASAIARRYAYVVLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + + LD + MR AA HL+G HDF++FR+ CQA SP++T+ +++ Sbjct: 119 RPSVEAGRVGWVYRPLDGDAMRQAALHLMGEHDFSSFRAAQCQAKSPVKTMSRIEISQRA 178 Query: 182 N----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 A +FLH IR+ +G L +G G L + + A+ R P P+ Sbjct: 179 GPGSRYWRFEFEANAFLHHMIRNIMGCLLAIGQGNHPPEWLAEVVAARRRDAAAPTFSPD 238 Query: 238 GLYFDSVEYS 247 GLYF Y Sbjct: 239 GLYFLGPVYE 248 >gi|254673733|emb|CBA09384.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha275] Length = 266 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + +L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAVRPQQAWIRG-RKMPTCPKALPVLHARQVALEFHARFDAYGRHYRYLLESSP 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA +L+G DF++FR+ CQA SPI+TI ++ Sbjct: 126 VRSPLLKNRAGWTHLKLDIGPMRQAATYLIGEQDFSSFRAAECQAKSPIKTIYRANLTQS 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 245 Query: 241 FDSVEYS 247 V+Y Sbjct: 246 LTGVDYP 252 >gi|172038954|ref|YP_001805455.1| tRNA pseudouridine synthase A [Cyanothece sp. ATCC 51142] gi|171700408|gb|ACB53389.1| tRNA pseudouridine synthase [Cyanothece sp. ATCC 51142] Length = 286 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 114/246 (46%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G + GWQRQ ++Q IE +I V G V +HGAGRTD+GVHA QVA Sbjct: 12 RVALVIQYQGGRFHGWQRQPTQRTVQEDIETSIAQVLGYHVPIHGAGRTDAGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD V P LN L D I + + V +HARFSA+ R Y Y T + P Sbjct: 72 HFDDVSPIPPQRWADILNQRL--PDDILVRGSAEVPLTWHARFSALWRRYRYTFYTDKCP 129 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W L+ E M A L+GRH FR + + G Sbjct: 130 NLFVSPFSWHYYYEPLEVELMTKALNPLLGRHHLAAFRRAGSKRHHSWVEVQETQCYRQG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A FL+ +R VG L VG GK + + + Q Q R++ AP +GL Sbjct: 190 PFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLANFTEIWQHQQREQVKYSAPAKGLCL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 LRVGYP 255 >gi|297567108|ref|YP_003686080.1| tRNA pseudouridine synthase A [Meiothermus silvanus DSM 9946] gi|296851557|gb|ADH64572.1| tRNA pseudouridine synthase A [Meiothermus silvanus DSM 9946] Length = 259 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 93/257 (36%), Positives = 129/257 (50%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +E++G+ + G Q Q K ++Q ++E+A+ + G I V AGRTD+GVHAL Sbjct: 1 MRRIKLTVEFDGTHFAGLQTQAKGERTVQNTLEQALAQIPGAIPKVVAAGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H+D + P + ALN L + L V +FHAR S R+Y YRI+ R Sbjct: 61 MPLHYDTLDPIPPEKIPLALNGLL--PPDLRALAAEEVAPEFHARKSCHWRAYRYRILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 + P AL + AW IP+ L+ MR A +HLVG HDF F + +R I + Sbjct: 119 KTPSALLRHYAWWIPQQLNLVAMRHALEHLVGEHDFKAF--AVKEKRPTVRRIYRAHLTV 176 Query: 179 ---------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 I + V FL Q+RS VG+L VG GK S L + L+ R + Sbjct: 177 LTPDIAQDAKNEREIHLEFVGSGFLRGQVRSMVGTLVEVGLGKRDSQSLGELLRTGTRSQ 236 Query: 230 CGPLAPPEGLYFDSVEY 246 GP APP+GLYF Y Sbjct: 237 AGPTAPPQGLYFVGAGY 253 >gi|294792824|ref|ZP_06757971.1| tRNA pseudouridine synthase A [Veillonella sp. 6_1_27] gi|294456723|gb|EFG25086.1| tRNA pseudouridine synthase A [Veillonella sp. 6_1_27] Length = 261 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q N ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIQIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I +L + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYIYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L + W + K L+ M+ A LVG HDFTT + + ++ P++TI V Sbjct: 119 QLIADPLTQRYHWHVKKPLNIARMQAAGNELVGTHDFTTLKGTNSTSADPVKTIMGIRVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + I V+ FL+ +R+ G L +G G+ D++ L A+DR+ G AP +G Sbjct: 179 ARGSQVTISVIGDGFLYHMVRNIAGLLVDIGLGRRKVEDIKGYLAAKDRRAIGKTAPAQG 238 Query: 239 LYFDSVEY 246 L + + + Sbjct: 239 LCLEEIFF 246 >gi|198276843|ref|ZP_03209374.1| hypothetical protein BACPLE_03048 [Bacteroides plebeius DSM 17135] gi|198270368|gb|EDY94638.1| hypothetical protein BACPLE_03048 [Bacteroides plebeius DSM 17135] Length = 252 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 120/249 (48%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY + + Y+G+ Y GWQ Q NGSS+Q ++ KA+ E + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLAYDGTNYHGWQIQPNGSSVQETLMKALHTFLRDEAIEVVGAGRTDAGVHARL 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD+ + LN L IS+ + V++ HARF A R+Y Y + T+ Sbjct: 61 MVAHFDVEWMLDEDTVTDKLNRLL--PPDISVYRVRRVNQDAHARFDATYRTYKYYVTTQ 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + W + + LD M AAQ L DFT+F +H + I H + Sbjct: 119 KNP--FNRAYCWRLFQPLDFTKMNEAAQILFDYTDFTSFSKLHTDVKTNNCKIMHAHWDQ 176 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + A FL +R+ VG+L VG GK + K ++ ++R G P Sbjct: 177 VSETEWVFTIQADRFLRNMVRAIVGTLVEVGRGKLSVEGFRKVIEEKNRCSAGTSVPGHA 236 Query: 239 LYFDSVEYS 247 L+ + Y Sbjct: 237 LFLVDIGYP 245 >gi|317968841|ref|ZP_07970231.1| tRNA pseudouridine synthase A [Synechococcus sp. CB0205] Length = 289 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 119/248 (47%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQ 60 R + ++Y+GS Y GWQRQ S+Q ++E+A+ + V AGRTDSGVHA Q Sbjct: 11 RRIALCLQYDGSAYCGWQRQPRDPSVQEALERALVQLDPDGPATVVAAGRTDSGVHAAGQ 70 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P ALN L +I + + + V +HA FSA R Y Y I + Sbjct: 71 VVHFDCAGPIPPHRWPAALNGRL--PASIRVRSAASVPADWHACFSATYRRYRYTIYNAR 128 Query: 121 APLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W LD + MR A + ++G HDF F S T+ V Sbjct: 129 IPNLFLAPWSWHRYQFRLDEDRMREALEGMLGEHDFAAFERAGSARSHSRTTLQEVSVQR 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+E+ + A FL+ +R +G L VG+G+ + + + Q R+E APP+GL Sbjct: 189 RGDLLEVELQASGFLYGMVRLVMGQLVAVGEGRLSLEAFSRRWRNQAREEVKEAAPPQGL 248 Query: 240 YFDSVEYS 247 V Y Sbjct: 249 CLLRVGYP 256 >gi|300812341|ref|ZP_07092776.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496646|gb|EFK31733.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 262 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 135/252 (53%), Gaps = 7/252 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHAL 58 M RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ Sbjct: 1 MTSRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKRMTKGQEVRVFGSGRTDAGVHSV 60 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFD RE + KALN+ L + + IVDK FH+RFS + Y YR+ Sbjct: 61 GQVIHFDYPGREIPAANMIKALNSQL--PMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V Sbjct: 119 LDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A Sbjct: 179 ALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQ 238 Query: 236 PEGLYFDSVEYS 247 GLY V Y Sbjct: 239 SCGLYLYHVFYE 250 >gi|121595540|ref|YP_987436.1| tRNA pseudouridine synthase A [Acidovorax sp. JS42] gi|166228674|sp|A1WAT5|TRUA_ACISJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120607620|gb|ABM43360.1| tRNA pseudouridine synthase A [Acidovorax sp. JS42] Length = 274 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 123/259 (47%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q + +++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGQAYNGWQSQPSANTVQDRLEAALGRFATQEVHTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A+ R Y Y ++ Sbjct: 61 VHFDTELQRAPFSWVRGTNTFL--PADIAVQWAQPVPDAFHSRACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++ GR + +LD + M A QHL+G HDFT+FR+ CQA SP++T+ D+ Sbjct: 119 RPSVDAGRVGWVFHALDEQAMHKAVQHLLGEHDFTSFRASACQAKSPVKTLHRIDITRRA 178 Query: 182 N--------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +FLH IR+ +G + +G G + + L+A+ R Sbjct: 179 PPAGESTGTHGCVPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPEWMRTVLEARSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 DAAAPTFSPDGLYFQGPVY 257 >gi|60680398|ref|YP_210542.1| tRNA pseudouridine synthase A [Bacteroides fragilis NCTC 9343] gi|265765551|ref|ZP_06093826.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_16] gi|81316532|sp|Q5LGZ6|TRUA_BACFN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|60491832|emb|CAH06590.1| putative tRNA pseudouridine synthase A [Bacteroides fragilis NCTC 9343] gi|263254935|gb|EEZ26369.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_16] Length = 252 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 117/248 (47%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA V Sbjct: 4 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMV 63 Query: 62 AHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 64 AHFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITTVK 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA L DFT+F +H + I I H + Sbjct: 122 --FPFNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQE 179 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L Sbjct: 180 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDDFRKIIEQQNRCKAGTSAPGNAL 239 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 240 FLVNVEYP 247 >gi|239618279|ref|YP_002941601.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1] gi|259550401|sp|C5CGS8|TRUA_KOSOT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239507110|gb|ACR80597.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1] Length = 250 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+GS +FG+Q Q N ++QG E+A+ + + GAGRTD+GVHA Q Sbjct: 1 MKRFAAVVVYDGSNFFGYQIQPNKRTVQGVFEEALERIHKAKIPTDGAGRTDTGVHAYGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V F P + ALNA L D I + + V F RF+A +R Y Y I+ Sbjct: 61 VIAFTSNLDRLTPKHMKDALNANL--PDDIYVRRIHEVPSNFSPRFAAKKRIYHYYILNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + W P +D MR A+++L+G HDFT+FR+ H S IRTI + Sbjct: 119 KEPDLFRRKYFWWFPYEVDLNRMRQASRYLIGEHDFTSFRTGHDD-RSTIRTITGIRILR 177 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N+I IRV SFL +R+ VG L VG G ++ L+A+DR + AP G Sbjct: 178 LQKNIILIRVEGISFLRRMVRNIVGLLMRVGTGGIEPKKTKEILEARDRSKLPSSAPAHG 237 Query: 239 LYFDSVEYS 247 L V + Sbjct: 238 LVLHKVIFD 246 >gi|320107224|ref|YP_004182814.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing protein [Terriglobus saanensis SP1PR4] gi|319925745|gb|ADV82820.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Terriglobus saanensis SP1PR4] Length = 287 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 128/261 (49%), Gaps = 20/261 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + + Y+G+ + GWQ Q +IQGS+ AI VT E V+ G+GRTD+GVHAL QV Sbjct: 17 WRLKLAYDGTDFAGWQVQPGLPTIQGSLASAIRSVTSEEVLPQGSGRTDAGVHALGQVVS 76 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ--- 120 L P L +ALN L +I +L IV +FHAR + ++Y Y + + Sbjct: 77 LKLAVPIPPDNLKRALNRIL--PTSIRVLEAGIVAPEFHARRGVLSKTYRYTLFLCRPTK 134 Query: 121 -----APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-------- 167 W P LD M AA+ VG HDFT+F + + + Sbjct: 135 DVEEIVCSPERARWVWQYPAPLDVAAMMQAAERFVGTHDFTSFAANDPERKTRLEAESNA 194 Query: 168 --PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 IRT+ G+ + +V FLH +R+ VG+ VG G+ +T++EK L A+ Sbjct: 195 PDNIRTLYSSAWTLCGDELSYQVRGSGFLHHMVRNLVGTCVDVGAGRILATEMEKILVAK 254 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 +R GP APP+GL VEY Sbjct: 255 NRGAAGPTAPPQGLSLLEVEY 275 >gi|282898331|ref|ZP_06306322.1| tRNA pseudouridine synthase [Raphidiopsis brookii D9] gi|281196862|gb|EFA71767.1| tRNA pseudouridine synthase [Raphidiopsis brookii D9] Length = 292 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 121/246 (49%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK ++Q IE AI V G V +HGAGRTD+GVHA QVA Sbjct: 13 RVALVIQYLGTNFHGWQRQKAQRTVQEEIEIAIASVLGYHVTLHGAGRTDAGVHAAAQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN+YL I I + V + +HARFSA+ R Y Y I T+ P Sbjct: 73 HFNATGHIPAHKWATVLNSYL--PPDILIRASAGVKESWHARFSAVYRRYRYTIYTQALP 130 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W L+ E M+ A LVG+H F S I + G Sbjct: 131 NLFVSPFSWHYYYAPLEEELMQAALTPLVGKHHLAAFHRAGSARSHSWVEIQAVECCRQG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A FL+ +R VG L VG + + D Q +DR++ APP+GL Sbjct: 191 SLVHIEIQANGFLYGMVRLLVGMLVQVGSKQKSLEDFTNIWQTEDREKVKYAAPPQGLCL 250 Query: 242 DSVEYS 247 V Y+ Sbjct: 251 LRVGYN 256 >gi|227879273|ref|ZP_03997143.1| tRNA pseudouridine synthase A [Lactobacillus crispatus JV-V01] gi|227861167|gb|EEJ68816.1| tRNA pseudouridine synthase A [Lactobacillus crispatus JV-V01] Length = 256 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 6/246 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHF 64 M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ QV HF Sbjct: 1 MTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQVIHF 60 Query: 65 DLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D + + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 61 DYPGKTIPANRMILAMNSMM--PTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLDHFVN 118 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF--G 181 ++ P LD E M+IAAQ L+G+HDFT+F + + +RTI + + Sbjct: 119 PFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGRIEDKVRTIYYVKITEDKKD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + FL+ +R V +L +G+ + DL++ + A+DR+E A GLY Sbjct: 179 NEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHASGLYL 238 Query: 242 DSVEYS 247 V Y Sbjct: 239 YHVFYD 244 >gi|289449823|ref|YP_003475752.1| tRNA pseudouridine synthase A [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184370|gb|ADC90795.1| tRNA pseudouridine synthase A [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 274 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 124/252 (49%), Gaps = 7/252 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ E++G+ Y GWQ Q N +IQ +++KA+ + + V+V+G RTD+GVHA Sbjct: 1 MKRNIAILTEWDGTAYGGWQIQANAPTIQENLQKALEKLCHKSVLVNGCSRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V++F + ALNA L + I++ + + F+ARF A + Y Y I Sbjct: 61 HVSNFHFDSSIPVANIPLALNAML--PEDIAVQAATEMPLDFNARFDACGKQYSYYICNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL + + L MR AA ++ G HDF F + Q S +RT+ D+ S Sbjct: 119 KLRHALYSRYSCCEARPLSAAAMREAAGYIEGTHDFACFMASGGQVKSTVRTVYSVDLVS 178 Query: 180 F----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G + I V FL+ +R G+L VG K D+ + L++ R E G P Sbjct: 179 YPICGGAIWRIIVRGNGFLYNMVRIIAGTLLYVGLNKLNPQDVREVLRSGHRSEAGKTLP 238 Query: 236 PEGLYFDSVEYS 247 GL+ D V Y Sbjct: 239 ACGLFLDRVFYE 250 >gi|301161932|emb|CBW21476.1| putative tRNA pseudouridine synthase A [Bacteroides fragilis 638R] Length = 252 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 117/248 (47%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA V Sbjct: 4 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMV 63 Query: 62 AHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 64 AHFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITTVK 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA L DFT+F +H + I I H + Sbjct: 122 --FPFNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQK 179 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L Sbjct: 180 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDDFRKIIEQQNRCKAGTSAPGNAL 239 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 240 FLVNVEYP 247 >gi|309789641|ref|ZP_07684222.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG6] gi|308228377|gb|EFO82024.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG6] Length = 262 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 127/251 (50%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+G+ + G Q Q G S+Q ++E+A +T E V+ AGRTD+GVHA+ Q Sbjct: 1 MRNIALRLAYDGTDFIGSQYQNQGRSVQEALEQAWEGLTQERRRVNLAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + +NA L ++I ++ VD FHAR SA RRSY Y I Sbjct: 61 VANIRTETRHSRRTILRGMNAKL--PPDVAIQAVAEVDPDFHARHSANRRSYRYLIDNNA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 A L + W + + LD M A L G HDF F ++ + S +RT ++S Sbjct: 119 AWLPNLRNYVWFVEQPLDQAAMAEALVRLEGTHDFAAFTALVPEQRSTVRTCYTARLSSV 178 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +LI I + A +FL +R VG++ LVG GK T + L+ +DRK GP A Sbjct: 179 TMFDRHLIAIDLAANAFLQHMVRVIVGTVVLVGRGKITPDGFQAILEGRDRKAAGPTAVA 238 Query: 237 EGLYFDSVEYS 247 GL SV Y Sbjct: 239 HGLTLVSVGYP 249 >gi|116334238|ref|YP_795765.1| pseudouridylate synthase [Lactobacillus brevis ATCC 367] gi|122269080|sp|Q03PY8|TRUA_LACBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116099585|gb|ABJ64734.1| Pseudouridylate synthase [Lactobacillus brevis ATCC 367] Length = 265 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + + Y+G+ + G+QRQ N +++ ++ + + + +V++G+GRTD+GVHA Sbjct: 1 MQRYKVTLMYDGTNFAGFQRQPNKRTVESTLTDVVNKMAKQPDPAIVIYGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + K LN+ L + +L + V FHAR+ + Y YR+ Sbjct: 61 LAQVVHFDFPFLIPADNMRKGLNSML--PMDMEVLKVEEVAPTFHARYDVSGKQYQYRMD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-- 175 + ++ +D + +A LVG HD+T+F + Q + +RTI Sbjct: 119 MGEFRNPFKRNYTGHWKFPVDLAKINVALADLVGEHDYTSFVASGAQTRTFVRTIYEATC 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ + + F++ Q+R VG L +G G D+ + + +DRK+ P Sbjct: 179 HIDEANHELVFEFYGNGFMYNQVRIMVGVLVEIGSGTRPVHDVLRLYEVKDRKQARRTVP 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 AAGLYLKHVYY 249 >gi|15618490|ref|NP_224776.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae CWL029] gi|33241935|ref|NP_876876.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae TW-183] gi|4376873|gb|AAD18719.1| Pseudouridylate Synthase I [Chlamydophila pneumoniae CWL029] gi|33236445|gb|AAP98533.1| pseudouridylate synthase I [Chlamydophila pneumoniae TW-183] Length = 267 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G+ Y GWQ+Q N SIQ IE ++ +T + +GRTD+GVHA Q Sbjct: 1 MTKVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTPLIASGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF + + KALNA L I I ++++ D FHAR+ AI + Y Y + Sbjct: 61 VAHFRAPDHPLFANANLTKKALNAIL--PKDIVIRDVALFDDNFHARYLAIAKEYRYSLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ + E M+ A L+G HDF +F + +S +RTI D+ Sbjct: 119 RLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYNSTVRTIYTLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + I FL+ +R+ VG+L VG G + L L+ ++R+E AP Sbjct: 179 VDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPAY 238 Query: 238 GLYFDSVEYS 247 GL V YS Sbjct: 239 GLSLHHVCYS 248 >gi|301309451|ref|ZP_07215393.1| tRNA pseudouridine synthase A [Bacteroides sp. 20_3] gi|300832540|gb|EFK63168.1| tRNA pseudouridine synthase A [Bacteroides sp. 20_3] Length = 252 Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 122/248 (49%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ + V + GAGRTD+GVHA Sbjct: 1 MRRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRKPVPIVGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +AHFD + L + LN L I++ + V + HARF A R+Y Y I TR Sbjct: 61 IAHFDWEGPIEDLAFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYITTR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + +P LD E M A + L DFT+F +H + I H Sbjct: 119 K--DPFNYELVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L Sbjct: 177 EGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVTYP 244 >gi|304384407|ref|ZP_07366813.1| tRNA pseudouridine synthase A [Prevotella marshii DSM 16973] gi|304334505|gb|EFM00792.1| tRNA pseudouridine synthase A [Prevotella marshii DSM 16973] Length = 260 Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+GY GWQ Q NG S+Q +++A+ +V + V GAGRTD+GVHA R Sbjct: 1 MHRYFIHFSYDGTGYHGWQIQPNGISVQEVLQQALSVVLRREMTVTGAGRTDTGVHARRM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD+ L LN L +++ N+ V HARFSA RR+Y Y I + Sbjct: 61 TAHFDIDDATDCTQLTYKLNRLL--PRDVAVENIEEVAPDLHARFSARRRTYHYYIHFAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-DVNS 179 P ++ + + LD M AA+ L+ +DF F H + + + Sbjct: 119 NP--FKERYSCELHFPLDFNRMNEAARLLLQTNDFAAFCKSHTDVKTTFCNVTEAVWIRQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + R+ A FL +R+ VG+L VG G+ ++ D ++ + R G P +GL Sbjct: 177 TADEWYFRISADRFLRNMVRAVVGTLIDVGRGRLSTDDFRAIIETKRRTAAGESMPAKGL 236 Query: 240 YFDSVEYS 247 + + +EY Sbjct: 237 FLEEIEYE 244 >gi|315659196|ref|ZP_07912060.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis M23590] gi|315495621|gb|EFU83952.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis M23590] Length = 264 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q G ++Q EK + + V +H + RTD GVHAL Q Sbjct: 1 MRILVNICYQGSNFLGFQIQNQGRTVQQQFEKILKRMHRHDVRIHPSSRTDRGVHALEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + + VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELKIADGQWQYAMNSAL--PDDIYVKEVKQVDSDFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G +P+ L+ E M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 KNPFESGLKTYVPQQLNIERMNEAAQKFIGTHDFTGFCSQKTEVESKVRTLYQSEIEMTT 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R + L VG G + ++ L+ ++R AP EGLY Sbjct: 179 YGFDYIVTGSGFLYNMVRVLMAFLIGVGKGNRSPEEVTALLEQKNRDNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|189461835|ref|ZP_03010620.1| hypothetical protein BACCOP_02501 [Bacteroides coprocola DSM 17136] gi|189431429|gb|EDV00414.1| hypothetical protein BACCOP_02501 [Bacteroides coprocola DSM 17136] Length = 252 Score = 264 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 122/249 (48%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 M RY + + Y+G+ Y GWQ Q NG+S+Q ++ +A+ + + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLAYDGANYHGWQIQPNGNSVQETLTRALITFLRDDAIEVTGAGRTDAGVHARL 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD+ R + LN L IS+ + V + H RF A R+Y Y I TR Sbjct: 61 MVAHFDIERMLDCDSVTDKLNRLL--PPDISVYQVRRVRQDAHTRFDATYRTYKYYITTR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + AW + +SLD + M AA+ L DFT+F +H + I H Sbjct: 119 K--DPFNRNYAWRVFQSLDFDKMNEAAKVLFEYTDFTSFSKLHTDVKTNNCRIMHARWEQ 176 Query: 180 FG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A FL +R+ VG+L VG GK T K ++ ++R G P Sbjct: 177 IGEDEWVFTIQADRFLRNMVRAVVGTLVEVGRGKLTVEGFRKVIEEKNRCSAGTSVPGHA 236 Query: 239 LYFDSVEYS 247 L+ + Y Sbjct: 237 LFLVDIGYP 245 >gi|197303593|ref|ZP_03168631.1| hypothetical protein RUMLAC_02321 [Ruminococcus lactaris ATCC 29176] gi|197297327|gb|EDY31889.1| hypothetical protein RUMLAC_02321 [Ruminococcus lactaris ATCC 29176] Length = 264 Score = 264 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y ++I Y+G+ Y GWQRQ N +IQG +E I G V V+G+GRTD+GVHA Sbjct: 13 MRTYRLVIAYDGTAYQGWQRQANTEMTIQGILESCISKAAGYAVEVNGSGRTDAGVHARG 72 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + +N L I I + FHAR SA+ + Y+Y+I T Sbjct: 73 QTASVVLHGKAEDGFFTEKVNKLL--PPDIRIREAGLEKNGFHARKSAVGKRYVYQIDTD 130 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ + PK LD M+ AA+ L G H+F + + +S RTI V Sbjct: 131 EKPDVFDRRYTYHFPKKLDIAAMQQAAELLTGTHEFAAYTDKKDE-TSTKRTIYAIMVGG 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I+ FL+ +R G+L VG G + AL+A+DR + G LAP GL Sbjct: 190 QGGRINIQYEGTGFLYHMVRILTGTLLEVGMGTRRIESVTIALEAKDRTKVGFLAPARGL 249 Query: 240 YFDSVEY 246 + D V Y Sbjct: 250 FLDEVYY 256 >gi|160942942|ref|ZP_02090181.1| hypothetical protein FAEPRAM212_00419 [Faecalibacterium prausnitzii M21/2] gi|158445843|gb|EDP22846.1| hypothetical protein FAEPRAM212_00419 [Faecalibacterium prausnitzii M21/2] Length = 254 Score = 264 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFR 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F P L ALN +L I +L V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPPQKLPLALNQHL--PPDIRVLAAQTVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDVN 178 + +P+ LD M+ AAQ VG HDF + A +RTI V Sbjct: 119 DSPFDAAYYTRVPRRLDEAAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ ++I V A +L+ +R G+L VG G+ + D+ L ++DR GP P +G Sbjct: 179 RRGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEYS 247 L+ V+Y Sbjct: 239 LFLKCVDYP 247 >gi|166030569|ref|ZP_02233398.1| hypothetical protein DORFOR_00232 [Dorea formicigenerans ATCC 27755] gi|166029571|gb|EDR48328.1| hypothetical protein DORFOR_00232 [Dorea formicigenerans ATCC 27755] Length = 244 Score = 264 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 1 MRTYKLTISYDGTRYQGWQRQATTDNTIQHILEWSIGKLVGYRVRVDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L ++N YL + I I+ + ++ FHAR SA + Y Y I R Sbjct: 61 QVASVQLSKLYDVKELKDSINRYL--PEDIRIMKVELMKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P LD E MR AA +++G +FT+F + + P+R + + + S Sbjct: 119 EKPDVFSRRYCYHYPHKLDIEAMREAADYMIGPKNFTSF-TDDSENKDPVRRVTNIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I F++ +R G+L VG G+ ++ + + A+DR G LAP GL Sbjct: 178 NGEKLRITYYGTGFMYHMVRIMTGTLLEVGTGEREASMIPVVIAAEDRSLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|294673952|ref|YP_003574568.1| tRNA pseudouridine synthase A [Prevotella ruminicola 23] gi|294472804|gb|ADE82193.1| tRNA pseudouridine synthase A [Prevotella ruminicola 23] Length = 244 Score = 264 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 6/248 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+ RY + + Y+G+ Y GWQ Q NG S+QG +++ + + + + + GAGRTD+GVHA Sbjct: 1 MVKRYFIWLSYDGTNYHGWQVQPNGISVQGELQRVLSTLLRQDISITGAGRTDAGVHARV 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHF++ + L +N L I I + V HARFSA R+Y Y I TR Sbjct: 61 MAAHFEIEADIDCKQLAYKMNRML--PQDIVIDRIEEVSLDMHARFSATERTYHYYIHTR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P E+ + I LD E M A + L DF F H + + + + Sbjct: 119 KCP--FERHYSCEIHYPLDFEKMNEAGRILCTYEDFGAFCKAHSDVKTTLCNVTRAEWIQ 176 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + A FL +R+ VG+L VG G+ + + ++ + R + G P Sbjct: 177 TGDTTWYFVITANRFLRNMVRAVVGTLVDVGRGRLSLDEFRSVIEGKRRSDAGESMPGNA 236 Query: 239 LYFDSVEY 246 L+ + V+Y Sbjct: 237 LFLEDVKY 244 >gi|197120829|ref|YP_002132780.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] gi|196170678|gb|ACG71651.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] Length = 245 Score = 264 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA Q Sbjct: 1 MPVVKLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F R +NA L +++ S+ F AR SA + Y Y I Sbjct: 61 VVSFPEDRPLPVKAYVMGMNALL--PPDVAVRAASLEPDGFDARRSARGKRYRYVIENLP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 L + +AW L+ ++R AA HLVGRHDF F++ C +R + DV Sbjct: 119 TRAPLTRLQAWQHFHPLELASVREAAAHLVGRHDFAAFQASDCACEHAVREVRRLDVLGE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G IE+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL Sbjct: 179 AGGRIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLDLLARGDRTEAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + + V Y Sbjct: 239 FLEEVFY 245 >gi|160900673|ref|YP_001566255.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1] gi|238687164|sp|A9BNH5|TRUA_DELAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160366257|gb|ABX37870.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1] Length = 282 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 127/268 (47%), Gaps = 24/268 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G++IQ +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A R Y Y ++ Sbjct: 61 VHFDTPLDRAPFSWVRGTNTFL--PPDIAVQWAQPVPDAFHSRACATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 ++E GR + +LD + M+ AA+HL+G HDF++FR+ CQA SP++T+ + Sbjct: 119 RPSVEAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVKTLHRLSITRRM 178 Query: 181 -GN--------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 G+ +FLH +R+ +G L +G G + ++ Sbjct: 179 AGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGTYAPQWMQ 238 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L A+ R P P+GLYF Y Sbjct: 239 QVLDARSRDAAAPTFSPDGLYFLGPVYD 266 >gi|329114449|ref|ZP_08243211.1| tRNA pseudouridine synthase A [Acetobacter pomorum DM001] gi|326696525|gb|EGE48204.1| tRNA pseudouridine synthase A [Acetobacter pomorum DM001] Length = 262 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 113/249 (45%), Positives = 155/249 (62%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R+ + +EY+G+G GWQRQK+G S+Q +E A + G V AGRTDSGVHAL Q Sbjct: 10 QRWAVKLEYDGTGLVGWQRQKSGLSVQSLLEAAAARLAGNRPVSSITAGRTDSGVHALAQ 69 Query: 61 VAH--FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAH F + + + L+ +LK + +L+ VD + ARFSA RSY YRI+ Sbjct: 70 VAHLDFPADVRFSRHSVREGLSYHLK-PHNVVVLDAVQVDTDWSARFSATWRSYQYRILN 128 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R++ L G W + +LD E M+ AA LVG HDFT+FR++ CQA SP+RT+D DV+ Sbjct: 129 RRSRPTLLAGNVWHVKSTLDVEKMQEAANILVGPHDFTSFRAVACQAHSPMRTLDQLDVS 188 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + ARSFLH Q+R+ VG+LKLVG G W + +AL+A++R GP APPEG Sbjct: 189 RHGDEVLVFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEG 248 Query: 239 LYFDSVEYS 247 LY + V Y Sbjct: 249 LYLNGVGYD 257 >gi|254525991|ref|ZP_05138043.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9202] gi|221537415|gb|EEE39868.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9202] Length = 268 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+G Y GWQ+QKN +++Q +E A+F +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGYHYSGWQKQKNATTVQEILESALFKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN L TI IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDSVIPGFSYSNILNNLL--PSTIRILESVEVKNSWHACYSAVYRHYRYVINNGK 118 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD M A++ + G HDF F+ + + I + D+ Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLRASKTMKGEHDFFAFQKSGSNRRNSVTKIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K +S + + + AP +GL Sbjct: 179 VEDLIFVDIKATGFLYGMVRLIVGQLVLVGEKKISSDIFIDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEYS 247 F + Y Sbjct: 239 CFVNAVYE 246 >gi|295132840|ref|YP_003583516.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] gi|294980855|gb|ADF51320.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] Length = 250 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQ Q S+Q +++A+ + + + V GAGRTD+GVHA + Sbjct: 1 MRYFIDLAYLGTAYHGWQIQPEAVSVQQVLQEALSKILQQNIEVVGAGRTDAGVHATQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD L LN++L ISI L V Q HARF A RSY Y I+ + Sbjct: 61 AHFDADLNCDEKTLQFKLNSFL--PKDISIRQLFKVQSQAHARFDACSRSYEYHIVNFKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ A+ + K D E M AA L +F F + I Sbjct: 119 PFKID--LAYYLLKQPDIEKMNHAAAMLKDYTNFKCFSKSRTDVKTYNCNITAAFWEQSK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L +G GK + L++ L+++DR G P GLY Sbjct: 177 DELIFHITADRFLRNMVRAIVGTLLDIGLGKNSVEFLKEILKSEDRSMAGTSVPAHGLYL 236 Query: 242 DSVEYS 247 +EY Sbjct: 237 TRIEYP 242 >gi|167759303|ref|ZP_02431430.1| hypothetical protein CLOSCI_01650 [Clostridium scindens ATCC 35704] gi|167663177|gb|EDS07307.1| hypothetical protein CLOSCI_01650 [Clostridium scindens ATCC 35704] Length = 244 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGSRYQGWQRQATTDNTIQFVLEWSIGKLVGYRVHVDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L +LN YL + I I+ + +V FHAR SA + Y Y I R Sbjct: 61 QVASVKLSKLYDTKELKDSLNRYL--PEDIRIVKVELVKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A Q+L+G +FT+F + + PIR I + + S Sbjct: 119 EKPDVFSRRYCYHYPEKLDIEAMRDAVQYLIGPKNFTSF-TDDKECKDPIRRIINIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I FL+ +R G+L +G GK ++ L + A+DR G LAP GL Sbjct: 178 TGEKVRITYYGTGFLYHMVRILTGTLLEIGTGKRDASMLPVVIAAEDRCLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|114775677|ref|ZP_01451245.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1] gi|114553788|gb|EAU56169.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1] Length = 267 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 138/249 (55%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +E++G + GWQ+Q+N +S+Q ++ A+ V GE + V AGRTD+GVHA + Sbjct: 10 QRIALALEFDGRPFHGWQQQENATSVQACLQDALQAVEGEPLTVVAAGRTDAGVHAEALL 69 Query: 62 AHFDLV---REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H D+ + P N++L D I ++ + V FHARF+ RSY Y+I Sbjct: 70 VHADVSAARWQRSPRAYLHGCNSHL--PDEIRVVGVRAVAADFHARFACRGRSYRYQIWN 127 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R AL++ R W +P+SL+ E M+ AA H +GRHDF+ R+ CQA+ + I ++ Sbjct: 128 RNTASALQRWRHWWMPRSLNIEAMQGAAVHCLGRHDFSALRAAGCQAAHAEKHIRSLEIV 187 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I I V A +FL+ +R+ VG+L VG GK + D L ++DR+ AP G Sbjct: 188 QHGHCIHIHVSADAFLYHMVRNLVGNLVEVGAGKRSPDDFAALLASRDRQLGAATAPAHG 247 Query: 239 LYFDSVEYS 247 LYF Y Sbjct: 248 LYFTDAWYD 256 >gi|37523138|ref|NP_926515.1| tRNA-pseudouridine synthase A [Gloeobacter violaceus PCC 7421] gi|42559743|sp|Q7MBB9|TRUA_GLOVI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|35214141|dbj|BAC91510.1| tRNA-pseudouridine synthase A [Gloeobacter violaceus PCC 7421] Length = 304 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 120/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y G +FGWQ Q ++Q +E+A + V H AGRTD+GVHA QV Sbjct: 16 RLALRVQYLGGHFFGWQWQPGQRTVQQCLEEATERIARHPVRYHAAGRTDTGVHASGQVV 75 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD ++ P + LN+ L D I++ + V +HARF+A+ R Y Y I P Sbjct: 76 HFDTHKKLAPETWVRGLNSLL--PDDIAVRAAAYVSDHWHARFTALWREYRYCIHNSTVP 133 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++W P LD E + A L G HDF FR + + + G Sbjct: 134 DLFVRAQSWYYPYCPLDSEAVAAALATLPGHHDFRAFRRAGSSRPHSLVHVYTAECTREG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I IRV A SFL+ +R +G+L VG G+W+ QA +R++ APP+GL Sbjct: 194 EQIAIRVRANSFLYGMMRLLIGALAEVGSGRWSVERFAGLWQAGNREQVKYAAPPQGLCL 253 Query: 242 DSVEYS 247 V Y Sbjct: 254 VGVGYP 259 >gi|331085595|ref|ZP_08334679.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407482|gb|EGG86984.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 239 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 123/242 (50%), Gaps = 5/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M I Y+G GY GWQR N +IQG+IE+ + + G V + G+GRTD+GVHA QVAH Sbjct: 1 MTIAYDGGGYKGWQRLTNEPGTIQGTIERVLSKIEGSPVKISGSGRTDAGVHAKGQVAHA 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L P +L + LN L + I I + V + FH+R+SA+ + Y YRI R Sbjct: 61 FLKTNEDPELLRQELNRML--PEDIRICLVESVSQSFHSRYSAVSKVYEYRIDQRSRADV 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + P LD + MR AA HL G HDF +F + + +RTI D+ + Sbjct: 119 FTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSF--TDNKEADSVRTIFSIDMKEENEKL 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R G+L VG+G T + +A +DR G LAP GL V Sbjct: 177 VLAFRGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDRSLTGFLAPAHGLCLREV 236 Query: 245 EY 246 Y Sbjct: 237 NY 238 >gi|291459136|ref|ZP_06598526.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] gi|291418390|gb|EFE92109.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] Length = 252 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT------GEIVVVHGAGRTDSGV 55 Y ++I Y+GS Y GW+RQ +IQG IE + + + V + GAGRTD+GV Sbjct: 4 NYKLLISYDGSRYLGWERQPGIDRTIQGKIEAVLSRMLLAEGKLQQPVDLIGAGRTDAGV 63 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA A+ L + + LN YL D IS+ LSI K+FHAR+ AI + Y Y Sbjct: 64 HARGMCANVFLDSKRSEGEIRAYLNRYL--PDDISVDALSICGKRFHARYHAIGKLYRYS 121 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + E+ ++P+ D E MR+AA+ L+G D+ +F S +R ID Sbjct: 122 CYFGEKKPVFERKYLLILPEMPDVERMRLAAEALIGEKDYRSFCGNPRMKKSTLRRIDRI 181 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ I FL QIR VG+L +G GK D+E+ L A+DR + G A Sbjct: 182 EILERKGCIRFYFHGNGFLQHQIRIMVGTLLEIGLGKREPGDMERILLAKDRSQAGYTAE 241 Query: 236 PEGLYFDSVEY 246 GL VEY Sbjct: 242 AGGLCLMRVEY 252 >gi|288801196|ref|ZP_06406651.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 299 str. F0039] gi|288331807|gb|EFC70290.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 299 str. F0039] Length = 245 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 7/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+++Q ++KA+ L+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYFAYDGTNYHGWQIQPNGNTVQEELQKALSLILRCNINVVGAGRTDTGVHARSM 60 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAHFD + +L LN L I + + V + HARFSA R+Y Y + Sbjct: 61 VAHFDISTEIVFDAELLSGKLNRLL--PPDIVVFAIKPVAEDMHARFSATWRTYHYYVHK 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P + ++ + LD M AA++L+ DF F H A + + + Sbjct: 119 GKDPFV--RNYSYSYYRDLDFTLMNEAARYLLEVEDFEAFCKSHSDAKTTLCNVTKAQWI 176 Query: 179 SFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + A FL +R+ VG+L VG K T + + + + R G P Sbjct: 177 QDDDTHWHFVIKANRFLRNMVRAVVGTLVEVGQHKITIEEFKNIVDQRKRIGAGESMPAH 236 Query: 238 GLYFDSVEY 246 L+ + VEY Sbjct: 237 ALFLEKVEY 245 >gi|186684484|ref|YP_001867680.1| tRNA pseudouridine synthase A [Nostoc punctiforme PCC 73102] gi|186466936|gb|ACC82737.1| tRNA pseudouridine synthase A [Nostoc punctiforme PCC 73102] Length = 282 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 120/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QVA Sbjct: 12 RVALVIQYLGTHFHGWQRQKQHRTVQEEIETAIATILGHHVTLHGAGRTDSGVHAAAQVA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ P LN+YL I I + VD ++HARFSA R Y Y I T Sbjct: 72 HFEATGLIPPHKWATILNSYL--PPDILIRASASVDNRWHARFSAAYRRYRYTIYTEDRL 129 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W LD ++ A + L+G+H F + S + + G Sbjct: 130 NLFVRPFSWHYYYAPLDESLIQAALKPLLGKHHLAAFHRAGSKRSHSWVEVQAVECRRSG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ +R VG L VG G+ T + + + Q R+E APP+GL Sbjct: 190 PFIHIEIQADGFLYGMVRLLVGMLVEVGSGQRTLSSFTELWKEQRREEVKYAAPPQGLCL 249 Query: 242 DSVEYS 247 V Y Sbjct: 250 LRVGYP 255 >gi|71065963|ref|YP_264690.1| tRNA pseudouridine synthase A [Psychrobacter arcticus 273-4] gi|71038948|gb|AAZ19256.1| probable tRNA pseudouridine synthase [Psychrobacter arcticus 273-4] Length = 276 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IE+ G+ Y GWQRQ+ +Q ++E AI V E V V AGRTDS VHA +AH Sbjct: 14 LAIAIEFLGTHYHGWQRQREVLGVQQALETAISTVANEPVEVIAAGRTDSSVHASNMIAH 73 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + +N+ L D I++ + + FHARF+AI R Y Y + + Sbjct: 74 FVTHAYRPTHNWLRGVNSLL--PDDIALRWVQPMPADFHARFAAIARRYRYITLNQTQRP 131 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + I + LD + M++AA +VG HDF+++R+ CQ++ P+R I H ++ + G Sbjct: 132 AILNHQVTHIYEPLDLKAMQLAAADIVGTHDFSSYRAAACQSNQPVRHISHANLFTHGPF 191 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G + D L +DR P A +GLYF + Sbjct: 192 IVFDIQADGFLHHMVRNLMGTLYAIGRHELEPADFLNILAKKDRTIAPPTASGDGLYFIN 251 Query: 244 VEYS 247 Y Sbjct: 252 AYYP 255 >gi|304440310|ref|ZP_07400199.1| tRNA pseudouridine synthase A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371062|gb|EFM24679.1| tRNA pseudouridine synthase A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 247 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + I Y+G+ ++G+Q+Q G +I+ + KA+ V + +GRTDSGVHA Q Sbjct: 1 MNIRIKITYDGTNFYGFQKQDRGRTIEKVLTKAVENTVKHPVKLFYSGRTDSGVHAFGQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F L K +N +L IS++ VD FH+R+SA + Y Y I + Sbjct: 61 ANFYTESTIDIGNLPKVINYHL--PTDISVVEAKYVDDNFHSRYSAKGKFYRYIIYNNKY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + RAW P +D E + + +LVG HDF +F + IR I +VN G Sbjct: 119 RNALFENRAWQYPHKIDMEILEKSLSYLVGEHDFKSFMGRYATVKDTIRIIHKIEVNKVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I I +SFL +R VG+ + + ++AL ++R G AP GLY Sbjct: 179 DVINIDFYGKSFLKNMVRIIVGTSVQISSKNKSPEITKEALVRKERISAGMTAPACGLYL 238 Query: 242 DSVEY 246 V + Sbjct: 239 MDVYF 243 >gi|258545708|ref|ZP_05705942.1| tRNA pseudouridine synthase A [Cardiobacterium hominis ATCC 15826] gi|258519078|gb|EEV87937.1| tRNA pseudouridine synthase A [Cardiobacterium hominis ATCC 15826] Length = 265 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + +EY+G+ Y GWQRQ ++IQ +E A+ V V AGRTD+GVHA Q Sbjct: 3 TRYAVGLEYDGTHYAGWQRQPFFAATIQEQLECALSQVAAHPVETTCAGRTDAGVHATAQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD N YL I + + V +FHAR+SA R Y Y I R Sbjct: 63 VIHFDTGAARSDFAWLAGANRYL--PADIRLQWIRAVPAEFHARYSARERHYRYLIRHRA 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P AL R KSLD M AAQ L+G HDF+ FR+ CQA SP R I DV Sbjct: 121 QPSALWARRCHWHKKSLDAAAMHSAAQALIGEHDFSAFRAAECQAKSPWRFIRSIDVRER 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +FLH +R+ VG+L VGDG+ + + L ++DR+ G AP +GLY Sbjct: 181 HGWIAVDICGNAFLHHMVRNIVGTLLAVGDGRRDTAWPGEVLASRDRRCAGVTAPAQGLY 240 Query: 241 FDSVEYS 247 F V Y Sbjct: 241 FHGVAYP 247 >gi|315186691|gb|EFU20450.1| tRNA pseudouridine synthase A [Spirochaeta thermophila DSM 6578] Length = 248 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +++ Y+G+ + GWQRQ NG S+QG +E A+ + V VH AGRTDSGVHA+ Q Sbjct: 4 RNIKVVLAYDGTDFVGWQRQPNGRSVQGVVEDALARMHKHPVHVHAAGRTDSGVHAVGQC 63 Query: 62 AHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F ALN++L + L V FHAR+SA+RR Y Y + + Sbjct: 64 INFITDIDSLPVEKFALALNSFL--PRDVKALQAEEVPPDFHARYSAVRREYRYYVFSSP 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + + + D + A +VG HDF++F S + S +R I Sbjct: 122 SPYPHLRRYSLWVNRLPDVRLLNAYASCIVGEHDFSSFCSPSDPSPSKVRLIHTASWFPE 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + R+V +FL +R+ VG++ + K + K L+A+DR AP GL+ Sbjct: 182 GARLVFRIVGNAFLWRMVRALVGTMLDLEKQKADPEMMWKILEARDRSAASDSAPAWGLF 241 Query: 241 FDSVEYS 247 V+Y Sbjct: 242 LHEVQYE 248 >gi|225569151|ref|ZP_03778176.1| hypothetical protein CLOHYLEM_05231 [Clostridium hylemonae DSM 15053] gi|225161950|gb|EEG74569.1| hypothetical protein CLOHYLEM_05231 [Clostridium hylemonae DSM 15053] Length = 246 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+GS Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 3 MRTYKLTVSYDGSRYQGWQRQATTDNTIQFVLEWSIGKLVGYRVHVDGSGRTDAGVHARG 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + P +LN YL + I I+ +V FHAR SA + Y Y I R Sbjct: 63 QVASVKLSKLYDPQEFKDSLNRYL--PEDIRIVKAELVKNGFHARKSAKGKKYEYYIDCR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A ++LVG +FT+F + + P+R I + + S Sbjct: 121 EKPDVFSRRYCYHYPEKLDIEAMRNAVEYLVGVKNFTSF-TDDKECRDPVRRITNIKIVS 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I FL+ +R G+L +G GK S L + A+DR G LAP GL Sbjct: 180 TGDKVRITYYGTGFLYHMVRILTGTLLEIGTGKRDSAMLPVVIAAEDRSLAGFLAPARGL 239 Query: 240 YFDSVEY 246 + V Y Sbjct: 240 FLRKVYY 246 >gi|309777173|ref|ZP_07672136.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 3_1_53] gi|308915043|gb|EFP60820.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 3_1_53] Length = 253 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 120/248 (48%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I+ Y+GS Y GWQRQ N SIQ +E AI V G V + +GRTD+ VHAL Q Sbjct: 1 MPRYKVILSYDGSAYGGWQRQTNTHSIQQEVEAAIEKVEGRFVSITASGRTDAHVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V+ P +ALN+ L I I + +VD FHARF AI + Y Y I T + Sbjct: 61 VFHFDSVKHLEPENWKRALNSLL--PHDIRIQEVCLVDDAFHARFHAISKRYDYLITT-E 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFDVNS 179 LD E MR A +G HDFT+F S S I+TI DV Sbjct: 118 VQNPFYYNYMGKDRTRLDVERMRECACIFLGTHDFTSFTSSKVDPRKSKIKTITRLDVVQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FL +R +L G + + +++ L +D+ C A EGL Sbjct: 178 EEHAVRMIFEGNGFLRYMVRMIAQTLIEAGKHRLSVAAVKEMLYGKDKHLCRYKAQAEGL 237 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 238 YLVEVRYP 245 >gi|22297651|ref|NP_680898.1| tRNA pseudouridine synthase A [Thermosynechococcus elongatus BP-1] gi|34222849|sp|Q8CWM6|TRUA_THEEB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22293828|dbj|BAC07660.1| tRNA-pseudouridine synthase I [Thermosynechococcus elongatus BP-1] Length = 284 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 108/247 (43%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ ++Q IE+AI V V V AGRTD+GVHA QV Sbjct: 12 QRLALLIQYQGTHFHGWQRQVGQRTVQEVIEQAIASVVNHPVSVVAAGRTDTGVHAAGQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH + LNA L + I + V +HARFSA+ R Y Y + T Sbjct: 72 AHVTVNSPIPVHRWPGILNARL--PADVVIRAAAAVPPDWHARFSALWRRYRYTLYTDPC 129 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W LD M Q LVGRH + F + + Sbjct: 130 PNIFLRPWTWHYYYAPLDVAKMAAVLQPLVGRHHLSAFHRSGSNRAHSWVEVQAVSCQRR 189 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+EI V A FL+ +R VG L VG G+ + + Q + R APP GL Sbjct: 190 GALVEIEVQASGFLYGMMRLLVGLLVQVGQGQRSPASFTEIWQQEQRHLVKYAAPPSGLC 249 Query: 241 FDSVEYS 247 V Y Sbjct: 250 LLGVGYP 256 >gi|303234561|ref|ZP_07321198.1| tRNA pseudouridine synthase A [Finegoldia magna BVS033A4] gi|302494395|gb|EFL54164.1| tRNA pseudouridine synthase A [Finegoldia magna BVS033A4] Length = 244 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA Q Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +N + SD+I I+ VD FHARFSA ++Y Y + + Sbjct: 61 VCNFIVDTDISANQFLMGVNHF--TSDSIVIVKSEEVDLDFHARFSAKSKTYKYILCNKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD + + L+GRHDFT+F + + +P+RTID + Sbjct: 119 YMEPWFNDYKGHRKYYLDFDLLLKCRDMLIGRHDFTSFVNDLEEDINPVRTIDEITIEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GLY Sbjct: 179 DDDIVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPCGLY 238 Query: 241 FDSVEY 246 ++EY Sbjct: 239 LMNIEY 244 >gi|237733260|ref|ZP_04563741.1| tRNA pseudouridine synthase A [Mollicutes bacterium D7] gi|229383641|gb|EEO33732.1| tRNA pseudouridine synthase A [Coprobacillus sp. D7] Length = 245 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + Y+GS + G+Q Q ++QG I+KA+ + E +++HG+GRTD+ VH +Q Sbjct: 1 MVRVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD RE +A+N +L + I IL+ VD+ FH+R+SAI++ Y Y + T + Sbjct: 61 VFHFDTTREMPEAQWKRAINHFL--PNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E MR AA+ +G HDF +F S Q + IR + + + Sbjct: 119 Y-SPFETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCSYD-QYGNTIRELYELSITNE 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I+ +V F +R VG L VG + T L++ L ++ ++C A P+GLY Sbjct: 177 KGIIKFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLY 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LHEVFYD 243 >gi|332653968|ref|ZP_08419712.1| tRNA pseudouridine synthase A [Ruminococcaceae bacterium D16] gi|332517054|gb|EGJ46659.1| tRNA pseudouridine synthase A [Ruminococcaceae bacterium D16] Length = 250 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 127/248 (51%), Gaps = 3/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + + YNG+ Y GWQ QKN S+ ++EKA+ V V GAGRTD+GVHA Sbjct: 1 MERNIALKLMYNGTAYHGWQVQKNAISVAETLEKALSTVVCHPVKCTGAGRTDAGVHAEV 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +A+F + A+N L I ++ + V +F+A S R+ Y YRI Sbjct: 61 YIANFRTTSTIPCDRIPLAVNTRL--PRDIVVVKATEVPMEFNAIGSCHRKEYTYRIYNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + RAW PK LD + M+ AA VG HDF RS+ + + +RT+ +FDV Sbjct: 119 RLGNPFYVDRAWFYPKYLDEKIMQQAADQFVGTHDFRAVRSVGTETRTTVRTVYYFDVTR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LIE +V A FL+ +R+ G++ +GK + D+ L++ +R GP PP GL Sbjct: 179 HDQLIECKVCANGFLYNMVRAMTGTIVYAAEGKLSPQDIPAILESGNRTLAGPTVPPGGL 238 Query: 240 YFDSVEYS 247 Y + Y Sbjct: 239 YMTKLWYD 246 >gi|322435303|ref|YP_004217515.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX9] gi|321163030|gb|ADW68735.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX9] Length = 258 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 16/260 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + M + Y+G+ Y GWQ Q ++QG + A+ L+TGE V+ G+GRTD+GVHAL Q Sbjct: 1 MRYWKMTLAYDGTAYHGWQVQPGLPTVQGRLAAALKLLTGETVLPQGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 V F L L +ALN L I +L++ V+ +FHAR A+R++Y YR+ R Sbjct: 61 VVSFGLEAPIPGENLLRALNRAL--PGAIRVLSVEAVEAEFHARRGAVRKTYEYRLFPRV 118 Query: 120 -----QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-------- 166 + + W P +D AA+ ++G HDF++F + + Sbjct: 119 GVRPERICSPMLAAYVWDCPWEIDLGRAEAAARVILGEHDFSSFAASDPDRTERLSGVER 178 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 S +RT+ + L+ RVV FLH +R+ VG G+ +++ L A+D Sbjct: 179 SNVRTVYESGWSELDGLMVYRVVGNGFLHHMVRNLVGCFVDAACGRTEVSEVAGILAAKD 238 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R CG AP GL+ VEY Sbjct: 239 RTACGATAPASGLFLVGVEY 258 >gi|153853827|ref|ZP_01995183.1| hypothetical protein DORLON_01174 [Dorea longicatena DSM 13814] gi|149753577|gb|EDM63508.1| hypothetical protein DORLON_01174 [Dorea longicatena DSM 13814] Length = 244 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ ++IQ +E +I + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTISYDGSRYQGWQRQATTDNTIQYILEWSIGKLVGYRVHIDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L +LN YL + I I+ + + FHAR SA + Y Y I R Sbjct: 61 QVASVKLSKLYDTKELKDSLNRYL--PEDIRIVKVELAKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A ++L+G +FT+F + + PIR I + + S Sbjct: 119 EKPDVFSRRYCYHYPEKLDIEAMRDATKYLIGPKNFTSF-TDDKECKDPIRKITNIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I FL+ +R G+L +G GK ++ L + A+DR G LAP GL Sbjct: 178 SGEKVRITYYGTGFLYHMVRILTGTLLEIGAGKRDASMLPVVIAAEDRSLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|237721333|ref|ZP_04551814.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_2_4] gi|229449129|gb|EEO54920.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_2_4] Length = 260 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 117/241 (48%), Gaps = 5/241 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA VAHFD Sbjct: 1 MAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLMVAHFDSD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + LN L ISI + V HARF A R+Y Y + T + P + Sbjct: 61 ELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDTHARFDATARTYKYYVTTSKYP--FNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEI 186 W + L+ E M AA+ L +DFT+F +H + I I H + + Sbjct: 117 QYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQEEDATWVF 176 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L+ +VEY Sbjct: 177 TIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQALFLVNVEY 236 Query: 247 S 247 Sbjct: 237 P 237 >gi|93006392|ref|YP_580829.1| tRNA pseudouridine synthase A [Psychrobacter cryohalolentis K5] gi|92394070|gb|ABE75345.1| tRNA pseudouridine synthase A [Psychrobacter cryohalolentis K5] Length = 280 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IE+ G+ Y GWQRQ+ +Q ++E AI V E V V AGRTDS VHA +AH Sbjct: 18 LAIAIEFLGTHYHGWQRQREVLGVQEALETAISTVANEPVEVIAAGRTDSSVHAGNMIAH 77 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + +N+ L D I++ + + FHARF+AI R Y Y + + Sbjct: 78 FVTHAYRPSHNWLRGVNSLL--PDDIALRWVQPMPADFHARFAAIARRYRYITLNQTQRP 135 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + I + LD + M++AA +VG HDF+++R+ CQ++ P+R I H ++ + G Sbjct: 136 AILNHQVTHIHEPLDLKAMQLAAADIVGTHDFSSYRAAACQSNQPVRHISHANLFAHGQF 195 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G + D L +DR P A +GLYF + Sbjct: 196 IVFDIQADGFLHHMVRNLMGTLYAIGRHELEPADFLNILAKKDRTIAPPTASGDGLYFIN 255 Query: 244 VEYS 247 Y Sbjct: 256 AYYP 259 >gi|222111761|ref|YP_002554025.1| tRNA pseudouridine synthase a [Acidovorax ebreus TPSY] gi|254789633|sp|B9MDL6|TRUA_ACIET RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221731205|gb|ACM34025.1| tRNA pseudouridine synthase A [Acidovorax ebreus TPSY] Length = 274 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 124/259 (47%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRMALGVSYNGQAYNGWQSQPSGNTVQDRLEAALGRFATQEVHTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A+ R Y Y ++ Sbjct: 61 VHFDTQLQRAPFSWVRGTNTFL--PTDIAVQWAQPVPDAFHSRACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++ GR + +LD + M A QHL+G HDFT+FR+ CQA SP++T+ D+ Sbjct: 119 RPSVDAGRVGWVFHALDEQAMHRAVQHLLGEHDFTSFRASACQAKSPVKTLHRIDITRRA 178 Query: 182 N--------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +FLH IR+ +G + +G G + + L+A+ R Sbjct: 179 PPAGESTGTHGCIPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPEWMRTVLEARSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 DAAAPTFSPDGLYFQGPVY 257 >gi|167755943|ref|ZP_02428070.1| hypothetical protein CLORAM_01463 [Clostridium ramosum DSM 1402] gi|167703935|gb|EDS18514.1| hypothetical protein CLORAM_01463 [Clostridium ramosum DSM 1402] Length = 245 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + Y+GS + G+Q Q ++QG I+KA+ + E +++HG+GRTD+ VH +Q Sbjct: 1 MVRVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD RE +A+N +L + I IL+ VD+ FH+R+SAI++ Y Y + T++ Sbjct: 61 VFHFDTTREMPEAQWKRAINHFL--PNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTKE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E MR AA+ +G HDF +F S Q + IR + + + Sbjct: 119 Y-SPFETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCSYD-QYGNTIRELYELSITNE 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I+ +V F +R VG L VG + T L++ L ++ ++C A P+GLY Sbjct: 177 KGIIKFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLY 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LHEVFYD 243 >gi|225619823|ref|YP_002721080.1| tRNA pseudouridine synthase A [Brachyspira hyodysenteriae WA1] gi|254789605|sp|C0QZT8|TRUA_BRAHW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225214642|gb|ACN83376.1| tRNA pseudouridine synthase A [Brachyspira hyodysenteriae WA1] Length = 249 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 4/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+Y+G+ ++GWQ Q N ++QG I KA+ V GE + ++G GRTD+GVHAL Q Sbjct: 1 MNNIKITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKVYGEKITIYGCGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + + VP+ ALN+YL + I+ + F+AR SA R YLY + Sbjct: 61 VANFRVPKMLVPINKVHIALNSYL--DRDLRIIKAEEMPDSFNARASATFREYLYIVHNS 118 Query: 120 QAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AW K+ +D + + A++L+G H+FT+F S + S R ++ Sbjct: 119 STSFPFYERYAWFYRKNVIDEKLINEYARYLIGEHNFTSFCSTEDENDSKFRYLERVKAI 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + +FLH +R VG+L K +E L+++DR + AP G Sbjct: 179 RKGDTIYFIIRGNAFLHNMVRIIVGTLVEGQKKKKPINFIEDILKSEDRAKAFVTAPAHG 238 Query: 239 LYFDS 243 LYF Sbjct: 239 LYFRR 243 >gi|110636905|ref|YP_677113.1| tRNA pseudouridine synthase A [Cytophaga hutchinsonii ATCC 33406] gi|110279586|gb|ABG57772.1| pseudouridylate synthase I [Cytophaga hutchinsonii ATCC 33406] Length = 248 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ Y GWQ Q+N ++QG ++KA+ V G + + G+GRTD+GVHA Q+ Sbjct: 1 MRYFLDISYRGANYHGWQIQENAVTVQGVLQKALSNVLGAKIDILGSGRTDTGVHASSQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D +E L +N YL I I + +V HARF A+ R+Y+YRI + Sbjct: 61 VHLDSPKEIDA-ALIFRINGYL--PKDICIKSARLVQDDAHARFDALSRAYVYRITLVKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E G A+ ++ + M AA L+ DF +F +H ++ TI H G Sbjct: 118 P--FEIGLAYYFYPPIEIDRMNKAAAILLQYEDFESFSKVHTDVTNFNCTIFHAYWERNG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ V A FL +R+ VG++ VG G+ + D + + A+DRK G APPE LY Sbjct: 176 DMLYFHVKANRFLRGMVRTLVGTMLEVGKGRMSLDDFVQIILAKDRKRAGISAPPEALYL 235 Query: 242 DSVEYS 247 VEY Sbjct: 236 SEVEYP 241 >gi|256830021|ref|YP_003158749.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028] gi|256579197|gb|ACU90333.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028] Length = 246 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 125/250 (50%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ Y GWQ Q G +IQG+IE + + GE+V VHG+GRTDSGVHAL Q Sbjct: 1 MPRIRLTVAYVGTRYQGWQIQGRGETIQGAIEDKLARICGELVRVHGSGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ + +ALNA L D ISIL FHARFS + Y Y + T Sbjct: 61 VAHFDVPESKRHIPWRQALNAML--PDDISILEAREAQDDFHARFSVRSKRYAYTLWTEP 118 Query: 121 -APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + W + LD E M AA+ L G HDF F++ + +RT++ V + Sbjct: 119 RFTMPQRAPFVWPVRG-LDFEAMDQAAEVLAGTHDFAAFQNAGTEIKGTVRTLEPI-VRA 176 Query: 180 FGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G R A FL +R+ +G L VG G D+ L+ DR++ AP Sbjct: 177 PGTHSAEWVFRFQADGFLKQMVRNLMGLLVEVGRGGLAPADVRPILEGCDRRKAPATAPA 236 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 237 RGLTLEEVMY 246 >gi|213418519|ref|ZP_03351585.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 239 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 114/223 (51%), Gaps = 2/223 (0%) Query: 25 SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLK 84 S+Q +EKA+ V E + V AGRTD+GVH QV HF+ +NA L Sbjct: 2 RSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL- 60 Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 I++ + V FHARFSA R Y Y I + A+ + LD E M Sbjct: 61 -PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHR 119 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + + A +F+H +R+ VGS Sbjct: 120 AAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGS 179 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 L VG + + + L A+DR A EGLY +V+Y Sbjct: 180 LLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDYP 222 >gi|15836112|ref|NP_300636.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae J138] gi|16752458|ref|NP_444720.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae AR39] gi|12644497|sp|Q9Z7X4|TRUA_CHLPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|7189101|gb|AAF38045.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae AR39] gi|8978952|dbj|BAA98787.1| pseudouridylate synthase I [Chlamydophila pneumoniae J138] Length = 267 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G+ Y GWQ+Q N SIQ IE ++ +T + +GRTD+GVHA Q Sbjct: 1 MTKVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTPLIASGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF + + KALNA L I I ++++ D FHAR+ I + Y Y + Sbjct: 61 VAHFRAPDHPLFANANLTKKALNAIL--PKDIVIRDVALFDDNFHARYLTIAKEYRYSLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ + E M+ A L+G HDF +F + +S +RTI D+ Sbjct: 119 RLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYNSTVRTIYTLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + I FL+ +R+ VG+L VG G + L L+ ++R+E AP Sbjct: 179 VDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPAY 238 Query: 238 GLYFDSVEYS 247 GL V YS Sbjct: 239 GLSLHHVCYS 248 >gi|53712218|ref|YP_098210.1| tRNA pseudouridine synthase A [Bacteroides fragilis YCH46] gi|253563743|ref|ZP_04841200.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_2_5] gi|62901264|sp|Q64XV0|TRUA_BACFR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52215083|dbj|BAD47676.1| tRNA pseudouridine synthase A [Bacteroides fragilis YCH46] gi|251947519|gb|EES87801.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_2_5] Length = 252 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 117/248 (47%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA V Sbjct: 4 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMV 63 Query: 62 AHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 64 AHFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITTVK 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA L DFT+F +H + I I H + Sbjct: 122 --FPFNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQE 179 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L Sbjct: 180 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVVDFRKIIEQQNRCKAGTSAPGNAL 239 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 240 FLVNVEYP 247 >gi|302379698|ref|ZP_07268183.1| tRNA pseudouridine synthase A [Finegoldia magna ACS-171-V-Col3] gi|302312605|gb|EFK94601.1| tRNA pseudouridine synthase A [Finegoldia magna ACS-171-V-Col3] Length = 244 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA Q Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +N + SD+I I+ VD FHARFSA ++Y Y + + Sbjct: 61 VCNFIVDTDISANQFLMGVNHF--TSDSIVIVKSEEVDLDFHARFSAKSKTYKYILCNKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD + + L+G+HDFT+F + + +P+RTID + Sbjct: 119 YMEPWFNDYKGHRKYYLDFDLLLKCRDMLIGKHDFTSFVNDLEEDINPVRTIDEITIEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GLY Sbjct: 179 DDDIVFSFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGLY 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LMDIEY 244 >gi|210617714|ref|ZP_03291708.1| hypothetical protein CLONEX_03932 [Clostridium nexile DSM 1787] gi|210149156|gb|EEA80165.1| hypothetical protein CLONEX_03932 [Clostridium nexile DSM 1787] Length = 249 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 127/247 (51%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y MII Y+GS Y GWQRQ +IQ +E+ + + G V + G+GRTD+GVHA Sbjct: 1 MRNYKMIIVYDGSRYKGWQRQNLTNLTIQTILERTVEQIVGYPVEIDGSGRTDAGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+ + + LN L + I + + +V FH+R+SA + Y Y I TR Sbjct: 61 QVANMKV-SGLLDESFVGELNCLL--PEDICVKEMELVPGSFHSRYSAKAKKYKYCIDTR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + K L ++M+ AA++L G HDF+ F + S +RTI + Sbjct: 118 KKPCVFTRRYTYHFTKELHLDDMKKAAEYLKGTHDFSAFTDNKDE-KSKVRTIYEIKIVK 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +E FL+ +R G+L VG + + D++ AL+ ++R+ G LAP GL Sbjct: 177 KWTRLEFEFYGTGFLYHMVRILTGTLLEVGCAEKSIEDIKMALEQKERELTGFLAPARGL 236 Query: 240 YFDSVEY 246 + + V Y Sbjct: 237 FLEKVYY 243 >gi|218282056|ref|ZP_03488361.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989] gi|218216974|gb|EEC90512.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989] Length = 247 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++ Y+G Y GWQ+Q+N IQ IE+A++ +T E V V +GRTD+GVHA QV Sbjct: 1 MIVKALVSYDGFNYAGWQKQENALGIQQVIEEALYKITKENVDVVASGRTDAGVHAFGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + + +ALNA L I IL + FHARFSA+ + Y Y Sbjct: 61 FHFETNKNIPAIQYERALNALL--PKDIRILKTEEMPDDFHARFSAVGKRYDYYCSYD-I 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSF 180 L+ K LD E M+ A++ +G HDFT+F S P ++TI + ++ Sbjct: 118 KNPFNYKYRNLLTKKLDIEAMKNASKVFLGSHDFTSFASSKIDPRKPRVKTISNIEIIEE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + FL Q+R G+L VG K D+++ L A+D+ C A GLY Sbjct: 178 GMDVHFIFEGTGFLRYQVRMMTGTLIAVGQHKIGVDDVQRMLDAKDKSACRYNASSCGLY 237 Query: 241 FDSVEYS 247 V+Y+ Sbjct: 238 LVEVKYN 244 >gi|296136763|ref|YP_003644005.1| tRNA pseudouridine synthase A [Thiomonas intermedia K12] gi|295796885|gb|ADG31675.1| tRNA pseudouridine synthase A [Thiomonas intermedia K12] Length = 257 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y G+ Y GWQ Q G +Q +E+A G AGRTD+GVHAL QV H D Sbjct: 1 MGLSYGGTSYCGWQSQPGGCGVQDFLERAFAQFLGVPTRTICAGRTDAGVHALGQVVHLD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLS-IVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P + +NA+L +++ + + F AR SA +R Y Y + A Sbjct: 61 TPLQREPSSWVRGVNAFL--PRDMAVQWARTDLPQTFDARRSAYQRRYRYVLRNHPVRPA 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L+ RA + LD + +R AAQ L+G HDF+ FRS CQA SP++T+ ++ +G+ + Sbjct: 119 LDHARAGWTHRPLDLDLLRAAAQCLLGEHDFSAFRSSECQALSPVKTLHAIEIARYGHTL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + A +FLH +R+ VGSL VG+G + L + L ++DR+ P P+GLYF Sbjct: 179 VFDLRANAFLHHMVRNIVGSLLAVGNGSKPVSWLAEVLASRDRRLAAPTFMPDGLYFLGP 238 Query: 245 EYS 247 +Y Sbjct: 239 DYP 241 >gi|282849896|ref|ZP_06259279.1| tRNA pseudouridine synthase A [Veillonella parvula ATCC 17745] gi|282580333|gb|EFB85733.1| tRNA pseudouridine synthase A [Veillonella parvula ATCC 17745] Length = 261 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q N ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIRIIVAYDGTDLVGYQKQSNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I +L + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L + W + K L+ M+ A LVG HDFTT + + + P++TI V Sbjct: 119 QLIADPLTQRYHWHVKKPLNIARMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + I V+ FL+ +R+ G L +G G+ D++ L A+DR+ G AP +G Sbjct: 179 ARGSQVTISVIGDGFLYHMVRNIAGLLVDIGLGRRKVEDIKGYLAAKDRRAIGKTAPAQG 238 Query: 239 LYFDSVEY 246 L + + + Sbjct: 239 LCLEEIFF 246 >gi|114327354|ref|YP_744511.1| tRNA pseudouridine synthase A [Granulibacter bethesdensis CGDNIH1] gi|114315528|gb|ABI61588.1| tRNA pseudouridine synthase A [Granulibacter bethesdensis CGDNIH1] Length = 270 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 119/256 (46%), Positives = 160/256 (62%), Gaps = 11/256 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---------NGSSIQGSIEKAIFLVT-GEIVVVHGAGRT 51 RY + IEY+G+ + GWQRQ S+Q +E+A + GE V AGRT Sbjct: 11 TRYALRIEYDGTPFIGWQRQGTDDSATAQGRAVSVQWVLEQAAARLARGEAVSSIVAGRT 70 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D+GVHA QVA DL + P + +ALN ++K ++IL + ++ARFSAI RS Sbjct: 71 DAGVHAQAQVAQIDLPTAFHPERVREALNFHMK-PYPVAILEAAYAPDGWNARFSAIGRS 129 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y Y I+ R+A AL +GR W + + LD + M AA+HL+GRHDFT+FR+ CQA SP+RT Sbjct: 130 YRYLILNRRARPALMEGRVWHVAQPLDADTMDGAAKHLLGRHDFTSFRAAACQAKSPLRT 189 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 +D DV G+LI I ARSFLH Q+R+ VG+LKLVGDG+WT+ + AL A+DR + G Sbjct: 190 LDRLDVRRDGDLITIIAEARSFLHHQVRNMVGTLKLVGDGRWTAEHVAAALAARDRAKAG 249 Query: 232 PLAPPEGLYFDSVEYS 247 P APP+GL V Y Sbjct: 250 PTAPPDGLALTGVIYE 265 >gi|296125792|ref|YP_003633044.1| tRNA pseudouridine synthase A [Brachyspira murdochii DSM 12563] gi|296017608|gb|ADG70845.1| tRNA pseudouridine synthase A [Brachyspira murdochii DSM 12563] Length = 247 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 4/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+Y+G+ ++GWQ Q N ++QG I KA+ + GE + ++G GRTD+GVHAL Q Sbjct: 1 MNNIKITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKIYGEKITIYGCGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + + VP+ ALN+ L + I+ +D F+AR SA R YLY + Sbjct: 61 VANFRVPKMLVPINKVHIALNSCL--DRDLRIIKAEEMDDNFNARASATFREYLYVVHNS 118 Query: 120 QAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AW K++ D + + A++L+G H+FT+F S + S R ++ Sbjct: 119 STSFPFYERYAWFYRKNIIDEKLINEYAKYLIGEHNFTSFCSTEDENDSKFRYLEKVKAV 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + +FLH +R VG+L K +E L+ ++R E AP G Sbjct: 179 RKGDTIYFIIKGNAFLHNMVRIIVGTLVEGQKKKMPVNFIEDILKRENRTEAFVTAPAHG 238 Query: 239 LYFDS 243 LYF Sbjct: 239 LYFRR 243 >gi|256841433|ref|ZP_05546940.1| tRNA pseudouridine synthase A [Parabacteroides sp. D13] gi|256737276|gb|EEU50603.1| tRNA pseudouridine synthase A [Parabacteroides sp. D13] Length = 265 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ + V + GAGRTD+GVHA + Sbjct: 15 RRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRKPVPIVGAGRTDAGVHARLMI 74 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD V L + LN L I++ + V + HARF A R+Y Y + T++ Sbjct: 75 AHFDWEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTKK 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +P LD E M A + L DFT+F +H + I H D Sbjct: 133 --DPFNHELVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHADWTQE 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L+ Sbjct: 191 GDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALF 250 Query: 241 FDSVEYS 247 V Y Sbjct: 251 LVDVTYP 257 >gi|332827815|gb|EGK00550.1| tRNA pseudouridine synthase A [Dysgonomonas gadei ATCC BAA-286] Length = 254 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 122/248 (49%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG S+Q +IEKA+ + V + GAGRTD+GVHA Sbjct: 1 MKRYFIYLSYNGEKYCGWQIQPNGVSVQETIEKALSTLLRMPVSIVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD +E ++L LN+ L I+I + V HARF A R Y Y I T Sbjct: 61 TAHFDSEQEITDLLLLANKLNSLL--PKDIAIQKIIEVKPDAHARFDAESRLYRYYITTD 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + I + D E M A+ L DFT+F +H + TI Sbjct: 119 K--DPFLHHLKYKIYGNPDIEIMNACAKVLFDYEDFTSFSKLHTDVKTNNCTIMLARWEQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + A FL +RS VG+L G GK T+ D + ++A+DR + G P L Sbjct: 177 AGNDYIFTIKANRFLRNMVRSIVGTLLEAGRGKITTDDFRRIIEAKDRCKAGTSVPGHAL 236 Query: 240 YFDSVEYS 247 + + +EY+ Sbjct: 237 FLEEIEYN 244 >gi|33862089|ref|NP_893650.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|42559755|sp|Q7TU31|TRUA_PROMP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33634307|emb|CAE19992.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 268 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 125/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++I+Y+GS + GWQRQKN S+Q +IE +F ++ +I+ +GRTD+GVHA Q Sbjct: 1 MKRVALVIQYDGSYFSGWQRQKNAISVQETIENCLFKISNQIIKTFASGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN+ L TI IL V +HA +SA+ R Y Y I + Sbjct: 61 VIHFDIDFLIPIDRYADVLNSRL--PHTIRILESVEVKSSWHACYSAVYRHYRYVINNNK 118 Query: 121 APLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W K LD +M IA ++G HDF F+ S+ + TI + Sbjct: 119 IPNLFLNKWSWHRYQKYLDEVSMSIALDGMIGEHDFFAFQKSGSNRSTSVTTIKDIKLER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI I + A FL+ +RS VG L LVG+ K T + + + + AP +GL Sbjct: 179 TEDLILIDIKATGFLYGMVRSIVGQLVLVGEKKITPDIFKDRWVLKKKHDVRESAPAKGL 238 Query: 240 YFDSVEYS 247 F + Y Sbjct: 239 CFVNSVYE 246 >gi|219684777|ref|ZP_03539719.1| tRNA pseudouridine synthase A [Borrelia garinii PBr] gi|219671722|gb|EED28777.1| tRNA pseudouridine synthase A [Borrelia garinii PBr] Length = 246 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + + I IL L V FH RF+A +R Y YRI+ Sbjct: 61 IITFDININIQLNNLKKALNAIL-LKNGIKILKLKYVKNSFHPRFNAQKRKYSYRILNSN 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESVSTFETILKSKNRNFARTTAPANALF 239 Query: 241 FDSVEYS 247 D V Y Sbjct: 240 LDKVYYE 246 >gi|315608004|ref|ZP_07882997.1| tRNA pseudouridine synthase A [Prevotella buccae ATCC 33574] gi|315250473|gb|EFU30469.1| tRNA pseudouridine synthase A [Prevotella buccae ATCC 33574] Length = 284 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 123/258 (47%), Gaps = 15/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q +EKA+ L+ + GAGRTD+GVHA Sbjct: 24 MQRYFIYLSYDGTNYHGWQIQPNGNSVQEELEKALSLLLRTKTEIVGAGRTDAGVHARLM 83 Query: 61 VAHFDLV----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 VAHFD ++ LC LN L ISI + V + HARFSA+ R Sbjct: 84 VAHFDYEVGTTTEGQEAKDIDCPQLCYKLNRLL--PRDISIRKIIPVAQDMHARFSAVAR 141 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +Y Y I T + P E+ ++ +P +LD + MR + L + DF F S Sbjct: 142 TYHYYIHTGKMP--FERHYSYQMPYALDFDAMREGCELLKRQTDFAAFCKAGADNKSTCC 199 Query: 171 TIDHF-DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ V + + A FL +R+ VG+L +G K T ++A R + Sbjct: 200 TVTEARWVKTSPETWYFEITANRFLRNMVRAVVGTLVDLGRHKITLDQFRHIVEAGRRSD 259 Query: 230 CGPLAPPEGLYFDSVEYS 247 G P L+ + VEY Sbjct: 260 AGESMPGHALFLERVEYP 277 >gi|150008550|ref|YP_001303293.1| tRNA pseudouridine synthase A [Parabacteroides distasonis ATCC 8503] gi|255014350|ref|ZP_05286476.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_7] gi|166228743|sp|A6LDA7|TRUA_PARD8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149936974|gb|ABR43671.1| tRNA pseudouridine synthase A [Parabacteroides distasonis ATCC 8503] Length = 252 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ V + GAGRTD+GVHA Sbjct: 1 MRRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLM 60 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +AHFD V L + LN L I++ + V + HARF A R+Y Y + T+ Sbjct: 61 IAHFDWEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + +P LD E M A + L DFT+F +H + I H Sbjct: 119 K--DPFNHELVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L Sbjct: 177 EGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVTYP 244 >gi|163756865|ref|ZP_02163974.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] gi|161323254|gb|EDP94594.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] Length = 250 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 123/246 (50%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q N S+Q IEKA+ ++ + + GAGRTD+GVHA + Sbjct: 1 MRYFIELSYNGEKYHGWQNQPNAISVQEVIEKALSILLRSNIAIVGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + L LN++L ++I + V + HARF A R+Y Y I++ + Sbjct: 61 AHFDTDVVFNRAELTFKLNSFL--PKDVAIQQIHTVKEDAHARFDATGRTYEYWIVSEKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A + K LD + M AA+ L DF F H + I ++ G Sbjct: 119 P--FYTQSAHTVYKKLDVDLMNKAAKKLFNYQDFKCFSKTHTDVKTYICQLEKAVWEQKG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + A FL +R+ VG+L VG GK + ++ + ++DR + G P + LY Sbjct: 177 ELLVFTIRADRFLRNMVRAIVGTLLEVGLGKLSIEGFKEIIASRDRNKAGTSVPGKALYL 236 Query: 242 DSVEYS 247 +V Y Sbjct: 237 TAVTYP 242 >gi|62184804|ref|YP_219589.1| tRNA pseudouridine synthase A [Chlamydophila abortus S26/3] gi|81313017|sp|Q5L6V3|TRUA_CHLAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62147871|emb|CAH63617.1| putative tRNA pseudouridine synthase a [Chlamydophila abortus S26/3] Length = 268 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ N SIQ IE ++ V G+ + V +GRTD+ VHA Q Sbjct: 1 MTQVVILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVGKRIPVTSSGRTDAEVHAFGQ 60 Query: 61 VAHFDLVREWV---PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF + K LNA L I I ++ + D +FH+RFSAI + Y Y + Sbjct: 61 VAHFSQPDHPQFSQASSIKKMLNALL--PKDIVIRDVVLGDDKFHSRFSAIAKEYRYVLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL E+ A+ L + M+ AQ+L+G HDF +F + +S IRT+ + D+ Sbjct: 119 RSPKPLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFANHGRDYTSTIRTLFNLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I FL+ +R+ VGSL + GK+ +++ L ++R++ P AP Sbjct: 179 VDHGETVTIICRGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILMQKNRRQGPPAAPSH 238 Query: 238 GLYFDSVEYS 247 L V Y Sbjct: 239 ALSLYHVCYP 248 >gi|313145437|ref|ZP_07807630.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] gi|313134204|gb|EFR51564.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] Length = 255 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 116/248 (46%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ V GAGRTD+GVHA V Sbjct: 7 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRRDTEVIGAGRTDAGVHASLMV 66 Query: 62 AHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 67 AHFDYEGEVLDTDKVTEKLNRLL--PQDISVYKVCRVRPDAHARFDATARTYKYYITTVK 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + I LD + M AA L DFT+F +H + I I H + Sbjct: 125 YP--FNRQYRYRIHNPLDFQKMNEAALTLFHYTDFTSFSKLHTDVKTNICKIMHAEWTQE 182 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + + ++ QDR + G AP L Sbjct: 183 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDGFRRIIEQQDRCKAGTSAPGNAL 242 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 243 FLVNVEYP 250 >gi|298530329|ref|ZP_07017731.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans ASO3-1] gi|298509703|gb|EFI33607.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans ASO3-1] Length = 247 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+GY GWQ QK+G +IQG +EKA+ + + VHG+GRTD+GVHAL QV Sbjct: 3 MRVRLTLAYDGTGYNGWQIQKDGLTIQGELEKALSRICSASIRVHGSGRTDAGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +++ V +ALNA L I +L+ + D++FHARFSA + Y Y + T+ A Sbjct: 63 AHFDPPPKFLNVPWNRALNAVL--PPGIRVLDFARTDRKFHARFSARAKQYSYTLWTQGA 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-- 179 ++ LD E M+ A L G HDF F + + + IRT+ + + Sbjct: 121 FFYPQRRNFVWNTGPLDLEAMQEATTCLTGSHDFNCFMNKGTEITDTIRTVRNILLAPGF 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL R+ V +L VG K + +L+ +Q +DR AP GL Sbjct: 181 TPQETVVWIQADGFLKQMARNIVSALVQVGRKKLSQAELKSIIQGRDRALAPATAPARGL 240 Query: 240 YFDSVEY 246 + V Y Sbjct: 241 CLEHVTY 247 >gi|42522098|ref|NP_967478.1| pseudouridylate synthase I [Bdellovibrio bacteriovorus HD100] gi|51316639|sp|Q6MQH6|TRUA_BDEBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39574629|emb|CAE78471.1| pseudouridylate synthase I [Bdellovibrio bacteriovorus HD100] Length = 262 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 8/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + + Y+G+G+ GWQ+QK + S+ IE+A+ V E + + +GRTD+GVHAL Sbjct: 3 TKVRFTVAYDGTGFCGWQKQKPEDQISVAQVIEEALSKVFNEKITLFASGRTDAGVHALN 62 Query: 60 QVAHFDLVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HF R+ P LC ALN++L +I I FHA SA ++Y Y I Sbjct: 63 QVCHFSTHRKIDPNKKWDLCWALNSHL--PPSIVAKKAWIAPDDFHATLSATHKTYRYLI 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + P A A + +D E+++ ++++L+G DF +F+S+ +R I D Sbjct: 121 VNKPRPSAHLNRYADWVRLPIDIEHLQESSKYLLGNQDFKSFQSVGTPVPDTVREIYKAD 180 Query: 177 VN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +++ + FL +R+ VG+ + + +++ + AQDR + GP AP Sbjct: 181 WEWRKPGVMQFTITGSGFLKQMVRNIVGTSLFLERKGLDPSKMQEIIAAQDRMKAGPPAP 240 Query: 236 PEGLYFDSVEYS 247 +GLY V Y Sbjct: 241 AQGLYLMKVYYP 252 >gi|325297315|ref|YP_004257232.1| tRNA pseudouridine synthase A [Bacteroides salanitronis DSM 18170] gi|324316868|gb|ADY34759.1| tRNA pseudouridine synthase A [Bacteroides salanitronis DSM 18170] Length = 268 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 117/248 (47%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M + Y+G+ Y GWQ Q NG+S+Q ++KA+ + V V GAGRTD+GVHA Sbjct: 1 MARYFMYLGYDGTNYHGWQIQPNGASVQEELQKALSTLMRRPVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ I LN L I++ + V HARF A R Y Y + T + Sbjct: 61 VAHADIDALADAAIWVGKLNRLL--PPDIAVYRMRRVADDAHARFDATYRKYQYHVTTSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW + + LD M AA L DFT+F +H + I + Sbjct: 119 NP--FLRHYAWRVFQPLDFGRMNEAASVLFEYTDFTSFSKLHTDVKTNNCRILYARWEQT 176 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + A FL +R+ VG+L VG GK T + ++A++R G P L Sbjct: 177 GADEWVFTIQADRFLRNMVRAVVGTLVEVGRGKLTIEGFRRVIEAKNRCSAGTSVPGNAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVGYP 244 >gi|296535340|ref|ZP_06897543.1| tRNA-pseudouridine synthase I [Roseomonas cervicalis ATCC 49957] gi|296264339|gb|EFH10761.1| tRNA-pseudouridine synthase I [Roseomonas cervicalis ATCC 49957] Length = 267 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 147/247 (59%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +++E++G+ + GWQRQ +G S+Q +E+A + G+ AGRTDSGVHA Sbjct: 15 MPRYALLVEFDGAPFVGWQRQPSGLSVQQVLEEAASPLNQGQPAATQAAGRTDSGVHAEG 74 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V D+ + PV L +ALN + + +++L +++ ++ ARFS I R+Y YRI+ R Sbjct: 75 MVVQIDIAQALDPVRLREALNYHTR-PHPVAVLGVAVPPAEWSARFSCIGRAYRYRILNR 133 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL+ GR W + +LD M AAQ L+G+HDF+ FR+ CQA +RT+D DV Sbjct: 134 RPRPALQAGRVWHVGPALDAAAMHAAAQGLLGKHDFSAFRAASCQAKHALRTLDRLDVRR 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I ARSFLH Q+R+ VG+L VG G+ + L+A++R + G AP EGL Sbjct: 194 EGEEVVIHTAARSFLHHQVRNMVGTLAQVGLGRQGVDWPRRLLEARERSQAGQTAPAEGL 253 Query: 240 YFDSVEY 246 F Y Sbjct: 254 TFLEARY 260 >gi|329894995|ref|ZP_08270775.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC3088] gi|328922563|gb|EGG29899.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC3088] Length = 274 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 121/245 (49%), Gaps = 3/245 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +EYNGS + GWQRQ ++Q ++E A+ + V V AGRTDSGVHA QV Sbjct: 14 LALAVEYNGSLFHGWQRQGGTDQTVQATLEAALSQIANHDVRVACAGRTDSGVHATSQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F NA L T+ + V +FHARFSAI+R+Y Y ++ Sbjct: 74 SFKAPVSRSLKAWVVGSNAVL--PPTVRVHWACAVPDEFHARFSAIQRTYRYVWCVQEVR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + +L + M AAQ L+G DF+ FR+ CQ+++P R + V G Sbjct: 132 PTSLLKQVTWSRNALCSQTMNEAAQSLLGEQDFSAFRAASCQSNTPFREVQAVSVVGRGP 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +FLH +R+ GSL LVG G + + LQ +DR A P+GLY Sbjct: 192 FVVMEIRANAFLHHMVRNIAGSLSLVGRGLKPVDWIAQLLQGKDRTVAADTASPDGLYLT 251 Query: 243 SVEYS 247 SV Y Sbjct: 252 SVAYP 256 >gi|56751899|ref|YP_172600.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 6301] gi|60416392|sp|O24712|TRUA_SYNP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56686858|dbj|BAD80080.1| tRNA pseudouridine synthase [Synechococcus elongatus PCC 6301] Length = 294 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 108/247 (43%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVHA QV Sbjct: 14 QRIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHAAAQV 73 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ LN L I +IV +HARFSA R Y Y I T Sbjct: 74 AHFETTSPIPAHRWPSVLNGRLTPDLNIR--AAAIVPANWHARFSASYRRYRYTIYTDPC 131 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W + L M+ A Q LVG H F+ + + V Sbjct: 132 PNLFLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHAWVHVQDAWVRRR 191 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LIEI V A FL+ IR VG L VG+G + Q R APP+GL Sbjct: 192 DSLIEIEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHAAPPQGLC 251 Query: 241 FDSVEYS 247 + Y Sbjct: 252 LLRIGYP 258 >gi|262383400|ref|ZP_06076536.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_33B] gi|262294298|gb|EEY82230.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_33B] Length = 265 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 119/247 (48%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA + Sbjct: 15 RRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALATLMRKPVPIVGAGRTDAGVHARLMI 74 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + L + LN L I++ + V + HARF A R+Y Y I TR+ Sbjct: 75 AHFDWEGPIEDLAFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYITTRK 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD E M A + L DFT+F +H + I H Sbjct: 133 --DPFNYELVYKFPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQE 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L+ Sbjct: 191 GDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALF 250 Query: 241 FDSVEYS 247 V Y Sbjct: 251 LVDVTYP 257 >gi|227871757|ref|ZP_03990163.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] gi|227842397|gb|EEJ52621.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] Length = 265 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y G+ Y G+Q+Q+ S+I G++E+ + L ++ GA RTD GVHAL Sbjct: 10 QRIVLKLAYEGTSYHGFQKQEGLSTIAGTVEEQLRNLFPWKMENFIGASRTDQGVHALGN 69 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD + + +ALN+YL + I ++ V + FH RF+ R++Y Y I + Sbjct: 70 LLSFDTEGKVSGEQILRALNSYL--PEDIRVMEAYSVQQDFHPRFTPHRKAYRYSICRSK 127 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA----SSPIRTIDHFD 176 L + A+ LDC + + L G HDF +F + Q+ S +R I F Sbjct: 128 VENPLRRRTAYHYTFPLDCGKISEGMELLKGEHDFRSFANPKAQSLLQGGSSVREIYRFS 187 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+ + V FL+ IR G+L +G G+ + + LE+ L+ +DR GP AP Sbjct: 188 MEEEGDYLHFSVEGNGFLYHMIRILAGTLLELGRGRISLSQLEEILEKKDRTLAGPTAPA 247 Query: 237 EGLYFDSVEY 246 +GL +++Y Sbjct: 248 KGLCLMNLDY 257 >gi|17231681|ref|NP_488229.1| tRNA pseudouridine synthase A [Nostoc sp. PCC 7120] gi|42559852|sp|Q8YPK5|TRUA_ANASP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17133324|dbj|BAB75888.1| tRNA-pseudouridine synthase I [Nostoc sp. PCC 7120] Length = 282 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 118/247 (47%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++++Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QV Sbjct: 11 QRVALVVQYLGTHFHGWQRQKQHRTVQEEIETAIAKILGHHVTLHGAGRTDSGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +N+YL I I + V ++HARFSA R Y Y I T Sbjct: 71 AHFDATGLIPAHKWASVINSYL--PKDILIKASAAVGDRWHARFSAAYRRYRYTIYTEDR 128 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +W LD M+ A + L+G+H F + S + + + Sbjct: 129 PNLFVTPFSWHYYYAPLDESLMQAALKPLMGKHHLAAFHRAGSKRSHSWVEVQAVECHRS 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A FL+ +R VG L VG G+ T + + + Q R+E AP +GL Sbjct: 189 GPFIHIEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPSQGLC 248 Query: 241 FDSVEYS 247 V Y Sbjct: 249 LLRVGYP 255 >gi|227872273|ref|ZP_03990632.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] gi|227841885|gb|EEJ52156.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] Length = 249 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 5/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 Y +I+ Y+GS YFG+++QK+ +IQG +E + G E V + GA RTD+GVHA Sbjct: 4 NYKLIVAYDGSRYFGFEKQKDQEATIQGKLEGVFSRIPGNEEGVEIIGASRTDAGVHARG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A+ L E + N YL + I+I+++ V +FHAR++A+ + Y Y Sbjct: 64 MCANVFLDTELSEEEILDYGNRYL--PEDIAIVSVKKVSPRFHARYNALGKIYRYSCYIG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + + D E M+ AA+ L+G+ DF +F S IR+I + Sbjct: 122 RTKPVFDRKILLHLEEEPDLEAMQEAAKFLIGKQDFKSFCGNPKMKKSTIRSISSIRIQK 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 NL+ FL QIR VG+L VG K + D+ + A+DR++ G P +GL Sbjct: 182 SQNLLRFYFEGSGFLQYQIRIMVGTLLEVGYHKRKAGDIPGIIDAKDRQQAGYTVPAKGL 241 Query: 240 YFDSVEYS 247 V Y Sbjct: 242 CLMKVLYD 249 >gi|255007737|ref|ZP_05279863.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] Length = 252 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 116/248 (46%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ V GAGRTD+GVHA V Sbjct: 4 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRRDTEVIGAGRTDAGVHASLMV 63 Query: 62 AHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + + LN L IS+ + V HARF A R+Y Y I T + Sbjct: 64 AHFDYEGEVLDTDKVTEKLNRLL--PQDISVYKVCRVRPDAHARFDATARTYKYYITTVK 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + I LD + M AA L DFT+F +H + I I H + Sbjct: 122 YP--FNRQYRYRIHNPLDFQKMNEAALTLFHYTDFTSFSKLHTDVKTNICKIMHAEWTQE 179 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + + ++ QDR + G AP L Sbjct: 180 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDGFRRIIEQQDRCKAGTSAPGNAL 239 Query: 240 YFDSVEYS 247 + +VEY Sbjct: 240 FLVNVEYP 247 >gi|282859476|ref|ZP_06268581.1| tRNA pseudouridine synthase A [Prevotella bivia JCVIHMP010] gi|282587704|gb|EFB92904.1| tRNA pseudouridine synthase A [Prevotella bivia JCVIHMP010] Length = 255 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 82/259 (31%), Positives = 119/259 (45%), Gaps = 17/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NGSS+Q ++EKAI ++ E + + GAGRTD+GVHA Sbjct: 1 MQRYFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLREPIAIIGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V HARFSA RR+Y Y + T++ Sbjct: 61 VAHFDFTGSVDCHQMVYRLNRLL--PHDISVSKIEPVTNDLHARFSASRRTYHYYLHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--- 177 ++ + + +LD + M AAQ+L+G DF F + I + Sbjct: 119 --NIYQRQYSCYMSYALDFDLMNEAAQYLIGTKDFKCFCKAGADVKTTICELTEARWVPI 176 Query: 178 ----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + A FL +R+ VG+L VG GK + + + R Sbjct: 177 RAELSMPLSSKEQPTDWCFIISANRFLRNMVRAVVGTLVDVGRGKLSLEAFKAIVDGGTR 236 Query: 228 KECGPLAPPEGLYFDSVEY 246 + G P L+ V Y Sbjct: 237 SDAGESMPGNALFLWEVIY 255 >gi|325287217|ref|YP_004263007.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] gi|324322671|gb|ADY30136.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] Length = 251 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 122/246 (49%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQ Q N ++Q +EKA + E + + GAGRTD+GVHA + Sbjct: 1 MRYFVAFSYFGAAYHGWQIQPNAITVQEELEKAFSTLLKEKISLMGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ V L + LN++L D I+I N+ V + HARF+A R+Y Y I T++ Sbjct: 61 AHFNTTPISNTVDLMRRLNSFL--PDDIAIQNIYEVPEDAHARFNATERTYEYLITTQKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ I + LD E M AAQ L+G+ DF F + T+ Sbjct: 119 PFSIV--TTHYIKQKLDIEKMNKAAQLLLGKQDFECFSKSKTDVKTYYCTVKKAIWEQKE 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG GK T + + ++ R E G P + LY Sbjct: 177 DKFVFTITADRFLRNMVRAIVGTLLDVGTGKITIDHIHTIIASKSRAEAGTSVPAKALYL 236 Query: 242 DSVEYS 247 V Y Sbjct: 237 TQVLYP 242 >gi|157414138|ref|YP_001485004.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9215] gi|166991165|sp|A8G737|TRUA_PROM2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157388713|gb|ABV51418.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9215] Length = 268 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+G Y GWQ+QKN +++Q +E A+F +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGYHYSGWQKQKNATTVQEILESALFKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN L TI IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDSVIPGFSYSNILNNLL--PSTIRILESVEVKNSWHACYSAVYRHYRYVINNGK 118 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD M A++ + G HDF F+ + + I + D+ Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLHASKTMEGEHDFFAFQKSGSNRRNSVTLIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K +S + + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISSDIFIDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEYS 247 F + Y Sbjct: 239 CFVNAVYE 246 >gi|284929586|ref|YP_003422108.1| pseudouridylate synthase I [cyanobacterium UCYN-A] gi|284810030|gb|ADB95727.1| pseudouridylate synthase I [cyanobacterium UCYN-A] Length = 281 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 117/246 (47%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R +II+Y+G+ + GWQRQ ++Q IE I G V +HGAGRTD+GVHA QVA Sbjct: 13 RIALIIQYSGNRFHGWQRQPYRRTVQADIENTITKSLGYKVSIHGAGRTDAGVHATGQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD P L + LN YL + I I N V +HARFSA R Y Y + T Sbjct: 73 HFDYAGPIPPKSLARVLNRYL--PEDILIRNSKEVSINWHARFSAQWRRYRYTLYTNNDC 130 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K +W + L ++M A + L+G H T FR Q + I + G Sbjct: 131 NLLIKSYSWHYYRYPLKVKSMLDALKSLLGTHHLTAFRKKGSQRNHSWVEIQDVECYRKG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ +R +G L VG K + + + + Q R+ AP GL Sbjct: 191 AFIHIEIQANGFLYGMVRLLMGMLVEVGIDKLSLANFNQIWRDQKREYVRHSAPANGLCL 250 Query: 242 DSVEYS 247 V Y Sbjct: 251 LGVGYP 256 >gi|329942480|ref|ZP_08291290.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Cal10] gi|332287117|ref|YP_004422018.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] gi|313847713|emb|CBY16703.1| putative tRNA pseudouridine synthase a [Chlamydophila psittaci RD1] gi|325507334|gb|ADZ18972.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] gi|328815390|gb|EGF85378.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Cal10] gi|328914357|gb|AEB55190.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] Length = 268 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ N S+Q IE ++ V G+ + V +GRTD+GVHA Q Sbjct: 1 MTQVVLLLAYQGTAYAGWQRQPNDLSVQEVIENSLTKVVGKRIHVTSSGRTDAGVHAFGQ 60 Query: 61 VAHFD---LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF R + K LNA L I I ++ + D FH+RFSAI + Y Y + Sbjct: 61 VAHFPQPDHPRFSQASGIKKMLNALL--PKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL E+ ++ L + M+ A++L+G HDF +F + +S IRT+ + D+ Sbjct: 119 RSPKPLPWERYFSYYPRHHLRTDLMQEGAKYLIGTHDFASFANHGRDYTSTIRTLFNLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I FL+ +R+ VGSL + GK+ +++ L ++R++ P AP Sbjct: 179 VDNGETVTIICKGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRRKGPPAAPSY 238 Query: 238 GLYFDSVEYS 247 L V Y Sbjct: 239 ALSLYHVCYP 248 >gi|149370146|ref|ZP_01889997.1| tRNA pseudouridine synthase A [unidentified eubacterium SCB49] gi|149356637|gb|EDM45193.1| tRNA pseudouridine synthase A [unidentified eubacterium SCB49] Length = 259 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + I YNG+ Y GWQ+Q + ++Q IE + V + V GAGRTD+GVHA + Sbjct: 8 RYFLEIAYNGAKYCGWQKQPDAKTVQQEIEYFLSTVLRQDVTTMGAGRTDTGVHARQMFL 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ + N++L IS+LN V HARF+AI R Y Y + + P Sbjct: 68 HFDVSKSISIPNFLYKANSFL--PPDISVLNYYEVLDDHHARFNAIAREYEYYVSVVKDP 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 +++ A+ + D M AA L+ DF +F + + + + + GN Sbjct: 126 FSIDS--AYYLKNFPDINLMNEAASSLLTYSDFQSFSKVRTEVKTFNCNVTKAEWILNGN 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ + A FL +RS VG+L VG GK T D + +++R G P GLY Sbjct: 184 MLIFTISADRFLRNMVRSIVGTLLEVGSGKITIEDFHNIIASKNRSNAGISVPAHGLYLT 243 Query: 243 SVEYS 247 V Y Sbjct: 244 KVIYP 248 >gi|319654901|ref|ZP_08008976.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2] gi|317393464|gb|EFV74227.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2] Length = 269 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 3/226 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ I Y+G+ + G+Q Q ++QG +E+A+ + GE + V +GRTD+GVHA Sbjct: 1 MQRFKCNITYDGTHFAGYQVQPGKRTVQGELERALKKLHKGEDIKVTASGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L D ++I+ V FH RF A + Y Y + Sbjct: 61 QVIHFDSPLNIPIEKWEIALNSLL--PDEVAIVGAETVPDDFHVRFDAKGKEYRYFVHCS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ A+ L+ + ++ AA L+G HDFT+F S + +R + +V Sbjct: 119 SRRDPFKRHYAYQYSYPLNTDAIKQAAADLIGTHDFTSFCSAKTEVEDKVRELQEIEVQE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +++ R FL+ +R G+L VG G+ + L+ + Sbjct: 179 KEDMLIFRFRGTGFLYNMVRILAGTLLEVGSGERDPDSMPSVLKEK 224 >gi|126663837|ref|ZP_01734832.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BAL38] gi|126624101|gb|EAZ94794.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BAL38] Length = 248 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG + G+Q Q + SS+Q ++EKA+ + E + + GAGRTDSGVHA + Sbjct: 1 MRYFIEFAYNGKNFHGFQSQPDASSVQETLEKALSTLFREKIAIVGAGRTDSGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ E LN++L +I + + V HARF A R+Y Y + T Sbjct: 61 AHFETELELDSEYWSHKLNSFL--PPSIVVYRIFKVTDNAHARFDASSRTYEYYMHT--F 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A +W L+ + M A L +DF F +H ++ I G Sbjct: 117 KDAFITDGSWYHSHQLNLDKMNEACAILFEYNDFECFSKVHTDVNTFNCKISEAHWKQVG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG++ +G GK DL +++++R + G P GLY Sbjct: 177 NQLIFTITADRFLRNMVRAIVGTMVNIGLGKIEVADLRTIIESKNRGKAGFSVPAHGLYL 236 Query: 242 DSVEYS 247 +V Y Sbjct: 237 VNVRYP 242 >gi|319938474|ref|ZP_08012868.1| pseudouridylate synthase [Coprobacillus sp. 29_1] gi|319806390|gb|EFW03057.1| pseudouridylate synthase [Coprobacillus sp. 29_1] Length = 244 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G+Q Q ++QG I+KA+ + E V++H +GRTD+ VHA+ QV Sbjct: 1 MRVKCVVSYDGSRFHGFQVQDKERTVQGEIQKALKKINEEEVIIHASGRTDAKVHAVHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ P +A+N ++ + I IL+ S D +FH+R+SAI++ Y Y + T++ Sbjct: 61 FHFDTKKDLPPQQWKRAINHFM--PNDIYILDASYTDDEFHSRYSAIKKEYRYLLSTKEY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + + LD E MR A+Q +G H+F +F S Q + IRT+ FD+ Sbjct: 119 -NPFDTNYVFQYGRQLDIELMREASQIFIGEHNFASFCSYD-QYGNTIRTLYTFDIVEED 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I R++ F +R VG + VG + + L + L++ K+C A P+GLY Sbjct: 177 GIITFRLIGNGFRRYMVRHLVGGIIQVGAKRISKEILSEMLESCGTKKCLFKAKPQGLYL 236 Query: 242 DSVEYS 247 V Y Sbjct: 237 QEVYYE 242 >gi|81301016|ref|YP_401224.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 7942] gi|81169897|gb|ABB58237.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 7942] Length = 294 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 108/247 (43%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVHA QV Sbjct: 14 QRIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHAAAQV 73 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ LN L I +IV +HARFSA R Y Y I T Sbjct: 74 AHFETTSPIPAHRWPSVLNGRLTPDLNIR--AAAIVPANWHARFSASYRRYRYTIYTDPC 131 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W + L M+ A Q LVG H F+ + + V Sbjct: 132 PNLFLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHAWVHVQDAWVRRR 191 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LIEI V A FL+ IR VG L VG+G + Q R APP+GL Sbjct: 192 DSLIEIEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHAAPPQGLC 251 Query: 241 FDSVEYS 247 + Y Sbjct: 252 LLRIGYP 258 >gi|163847952|ref|YP_001635996.1| tRNA pseudouridine synthase ACD [Chloroflexus aurantiacus J-10-fl] gi|222525832|ref|YP_002570303.1| tRNA pseudouridine synthase ACD [Chloroflexus sp. Y-400-fl] gi|189030130|sp|A9WH95|TRUA_CHLAA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789612|sp|B9LJG1|TRUA_CHLSY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163669241|gb|ABY35607.1| tRNA pseudouridine synthase A [Chloroflexus aurantiacus J-10-fl] gi|222449711|gb|ACM53977.1| tRNA pseudouridine synthase A [Chloroflexus sp. Y-400-fl] Length = 278 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 125/251 (49%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++ Y+G+ + G Q Q + ++QG++E A +T E + AGRTD+GVHA Q Sbjct: 1 MRTIALLLAYDGTDFAGSQWQTDIRTVQGALESAWEALTQERRRIVLAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH + + LNA+L ++I N+ FHARFSAI+R Y Y I Sbjct: 61 VAHVQTTTRHNLQTIWRGLNAHL--PVDLAIQNVGEAVPDFHARFSAIQREYRYLIDCAA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + + +LD M A + L G HDF F + S +RT+ V + Sbjct: 119 APLPQLRHQVLHYAGTLDVAAMTAALKLLEGTHDFAAFTTATPAQRSTVRTMYWTRVGDY 178 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L+ I V A +FL +R VG+L LVG G+ T + L ++DR+ GP AP Sbjct: 179 EWFERRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPA 238 Query: 237 EGLYFDSVEYS 247 GL +V Y Sbjct: 239 HGLTLTAVRYP 249 >gi|282890956|ref|ZP_06299470.1| hypothetical protein pah_c032o038 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499171|gb|EFB41476.1| hypothetical protein pah_c032o038 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 254 Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +II Y+G + GWQ+ G SI+ ++E + + E +++ A RTD+GVHA Q Sbjct: 1 MKNIRLIISYDGGRFLGWQKTSMGPSIEENLENVLHQILQEPIILQAASRTDAGVHAHEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +LN L I +L+ I FH + + Y Y I T Sbjct: 61 VVNFFTEKPIDLNKITNSLNRLL--PKDIVVLDAQIAPDHFHPTLDCLSKEYRYYISTGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFDVN 178 + AW P LD E ++ AA+ LVG HDF+ F ++ S +R + + ++ Sbjct: 119 IQPPNHRFYAWHCPGHLDKELIKKAAEQLVGTHDFSAFCNLKPSESYTHHVREVLNIQIH 178 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + +V+ +SFL+ +R+ VG+L VG GK D+ L +DR + G AP Sbjct: 179 ETDAHHFYFQVMGKSFLYKMVRNIVGTLIFVGKGKLRCEDIPLLLSCRDRTKIGMTAPAH 238 Query: 238 GLYFDSVEY 246 GL + Y Sbjct: 239 GLTLYRLNY 247 >gi|255281297|ref|ZP_05345852.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] gi|255268254|gb|EET61459.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] Length = 280 Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 35/278 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT--------------------- 39 + + + Y+G+ Y GW+ + +IQG +E + + Sbjct: 3 QNFKLTVTYDGTRYHGWEAKPGIEMTIQGKLEAVLTKMLAFPDDVPVQSLIAPAASVVSC 62 Query: 40 -----------GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDT 88 V V GAGRTD+GVHA A+ L +P + LN YL + Sbjct: 63 NPGAADGMPGCPVPVKVIGAGRTDAGVHAREMTANVHLDTAMLPGDIRDYLNRYL--PED 120 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I + + IV +FH+R++A ++Y Y T ++ +++ K+ D M+ AA + Sbjct: 121 ICVREVCIVSDRFHSRYNATGKTYRYTCFTGPLKPVFDRKYVYVLDKTPDIAAMKKAAGY 180 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 L G HDF +F S +RTID ++ + + FL +R G+L Sbjct: 181 LCGTHDFASFCGNPKMKKSTVRTIDSIEITQNNSYLYFMYHGNGFLQHMVRILTGTLLET 240 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G G+ + + + L A+ R G LAP +GL V+Y Sbjct: 241 GYGRRSPESMPELLAARKRALAGFLAPAQGLCLMKVDY 278 >gi|315919940|ref|ZP_07916180.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] gi|313693815|gb|EFS30650.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] Length = 260 Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 115/241 (47%), Gaps = 5/241 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA VAHFD Sbjct: 1 MAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLMVAHFDSD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + LN L ISI + V H RF A R+Y Y + T + P + Sbjct: 61 ELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDAHVRFDATARTYKYYVTTSKYP--FNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEI 186 W + L+ E M AA L +DFT+F +H + I I H + + Sbjct: 117 QYRWRLYNQLNYERMNEAAHILFEYNDFTSFSKLHTDVKTNICHITHAEWTQEEDATWVF 176 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L+ +VEY Sbjct: 177 TIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQALFLVNVEY 236 Query: 247 S 247 Sbjct: 237 P 237 >gi|169350826|ref|ZP_02867764.1| hypothetical protein CLOSPI_01600 [Clostridium spiroforme DSM 1552] gi|169292412|gb|EDS74545.1| hypothetical protein CLOSPI_01600 [Clostridium spiroforme DSM 1552] Length = 243 Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R I+ Y+GS ++G+Q Q ++QG I+KA+ + E V +H +GRTD+ VH +Q Sbjct: 1 MVRVKCIVSYDGSKFYGFQIQNKLRTVQGEIQKALKKICEEEVTIHASGRTDAKVHGNKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD +R+ +A+N +L + I IL+ V + FH+R+SA ++ Y Y + T++ Sbjct: 61 VFHFDTLRQMPEKQWKRAINHFL--PNDIYILDSLFVSEDFHSRYSATKKEYRYLLSTKE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E M+ AA +G HDF +F S Q + IR + + Sbjct: 119 Y-SPFETNYIYQYGRPLDLELMKDAANIFIGEHDFASFCSYD-QYGNTIRELYKILIEDN 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I +V F +R VG L VG + T L++ L ++ +++C A P+GLY Sbjct: 177 NGIITFTIVGNGFRRYMVRHIVGGLIQVGAKRITKKRLQEFLDSKGKEKCLFKAKPQGLY 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LYEVFYD 243 >gi|194477033|ref|YP_002049212.1| tRNA pseudouridine synthase A [Paulinella chromatophora] gi|171192040|gb|ACB43002.1| tRNA pseudouridine synthase A [Paulinella chromatophora] Length = 252 Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R + ++Y GS Y GWQRQ+N S+Q +E+A+ + + ++ AGRTD+GVHA Sbjct: 1 MKRIALCLQYEGSSYCGWQRQRNALSVQEVLEEALLALGCDKPIISFAAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN YL +I L + V +HA +SA+ R Y Y ++ Sbjct: 61 QVVHFDTNSPIPTDSWASALNGYL--PSSIRALKATSVPNNWHACYSAVYRRYRYTLLNS 118 Query: 120 QAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P +W + LD MR + +G HDF+ F+ S TI + Sbjct: 119 REPDLFIAPYSWHRYDTVLDENAMRRSLLTFLGTHDFSAFQRSGSDRISTRTTIQEVSLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I + + A FL+ +R V L VG+G+ T ++LE+ + R + AP +G Sbjct: 179 RYDEKITLEIQASGFLYGMVRLMVAQLVEVGEGRLTESNLEQRWRQHCRGQIKEAAPAQG 238 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 239 LCLLQVGYP 247 >gi|300870453|ref|YP_003785324.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli 95/1000] gi|300688152|gb|ADK30823.1| tRNA-pseudouridine synthase, TrmA [Brachyspira pilosicoli 95/1000] Length = 247 Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 4/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+Y+G+ +FGWQ Q N ++QG I KA+ + + ++G GRTD+GVHAL Q Sbjct: 1 MTNIKITIQYDGTDFFGWQIQPNLRTVQGEIYKAVQKIYSKKSTIYGCGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + + VP + +ALN+ L I I+ +VD F+AR SA R Y+Y + Sbjct: 61 VANFRVEKMLVPIERVTRALNSAL--PKDIRIIKSEVVDDSFNARASATFREYIYVVQNS 118 Query: 120 QAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + +W K++ + + + A++LVG H+FT+F S + S R I+ Sbjct: 119 DISVPFYERYSWFYRKNIINEKLINEYAKYLVGEHNFTSFCSTEDENDSKFRYIERVRAI 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I + +FLH +R VG+L +E+ L+ +DR AP G Sbjct: 179 RKKDTIYFIIRGNAFLHNMVRIIVGTLVEGQRKNMPVNFIEEILKKEDRTLAFVTAPAHG 238 Query: 239 LYFDS 243 LYF Sbjct: 239 LYFRR 243 >gi|162147913|ref|YP_001602374.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|209542530|ref|YP_002274759.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|161786490|emb|CAP56072.1| putative tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|209530207|gb|ACI50144.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 114/249 (45%), Positives = 152/249 (61%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R+ + IEY+G + GWQRQ G S+Q +E+A + G +V AGRTD+GVHA Q Sbjct: 7 QRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGVHATGQ 66 Query: 61 VAHFDLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AH D + ALN ++K +++L VD ++ ARFSAIRRSY YRI+ Sbjct: 67 AAHLDFPGDVRLNDSTVRDALNFHMK-PYPVAVLRACPVDTEWSARFSAIRRSYRYRILN 125 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R++ L+ GR WL+ ++LD M AA+ L+GRHDFT+FR+ CQA SP+RT+D V Sbjct: 126 RRSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRASACQARSPLRTLDRLGVV 185 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I I ARSFLH Q+R+ VG+LKLVG+G W + AL A DR+ GP APP+G Sbjct: 186 RQGEEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPPDG 245 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 246 LYLTGVGYD 254 >gi|169824810|ref|YP_001692421.1| tRNA pseudouridine synthase A [Finegoldia magna ATCC 29328] gi|238687759|sp|B0S2E1|TRUA_FINM2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167831615|dbj|BAG08531.1| tRNA pseudouridine synthase A [Finegoldia magna ATCC 29328] Length = 244 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA Q Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +N + SD+I I+ +D FHARFSA ++Y Y + + Sbjct: 61 VCNFIVDTDISANQFLMGVNHF--TSDSIVIVKSEEMDLDFHARFSAKSKTYKYILCNKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD + + L+G+HDFT+F + + +P+RTID + Sbjct: 119 YMEPWFNDYKGHRKYYLDFDLLLKCRDMLIGKHDFTSFVNDLEEDINPVRTIDEITIEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GLY Sbjct: 179 DDDIVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGLY 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LMDIEY 244 >gi|225164227|ref|ZP_03726501.1| tRNA-pseudouridine synthase I [Opitutaceae bacterium TAV2] gi|224801166|gb|EEG19488.1| tRNA-pseudouridine synthase I [Opitutaceae bacterium TAV2] Length = 354 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 123/250 (49%), Gaps = 6/250 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + Y+G+ + GWQ Q +G++IQ +E+ + + GE V +HG+GRTD+GVHA QV Sbjct: 100 RWKCTVAYDGTHFSGWQSQPDGNAIQDHLERRLARMLGESVRIHGSGRTDAGVHARAQVF 159 Query: 63 HFDLVREWVPVILCKALNA-----YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD P L A + + I + + IV FHARF A + Y Y + Sbjct: 160 HFDAAWRHGPERLLAAFRSGGGEGGGGVPSGIQVTDARIVSAAFHARFDATGKRYTYDLH 219 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFD 176 + W IP+ LD MR AA LVGRHDF F + + + +R + D Sbjct: 220 HGGFADPFTQDYCWSIPQKLDVVAMRAAAALLVGRHDFCAFSALSGEERETTVRHLTQLD 279 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +++ G I I A FL+ +R VG+L G GK T D+ + L R AP Sbjct: 280 ISARGARIRITARADGFLYRMVRRLVGALVHAGLGKLTPGDIAQILSEARRTPRIETAPA 339 Query: 237 EGLYFDSVEY 246 GL+ D V Y Sbjct: 340 HGLFLDRVFY 349 >gi|298373324|ref|ZP_06983313.1| tRNA pseudouridine synthase A [Bacteroidetes oral taxon 274 str. F0058] gi|298274376|gb|EFI15928.1| tRNA pseudouridine synthase A [Bacteroidetes oral taxon 274 str. F0058] Length = 247 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG+ Y GWQ Q N ++Q ++ +A+ +V G V + GAGRTD+GVHA Sbjct: 1 MRYFIYIAYNGTNYHGWQIQPNAVTVQETVGQAMSVVLGSNVEITGAGRTDTGVHARTMT 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFDL + L K LN+ L I++ + V + HARFSA+ R+Y Y + + Sbjct: 61 AHFDLTKRIDEANLVKRLNSLL--PADIAVYKIVEVIPEAHARFSAMSRTYEYLLYLDKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +G A+ + LD E M IAA + DFT+F +H + T+ + + Sbjct: 119 P--FLRGLAYRHYRDLDFEKMNIAANKMRDYTDFTSFAKLHTDTRTNNCTVSKAEWHKQD 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+ +VA FL +R+ VG+L LVG+G+ T D + ++A+DR++ G +GLY Sbjct: 177 NIWIFTIVADRFLRDMVRATVGTLILVGEGRITVDDFCRIIEAKDRQKAGQSIDAQGLYL 236 Query: 242 DSVEYS 247 ++Y Sbjct: 237 TDIQYP 242 >gi|218249502|ref|YP_002374546.1| tRNA pseudouridine synthase A [Borrelia burgdorferi ZS7] gi|224532546|ref|ZP_03673169.1| tRNA pseudouridine synthase A [Borrelia burgdorferi WI91-23] gi|226322073|ref|ZP_03797598.1| tRNA pseudouridine synthase A [Borrelia burgdorferi Bol26] gi|226708642|sp|B7J0V1|TRUA_BORBZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1665842|emb|CAA70351.1| pseudouridylate synthase I [Borrelia burgdorferi] gi|2911585|emb|CAA11967.1| pseudouridylate synthase I [Borrelia burgdorferi] gi|218164690|gb|ACK74751.1| tRNA pseudouridine synthase A [Borrelia burgdorferi ZS7] gi|224512489|gb|EEF82867.1| tRNA pseudouridine synthase A [Borrelia burgdorferi WI91-23] gi|226232663|gb|EEH31417.1| tRNA pseudouridine synthase A [Borrelia burgdorferi Bol26] Length = 246 Score = 261 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIMGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 + V Y Sbjct: 240 LERVYYE 246 >gi|229829433|ref|ZP_04455502.1| hypothetical protein GCWU000342_01523 [Shuttleworthia satelles DSM 14600] gi|229791864|gb|EEP27978.1| hypothetical protein GCWU000342_01523 [Shuttleworthia satelles DSM 14600] Length = 325 Score = 261 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 81/301 (26%), Positives = 120/301 (39%), Gaps = 56/301 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------------EIVVVHGA 48 M Y + I Y+G+ Y GW+ Q +IQG +E+A+ + G V + GA Sbjct: 27 MQNYRLKIAYDGTRYAGWEHQPGQETIQGKLEQALARMCGLAMDERDFMRPDTPVKLIGA 86 Query: 49 GRTDSGVHALRQVAHF------------------------------------------DL 66 GRTD+GVHA VA + Sbjct: 87 GRTDAGVHARGMVASIAFEAPAYRPGPWERRESKGRDRGNQPGNMTWQAEPSAQLTRRNQ 146 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 R + LN YL D IS++ +FHAR+ A+ ++Y Y + Sbjct: 147 PRSMTCQEMQDYLNHYL--PDDISVVAFKEAAARFHARYKAVGKTYQYTAFDGRVKPVFN 204 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + + + LD M+ AA L+G HDF +F S +R +D ++ + Sbjct: 205 RRYYTPLEEELDVSAMQEAANCLLGEHDFRSFCGNPKMKKSTVRRVDRIEIRRSKGYVYF 264 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 FL +R VG+L VG + D+EK L+A+DRK GP AP GL V+Y Sbjct: 265 SFHGTGFLQNMVRILVGTLMEVGWHRMRPQDVEKILEARDRKAAGPTAPARGLCLIRVDY 324 Query: 247 S 247 Sbjct: 325 D 325 >gi|15594358|ref|NP_212146.1| tRNA pseudouridine synthase A [Borrelia burgdorferi B31] gi|3915171|sp|P70830|TRUA_BORBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2687883|gb|AAC66394.1| pseudouridylate synthase I (hisT) [Borrelia burgdorferi B31] Length = 246 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA +Q Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 + V Y Sbjct: 240 LERVYYE 246 >gi|296121106|ref|YP_003628884.1| tRNA pseudouridine synthase A [Planctomyces limnophilus DSM 3776] gi|296013446|gb|ADG66685.1| tRNA pseudouridine synthase A [Planctomyces limnophilus DSM 3776] Length = 305 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 79/264 (29%), Positives = 115/264 (43%), Gaps = 23/264 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + I Y+G+ Y GWQ Q NG SIQ ++ +AI T E V++ AGRTD+GVHA+ QV Sbjct: 8 LKLTIAYDGTAYCGWQTQPNGVSIQSTLMQAIQEFTAETPVLYAAGRTDAGVHAVGQVVS 67 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F AL +L D I I + V FHA+F A ++Y Y Sbjct: 68 FSTTSPVPAANFRPALQRFL--PDDIVIRQVEDVQPGFHAQFHARLKTYRYLFHNAPVWS 125 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---- 179 + A LD + M A + +VG DF + + + +RT+ V Sbjct: 126 PFYRQYALWHRTRLDEQAMDFAIRQIVGTFDFRSLETQWPNRKTSVRTVIKASVQRIRNW 185 Query: 180 -----------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 G + + + A FL+ +R+ G+L +G GKW L + + Sbjct: 186 NLLGENGPPSEECQLDPEGEFLCMEITANGFLYNMVRTIAGTLIHIGRGKWGPEKLREIV 245 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 QDR+ G AP GLY V+Y Sbjct: 246 DLQDRRRAGETAPAHGLYLWHVDY 269 >gi|119511153|ref|ZP_01630270.1| tRNA pseudouridine synthase A [Nodularia spumigena CCY9414] gi|119464141|gb|EAW45061.1| tRNA pseudouridine synthase A [Nodularia spumigena CCY9414] Length = 296 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK S+Q IE AI V G + +HGAGRTDSGVHA QVA Sbjct: 13 RVALVIQYVGTHFHGWQRQKQHRSVQEEIETAIATVLGYHLTLHGAGRTDSGVHAAAQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ P LN+YL I I + VD ++HARFSA R Y Y I T + P Sbjct: 73 HFEATGLIPPHRWASILNSYL--PQDILIKASAAVDNRWHARFSAAYRRYRYTIYTEERP 130 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W LD ++ A + L+G+H F + S + + + G Sbjct: 131 NLFVRPFSWHYYYAPLDECLIQAALEPLMGKHHLAAFHRAGSKRSHSWVEVQAAECHRSG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A FL+ +R VG L VG GK T + Q + R+E APP+GL Sbjct: 191 PFLHIEIQANGFLYGMVRLLVGMLAQVGTGKLTLAGFTELWQEERREEVKYAAPPQGLCL 250 Query: 242 DSVEYS 247 V Y Sbjct: 251 LRVGYP 256 >gi|221217465|ref|ZP_03588936.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a] gi|223889178|ref|ZP_03623767.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b] gi|225549711|ref|ZP_03770676.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a] gi|226321158|ref|ZP_03796699.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805] gi|221192743|gb|EEE18959.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a] gi|223885427|gb|EEF56528.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b] gi|225369671|gb|EEG99119.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a] gi|226233450|gb|EEH32190.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805] Length = 246 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 + V Y Sbjct: 240 LERVYYE 246 >gi|48374280|gb|AAT41969.1| putative t-RNA pseudouridine synthase I [Fremyella diplosiphon Fd33] Length = 268 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 86/243 (35%), Positives = 122/243 (50%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+I+Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTD+GVHA QVAHF+ Sbjct: 1 MVIQYLGTHFHGWQRQKQQRTVQEEIETAIAKILGYHVTLHGAGRTDAGVHAAAQVAHFE 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P LN+YL + I I + V ++HARFSA R Y Y I T P Sbjct: 61 ATGLIPPHKWAAVLNSYL--PNDILIRASAGVGNRWHARFSAAYRRYRYTIYTEDQPNLF 118 Query: 126 EKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + +W LD ++ A + L+G+H F + S + + + G LI Sbjct: 119 VRPFSWHYYYAPLDESLIKAALKPLLGKHHLAAFHRAGSKRSHSWVEVQAAECHRSGPLI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG L VG G+ T + + +A+ R+E AP +GL V Sbjct: 179 HIEIQADGFLYGMVRLLVGMLVQVGTGQRTLANFTELWKAERREEVKYAAPAQGLCLLRV 238 Query: 245 EYS 247 Y Sbjct: 239 GYP 241 >gi|160878286|ref|YP_001557254.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160426952|gb|ABX40515.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 264 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 123/255 (48%), Gaps = 11/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 +II Y+G+ Y GWQR SIQG +E+ + V E + + G+GRTD+GVHA Sbjct: 9 RNIKLIISYDGTNYSGWQRIPKAANGDHSIQGLLEEFLSKVLLEPIKLIGSGRTDTGVHA 68 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVA+F I+ + +N L + I IL + VD FH+RF A+ + Y Y I Sbjct: 69 LGQVANFYSRSNLDVNIIRQKMNQVL--PEDIKILQANEVDLNFHSRFDAVEKIYQYIID 126 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T++ + ++ K LD E MR AA+ L+G D+ +F + S IRTI + Sbjct: 127 TKERESVFFRKYSYSCGKDLDIEAMRQAAKLLIGTMDYKSFCTDRKDGKSTIRTISEITI 186 Query: 178 -----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 N I FLH IR G+L VG + + + +A+ + R+ G Sbjct: 187 EELRQNRNQQGIIFTFRGNGFLHHMIRIISGTLLEVGTQERSVESVRQAILGKKREYAGI 246 Query: 233 LAPPEGLYFDSVEYS 247 P+GL+ V Y Sbjct: 247 TLYPQGLFLKQVIYD 261 >gi|300867109|ref|ZP_07111775.1| tRNA pseudouridine synthase A [Oscillatoria sp. PCC 6506] gi|300334864|emb|CBN56941.1| tRNA pseudouridine synthase A [Oscillatoria sp. PCC 6506] Length = 265 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 109/248 (43%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++I+Y G+ GWQRQ + ++Q IE I V V +HGAGRTDSGVHA Q Sbjct: 1 MQRIALVIQYIGTDLHGWQRQPHQRTVQEEIETTISTVLQRPVTLHGAGRTDSGVHAAAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN+ L I I + V+ +HARFSA R Y Y + T Sbjct: 61 VAHFDAEGPVPAHRWQDILNSRL--PKDILIRASAKVEPTWHARFSATWRRYRYTLYTDP 118 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + AW LD ++ A L+GR F + + Sbjct: 119 VPNLFVRPFAWHYYHAPLDESLIQAALTPLIGRFHLAAFHRAGSSRPHSWVDVQVAECQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG I I V A FL+ +R VG L VG G+ + + + + R+ AP GL Sbjct: 179 FGPFIHIEVQASGFLYGMMRLLVGLLVQVGRGERSLENFKDIWVQERREMVKYSAPAHGL 238 Query: 240 YFDSVEYS 247 V Y Sbjct: 239 CLLRVGYP 246 >gi|313903119|ref|ZP_07836513.1| tRNA pseudouridine synthase A [Thermaerobacter subterraneus DSM 13965] gi|313466621|gb|EFR62141.1| tRNA pseudouridine synthase A [Thermaerobacter subterraneus DSM 13965] Length = 345 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 120/244 (49%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++ Y+G+ + GWQRQ ++Q +E+A+ + G V V AGRTD+GVHA QV H Sbjct: 85 LRAVLAYDGTDFAGWQRQAGRRTVQQVVEEALSRLLGHPVRVTAAGRTDAGVHARAQVIH 144 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R + L AL L ++ + FHAR++A R++Y+Y + Sbjct: 145 WQTARPFPAERLVPALRGLL--PLDVAAVAAGEAPAGFHARYAARRKTYVYHLWRAPVAD 202 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L + W +P +LD M AA+ L GRHDF F++ + RT+ + G L Sbjct: 203 PLHRRWQWHLPLALDVAAMAEAARRLEGRHDFAAFKAAGSPVRNTRRTLYRCRLEEHGPL 262 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + I + A FL R VG+L +G G+W + ++ L R+ GP AP GL Sbjct: 263 LRIVLEADGFLMHMARGIVGTLVEIGRGRWPAGHVDMLLATGRRQLAGPTAPAHGLVLWR 322 Query: 244 VEYS 247 VEY Sbjct: 323 VEYD 326 >gi|257452870|ref|ZP_05618169.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|317059412|ref|ZP_07923897.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|313685088|gb|EFS21923.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] Length = 251 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 128/252 (50%), Gaps = 11/252 (4%) Query: 2 IRYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSG 54 + IEY G+ Y GWQR Q+ +IQG IE+ + + E V V +GRTD+G Sbjct: 4 VNLRFSIEYEGTRYLGWQRLGEKQRE-KTIQGKIEQVLARLFALNPEEVSVIASGRTDAG 62 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA Q+A+ L P + + N YL + I I + V++ FH+RF A + Y Y Sbjct: 63 VHAKEQIANVHLPSGKSPQEIEEYCNQYL--PEDIRIFHAHFVEELFHSRFHAKTKEYHY 120 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I ++ P + W P LD E M+ ++Q+ +G HDF F S+ S IR ID Sbjct: 121 EISLQK-PSVFHRNVTWYCPMQLDIEKMKESSQYFLGEHDFIAFSSLKKTKKSTIRRIDR 179 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ + + R V FL IR VG+L VG+GK T D+ Q++ R++ G LA Sbjct: 180 IEIQETESGLLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKTRQKAGFLA 239 Query: 235 PPEGLYFDSVEY 246 P +GL V Y Sbjct: 240 PAKGLTLYKVYY 251 >gi|229496121|ref|ZP_04389842.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC 35406] gi|229316952|gb|EEN82864.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC 35406] Length = 264 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 125/251 (49%), Gaps = 8/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I ++GS Y GWQRQ NG ++Q IE+A+ L+ + + GAGRTD+GV+A Sbjct: 1 MPRYFLDIAFDGSSYCGWQRQPNGLAVQQVIEEALSLLFRTPISIVGAGRTDAGVNAYSL 60 Query: 61 VAHFDLVREW--VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AH D+ P K+LN L I+I ++ V HARF AI R YLY I Sbjct: 61 PAHVDIPETAKGTPYRWRKSLNGIL--PHNINIRSIRPVQPSAHARFDAISRRYLYFI-- 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + + D E M AAQ+L+G HDFT+F +H + I TI + Sbjct: 117 AEERDPFNRQWVLPVRPFPDIEKMNQAAQYLLGTHDFTSFSRLHTDTHTNICTIQEAFWS 176 Query: 179 S--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + + A FL +R+ VG+L VG D+ + ++AQDR G Sbjct: 177 PSSYPSTWQFSITANRFLRNMVRAIVGTLLEVGASTLAPEDIIEIIRAQDRNRAGASVRG 236 Query: 237 EGLYFDSVEYS 247 E L+ VEY Sbjct: 237 EALFLAHVEYP 247 >gi|312149333|gb|ADQ29404.1| tRNA pseudouridine synthase A [Borrelia burgdorferi N40] Length = 246 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 124/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 + V Y Sbjct: 240 LERVYYE 246 >gi|313905811|ref|ZP_07839169.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] gi|313469325|gb|EFR64669.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] Length = 252 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 122/251 (48%), Gaps = 9/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVHA 57 Y M I Y+G+ +FGW+ Q +IQG +E + + G + V V GAGRTD+GVHA Sbjct: 4 NYKMKISYDGTRFFGWEHQPKQEMTIQGKLETVLSRMVGAPEDQPVTVIGAGRTDAGVHA 63 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 +A+ L + +N YL + IS+ L + +FH+RF A ++Y Y Sbjct: 64 KEMIANVLLDTRMSEEEIQTYMNRYL--PEDISVNELKVCADRFHSRFKAKGKTYCYSFW 121 Query: 118 --TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ ++ K + + MR AA+ +VG DF +F S +R +D Sbjct: 122 YADGGVRPTFDRKYVTVLDKRPNVDRMRKAAEEIVGMRDFKSFCGNSHMKKSTVRLVDSI 181 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G I I + FL +R G+L VG GK T + + ++A+DRK GP AP Sbjct: 182 EFKIRGPYIRIYIHGSGFLQNMVRIIAGTLLEVGYGKRTPESIAELIEARDRKLAGPTAP 241 Query: 236 PEGLYFDSVEY 246 +GL V+Y Sbjct: 242 AQGLCLIKVDY 252 >gi|313897268|ref|ZP_07830812.1| tRNA pseudouridine synthase A [Clostridium sp. HGF2] gi|312957989|gb|EFR39613.1| tRNA pseudouridine synthase A [Clostridium sp. HGF2] Length = 252 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQRQ N SIQ IE A+ + G + + +GRTD+ VHAL Q Sbjct: 1 MPRYKVTLSYDGTAYGGWQRQTNTHSIQQEIEAAMEKIEGNFIRITASGRTDAHVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ++ P +ALN+ L I I ++ +V+ FHARF A+ + Y Y I T Sbjct: 61 VFHFDSAKDLAPENWRRALNSLL--PHDIRIQDVCLVEDDFHARFHAVSKRYDYLITTD- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFDVNS 179 K LD + M A+ +G HDFT+F S S ++TI D+ Sbjct: 118 VNNPFYYHYMGKDRKVLDVKRMSECARVFLGTHDFTSFTSSKLDPRKSKVKTITRLDIVQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FL +R +L G + D+++ L QD+ C A EGL Sbjct: 178 EEHAVRLVFEGNGFLRYMVRMIAQTLIEAGKHRLDVADVKQMLYGQDKHLCRYKAQAEGL 237 Query: 240 YFDSVEY 246 Y V Y Sbjct: 238 YLVHVTY 244 >gi|311745793|ref|ZP_07719578.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] gi|126575993|gb|EAZ80271.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] Length = 252 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y G+ Y GWQ Q N S+Q IE A+ + V G+GRTD+GVHA QV Sbjct: 6 RYFLELSYKGTKYHGWQIQNNAFSVQECIESALSTYFRSPITVMGSGRTDTGVHAKMQVC 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFDL + KA+N L ISI+++ V HARF A+ RSY+YRII ++ P Sbjct: 66 HFDLADDIDYGKFLKAINGIL--PIDISIMSIRQVTPNAHARFDAVSRSYVYRIIFQKNP 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 G AW D E M +AA+ L+ DF F +H + I Sbjct: 124 --FLDGLAWHSYFIPDLEKMNLAAETLLKHDDFECFSKVHTEVKHFRCDIKSCSWEQKDG 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + A FL +R+ VG+L VG GK D+EK + ++DR G AP GL+ Sbjct: 182 ELLFHITANRFLRGMVRAIVGTLMEVGLGKKAPEDMEKIILSKDRSNAGKSAPARGLFLS 241 Query: 243 SVEYS 247 + Y Sbjct: 242 RIIYP 246 >gi|270294324|ref|ZP_06200526.1| tRNA pseudouridine synthase A [Bacteroides sp. D20] gi|270275791|gb|EFA21651.1| tRNA pseudouridine synthase A [Bacteroides sp. D20] Length = 250 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 118/248 (47%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSDSPLDTVFMTDKLNRLL--PPDISVYRLRAVKPDAHARFDATARMYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + ++ D E M AAQ L DFT+F +H + I H Sbjct: 119 SP--FNRQYRCRLFQTPDFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCKIMHAAWTRV 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL +R+ VG+L VG GK + + ++ +DR + G P L Sbjct: 177 DDVTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVEGFRRVIEQKDRCQAGTSVPGNAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVAYP 244 >gi|332712143|ref|ZP_08432071.1| pseudouridylate synthase I [Lyngbya majuscula 3L] gi|332348949|gb|EGJ28561.1| pseudouridylate synthase I [Lyngbya majuscula 3L] Length = 277 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 114/247 (46%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ ++GWQRQ S+Q IE + V + ++GAGRTD+GVHA QV Sbjct: 10 QRIALVIQYLGNNFYGWQRQPQHRSVQSEIETVLSSVQQRAITLYGAGRTDTGVHAAAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ LN+ L + I + ++V + +HARFSAI R Y Y I T Sbjct: 70 AHFNATGPIPAHRWAAILNSRL--PEDILVRASALVSQDWHARFSAIWRRYRYTIYTDAC 127 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + LD ++ A + L+G+H F + S + + Sbjct: 128 PNLFVQPFCWHYYQAPLDESLIQAALKPLLGKHHLAAFHRSNSGRSHSWVNVQAAECYRN 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A FL+ +R VG L VG GK T Q R + +P +GL Sbjct: 188 GPFIHIEIQANGFLYGMVRLLVGMLVQVGIGKLTPEQFTDIWVNQQRDKVKHASPAKGLC 247 Query: 241 FDSVEYS 247 V Y Sbjct: 248 LLRVGYP 254 >gi|160903290|ref|YP_001568871.1| tRNA pseudouridine synthase A [Petrotoga mobilis SJ95] gi|189030138|sp|A9BGW7|TRUA_PETMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160360934|gb|ABX32548.1| tRNA pseudouridine synthase A [Petrotoga mobilis SJ95] Length = 245 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 5/243 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+GS ++G+Q Q ++Q EKA+ ++ + + + GRTD+GVHA+ Q Sbjct: 1 MKWVAATVMYDGSNFYGYQSQPTFRTVQDEFEKALKVIFKKEIPSYACGRTDTGVHAVGQ 60 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V F + + ALNA L + + + + V + F+ R A +R Y Y I Sbjct: 61 VISFKVENENMTEKNIKDALNAIL--PEDVYVKEVKEVKEGFNPRAEAKKRIYHYFIYIS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + R W IP +L+ E MR AA++ G HDFT+F +PIRTI + Sbjct: 119 EDPNIFLRDRVWWIPFALNLEKMRQAAKYFEGEHDFTSF-KTGNDERNPIRTIYRVRIIE 177 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +LI IRV +SFL +R+ VGSL VG W +++ L+A+ R AP +G Sbjct: 178 LRKDLILIRVEGKSFLKRMVRNIVGSLVKVGTDVWEVEKIQEILEAKKRALAPASAPAQG 237 Query: 239 LYF 241 LYF Sbjct: 238 LYF 240 >gi|160891004|ref|ZP_02072007.1| hypothetical protein BACUNI_03451 [Bacteroides uniformis ATCC 8492] gi|317480950|ref|ZP_07940030.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_1_36] gi|156859225|gb|EDO52656.1| hypothetical protein BACUNI_03451 [Bacteroides uniformis ATCC 8492] gi|316902843|gb|EFV24717.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_1_36] Length = 250 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 117/248 (47%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSDSPLDTVFMTDKLNRLL--PPDISVYRLRAVKPDAHARFDATARMYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + ++ D E M AAQ L DFT+F +H + I H Sbjct: 119 MP--FNRQYRCRLFQTPDFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCKIMHAAWTRV 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL +R+ VG+L VG GK + + ++ +DR + G P L Sbjct: 177 DDVTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVESFRRVIEQKDRCQAGTSVPGNAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVAYP 244 >gi|332886051|gb|EGK06295.1| tRNA pseudouridine synthase A [Dysgonomonas mossii DSM 22836] Length = 250 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG S+Q +IEKA+ + + + GAGRTD+GVHA Sbjct: 1 MRRYFIYLAYNGENYCGWQIQPNGVSVQEAIEKALTTLLRTPIAIVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD +L K LN+ L ISI N+ V HARF A R Y Y I T Sbjct: 61 AAHFDYEAANLDLPLLAKKLNSIL--PKDISIYNIVEVKPDAHARFDATSRLYRYYITTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + +LD + M A L DFT+F +H + TI Sbjct: 119 K--DPFLYHLKYKVHGNLDIDKMNACADILFEYEDFTSFSKLHTDVKTNNCTILAAQWEK 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + A FL +RS VG+L G GK S ++ + ++A++R E G P L Sbjct: 177 KGNDYIFTIKANRFLRNMVRSIVGTLLEAGKGKIDSGEMRRIIEAKNRGEAGISVPGHAL 236 Query: 240 YFDSVEYS 247 + + +EY+ Sbjct: 237 FLEEIEYN 244 >gi|332877177|ref|ZP_08444927.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684920|gb|EGJ57767.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 268 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 81/254 (31%), Positives = 114/254 (44%), Gaps = 11/254 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q ++KA+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFLYLAYDGTNYHGWQIQPNGISVQEVLQKALATLLRQPVSITGAGRTDTGVHARMM 60 Query: 61 VAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R L LN L ISI V HARF A+ R+Y Y Sbjct: 61 VAHFDFEYADDPVRRIDGRWLTDKLNRLL--PPDISIYKTVPVAADAHARFDALSRTYHY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + ++P + + + + LD E M AA L DFT+F ++ + I Sbjct: 119 YLHFGKSP--FLRAYSCRLYRMLDFEKMNEAAAALFDYTDFTSFSKVNTDTKTNNCRIMQ 176 Query: 175 FDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + A FL +R+ VG+L VG GK T ++ +DR G Sbjct: 177 ARWTELAPGEWRFEIQADRFLRNMVRAIVGTLVEVGRGKLTPEGFRAVIEGKDRCRAGES 236 Query: 234 APPEGLYFDSVEYS 247 P L+ V Y Sbjct: 237 MPGNALFLVDVAYP 250 >gi|282879881|ref|ZP_06288608.1| tRNA pseudouridine synthase A [Prevotella timonensis CRIS 5C-B1] gi|281306275|gb|EFA98308.1| tRNA pseudouridine synthase A [Prevotella timonensis CRIS 5C-B1] Length = 243 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ+Q N S+Q ++KA+ + E +VV GAGRTD+GVHA + Sbjct: 1 MQRYFIYFSYDGTSYHGWQQQPNSHSVQAELQKALSTILREPIVVVGAGRTDTGVHARKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ L LN L IS+ + V HARFSA R+Y Y + + + Sbjct: 61 VAHFDIEAVIDGEQLAYKLNRLL--PRDISVAGVKPVQADMHARFSAKWRTYHYYVHSHK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + +P LD M AA HL+ DF F H + + + + Sbjct: 119 NP--FLRHYSCQLPFQLDYPLMNQAANHLLSVTDFGAFCKTHTDVKTTLCEVVRAEWVQT 176 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + A FL +R+ VG+L VG + T + +++ +R G P L Sbjct: 177 GEDSWYFVIKANRFLRNMVRAVVGTLIEVGRHRMTLEQFDAVIRSGNRSNAGESMPAHAL 236 Query: 240 YFDSVEY 246 + + +EY Sbjct: 237 FLEEIEY 243 >gi|158334430|ref|YP_001515602.1| tRNA pseudouridine synthase A [Acaryochloris marina MBIC11017] gi|158304671|gb|ABW26288.1| tRNA pseudouridine synthase A [Acaryochloris marina MBIC11017] Length = 292 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 111/255 (43%), Gaps = 11/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ S+Q IE + + V +HGAGRTDSGVHA QV Sbjct: 9 QRVALVIQYLGTHFHGWQRQPQHRSVQADIEDTLAEIVQHPVTLHGAGRTDSGVHAAAQV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ LNA L I I ++V +HARFSA R Y Y + T Sbjct: 69 AHFDVESPIPAHRWASVLNARL--PQDILIRGSALVPSDWHARFSATWRRYRYTLYTDPC 126 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + +W LD + M+ A L+GRH F + Sbjct: 127 PNLFLRPYSWHYYYQPLDVQRMQAALDPLIGRHHLAAFHRAGSSRPHSWVDVHEATCVQR 186 Query: 181 G--------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 LI+I V A FL+ +R VG L VG G + + QA+ R + Sbjct: 187 PTVEAKDSSPLIQIEVQASGFLYGMMRLLVGLLVQVGRGLRSPDSFTELWQAERRDQVKY 246 Query: 233 LAPPEGLYFDSVEYS 247 AP +GL V Y Sbjct: 247 SAPAKGLCLLRVGYP 261 >gi|325279339|ref|YP_004251881.1| tRNA pseudouridine synthase A [Odoribacter splanchnicus DSM 20712] gi|324311148|gb|ADY31701.1| tRNA pseudouridine synthase A [Odoribacter splanchnicus DSM 20712] Length = 245 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 119/248 (47%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY + + YNGS Y GWQ Q SS+Q I +A+ + + + V GAGRTD+GVHA Sbjct: 1 MVRYFIELAYNGSRYHGWQIQPGASSVQEEINRALSTLLRQDIYVVGAGRTDTGVHASFF 60 Query: 61 VAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD+ E P + LN L I+I + V HARFSAI R+Y Y I Sbjct: 61 VAHFDIECELPEPQQVVYKLNGLL--DKDIAIYKIYRVPMDKHARFSAISRTYKYYI--D 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AW D + M A + L DFT+F +H + I Sbjct: 117 KTKDPFTYPFAWKAYPLPDIQTMNEACRVLFDYTDFTSFSKLHTDVKTNNCIIYEAQWEE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + V A FL +R+ VG+L VG GK T D+ K +++++R G P + L Sbjct: 177 TDKQLIFTVKANRFLRNMVRAIVGTLIDVGRGKLTPEDVRKIIESKNRCNAGTSVPAQAL 236 Query: 240 YFDSVEYS 247 + +EY Sbjct: 237 FLCHIEYP 244 >gi|193214164|ref|YP_001995363.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC 35110] gi|193087641|gb|ACF12916.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC 35110] Length = 265 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 122/248 (49%), Gaps = 7/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M++EY+G+ + GWQRQ + +IQG IE + V E V + AGRTD+GVHA Sbjct: 19 RNLKMLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRVLQEPVELIAAGRTDAGVHAK 78 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA+F L ALN L I I+ + + F+ARF A R+Y Y ++T Sbjct: 79 AQVANFLTENSLSISRLKHALNGLL--PSQIKIIEIEDAPENFNARFDAKSRTYRYFLLT 136 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R AL + D M Q ++G+HDFT+F Q + I TI+ Sbjct: 137 RY--SALLSRFTGIYRYDFDARAMNACCQEILGQHDFTSFSKAGSQTKTRICTIEKARWY 194 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + + A FLH+ +R VG++ VG+G+ + D + A+D A P+G Sbjct: 195 QRKNGLMLEIRANRFLHSMVRLLVGTMIKVGNGELSVQDFDAIFSAKDVCLAATSAQPQG 254 Query: 239 LYFDSVEY 246 L+ VEY Sbjct: 255 LFLWHVEY 262 >gi|228473082|ref|ZP_04057839.1| tRNA pseudouridine synthase A [Capnocytophaga gingivalis ATCC 33624] gi|228275664|gb|EEK14441.1| tRNA pseudouridine synthase A [Capnocytophaga gingivalis ATCC 33624] Length = 240 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 125/245 (51%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQRQ + S+Q +E+A+ ++ + + + GAGRTD+GVHA Sbjct: 1 MRYFIQLSYNGKNYCGWQRQPHSPSVQEELEEAMSMLLKKEIALVGAGRTDTGVHARDYY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P L + LN++L I+I + V HARF A R+Y Y I + Sbjct: 61 AHFDSDSSL-PDRLVEKLNSFL--PKEIAIKQIFPVKNDAHARFDACSRTYQYFIALEKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ ++ I LD M A + L+ DF F ++ + + G Sbjct: 118 PFLYEQ--SYYIHFPLDLSLMNKAGEILLQHTDFQCFSKVNTDVKTYNCQLKEAYWRKEG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 NL+ R+ A FL +R+ VG++ +G G+ + DL++ L ++DR + G P L+ Sbjct: 176 NLLIFRITADRFLRNMVRAIVGTMIEIGRGRLSLEDLQQILLSKDRSKAGYSVPGHALFL 235 Query: 242 DSVEY 246 + + Y Sbjct: 236 EEIIY 240 >gi|126697063|ref|YP_001091949.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9301] gi|166228747|sp|A3PF23|TRUA_PROM0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126544106|gb|ABO18348.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9301] Length = 268 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQ+QKN +++Q +++A+ +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGSHYSGWQKQKNATTVQEILDRALLKITNHTVQTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D+ LN+ L +I IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHCDVDCVVPGNSYSDVLNSLL--PSSIRILESIEVKDSWHACYSALYRHYRYVINNSK 118 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD M A++ ++G HDF F+ ++ I I + D+ Sbjct: 119 FPNLFIDNWSWHRYQKVLDEVLMLNASRQMIGEHDFFAFQKTGSNRTNSITKIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R +G L LVG+ K + + + + AP +GL Sbjct: 179 VEDLIFVDIKATGFLYGMVRLIIGQLVLVGENKISPEIFTDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEYS 247 F + Y Sbjct: 239 CFVNAVYE 246 >gi|219849858|ref|YP_002464291.1| tRNA pseudouridine synthase ACD [Chloroflexus aggregans DSM 9485] gi|254789611|sp|B8G6P6|TRUA_CHLAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219544117|gb|ACL25855.1| tRNA pseudouridine synthase A [Chloroflexus aggregans DSM 9485] Length = 278 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++ Y+G+ + G Q Q + ++QG+IE A +T E + AGRTD+GVHA Q Sbjct: 1 MRTIALLLAYDGTDFAGSQWQTDIRTVQGAIEAAWEALTQEQRRIVLAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH + + LNA+L +++ N+ + FHAR+SAI R Y Y I Sbjct: 61 VAHVQTATRHSLATIWRGLNAHL--PTDVTVQNVGEAVRDFHARYSAIEREYRYLIDCAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 PL + +A +LD M A + L G HDF F + S +RT+ + Sbjct: 119 VPLPQLRHQALHYAGTLDVTAMATALKLLEGTHDFAAFTTATPSQRSTVRTMYWTRIVER 178 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L+ I + A +FL +R VG+L LVG G+ T + L +DR+ GP AP Sbjct: 179 VWFDRRLLAIELAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLAGRDRRLAGPTAPA 238 Query: 237 EGLYFDSVEYS 247 GL +V Y Sbjct: 239 HGLTLTAVRYP 249 >gi|332664422|ref|YP_004447210.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] gi|332333236|gb|AEE50337.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] Length = 256 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M ++ + +EY+GS + GWQ Q++ SIQG + KA +V + V V+G+GRTD+GVHAL Sbjct: 1 MAKFKLTLEYDGSRFKGWQVQEDARSIQGQLIKAAKIVFETDKVEVYGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH + + ++ + LN L I++L++ V +FHAR A+ RSY+Y+I R Sbjct: 61 QVAHLAVDTKMPVKMIRQKLNDQLT--HDINVLSVDPVSDKFHARHDAVARSYVYQISRR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A K W + LD E M +AA HL+G HDF +F + S + H V Sbjct: 119 --RNAFGKHFMWWVKDPLDVERMNVAAAHLIGMHDFKSFSNEKGTEKSSKVELQHLKVVE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + ++A FL +R VGSL VG G+ ++ L+ ++ APP GL Sbjct: 177 KGDKVVVHIIASHFLWKMVRRVVGSLVEVGAGRLDPDKFKEWLEKPSQEPAKFTAPPAGL 236 Query: 240 YFDSVEYS 247 + + V + Sbjct: 237 FLERVYFP 244 >gi|254495151|ref|ZP_05108075.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] gi|85819501|gb|EAQ40658.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] Length = 241 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 122/246 (49%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q + S+Q + A+ + + + V GAGRTD+GVHA + Sbjct: 1 MRYFIELSYNGKNYHGWQIQPDVISVQEKLNSALSTIFQQDIQVVGAGRTDTGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ + LN+ L I + + +VD + HARF A+ RSY Y+I + Sbjct: 61 AHFDVDKNLKGD-FAFKLNSIL--PKDIVVYKVFLVDDEKHARFDAVSRSYEYKIWLGRN 117 Query: 122 PLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L+ +W I + D + M AA+ L DF TF + + + + Sbjct: 118 PFLLD--FSWQIHSQKPDLKLMNEAAKLLTEYTDFQTFSKVKTEVYTFNCDVTEAFWEQK 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + A FL +R+ VG+L VG GK + D +++++R G P +GL+ Sbjct: 176 GEELTFHISANRFLRNMVRAIVGTLLDVGFGKISIDDFRNIIESKNRGNAGLSVPAKGLF 235 Query: 241 FDSVEY 246 ++Y Sbjct: 236 LTQIKY 241 >gi|281355314|ref|ZP_06241808.1| tRNA pseudouridine synthase A [Victivallis vadensis ATCC BAA-548] gi|281318194|gb|EFB02214.1| tRNA pseudouridine synthase A [Victivallis vadensis ATCC BAA-548] Length = 272 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 6/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQV 61 RY + I Y+G+ Y GWQ Q + ++Q +++ + + G+ + + G+ RTD+GVHA R Sbjct: 13 RYLLEIAYDGTNYSGWQIQPHRVAVQQRVQEILTKMYNGQPIHLIGSSRTDAGVHAQRFA 72 Query: 62 AHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A + + +A+N L I + + V +FHAR+ A+ ++Y Y + Sbjct: 73 ASYLTPVRPDIPTDKILRAVNRQL--PGDIKLRTVREVPLEFHARYDALGKAYTYVLNLG 130 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P W +D E +R A+Q L G HD+++F +RTI DV Sbjct: 131 D-PSPFTDRYTWRPIHRMDVEKIRAASQVLTGTHDYSSFVVERSLIDEAVRTIYRIDVQE 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG + V FL+ IR +G+L+ G GK + + + L+A DR APP GL Sbjct: 190 FGQFCCVTFVGNGFLYKMIRCLMGTLEAAGAGKLSPEAVRRILEACDRTVAPETAPPNGL 249 Query: 240 YFDSVEY 246 + V Y Sbjct: 250 FLMKVFY 256 >gi|225549204|ref|ZP_03770177.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 94a] gi|225370062|gb|EEG99502.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 94a] gi|312148421|gb|ADQ31080.1| tRNA pseudouridine synthase A [Borrelia burgdorferi JD1] Length = 246 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L + FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAIL-LKNSIKILKLRYIKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 + V Y Sbjct: 240 LERVYYE 246 >gi|206901950|ref|YP_002250733.1| tRNA pseudouridine synthase A [Dictyoglomus thermophilum H-6-12] gi|238057728|sp|B5YDX5|TRUA_DICT6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206741053|gb|ACI20111.1| tRNA pseudouridine synthase A [Dictyoglomus thermophilum H-6-12] Length = 245 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI + + + Y G ++G+Q+Q ++QG +EK + L+ E + V GAGRTD+GVHAL Q Sbjct: 1 MINWKVELSYIGKDFWGFQKQPGKRTVQGELEKVLKLLFDEDIKVIGAGRTDAGVHALGQ 60 Query: 61 VAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F + + L K LN L I I + IVD FHAR+SA RR Y+Y I Sbjct: 61 VVNFKTKESKNFSCDKLYKVLNKLL--PGDIKIKKVEIVDDNFHARYSAKRRWYIYVIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + W I K LD + + ++A G HDF F I + I Sbjct: 119 NEEKNLFLRDYCWWINKPLDKDLLNLSANLFKGIHDFRNFCVIE-NYDNTNVEIYESFWY 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ V A FL +R VGS+ VG K DLEK L+ + + AP G Sbjct: 178 FKEDLLIYFVSAPFFLRKMVRFIVGSMVEVGLKKKELEDLEKYLKDRKEERFSSPAPASG 237 Query: 239 LYFDSVEY 246 LY ++Y Sbjct: 238 LYLFKIDY 245 >gi|86156809|ref|YP_463594.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] gi|85773320|gb|ABC80157.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] Length = 264 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 124/244 (50%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA QVA Sbjct: 23 VKLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQVAS 82 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F R +NA L +++ S+ F AR SA + Y Y I Sbjct: 83 FREDRPLPVKAYVMGMNAVL--PPDVAVRAASLEPDGFDARRSARGKRYRYVIENLPTRA 140 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGN 182 L + +AW L+ N+R AA HLVGRHDF F++ C +R + +V G Sbjct: 141 PLTRLQAWQHFHPLELANVREAAAHLVGRHDFAAFQAADCACEHAVREVRRLEVLGEAGG 200 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 IE+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL+ + Sbjct: 201 RIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLALLARGDRTEAGPTAPPQGLFLE 260 Query: 243 SVEY 246 V Y Sbjct: 261 EVFY 264 >gi|121611771|ref|YP_999578.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2] gi|166229848|sp|A1WSF3|TRUA_VEREI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121556411|gb|ABM60560.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2] Length = 272 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 14/257 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I YNG Y GWQ Q + ++Q ++E A+ V AGRTD+GVH L QV Sbjct: 1 MRMALGISYNGQAYCGWQSQPSVRTVQDALEAALGRFATHPVSTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + N +L I++ V FHAR SA+ R Y Y ++ Sbjct: 61 VHFDTPLDRPAASWVRGTNGFL--PADIAVQWAQAVPDSFHARASALARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + LD + M+ AA +LVG HDF+ FR+ CQA SP++T+ ++ G Sbjct: 119 RPSVESGRVGWVCHRLDHDAMQQAADYLVGEHDFSAFRASTCQAPSPVKTLRRIGISCRG 178 Query: 182 N------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 VA +FLH IR+ +G L +G GK + +++ L+A+ R Sbjct: 179 QSPPHPALGWSPCYWRFEFVANAFLHHMIRNIMGCLVAIGQGKQSPQWMQQLLRARSRAA 238 Query: 230 CGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 AAPTFAPDGLYFLGPVY 255 >gi|297623065|ref|YP_003704499.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093] gi|297164245|gb|ADI13956.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093] Length = 260 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 89/254 (35%), Positives = 132/254 (51%), Gaps = 11/254 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + +E++G+ +FGWQ Q ++QG +E A+ + G H AGRTD+GVH Sbjct: 1 MRRIKLTLEFDGTDFFGWQVQAGAAHPVRTVQGVLEAALATLPGARPKAHAAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR- 115 AL VAH+D + ALNA L + +L+ V + F A+FS R YLYR Sbjct: 61 ALAMVAHYDTDDRIPVAKVPAALNARL--PPDVRVLHAEEVPRSFEAQFSCCYRRYLYRM 118 Query: 116 --IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 + +A ALE+ R +P +LD E M+ AA G DF + ++ + +RT+ Sbjct: 119 RLLRASRAGSALERRRVLFVPGALDLEAMQRAAPRFEGTRDFAALATQ--ESRTTVRTVY 176 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + G + + + A FL +R+ VG+L VG+GK D+ L A+DR+ GP Sbjct: 177 RCRLGAAGPDLTLDIAADGFLRNMVRAVVGTLLWVGEGKLAPEDVSALLAARDRRRAGPN 236 Query: 234 APPEGLYFDSVEYS 247 APP GLYF Y Sbjct: 237 APPHGLYFAEAGYE 250 >gi|288924968|ref|ZP_06418904.1| tRNA pseudouridine synthase A [Prevotella buccae D17] gi|288338158|gb|EFC76508.1| tRNA pseudouridine synthase A [Prevotella buccae D17] Length = 261 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 123/258 (47%), Gaps = 15/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q +EKA+ L+ + GAGRTD+GVHA Sbjct: 1 MQRYFIYLNYDGTNYHGWQIQPNGNSVQEELEKALSLLLRTKTEIVGAGRTDAGVHARLM 60 Query: 61 VAHFDLV----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 VAHFD ++ LC LN L ISI + V + HARFSA+ R Sbjct: 61 VAHFDYEVGTTTEGQAAKDIDCPQLCYKLNRLL--PRDISIRKIIPVAQDMHARFSAVAR 118 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +Y Y I T + P E+ ++ +P +LD + MR + L + DF F S Sbjct: 119 TYHYYIHTGKMP--FERHYSYQMPYALDFDAMREGCELLKRQTDFAAFCKAGADNKSTCC 176 Query: 171 TIDHF-DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ V + + A FL +R+ VG+L +G K T ++A R + Sbjct: 177 TVTEARWVKTSPGTWYFEITANRFLRNMVRAVVGTLVDLGRHKITLEQFRHIVEAGRRSD 236 Query: 230 CGPLAPPEGLYFDSVEYS 247 G P L+ + VEY Sbjct: 237 AGESMPGHALFLERVEYP 254 >gi|298376183|ref|ZP_06986139.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_19] gi|298267220|gb|EFI08877.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_19] Length = 265 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ V + GAGRTD+GVHA + Sbjct: 15 RRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLMI 74 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD V L + LN L I++ + V + HARF A R+Y Y + T++ Sbjct: 75 AHFDWEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTKK 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +P LD E M A + L DFT+F +H + I H Sbjct: 133 --DPFNHELVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQE 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L+ Sbjct: 191 GDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALF 250 Query: 241 FDSVEYS 247 V Y Sbjct: 251 LVDVTYP 257 >gi|293402539|ref|ZP_06646674.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304053|gb|EFE45307.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 251 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++ Y+GS Y GWQ+Q N +SIQ IE+A+ + V + +GRTD+GVHA+ Q Sbjct: 1 MARYKAVVSYDGSSYGGWQKQLNTTSIQEVIEQALAKMHKHDVAIVASGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + KALN+ L I I ++ V + FHARF AI + Y Y I Sbjct: 61 VFHFDSEMKIQEKHWIKALNSLL--PKDIRIQSVKQVTEAFHARFDAIGKRYDYLISND- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS 179 ++ LD M+ A L+G HDFT+F S P ++TI +V Sbjct: 118 ILNPFKENYMAKDAHKLDVAYMQECATVLIGTHDFTSFTSNKIDPRKPRVKTITRLEVLQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FL +R +L G + T D++K L+A+D+ C A P+GL Sbjct: 178 EKDHVHMIFEGNGFLRYMVRMLSQTLIEAGKHRITKADIKKMLEAKDKHACRYKAVPQGL 237 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 238 YLVRVDY 244 >gi|120434790|ref|YP_860476.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] gi|117576940|emb|CAL65409.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] Length = 259 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y G Y GWQ Q N S+Q IEK + V + + GAGRTD+GVHA + A Sbjct: 13 RYFIELSYFGKAYHGWQIQPNSISVQEVIEKNLSKVLRSTIEIVGAGRTDAGVHAKQMFA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ R +L LN+ L I+I ++ V+K HARF A RSY Y +I + Sbjct: 73 HFDVDRVLDLELLKYKLNSML--PKDIAISDIFPVNKNVHARFDATSRSYEYHLIQEK-- 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + AW + + E M +AA L G +F F + ID + GN Sbjct: 129 DPFNRESAWFLKHEVKIEKMNMAAATLRGYTNFKCFSKSKTDVRTYNCRIDEAEWRMEGN 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ + A FL +R+ VG+L +G K + + + ++++DR + G P GLY Sbjct: 189 LMVFHITADRFLRNMVRAVVGTLIEIGQNKHPVSYMHEVIKSEDRGKAGASVPAHGLYLT 248 Query: 243 SVEYS 247 ++Y Sbjct: 249 RIKYP 253 >gi|219685340|ref|ZP_03540159.1| tRNA pseudouridine synthase A [Borrelia garinii Far04] gi|219673113|gb|EED30133.1| tRNA pseudouridine synthase A [Borrelia garinii Far04] Length = 246 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q Sbjct: 1 MKKILAEIAYEGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALN+ L + ++I IL L V FH RF+A +R Y YRI+ Sbjct: 61 IITFDININIQLNNLKKALNSIL-LKNSIKILKLKYVKNSFHPRFNAQKRKYSYRILNSN 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESVSTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 D V Y Sbjct: 240 LDKVYYE 246 >gi|307565293|ref|ZP_07627786.1| tRNA pseudouridine synthase A [Prevotella amnii CRIS 21A-A] gi|307345962|gb|EFN91306.1| tRNA pseudouridine synthase A [Prevotella amnii CRIS 21A-A] Length = 257 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 125/259 (48%), Gaps = 17/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q ++EKA+ ++ + + + GAGRTD+GVHA Sbjct: 3 MQRYFITLSYDGNNYHGWQIQPNGSSVQETLEKALTILLRQPISIIGAGRTDTGVHARMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ ++ + + LN L IS+ ++ V HARFSAI+R+Y Y + ++ Sbjct: 63 VAHFDMKSKFDNMQISYRLNRLL--PHDISVSSIIPVSNDMHARFSAIKRTYHYYLHLQK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + +L+ + M AA +L+G+ DF F + I I Sbjct: 121 --DIYNRQYSCYVGYNLNFDLMNEAALYLIGKKDFKCFCKTGADVKTTICNITEAYWKPI 178 Query: 181 GNL-------------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + A FL +R+ VG+L VG GK + T + + R Sbjct: 179 YPELSTLSSTDIKPTNWCFIISANRFLRNMVRAIVGTLIAVGRGKMSITKFKTIVDTGSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 + G P L+ +EY Sbjct: 239 SDAGESMPGNALFLWDIEY 257 >gi|119952818|ref|YP_945027.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135] gi|254789604|sp|A1QYG5|TRUA_BORT9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119861589|gb|AAX17357.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135] Length = 245 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 122/247 (49%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y+G+Q Q +IQG IEK + ++ + +H AGRTD GVHA Q Sbjct: 1 MKKVLAKITYDGSLYYGFQIQPKKPTIQGEIEKVLEKISKTKIKIHSAGRTDKGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + F + L A+N+ LK D I I+ L V+ +F RF A RR Y Y I+ + Sbjct: 61 IISFYIKINIKLKNLKTAINSLLK--DDIRIIKLKYVEDKFQPRFDAKRRKYSYYILNNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E RA+ + K L+ + A+ L+G HDFTTF I Q +S ++ I + Sbjct: 119 NHYPWEGYRAYYVKKKLNINRLNEMAEMLIGIHDFTTFSCIRDQTNSKLKEIYYARFKKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I ++ SFL +RS VG + + +K L +++RK AP + L+ Sbjct: 179 NKFIIFEIIGSSFLWKMVRSIVGVMIDIEIKNEPVDTFKKILNSKNRKLTRKTAPAKALF 238 Query: 241 FDSVEYS 247 D V Y Sbjct: 239 LDKVFYE 245 >gi|153007028|ref|YP_001381353.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. Fw109-5] gi|152030601|gb|ABS28369.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. Fw109-5] Length = 245 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q NG SIQ +E+A+ + E V AGRTD+GVHA Q Sbjct: 1 MPVVKLVLEYDGTRYVGWQVQPNGPSIQAEVERALATLHKEPRRVTAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F R K +NA L D +++ S+ F AR SA + Y Y + + Sbjct: 61 VVSFPEARPLPLAAYVKGMNALL--PDEVAVRAASVEPDGFDARRSARGKRYRYVLENLE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 L + +AW + +LD MR A++HL+GR DF F++ C +R + DV Sbjct: 119 TRAPLSRLQAWQLFGALDVGAMREASRHLLGRQDFAAFQAADCACDHAVREVHRLDVLGE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +E+ V A +F+ +R+FVG+L VG G+ + D+ + ++DR G APP+GL Sbjct: 179 PSGRVELVVEATAFVKHMVRNFVGTLVEVGKGRRRAEDMPALVASRDRTRAGRTAPPQGL 238 Query: 240 YFDSVEY 246 + + V Y Sbjct: 239 FLEEVFY 245 >gi|171058363|ref|YP_001790712.1| tRNA pseudouridine synthase A [Leptothrix cholodnii SP-6] gi|170775808|gb|ACB33947.1| tRNA pseudouridine synthase A [Leptothrix cholodnii SP-6] Length = 262 Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 122/246 (49%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y GS Y GWQ Q NG+++Q +E A+ + V AGRTD+GVHAL QV Sbjct: 1 MRLALGLSYRGSAYRGWQSQTNGATVQDVLEAALCRFAATPIRVSCAGRTDAGVHALNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D R+ P + N YL +++ V FHAR +A R Y Y ++ Sbjct: 61 VHLDTDRDREPFSWVRGTNTYL--PPDVAVQWCRPVPDAFHARNAARARRYAYVLLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+E G+ I + LD M +A L+G HDF+ FRS CQA SP++ + + G Sbjct: 119 RPAMEAGQVGWIFRPLDQARMEASAALLIGEHDFSAFRSADCQALSPVKQMRTIRIGRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH IR+ +G L VG G L L ++DR+ P P+GLYF Sbjct: 179 PYWRFDFEASAFLHHMIRNLMGCLIAVGTGARDPAWLAGVLASRDRRLAAPTFSPDGLYF 238 Query: 242 DSVEYS 247 Y Sbjct: 239 LGPRYD 244 >gi|317502836|ref|ZP_07960938.1| tRNA pseudouridine synthase A [Prevotella salivae DSM 15606] gi|315666051|gb|EFV05616.1| tRNA pseudouridine synthase A [Prevotella salivae DSM 15606] Length = 243 Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG S+Q +++ A+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFIYFCYDGTAYHGWQIQPNGMSVQETLQNALSTILRQRVEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL E L LN L IS+ N+ VD HARFSA R+Y Y I TR+ Sbjct: 61 VAHLDLAEEIECEQLTYKLNRLL--PRDISVFNIQPVDSNMHARFSAKWRTYRYFIHTRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ P LD E M A+ L DF F ++ + TI Sbjct: 119 --DPFLRKYSYESPYLLDFELMEQGAELLKQHQDFAAFCKSGADNTTTLCTIKESKWVKT 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L L+G + T DLE+ L+ +R + G P L Sbjct: 177 SPYSWYFEITANRFLRNMVRATVGTLILLGRHRITIKDLERILEEGNRSQAGESMPGHAL 236 Query: 240 YFDSVEY 246 + +++EY Sbjct: 237 FLENIEY 243 >gi|88801321|ref|ZP_01116849.1| tRNA pseudouridine synthase A [Polaribacter irgensii 23-P] gi|88781979|gb|EAR13156.1| tRNA pseudouridine synthase A [Polaribacter irgensii 23-P] Length = 241 Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQ Q + S+Q + AI V V V GAGRTD+GVHA++ Sbjct: 1 MRYFIELSYNGTKYHGWQIQPDMVSVQEKLNNAISTVLQSKVEVVGAGRTDTGVHAVQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ + LN+ L + IS+ + V + HARF A RSY YRI + Sbjct: 61 AHFNTE-ILIENNFVHKLNSIL--PNDISVDKVLEVLEDKHARFDAKSRSYEYRIWLGRN 117 Query: 122 PLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L+ +W I + D M AA L+ +F TF + + + + Sbjct: 118 PFLLD--FSWQIHSQKPDLSKMNAAAILLLEYENFQTFSKVKTEVHTFNCNVTAAFWRQE 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GNL+ + A FL +R+ VG+L VG GK + + + +++++R G P +GL+ Sbjct: 176 GNLLIFHISANRFLRNMVRAIVGTLVDVGLGKISIAEFRQIIESKNRSNAGLSVPAKGLF 235 Query: 241 FDSVEY 246 ++Y Sbjct: 236 LTQIKY 241 >gi|325675475|ref|ZP_08155159.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707] gi|325553446|gb|EGD23124.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707] Length = 296 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ ++ G IE+ + + V++ AGRTD+GVHA QV Sbjct: 21 VRLRLDISYDGTDFSGWARQPGRRTVCGEIEEKLSAIVRTPVLLTVAGRTDAGVHASGQV 80 Query: 62 AHFDLVREWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + +P + + + + + +S + F ARFSAIRR Y YR+ T Sbjct: 81 AHVDVPADMIPEEPSRLVRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRHYEYRLTTAP 140 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L PK +D + MR A+ L+G HDF F + ++ +R + FD Sbjct: 141 YGAEPLRARDTVAWPKDVDVDAMRKASSRLLGLHDFAAFCKRR-EGATTVRELQRFDWEQ 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + V A +F + +RS VG+ VG+G+ T + L ++R +AP GL Sbjct: 200 SGHELTAFVSADAFCWSMVRSLVGAALAVGEGRRTVEWMAGLLAERERASAVAVAPAHGL 259 Query: 240 YFDSVEYS 247 V+Y Sbjct: 260 SLIRVDYP 267 >gi|86609047|ref|YP_477809.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557589|gb|ABD02546.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-2-3B'a(2-13)] Length = 285 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 119/247 (48%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y GS ++GWQRQ ++QG +E+AI G V ++GAGRTD+GVHA QV Sbjct: 4 RRIALRIQYLGSRFYGWQRQAARRTVQGVLEEAIASRAGHPVTLYGAGRTDTGVHAAGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V + LN L + + +L + V +HARFSA R Y Y I+ R+ Sbjct: 64 AHFDTTSGIPAVEWSRVLNDCL--PEDVVVLASAQVPDSWHARFSARWRRYRYLILNRER 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +W + L E M A L+G H FR + G Sbjct: 122 PDVFWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE--CGPLAPPEGL 239 +LI I V A FL+ +R VGSL++VG G+ + Q D + APP+GL Sbjct: 182 DLISIEVQASGFLYRMMRLLVGSLEVVGRGQLSPAQFVHLWQHNDWSQMRTRYSAPPQGL 241 Query: 240 YFDSVEY 246 V Y Sbjct: 242 CLTDVGY 248 >gi|297159627|gb|ADI09339.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1] Length = 292 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 120/254 (47%), Gaps = 9/254 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVH 56 +R + + Y+G+ + GW +Q+ ++QG +E A+ +V + V + AGRTD+GVH Sbjct: 10 VRVRLNLSYDGTDFSGWAKQRGRDTVRTVQGELESALKVVMRMQDPVELTVAGRTDAGVH 69 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A QVAH DL K L ++ I + ++ F+ARFSAI R Y+YR Sbjct: 70 ARGQVAHVDLPEPIWAEHHEKLLRRLAGRLPHDIRVWSVGEAPPGFNARFSAIWRRYVYR 129 Query: 116 IITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 ++ L +G LD + M AAQ L+G HDF + ++ IRT+ Sbjct: 130 VVDHPGGVDPLLRGHVLWHDWPLDVDAMNEAAQKLLGEHDFAAYCKKR-DGATTIRTLQR 188 Query: 175 FDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + +I V A +F H +RS VG+L VGDG + K L A R + Sbjct: 189 LSWERGPDGIITATVRADAFCHNMVRSLVGALLFVGDGHRPADWPAKVLAAGVRDSAVHV 248 Query: 234 APPEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 VRPHGLTLEQVGYP 262 >gi|223984957|ref|ZP_03635058.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM 12042] gi|223963077|gb|EEF67488.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM 12042] Length = 268 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 131/249 (52%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R+ ++ Y+G Y GWQ Q G++IQ +I+ AI ++ + V + G+GRTD+ VHA Sbjct: 2 MQRFKAVVSYDGFDYAGWQIQPAERGATIQQTIQDAISVICQQPVSITGSGRTDAQVHAW 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD+ +A+N +L I I ++ VD +FHARF AI + Y YRI Sbjct: 62 GQVFHFDVDFSLNAFQWKRAINGHL--PKDIHIRSVEAVDSRFHARFDAIGKRYEYRIQL 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDV 177 +A + A+ P +L+ + MR A +L+G HDF++F + + RTI ++ Sbjct: 120 GEA-NVFTRRYAFQSPWTLNVQAMREGAAYLIGEHDFSSFCANSRAEMPDQARTITRLEL 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL +R G+L VG G+ D++ LQAQD++ C A P+ Sbjct: 179 AEENDQLRLIYEGSGFLRYMVRMMTGTLIEVGRGRLAPQDVQWMLQAQDKQICHFNAKPQ 238 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 239 GLTLVEVYY 247 >gi|257466765|ref|ZP_05631076.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|315917914|ref|ZP_07914154.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|313691789|gb|EFS28624.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] Length = 251 Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 127/252 (50%), Gaps = 11/252 (4%) Query: 2 IRYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSG 54 + IEY G+ Y GWQR Q+ +IQG IE+ + + E V V +GRTD+G Sbjct: 4 VNLRFSIEYEGTRYLGWQRLGEKQRE-KTIQGKIEQVLARLFALNPEEVSVIASGRTDAG 62 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA Q+A+ L P + + N YL + I I + V++ FH+RF A + Y Y Sbjct: 63 VHAKEQIANVHLPSGKSPQEIEEYCNQYL--PEDIRIFHAHFVEELFHSRFHAKTKEYHY 120 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I ++ P + W P LD E M+ ++Q+ +G HDF F S+ S IR ID Sbjct: 121 EISLQK-PSVFHRNVTWYCPIQLDIEKMKESSQYFLGEHDFLAFSSLKKTKKSTIRRIDR 179 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ + R V FL IR VG+L VG+GK T D+ Q++ R++ G LA Sbjct: 180 IEIQETEFGLLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKARQKAGFLA 239 Query: 235 PPEGLYFDSVEY 246 P +GL V Y Sbjct: 240 PAKGLTLYKVYY 251 >gi|255556594|ref|XP_002519331.1| pseudouridylate synthase, putative [Ricinus communis] gi|223541646|gb|EEF43195.1| pseudouridylate synthase, putative [Ricinus communis] Length = 344 Score = 257 bits (658), Expect = 9e-67, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 132/254 (51%), Gaps = 11/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ Y GWQ Q++ +IQ +EKA+ + + +++ GA RTD+GVHA Sbjct: 72 KWRLVIAYDGTRYAGWQFQQSPPTIQCYLEKALIQVTKLDRKDLLLVGASRTDTGVHAFG 131 Query: 60 QVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + +S +FHARFS I + Y Y+I Sbjct: 132 QVAHFVTPFNYPSLDTIHAALNGLL--PPDIRVREISPAVPEFHARFSTISKLYHYKIYN 189 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFD 176 + A+ L+ MR AA++ +G HDF+ F S + +P++TI FD Sbjct: 190 DTFMDPFLRHYAYHSTYKLNAAAMRQAAKYFIGSHDFSAFANASRDDRVPNPVKTIFRFD 249 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA-- 234 V G L+++ V FL+ Q+R+ V L +G + K L A+DR+E A Sbjct: 250 VIEMGALLQLEVEGTGFLYRQVRNMVALLLQIGKEAVPPEIVPKILAARDRRELAKYALP 309 Query: 235 -PPEGLYFDSVEYS 247 PP GL S++Y+ Sbjct: 310 TPPHGLCLVSIKYN 323 >gi|283853830|ref|ZP_06371050.1| tRNA pseudouridine synthase A [Desulfovibrio sp. FW1012B] gi|283570781|gb|EFC18821.1| tRNA pseudouridine synthase A [Desulfovibrio sp. FW1012B] Length = 270 Score = 257 bits (658), Expect = 9e-67, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 119/252 (47%), Gaps = 8/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + GE V + GAGRTDSGVHA+ Sbjct: 1 MPRLRLTLAYDGTAFAGWQLQAPGRGRTVQGCLEEALATLCGEPVRIFGAGRTDSGVHAM 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + KALNA L +S+ +V FHARF A + Y Y + T Sbjct: 61 AQVAHVDVPEGRAAIPWQKALNALL--PADMSVAGAELVPDGFHARFCATGKVYHYTLWT 118 Query: 119 RQ-APLALEKGRAWLI--PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L + W + LD M A G HDF F++ + R + Sbjct: 119 EPGHVLPWRRPYVWDVGRYGRLDVAAMDACAACFAGFHDFAAFQNAGSDVKTTTRLVHGV 178 Query: 176 -DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + G + R A FL +R+ +G+L VG GK + D+ L R+ A Sbjct: 179 TRLATGGPEMVWRFHAEGFLKQMVRNLMGALVAVGRGKVSPEDIRSVLTQGQRRLAPQTA 238 Query: 235 PPEGLYFDSVEY 246 P GL VEY Sbjct: 239 PASGLCLVVVEY 250 >gi|323342828|ref|ZP_08083060.1| tRNA pseudouridine synthase A [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463940|gb|EFY09134.1| tRNA pseudouridine synthase A [Erysipelothrix rhusiopathiae ATCC 19414] Length = 245 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ ++Y+GS + GWQ+Q G +Q IE + + E + + G+GRTD+GVHAL Q Sbjct: 1 MMRFKATVQYDGSMFKGWQKQPFGRCVQTEIESVLTRINKEPIHISGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V + L +ALN L + I I ++ V+ FHARF + ++Y YR+ Sbjct: 61 VFHFDNVVDMDEKQLFRALNTLL--PNDIVITDIHPVEPNFHARFDVVSKTYEYRLNMGA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNS 179 E+ + K+LD + +R A + VG HDFT+F + + + +RTI +FD+ Sbjct: 119 Y-NLFERNYVYQYNKALDLQAIRDAMESFVGTHDFTSFNATGLDEIENQVRTITNFDLIV 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + ++ FL +R V + G GK + ++ + L+A D+ GL Sbjct: 178 SDDHLNFVIIGDGFLRYMVRMIVATCVACGSGKCDAHEIAQMLKAADKNSISYNIDACGL 237 Query: 240 YFDSVEY 246 Y V Y Sbjct: 238 YLKKVNY 244 >gi|195941752|ref|ZP_03087134.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 80a] gi|216264809|ref|ZP_03436801.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a] gi|224533912|ref|ZP_03674497.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a] gi|215981282|gb|EEC22089.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a] gi|224512915|gb|EEF83281.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a] Length = 246 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 124/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKFKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 + V Y Sbjct: 240 LERVYYE 246 >gi|87300888|ref|ZP_01083730.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 5701] gi|87284759|gb|EAQ76711.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 5701] Length = 316 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ + S+Q ++E+A+ + + AGRTDSGVHA Q Sbjct: 11 QRIALCLQYEGSSFCGWQRQPHQPSVQETLERALATLDPHRPIRAMAAGRTDSGVHAAGQ 70 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ ALN L +I + + V +HA FSA R Y Y + + Sbjct: 71 VVHFEASGPIPSERWAAALNGRL--PASIRVRAAAAVPSTWHACFSACYRRYRYTLYNGR 128 Query: 121 APLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + L+ M A + L+G HDF+ F+ + + + Sbjct: 129 RPNLFLSPWSWHRYRQRLNERAMATALRGLLGFHDFSAFQRAGSRRPHARTKVQAVSLER 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R +G L VG+G+ + E+ + + R E AP GL Sbjct: 189 HGDLVVVEIQASGFLYGMVRLIMGQLVAVGEGQLSLAGFERRWRQRARSEVKEAAPAHGL 248 Query: 240 YFDSVEYS 247 V Y Sbjct: 249 CLLRVGYP 256 >gi|299140694|ref|ZP_07033832.1| tRNA pseudouridine synthase A [Prevotella oris C735] gi|298577660|gb|EFI49528.1| tRNA pseudouridine synthase A [Prevotella oris C735] Length = 243 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NG S+Q +++A+ + + + + GAGRTD+GVHA Sbjct: 1 MQRYFIYLSYDGSAYHGWQIQPNGISVQEKLQEALSKLLRQKIEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L LN L I+I + V+ HARFSA R+Y Y I T++ Sbjct: 61 VAHFDFPKSIEEEQLRYRLNRLL--PRDITINKVIPVEADMHARFSAKWRTYRYYIHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + ++ P LD + M A+ L DF F S + TI Sbjct: 119 --DAFLRHYSYESPYKLDYQLMNQGAELLKSHTDFAAFCKTGADNKSTLCTIRESKWVQT 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L L+G + DL+ LQ DR G P L Sbjct: 177 SAISWYFEITANRFLRNMVRATVGTLFLLGRHHISLDDLDYILQEGDRSNAGESMPGHAL 236 Query: 240 YFDSVEY 246 + +++EY Sbjct: 237 FLENIEY 243 >gi|281425834|ref|ZP_06256747.1| tRNA pseudouridine synthase A [Prevotella oris F0302] gi|281400095|gb|EFB30926.1| tRNA pseudouridine synthase A [Prevotella oris F0302] Length = 243 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NG S+Q +++A+ + + + + GAGRTD+GVHA Sbjct: 1 MQRYFIYLSYDGSAYHGWQIQPNGISVQEKLQEALSKLLRQEIEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L LN L I+I + V+ HARFSA R+Y Y I T++ Sbjct: 61 VAHFDFPKSIEEEQLRYRLNRLL--PRDITINKVIPVEADMHARFSAKWRTYRYYIHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + ++ P LD + M A+ L DF F S + TI Sbjct: 119 --DAFLRHYSYESPYKLDYQLMNQGAELLKSHTDFAAFCKTGADNKSTLCTIRESKWVQT 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L L+G + DL+ LQ DR G P L Sbjct: 177 SAISWYFEITANRFLRNMVRATVGTLFLLGRHHISLDDLDYILQEGDRSNAGESMPGHAL 236 Query: 240 YFDSVEY 246 + +++EY Sbjct: 237 FLENIEY 243 >gi|295099211|emb|CBK88300.1| pseudouridylate synthase I [Eubacterium cylindroides T2-87] Length = 243 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 129/246 (52%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y +I+ Y+GS Y GWQ+Q+N IQ IEKA+ + + + + +GRTD+ VHAL QV Sbjct: 1 MIYKVILAYDGSNYAGWQKQENALGIQEVIEKALTTIHKKEIFITASGRTDAKVHALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ ++ P ALNA L + I IL +S+ FHARFSA + Y Y I T + Sbjct: 61 FHFEADKKIGPDRYKMALNALL--PEDIRILKVSMEADDFHARFSAKSKRYDY-ICTYEK 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSF 180 ++ +L+ E MR A+++LVG HDFT+F S P I+TI D+ Sbjct: 118 ENPFVYKYKEILNHTLNIEAMRKASEYLVGTHDFTSFSSSKIDPRKPRIKTITRIDIFEE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I FL Q+R +L +VG K + ++++ L +D+ C A P GLY Sbjct: 178 NQDIRFIYEGTGFLRYQVRMMTETLIMVGSNKIDTEEVKRILDKKDKSACRYNASPNGLY 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LVHVNY 243 >gi|302536280|ref|ZP_07288622.1| tRNA pseudouridine synthase A [Streptomyces sp. C] gi|302445175|gb|EFL16991.1| tRNA pseudouridine synthase A [Streptomyces sp. C] Length = 287 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 117/251 (46%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ V E V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRTLRTVQGELESALQTVMRLKEPVELTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA FDL E K L ++ I + + + F+ARFSAI R Y YR+ Sbjct: 70 QVAQFDLAEEVWAEHHDKLLRRLAGRLPHDIRVWKAAEAPEGFNARFSAIWRRYAYRVGD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +A L +G LD + M AA LVG HDF + + ++ IRT+ Sbjct: 130 HRAGVDPLRRGHVLWHQWPLDVDAMNEAAAALVGEHDFAAYCKKR-EGATTIRTLQQLSW 188 Query: 178 NSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + V A +F H +RS VG+L VGDG + L A R + P Sbjct: 189 ERGEDGVVTATVRADAFCHNMVRSLVGALLHVGDGHRPVEWPGQVLAAAVRDSSVHVVKP 248 Query: 237 EGLYFDSVEYS 247 GL + V Y Sbjct: 249 HGLTLEEVGYP 259 >gi|203283942|ref|YP_002221682.1| pseudouridylate synthase I [Borrelia duttonii Ly] gi|203287485|ref|YP_002222500.1| pseudouridylate synthase I [Borrelia recurrentis A1] gi|238690561|sp|B5RLM0|TRUA_BORDL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690579|sp|B5RQJ5|TRUA_BORRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|201083385|gb|ACH92976.1| pseudouridylate synthase I [Borrelia duttonii Ly] gi|201084705|gb|ACH94279.1| pseudouridylate synthase I [Borrelia recurrentis A1] Length = 245 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 122/247 (49%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + V + AGRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSLYHGFQIQPTKPTIQGEIEKALEKINKTKVKIQSAGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + F + L A+N+ LK + I I+ L V +F RF A +R Y Y I+ + Sbjct: 61 IISFYIKININLKNLKTAINSLLK--NDIRIIKLKYVSNEFQPRFHAKKRKYTYYILNNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ +A+ + K L+ + A+ L+G HDFTTF I Q +S ++ I Sbjct: 119 NHYPWEEYQAYYVRKKLNINRLNTMAEMLIGLHDFTTFSCIRDQTNSKLKEIYLAKFKKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I ++ SFL +RS VG++ + + K L++++RK AP + L+ Sbjct: 179 NKFIVFEIIGSSFLWKMVRSIVGTMIDIEIKNESVDTFIKILKSKNRKYARTTAPAKALF 238 Query: 241 FDSVEYS 247 D V Y Sbjct: 239 LDRVFYE 245 >gi|284992843|ref|YP_003411397.1| tRNA pseudouridine synthase A [Geodermatophilus obscurus DSM 43160] gi|284066088|gb|ADB77026.1| tRNA pseudouridine synthase A [Geodermatophilus obscurus DSM 43160] Length = 282 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ GW RQ ++QG +E+A+ V + V + AGRTD+GVHA QV Sbjct: 19 VRLRLGIAYDGTALHGWARQPAQRTVQGDLEEALSRVLRQPVSLTVAGRTDAGVHATGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ R + + + I++ + + F ARF A+RR Y+YR+ Sbjct: 79 AHGDVPRAVWAEQRPRLVRRLRGVLPPDIAVHTVEEAPRDFDARFGALRRHYVYRLTDAD 138 Query: 121 A-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P L + P+ LD + M +AA+ L+G HDF F + ++ IRT+ V Sbjct: 139 SGPPPLRRADTVGWPRRLDADAMAVAAELLLGLHDFAAFCRRR-EGATTIRTLLTLAVTR 197 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ +R A +F H+ +RS VG+L VG+G+ L + +R P+ PP GL Sbjct: 198 EGDLVTVRASADAFCHSMVRSLVGALTAVGEGRRPPEWPAALLTSTERSSEVPVVPPGGL 257 Query: 240 YFDSVEYS 247 V+Y Sbjct: 258 TLVGVDYP 265 >gi|187917895|ref|YP_001883458.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH] gi|238689303|sp|B2S1K1|TRUA_BORHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119860743|gb|AAX16538.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH] Length = 245 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y+G+Q Q +IQG IEKA+ ++ V VH AGRTD GVHA Q Sbjct: 1 MKKILAEIAYDGSLYYGFQIQPTKPTIQGEIEKALEKISKTKVKVHSAGRTDKGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + F + L A+N+ L+ I I+ L V +F RF+A RR Y Y I+ + Sbjct: 61 IISFYIRINIKLKNLKTAINSLLR--KDIRIIKLKYVADEFQPRFNAKRRKYSYYILNNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A+ + K L+ + A+ L+G HDFTTF I Q +S ++ I Sbjct: 119 NHYPWEGYQAYYVKKKLNINRLNEMAKMLIGIHDFTTFSCIKDQTNSKLKKIYFARFKKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI ++ SFL +RS VG++ + +K L +++RK AP + L+ Sbjct: 179 NKLIIFEIIGSSFLWKMVRSIVGTIIDIEIKNEPVYTFKKILNSKNRKFTRTTAPAKALF 238 Query: 241 FDSVEYS 247 D V Y Sbjct: 239 LDKVFYE 245 >gi|159904194|ref|YP_001551538.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9211] gi|226741290|sp|A9BCM2|TRUA_PROM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|159889370|gb|ABX09584.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9211] Length = 289 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 122/247 (49%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQV 61 R ++I+YNGSG+ GWQRQK G+S+Q +E+A+ + + + V AGRTDSGVHA QV Sbjct: 17 RIALLIQYNGSGFCGWQRQKEGNSVQSILEEAVSSLDPFQPIKVVAAGRTDSGVHASGQV 76 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD ALN L I + ++ +HA FSA R Y Y I Sbjct: 77 AHFDCSGFIPANRWAAALNGRL--PKAIRVRYSALRPITWHACFSATYRRYRYTIYNGCK 134 Query: 122 PLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W LD M +A Q + G HDFT F+ + + T++ + Sbjct: 135 PNLFLSPWCWHRYQFRLDENLMNLALQGIKGFHDFTAFQRAGSNRPNALTTVEDVHLFRQ 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ I + A FL+ +R VG L VG+ + + + E+ + + R+E APP GL Sbjct: 195 GDLVSIDIQATGFLYGMVRLLVGQLVAVGEHRISVAEFERRWKLKLREEVREAAPPNGLS 254 Query: 241 FDSVEYS 247 V Y Sbjct: 255 LIRVGYE 261 >gi|150025482|ref|YP_001296308.1| tRNA pseudouridine synthase A [Flavobacterium psychrophilum JIP02/86] gi|149772023|emb|CAL43499.1| tRNA-pseudouridine synthase I [Flavobacterium psychrophilum JIP02/86] Length = 250 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG+ Y GWQ Q N +S+Q ++ K + E + + GAGRTD+GVHA + Sbjct: 1 MRYFIEFAYNGTQYHGWQYQPNATSVQETLNKVFSTLLQEKIDIMGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N++L I I N+ V Q HARF A R+Y Y I T + Sbjct: 61 GHFDTDISIDNAKFIHKANSFL--PKDIVIFNIIPVHNQAHARFDATSRTYNYHISTYK- 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AW K +D M AA+ L+ DF F + ++ I + Sbjct: 118 -NVFTNNLAWYSSKKIDVIAMNEAAKVLLKFTDFKCFSKTNTDVNTYNCKITEAFWSIEK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L +G K T + + +++Q+R+ G P GL+ Sbjct: 177 EQLIFTITADRFLRNMVRAIVGTLINIGLHKITIENFIQIIESQNRENAGFSVPAHGLFL 236 Query: 242 DSVEYS 247 ++EY Sbjct: 237 TNIEYP 242 >gi|281420165|ref|ZP_06251164.1| tRNA pseudouridine synthase A [Prevotella copri DSM 18205] gi|281405965|gb|EFB36645.1| tRNA pseudouridine synthase A [Prevotella copri DSM 18205] Length = 247 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 115/248 (46%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G+ Y GWQ Q N +S+Q +++A+ ++ + + V GAGRTD+GVHA Sbjct: 1 MRYFIFFGYDGTNYHGWQIQPNANSVQQELQRALSILLRKEMEVVGAGRTDTGVHARHMA 60 Query: 62 AHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD R P L LN L I++ + V + HARFSAI R+Y Y I T++ Sbjct: 61 AHFDTDRIPMEPDQLVYRLNRIL--PRDIAVYEVMEVAPEMHARFSAISRTYHYYIHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 E+ + + L+ E M AAQH + D+ F + I + + Sbjct: 119 --DPFERHYSLQMNYPLNFEKMNEAAQHFLHHEDYAAFCKAGGDNKTTICHVTAARWIQT 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG K T L R + G P L Sbjct: 177 SPTTWYFEITANRFLRNMVRAVVGTLIDVGREKITMEQFLDILHNGSRSDAGESMPGNAL 236 Query: 240 YFDSVEYS 247 + + V Y Sbjct: 237 FLEDVGYD 244 >gi|327404294|ref|YP_004345132.1| tRNA pseudouridine synthase A [Fluviicola taffensis DSM 16823] gi|327319802|gb|AEA44294.1| tRNA pseudouridine synthase A [Fluviicola taffensis DSM 16823] Length = 256 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 126/250 (50%), Gaps = 8/250 (3%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 M RY + + Y G+ Y GWQ Q N SSIQ IE+ + + G + V G GRTD+GVHA Sbjct: 1 MTFRYALELAYRGTNYHGWQIQPNASSIQEEIERRLTQLNGNLPISVVGCGRTDTGVHAT 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V HFD +E L LN L + IS+ + +V ++FHARFS R+Y Y I Sbjct: 61 YYVLHFDSQKELDTEQLVFKLNKML--PEDISLFSAQLVSEEFHARFSPTTRTYHYFIHQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ P L+ R I +D E M AA+ L+G DFT+F +H + I T+ N Sbjct: 119 KKNPFLLDSHR---IVSEIDFEAMNRAARLLLGTQDFTSFSKLHTDVKTNICTVSEAKWN 175 Query: 179 SFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + A FL +R+ VG+L VG G D+ K + +DR E P + Sbjct: 176 QVSESEWYFEIKADRFLRNMVRAVVGTLLEVGYGNLGENDITKIVALKDRGEAKLSVPAK 235 Query: 238 GLYFDSVEYS 247 GL+ ++EY Sbjct: 236 GLFLVNIEYP 245 >gi|313676221|ref|YP_004054217.1| tRNA pseudouridine synthase a [Marivirga tractuosa DSM 4126] gi|312942919|gb|ADR22109.1| tRNA pseudouridine synthase A [Marivirga tractuosa DSM 4126] Length = 247 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 125/246 (50%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I Y G+ Y GWQ+Q N +Q IE+ + + + G+GRTDSGVHA QV Sbjct: 1 MRYFFTIAYKGTQYHGWQKQPNAIGVQQKIEEVFSTILNQKSEIVGSGRTDSGVHATAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P+ L N L +++ + +V ++ HARF A R+Y Y I+T + Sbjct: 61 FHFDYSGELDPLQLVFKANKML--PKDVALKHAKLVKEEAHARFDAESRAYQYHIVTEKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A+++ A+ + L E M +AA+ L+ DF +F + + +I Sbjct: 119 PFAIDQ--AYFFTQELAIEKMNLAAEKLLNYQDFESFSKVKTDVFTFNCSIFEAIWKQEV 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L VG K + + E+ ++A++RK G P GLY Sbjct: 177 DSLVFHIKANRFLRGMVRAIVGTLLDVGQHKISIENFEEIIKAKNRKSAGRAVPAHGLYL 236 Query: 242 DSVEYS 247 V+Y Sbjct: 237 TEVQYP 242 >gi|188584870|ref|YP_001916415.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus JW/NM-WN-LF] gi|229557997|sp|B2A4Q5|TRUA_NATTJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|179349557|gb|ACB83827.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus JW/NM-WN-LF] Length = 253 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 133/255 (52%), Gaps = 10/255 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M + I Y+GS Y G+Q Q+N ++Q +EKA+ V + + A RTDSGVHA Sbjct: 1 MDNIKLTIAYDGSNYHGYQLQENAVTVQEKLEKALNTVYYPYKITPYSASRTDSGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F ++ + ALN L + I+I+N +V F AR AI++ Y Y + Sbjct: 61 QVANFFAPKQIPIHKIPLALNTNL--PNDIAIINAEVVGSNFRARRDAIKKEYRYYVYHA 118 Query: 120 QAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS--PIRTIDHFD 176 + A ++LD ++ AA +G+HDF+ FR+I S P++ I FD Sbjct: 119 PYMDPFWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPFRAIQGSNPSIDPVKEIYEFD 178 Query: 177 VN----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++ GNLI +V+ +FL+ +R VG+L +G+GK ++KALQ DR GP Sbjct: 179 IDVNAGEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGP 238 Query: 233 LAPPEGLYFDSVEYS 247 A P+GL + Y Sbjct: 239 TASPQGLVLQQIWYP 253 >gi|218134082|ref|ZP_03462886.1| hypothetical protein BACPEC_01972 [Bacteroides pectinophilus ATCC 43243] gi|217991457|gb|EEC57463.1| hypothetical protein BACPEC_01972 [Bacteroides pectinophilus ATCC 43243] Length = 272 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M Y M +EY+G Y GWQR N +++ I + + +TG V + RT++GVHA Sbjct: 27 MYNYRMTLEYDGGRYAGWQRMGRDDNSNTVSAKITEVLKKMTGSDVEIFCGSRTETGVHA 86 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVA+F L RE+ + LN YL I++L L ++FH++ +A R+Y+YR+ Sbjct: 87 YGQVANFKLDREYRAREIQNYLNRYL--PQDIAVLELEETQERFHSQLNAKSRTYVYRVD 144 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T+ E+ + D + M AAQ+ +G HD+ F ++ S +R ++ D+ Sbjct: 145 TKNIANVFERRYMYHTFHKPDVDAMNKAAQYFLGEHDYKVFSTVKKN-KSTVRNVESVDI 203 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ +EI + A FLH R +G L +G G+ D+ K L E A Sbjct: 204 YDDGDTLEITIKADDFLHNMARLMIGILLDIGSGERRPEDVRKLLDGVKGVEISKPAESY 263 Query: 238 GLYFDSVEY 246 GLY VEY Sbjct: 264 GLYLLEVEY 272 >gi|307297407|ref|ZP_07577213.1| tRNA pseudouridine synthase A [Thermotogales bacterium mesG1.Ag.4.2] gi|306916667|gb|EFN47049.1| tRNA pseudouridine synthase A [Thermotogales bacterium mesG1.Ag.4.2] Length = 252 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+ Y+G+ +FG+Q Q ++QG E+A+ + + GAGRTD+GVH Q Sbjct: 3 MKRFAAIVSYDGTDFFGFQNQPGLRTVQGKFEEALHRIHKFCISSQGAGRTDTGVHGFGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V FD + ALNA L + + + VD+ F RF+A +R Y Y I T Sbjct: 63 VIAFDSNLDRLEATTMRDALNANL--PSDMYVRKVHEVDENFSPRFAAKKRIYHYYIQTS 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + W P SLD ++MR AA +L+G HDF FR +P+RTI + Sbjct: 121 SEPDIFRRRFVWWFPYSLDIKSMRRAAVNLLGEHDFAAFR-TGKDDRNPVRTITAIRIIR 179 Query: 180 FGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I IRV SFL +R+ VG+L VG G + + + L + DR APP+G Sbjct: 180 YKPYIILIRVEGISFLKRMVRNIVGTLVKVGTGSVSEESVSEFLSSHDRSTLPGTAPPQG 239 Query: 239 LYFDSVEYS 247 L F V + Sbjct: 240 LVFYKVIFD 248 >gi|72382942|ref|YP_292297.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL2A] gi|72002792|gb|AAZ58594.1| tRNA pseudouridine synthase [Prochlorococcus marinus str. NATL2A] Length = 276 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 118/250 (47%), Gaps = 5/250 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 M R ++I+Y+GSG+ GWQ QK+ ++QG++E+ I + V AGRTDSGVHA Sbjct: 1 MTNRIALVIQYDGSGFRGWQNQKDSITVQGTLEEKIAELDPIRPVKAIAAGRTDSGVHAS 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD ALN L +I +L V K +HA +SA R Y Y I Sbjct: 61 GQVVHFDCSGPIPIHKWASALNGRL--PASIKVLEAVGVPKVWHACYSAKYRRYRYSIFN 118 Query: 119 RQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + +W LD M+ A L+G HDF F+ S+ + T+ + Sbjct: 119 GSYPNLFLQNISWHKYRFMLDINLMKHALNDLLGLHDFAAFQKAGSNRSNSLTTVQDVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + +G+++ + + A FL+ +R +G L VG+ + + + R E AP Sbjct: 179 SRYGDIVTVEIQASGFLYGMVRLLMGQLVAVGEKRLSLEKFRYRWRKGLRSEVKEAAPAH 238 Query: 238 GLYFDSVEYS 247 GL V Y Sbjct: 239 GLCLIRVGYE 248 >gi|255536203|ref|YP_003096574.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium 3519-10] gi|255342399|gb|ACU08512.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium 3519-10] Length = 245 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 122/247 (49%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G YFG+Q Q +IQ +EKA+ + + GAGRTD+GVHA + Sbjct: 1 MRYFIEFSYHGKNYFGYQIQPREITIQQELEKALSTLLRAEIKTTGAGRTDTGVHAKKMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V L LN++L I++ + V HARF A R+Y Y I + Sbjct: 61 AHFDTE-IAVEDNLPYRLNSFL--PQDIAVSRIFKVKDDLHARFDATFRTYEYYISLAKN 117 Query: 122 PLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + +W I ++L+ M A + L DFT+F +H + I Sbjct: 118 P--FSQDFSWQIRNRTLEIGKMNEACRILFEYEDFTSFSKLHTDNKTNNCKIYKAFWEQN 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN ++ V A FL +R+ VG++ +G+GK DL K ++A+DR G AP +GL+ Sbjct: 176 GNELKFTVSADRFLRNMVRAIVGTMVEIGNGKIQPMDLRKIIEAKDRSFAGTSAPAQGLF 235 Query: 241 FDSVEYS 247 V Y Sbjct: 236 LVDVGYD 242 >gi|257457999|ref|ZP_05623158.1| tRNA pseudouridine synthase A [Treponema vincentii ATCC 35580] gi|257444712|gb|EEV19796.1| tRNA pseudouridine synthase A [Treponema vincentii ATCC 35580] Length = 265 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 121/252 (48%), Gaps = 8/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 + I Y+G+ + GWQ+Q ++ ++QG +E+A+ L+ V + G+GRTD+GVH Sbjct: 10 RNILLRISYDGTRFHGWQKQLQHGEESFRTVQGEVERALALLHKHPVELFGSGRTDAGVH 69 Query: 57 ALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A Q AHF P ALN+ L + I+ + V HARFSA R+Y Y Sbjct: 70 ACGQAAHFFTDIARIKPESFVPALNSAL--PKDVRIIEAAHVSDNLHARFSARSRTYRYF 127 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + A + W I + D + A L G D TTF + Q+ S R I Sbjct: 128 VHCGKTAFAHQLPYCWHIRREPDINLLNRMAGVLSGELDCTTFSAAGDQSKSKSRYIYTA 187 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + + A +FL +RS G+L T D E L+++DR+ G AP Sbjct: 188 HFFTDRDFLVFEISANAFLWRMVRSVTGTLLHYEQQNGTKEDFEAVLRSKDRRNAGETAP 247 Query: 236 PEGLYFDSVEYS 247 P+GL+ S++Y Sbjct: 248 PQGLFLWSIDYP 259 >gi|124026684|ref|YP_001015799.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL1A] gi|123961752|gb|ABM76535.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL1A] Length = 276 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 5/250 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 M R ++I+Y+G G+ GWQ QK+ ++QG++E+ I + V AGRTDSGVHA Sbjct: 1 MTNRIALVIQYDGLGFRGWQNQKDSITVQGTLEEKIAELDPIRPVKAIAAGRTDSGVHAS 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD ALN L +I +L V +HA +SA R Y Y I Sbjct: 61 GQVVHFDCSGPIPIHKWASALNGRL--PASIKVLEAVSVPSAWHACYSAKYRRYRYSIFN 118 Query: 119 RQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + +W LD M+ A L+G HDF F+ S+ + T+ + Sbjct: 119 GSYPNLFLQNISWHKYRFKLDINLMKQALNDLLGLHDFAAFQKAGSNRSNSLTTVQDVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G+++ + + A FL+ +R +G L VG+ + + + R E AP Sbjct: 179 SRDGDIVTVEIQASGFLYGMVRLLMGQLVAVGEKRLSLEKFRYRWRKGLRSEVKEAAPAH 238 Query: 238 GLYFDSVEYS 247 GL V Y Sbjct: 239 GLCLIRVGYE 248 >gi|294794578|ref|ZP_06759714.1| tRNA pseudouridine synthase A [Veillonella sp. 3_1_44] gi|294454908|gb|EFG23281.1| tRNA pseudouridine synthase A [Veillonella sp. 3_1_44] Length = 254 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+ G+Q+Q N ++QG +E + + E + ++GA RTD+GVHA QV F Sbjct: 1 MAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAKFQVCTFQ 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + +A+ A+ I I +L + + R++ + Y+Y I + L Sbjct: 61 TSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHNQLIADPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 K W + K LD + M+ A L+G HDFTT + + + P++TI V + Sbjct: 119 TKRYHWHVKKPLDIDRMQAAGNELLGTHDFTTLKGTNSTPADPVKTILGIHVKVKEAHVT 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I VV FL+ +R+ VG L VG G+ D++ L A+DR+ G AP +GL + + Sbjct: 179 ISVVGDGFLYHMVRNIVGLLVDVGLGRRKVEDIKGYLVAKDRRVIGKTAPAQGLCLEEIF 238 Query: 246 Y 246 + Sbjct: 239 F 239 >gi|332881976|ref|ZP_08449617.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680102|gb|EGJ53058.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 250 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 118/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG Y GWQ Q ++QG ++ A+ + E + V GAGRTDSGVHAL+ Sbjct: 1 MRYFIEFSYNGKNYHGWQLQPKAITVQGVLQNALTTILREEISVIGAGRTDSGVHALQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE L + LNA+L I++ ++ V HARF A++R+Y Y I ++ Sbjct: 61 AHFDTERELSDD-LVRKLNAFL--PYDIAVHSICAVKPDAHARFDALKRTYQYHISIEKS 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + L+ + M AAQ L DF F H + I G Sbjct: 118 P--FRYNYSMPLTLPLNIDVMNEAAQILFDYTDFQCFSKTHTDVKTFNCKIYEAHWAVVG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG K + T E + ++ R + G P GL+ Sbjct: 176 GELVFTITADRFLRNMVRAIVGTLINVGLQKLSLTGFEDIIISKSRSKAGASVPACGLFL 235 Query: 242 DSVEYS 247 V Y Sbjct: 236 TQVTYP 241 >gi|51598275|ref|YP_072463.1| tRNA pseudouridine synthase A [Borrelia garinii PBi] gi|62901275|sp|Q663A0|TRUA_BORGA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|51572846|gb|AAU06871.1| pseudouridylate synthase I [Borrelia garinii PBi] Length = 246 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 126/247 (51%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q Sbjct: 1 MKKILAEITYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L + FH RF+A +R Y YRI+ Sbjct: 61 IITFDININIQLNNLKKALNAIL-LKNSIKILKLKYMKNSFHPRFNAQKRKYSYRILNSN 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYLAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 D V Y Sbjct: 240 LDKVYYE 246 >gi|225850198|ref|YP_002730432.1| tRNA pseudouridine synthase A [Persephonella marina EX-H1] gi|225645344|gb|ACO03530.1| tRNA pseudouridine synthase A [Persephonella marina EX-H1] Length = 244 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 5/244 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y ++I Y G Y GWQ+Q ++QG +E+ + ++ E +V+ G+GRTD+GVHAL QVA Sbjct: 6 NYKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKEDIVLIGSGRTDAGVHALGQVA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + P + + LNA L IS+ ++ V FHARFSA ++Y+YRI T+ P Sbjct: 66 NFKTISYRKPEEIYRYLNATL--PRDISVKSVEEVPLSFHARFSAKGKTYIYRIYTK--P 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 G W I K LD + M A + + D + + I + G Sbjct: 122 DPFLHGFGWYISKKLDLKGMLEALEIVKKSKDLRSLSKKGEYLREDV-EIRELSMTYDGK 180 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +IEI++ A FL +R VG + +G G + + E ++A+D + +APPEGL+ Sbjct: 181 IIEIQITASHFLRYMVRKIVGHVVQIGLGSLSIQEFENIIEAKDPTKGLFIAPPEGLFLK 240 Query: 243 SVEY 246 V Y Sbjct: 241 EVYY 244 >gi|224534868|ref|ZP_03675437.1| tRNA pseudouridine synthase A [Borrelia spielmanii A14S] gi|224513808|gb|EEF84133.1| tRNA pseudouridine synthase A [Borrelia spielmanii A14S] Length = 246 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + + + +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + I IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDMNINIQLNNLKKALNAIL-LKSGIKILKLKHVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A+ + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWESYQAYYVNKKLNISNLNQMAKILIGSHDFTTFSCIKDRSKSKFRHIHFAKFKKK 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS VG++ + + + EK LQ+++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIVGTMLDIEIKNESISTFEKILQSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 D V Y Sbjct: 240 LDKVYYE 246 >gi|332297806|ref|YP_004439728.1| tRNA pseudouridine synthase A [Treponema brennaborense DSM 12168] gi|332180909|gb|AEE16597.1| tRNA pseudouridine synthase A [Treponema brennaborense DSM 12168] Length = 257 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 119/254 (46%), Gaps = 9/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG------SSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M + + Y+G+ + GWQRQ + ++Q +E+A+ ++ V + G+GRTDSG Sbjct: 1 MKNVLLTVSYDGTDFCGWQRQDHADRGEPVRTVQAELERALRIMLKTPVALTGSGRTDSG 60 Query: 55 VHALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VHA Q A+F P ALN+ L + + V FHARF A R+Y Sbjct: 61 VHAFAQAANFLSPFDSVPPENYVPALNSSL--PPDVRVTAAREVPPGFHARFDARMRTYR 118 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + P A E W I + D + A L G D TTF + S R ++ Sbjct: 119 YFLYCGATPPAHETRYVWPIRRYPDIARLNRMASCLYGEIDCTTFAAAGDPCESKKRYLE 178 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G+ + + A +FL +RS VGSL + + L+A+DR+ GP Sbjct: 179 KAVFYADGDKLVFEIAANAFLWKMVRSVVGSLVYYEQKGKDADFFAEILRARDRRSAGPT 238 Query: 234 APPEGLYFDSVEYS 247 APP+GL+ +V++ Sbjct: 239 APPQGLFLWNVDFE 252 >gi|297620993|ref|YP_003709130.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] gi|297376294|gb|ADI38124.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 127/246 (51%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + I Y+G+ + GWQ K G SI+G ++KA+ ++ E + ++GA RTD+GVHAL Q+A Sbjct: 6 NFLLTIAYDGTPFLGWQETKEGPSIEGELKKALRIILKEEIKLNGASRTDAGVHALGQLA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F ++ L K++NA L I + + V+ FHA + + Y YR+ Sbjct: 66 NFHTTKKPHLFTLLKSINALL--PGEIKVTAIEEVEASFHATLNNTGKQYRYRLSFGPVQ 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDVNS- 179 + R W IP LD E MR+AA+ L G HDF F ++ + S IRT+ + Sbjct: 124 FPHVRHREWHIPGKLDIEAMRLAAKSLEGTHDFKAFCNVKKNDTYDSTIRTLSKLSLAEL 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+ + FL+ R+ VG+L +G + L+K + DR + GP AP GL Sbjct: 184 ENDTLEVIMEGNHFLYKMARNIVGTLVYIGKKRIQLNTLKKLVLNGDRTQLGPTAPAHGL 243 Query: 240 YFDSVE 245 V Sbjct: 244 TLFHVF 249 >gi|291567810|dbj|BAI90082.1| tRNA pseudouridine synthase A [Arthrospira platensis NIES-39] Length = 278 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R +II+Y+G+ + GWQRQ N ++Q IE AI V E V +H AGRTDSGVHA Q Sbjct: 5 QRIALIIQYDGTHFHGWQRQPNQRTVQEDIETAISKVLKQERVPLHAAGRTDSGVHAAAQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN L + I + V +HARF A R Y Y + T Sbjct: 65 VAHFDAPAHIPAYRWATILNGRL--PADVLIRASAPVPSDWHARFDAQWRRYRYSLYTDA 122 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + W LD M A + L+G H + F+ + + Sbjct: 123 RPNLFIRQFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQRAGSSRPHAWVDVQDVECWR 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I V A FL+ +R VG L VG + + + + + R+ APP+GL Sbjct: 183 SEAFIHIEVQASGFLYGMMRLLVGLLVQVGAKERSLENFQDIWVNERREIVKSAAPPQGL 242 Query: 240 YFDSVEYS 247 V Y Sbjct: 243 CLLRVGYP 250 >gi|227494575|ref|ZP_03924891.1| tRNA-pseudouridine synthase I [Actinomyces coleocanis DSM 15436] gi|226832309|gb|EEH64692.1| tRNA-pseudouridine synthase I [Actinomyces coleocanis DSM 15436] Length = 302 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 86/265 (32%), Positives = 138/265 (52%), Gaps = 20/265 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + Y G+ + GW +Q ++QG++E+A+ LV E V + AGRTD+GVHA Q Sbjct: 1 MRFRLECAYRGTFFRGWAKQPGLRTVQGTLEEALALVLREPVELTVAGRTDAGVHASAQT 60 Query: 62 AHFDLVREWVP------------VILCKALNAYLKISD-------TISILNLSIVDKQFH 102 AHFD+ + + L + LN ++ +D + + ++ V F Sbjct: 61 AHFDVCADRLMQVTKQAEVVHACEALTRRLNRLIRRADSNASGLPDVVVYSIEPVADVFD 120 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARF+A+RR Y+YR+ L W + + L MR AA+ LVG HDF +F Sbjct: 121 ARFAALRRHYVYRVADVAGRNPLYAESVWWVEEPLQIHLMREAARALVGEHDFLSFCKPR 180 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + +S IRT++ D+ +E+R+ A +F H+ +RS VG+L VG G+ T + + Sbjct: 181 -EGASTIRTLEAVDLVETDTGLEVRLSADAFCHSMVRSIVGALVEVGRGRKPVTWIADLV 239 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 R++ PLAPP GL +V+Y Sbjct: 240 AFPSREQAAPLAPPHGLTLRAVDYP 264 >gi|210615874|ref|ZP_03290836.1| hypothetical protein CLONEX_03055 [Clostridium nexile DSM 1787] gi|210150077|gb|EEA81086.1| hypothetical protein CLONEX_03055 [Clostridium nexile DSM 1787] Length = 247 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + IEY+GS Y GWQR ++ ++I I + I +T E + + RT+ GVHA Sbjct: 1 MRNIKLTIEYDGSRYQGWQRLGKDESTNTIANKITEVIKKMTNEDIELFCGSRTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q A F + + + LN YL I+I ++ ++FHA +A + Y+YRI Sbjct: 61 YGQAASFKTTTDMTLIEIQHYLNRYL--PMDIAITDIEEKPERFHASLNATSKIYMYRIS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P E+ + K D + M+ AA LVG+HDF F ++ S ++ I DV Sbjct: 119 VSEVPSVFERKYVYHSFKRPDVDLMKQAAILLVGKHDFKKFSTVKKN-KSTVKEIYDIDV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G ++I + FLH R +G+L +G G D+E + A P+ Sbjct: 178 YDDGEELQITLHGNDFLHNMARMILGTLLDIGVGNRKKEDIELIFDSNSDVAASAPADPK 237 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 238 GLYLQEVLY 246 >gi|218658453|ref|ZP_03514383.1| tRNA pseudouridine synthase A [Rhizobium etli IE4771] Length = 244 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 132/211 (62%), Positives = 165/211 (78%), Gaps = 1/211 (0%) Query: 38 VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSI 96 +TGE V V GAGRTDSGVHA+ QV H DL +EW P L ALNA+L+++ + +SIL++ Sbjct: 16 LTGETVSVRGAGRTDSGVHAMGQVIHVDLSKEWSPYQLQNALNAHLRLAGERVSILDVEA 75 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 V + F ARFSA+RR YLYRI++R+APLALE G+AW +PK+LD E M AAQ LVGRHDF+ Sbjct: 76 VPEFFDARFSALRRHYLYRIVSRRAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFS 135 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 TFRS HCQA+SP+RT+D DV G LIEIR A+SFLH QIRSF G+LKL G+GKWT Sbjct: 136 TFRSAHCQANSPVRTLDRLDVTRSGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPD 195 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 D+E AL+A++RK CGP+APP+GLYF V+Y Sbjct: 196 DVEAALEARNRKACGPVAPPDGLYFLQVDYP 226 >gi|326792524|ref|YP_004310345.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326543288|gb|ADZ85147.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 245 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + ++I+Y+GS Y G+Q Q++ ++Q IE + +T E V + G RTD GVHA Sbjct: 1 MRNFKIVIQYDGSRYKGFQLQRDTDLTVQAKIEAVLEKMTEEQVEIIGCDRTDVGVHAEN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F + L Y + + I + ++ VD++FHAR++ ++Y Y I Sbjct: 61 YVASFKTECTLSTACMLDYL--YEFLPEDIVVKSIEEVDERFHARYNVKAKTYEYTINCG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ D ++M A G HDF +F S+ S ++TI+ ++ Sbjct: 119 AQRNVFNRKYVHHMSENFDLKSMNEVAAVFKGTHDFQSFTSLKPNGKSTMQTINEIEIIQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++++IRV A FL R +G++ G G T+ ++ + + R P+A P+ L Sbjct: 179 KGDILQIRVTADDFLLHMPRMIIGAIVEAGKGTITAQQTQEVMDKKQRATGYPMAKPKAL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 SLVEVKY 245 >gi|209527116|ref|ZP_03275630.1| tRNA pseudouridine synthase A [Arthrospira maxima CS-328] gi|209492456|gb|EDZ92797.1| tRNA pseudouridine synthase A [Arthrospira maxima CS-328] Length = 278 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 110/248 (44%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R +II+Y+G+ + GWQRQ N ++Q IE AI V E V +H AGRTDSGVHA Q Sbjct: 5 QRIALIIQYDGTHFHGWQRQPNQRTVQEDIETAIGKVLKQERVPLHAAGRTDSGVHAAAQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN+ L + I + V K +HARF A R Y Y + T Sbjct: 65 VAHFDAPAHIPAYRWATILNSRL--PADVLIRASAPVAKDWHARFDAQWRRYRYSLYTDA 122 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + W LD M A + L+G H + F+ + Sbjct: 123 RPNLFIRRFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQRAGSSRPHAWVDVQDVQCWR 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I V A FL+ +R VG L VG G+ + + + + R+ APP+GL Sbjct: 183 SEAFIHIEVQASGFLYGMMRLLVGLLVQVGAGERSLENFQDIWVNERREIVKSAAPPQGL 242 Query: 240 YFDSVEYS 247 V Y Sbjct: 243 CLLRVGYP 250 >gi|225013075|ref|ZP_03703490.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-2A] gi|225002803|gb|EEG40784.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-2A] Length = 248 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQRQ N S+Q +E A+ + E + + +GRTD+GVHA + Sbjct: 1 MRYFLEFSYAGTNYHGWQRQPNAVSVQEVLEHALSTLLKETISLLASGRTDTGVHARQMF 60 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L LN +L I + +L V + HARF A+ RSY Y I + Sbjct: 61 AHFDGKLSLETFQQLVYQLNQFL--PQDIVVHSLREVKAEAHARFDALSRSYEYHIALGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + I + LD E M AA L+ DF F + + I + + Sbjct: 119 TP--FGNSMHYRINQDLDLEAMNEAAAILLEYEDFECFSKSRTDVKTFLCDISYAQWSKT 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + A FL +R+ VG+L +G K DL ++++ R + G P +GL+ Sbjct: 177 KNGYIFTITANRFLRNMVRAIVGTLIEIGLKKKEIEDLRGIIKSKSRSKAGFSVPAQGLF 236 Query: 241 FDSVEYS 247 +EY Sbjct: 237 LTRIEYP 243 >gi|284053328|ref|ZP_06383538.1| tRNA pseudouridine synthase A [Arthrospira platensis str. Paraca] Length = 278 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R +II+Y+G+ + GWQRQ N ++Q IE AI V E V +H AGRTDSGVHA Q Sbjct: 5 QRIALIIQYDGTHFHGWQRQPNQRTVQEDIETAISKVLKQERVPLHAAGRTDSGVHAAAQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN L + I + V +HARF A R Y Y + T Sbjct: 65 VAHFDAPAHIPAYRWATILNGRL--PADVLIRASAPVPSDWHARFDAQWRRYRYSLYTDA 122 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + W LD M A + L+G H + F+ + + Sbjct: 123 RPNLFIREFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQRAGSSRPHAWVDVQDVECWR 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I V A FL+ +R VG L VG + + + + + R+ APP+GL Sbjct: 183 SEAFIHIEVQASGFLYGMMRLLVGLLVQVGAKERSLENFQDIWVNERREIVKSAAPPQGL 242 Query: 240 YFDSVEYS 247 V Y Sbjct: 243 CLLRVGYP 250 >gi|288817539|ref|YP_003431886.1| pseudouridylate synthase [Hydrogenobacter thermophilus TK-6] gi|288786938|dbj|BAI68685.1| pseudouridylate synthase [Hydrogenobacter thermophilus TK-6] gi|308751142|gb|ADO44625.1| tRNA pseudouridine synthase A [Hydrogenobacter thermophilus TK-6] Length = 241 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 5/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +++ Y G+ + GWQ Q N ++QG I++++ V E + + G RTD+GVHA Sbjct: 1 MPNYVLLLSYVGTNFHGWQVQPNLRTVQGVIKESLEKVFREDIKLVGCCRTDAGVHAKEY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +E P L KALN+ L + + I + V + F+AR+S + Y+YR++ Sbjct: 61 VANFYAKKEMEPYKLLKALNSLL--PEDVGIKRVW-VQEGFNARYSVRGKVYVYRVLNSF 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + AW +P+ LD M+ A + L GR DF+ F + + + ++ ++ Sbjct: 118 SRDAFIEPFAWRVPQKLDLSKMQKACELLAGRRDFSAFAKKEEEDKNTVIDLEEVRLSKV 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LIEI ARSFL +R VG + +G G+ + LE+ L +RK C A +GL Sbjct: 178 EDLIEISFRARSFLRYMVRRMVGCMVQIGLGRINLSHLEEYLS--NRKTCPYTAKAKGLT 235 Query: 241 FDSV 244 + V Sbjct: 236 LEKV 239 >gi|239994150|ref|ZP_04714674.1| tRNA pseudouridine synthase A [Alteromonas macleodii ATCC 27126] Length = 242 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 2/226 (0%) Query: 22 KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNA 81 + S+Q +EKA+ V E + V AGRTD+GVHA QV HF+ +NA Sbjct: 1 REVPSVQEHLEKALSTVANEPIEVQCAGRTDAGVHATGQVVHFNCDAPRSERAWTLGVNA 60 Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 L +++++ V FHARFSA R Y Y I + A+ I + LD + Sbjct: 61 NL--PNSVAVTWAKNVSDDFHARFSATHRRYRYVIHNAKMRPAILHSGVTHIHRELDEKK 118 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M +AAQ L+G DFT+FR+ CQ+ +P R + V G + I + A +FLH +R+ Sbjct: 119 MHVAAQALLGEQDFTSFRAALCQSKTPFRNVTDVSVYRQGRYVIIDIRANAFLHHMVRNI 178 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G+L +G G+ + L +DR + A P GLY V Y Sbjct: 179 TGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNGLYLVDVTYP 224 >gi|318042539|ref|ZP_07974495.1| tRNA pseudouridine synthase A [Synechococcus sp. CB0101] Length = 294 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 118/248 (47%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQ 60 R + ++Y+G+ Y GWQRQ S+Q ++E+AI + + V AGRTD+GVHA Q Sbjct: 22 RRIALCLQYDGAPYCGWQRQPRDPSVQETLERAIAALDPRRPLSVQAAGRTDTGVHAAAQ 81 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L +I + + V +HA FSA R Y Y + + Sbjct: 82 VVHFDAEGPIPAQRWPAALNGRL--PASIRVRAGAEVPADWHACFSASYRRYRYTLYNAR 139 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD + MR A + ++G HDF F S T+ V Sbjct: 140 LPNLFLAPWSWHRYQLRLDEQLMRQALEGMLGEHDFAAFERAGSSRSHSRTTLQEVTVER 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIE+ + A FL+ +R +G L VG+ + + E+ +++ R E APP GL Sbjct: 200 RGDLIEVELQASGFLYGMVRLVMGQLVAVGEQRLSLAAFERRWRSRARDEVKEAAPPHGL 259 Query: 240 YFDSVEYS 247 V Y Sbjct: 260 TLLRVGYP 267 >gi|326522897|dbj|BAJ88494.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 328 Score = 255 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 126/255 (49%), Gaps = 11/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 ++ M+I Y+G+ + GWQ Q + +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 47 RKWRMVIAYDGTKFKGWQYQPSPPTIQCFLEKALMRITKLDRKELCLVGAGRTDTGVHAR 106 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF A+N L I + +S +FHAR S + Y Y+I Sbjct: 107 GQVAHFTTPFAYHCLDSFHSAINGLL--PPDIRVREISAACGEFHARTSTKSKIYHYKIY 164 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHF 175 A+ L+ M+ AA H VG HDFT+F + + + SPI+ I F Sbjct: 165 NEAVMDPFHTNYAYHSAHKLNPHAMQEAANHFVGVHDFTSFANAVHNDRVRSPIKKISRF 224 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL-- 233 DV +I++ V FL+ Q+R+ V L VG + K + A+DRKE + Sbjct: 225 DVTKMDAIIQLEVEGTGFLYRQVRNMVALLIQVGREGLPPEIVPKIIAAKDRKELAKVAL 284 Query: 234 -APPEGLYFDSVEYS 247 APP GLY SV Y Sbjct: 285 SAPPHGLYLMSVNYD 299 >gi|224531952|ref|ZP_03672584.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116] gi|224511417|gb|EEF81823.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116] Length = 246 Score = 255 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 124/247 (50%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + + +H +GRTD GVHA Q Sbjct: 1 MRKILAEIAYDGSIYHGFQIQPKKPTVQGEIEKALMKINKKKIKIHSSGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L V FH RF+A +R Y Y I+ Sbjct: 61 IITFDININIQLNNLKKALNAIL-LKNSIKILKLKYVKNSFHPRFNAKKRKYRYCILNSN 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISIFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 D V Y Sbjct: 240 LDKVYYE 246 >gi|331092366|ref|ZP_08341192.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330401390|gb|EGG80976.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 246 Score = 255 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MII Y+G+ Y GWQRQ +IQG IEK I V G V + G+GRTD GVHA QVA+ Sbjct: 1 MIIAYDGTKYQGWQRQSGTPMTIQGIIEKTIGEVVGYPVEIDGSGRTDGGVHAGGQVANV 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L + + + LN L + I I ++ +V +FH+R A+ ++Y Y + R+ Sbjct: 61 RLSGKVEEAVFQEKLNEKL--PEDIRICHVELVLNRFHSRLDAVAKTYEYVVDMREKADV 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + K L+ E MR AA L+G+HDF+ F + S +R + + ++ + Sbjct: 119 FTRKYCYHYTKPLEPEKMRKAAALLIGKHDFSAFTDKKDE-KSAVRELYDIQIETYRQKL 177 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R F++ Q+R FVG+L G G+ + + +AL+++ R G LAP L V Sbjct: 178 YFRFYGNGFMYHQVRIFVGTLLEAGAGERSVESVLEALKSKKRVNAGFLAPAHALTLKEV 237 Query: 245 EY 246 EY Sbjct: 238 EY 239 >gi|254430842|ref|ZP_05044545.1| tRNA pseudouridine synthase A [Cyanobium sp. PCC 7001] gi|197625295|gb|EDY37854.1| tRNA pseudouridine synthase A [Cyanobium sp. PCC 7001] Length = 306 Score = 255 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 116/252 (46%), Gaps = 8/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVH 56 R + ++Y+G + GWQRQ N S+Q ++E AI ++ AGRTD+GVH Sbjct: 12 RRIALCLQYDGGAFHGWQRQHNAPSVQAALEDAIAILDPPAARPRPPRTWAAGRTDTGVH 71 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV HFD KALN L TI ++ S V +HA +SA R Y Y I Sbjct: 72 AAAQVVHFDSCGPIPAGRWPKALNGRL--PPTIRVMAASQVPPDWHACYSATYRRYRYTI 129 Query: 117 ITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +AP +W LD M A Q ++G HDF+ F+ + T+ Sbjct: 130 FNGRAPNLFLAPWSWHRYQYRLDENAMVQALQGMLGEHDFSAFQRTGSRRRHARTTLQDV 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G+L+ + + A FL+ +R +G L VG+G+ + + + +DR AP Sbjct: 190 LLEREGDLLRVELQASGFLYGMVRLVLGQLVAVGEGRLSPEAFARRWRHRDRGAVKEAAP 249 Query: 236 PEGLYFDSVEYS 247 P GL V Y Sbjct: 250 PHGLCLLRVGYP 261 >gi|330998477|ref|ZP_08322301.1| tRNA pseudouridine synthase A [Paraprevotella xylaniphila YIT 11841] gi|329568583|gb|EGG50388.1| tRNA pseudouridine synthase A [Paraprevotella xylaniphila YIT 11841] Length = 256 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 113/254 (44%), Gaps = 11/254 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q ++KA+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFLYLAYDGTSYHGWQIQPNGISVQEVLQKALATLLRQPVSITGAGRTDTGVHARMM 60 Query: 61 VAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R L LN L ISI V HARF A+ R+Y Y Sbjct: 61 VAHFDFEYADDPVRRIDGRWLTDKLNRLL--PPDISIYKTVPVAADAHARFDALSRTYHY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + ++P + + + + LD M AA L DFT+F ++ + I Sbjct: 119 YLHFGKSP--FLRAYSCRLYQMLDFGKMNEAAAALFDYTDFTSFSKVNTDTKTNNCRIMQ 176 Query: 175 FDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + A FL +R+ VG+L VG GK T ++ +DR G Sbjct: 177 ARWTELAPGEWRFEIQADRFLRNMVRAIVGTLVEVGRGKLTPEGFRAVIEGKDRCRAGES 236 Query: 234 APPEGLYFDSVEYS 247 P L+ V Y Sbjct: 237 MPGNALFLVDVAYP 250 >gi|225432191|ref|XP_002275097.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 336 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 11/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ ++I Y G+ Y GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA Sbjct: 56 KWRLVIAYEGTRYSGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWG 115 Query: 60 QVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + +S +FHARFS + Y Y+I Sbjct: 116 QVAHFLTPFNYDGLESIHAALNGLL--PPDIRVREISPAVPEFHARFSVKSKIYHYKIYN 173 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFD 176 + + L+ MR AA+H G+HDF+ F + + ++ +P++ I FD Sbjct: 174 DAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFD 233 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---L 233 VN G L+++ V FL+ Q+R+ V L +G + L +DRKE Sbjct: 234 VNEMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALS 293 Query: 234 APPEGLYFDSVEYS 247 APP GL SV+Y+ Sbjct: 294 APPHGLCLMSVKYN 307 >gi|297736816|emb|CBI26017.3| unnamed protein product [Vitis vinifera] Length = 326 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 11/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ ++I Y G+ Y GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA Sbjct: 46 KWRLVIAYEGTRYSGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWG 105 Query: 60 QVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + +S +FHARFS + Y Y+I Sbjct: 106 QVAHFLTPFNYDGLESIHAALNGLL--PPDIRVREISPAVPEFHARFSVKSKIYHYKIYN 163 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFD 176 + + L+ MR AA+H G+HDF+ F + + ++ +P++ I FD Sbjct: 164 DAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFD 223 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---L 233 VN G L+++ V FL+ Q+R+ V L +G + L +DRKE Sbjct: 224 VNEMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALS 283 Query: 234 APPEGLYFDSVEYS 247 APP GL SV+Y+ Sbjct: 284 APPHGLCLMSVKYN 297 >gi|329965278|ref|ZP_08302208.1| tRNA pseudouridine synthase A [Bacteroides fluxus YIT 12057] gi|328523298|gb|EGF50398.1| tRNA pseudouridine synthase A [Bacteroides fluxus YIT 12057] Length = 288 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 115/247 (46%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA V Sbjct: 30 QRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLMV 89 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + LN L IS+ +L V + HARF A R Y Y + T + Sbjct: 90 AHFDSETPLDVTFMADKLNRLL--PPDISVYSLRAVKPEAHARFDATARMYKYYVTTAKV 147 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + ++ D E M AA+ L DFT+F +H + I H Sbjct: 148 P--FNRRYRCRLFQTPDFERMNEAAKTLFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQLD 205 Query: 182 NL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + V A FL +R+ VG+L VG GK T + ++ +DR G P L+ Sbjct: 206 EVTWVFTVQADRFLRNMVRAIVGTLLEVGRGKLTVEGFRRVIEQKDRCRAGTSVPGNALF 265 Query: 241 FDSVEYS 247 V Y Sbjct: 266 LVDVAYP 272 >gi|284036658|ref|YP_003386588.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] gi|283815951|gb|ADB37789.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] Length = 252 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 123/247 (49%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQRQ NG S+Q +E A+ V + + + G+GRTD+GVHA +Q Sbjct: 1 MRYFLHLAYKGTKYHGWQRQPNGLSVQEVLETALSTVLRQPIAIVGSGRTDAGVHAGQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P L ++LN+ I I++ V HARF+A R Y Y+I R+ Sbjct: 61 AHFDTDVAL-PTQLLRSLNSM--IPPDIAVYECFPVRPDDHARFTAQSRYYQYQISRRK- 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +G ++ L+ E M AA L+ DF +F + + I+ Sbjct: 117 -DPFREGLVYVFTLPLNVELMNEAASRLLHHIDFESFSKVKTDVKTFNCQIEWAYWAQQP 175 Query: 182 NL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + + A FLH +R+ VG+L VG + + TD E+ + DRK G AP EGL Sbjct: 176 NGDLVFHIKANRFLHGMVRAIVGTLLAVGQERLSVTDFEQIILDHDRKRAGRAAPAEGLS 235 Query: 241 FDSVEYS 247 V Y Sbjct: 236 LVEVGYP 242 >gi|332521721|ref|ZP_08398172.1| tRNA pseudouridine synthase A [Lacinutrix algicola 5H-3-7-4] gi|332042551|gb|EGI78752.1| tRNA pseudouridine synthase A [Lacinutrix algicola 5H-3-7-4] Length = 247 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 125/246 (50%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q N S+Q +EK + + E + GAGRTD+GVHA++ Sbjct: 1 MRYFIELSYNGKAYHGWQVQPNAISVQEVLEKGLSTLLKEKISTMGAGRTDAGVHAIQLF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + +L LN++L + ISI N+ V HARF A+ R YLYRI ++ Sbjct: 61 AHFDTEVIFEEHMLQYKLNSFL--PEAISIQNIFKVKADAHARFDAVSRQYLYRIALQKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ A+L+ LD + ++ A + L DF F + + I G Sbjct: 119 PFNTEQ--AFLLKAKLDIDRIKEATKILFNYKDFQCFSKSNTDVKTYNCNIMKAQWEVVG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N ++ + A FL +R+ VG+L VG GK D+ +++++R E G P LY Sbjct: 177 NELQFTIKADRFLRNMVRAIVGTLINVGVGKLEVNDMHNIIKSKNRSEAGFSVPAHALYL 236 Query: 242 DSVEYS 247 V Y Sbjct: 237 TEVAYP 242 >gi|297829238|ref|XP_002882501.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328341|gb|EFH58760.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 323 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELHLIGAGRTDAGVHAWG 101 Query: 60 QVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 102 QVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSAHSKVYRYQIYN 159 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSPIRTIDHFD 176 ++ A+ L+ MR AA VG HDF+ F + + P++TI FD Sbjct: 160 DTFMDPFQRHWAYHCAYKLNASKMREAANLFVGMHDFSAFANATREDGLPDPLKTISRFD 219 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---- 232 V G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 220 VIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTTL 279 Query: 233 LAPPEGLYFDSVEY 246 APP GL SV+Y Sbjct: 280 PAPPHGLCLVSVKY 293 >gi|156743919|ref|YP_001434048.1| tRNA pseudouridine synthase ACD [Roseiflexus castenholzii DSM 13941] gi|189029997|sp|A7NR34|TRUA_ROSCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156235247|gb|ABU60030.1| tRNA pseudouridine synthase A [Roseiflexus castenholzii DSM 13941] Length = 270 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 124/251 (49%), Gaps = 8/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ + G Q Q NG S+QG++E A +TGE + AGRTD+GVHA Q Sbjct: 1 MRNIALRIEYDGTDFVGSQWQTNGRSVQGALEAAWQQLTGERRRMILAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + LN L + I IL V ++FHAR+SA+RR Y Y I + Sbjct: 61 VANVSTNTRHSLATIIRGLNGVL--PEDIGILAAWEVPEEFHARYSAVRREYRYVIDNGR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + A +P+ LD M A Q ++G HDF S Q S +R Sbjct: 119 TPSPLLRRHAAYVPRRLDVAAMDRAIQQVIGTHDFAPL-SDGPQEGSTVRICYDARCTCT 177 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L+ I V A +FL +R+ VG+L VG+G+ + L +R+ LAP Sbjct: 178 EVWGQPLVLIDVAANAFLRHMVRNLVGTLIQVGEGRIDADGFAAVLAGANRR-ARVLAPA 236 Query: 237 EGLYFDSVEYS 247 GLY +V Y Sbjct: 237 HGLYLMAVRYP 247 >gi|46446316|ref|YP_007681.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia amoebophila UWE25] gi|51316630|sp|Q6MDE3|TRUA2_PARUW RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|46399957|emb|CAF23406.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia amoebophila UWE25] Length = 262 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 114/250 (45%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G YFGWQ+ G S++ +++ ++ + + + A RTD GVHA Q Sbjct: 15 MQNIKLKIAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHTISLQAASRTDKGVHARGQ 74 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +F + +LN+ L + IL+ + FH + + + Y Y I Sbjct: 75 IVNFLTTKSITDLQKFILSLNSLL--PTDLRILSAEKMPSTFHPTLNCVAKEYCYYICYD 132 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSPIRTIDHFDV 177 L + +W P L M A L+G HDF+ F + + IR + + Sbjct: 133 FVQLPEYRPYSWHCPFPLMLGKMTQAISVLIGEHDFSAFCNFKKNVNYTDYIRRVQAIHL 192 Query: 178 NSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + IR+ FL+ +R+ VG+L +G GK D+ LQ+QDRK G AP Sbjct: 193 EVLNHKRLCIRIKGNHFLYKMVRNIVGTLIYIGKGKLMVEDIPSILQSQDRKMAGVTAPA 252 Query: 237 EGLYFDSVEY 246 GL+ +V Y Sbjct: 253 HGLFLQTVLY 262 >gi|320160443|ref|YP_004173667.1| tRNA pseudouridine synthase A [Anaerolinea thermophila UNI-1] gi|319994296|dbj|BAJ63067.1| tRNA pseudouridine synthase A [Anaerolinea thermophila UNI-1] Length = 259 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I+ Y+G+ + G+QRQ ++Q +EKA+ + + +GRTD+GVHA Q Sbjct: 1 MARYKVILAYDGTHFQGFQRQAGARTVQAEVEKALRSLGWGEESLLSSGRTDTGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FDL L ALNA L + ++ + V FH RF+AI R+YLYRII + Sbjct: 61 VIAFDLDWRHSLEALRNALNARL--PEDVAAKQVEEVPGDFHPRFNAIERAYLYRIIVAE 118 Query: 121 APLALEKGRAWLIPKSLDC-ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + AW + L+ E ++ AAQ L G HDF+ F + + S +R I + Sbjct: 119 TRDPLRERYAWRLWPPLEAPEALQSAAQALCGTHDFSAFGTPPVEGGSTLRHIYQAEWRE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ V +FL+ +R V + VG + + D +A+Q Q R LAP GL Sbjct: 179 NGDEWLFEVRGNAFLYHMVRRMVWAQVQVGLNRLSLADFLEAVQ-QARPLPPGLAPAHGL 237 Query: 240 YFDSVEY 246 V Y Sbjct: 238 VLTGVRY 244 >gi|255036264|ref|YP_003086885.1| tRNA pseudouridine synthase A [Dyadobacter fermentans DSM 18053] gi|254949020|gb|ACT93720.1| tRNA pseudouridine synthase A [Dyadobacter fermentans DSM 18053] Length = 248 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 124/247 (50%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQ+Q N +Q +E A+ V V V G+ RTD+GVHA +Q Sbjct: 1 MRYFIEFSYRGTAYNGWQKQNNALGVQEVLEAALAKVLRAPVEVTGSSRTDAGVHAEQQF 60 Query: 62 AHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFDL V L LNA + I++ L V + H+RF+A R Y YRI ++ Sbjct: 61 AHFDLPAAIPDVDLMVYKLNAL--VPKDIAVQRLIPVAEDVHSRFAATHRKYEYRITFQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P A + ++LD M AA L+ +DF +F IH ++ TI Sbjct: 119 NP--FLTDLATQMRRNLDVPRMNEAAALLLAHNDFESFSKIHTNVNNFRCTITESRWVEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ V A FL +R+ VG++ VG K T D E+ + +++RK G AP EGL+ Sbjct: 177 GEMLVFHVKANRFLRGMVRALVGTMLEVGRQKITVDDFEQIILSRNRKNAGAQAPAEGLF 236 Query: 241 FDSVEYS 247 V Y Sbjct: 237 LVEVGYP 243 >gi|297180263|gb|ADI16482.1| pseudouridylate synthase [uncultured bacterium HF4000_05M23] Length = 273 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 119/250 (47%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ +++EY+G+ + G Q Q N ++QG IE A+ + E + VH A RTDSGVHA QV Sbjct: 1 MRFGLVVEYDGTNFHGSQLQSNARTVQGEIESALLQIFSEKIRVHFASRTDSGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIV---DKQFHARFSAIRRSYLYRIIT 118 FD + P + KALN + + I +V F R A R+Y+Y Sbjct: 61 GRFDAETDMPPDQIRKALNFHTTT--DVRIRCAQLVEDGPDGFDPRGDASARTYVYTFND 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDV 177 + AL++ + K LD M A+Q LVG HDF +F + +R ++ Sbjct: 119 APSEPALDRHYVTHVRKPLDEIAMNDASQALVGLHDFASFAGPKAPHDALTMRNVETAST 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ IE ++ A +FLH QIR G L VG G + L +R + P + Sbjct: 179 TRIGDSIEFKITANAFLHQQIRRIAGVLCDVGTGGSPVAVVGDLLATAERGAASHVMPAQ 238 Query: 238 GLYFDSVEYS 247 GL + + Y Sbjct: 239 GLCLEKIAYE 248 >gi|298491424|ref|YP_003721601.1| tRNA pseudouridine synthase A ['Nostoc azollae' 0708] gi|298233342|gb|ADI64478.1| tRNA pseudouridine synthase A ['Nostoc azollae' 0708] Length = 275 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ ++Q IE AI + G V +HGAGRTD+GVHA Q+A Sbjct: 12 RVALVIQYRGTHFRGWQRQSCQRTVQEEIETAIATILGYHVTLHGAGRTDAGVHAAAQIA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD LN+YL I I + V+ +HARFSA+ R Y Y I T P Sbjct: 72 HFDATGFIPAHKWATVLNSYL--PPDILIRASASVNDFWHARFSAVSRRYRYTIYTEVLP 129 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +W LD ++ A + L+G+H F S + + + G Sbjct: 130 NLFVNPFSWHYYYAPLDESVIQAALKPLLGKHHLAAFHRAGSARSHSWVEVQVAECHRSG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ +R VG L +G G+ T + + + + R++ APP+GL Sbjct: 190 PFIHIEIQANGFLYGMVRLLVGMLVQLGSGQVTLDNFTEIWKEERREKVKYAAPPQGLCL 249 Query: 242 DSVEYS 247 VEY Sbjct: 250 LRVEYP 255 >gi|28377870|ref|NP_784762.1| tRNA pseudouridine synthase A [Lactobacillus plantarum WCFS1] gi|254556054|ref|YP_003062471.1| tRNA pseudouridine synthase A [Lactobacillus plantarum JDM1] gi|308180048|ref|YP_003924176.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258756|sp|Q88XU9|TRUA_LACPL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28270703|emb|CAD63609.1| pseudouridylate synthase A [Lactobacillus plantarum WCFS1] gi|254044981|gb|ACT61774.1| tRNA pseudouridine synthase A [Lactobacillus plantarum JDM1] gi|308045539|gb|ADN98082.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 262 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 123/251 (49%), Gaps = 7/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 RY +++ Y+G+ + G+QRQ + +++ + KA+ + E +V++GAGRTD+GVHA Sbjct: 3 TRYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAF 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q HFDL E P + + LN+ L + +SIV FHAR+ + + Y YR Sbjct: 63 GQTLHFDLPYEINPEGVRRGLNSML--PMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQ 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ + D + ++ A L GRHDF+TF + QA +R I Sbjct: 121 NEFVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAW 180 Query: 179 SFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I+ FL+ Q+R V L +G G+ + L A+DR++ AP Sbjct: 181 ALPDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPA 240 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 241 AGLYMKKVYYE 251 >gi|218129428|ref|ZP_03458232.1| hypothetical protein BACEGG_01005 [Bacteroides eggerthii DSM 20697] gi|317477530|ref|ZP_07936755.1| tRNA pseudouridine synthase A [Bacteroides eggerthii 1_2_48FAA] gi|217988158|gb|EEC54481.1| hypothetical protein BACEGG_01005 [Bacteroides eggerthii DSM 20697] gi|316906331|gb|EFV28060.1| tRNA pseudouridine synthase A [Bacteroides eggerthii 1_2_48FAA] Length = 251 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 115/248 (46%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSDAPLDVDFMADKLNRLL--PPDISVYRLRAVRPDAHARFDATARMYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ + ++ D E M AAQ L DFT+F +H + I H Sbjct: 119 MP--FDRQYRCRLFQTPDFERMNEAAQTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQV 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ +DR G P L Sbjct: 177 DEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVEGFRRIIEQKDRCRAGTSVPGNAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVTYP 244 >gi|282601160|ref|ZP_05980960.2| tRNA pseudouridine synthase A [Subdoligranulum variabile DSM 15176] gi|282570067|gb|EFB75602.1| tRNA pseudouridine synthase A [Subdoligranulum variabile DSM 15176] Length = 249 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y + I Y G+ Y G+Q Q N ++ ++ A+ V G V G RTD+GVHA R Sbjct: 1 MTYLLWITYKGTNYAGFQVQPNAPTVCAVLQDAMQAVLGSRPDVKGCSRTDAGVHARRFA 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + ALNA+L I L + V + FHAR++A ++Y Y I+ + Sbjct: 61 LSFCYTGRVPAEKIVPALNAHL--PPDIRALAVQAVPEGFHARYAAHEKTYCYHILNARI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS---SPIRTIDHFDVN 178 + + LD M+ AA VG HDF + + +RTI V+ Sbjct: 119 DDPFTLDTCHRVAQPLDLAAMQAAAAQFVGTHDFLALCASGSSVAAHGDTVRTISRCTVS 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I V A +L+ +R G+L G K T + LQ++DR++ GP P +G Sbjct: 179 RCGDRFVITVTADGYLYNMVRILAGTLVEAGLHKRTPDSIPALLQSRDRRQAGPTLPAKG 238 Query: 239 LYFDSVEYS 247 L+ + V Y Sbjct: 239 LFLEDVAYP 247 >gi|16329915|ref|NP_440643.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803] gi|3915173|sp|P73295|TRUA_SYNY3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1652401|dbj|BAA17323.1| pseudouridine synthase 1 [Synechocystis sp. PCC 6803] Length = 275 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 120/248 (48%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++++Y G+ + GWQRQ N SSIQ +E AI V G+ V +HGAGRTD+GVHA QV Sbjct: 10 QRVALVMQYLGTHFHGWQRQPNFSSIQEEVELAIAKVVGQPVTLHGAGRTDAGVHAAAQV 69 Query: 62 AHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + P K LN +L I + + VD +HARFSA+ R Y Y I T Q Sbjct: 70 AHFDDPVGQIPPHRWSKILNGHL--PQDIIVRGSAAVDSHWHARFSALWRRYRYSIYTDQ 127 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + L + ++ A + L+G+H F + + Sbjct: 128 WPNLFADQFSWHYYRFPLQEKTIQAAMEPLLGKHHLAAFHRAGSARRHSWVEVQGVECYR 187 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + + A FL+ +R VG L VG G+ + TD Q R AP +GL Sbjct: 188 RGPMVYLEIQANGFLYGMVRLLVGMLAEVGSGQRSLTDFNDIWVNQRRDLVKYAAPAKGL 247 Query: 240 YFDSVEYS 247 V Y Sbjct: 248 CLLRVGYE 255 >gi|297192674|ref|ZP_06910072.1| tRNA pseudouridine synthase A [Streptomyces pristinaespiralis ATCC 25486] gi|197721671|gb|EDY65579.1| tRNA pseudouridine synthase A [Streptomyces pristinaespiralis ATCC 25486] Length = 286 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 117/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW +Q G ++QG IE A+ VT G + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQAGGRRTVQGEIEDALRTVTRSGTTYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL E K L ++S + I +++ + F+ARFSAI R Y YR+ Sbjct: 70 GQVAHVDLPSELWAEHREKLLKRLAGRLSRDVRIWSVAEAPEGFNARFSAIWRRYAYRVT 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD M A+ LVG HDF + ++ IRT+ Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVAAMNEASAGLVGEHDFAAYCKKR-DGATTIRTLQQLS 188 Query: 177 VNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +I V A +F H +RS VG+L VGDG + K L A R + Sbjct: 189 WERDPSGVITATVKADAFCHNMVRSLVGALLFVGDGHRPAEWPAKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|168028382|ref|XP_001766707.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682139|gb|EDQ68560.1| predicted protein [Physcomitrella patens subsp. patens] Length = 331 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 60/306 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G+QRQK ++QG +E A G+ V+ + RTD+GVHAL Sbjct: 10 QRYLITVEYIGTRFLGFQRQKGKRTVQGCLESAFEKFIGQPVISAVSSRTDTGVHALANT 69 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD---TISILNLSIVDKQFHARFSA 107 H D+ R P ++ A+N +L ++++ + V FHAR+ A Sbjct: 70 CHVDVERKSKRKPGEVMPPHEPRVVQTAINHFLHAQKDAGDMAVVGVQCVSPDFHARYRA 129 Query: 108 IRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R+Y YR++T + +K +AW + + L+ +M A + LVG HDF++FR+ CQA+ Sbjct: 130 QERTYHYRVLTGNRQMSVFQKDQAWHVSEELNLTSMMEACKVLVGHHDFSSFRATGCQAN 189 Query: 167 SPIRTIDHFDVNSFG--------------------------------------------- 181 SPIRT+D V Sbjct: 190 SPIRTLDELHVCEMPAWPCFPSPEERQQSSQNAETKDLESTTSELKDPILTSKLGTSEKL 249 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I ARSFL+ Q+R VG+LK VG G T D+++ L A+ + +AP GLY Sbjct: 250 RCFVITARARSFLYHQVRLMVGTLKAVGCGDLTVQDVQRILDARTITQAPAMAPACGLYL 309 Query: 242 DSVEYS 247 +V+Y Sbjct: 310 ANVKYD 315 >gi|300173999|ref|YP_003773165.1| tRNA pseudouridine synthase A [Leuconostoc gasicomitatum LMG 18811] gi|299888378|emb|CBL92346.1| tRNA pseudouridine synthase A [Leuconostoc gasicomitatum LMG 18811] Length = 255 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 86/257 (33%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTD 52 M RY I+ Y+GS +FG+Q Q + ++QG + KA+ + + V GA RTD Sbjct: 1 MPRYKAIVSYDGSDFFGFQVQTKNGVERQRTVQGELNKAVNQMAKNPTPAIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + + + K LN L I I ++ V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFDINVIGVRKGLNTLL--PKDIIIQSVDQVANDFHARFNTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T+ ++ LD E ++IA L+G HDF +F + Q + IRTI Sbjct: 119 VYRVSTQDFTDPFKRFYTGHFQWQLDVERIKIALPDLLGEHDFASFAASGNQTITTIRTI 178 Query: 173 DHFD--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 D VN+ + +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 179 TRADLKVNNDEQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIIRLIAVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D + Y Sbjct: 239 RFTAPASGLYLDEIYYD 255 >gi|110737769|dbj|BAF00823.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana] Length = 323 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWG 101 Query: 60 QVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 102 QVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSASSKVYRYQIYN 159 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHFD 176 ++ A+ L+ MR AA VG+HDF+ F + + P++TI FD Sbjct: 160 DTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFD 219 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---- 232 V G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 220 VIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSL 279 Query: 233 LAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 280 PASPHGLCLVSVKY 293 >gi|300767857|ref|ZP_07077767.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494842|gb|EFK30000.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 273 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 123/251 (49%), Gaps = 7/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 RY +++ Y+G+ + G+QRQ + +++ + KA+ + E +V++GAGRTD+GVHA Sbjct: 14 TRYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAF 73 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q HFDL E P + + LN+ L + +SIV FHAR+ + + Y YR Sbjct: 74 GQTLHFDLPYEINPEGVRRGLNSML--PMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQ 131 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ + D + ++ A L GRHDF+TF + QA +R I Sbjct: 132 NEFVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAW 191 Query: 179 SFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I+ FL+ Q+R V L +G G+ + L A+DR++ AP Sbjct: 192 ALPDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPA 251 Query: 237 EGLYFDSVEYS 247 GLY V Y Sbjct: 252 AGLYMKKVYYE 262 >gi|229489482|ref|ZP_04383345.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121] gi|229323579|gb|EEN89337.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121] Length = 294 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ + ++ G IE + V V + AGRTD+GVHA QV Sbjct: 21 VRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRRPVQLTVAGRTDAGVHATGQV 80 Query: 62 AHFDLVREWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ E +P + + + + + +S+V F ARFSA+RR Y YR+ Sbjct: 81 AHVDVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAMRRYYEYRVTNAA 140 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L PK LD M+ A+ L+G H+F F + ++ +R + FD Sbjct: 141 FGVEPLRARDTVSYPKPLDLGAMQEASNRLLGLHNFAAFCKRR-EGATTVRELQRFDWTQ 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + V A +F + +RS VG++ VG+G+ T+ + L R +AP GL Sbjct: 200 VGTVFTAYVNADAFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETSRSSSILVAPAHGL 259 Query: 240 YFDSVEYS 247 V+Y Sbjct: 260 SLVRVDYP 267 >gi|30680075|ref|NP_187351.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|119360081|gb|ABL66769.1| At3g06950 [Arabidopsis thaliana] gi|332640958|gb|AEE74479.1| tRNA pseudouridine synthase A [Arabidopsis thaliana] Length = 323 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWG 101 Query: 60 QVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 102 QVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSASSKVYRYQIYN 159 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHFD 176 ++ A+ L+ MR AA VG+HDF+ F + + P++TI FD Sbjct: 160 DTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFD 219 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---- 232 V G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 220 VIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSL 279 Query: 233 LAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 280 PASPHGLCLVSVKY 293 >gi|310658388|ref|YP_003936109.1| tRNA pseudouridine synthase a [Clostridium sticklandii DSM 519] gi|308825166|emb|CBH21204.1| tRNA pseudouridine synthase A 2 (tRNA-uridine isomerase I 2) (tRNA pseudouridylate synthase I 2) [Clostridium sticklandii] Length = 245 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + ++Y G+ Y GWQR K+ ++IQG +E + +T E V V G RTD GVHA Sbjct: 1 MRNIKIALQYEGTRYLGWQRLKDQDNTIQGKLEDLLNKMTDEEVQVIGCSRTDKGVHAKS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +A+F + + +N YL + I + + D +FHAR +A + Y + I Sbjct: 61 LIANFHTNSKMTLHEIQTYMNYYL--PEDIRVTYIEEADDKFHARHNAKTKVYRFTIDNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A PK LD + M AA +L+G HD+ F ++ + S ++I + Sbjct: 119 SFADVFTRKTAIHQPKQLDIKAMEKAANYLIGTHDYDAFTTMKSKKKSCRKSIKSIAITK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N + + FLH IR G+L VG G+ + +L L ++DR GP+ +GL Sbjct: 179 KNNYVYLEFEGEGFLHNMIRIITGTLIRVGTGEISPEELANILASKDRSLSGPMVEGKGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 MLMQVNY 245 >gi|282877805|ref|ZP_06286618.1| tRNA pseudouridine synthase A [Prevotella buccalis ATCC 35310] gi|281300121|gb|EFA92477.1| tRNA pseudouridine synthase A [Prevotella buccalis ATCC 35310] Length = 243 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+S+Q +++A+ ++ E +V GAGRTD+GVHA + Sbjct: 1 MHRYFICFRYDGTAYHGWQVQPNGNSVQAELQQAMSVILREPIVTVGAGRTDAGVHARKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E LN L IS+LN+ + + HARFSA R+Y Y I + Sbjct: 61 FAHFDFHAEIDTKQFTYKLNRLL--PRDISVLNVFSLSEDMHARFSAKWRTYHYYIHLSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + +P LD M AA HL+ DF F + + + + + Sbjct: 119 NP--FLRHYSCQLPYQLDFSLMNEAASHLLKVEDFGAFCKSNTDVKTTLCHVVQAEWVEV 176 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + A FL +R+ VG+L VG + T + + +++ +R + G P L Sbjct: 177 GEDAWYFVIKANRFLRNMVRAVVGTLIEVGRHRMTLDEFDAVVRSGNRTKAGESMPANAL 236 Query: 240 YFDSVEY 246 + + VEY Sbjct: 237 FLEDVEY 243 >gi|72163015|ref|YP_290672.1| tRNA pseudouridine synthase A [Thermobifida fusca YX] gi|71916747|gb|AAZ56649.1| tRNA pseudouridine synthase [Thermobifida fusca YX] Length = 296 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 110/250 (44%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALRQ 60 R + I Y+G+ + GW Q ++QG ++ A+ V + AGRTD+GVHA Q Sbjct: 25 TRLRLDISYDGTDFSGWAEQPGRRTVQGELQAALARVLRIPTPQLTVAGRTDAGVHARGQ 84 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D+ W + + + ++ F ARFSA+ R Y+YR+ Sbjct: 85 VAHVDVPASVWEAEGERLLRRLAGVLPPDVRVTAVAPAPPGFDARFSALFRRYVYRVSDA 144 Query: 120 QAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + + LD + M AA L+G HDF + + +S +R + + Sbjct: 145 PGGVDPLRRHEVLWHRRPLDVDRMNEAAAALLGEHDFAAYCRKR-EGASTVRELQRLEWR 203 Query: 179 SFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + V A +F H +R+ VG+L VGDG+ + L+A R + PP Sbjct: 204 RESEHVYAATVQADAFCHNMVRALVGALLAVGDGRRPPEWPAQVLRAGVRDSAVHVVPPH 263 Query: 238 GLYFDSVEYS 247 GL + V Y Sbjct: 264 GLTLEEVRYP 273 >gi|313205364|ref|YP_004044021.1| tRNA pseudouridine synthase a [Paludibacter propionicigenes WB4] gi|312444680|gb|ADQ81036.1| tRNA pseudouridine synthase A [Paludibacter propionicigenes WB4] Length = 251 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 117/247 (47%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + Y G+ Y GWQ Q NG S+Q + +A+ + + + GAGRTD+GVHA V Sbjct: 3 RRYFIYFSYKGTAYHGWQMQPNGISVQEVLTRALCTILRTNLEIVGAGRTDAGVHAKLMV 62 Query: 62 AHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L LN++L ISI ++ V HARF AI R Y Y I T + Sbjct: 63 AHFDFETALPSEFDLVAKLNSFL--PGDISIYKIAEVKPDAHARFDAISRRYEYHIFTNK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A LD E M +AA+ L DFT+F +H + I H + Sbjct: 121 --NVFKNELAVRESDKLDFEAMNLAAKTLTKFKDFTSFSKLHTDVKTNNCQIHHAEWTQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + A FL +R+ VG+L VG K + + + A++R + G P GLY Sbjct: 179 GDEWVFTIEADRFLRNMVRAIVGTLFEVGRRKMNTDEFATVIAAKNRCKAGVSVPAHGLY 238 Query: 241 FDSVEYS 247 ++Y Sbjct: 239 LVDIKYP 245 >gi|194366624|ref|YP_002029234.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia R551-3] gi|238693473|sp|B4SQV6|TRUA_STRM5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|194349428|gb|ACF52551.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia R551-3] Length = 256 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E+A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLEQALSSVADTPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P L ++ +I++ V FHARFSA R Y YR++ R+ Sbjct: 61 VVHFDTDVVRDPRAWM--LGTTTRLPRSIAVRWCVPVADDFHARFSARARRYRYRLLNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ALE+ ++LD M IA Q L+G +DF FRS+ CQA R + V+ Sbjct: 119 VRPALERQTLSWERRALDETRMHIAGQALLGENDFNAFRSVQCQALHARRELQSLQVSRH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 GEVIEVSVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAPPQGLV 238 Query: 241 FDSVEYS 247 F Y Sbjct: 239 FLGPLYP 245 >gi|189467951|ref|ZP_03016736.1| hypothetical protein BACINT_04345 [Bacteroides intestinalis DSM 17393] gi|189436215|gb|EDV05200.1| hypothetical protein BACINT_04345 [Bacteroides intestinalis DSM 17393] Length = 253 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 116/248 (46%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + +A+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGDSVQECLMRALATLMRREVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V LN L ISI + V HARF A R Y Y + T + Sbjct: 61 VAHFDSDEPLDTVFFTDKLNRLL--PPDISIYRIRAVKPDAHARFDATARMYKYYVTTVK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + ++ D E M AA+ L DFT+F +H + I H Sbjct: 119 SP--FNRQYRCRLFQAPDFERMNEAARILFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQV 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL +R+ VG+L VG GK T + ++ +DR + G P L Sbjct: 177 DDVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVEGFRRVIEQKDRCKAGTSVPGNAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVTYP 244 >gi|218960843|ref|YP_001740618.1| putative pseudouridylate synthase I [Candidatus Cloacamonas acidaminovorans] gi|167729500|emb|CAO80411.1| putative pseudouridylate synthase I [Candidatus Cloacamonas acidaminovorans] Length = 274 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I Y+G+GY GWQ+QKNG +IQ +EK + + G+ + AGRTD+GVH+L Q Sbjct: 3 MARYLIKICYDGTGYCGWQKQKNGLAIQEVMEKMLEIFAGKKTSLIAAGRTDAGVHSLGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L A N YL D+I +L + V +AR+ A RSY YR+ + Sbjct: 63 YAHFDYSGSMQEKQLFLAFNRYL--PDSIKVLEIMKVSPCLNARYQAYERSYRYRLAKEK 120 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + P L+ E M+ A Q+L+G+HDF+TF + + + I + H ++ Sbjct: 121 TP--FNRNYSGFFPHLHLNLEKMQSAVQYLLGKHDFSTFGKSNPEVPNRICELKHISISE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEG 238 A FLH +R VG+L + + + L+ + R+ AP G Sbjct: 179 TERYFVFDFTADRFLHNMVRRIVGTLANISHLHLPPETVLEILENRCPRQNLVITAPASG 238 Query: 239 LYFDSVEYS 247 LY V+Y Sbjct: 239 LYLMDVKYP 247 >gi|46199569|ref|YP_005236.1| tRNA pseudouridine synthase A [Thermus thermophilus HB27] gi|55981600|ref|YP_144897.1| tRNA pseudouridine synthase A [Thermus thermophilus HB8] gi|51316686|sp|Q72I65|TRUA_THET2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901217|sp|Q5SHU9|TRUA_THET8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46197195|gb|AAS81609.1| tRNA pseudouridine synthase A [Thermus thermophilus HB27] gi|55773013|dbj|BAD71454.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Thermus thermophilus HB8] Length = 253 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 124/252 (49%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ + ++QG +E+A+ + G + AGRTD+GVHAL Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D+ + +ALN L + + ++ V FHAR A+ R+Y YRI+ R Sbjct: 60 MPFHVDVESAIPVEKVPEALNRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 P L + RA + + LD E M A L+GRH+F F + R + + Sbjct: 118 PHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGE--RELLEARLQV 175 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G + + +SFL Q+R VG+L VG GK L+ L+ DR+ GP AP Sbjct: 176 AEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAP 235 Query: 236 PEGLYFDSVEYS 247 GLYF Y Sbjct: 236 AHGLYFVEAAYP 247 >gi|226305372|ref|YP_002765330.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4] gi|226184487|dbj|BAH32591.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4] Length = 294 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ + ++ G IE + V + V + AGRTD+GVHA QV Sbjct: 21 VRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRQPVQLTVAGRTDAGVHATGQV 80 Query: 62 AHFDLVREWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ E +P + + + + + +S+V F ARFSAIRR Y YR+ Sbjct: 81 AHVDVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAIRRYYEYRVTNAA 140 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L PK LD M+ A+ L+G H+F F + ++ +R + FD Sbjct: 141 FGVEPLRARDTVSYPKPLDLAAMQEASNRLLGLHNFAAFCKRR-EGATTVRELQRFDWAQ 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + V A +F + +RS VG++ VG+G+ T+ + L R +AP GL Sbjct: 200 EGTVFTAYVNADAFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETLRSSSILVAPAHGL 259 Query: 240 YFDSVEYS 247 V+Y Sbjct: 260 SLVRVDYP 267 >gi|85860424|ref|YP_462626.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] gi|85723515|gb|ABC78458.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] Length = 328 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 133/247 (53%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++Y + +EY+G+GY GWQ QKN SIQG++ + + G V + GAGRTD+GVHAL QV Sbjct: 65 VKYRLTLEYDGTGYSGWQMQKNAKSIQGTLLRVAEDLLGGPVDIQGAGRTDAGVHALAQV 124 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH + R P L + LN L +I+IL + FHAR SA RSYLY I + Sbjct: 125 AHLETTRRMPPRKLLEGLNDAL--PSSINILRVEEAPPLFHARHSAQLRSYLYVISGHRT 182 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT-IDHFDVNSF 180 A K W I L+ + M+ A++ G HDF++F +P R ++ ++++ Sbjct: 183 --AFGKRYVWWIRDHLELKKMQAASRLFAGFHDFSSFADKRMDKQAPTRVKVEATELHAS 240 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI RV FL +R VG + VG K +D+ + L++ + APP GLY Sbjct: 241 GDLIFFRVTGSHFLWKMVRRMVGVMVEVGREKLDISDVRQMLKSYSPEPARLTAPPSGLY 300 Query: 241 FDSVEYS 247 + V Y Sbjct: 301 LERVLYE 307 >gi|89890586|ref|ZP_01202096.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] gi|89517501|gb|EAS20158.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] Length = 251 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 119/245 (48%), Gaps = 4/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y+G+ Y GWQRQ ++Q +E+ + + E + V GAGRTD+GVHA VA Sbjct: 6 RYFIELAYDGTAYHGWQRQPQSITVQEVLEEGLHKMLREQIKVQGAGRTDAGVHAAYMVA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD L LN +L I++ + V HARF A +RSY Y + R P Sbjct: 66 HFDYSGAIDLDHLVYRLNRWL--PKDIAVYEVKPVVNNAHARFHAYKRSYEYHFLLR--P 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + +A+++ + D + M+ AA L DF F + + + + + Sbjct: 122 DPFQVMQAYVLFRKPDFKLMQEAAAILPEYKDFECFSRSNTDVKTYVCDLTEAYFEFKDH 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + A FL +R+ VG+L +G GK T DL + + ++DR G AP GL+ Sbjct: 182 KVIFHITANRFLRNMVRAVVGTLLDIGYGKKTIEDLREIIASKDRSNAGASAPAGGLFLT 241 Query: 243 SVEYS 247 + Y Sbjct: 242 KIHYP 246 >gi|256820760|ref|YP_003142039.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea DSM 7271] gi|256582343|gb|ACU93478.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea DSM 7271] Length = 250 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 120/246 (48%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y+GWQ Q S+Q ++KA+ + + V GAGRTDSGVHAL+ Sbjct: 1 MRYFIELSFFGKNYYGWQFQPKAISVQEVLQKALSTLLRTPIEVVGAGRTDSGVHALQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ P L LNA+L I++ ++ V HARF A++R+Y Y I T++ Sbjct: 61 AHFDVTEAL-PANLVHKLNAFL--PKDIAVHHIYEVQPNAHARFDALKRTYQYHISTQK- 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A A + L+ M AAQ L DF F H + I + Sbjct: 117 -DAFAYDYAMALTLPLNVALMNEAAQILFDYTDFQCFSKTHTDVKTYNCKIYEAHWDKVE 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L VG K + TD E + ++ R + G P GLY Sbjct: 176 NQLIFTITADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIILSKKRSKAGASVPACGLYL 235 Query: 242 DSVEYS 247 +EY Sbjct: 236 THIEYP 241 >gi|329957112|ref|ZP_08297679.1| tRNA pseudouridine synthase A [Bacteroides clarus YIT 12056] gi|328523380|gb|EGF50479.1| tRNA pseudouridine synthase A [Bacteroides clarus YIT 12056] Length = 251 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 116/248 (46%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R+Y Y + T + Sbjct: 61 VAHFDSEVPLDVTFMADKLNRLL--PPDISVYRLRAVRPDAHARFDATARTYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ + ++ D E M AAQ L DFT+F +H + I H Sbjct: 119 MP--FDRRYRCRLFQTPDFERMNEAAQTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQV 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ +DR G P L Sbjct: 177 DEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTIEGFRRVIEQKDRCRAGTSVPGNAL 236 Query: 240 YFDSVEYS 247 + + Y Sbjct: 237 FLVDIAYP 244 >gi|302553571|ref|ZP_07305913.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM 40736] gi|302471189|gb|EFL34282.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM 40736] Length = 284 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 117/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSKETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL RE K L ++ + + L F+ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPREVWAEHHQKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVT 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L + LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 130 DNPGGVDPLLRNHVLWHDWPLDVDAMNEAARRLLGEHDFAAYCKKR-EGATTIRTLQELS 188 Query: 177 -VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V +I V A +F H +RS +G+L VGDG K L A R + Sbjct: 189 LVKGEDGIITATVRADAFCHNMVRSLIGALLFVGDGHRPPDWPGKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|254383143|ref|ZP_04998497.1| tRNA pseudouridine synthase A [Streptomyces sp. Mg1] gi|194342042|gb|EDX23008.1| tRNA pseudouridine synthase A [Streptomyces sp. Mg1] Length = 283 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 118/251 (47%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ V + V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRVLRTVQGELESALTTVMRLPDPVELTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA FD+ E K L ++ + + ++ + F+ARFSAI R Y YR+ Sbjct: 70 QVAQFDVAEEVWAEHHDKLLRRLAGRLPHDVRVWKVAEAPQGFNARFSAIWRRYAYRVGD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 Q L +G LD + M AA L+G HDF + + ++ IRT+ Sbjct: 130 HQGGVDPLRRGHVLWHQWPLDVDAMNRAAAALLGEHDFAAYCKKR-EGATTIRTLQQLSW 188 Query: 178 NSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G+ I V A +F H +RS VG+L VGDG + L A R + P Sbjct: 189 ERAGDGIVTATVRADAFCHNMVRSLVGALLHVGDGHRPVEWPGQVLAAGVRDSSVHVVKP 248 Query: 237 EGLYFDSVEYS 247 GL + V Y Sbjct: 249 HGLTLEEVGYP 259 >gi|294506655|ref|YP_003570713.1| tRNA pseudouridine synthase A [Salinibacter ruber M8] gi|294342983|emb|CBH23761.1| tRNA pseudouridine synthase A [Salinibacter ruber M8] Length = 265 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IEY+G+ + GWQ Q ++QG++E+A+ V G V G+GRTD+GVHA Q Sbjct: 1 MPRYRFLIEYDGTDFHGWQIQPTVPTVQGALEEAVDTVVGTACRVAGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL P L +LN D +++ + FHAR+ A RR Y Y + T+ Sbjct: 61 VAHVDLPETRDPYRLRGSLNGL--TPDAVAVRRVERAPDDFHARYDACRRRYHYHLHTQ- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 P AL + + D +R AA L+GRH+F++F + + + T+ H Sbjct: 118 -PCALGRRARTPVRPVPDFGRIRAAAPDLLGRHNFSSFCLTQSETENRVCTLTHLRWVDE 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + VV FLH +R+ VG+L +G K + L L A+DR+ GP PPEG Sbjct: 177 ARRGCWRVEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPEG 236 Query: 239 LYFDSVEYS 247 L ++V Y Sbjct: 237 LVLEAVRYE 245 >gi|86132219|ref|ZP_01050814.1| Pseudouridylate synthase [Dokdonia donghaensis MED134] gi|85817138|gb|EAQ38321.1| Pseudouridylate synthase [Dokdonia donghaensis MED134] Length = 263 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G Y GWQRQ N ++Q +IEKA+ + + V++ GAGRTD+GVHA + Sbjct: 8 VRYFIELSYFGKDYHGWQRQPNAVTVQETIEKALSTILRKPVLIMGAGRTDAGVHATQMY 67 Query: 62 AHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD + + L L + I+I + V + H RF A RSYLYRI R Sbjct: 68 AHFDWDDDLSLDNKLRNLTYKLNRFLPPDIAIDRIFNVRDEAHTRFDATSRSYLYRIAKR 127 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + E+ A I +D M AA L+ DF F + ++ + I Sbjct: 128 KNPFSTEQAHA--IAYDIDLSLMNEAAAALLDYSDFECFSKSKTEVNTYLCDITRAQWLE 185 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L +G GK + + ++ + R G P GL Sbjct: 186 TEDEYHFHITANRFLRNMVRAIVGTLLEIGQGKKPVSWIHDVVKGKSRSRAGSSVPGHGL 245 Query: 240 YFDSVEYS 247 Y + Y Sbjct: 246 YLTEIIYP 253 >gi|190575294|ref|YP_001973139.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia K279a] gi|229558000|sp|B2FNZ6|TRUA_STRMK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190013216|emb|CAQ46850.1| putative tRNA pseudouridine synthase A [Stenotrophomonas maltophilia K279a] Length = 256 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E+A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLEQALSSVADTPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P L ++ +I++ V FHARFSA R Y YR++ R+ Sbjct: 61 VVHFDTDVVRDPRAWM--LGTTTRLPRSIAVRWCVPVADDFHARFSARARRYRYRLLNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL++ ++LD M A Q L+G +DF+ FRS+ CQA R + V+ Sbjct: 119 VRPALDRQTLSWERRALDETLMHAAGQALIGENDFSAFRSVQCQALHARRELQSLQVSRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 GEVIEVAVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAPPQGLV 238 Query: 241 FDSVEYS 247 F Y Sbjct: 239 FLGPLYP 245 >gi|289547965|ref|YP_003472953.1| tRNA pseudouridine synthase A [Thermocrinis albus DSM 14484] gi|289181582|gb|ADC88826.1| tRNA pseudouridine synthase A [Thermocrinis albus DSM 14484] Length = 241 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +I+ + G+ + GWQ Q + ++QG + + + + G RTD+GVHA Sbjct: 1 MFNYGLILSFVGTHFHGWQIQPSLRTVQGELSSCLSKIFDRTIKPIGCCRTDAGVHAKEY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F P L KALN+ L I + + + ++++++R+S ++Y+YRI Sbjct: 61 AANFKAPTFIEPDKLLKALNSLL--PHDIGVKKVWLAEEKWNSRYSIKGKTYVYRIHMSH 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + W IP +L + MR +Q LVG HDF+ F +PI ++ + Sbjct: 119 ARDPFLEPFVWRIPYTLQVDKMREISQLLVGTHDFSGFSKKEDD-KNPIIDLEELVLLQE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ + AR FL +R VG+L VG K ++E+ L ++ C AP +GL Sbjct: 178 GDILILSFRARRFLRYMVRRMVGALVQVGLEKIGKEEIERYLSGEN---CPYTAPAKGLT 234 Query: 241 FDSVEYS 247 + + +S Sbjct: 235 LEKIHFS 241 >gi|319901295|ref|YP_004161023.1| tRNA pseudouridine synthase A [Bacteroides helcogenes P 36-108] gi|319416326|gb|ADV43437.1| tRNA pseudouridine synthase A [Bacteroides helcogenes P 36-108] Length = 250 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 115/248 (46%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGESVQECLMKALATLLRCDVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSAAPLDAAFMVDKLNRLL--PPDISVYRLRAVKSDAHARFDATTRMYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ + ++ D E M AAQ L DFT+F +H + I H Sbjct: 119 IP--FDRWYRCRLFQTPDFERMNEAAQTLYDYTDFTSFSKLHTDVKTNNCKIMHAVWTQQ 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G P L Sbjct: 177 DEVTWVFTIKADRFLRNMVRAIVGTLLEVGRGKLTVEGFRRVIEQQDRCQAGTSVPGNAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVSYP 244 >gi|122919612|pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 gi|122919613|pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 124/252 (49%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ + ++QG +E+A+ + G + AGRTD+GVHAL Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D+ + +ALN L + + ++ V FHAR A+ R+Y YRI+ R Sbjct: 60 MPFHVDVESAIPVEKVPEALNRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 P L + RA + + LD E M A L+GRH+F F + R + + Sbjct: 118 PHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGE--RELLEARLQV 175 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G + + +SFL Q+R VG+L VG GK L+ L+ DR+ GP AP Sbjct: 176 AEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAP 235 Query: 236 PEGLYFDSVEYS 247 GLYF Y Sbjct: 236 AHGLYFVEAAYP 247 >gi|331090989|ref|ZP_08339831.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330405211|gb|EGG84747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 248 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+GS Y GWQR ++ ++I I + I +T E V + RT+ GVHA Sbjct: 1 MRNIKLTLEYDGSRYQGWQRLGKNESSNTIANKIIEVIKKMTNEDVELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ +F + + + LN YL I++ ++ ++FHA +A + Y+YR+ Sbjct: 61 YAQIVNFKTTSDMKLGEIKQYLNRYL--PMDIAVTDIEEKPERFHASLNATSKIYMYRMA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P E+ + + K D + M+ AA LVG+HDF F ++ ++ S ++ I D+ Sbjct: 119 IGEVPSVFERKYTYYVFKKPDVDVMKQAALLLVGKHDFKNFSTVK-KSKSTVKEIYDIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I+I + A FLH R +G+L +G G ++E + + + Sbjct: 178 YTDDEEIQITLHANDFLHNMARMVIGTLIDIGLGNRKKEEIEDIFNPESSVQASSPCDAK 237 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 238 GLYLQEVLYE 247 >gi|71083164|ref|YP_265883.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1062] gi|123734383|sp|Q4FNF9|TRUA_PELUB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71062277|gb|AAZ21280.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1062] Length = 246 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 103/247 (41%), Positives = 146/247 (59%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY G+ + GWQ Q G SIQ I+ + E VV+ G+GRTD+GVHA+ Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD +E L K++N ++ IS+L + +FHAR SA +R Y Y I R Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHFIN-DKGISVLAIKKRSLKFHARHSAKQRIYKYIIFNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + +LEK R W I K LD E M+ ++ L+G DF+TFR+ C A SPI+T+ ++ S Sbjct: 120 LSKPSLEKERGWHIIKKLDIELMKKGSKKLLGTKDFSTFRASSCNAKSPIKTMKSVNIKS 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 IEI+ ++SFL Q+RS VGSLK + + KW E ++++ R C P AP EGL Sbjct: 180 KDGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGL 239 Query: 240 YFDSVEY 246 + + V Y Sbjct: 240 FLEKVIY 246 >gi|317051440|ref|YP_004112556.1| tRNA pseudouridine synthase A [Desulfurispirillum indicum S5] gi|316946524|gb|ADU66000.1| tRNA pseudouridine synthase A [Desulfurispirillum indicum S5] Length = 263 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ Y GWQ Q+N ++IQ +E A V + +HG+GRTD+GVHA Q Sbjct: 8 RRIALKVAYDGTHYHGWQTQENAANTIQAILEHAAGSVCNHPLYIHGSGRTDTGVHARGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + H + +N+ L I + N VD+ FH+++S + Y Y I+ Sbjct: 68 ICHLTTTSTIPLFKIIMGMNSML--PRDIRVRNAFDVDEDFHSQYSTHSKKYSYAILHGC 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 P L++ +W + +++D ++ H VG HDF R+ + +RTI V Sbjct: 126 QPDPLQRLYSWHVRQTIDPARLQEELNHFVGEHDFKACRAKKATTKTTVRTIYSIGVRVE 185 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + I FL IR VG+ G + + + L ++DR G A P GL Sbjct: 186 SPHKLHIHFHGNGFLKHMIRIMVGTAVDRAIGCLDRS-IPEILLSRDRTRGGRTAAPCGL 244 Query: 240 YFDSVEYS 247 + V Y Sbjct: 245 VMEEVLYE 252 >gi|225849320|ref|YP_002729484.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium azorense Az-Fu1] gi|225643913|gb|ACN98963.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium azorense Az-Fu1] Length = 244 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 88/244 (36%), Positives = 120/244 (49%), Gaps = 5/244 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y G+ Y GWQRQKN IQ IE + + E + + G+GRTD+GVHAL QVA Sbjct: 6 NYKLTISYIGTRYSGWQRQKNAVGIQQIIEDLLEKLFKEKITLIGSGRTDAGVHALNQVA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F P + LNA L IS+ + VD F+ARFSA ++YLYRI T+ P Sbjct: 66 NFKTYSYKDPSTIYSYLNAKL--PRDISVKKVEEVDLNFNARFSAKGKTYLYRIYTK--P 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 GR W K LD M + L D T+ + + + G Sbjct: 122 DPFLYGRGWFFDKDLDIVKMLQGIEILKKYKDLTSLAKEGNYIRKEV-DLREIKLYYDGK 180 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I+I + A FL +R VG L +G G + + E ++A+D + LAPPEGLY Sbjct: 181 IIDIEITASHFLRNLVRRIVGHLVAIGRGSLSLQEFEDIIKAKDSSKGKFLAPPEGLYLK 240 Query: 243 SVEY 246 V Y Sbjct: 241 EVYY 244 >gi|317501544|ref|ZP_07959740.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088594|ref|ZP_08337505.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] gi|316897055|gb|EFV19130.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407551|gb|EGG87051.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] Length = 260 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 120/263 (45%), Gaps = 19/263 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ + +IQG +E+ + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + + +N L I IL++ +V FHAR SA+ + Y YRI T Sbjct: 61 QTASVVLPGKVDTALFTEKMNGCL--PPDIRILDVELVKNGFHARKSAVGKVYEYRIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P D MR AA +L G H F + S RTI + Sbjct: 119 IKQDVFTRKYSGHFPGEPDLARMREAAGYLTGTHFFAGYTDKK-DNRSVRRTIYSIMIRD 177 Query: 180 F---------------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 GN I IR FL+ +R G+L VG + T+ +++AL Sbjct: 178 ERKDFLPCGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLT 237 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 DR + G LAP GL+ V Y Sbjct: 238 GDRSKAGFLAPAGGLFLREVRYE 260 >gi|258647412|ref|ZP_05734881.1| tRNA pseudouridine synthase A [Prevotella tannerae ATCC 51259] gi|260852780|gb|EEX72649.1| tRNA pseudouridine synthase A [Prevotella tannerae ATCC 51259] Length = 256 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G Y GWQ+Q N S+Q + KAI + + + GAGRTD+ V+A R V Sbjct: 1 MRYFLYFSYDGGNYHGWQQQPNAISVQEVLNKAISTLLQSAISLVGAGRTDTSVNAKRMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +P LN L I++L++ V+K HARF A+ R+Y Y I + Sbjct: 61 AHFDF-CCTLPDKFTFRLNRLL--PPDIAVLDIKQVNKDAHARFDALSRTYHYYIY--KK 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSF 180 ++ A LD M AA+ L+ DFT+F +H + I + + Sbjct: 116 KDPFKRHYATRYLAELDYTAMNQAAKLLLQVEDFTSFSKLHTDTRTKICHVTKAEWIQEK 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L + A FL +R+ VG+L VG G+ + + K +Q ++R P E L+ Sbjct: 176 EDLWRFEITADRFLRNMVRAIVGTLIEVGRGRMSIEEFSKVIQQKNRCAAAESVPGEALF 235 Query: 241 FDSVEYS 247 +++Y Sbjct: 236 LVNIKYP 242 >gi|326335636|ref|ZP_08201823.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692402|gb|EGD34354.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 247 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG YFGWQ+Q + S+Q +E+AI L+ E + + GAGRTD+GVHA Sbjct: 1 MRFFIELSYNGKNYFGWQKQPHSLSVQEELERAISLLLHEEITLVGAGRTDTGVHARDYF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +P L LN++L TI+I + + HARF AI R+Y Y I + Sbjct: 61 AHFDF-SLPLPENLVNKLNSFL--PKTIAIKGIFPMKDAAHARFDAISRTYQYFISREKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ ++ + + L M A + L+ +DF F + + I + Sbjct: 118 PFLYEQ--SYYVYQPLAISQMNRACEILLKHNDFQCFSKTNTDVRTYICHLTEAFWKEED 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ R+ A FL +R+ VG++ VG GK + ++ E+ L +++R + G P L+ Sbjct: 176 SLLIFRITADRFLRNMVRAIVGTMIEVGIGKISLSNFEQILLSKNRSQAGYSVPGHALFL 235 Query: 242 DSVEYS 247 + V Y Sbjct: 236 EKVVYP 241 >gi|213962633|ref|ZP_03390894.1| tRNA pseudouridine synthase A [Capnocytophaga sputigena Capno] gi|213954628|gb|EEB65949.1| tRNA pseudouridine synthase A [Capnocytophaga sputigena Capno] Length = 250 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y GWQ Q S+Q +E+ + + + V GAGRTDSGVHA + Sbjct: 1 MRYFIELSFFGKNYHGWQSQPKAISVQEVLEQGLSTILRTPISVVGAGRTDSGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ P LNA+L I++ N+ + H RF A++R+Y Y I T++ Sbjct: 61 AHFDVTEPL-PTNFVHRLNAFL--PKDIAVHNIYEMKPNAHTRFDALKRTYQYHISTQK- 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A +L+ M AAQ L+ DF F H + I I Sbjct: 117 -DVFAYDYAMFFTHTLNIAIMNEAAQILLDYSDFQCFSKTHTDVKTFICKIYKAHWEKID 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++A FL +R+ VG+L VG K + TD E + +++R + G P GL+ Sbjct: 176 KQLVFTIIADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIILSKNRSKAGASVPACGLFL 235 Query: 242 DSVEYS 247 +EY Sbjct: 236 THIEYP 241 >gi|315223896|ref|ZP_07865742.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea F0287] gi|314946125|gb|EFS98128.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea F0287] Length = 262 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 118/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y+GWQ Q S+Q ++KA+ + + V GAGRTDSGVHA + Sbjct: 13 MRYFIELSFFGKNYYGWQSQPKAISVQEVLQKALSTLLRTPIEVVGAGRTDSGVHASQMY 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ P L LNA+L I+I ++ V HARF A++R+Y Y I TR+ Sbjct: 73 AHFDVTEAL-PANLVHKLNAFL--PKDIAIHHIYEVQPNAHARFDALKRTYQYHISTRK- 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A A L+ M AA+ L DF F H + I + Sbjct: 129 -DAFAYDYAMAFTLPLNVALMNEAAEILFDYTDFQCFSKTHTDVKTYNCKIYEAHWDKVE 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L VG K + TD E + ++ R + G P GLY Sbjct: 188 NQLIFTITADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIIISKKRSKAGASVPACGLYL 247 Query: 242 DSVEYS 247 +EY Sbjct: 248 THIEYP 253 >gi|224538364|ref|ZP_03678903.1| hypothetical protein BACCELL_03255 [Bacteroides cellulosilyticus DSM 14838] gi|224519993|gb|EEF89098.1| hypothetical protein BACCELL_03255 [Bacteroides cellulosilyticus DSM 14838] Length = 279 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 115/248 (46%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + +A+ + V V GAGRTD+GVHA Sbjct: 29 MQRYFIYLAYDGTAYHGWQIQPNGDSVQECLMRALATLMRREVEVIGAGRTDAGVHASLM 88 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN L IS+ L V HARF A R Y Y + T + Sbjct: 89 VAHFDSDEPLDTAFFTDKLNRLL--PPDISVYRLRAVKPDAHARFDATARMYKYYVTTAK 146 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + ++ D E M AA+ L DFT+F +H + I H Sbjct: 147 SP--FNRQYRCRLFQTPDFERMNEAARSLFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQI 204 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL +R+ VG+L VG GK T + ++ +DR + G P L Sbjct: 205 DDVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVDGFRRVIEQKDRCKAGTSVPGNAL 264 Query: 240 YFDSVEYS 247 + V Y Sbjct: 265 FLVDVTYP 272 >gi|153815016|ref|ZP_01967684.1| hypothetical protein RUMTOR_01233 [Ruminococcus torques ATCC 27756] gi|145847584|gb|EDK24502.1| hypothetical protein RUMTOR_01233 [Ruminococcus torques ATCC 27756] Length = 260 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 120/263 (45%), Gaps = 19/263 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ + +IQG +E+ + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + + +N L I IL++ +V FHAR SA+ + Y YRI T Sbjct: 61 QTASVVLPGKVDTALFTEKMNGCL--PPDIRILDVELVKNGFHARKSAVGKVYEYRIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P D MR AA +L G H F + S RTI + Sbjct: 119 IKQDVFTRKYSGHFPGEPDLARMREAAGYLTGTHFFAEYTDKK-DNRSVRRTIYSIMIRD 177 Query: 180 F---------------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 GN I IR FL+ +R G+L VG + T+ +++AL Sbjct: 178 ERKDFLPCGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLT 237 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 DR + G LAP GL+ V Y Sbjct: 238 GDRSKAGFLAPAGGLFLREVRYE 260 >gi|296111462|ref|YP_003621844.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154] gi|295832994|gb|ADG40875.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154] Length = 256 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 129/257 (50%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTD 52 M RY I+ Y+GSG+FG+Q Q + ++QG + KA+ + E + V GA RTD Sbjct: 1 MPRYKAIVSYDGSGFFGFQVQTKNGIERQRTVQGELTKAVNQMAKNPTEPIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + + K LN L + I + V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFDINENGVRKGLNTLL--PRDMLIKQVDKVTPDFHARFNTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T+ ++ LD E ++ A L+G HDF +F + Q ++ IRTI Sbjct: 119 IYRVSTQDFTDPFKRQYTGHFQWHLDIERIKSALPDLLGEHDFASFAASGNQTATTIRTI 178 Query: 173 DHFDVN--SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 DV + +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 179 TRADVTIKPDDQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDILRLITVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D + Y+ Sbjct: 239 RFTAPASGLYLDQIYYN 255 >gi|91762406|ref|ZP_01264371.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1002] gi|91718208|gb|EAS84858.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1002] Length = 246 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 103/247 (41%), Positives = 144/247 (58%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY G+ + GWQ Q G SIQ I+ + E VV+ G+GRTD+GVHA+ Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD +E L K++N ++ IS+L + +FHAR SA +R Y Y I R Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHFIN-DKGISVLAIKKRSLKFHARHSAKQRIYKYIIFNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + +LEK R W I K LD E M+ A+ L+G DF+TFR+ C A S I+T+ + S Sbjct: 120 LSKPSLEKERGWHIIKKLDIELMKKGAKKLLGTKDFSTFRASSCNAKSSIKTMKSVKIKS 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 IEI+ ++SFL Q+RS VGSLK + + KW E ++++ R C P AP EGL Sbjct: 180 KDGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGL 239 Query: 240 YFDSVEY 246 + + V Y Sbjct: 240 FLEKVIY 246 >gi|315656237|ref|ZP_07909128.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493239|gb|EFU82839.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 297 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 131/273 (47%), Gaps = 28/273 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA QV Sbjct: 1 MRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQV 60 Query: 62 AHFDLV----REWVPVILCKALNAYL------------------KISDTI---SILNLSI 96 AHF + R P L L A L + I + ++ Sbjct: 61 AHFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATV 120 Query: 97 VDKQFHARFSAIRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V + F ARFSA+ R Y+YRI+ A L + W P LD M +A L+G HDF Sbjct: 121 VPETFDARFSALARHYVYRIVDDLAARNPLSRNYCWWYPTQLDAAAMNTSAAVLLGEHDF 180 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F + ++ IRT+ + ++EIRV A +F H+ +RS VG+L VG K Sbjct: 181 AAFCKPR-EGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRD 239 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L AL A+ R P+AP GL V+Y Sbjct: 240 TAWLADALAAKARIPEIPVAPALGLTLTQVDYP 272 >gi|312140887|ref|YP_004008223.1| tRNA pseudouridine synthase a [Rhodococcus equi 103S] gi|311890226|emb|CBH49544.1| tRNA pseudouridine synthase A [Rhodococcus equi 103S] Length = 274 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 3/245 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I Y+G+ + GW RQ ++ G +E+ + + V++ AGRTD+GVHA QVAH Sbjct: 2 RLDISYDGTDFSGWARQPGRRTVCGEVEEKLSAIVRTPVLLTVAGRTDAGVHASGQVAHV 61 Query: 65 DLVREWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D+ + +P + + + + + +S + F ARFSAIRR Y YR+ T Sbjct: 62 DVPADMIPEEPSRLVRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRHYEYRLTTAPYGA 121 Query: 124 -ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L PK +D + MR A+ L+G HDF F + ++ +R + FD G+ Sbjct: 122 EPLRARDTVAWPKDVDVDAMREASSRLLGLHDFAAFCKRR-EGATTVRELQRFDWEQSGH 180 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + V A +F + +RS VG+ VG+G+ T + L ++R +AP GL Sbjct: 181 ELTAFVSADAFCWSMVRSLVGAALAVGEGRRTVEWMAGLLAERERASAVAVAPAHGLSLI 240 Query: 243 SVEYS 247 V+Y Sbjct: 241 RVDYP 245 >gi|33241136|ref|NP_876078.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|42559767|sp|Q7V9Y7|TRUA_PROMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33238666|gb|AAQ00731.1| Pseudouridylate synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 289 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 113/246 (45%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y GS + GWQRQK G +IQ +E AIF + + + V AGRTD+GVHA QV Sbjct: 17 RIALSIQYQGSNFSGWQRQKVGHTIQAILEDAIFSLDSSKPAKVVAAGRTDAGVHAAGQV 76 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ALN L + I + + +HA SA+ R Y Y I Sbjct: 77 VHFDSFGPIPVHRWPSALNGRL--PEAIRVRDSVEQSLDWHACHSAVYRRYRYIIYNGCT 134 Query: 122 PLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W LD E M AA+ L+G HDF+ F+ + TI + Sbjct: 135 PNLFLNPWTWHKYQYQLDEELMEEAAKGLIGMHDFSAFQRSGSNRTHAFTTIQEVKLVRH 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ + A FL+ +R VG L +G+ + + D E + + R E AP GL Sbjct: 195 GDLLVFDIQASGFLYGMVRLLVGQLVSIGEHRLSINDFETRWKLKLRSEVKEAAPARGLC 254 Query: 241 FDSVEY 246 F Y Sbjct: 255 FIRAGY 260 >gi|262341374|ref|YP_003284229.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272711|gb|ACY40619.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 247 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 132/247 (53%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG ++GWQ QK S+++G++E + + E + V GAGRTD GVHA + Sbjct: 1 MRFFIELAYNGKYFYGWQVQKKVSTVEGNLEYCLSKLLKESINVIGAGRTDKGVHAKQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + L K LN +L +I +LN+ V + HARF+AI+R Y Y ++ + Sbjct: 61 AHFDYKGKIS-NNLIKKLNVFL--PKSIKVLNIFPVKENIHARFNAIKRIYKYYLVRDKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSF 180 P + +W L+ + M IA++ L+G DF++F + + I ++H + Sbjct: 118 P--FYQDFSWHCFYPLNIQRMNIASKKLMGHKDFSSFCKKKTFETRNNICKVNHVCWSVN 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+ + A FL + +RS +G+L VG K + + + +++++ C + P GL+ Sbjct: 176 NNVFCFTIEANRFLRSMVRSIIGTLIDVGRNKISVNEFSEIIESKNSNFCKSIVPACGLF 235 Query: 241 FDSVEYS 247 + Y Sbjct: 236 LTRILYP 242 >gi|218296263|ref|ZP_03497019.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23] gi|218243335|gb|EED09865.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23] Length = 259 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 125/252 (49%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ+ G ++QG +EKA+ + G + AGRTD+GVHAL Sbjct: 1 MRRILLLTEYDGTHFAGLQRQRQGLRTVQGELEKALPHI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H DL P + +ALN L + + ++ V FHAR A+ R+Y YR++ R Sbjct: 60 MPFHIDLQSPIPPEKVPEALNRLL--PEDLKVVAAREVAPDFHARKDALWRAYRYRVLLR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 P L + R + + LD + M A L+GRH+F F + +R + + Sbjct: 118 PHPSPLLRHRVLWLRRPLDLKAMEEALPLLLGRHNFLGFAKEETREG--VRELLEARLEV 175 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G + RSFL Q+R VG+L VG G+ + ++ L+ DR+ G AP Sbjct: 176 LEGEMGPEVRFYFKGRSFLRGQVRGMVGTLLEVGLGRRSPESVKAILETADRRLAGQSAP 235 Query: 236 PEGLYFDSVEYS 247 GLYF Y Sbjct: 236 ATGLYFLEAAYP 247 >gi|302543331|ref|ZP_07295673.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus ATCC 53653] gi|302460949|gb|EFL24042.1| tRNA pseudouridine synthase A [Streptomyces himastatinicus ATCC 53653] Length = 283 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 115/251 (45%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRERRTVQGELESALGTVTRSSETPDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL E K L ++ + + ++ F+ARFSAI R Y YR++ Sbjct: 70 QVAHVDLPEELWAEHRDKLLRRLAGRLPHDVRVWRVAAAPPGFNARFSAIWRRYAYRVVD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G LD + M A+ L+G HDF + ++ IRT+ Sbjct: 130 HPGGVDPLLRGHVLWHDWPLDVDAMNAASAPLLGEHDFAAYCKRR-DGATTIRTLQKLSW 188 Query: 178 NSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +I V A +F H +RS VG+L GDG K L A R + P Sbjct: 189 ERGADGVITATVRADAFCHNMVRSLVGALLFTGDGHRPVDWPGKVLAAGVRDSAVHVVRP 248 Query: 237 EGLYFDSVEYS 247 GL + V Y Sbjct: 249 HGLTLEEVGYP 259 >gi|261749109|ref|YP_003256794.1| putative tRNA pseudouridine synthase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497201|gb|ACX83651.1| putative tRNA pseudouridine synthase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 247 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG Y GWQ Q +S++G +E + + + + GAGRTD GVHA + Sbjct: 1 MRFFIELSYNGKSYHGWQIQSEVNSVEGQLEYCLSKLLNTSINIVGAGRTDRGVHAKQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + K LN L + +I + N+ V K HARF+A+RR+Y Y + + + Sbjct: 61 AHFDFEEKIS-NNFVKRLN--LFLPKSIYVSNIFPVKKHIHARFNALRRTYKYYLKSEKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +W LD + M +A+Q L+ DF++F + I I H D + Sbjct: 118 P--FFQDFSWHCFYPLDIQRMNLASQILMKYKDFSSFCKKRKDKKNNICDIYHADWSRNK 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLY 240 + A FL +RS +G+L VG GK + + ++ ++ C P P GL+ Sbjct: 176 IHFCFTIEANRFLRNMVRSIIGTLIDVGRGKISINQFIEIIELKNPNTCSSPSVPACGLF 235 Query: 241 FDSVEYS 247 + Y Sbjct: 236 LTKILYP 242 >gi|6729002|gb|AAF26999.1|AC016827_10 putative tRNA pseudouridine synthase [Arabidopsis thaliana] Length = 298 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 17 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWG 76 Query: 60 QVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 77 QVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSASSKVYRYQIYN 134 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHFD 176 ++ A+ L+ MR AA VG+HDF+ F + + P++TI FD Sbjct: 135 DTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFD 194 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---- 232 V G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 195 VIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSL 254 Query: 233 LAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 255 PASPHGLCLVSVKY 268 >gi|258406231|ref|YP_003198973.1| tRNA pseudouridine synthase A [Desulfohalobium retbaense DSM 5692] gi|257798458|gb|ACV69395.1| tRNA pseudouridine synthase A [Desulfohalobium retbaense DSM 5692] Length = 254 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 121/248 (48%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y G+ + GWQ Q ++QG +E A + + VHGAGRTDSGVHA+ Q Sbjct: 1 MPRLKLVVAYTGTHFAGWQLQPRDRTVQGCLEDAFATLCQHPLRVHGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D+ E + KALNA L I++ + V FHARFSA + Y Y I T Sbjct: 61 VCHCDIPPEKNHIPWQKALNAIL--PKDIAVCEAAYVRDDFHARFSAQAKEYAYTIWTEP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ +D M +AA+ L G DF F++ S +RT+ H Sbjct: 119 RYVLPQRRPLVWSVGRVDEHKMAVAARMLTGTFDFAAFQNTGTPVSHTVRTVYHLAPEPG 178 Query: 181 --GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN A FL +R+ +G L VG K + +++ L+ Q R+ APP+G Sbjct: 179 AAGNESTWLFHADGFLKQMVRNIMGCLVAVGRNKISVDEVKILLEGQKREMAPATAPPQG 238 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 239 LCLRKVKY 246 >gi|297568336|ref|YP_003689680.1| tRNA pseudouridine synthase A [Desulfurivibrio alkaliphilus AHT2] gi|296924251|gb|ADH85061.1| tRNA pseudouridine synthase A [Desulfurivibrio alkaliphilus AHT2] Length = 252 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 113/255 (44%), Gaps = 12/255 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ + I Y+G+ + GWQRQ N +IQ +E+A+ + GE VV+HGAGRTD+GVHAL Sbjct: 1 MVKVKLTIAYDGTDFAGWQRQLNRPTIQAVVEEALARMLGEQVVLHGAGRTDAGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F+ R LN+ L I I+ FHARFSA + Y Y T Sbjct: 61 VASFNAPRRLPLAAYRLGLNSML--PPAIRIMAADEAADDFHARFSAKGKLYRYCFSTAA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT--------- 171 + +P E +R ++G HDF+TF + + Sbjct: 119 VMPPCRRLYRAHLPGPFAAERVRQLLPQMLGEHDFSTFEAAGSRDRDRAGGRGGVRRLNL 178 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + G + FL +R+ VG+L +G G+ + L +DR G Sbjct: 179 LQLEQEDPAGQEFCFELGGDGFLRHMVRNIVGTLVAIGQGR-PLAEPVALLVGRDRARAG 237 Query: 232 PLAPPEGLYFDSVEY 246 P AP GL V Y Sbjct: 238 PTAPACGLTLVKVIY 252 >gi|15606137|ref|NP_213514.1| pseudouridine synthase I [Aquifex aeolicus VF5] gi|3929394|sp|O66953|TRUA_AQUAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2983318|gb|AAC06908.1| pseudouridine synthase I [Aquifex aeolicus VF5] Length = 241 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 5/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + + G+ ++GWQ Q N ++QG I+KA+ + E V V G RTDSGVHAL Sbjct: 1 MPNYLLRLAFVGTNFYGWQVQPNLRTVQGEIQKALSQILCEDVKVTGCCRTDSGVHALDY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F +++ L KALN L + + + V ++F+AR+S + YLY+I + Sbjct: 61 IANFKTQKDFPEEKLLKALNGIL--PKDVGVYAVKKVSEEFNARYSVKGKVYLYKIWNSE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +W + + ++ E +R + G HDF + + + + ++ +N Sbjct: 119 VRNPFLYPFSWQVKREINTEVLRNILKKFEGTHDFRALTKLE-EERNTVINLEEVSLNVE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LIEIR+ A FL +R VG+ + G ++ LE+ LQ + APP+GL+ Sbjct: 178 YPLIEIRLKASHFLRYMVRRIVGTAVKISLGLYSEEVLEELLQGK--GNSPYTAPPQGLH 235 Query: 241 FDSV 244 + V Sbjct: 236 LEKV 239 >gi|330444180|ref|YP_004377166.1| tRNA pseudouridine synthase A [Chlamydophila pecorum E58] gi|328807290|gb|AEB41463.1| tRNA pseudouridine synthase A [Chlamydophila pecorum E58] Length = 267 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ +IQ +E + V + +GRTDSGVHA Q Sbjct: 1 MKKIVLLLAYQGTAYAGWQRQPQHLTIQEVLETLFMPILHSRVPMVASGRTDSGVHAYGQ 60 Query: 61 VAHFDLVREW---VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V HF L P L K LNA L I + ++++ D FHAR+ AI + Y Y + Sbjct: 61 VVHFSLPDHPLTSDPCKLKKLLNARL--PKDIVVRDIALTDASFHARYCAIAKEYHYTLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ ++ P + + M AQ+L+G HDF +F ++ + +S IRT+ + Sbjct: 119 KNIKPLPWQRNFSYSPPHRIRADLMHQGAQYLIGTHDFASFANLGREYTSTIRTLYKVAI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ +R+ VG+L + G + + L+ ++R++ P AP Sbjct: 179 EETEHTLTLIFKGNGFLYKMVRNLVGALLDINKGAYPPEHILNMLKEKNRRKGPPSAPAH 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLHHVCY 247 >gi|218132910|ref|ZP_03461714.1| hypothetical protein BACPEC_00771 [Bacteroides pectinophilus ATCC 43243] gi|217991783|gb|EEC57787.1| hypothetical protein BACPEC_00771 [Bacteroides pectinophilus ATCC 43243] Length = 256 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+GS Y GWQR + ++I+ + AI TGE + G+GRTD+GVHAL Sbjct: 1 MNNYRLTIQYDGSRYNGWQRLNDTDNTIEQILTDAIIKSTGEKTKLIGSGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A+F + + + LN+ L + I + V FH+R SA + Y+YRI Sbjct: 61 QTANFRCRQRLDEMHFTEELNSML--PEDIRVNLTKRVPPDFHSRHSATGKYYVYRIEIS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + + +W D + M AAQ ++G HDF F + ++T+ ++ Sbjct: 119 EPANPFRRRYSWKPDGIPDVKLMCEAAQRMIGEHDFKAFCTDAKLMPYTVKTVYDINIHK 178 Query: 178 -------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +IE+ FL+ +R G++ G G+++ D++ L R Sbjct: 179 DYSCLWNREEPGIIELEFHGSGFLYNMVRIMAGTIVDAGLGRFSPADIDAMLNGGTRSMS 238 Query: 231 GPLAPPEGLYFDSVEYS 247 G LAP GL+ EYS Sbjct: 239 GQLAPARGLFLKKAEYS 255 >gi|332702220|ref|ZP_08422308.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis Bay] gi|332552369|gb|EGJ49413.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis Bay] Length = 266 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 119/250 (47%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ + G Q Q ++QG +E + + V + A RTDSGVHAL Q Sbjct: 1 MPRLKLTLAYTGTRFAGLQIQPGCRTVQGEVEAVLARMLNGPVRIDMAARTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 V H D+ + + KA+NA L D + + + +V +FH+RFSA + Y Y I + Sbjct: 61 VVHLDVPESKMRIPWRKAINALL--PDDVCVTEVEVVPPEFHSRFSATSKVYAYTIWSEL 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L K W + L+ M A QH VGRHDF +F+++ RT+ F Sbjct: 119 EFILPQRKPFVWRMAG-LNQTAMDKAMQHFVGRHDFKSFQNVGTPIRDTRRTVARFWREP 177 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E R+ A FL +R+ +G L VG GK D+ + +DR P AP Sbjct: 178 GQTQWETVYRIQADGFLKQMVRNIIGCLVAVGRGKLCPNDIPALIAVRDRSLAPPTAPSR 237 Query: 238 GLYFDSVEYS 247 GL + + + Sbjct: 238 GLCLERIFFD 247 >gi|323345677|ref|ZP_08085900.1| tRNA pseudouridine synthase A [Prevotella oralis ATCC 33269] gi|323093791|gb|EFZ36369.1| tRNA pseudouridine synthase A [Prevotella oralis ATCC 33269] Length = 243 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+S+Q ++ A+ ++ + V V GAGRTD+GVHA Sbjct: 1 MQRYFVYFAYDGTAYHGWQVQPNGNSVQVELQNALSVLLRQPVEVVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD V L LN L IS+ + VD HARFSA+ R+Y Y + R+ Sbjct: 61 AAHFDFDTPVDEVQLAYKLNRLL--PKDISVDRVVAVDSSMHARFSAVSRTYHYYVHCRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FDVNS 179 P ++ ++ + LD M AQHL+ DF F H + + + + V Sbjct: 119 NP--FKRAYSYELHYQLDFRAMNEVAQHLLQVEDFGAFCKSHNDSKTTLCRVTRALWVQD 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG + + + K ++ ++R G P L Sbjct: 177 DADSWHFVITANRFLRNMVRAVVGTLIDVGRHRISKEEFIKIVERRNRTGAGESMPAHAL 236 Query: 240 YFDSVEY 246 + + ++Y Sbjct: 237 FLEDIKY 243 >gi|307328060|ref|ZP_07607241.1| tRNA pseudouridine synthase A [Streptomyces violaceusniger Tu 4113] gi|306886365|gb|EFN17370.1| tRNA pseudouridine synthase A [Streptomyces violaceusniger Tu 4113] Length = 288 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 114/251 (45%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRERRTVQGELESALRTVTRSSETFELTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL W ++ + + ++ F+ARFSAI R Y YR+ Sbjct: 70 QVAHVDLPEALWAEHRDRLLRRLAGRLPHDVRVWKVAQAPPGFNARFSAIWRRYAYRVTD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G LD M A++ L+G HDF + ++ IRT+ D Sbjct: 130 HPGGVDPLLRGHVLWHDWPLDVAAMNAASERLLGEHDFAAYCKKR-DGATTIRTLQRLDW 188 Query: 178 NSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +I V A +F H +RS VG+L VGDG K L A R + P Sbjct: 189 VRGADGVITATVRADAFCHNMVRSLVGALLFVGDGHRPWDWPAKVLAAGVRDSAVHVVRP 248 Query: 237 EGLYFDSVEYS 247 GL + V Y Sbjct: 249 HGLTLEEVGYP 259 >gi|294630922|ref|ZP_06709482.1| tRNA pseudouridine synthase A [Streptomyces sp. e14] gi|292834255|gb|EFF92604.1| tRNA pseudouridine synthase A [Streptomyces sp. e14] Length = 284 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 119/252 (47%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSAFHGWAKQAGGKRTVQGEIEDALRTVTRSQETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL + K L ++ + + L F+ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPEQVWREHHEKLLKRLAGRLPRDVRVWALRPAPSGFNARFSAVWRRYAYRVT 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNEAARRLLGEHDFAAYCKKR-EGATTIRTLQELS 188 Query: 177 VNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + +I V A +F H +RS +G+L VGDG T K L A R + Sbjct: 189 LRRGADGIITATVRADAFCHNMVRSLIGALLFVGDGHRTPDWPGKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|312129758|ref|YP_003997098.1| tRNA pseudouridine synthase a [Leadbetterella byssophila DSM 17132] gi|311906304|gb|ADQ16745.1| tRNA pseudouridine synthase A [Leadbetterella byssophila DSM 17132] Length = 251 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 120/246 (48%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ + GWQ Q ++QG +EKA+ V + + G+ RTD+GVHA +Q Sbjct: 1 MRYFIEISYLGTHFHGWQIQPGADTVQGELEKALSTVLNAPISIMGSSRTDTGVHARQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL +E + + LN +L I+I N + + HARF A R Y+YRI+ + Sbjct: 61 AHVDLPQEIHAGYIQR-LNRFL--PKDITIKNFYPLSDEAHARFDATGRKYIYRILHSK- 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++ + D + M AA+ L D+ +F + ++ TI Sbjct: 117 -DSFQQWICAHYSRRPDVDAMNKAAKILFLHTDYQSFSKVKTDVTTFDCTITEAVWRYVD 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E + A FL +R+ VG+L VG GK + E + A+DR + G EGL Sbjct: 176 ERLEFHISANRFLRGMVRAVVGTLLEVGYGKIGLQEFENIILAKDRTKAGTAVKAEGLTL 235 Query: 242 DSVEYS 247 + V Y Sbjct: 236 ERVYYP 241 >gi|167765202|ref|ZP_02437315.1| hypothetical protein BACSTE_03590 [Bacteroides stercoris ATCC 43183] gi|167696830|gb|EDS13409.1| hypothetical protein BACSTE_03590 [Bacteroides stercoris ATCC 43183] Length = 251 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 116/248 (46%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + LN L IS+ L V HARF A R+Y Y + T + Sbjct: 61 VAHFDSETPLDVIFMMDKLNRLL--PPDISVYRLRAVRPDAHARFDATARTYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + ++ D E M AA+ L DFT+F +H + I H Sbjct: 119 MP--FNRQYRCRLFQTPDFERMNEAARTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQV 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ +DR G P L Sbjct: 177 DEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTIGGFRRVIEQKDRCRAGTSVPGNAL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLVDVAYP 244 >gi|256785794|ref|ZP_05524225.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] Length = 275 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 118/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 1 MRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSRETYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL RE K L ++ + + L F+ARFSA+ R Y YR+ Sbjct: 61 GQVAHVDLPREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVT 120 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 121 DNPGGVDPLLRGHVLWHDWPLDVDAMNAAARGLLGEHDFAAYCKKR-EGATTIRTLQELS 179 Query: 177 VNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I V A +F H +RS +G+L VGDG K L A R + Sbjct: 180 LVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGPEWPAKVLAAGVRDSAVHVVR 239 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 240 PHGLTLEEVGYP 251 >gi|256390175|ref|YP_003111739.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928] gi|256356401|gb|ACU69898.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928] Length = 284 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 74/255 (29%), Positives = 118/255 (46%), Gaps = 10/255 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW Q ++ G + A+ V + V + AGRTD+GVHA QV Sbjct: 10 VRVRLDLAYDGTHFSGWAIQPKRRTVCGELTSALSTVLRQDVTLVVAGRTDAGVHASGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ E + L + + + + F ARF+A+ R Y YR+ Sbjct: 70 AHLDVPLELWAEHEERLLRRLAAVLPGDVRVWSAVPAPVGFDARFAAMGRRYAYRVTDAA 129 Query: 121 A-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L + P++LD M AA L+G HDF +F + ++ IR + + Sbjct: 130 YGPHPLRRNDVTWHPRTLDPALMNEAAAALLGEHDFASFCKKR-EGATTIRCLTRLEWTR 188 Query: 180 FG-------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 L+ V A +F H+ +RS VG+L VG+G+ D + L + R Sbjct: 189 EAPTSLTPVGLLVADVRADAFCHSMVRSLVGALLAVGEGRRPVGDPGRILAEEVRSPEVK 248 Query: 233 LAPPEGLYFDSVEYS 247 +APP+GL + V Y Sbjct: 249 VAPPQGLTLEEVVYP 263 >gi|300088167|ref|YP_003758689.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527900|gb|ADJ26368.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 261 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+G+ Y G Q Q +G+++Q +E A+ +TGE + +H A RTD+GV A QVA Sbjct: 8 KLVLTIEYDGAQYRGSQAQGHGATVQSELETAVARLTGEKIRIHLASRTDAGVSAAEQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + ALN +L I++ + V F R A+ R Y YRI+ + P Sbjct: 68 SFRTSLRLPGRTVADALNHFL--PADIAVKKVFRVPDTFDVRRHAVSREYRYRILNTRIP 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFG 181 L + ++ + LD + A LVG HD F + + + IR I + S G Sbjct: 126 SPLRERHSYRVYGELDIAAIEQAVGKLVGEHDLAAFASKLGRRPGTTIRRILAAGLTSEG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + R+VA+SFL +R+ VG L +G G+ T + EK L A GP AP +GL Sbjct: 186 EELVFRIVAKSFLPHMVRNIVGVLVKIGTGRLTVAEFEKLLSAAVPGSAGPAAPGKGLCL 245 Query: 242 DSVEY 246 V Y Sbjct: 246 IKVNY 250 >gi|329938203|ref|ZP_08287654.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045] gi|329302692|gb|EGG46582.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045] Length = 288 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 119/252 (47%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+G+G+ GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGTGFSGWAKQAGGRRTVQGEIEDALRTVTRSRETFELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL RE K L ++ + + L F ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPREVWAEHHGKLLKRLAGRLPRDVRVWALREAPAGFDARFSAVWRRYAYRVT 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAYCKKR-EGATTIRTLQELS 188 Query: 177 VNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G+ I V A +F H +RS +G+L VGDG K L A R + Sbjct: 189 LARGGDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRAPDWPAKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|254521233|ref|ZP_05133288.1| tRNA pseudouridine synthase A [Stenotrophomonas sp. SKA14] gi|219718824|gb|EED37349.1| tRNA pseudouridine synthase A [Stenotrophomonas sp. SKA14] Length = 256 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLELALSSVADAPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P L ++ +I++ V FHARFSA R Y YR++ R+ Sbjct: 61 VVHFDTDVVRDPRAWM--LGTTTRLPRSIAVRWCVPVADDFHARFSARARRYRYRLLNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + ++LD M A Q L+G +DF+ FRS+ CQA R + V+ Sbjct: 119 VRPALGRQTLSWERRTLDEALMHAAGQALLGENDFSAFRSVQCQALHARRELQSLQVSRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 GEVIEVAVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAPPQGLV 238 Query: 241 FDSVEYS 247 F Y Sbjct: 239 FLGPLYP 245 >gi|295838433|ref|ZP_06825366.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74] gi|197695769|gb|EDY42702.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74] Length = 284 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ ++Q ++E+A+ +VT E + AGRTD+GVHA Sbjct: 1 MRLRLDLSYDGTEFHGWARQPAGRRTVQETLEEALRVVTRAPEPYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH ++ E K L ++ + + ++ + F ARFSAI R Y YR+ Sbjct: 61 GQVAHVEMADEVWAEHGEKLLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVA 120 Query: 118 TRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G + LD + M AA+ L+G HDF + + ++ IR + Sbjct: 121 DQPGGADPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKR-EGATTIREMQRLF 179 Query: 177 VNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + E V A +F H +RS VG+L VGDG + K L A R + Sbjct: 180 WTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVR 239 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 240 PVGLTLEEVGYP 251 >gi|21223110|ref|NP_628889.1| tRNA pseudouridine synthase A [Streptomyces coelicolor A3(2)] gi|289769686|ref|ZP_06529064.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] gi|8134769|sp|O86776|TRUA_STRCO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3449243|emb|CAA20387.1| putative pseudouridylate synthase [Streptomyces coelicolor A3(2)] gi|289699885|gb|EFD67314.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] Length = 284 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 118/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSRETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL RE K L ++ + + L F+ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVT 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNAAARGLLGEHDFAAYCKKR-EGATTIRTLQELS 188 Query: 177 VNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I V A +F H +RS +G+L VGDG K L A R + Sbjct: 189 LVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGPEWPAKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|113476553|ref|YP_722614.1| tRNA pseudouridine synthase A [Trichodesmium erythraeum IMS101] gi|110167601|gb|ABG52141.1| tRNA pseudouridine synthase A [Trichodesmium erythraeum IMS101] Length = 272 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 110/247 (44%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ N ++Q IEK I E V +HGAGRTD+GVHA QV Sbjct: 9 QRVALVIQYQGTHFHGWQRQPNQRTVQEEIEKTIASFINEPVTLHGAGRTDAGVHAAAQV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ LN+ L + I I + +D +H+RF+AI R Y Y I T + Sbjct: 69 AHFDVSGPIPAHKWATILNSRLA--NDILIRGSARIDYAWHSRFTAIWRRYRYTIYTDKQ 126 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W + SLD + ++ A L+G H F+ + Sbjct: 127 PNLFVMPFVWHYYQASLDPQLIQAALNPLIGHHHLAAFQRAGSCRPHSWVDVQEVMCERK 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I V A FL+ +R VG L VG + + Q R AP GL Sbjct: 187 GPFIYIEVQASGFLYGMMRLLVGLLIQVGTEELSLESFTDIWVNQRRDIVKHSAPASGLC 246 Query: 241 FDSVEYS 247 V Y Sbjct: 247 LLRVGYP 253 >gi|298345431|ref|YP_003718118.1| tRNA-pseudouridine synthase I [Mobiluncus curtisii ATCC 43063] gi|304390987|ref|ZP_07372939.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235492|gb|ADI66624.1| tRNA-pseudouridine synthase I [Mobiluncus curtisii ATCC 43063] gi|304325870|gb|EFL93116.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 297 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 131/273 (47%), Gaps = 28/273 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA QV Sbjct: 1 MRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQV 60 Query: 62 AHFDLV----REWVPVILCKALNAYL------------------KISDTI---SILNLSI 96 AHF + R P L L A L + I + ++ Sbjct: 61 AHFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATV 120 Query: 97 VDKQFHARFSAIRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V + F ARFSA+ R Y+YRI+ A L + W P LD M +A L+G HDF Sbjct: 121 VPETFDARFSALARHYVYRIVDDLAARNPLSRNCCWWYPTQLDAAAMNTSAAVLLGEHDF 180 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F + ++ IRT+ + ++EIRV A +F H+ +RS VG+L VG K Sbjct: 181 AAFCKPR-EGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRD 239 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L AL A+ R P+AP GL V+Y Sbjct: 240 TAWLADALAAKARIPEIPVAPALGLTLTQVDYP 272 >gi|57234742|ref|YP_181248.1| tRNA pseudouridine synthase A [Dehalococcoides ethenogenes 195] gi|57225190|gb|AAW40247.1| tRNA pseudouridine synthase A [Dehalococcoides ethenogenes 195] Length = 248 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 3/243 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 2 LLVIEYEGTRYSGFQVQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSY 61 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I++ + V + F R AI R Y Y+I+ + Sbjct: 62 LSESSLGLDKIKGGLNFYL--PPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRSP 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNL 183 L + +AW +P LD + M A + L G HDF F S+ + +R ++ + + Sbjct: 120 LARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRRVNWTRLGIREDR 179 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A SFL Q+R+ +G+L +G G + ++ E +A+ GP AP GL Sbjct: 180 LIFNIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLSLVR 239 Query: 244 VEY 246 V Y Sbjct: 240 VNY 242 >gi|320528746|ref|ZP_08029898.1| tRNA pseudouridine synthase A [Solobacterium moorei F0204] gi|320130956|gb|EFW23534.1| tRNA pseudouridine synthase A [Solobacterium moorei F0204] Length = 361 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY ++ Y G Y GWQ Q+ G SIQ +E I +T E V V G+GRTD+GV+A Q Sbjct: 1 MMRYKCVVSYVGRNYSGWQSQRKGDSIQEILETVIERITQEKVNVIGSGRTDAGVNAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD RE A+NA+L + I I+++ D FHAR++ + Y YRI Sbjct: 61 VFMFDTKREMPARKWMGAINAFL--PNDIHIMSVEEEDDCFHARYNVRFKQYNYRINNGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 K A+ P LD E M+ +LVG HDFT+ S + +RT+ + Sbjct: 119 Y-NVFTKDTAFQCPIHLDVEKMKEGIPYLVGTHDFTSLNSSSLEEYPDQVRTVRSITLTE 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +I + V + FL +R L +G K+ + +++ L+A+ + +P EGL Sbjct: 178 EDGVITLAFVGKGFLRYMVRMMASVLIEIGKRKYEPSHIQEILEAKRKSFPHKNSPAEGL 237 Query: 240 YFDSVEY 246 + V+Y Sbjct: 238 TLEYVDY 244 >gi|124008085|ref|ZP_01692784.1| tRNA pseudouridine synthase A [Microscilla marina ATCC 23134] gi|123986499|gb|EAY26305.1| tRNA pseudouridine synthase A [Microscilla marina ATCC 23134] Length = 248 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 128/250 (51%), Gaps = 8/250 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ QKN S+Q I+ A+ ++ + + G+GRTD+GVHA++Q Sbjct: 1 MRYFLELAYSGTQYHGWQIQKNAHSVQAEIQNALSVLLRQPTDILGSGRTDAGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + K +N L + ISI + V ++ H RF A +R Y+YRI + Sbjct: 61 AHFDTEQTLDGEVFAKKMNGIL--PEDISIKRVINVHEEAHTRFDATQRHYMYRINQEKT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +G ++ D + M AAQ ++ DF F +H + + I Sbjct: 119 P--FLRGVSYYNFHRFDIDLMNKAAQIMLKHEDFQCFSKVHTDVNHYLCNIQQAYWQKET 176 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 NL+ + A FL +R+ G++ VG GK T + E+ + +DRK+ G P + Sbjct: 177 SYNVNLLVFYIQANRFLRGMVRAITGTMLNVGSGKITLEEFEQIILNKDRKQAGWSVPAQ 236 Query: 238 GLYFDSVEYS 247 GL+ VEY Sbjct: 237 GLFLAKVEYP 246 >gi|159901453|ref|YP_001547700.1| tRNA pseudouridine synthase ACD [Herpetosiphon aurantiacus ATCC 23779] gi|159894492|gb|ABX07572.1| tRNA pseudouridine synthase A [Herpetosiphon aurantiacus ATCC 23779] Length = 272 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 124/252 (49%), Gaps = 8/252 (3%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + EY G+ + G Q Q G ++Q +E A +T E AGRTD+GVHAL Sbjct: 1 MSRTLALCFEYLGTAFCGSQWQPGGRAVQTELETAWQRLTSETGRWIFAGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH + KA+NA IS+ + FHARFSA +R+Y Y + Sbjct: 61 QVAHIVSDTPRSLDTIAKAINA--ITPPDISVHEAWEMPTGFHARFSARQRTYRYVFDSA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AP A GR + LD M+ A L+G HDF F + S+ RT + Sbjct: 119 PAPSATLSGRVLRLDHQLDWAAMQAALDTLIGTHDFAAFAGAGHEGSTT-RTCMLAQLRP 177 Query: 180 FG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + A +FL +R+ VG+L +VGDG+ + + + ++DR+ GP AP Sbjct: 178 AEWLGRPVTVLHLQANAFLKHMVRNIVGTLLMVGDGRLSLEAWQAIIASRDRRNAGPTAP 237 Query: 236 PEGLYFDSVEYS 247 P+GLY +S+ Y Sbjct: 238 PQGLYLESIGYD 249 >gi|320537307|ref|ZP_08037262.1| tRNA pseudouridine synthase A [Treponema phagedenis F0421] gi|320145772|gb|EFW37433.1| tRNA pseudouridine synthase A [Treponema phagedenis F0421] Length = 261 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 + I Y+G+ + GWQ+Q KNG +IQG IEKA + + + GAGRTD+GVH Sbjct: 5 RNILLRISYDGTFFSGWQKQVKNGIETFPTIQGEIEKAASKIHKQKKEIIGAGRTDTGVH 64 Query: 57 ALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ Q A+F + A N+ L I +++ V Q HARFSA R+Y Y Sbjct: 65 AIGQAANFFTEIQTIEAKSFIPAFNSLL--PKQIRVVDAQEVSPQLHARFSAQARTYRYF 122 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + A E+ W I + D + A L G D T+F Q++S R I Sbjct: 123 IQCAKREFAHEQAYCWQIKRYPDISTLNRYAAVLRGELDCTSFSFAKDQSASKSRYIFSA 182 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + A +FL +RS G+L +T D +K L+ +DR GP AP Sbjct: 183 HFFIEKDFLVFEISANAFLWRMVRSLTGTLLRCEKEHYTQNDFKKILELKDRGLAGPTAP 242 Query: 236 PEGLYFDSVEYS 247 P+GL+ + Y Sbjct: 243 PQGLFLWHITYP 254 >gi|188994646|ref|YP_001928898.1| tRNA pseudouridine synthase A [Porphyromonas gingivalis ATCC 33277] gi|238691471|sp|B2RIV6|TRUA_PORG3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188594326|dbj|BAG33301.1| putative tRNA pseudouridine synthase A [Porphyromonas gingivalis ATCC 33277] Length = 252 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 119/251 (47%), Gaps = 8/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + YNG+ Y GWQ Q N S+Q ++E+AI + + V V GAGRTD+GVHA Sbjct: 1 MARFFIYLAYNGTRYSGWQTQPNAPSVQQTVEEAISTIVRQPVGVVGAGRTDAGVHAHEM 60 Query: 61 VAHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAH DL + L + LN L I I ++ V HARF AI R+Y Y + Sbjct: 61 VAHADLPCDTPAEAATLTERLNKLL--PRDIVIYRMAPVKADAHARFDAISRTYHYYLTE 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ +G + LD E M AA L DFT+F +H + I Sbjct: 119 QK--DPFMEGLMLKTYRKLDFERMNEAAALLPRYIDFTSFSKLHTDVKTNNCRITEARWM 176 Query: 179 SFGNL--IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + A FL +R+ VG+L VG GK + TD +++QDR G AP Sbjct: 177 PLAQTGQWVFSITADRFLRNMVRAIVGTLFHVGTGKLSITDFRDIIESQDRSRAGSSAPA 236 Query: 237 EGLYFDSVEYS 247 LY + V Y Sbjct: 237 HALYLERVVYP 247 >gi|237756326|ref|ZP_04584878.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium yellowstonense SS-5] gi|237691512|gb|EEP60568.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium yellowstonense SS-5] Length = 243 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 117/244 (47%), Gaps = 5/244 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y G+ Y GWQRQKNG IQ IE + + E + + GAGRTD+GVHALRQVA Sbjct: 5 NYKLEISYIGTNYNGWQRQKNGIGIQQVIEDLLSELLKEKITLIGAGRTDAGVHALRQVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + + LNA L ISIL + V F+ARFSA ++Y+Y+I T+ P Sbjct: 65 NFKTNKHKNTKTIYTYLNAKL--PRDISILKVEEVPLSFNARFSAKGKTYIYKINTK--P 120 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AW K LD M + D ++ I + + G Sbjct: 121 DPFLYKLAWYYDKKLDLIKMVEGINIIKQYKDLSSLAKAGDYIRKEI-DLRELKLYFDGK 179 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I I + A FL +R VG L +G G + +L+ ++ + APPEGLY Sbjct: 180 IITIEITASHFLRNMVRRIVGHLVALGRGSLSLEELKDIIEKKSPSHGKYTAPPEGLYLK 239 Query: 243 SVEY 246 +V Y Sbjct: 240 AVYY 243 >gi|296268583|ref|YP_003651215.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833] gi|296091370|gb|ADG87322.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833] Length = 294 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 119/269 (44%), Gaps = 24/269 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R+ + + Y+G+ + GW RQ ++QG +E A+ + + AGRTD+GVHA Sbjct: 6 VRFRLDLGYDGTDFQGWARQPGLRTVQGELEAALATLLRLEAPPRLTVAGRTDAGVHARG 65 Query: 60 QVAHFD-----------------LVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQ 100 QV H D LC AL L + + + +S+ Sbjct: 66 QVVHVDLPLAALAILEPRGRETATPPAERLPELCSALVRRLAAVLPPDVRVFAVSVPPDG 125 Query: 101 FHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFSA+ R Y YR+ L + PK LD E M A+ L+G HDF F Sbjct: 126 FDARFSALCRRYCYRVCDAPGGVDPLRRREVLWYPKPLDVELMNAASVRLLGEHDFAAFC 185 Query: 160 SIHCQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + ++ IR + F+ +IE VVA +F H+ +RS VG++ VG+GK Sbjct: 186 KKR-EGATTIRELRRFEWARRDDGIIEATVVADAFCHSMVRSLVGAVLAVGEGKRPVEWP 244 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L R +AP GL + V Y Sbjct: 245 AEVLARAVRDSAVRVAPAHGLTLEEVRYP 273 >gi|298209267|ref|YP_003717446.1| putative tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] gi|83849194|gb|EAP87063.1| putative tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] Length = 258 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG Y G+QRQ S+Q +E AI + + V + GAGRTD+GVH + + Sbjct: 1 MRYFLDIAYNGKPYHGFQRQPEDISVQEVLEDAIAVYFQKAVTIFGAGRTDTGVHGKQLI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD LN L D++++ ++ +V+ + HARF A+ R Y Y + TR+ Sbjct: 61 AHFDSDTTINESQFLYKLNKLL--PDSVAVRDVYLVNSEAHARFDAMAREYEYVVTTRKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E A I K LD E M AA+ L+ DF F + + I + + G Sbjct: 119 PFLSES--ALYIIKPLDVEAMNTAAKVLLEYTDFECFSKVKTDVKTFNCKITYAHWSQHG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L VG GK + + +++R E G +GLY Sbjct: 177 HKLVFTIRADRFLRNMVRAIVGTLLEVGLGKRLPGSIHDIIASKNRGEAGKSVAAQGLYL 236 Query: 242 DSVEYS 247 V Y Sbjct: 237 TKVLYP 242 >gi|296141060|ref|YP_003648303.1| tRNA pseudouridine synthase A [Tsukamurella paurometabola DSM 20162] gi|296029194|gb|ADG79964.1| tRNA pseudouridine synthase A [Tsukamurella paurometabola DSM 20162] Length = 273 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I Y+G+ + GW RQ ++ G +E+AI V V + AGRTD+GVHA Q Sbjct: 1 MTRYRLDIAYDGTDFSGWARQPERRTVCGVVEEAIGTVLRTPVQLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D P L + L L + + ++ +F ARFSA+RR Y YR+ Sbjct: 61 VAHVDTDLAL-PEGLVRRLARML--PQDVRVTAIAEAPAEFDARFSALRRHYEYRLTDAP 117 Query: 121 A-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + +D E M+ A+ L+G HDF F + ++ +R + F Sbjct: 118 YGANPLRARDTAPWRRPVDVERMQAASDALLGLHDFAAFCRRR-EGATTVRELQRFAWRR 176 Query: 180 FGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + V A +F + +RS VG++ VG+G+ + + L ++R +A G Sbjct: 177 DADGVCTAEVSADAFCWSMVRSLVGAVAAVGEGRRSVEWVAGLLDERERSSAINVAAACG 236 Query: 239 LYFDSVEYS 247 L V+Y Sbjct: 237 LTLVRVDYP 245 >gi|239636202|ref|ZP_04677206.1| tRNA pseudouridine synthase A [Staphylococcus warneri L37603] gi|239598218|gb|EEQ80711.1| tRNA pseudouridine synthase A [Staphylococcus warneri L37603] Length = 267 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + G+Q Q+ G ++Q EK + + + +H + RTD GVHA +Q Sbjct: 1 MRILVEIEYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHISIHPSSRTDRGVHAYQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + ++ VD+ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELQIENSKWQYAMNSAL--PDDIYVKSVKQVDEDFHCRYDCVGKRYRYKVYQAKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I SLD M AA+ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTYIADSLDLNQMNEAAKLFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK + ++ + L+ ++R + AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRSPEEIPQLLEEKNRNKIPFTAPSEGLYL 238 Query: 242 DSVE 245 + V Sbjct: 239 EKVY 242 >gi|73748346|ref|YP_307585.1| tRNA pseudouridine synthase A [Dehalococcoides sp. CBDB1] gi|289432394|ref|YP_003462267.1| tRNA pseudouridine synthase A [Dehalococcoides sp. GT] gi|73660062|emb|CAI82669.1| tRNA pseudouridine synthase A [Dehalococcoides sp. CBDB1] gi|288946114|gb|ADC73811.1| tRNA pseudouridine synthase A [Dehalococcoides sp. GT] Length = 246 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTRYSGFQIQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 TESSLGLEKIKGGLNYYL--PPDIAVKEVHFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L G HDF F S+ + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRRVNWTRLDIVEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +R+ A SFL Q+R+ +G L +G G + + +A+ GP AP GL V Sbjct: 179 ILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|228474552|ref|ZP_04059283.1| tRNA pseudouridine synthase A [Staphylococcus hominis SK119] gi|228271215|gb|EEK12583.1| tRNA pseudouridine synthase A [Staphylococcus hominis SK119] Length = 267 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 116/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G G+ G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNIAYQGHGFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L + I + ++ VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIEPKQWKYAMNSAL--PEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I LD + M AA+H +G HDFT F S + S RT+ +V Sbjct: 119 RNPFESGLKTFIKDDLDLDKMNEAAKHFIGTHDFTGFCSQKTEVESKERTLYQSEVVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+A++R AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLVEVGKGKRQPNEVPELLKAKNRDNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|269792760|ref|YP_003317664.1| tRNA pseudouridine synthase A [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100395|gb|ACZ19382.1| tRNA pseudouridine synthase A [Thermanaerovibrio acidaminovorans DSM 6589] Length = 251 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y GS + G+QRQ N ++QG++E+++ + GE V GAGRTD+GVHA Q Sbjct: 1 MFRYAAQVSYVGSCFAGFQRQPNLVTVQGALEESLSALAGEGVTCTGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ W L A+ A L + ++ L+ V FHARF A R Y Y + + Sbjct: 61 VVHFDMPSRWDLERLRLAIRARL--PRGLEVIRLAEVPGDFHARFDARWREYRYLVWNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + W + + LD +R A +GR DF F + +RT+ V F Sbjct: 119 WCYPHMEPYVWPVRRHLDLGVLRELAGMCLGRRDFGAFCRSADRPDDSVRTMMRCSVRRF 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ A FL IR VG++ V G+ + L+ R G PP+GL+ Sbjct: 179 GHLLVFTFRADGFLTNMIRILVGTMLEVEAGRMSRERFASLLEGGHRSRAGRTCPPQGLF 238 Query: 241 FDSVEYS 247 F V Y Sbjct: 239 FWRVGYD 245 >gi|225552068|ref|ZP_03773008.1| tRNA pseudouridine synthase A [Borrelia sp. SV1] gi|225371066|gb|EEH00496.1| tRNA pseudouridine synthase A [Borrelia sp. SV1] Length = 246 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 126/247 (51%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALTKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + ++I IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAIL-LKNSIKILKLRYVKNSFHPRFSAQKRKYSYFILNND 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNINNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIHFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 D V Y Sbjct: 240 LDRVYYE 246 >gi|320353071|ref|YP_004194410.1| tRNA pseudouridine synthase A [Desulfobulbus propionicus DSM 2032] gi|320121573|gb|ADW17119.1| tRNA pseudouridine synthase A [Desulfobulbus propionicus DSM 2032] Length = 274 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 84/258 (32%), Positives = 121/258 (46%), Gaps = 13/258 (5%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+R ++I Y+G Y GWQRQ+ G +IQ +E+ + + E + +HGAGRTD+GVHAL Sbjct: 1 MLRTIRLLIAYDGGNYCGWQRQRQGEATIQEELEQRLSHLCEEPITLHGAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAHF V K LNA L I IL FH+RFSA+ ++Y Y T Sbjct: 61 GMVAHFHTRAAIPVVAFFKGLNALL--PPDIRILAAEEASATFHSRFSALGKTYRYDFFT 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI------RTI 172 + P D + +R A LVGRHDF++F + + I RT+ Sbjct: 119 GAVQCPSTRLHRAHFPGPFDPKRLRTALTQLVGRHDFSSFERSGSRDKTAIDGRGAVRTL 178 Query: 173 DHFDVNSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + + V FL +R G+L +G GK + L A+DR + Sbjct: 179 YEIRCSPRLGCEDFWSLHVTGDGFLRQMVRILAGTLIEIGHGKRPEEAIAAILAARDRTQ 238 Query: 230 CGPLAPPEGLYFDSVEYS 247 G AP GL+ + + Y Sbjct: 239 AGLTAPACGLFLERLYYP 256 >gi|314935862|ref|ZP_07843214.1| tRNA pseudouridine synthase A [Staphylococcus hominis subsp. hominis C80] gi|313656427|gb|EFS20167.1| tRNA pseudouridine synthase A [Staphylococcus hominis subsp. hominis C80] Length = 267 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 116/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G G+ G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNIAYQGHGFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L + I + ++ VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIEPKQWIYAMNSAL--PEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I LD + M AA+H +G HDFT F S + S RT+ +V Sbjct: 119 RNPFESGLKTFIKDDLDLDKMNEAAKHFIGTHDFTGFCSQKTEVESKERTLYQSEVVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+A++R AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLVEVGKGKRQPNEVPELLKAKNRDNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|254446439|ref|ZP_05059915.1| tRNA pseudouridine synthase A [Verrucomicrobiae bacterium DG1235] gi|198260747|gb|EDY85055.1| tRNA pseudouridine synthase A [Verrucomicrobiae bacterium DG1235] Length = 243 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ Y+G+ Y GWQ+Q S+Q IE+ + + E V +HG+GRTD+GVHAL QV Sbjct: 1 MRWKCSCSYDGTNYAGWQKQSGQISVQQVIEEVLEQLLKEKVAIHGSGRTDAGVHALEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD L KAL++ L I + + + V ++FHARFSA+ + Y YR+ +A Sbjct: 61 FHFDYDWRHGGESLVKALHSKL--PKEIRVESATEVGEEFHARFSAVSKRYQYRLALGEA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSF 180 + W + + LD ++ A VG HDF F + + S R + V+ Sbjct: 119 -NPFQWAYCWPVSRKLDLNLVKEAMDRFVGTHDFGAFAANRGIEYESTERKMLATGVSQD 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A F++ +RS VG++ VG G+ +++E+ L++ R AP +GL+ Sbjct: 178 TEYVGLSFQADGFMYKMVRSLVGAVVNVGLGRMQVSEIERLLESAVRSPMVQAAPAKGLF 237 Query: 241 FDSVEY 246 + V Y Sbjct: 238 LEKVFY 243 >gi|261879379|ref|ZP_06005806.1| tRNA pseudouridine synthase A [Prevotella bergensis DSM 17361] gi|270333946|gb|EFA44732.1| tRNA pseudouridine synthase A [Prevotella bergensis DSM 17361] Length = 244 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I ++G+ Y GWQ Q NG S+Q +++ + + + + V GAGRTD+GVHA R Sbjct: 1 MRYFVWISFDGTAYHGWQIQPNGMSVQEKLQQGLTTLLRQPIEVTGAGRTDAGVHARRMA 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ RE L LN L IS + V+ + HARFSA +R+Y Y I T++ Sbjct: 61 AHFDIDRELNCEQLAYRLNRIL--PRDISCEKVVRVNDEMHARFSATKRTYRYFIHTQRN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ + + LD E M AA L+ DF F H + + + G Sbjct: 119 P--FERFFSVEMNWQLDFEQMNQAAAILLETDDFKAFCKAHADNKTTLCKVTTARWVQTG 176 Query: 182 N-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL +R+ VG+L VG T + ++ R + G PP GL+ Sbjct: 177 PATYYFEISANRFLRNMVRAVVGTLIDVGRHNITLQQFSEIVEKGSRSDAGQSMPPHGLF 236 Query: 241 FDSVEYS 247 +EY Sbjct: 237 LWDIEYE 243 >gi|328884456|emb|CCA57695.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712] Length = 285 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 118/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW +Q ++QG IE A+ VT E + AGRTDSGVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQAQGQRTVQGDIEDALRTVTRSKETYELTVAGRTDSGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL E K L ++S + + +L+ F+ARFSAI R Y YR+ Sbjct: 70 GQVAHVDLPAELWAEHRDKLLRRLAGRLSHDVRVWSLAEAPSGFNARFSAIWRRYAYRVT 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G +LD + M AA LVG HDF + + ++ IRT+ Sbjct: 130 DNPGGVDPLLRGHVLWHDWALDMDAMNEAAAALVGEHDFAAYCKRR-EGATTIRTLQELR 188 Query: 177 VNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + E V A +F H +RS VG+L VGDG K L A R + Sbjct: 189 WERRPDGVLEATVKADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|239929485|ref|ZP_04686438.1| tRNA pseudouridine synthase A [Streptomyces ghanaensis ATCC 14672] gi|291437810|ref|ZP_06577200.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672] gi|291340705|gb|EFE67661.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672] Length = 284 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 116/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+G+ GW +Q G ++QG +E A+ VT G + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGAGFHGWAKQAGGRRTVQGEVEDALRTVTRSGTTYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL K L ++ + + L F ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPAGVWAEHKGKLLKRLAGRLPKDVRVWALREAPAGFDARFSAVWRRYAYRVT 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAYCKRR-EGATTIRTLQELS 188 Query: 177 VNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I V A +F H +RS +G+L VGDG K L A R + Sbjct: 189 LVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRPPDWPGKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|269128483|ref|YP_003301853.1| tRNA pseudouridine synthase A [Thermomonospora curvata DSM 43183] gi|268313441|gb|ACY99815.1| tRNA pseudouridine synthase A [Thermomonospora curvata DSM 43183] Length = 288 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 +R + I Y+G+ + GW RQ + ++QG IE+A+ V + AGRTD+GVHA Sbjct: 7 VRLRLDIGYDGTDFSGWARQPDRRTVQGVIEEALGRVLRLDPPPALTVAGRTDAGVHARG 66 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + + ++ + + + +++ + F ARFSA+ R Y+YR+ Sbjct: 67 QVAHVDVPERAYAAVSNRLVHRLAGLLPPDVRVWRIAVAPRGFDARFSALWRRYVYRVCD 126 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+A L + P+ LD + M AA L+G HDF F + ++ IR + ++ Sbjct: 127 REAGVDPLRRREVLWHPRPLDLDRMNEAAARLLGEHDFAAFCRRR-EGATTIRRLLRYEW 185 Query: 178 NSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L VVA +F H+ +R+ VG+L VGDG+ + L A R +AP Sbjct: 186 RREEPALAAATVVADAFCHSMVRALVGALLAVGDGRREVDWPARVLAAGVRDSAVNVAPA 245 Query: 237 EGLYFDSVEYS 247 GL + + Y Sbjct: 246 HGLSLEEIGYP 256 >gi|302519630|ref|ZP_07271972.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78] gi|318058099|ref|ZP_07976822.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actG] gi|302428525|gb|EFL00341.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78] Length = 284 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIV--VVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ G ++Q ++E+A+ +VT + AGRTD+GVHA Sbjct: 1 MRLRLDLSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH + E K L ++ + + ++ + F ARFSAI R Y YR+ Sbjct: 61 GQVAHVGMADEVWAEHGEKLLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVA 120 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G + LD + M AA+ L+G HDF + + ++ IR + Sbjct: 121 DQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKR-EGATTIREMQQLF 179 Query: 177 VNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + E V A +F H +RS VG+L VGDG + K L A R + Sbjct: 180 WTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVR 239 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 240 PVGLTLEEVGYP 251 >gi|111023127|ref|YP_706099.1| pseudouridylate synthase [Rhodococcus jostii RHA1] gi|110822657|gb|ABG97941.1| pseudouridylate synthase [Rhodococcus jostii RHA1] Length = 297 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I Y+G+ + GW RQ ++ G IE+ + V + + AGRTD+GVHA QV Sbjct: 26 RRLRLDIAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRTPLQLTVAGRTDAGVHATGQV 85 Query: 62 AHFDLVREWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 AH D+ + +P + + + + I ++ + F ARFSA+RR Y YR+ + Sbjct: 86 AHVDVPVDALPDDPSRLVRRLARFLPKDVRIKRIAFAPEHFDARFSAMRRHYEYRLTSAV 145 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L PK LD E MR A+ L+G HDF F + ++ +R + FD Sbjct: 146 YGADPLRARDTVSYPKVLDLELMRSASATLLGLHDFAAFCKRR-EGATTVRDLQRFDWER 204 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++ V A +F + +RS VG++ VG+G+ +E LQ + R +AP GL Sbjct: 205 DGDVFTAFVSADAFCWSMVRSLVGAVLAVGEGRRDLGWIEGLLQEKSRSSSILVAPAHGL 264 Query: 240 YFDSVEYS 247 V+Y Sbjct: 265 SLVRVDYP 272 >gi|218186563|gb|EEC68990.1| hypothetical protein OsI_37759 [Oryza sativa Indica Group] Length = 391 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 97/318 (30%), Positives = 150/318 (47%), Gaps = 72/318 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 71 QRYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGVHALSNV 130 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ ++ I + ++ V FHAR+ A+ Sbjct: 131 CHVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHARYKALE 190 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P EK AW IP+ L+ + M+ A LVG HDF++FR+ CQA+SP Sbjct: 191 RTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSP 250 Query: 169 IRTIDHFDVNS-------------------FGNLIEIR---------------------- 187 +RT+D V G+L+ R Sbjct: 251 MRTLDELSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDASSTSEQSRF 310 Query: 188 ----------------VVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 V AR+ FL+ Q+R VG LK VG G T+ D+E+ L + Sbjct: 311 ENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTA 370 Query: 230 CGPLAPPEGLYFDSVEYS 247 P+AP GLY +V+Y Sbjct: 371 APPMAPACGLYLANVKYD 388 >gi|225448126|ref|XP_002263416.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297739525|emb|CBI29707.3| unnamed protein product [Vitis vinifera] Length = 380 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 148/317 (46%), Gaps = 71/317 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G++++A G+ V + + RTD+GVHAL V Sbjct: 62 QRYLVAVEYIGTRFSGSQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNV 121 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ ++ + ++++ V FHAR+ A Sbjct: 122 CHVDVERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARE 181 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P + EK RAW +P+ LD M+ A + LVG HDF++FR+ CQA SP Sbjct: 182 RTYFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSP 241 Query: 169 IRTIDHFDVNSF------------------------------------------------ 180 IRT+D V+ Sbjct: 242 IRTLDELCVSEVLPTPYFPSITERAQNNFTEENPLACSNNAEVPDSPSTANHDRLDGFNG 301 Query: 181 -GNLIEIRVVARSF---------LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 G +R R F L+ Q+R VG +K VG G T +D+E+ L A+ Sbjct: 302 AGQGFGVRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAA 361 Query: 231 GPLAPPEGLYFDSVEYS 247 P+AP GLY +V Y Sbjct: 362 SPMAPACGLYLGNVNYD 378 >gi|333026542|ref|ZP_08454606.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071] gi|332746394|gb|EGJ76835.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071] Length = 284 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIV--VVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ G ++Q ++E+A+ +VT + AGRTD+GVHA Sbjct: 1 MRLRLDLSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH + E K L ++ + + ++ + F ARFSAI R Y YR+ Sbjct: 61 GQVAHVGMADEVWAEHGEKLLKRLAGRLPKDVRVWRVAPAPEGFEARFSAIWRRYAYRVA 120 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G + LD + M AA+ L+G HDF + + ++ IR + Sbjct: 121 DQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKR-EGATTIREMQQLF 179 Query: 177 VNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + E V A +F H +RS VG+L VGDG + K L A R + Sbjct: 180 WTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVR 239 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 240 PVGLTLEEVGYP 251 >gi|78211903|ref|YP_380682.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9605] gi|123743387|sp|Q3AMQ5|TRUA_SYNSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78196362|gb|ABB34127.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9605] Length = 293 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 110/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y+GS + GWQRQ+NG S+Q +E AI + V AGRTD+GVHA Q Sbjct: 16 QRIALSLQYDGSSFCGWQRQRNGRSVQAVLEDAIAQLDPHRPVQTFAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L TI + +HA +SA R Y Y I + Sbjct: 76 VVHFDCSGPIPARKWAPALNGRL--PSTIRVRESVARPLDWHACYSATYRRYRYTIHNGR 133 Query: 121 APLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W LD MR A ++G HDF+ F + + T+ V Sbjct: 134 RPNLFLSPWSWHCYQHRLDESRMRDALSSMLGLHDFSAFMKAGSRRAHARTTVQEVLVER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R + L VG+ + + E+ + + R E AP GL Sbjct: 194 QGDLLRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVAAFEQRWRERRRHEVKEAAPAAGL 253 Query: 240 YFDSVEY 246 Y Sbjct: 254 CLLRAGY 260 >gi|317484413|ref|ZP_07943328.1| tRNA pseudouridine synthase A [Bilophila wadsworthia 3_1_6] gi|316924332|gb|EFV45503.1| tRNA pseudouridine synthase A [Bilophila wadsworthia 3_1_6] Length = 269 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 87/259 (33%), Positives = 121/259 (46%), Gaps = 15/259 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ Y GWQ Q +IQ IE A+ V GE V VHGAGRTD+GV Sbjct: 1 MPRLKLTIAYVGTQYHGWQTQARKNASPLPTIQNIIEDAVAHVLGERVHVHGAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + ALN L I I + +V FHA+ SA+R++Y YR Sbjct: 61 HAEAQVAHLDVPESRARMDWQLALNTLL--PRDIRIADAVLVPDTFHAQHSAVRKTYEYR 118 Query: 116 II-TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + +++ W +D E M +++L+G+ DF + ++ + +RTI Sbjct: 119 LWLSKRYTPPQLFPFVWAC-GPVDVERMDEGSRYLLGKRDFASLKNAGTDLRTTVRTILS 177 Query: 175 FDVNSFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 G L + R A FL +R+ +G L VG GK D+ L A DR+ Sbjct: 178 ITRTPEGQLPEDCLELTWRFEADGFLKQMVRNTMGLLVAVGRGKLEPADIPGILDACDRR 237 Query: 229 ECGPLAPPEGLYFDSVEYS 247 AP GL V Y Sbjct: 238 IAPLTAPACGLTMKKVWYD 256 >gi|115487730|ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group] gi|108862288|gb|ABA96079.2| tRNA pseudouridine synthase family protein, putative, expressed [Oryza sativa Japonica Group] gi|113648859|dbj|BAF29371.1| Os12g0194800 [Oryza sativa Japonica Group] gi|215678805|dbj|BAG95242.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616774|gb|EEE52906.1| hypothetical protein OsJ_35509 [Oryza sativa Japonica Group] Length = 391 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 97/318 (30%), Positives = 150/318 (47%), Gaps = 72/318 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 71 QRYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGVHALSNV 130 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ ++ I + ++ V FHAR+ A+ Sbjct: 131 CHVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHARYKALE 190 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P EK AW IP+ L+ + M+ A LVG HDF++FR+ CQA+SP Sbjct: 191 RTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSP 250 Query: 169 IRTIDHFDVNS-------------------FGNLIEIR---------------------- 187 +RT+D V G+L+ R Sbjct: 251 MRTLDELSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDASSTSEQSRF 310 Query: 188 ----------------VVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 V AR+ FL+ Q+R VG LK VG G T+ D+E+ L + Sbjct: 311 ENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTA 370 Query: 230 CGPLAPPEGLYFDSVEYS 247 P+AP GLY +V+Y Sbjct: 371 APPMAPACGLYLANVKYD 388 >gi|148655308|ref|YP_001275513.1| tRNA pseudouridine synthase ACD [Roseiflexus sp. RS-1] gi|166229831|sp|A5USG0|TRUA_ROSS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148567418|gb|ABQ89563.1| tRNA pseudouridine synthase A [Roseiflexus sp. RS-1] Length = 270 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 119/251 (47%), Gaps = 8/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ + G Q Q NG S+QG +E A +TGE + AGRTD+GVHA Q Sbjct: 1 MRNIALRIEYDGADFVGSQWQTNGRSVQGVLEAAWQQLTGERRRMTLAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + LN L + + +L FHAR+SA+RR Y Y I + Sbjct: 61 VANVRTDTRHTISTIVRGLNGIL--PEDVGVLAAWEAPDDFHARYSAVRREYRYVIDNGR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + A +P+ LD M + ++G HDF S Q S +R Sbjct: 119 TPSPLLRRHAAYVPRRLDTAAMDAVVRQVIGTHDFAPL-SDGPQEGSTVRICYEARCTRT 177 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L+ I + A +FL +R+ VG+L VG+G+ + L DR+ LAP Sbjct: 178 EVWGQPLVLIDIAANAFLRHMVRNLVGTLIQVGEGRIDADRFAAVLAGDDRR-ARVLAPA 236 Query: 237 EGLYFDSVEYS 247 GLY +V Y Sbjct: 237 HGLYLMAVRYP 247 >gi|33864024|ref|NP_895584.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9313] gi|42559756|sp|Q7TUP1|TRUA_PROMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33635608|emb|CAE21932.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9313] Length = 295 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 112/248 (45%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ S+Q +E AI + + + AGRTD+GVHA Q Sbjct: 16 RRIGLSVQYEGSNFCGWQRQPQAVSVQQVLEDAISQLDPQRPIQAVAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L TI + +HA SAI R Y Y I + Sbjct: 76 VVHFDCCGPIPAERWAPALNGRL--PSTIRVREAVARPASWHACHSAIYRRYRYTIYNGR 133 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD M+IA + L+G DF+ F+ + + TI + Sbjct: 134 RPNLFLTPWSWHRYQVRLDETMMQIALEGLLGLQDFSAFQRTGSRRAHARTTIQEVKIER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI I + A FL+ +R +G L +G+ + E+ + + R+E AP +GL Sbjct: 194 QGDLIMIEIQASGFLYGMVRLLMGQLVALGEHRLNLETFERRWKEKRRQEVKEAAPAQGL 253 Query: 240 YFDSVEYS 247 Y Sbjct: 254 CLLRAGYE 261 >gi|331702049|ref|YP_004399008.1| tRNA pseudouridine synthase A [Lactobacillus buchneri NRRL B-30929] gi|329129392|gb|AEB73945.1| tRNA pseudouridine synthase A [Lactobacillus buchneri NRRL B-30929] Length = 267 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 119/250 (47%), Gaps = 7/250 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 RY + + Y+G+ + G++RQ +I+G + + + ++ +VV+G+GRTD+GVHAL Sbjct: 5 RYKVTLAYDGTLFSGFERQPKRRTIEGVLTQKVNIMAKNPDPPIVVYGSGRTDAGVHALG 64 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + + LN+ L + I V FHAR+ + Y+YR+ Sbjct: 65 QVVHFDFPFDLPTKAIYRGLNSLL--PLDMEIKKAEKVSNTFHARYDVSGKRYVYRLDLG 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + ++ +D E ++ A VG HDF++F + A S +RTI + + Sbjct: 123 EFKDPFKRNYTGNWRFPIDIERVQTAMNDFVGEHDFSSFVASGSTARSNVRTIYEANAIL 182 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N I + FL+ +R VG + +G D+ + + +DR + P Sbjct: 183 DKSANEIRLEFYGNGFLYNMVRIMVGVVVEIGSQMRPEHDILRLYEVKDRDQARRTMPAS 242 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 243 GLYLKKVYYE 252 >gi|147669126|ref|YP_001213944.1| tRNA pseudouridine synthase A [Dehalococcoides sp. BAV1] gi|146270074|gb|ABQ17066.1| tRNA pseudouridine synthase A [Dehalococcoides sp. BAV1] Length = 246 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTRYSGFQIQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 TESSLGLEKIKGGLNYYL--PPDIAVKEVHFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L G HDF F S + + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASGLGPEIKKTVRRVNWTRLDIAEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +R+ A SFL Q+R+ +G L +G G + + +A+ GP AP GL V Sbjct: 179 ILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|257069454|ref|YP_003155709.1| pseudouridylate synthase I [Brachybacterium faecium DSM 4810] gi|256560272|gb|ACU86119.1| pseudouridylate synthase I [Brachybacterium faecium DSM 4810] Length = 346 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 119/268 (44%), Gaps = 23/268 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++QG +EKA+ + V AGRTD+GVHA QV Sbjct: 34 TRLRLDLSYDGTDFHGWAAQPGQRTVQGELEKALRRIARIPARVTVAGRTDAGVHARGQV 93 Query: 62 AHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSY 112 H DL + P +AL + L + + + + V F ARF A R Y Sbjct: 94 CHLDLPDDVLATLPGRSPRTPAEALVSRLAGVLPEDVVVHVAREVPDDFDARFGAQWRRY 153 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YRI R A + + LD E M A+ L+G HDF ++ + ++ IR + Sbjct: 154 RYRISDRPAAHDPLRRDVLRHRRPLDVEAMARASAPLLGEHDFLSYCRPR-EGATTIREL 212 Query: 173 DHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL---- 222 G LI VVA +F H +RS VG+L VG+G+ + + L Sbjct: 213 RELRWERPGEGRADEGLIVATVVADAFCHHMVRSLVGALLGVGEGRRDESWPAEVLAART 272 Query: 223 ---QAQDRKECGPLAPPEGLYFDSVEYS 247 +D PL PP+GL D V Y Sbjct: 273 REAARRDGVGAAPLCPPQGLTLDHVAYP 300 >gi|242083078|ref|XP_002441964.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor] gi|241942657|gb|EES15802.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor] Length = 387 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 91/319 (28%), Positives = 141/319 (44%), Gaps = 73/319 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 66 QRYLVAVEYIGTRFSGSQQQPNQRTVVGVLEEAFHRFIGQPVSIFCSSRTDAGVHALSNV 125 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L ++ I + ++ V FHAR+ A+ Sbjct: 126 CHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKNEGDIMVTDVRCVAPDFHARYKALE 185 Query: 110 RSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ + E AW I + LD + M+ A LVG HDF++FR+ CQA+SP Sbjct: 186 RTYHYRLLSGPESTSVFETNSAWHISEDLDIQAMKKACSILVGHHDFSSFRAAGCQANSP 245 Query: 169 IRTIDHFDVNSFGNLIEI------------------------------------------ 186 +RT+D V + Sbjct: 246 MRTLDELSVTEVFPFMFFPSSVERSQLESSNGSLVYSRTPDIESSGKGSDLCCTSSVKSE 305 Query: 187 ---------RVVARSF---------LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 R R F L+ Q+R VG LK VG G T+ D+E+ L A+ Sbjct: 306 LENGEDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVT 365 Query: 229 ECGPLAPPEGLYFDSVEYS 247 +AP GLY +V+Y Sbjct: 366 AAPRMAPAYGLYLANVKYD 384 >gi|288574694|ref|ZP_06393051.1| tRNA pseudouridine synthase A [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570435|gb|EFC91992.1| tRNA pseudouridine synthase A [Dethiosulfovibrio peptidovorans DSM 11002] Length = 247 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++Y + + Y G+ + GWQ Q + ++Q +E+A+ ++ G V V GAGRTDSGVHA QV Sbjct: 1 MKYALELSYEGNHFSGWQLQPDSITVQEVLEEALTVLEGAPVKVSGAGRTDSGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F+L + W P L A+NA L + +S++ S V F AR SA+ R Y Y + + Sbjct: 61 ASFELSKTWDPYRLTLAVNANL--PEHVSVMRASAVPDDFDARRSALWREYAYFVWHGPS 118 Query: 122 PLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + W + D + + + LVG HDF F + + +RT+ Sbjct: 119 CFPHVRDMVWWRKRDDWDMDAVDGCCRALVGEHDFGAFCRLSECPENAVRTLFSVRHIRR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L R+ + FL +R +G++ V GK E+ L R + AP GL+ Sbjct: 179 GRLSIFRIRGKGFLTNMVRIILGNIDAVATGKKRLEWFERLLLGGTRVDSATTAPASGLF 238 Query: 241 FDSVEYS 247 F V Y Sbjct: 239 FWRVGYD 245 >gi|183219967|ref|YP_001837963.1| tRNA pseudouridine synthase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910091|ref|YP_001961646.1| pseudouridylate synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687801|sp|B0SJC4|TRUA_LEPBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687833|sp|B0SC03|TRUA_LEPBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167774767|gb|ABZ93068.1| Pseudouridylate synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778389|gb|ABZ96687.1| tRNA pseudouridine synthase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 264 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV--VVHGAGRTDSGVHAL 58 M Y +++EY+G+ + GWQ+QKN ++Q SIE A+ ++ + AGRTD+GVHAL Sbjct: 1 MPNYALLVEYDGTHFNGWQKQKNLPTVQSSIESALGIILRRNPASRLSVAGRTDTGVHAL 60 Query: 59 RQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V +F L +LNA +S+ N+ V FHARFS R Y+Y++ Sbjct: 61 GMVCNFKTEHPIPNFHKLLVSLNAL--TPTGVSVKNVVEVPSDFHARFSCTGREYIYKLY 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFD 176 + + +GRA+ + +D E ++ Q LVG DF +F A +R I Sbjct: 119 YSKYESSFVEGRAFWVKGHIDWERVKKQLQVLVGEKDFRSFTKAKSMAGKRAVREILAIQ 178 Query: 177 VNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + +IR+ A F+H +R VG+L +G G+W S ++ L+ ++R + G P Sbjct: 179 LENLSPEWYQIRIRANGFMHNMVRITVGTLLDIGKGRWESRSIDSILEEKNRTQAGVTLP 238 Query: 236 PEGLYFDSVEYS 247 P+GLYF Y Sbjct: 239 PDGLYFVRAYYE 250 >gi|187734897|ref|YP_001877009.1| tRNA pseudouridine synthase A [Akkermansia muciniphila ATCC BAA-835] gi|238691867|sp|B2UNB6|TRUA_AKKM8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187424949|gb|ACD04228.1| tRNA pseudouridine synthase A [Akkermansia muciniphila ATCC BAA-835] Length = 265 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 110/256 (42%), Gaps = 11/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R Y+G Y GWQ Q G ++Q +E+A + G +HG+GRTD+GVHAL Q Sbjct: 1 MTRIRFTAAYDGRPYLGWQSQPGGRTVQDVLERAFSGLFGTTCRIHGSGRTDAGVHALGQ 60 Query: 61 VAHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V H D ALN L TI I + V FHARFSA ++Y Y I Sbjct: 61 VFHADAPDTHRIPADKWPAALNTRL--PRTIRITHAEYVPPGFHARFSATGKTYRYCISR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI------RTI 172 + G AW P + + + A G HDFT F ++ PI RTI Sbjct: 119 APILNPFDAGLAWHRPLAWSVDILEQAVHLFRGTHDFTAFAALRGNEPRPIPEGYFRRTI 178 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V G + I FL+ +R G+ GK T +L + + A + P Sbjct: 179 TQTQVAQTGEHVFITFTGTGFLYKMVRLMTGAAHEAARGKITLEELARLINAPLPDDKSP 238 Query: 233 -LAPPEGLYFDSVEYS 247 APP+GL V Y Sbjct: 239 FCAPPDGLTLMRVHYP 254 >gi|139438880|ref|ZP_01772340.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC 25986] gi|133775591|gb|EBA39411.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC 25986] Length = 274 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 6/248 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+GS Y G+ Q +++ G + +AI + + + AGRTD+GVHA+ Q Sbjct: 19 FRVAYDGSSYSGFAEQPGQATVAGELRRAIETLLRRPIDLTCAGRTDAGVHAVAQYISVP 78 Query: 66 LVREWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + + + L A + I+I + K F ARF A R+Y YRI R A Sbjct: 79 VTDAELALTRRRWLRAMDALLPKDIAINEVYRARKGFSARFDARSRTYTYRIADRDARPV 138 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFD----VNS 179 L +G W LD E M A L+G DF +F + R + + V Sbjct: 139 LSRGAVWWHRYPLDVEAMSAACPALLGEQDFKSFCKVASAVGKPTHRCVMRAEFGHEVAF 198 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + +FLH+ +R+ VG+L +G + + + + A DR GP AP GL Sbjct: 199 GEDILTFTIEGNAFLHSMVRTIVGTLVEIGMHRRKPEWMREVIDACDRTAAGPTAPACGL 258 Query: 240 YFDSVEYS 247 F V+Y Sbjct: 259 TFMGVDYD 266 >gi|255571004|ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis] gi|223534233|gb|EEF35948.1| pseudouridylate synthase, putative [Ricinus communis] Length = 372 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 144/317 (45%), Gaps = 71/317 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q NG ++ G +E+A G+ V V + RTD+GVHAL V Sbjct: 54 QRYLIAVEYIGTKFAGSQKQLNGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNV 113 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ ++ I + ++ V FHARF A Sbjct: 114 CHVDIERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQE 173 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR ++ P EK RAW + + LD M+ A + LVG HDF++FR+ CQA SP Sbjct: 174 RTYFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSP 233 Query: 169 IRTIDHFDVNSFGNLIEI------------------------------------------ 186 IRT+ V+ + + Sbjct: 234 IRTLAEISVSEVASTLYFPSITEREQNCENGENSCCKKFKTDLPMGSHSNTNVAESSFGE 293 Query: 187 -------RVVARSF---------LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 R R F L+ Q+R VG LK VG G T++D+E+ L A+ Sbjct: 294 TDLGFGIRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAA 353 Query: 231 GPLAPPEGLYFDSVEYS 247 P+AP GLY V+Y Sbjct: 354 SPMAPARGLYLGHVKYD 370 >gi|302874184|ref|YP_003842817.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307689556|ref|ZP_07632002.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302577041|gb|ADL51053.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 245 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IE++GS Y GWQ QK+ ++QG IE + +TGE + V G R D+G HA Sbjct: 1 MRNLKLTIEFDGSRYKGWQNQKDKEQTVQGKIETVLSKMTGEEIEVIGCERIDTGAHADG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +A+F E + L Y + + I + + VD++FHAR++A + Y Y I Sbjct: 61 YIANFKTNCELSCTAISIYL--YEFLPEDILVKFIEEVDERFHARYNAKAKVYEYVINNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ I L+ E M AA+ G+HDF F ++ A S +RT++ + Sbjct: 119 NLRNVFNRKYSYHIDIDLNIEEMLKAAEAFKGKHDFKAFTNLKSSAKSTVRTVEDILIKK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI+I ++A FL R VG+L VG G +T++ K L+ + E P+A + L Sbjct: 179 DNGLIKIELIADDFLLNMERIIVGTLIEVGKGNVKATNVFKMLKDGKKIETIPMAQAKAL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 FLKKVIY 245 >gi|294814496|ref|ZP_06773139.1| Pseudouridylate synthase [Streptomyces clavuligerus ATCC 27064] gi|326442885|ref|ZP_08217619.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] gi|294327095|gb|EFG08738.1| Pseudouridylate synthase [Streptomyces clavuligerus ATCC 27064] Length = 288 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 112/252 (44%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW RQ G ++QG IE A+ VT + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGRDFSGWARQAGGRRTVQGEIEDALRTVTRSARPYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL E K L ++ + I F+ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPAEVWAEHREKLLKRLAGRLDRDVRIWRAEEAPAGFNARFSAVWRRYAYRVS 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD M A+Q L+G HDF + + ++ IRT+ Sbjct: 130 DHPGGVDPLLRGHVLWHDWPLDVAAMNAASQPLLGEHDFAAYCKKR-EGATTIRTLQRLS 188 Query: 177 VNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +I V A +F H +RS VG+L VGDG K L A R + Sbjct: 189 WERDAAGVITATVRADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|227509961|ref|ZP_03940010.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190567|gb|EEI70634.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 7/243 (2%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 Y+G+ + G++RQ N +I+G + + + ++++G+GRTD+GVHA+ QVAHFD Sbjct: 2 YDGTNFSGFERQPNRRTIEGVLTQKVNVMAKMPEPPIIIYGSGRTDAGVHAVAQVAHFDF 61 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + + LN+ L + I + V FHAR+ + Y YR+ + + Sbjct: 62 PFDLSTEAIYRGLNSML--PLDMEITKVEKVSNDFHARYDVSGKKYFYRMYLGEFQNPFK 119 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--VNSFGNLI 184 + +D E + A LVG HDF++F + A S IRTI ++ N + Sbjct: 120 RNYTGHWKFPIDMEKVNHALADLVGEHDFSSFVASGSTARSNIRTIYSASAKLDQAENEV 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R VG + +G G +D+ + + +DR + P GLY V Sbjct: 180 HLEFYGNGFLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLKRV 239 Query: 245 EYS 247 Y Sbjct: 240 FYE 242 >gi|217967401|ref|YP_002352907.1| tRNA pseudouridine synthase A [Dictyoglomus turgidum DSM 6724] gi|226708649|sp|B8E1G5|TRUA_DICTD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217336500|gb|ACK42293.1| tRNA pseudouridine synthase A [Dictyoglomus turgidum DSM 6724] Length = 245 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + I Y G ++G+Q+Q +IQG +EK + + E + V GAGRTD+GVHAL Q Sbjct: 1 MTNWKLEISYIGKDFYGFQKQPGKRTIQGELEKVLSFLFDEEIRVIGAGRTDTGVHALGQ 60 Query: 61 VAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F + + L K LN L + I I + IVD FHAR+SA RR Y+Y + Sbjct: 61 VVNFKSRGHKGFSCDKLHKVLNRLL--PEDIKIKKVEIVDDSFHARYSAKRRWYIYVVYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 K +W I + ++ E + +A G HDF F + + + Sbjct: 119 NDERDLFLKDYSWWISREINRELLIFSANLFKGVHDFKNFCVTEDEDQ-TVIEVYESFWY 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ + A FL +R VGS+ + G+ + +LE L+ + ++ APP G Sbjct: 178 FKKDLLIYFISAPFFLRKMVRFIVGSMVEIALGRKSLIELEDYLKEERKERFSVPAPPWG 237 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 238 LYLFRVDY 245 >gi|302757930|ref|XP_002962388.1| hypothetical protein SELMODRAFT_78854 [Selaginella moellendorffii] gi|300169249|gb|EFJ35851.1| hypothetical protein SELMODRAFT_78854 [Selaginella moellendorffii] Length = 268 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 13/256 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ +++ Y+G+ + GWQ Q + ++QG IE A+ +T E +++ A RTD+GVHAL Sbjct: 1 KWRIVVSYDGTRFSGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALG 60 Query: 60 QVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + LN L I + +S FHA+ A + Y Y++ Sbjct: 61 QVAHFHSPACIGDLSRIHRGLNGTL--PHEIRVREISPAKSSFHAQACARTKRYQYKLFV 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFD 176 L + A+ +P+ LD M A + VG+HDF+TF + +P+R I FD Sbjct: 119 APVMDPLLRLYAYHVPERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVREILRFD 178 Query: 177 V--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP-- 232 + + G ++ + F H QIR+ VG + +G G+ + + + L +DR++ Sbjct: 179 LLEQASGPVLCFEIEGTGFFHKQIRNMVGLIVAIGKGEHEARVIPELLAMKDRQKLARVS 238 Query: 233 -LAPPEGLYFDSVEYS 247 AP GL SV Y Sbjct: 239 ITAPSRGLTLVSVHYD 254 >gi|290958122|ref|YP_003489304.1| tRNA-pseudouridine synthase [Streptomyces scabiei 87.22] gi|260647648|emb|CBG70753.1| putative tRNA-pseudouridine synthase [Streptomyces scabiei 87.22] Length = 287 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 118/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT GE + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSGETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL K L ++ + + L F+ARFSAI R Y YR+ Sbjct: 70 GQVAHVDLPEAVWREHHEKLLKRLAGRLPRDVRVWALREAPSGFNARFSAIWRRYAYRVT 129 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNEAARLLLGEHDFAAYCKRR-EGATTIRTLQELS 188 Query: 177 VNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I V A +F H +RS +G+L VGDG + K L A R + Sbjct: 189 LVRGDDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGADWPGKVLAAGVRDSAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVGYP 260 >gi|94495734|ref|ZP_01302314.1| tRNA pseudouridine synthase A [Sphingomonas sp. SKA58] gi|94425122|gb|EAT10143.1| tRNA pseudouridine synthase A [Sphingomonas sp. SKA58] Length = 246 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 124/247 (50%), Positives = 159/247 (64%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q +IE AI VTGE V+H AGRTD+GVH L Sbjct: 1 MPRFAFTVEFDGRPFMGWQRQAHGPSVQQTIEDAIAAVTGEAAVIHAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +A+NA ++ ++IL V +HARFS RSY+YRI R+ Sbjct: 61 RAHADIAKNIAPFRLMEAINARMR-PAPVAILACETVADDWHARFSCTGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + G W + + LD + M+ AAQHLVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTFDAGLVWRVVQPLDADAMQAAAQHLVGRHDFTTFRSAHCQAHSPLKTLDRLDVERQ 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VG L +VG G WT+ DL AL A+DR G APP+GLY Sbjct: 180 GDRIAIHAAARSFLHHQVRSMVGCLAMVGMGHWTANDLRDALAARDRAALGLNAPPDGLY 239 Query: 241 FDSVEYS 247 F Y Sbjct: 240 FVRATYP 246 >gi|302558965|ref|ZP_07311307.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000] gi|302476583|gb|EFL39676.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000] Length = 285 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 119/253 (47%), Gaps = 8/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 +R + + Y+G+ + GW RQ G ++QG IE A+ VT G + + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGAEFSGWARQAGGRRTVQGEIEDALRTVTRSGGTVYELTVAGRTDAGVHA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL RE K L ++ + + L F+ARFSA+ R Y YR+ Sbjct: 70 RGQVAHVDLPREVWAEHHTKLLKRLAGRLPRDVRVWALREAPAGFNARFSAVWRRYAYRV 129 Query: 117 ITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L +G LD + M AA+ L+G HDF + + ++ IRT+ Sbjct: 130 TDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAYCKRR-EGATTIRTLQEL 188 Query: 176 DVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + I V A +F H +RS +G+L VGDG + L A R + Sbjct: 189 SLLRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRPPHWPAEVLAAGVRDSAVHVV 248 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 RPHGLTLEEVGYP 261 >gi|254391364|ref|ZP_05006567.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] gi|197705054|gb|EDY50866.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] Length = 284 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 112/252 (44%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW RQ G ++QG IE A+ VT + AGRTD+GVHA Sbjct: 6 VRVRLDLSYDGRDFSGWARQAGGRRTVQGEIEDALRTVTRSARPYELTVAGRTDAGVHAR 65 Query: 59 RQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL E K L ++ + I F+ARFSA+ R Y YR+ Sbjct: 66 GQVAHVDLPAEVWAEHREKLLKRLAGRLDRDVRIWRAEEAPAGFNARFSAVWRRYAYRVS 125 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD M A+Q L+G HDF + + ++ IRT+ Sbjct: 126 DHPGGVDPLLRGHVLWHDWPLDVAAMNAASQPLLGEHDFAAYCKKR-EGATTIRTLQRLS 184 Query: 177 VNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +I V A +F H +RS VG+L VGDG K L A R + Sbjct: 185 WERDAAGVITATVRADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSAVHVVR 244 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 245 PHGLTLEEVGYP 256 >gi|227512894|ref|ZP_03942943.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577] gi|227523022|ref|ZP_03953071.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290] gi|227083894|gb|EEI19206.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577] gi|227089840|gb|EEI25152.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 7/243 (2%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 Y+G+ + G++RQ N +I+G + + + ++++G+GRTD+GVHA+ QVAHFD Sbjct: 2 YDGTNFSGFERQPNRRTIEGVLTQKVNVMAKLPEPPIIIYGSGRTDAGVHAVAQVAHFDF 61 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + + LN+ L + I + V FHAR+ + Y YR+ + + Sbjct: 62 PFDLSAEAIYRGLNSML--PLDMEITKVEKVSNDFHARYDVSGKKYFYRMYLGEFQNPFK 119 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--VNSFGNLI 184 + +D E + A LVG HDF++F + A S IRTI ++ N + Sbjct: 120 RNYTGHWKFPIDMEKVNHALADLVGEHDFSSFVASGSTARSNIRTIYSASAKLDQAENEV 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R VG + +G G +D+ + + +DR + P GLY V Sbjct: 180 HLEFYGNGFLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLKRV 239 Query: 245 EYS 247 Y Sbjct: 240 FYE 242 >gi|182681198|ref|YP_001829358.1| tRNA pseudouridine synthase A [Xylella fastidiosa M23] gi|32130280|sp|Q87DS1|TRUA_XYLFT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691112|sp|B2I9J0|TRUA_XYLF2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|182631308|gb|ACB92084.1| tRNA pseudouridine synthase A [Xylella fastidiosa M23] Length = 257 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQ 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L ++ ++++ + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSAVTRPPRAWI--LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 RQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 178 RDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 237 Query: 239 LYFDSVEYS 247 L F Y Sbjct: 238 LVFVGPLYP 246 >gi|302338166|ref|YP_003803372.1| tRNA pseudouridine synthase A [Spirochaeta smaragdinae DSM 11293] gi|301635351|gb|ADK80778.1| tRNA pseudouridine synthase A [Spirochaeta smaragdinae DSM 11293] Length = 247 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 111/242 (45%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 MI+ Y+G + GWQ Q+ ++QG IE A+ + + V V AGRTDSGVHA QV HFD Sbjct: 1 MIVAYDGRKFSGWQVQREDRTVQGVIEAALESMEKQKVRVFAAGRTDSGVHARGQVVHFD 60 Query: 66 LV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 ALNA L + I+ V FHAR+SA RSY Y + Sbjct: 61 TSLSSIEADKFAPALNAIL--PADVRIVGSYAVPDDFHARYSAKARSYRYFLYPGVCVSP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L + + + A L+G HDF++F + + S +R I +I Sbjct: 119 LLRPYCYARRSLPSIGALNRAVSPLLGSHDFSSFSASGDPSPSKVRVIYQAVFLQHRGMI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E R+ +FL +RS VG+ V + + + L +DR G AP GL+F V Sbjct: 179 EFRITGNAFLWRMVRSIVGTALEVASAEEPARAMRLILDEKDRSLAGTTAPARGLFFWRV 238 Query: 245 EY 246 Y Sbjct: 239 HY 240 >gi|140053519|gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula] Length = 361 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 146/317 (46%), Gaps = 71/317 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ +FG+Q+Q ++ G +E A G+ V V + RTD+GVHAL V Sbjct: 42 QRYLVAVEYIGTRFFGFQKQLTDRTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHALSNV 101 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ + ++++++ V FHAR+ A Sbjct: 102 CHVDIERISKRKPGEVLQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKAQE 161 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ EK RAW IP+ L+ M+ A + LVG HDF++FR+ CQA SP Sbjct: 162 RTYFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQAKSP 221 Query: 169 IRTIDHFDVNS-------------------FGNLIEIR---------------------- 187 IR++D V +L Sbjct: 222 IRSLDELSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSETVIPLGSSARIDEVSASK 281 Query: 188 ---------------VVAR--SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 V AR +FL+ Q+R VG LK VG G T TD+E+ L A+ Sbjct: 282 EDVGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTAT 341 Query: 231 GPLAPPEGLYFDSVEYS 247 P+AP GLY V+Y Sbjct: 342 SPMAPACGLYLGEVKYD 358 >gi|15807281|ref|NP_296011.1| pseudouridylate synthase I [Deinococcus radiodurans R1] gi|42559894|sp|Q9RS37|TRUA_DEIRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|6460099|gb|AAF11837.1|AE002061_4 pseudouridylate synthase I [Deinococcus radiodurans R1] Length = 280 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 132/248 (53%), Gaps = 7/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + + ++G Y GWQ Q+N S+Q +++ A+ + GE + AGRTD+GVHA Sbjct: 16 TRLRLTVAWDGRDYAGWQEQRNAVSVQETLQTALHALGGEGALRPVSAGRTDAGVHAEAM 75 Query: 61 VAHFDLVREW--VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H+D+ + V L +ALNA+L ++S+L+ + FHARFS R Y+YR+ Sbjct: 76 PLHWDVPTTFRVPLVQLPRALNAWL--PASVSVLSAEVAPAGFHARFSCTERRYVYRLWV 133 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L GRA +P LD E M AAQ L+G HDF F + + +R + +V Sbjct: 134 APQRHPLWAGRALHVPGPLDAEAMNRAAQSLIGLHDFAAFATR--EDRQTVRDLLRLEVQ 191 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L +I V SFL +R VG+L LVG GK + ++E L +++R G PP G Sbjct: 192 PQGELWDIHVAGESFLRHMVRGLVGTLLLVGQGKLGAAEVEGILASRERARAGANVPPGG 251 Query: 239 LYFDSVEY 246 LYF EY Sbjct: 252 LYFAGAEY 259 >gi|330685169|gb|EGG96833.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU121] Length = 267 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + G+Q Q+ G ++Q EK + + + +H + RTD GVHA +Q Sbjct: 1 MRILVEIEYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHIRIHPSSRTDRGVHAYQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + ++ VD+ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELQIENSKWQYAMNSAL--PDDIYVKSVQHVDEDFHCRYDCVGKRYRYKVYQAKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I SLD M AA+ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTYIADSLDLNQMNEAAKRFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK + ++ + L+ ++R + AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRSPEEIPQLLEEKNRNKIPFTAPSEGLYL 238 Query: 242 DSVE 245 + V Sbjct: 239 EKVY 242 >gi|306835272|ref|ZP_07468304.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726] gi|304568865|gb|EFM44398.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726] Length = 293 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 83/261 (31%), Positives = 122/261 (46%), Gaps = 18/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 17 VRLRLDLAYDGTNFHGWAKQKGGLRTVQGVLEEQLAMIVRTEVPLTVAGRTDAGVHARGQ 76 Query: 61 VAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ +E P + + L L + + + + F ARFSA+RR Y Sbjct: 77 VAHVDVPQEMLEQRSVAGDPGTIVRRLAKLL--PEDVRVHGCEFAPEGFDARFSALRRHY 134 Query: 113 LYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 +YRI T L K +D + M+ AA LVG HDF F A + IR Sbjct: 135 VYRITTSPRGALPTRARDTAEWFKPVDIDAMQDAATALVGLHDFAAFCKAKPNA-TTIRE 193 Query: 172 IDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + F L E RV A +F + +RS VG VG+G+ LQ Sbjct: 194 LQEFSWQDVSTPEEPQLFEARVTADAFCWSMVRSLVGCCLSVGEGRRDVDFAAALLQETK 253 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R P+AP +GL V+Y Sbjct: 254 RSSRIPVAPAKGLSLVQVDYP 274 >gi|255530580|ref|YP_003090952.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] gi|255343564|gb|ACU02890.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] Length = 261 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 119/262 (45%), Gaps = 19/262 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q N +++Q ++ A+ + + V G GRTD+GVHA + Sbjct: 1 MQRYFIELSYDGTPYHGWQIQPNATTVQEYLDSALTVYFRQPVSTLGCGRTDTGVHASQF 60 Query: 61 VAHFDLV--------------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 AHFDL + P+ +NA L I++ + V HARF Sbjct: 61 FAHFDLQTEAEQSEATGIPASKCPDPLRSVNGINALL--PYQIAVKRVFEVANTAHARFD 118 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 A R+Y Y I + P L R+W LD + M AA L+ DF+ F H Q Sbjct: 119 ATARAYHYHIHFHKNPFKL--NRSWFHKGELDMDAMNRAASILLAHSDFSCFSKSHTQTF 176 Query: 167 SPIRTIDHFDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + I + + + A FL +R+ VG+L +G + + E+ ++++ Sbjct: 177 TNNCKITEAFFEEMEDGALRFTIRADRFLRNMVRAIVGTLIRIGKNELNLAEFEQIIKSK 236 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 +R G P GLY +V Y Sbjct: 237 NRSNAGQSVPACGLYLVNVIYP 258 >gi|288928084|ref|ZP_06421931.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 317 str. F0108] gi|288330918|gb|EFC69502.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 317 str. F0108] Length = 244 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + Y+G+ Y GWQ Q N +S+Q +++A+ L+ V + GAGRTD+GVHA V Sbjct: 3 QRYFIYFSYDGTSYHGWQIQPNANSVQAEMQRAMSLLLRHPVELVGAGRTDTGVHARTMV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ V L LN L I+I + VD HARFSA +R+Y Y I Sbjct: 63 AHFDVDTPIDAVQLTYKLNRVL--PFDITINAIKAVDADMHARFSATKRTYHYYIHLD-- 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++ + ++ D + M AA+ L+ DF F H A + + + Sbjct: 119 RDPFCRAYSYALHQAPDFQLMNEAAEILLSHKDFGAFCKSHSDAKTTLCEVYEARWIKLS 178 Query: 182 NL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + +R+ A FL +R+ VG+L VG K T L ++ R++ G P L+ Sbjct: 179 DTKWHLRISANRFLRNMVRAIVGTLLDVGWHKITLEQFVDILHSKSRQQAGESVPGHALF 238 Query: 241 FDSVEY 246 + V+Y Sbjct: 239 LEDVQY 244 >gi|28198519|ref|NP_778833.1| tRNA pseudouridine synthase A [Xylella fastidiosa Temecula1] gi|28056603|gb|AAO28482.1| pseudouridylate synthase [Xylella fastidiosa Temecula1] Length = 258 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 2 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQ 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L ++ ++++ + FHARFSA R Y YR++ Sbjct: 61 CQVVHFDSAVTRPPRAWI--LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRYRLLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 119 RQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 179 RDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 238 Query: 239 LYFDSVEYS 247 L F Y Sbjct: 239 LVFVGPLYP 247 >gi|269216172|ref|ZP_06160026.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122] gi|269130431|gb|EEZ61509.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122] Length = 331 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 127/260 (48%), Gaps = 19/260 (7%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+G+ + G+ RQ + +++QG +E+ + ++ V AGRTD+GVHAL QV Sbjct: 74 VALGVAYDGAPFAGFARQAESHVTTVQGELERVLSVLYRRAVDTVCAGRTDAGVHALGQV 133 Query: 62 AHFDLVRE----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 FDL E L K++NA + + I++ F ARF A R Y Y I Sbjct: 134 VSFDLTEEEFASRPLRTLMKSMNAL--VDERITVTCAEERPAGFSARFDATSREYRYFIA 191 Query: 118 TRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHC------QASSPIR 170 T A L W + LD + M AA+ LVG HDF +F + S R Sbjct: 192 TGNARPVLIARSVWHLRGAPLDVDAMNTAARFLVGEHDFKSFCVASSALHLEGEGRSTCR 251 Query: 171 TIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + DV S ++E+R+V +FLH+ IR VG+L VG G+ ++ + L A+D Sbjct: 252 RVIEADVRSTHVMGTPVVEVRIVGNAFLHSMIRIIVGTLVAVGQGRRDASWVADVLAARD 311 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R G AP GL F SV Y Sbjct: 312 RTAAGETAPACGLTFWSVRY 331 >gi|94987504|ref|YP_595437.1| tRNA pseudouridine synthase A [Lawsonia intracellularis PHE/MN1-00] gi|123082124|sp|Q1MPG1|TRUA_LAWIP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|94731753|emb|CAJ55116.1| Pseudouridylate synthase [Lawsonia intracellularis PHE/MN1-00] Length = 257 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 83/261 (31%), Positives = 123/261 (47%), Gaps = 18/261 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + Y G+ Y GWQ Q +IQ ++EK I + G+ V V GAGRTD+GV Sbjct: 1 MPRLKFTLAYVGTAYHGWQTQRRKSLPELPTIQSTLEKVIASIIGKPVRVCGAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + + LNA L I +++ V+ FHA+ A+++ Y YR Sbjct: 61 HAEGQVAHVDIPESKLKLDWQLVLNASL--PKNIRVVHSLYVEDTFHAQHDAVQKLYAYR 118 Query: 116 II-TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI-- 172 + + + W + LD E M A+ L+G H+F + ++ + S +RTI Sbjct: 119 LWLNHRYTPPVLYPFVWSCGR-LDLEAMDKASTFLLGTHNFVSLQNRGTKLLSTVRTISA 177 Query: 173 ------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 F +N + A FL +R+ +G L LVG K + L+A+D Sbjct: 178 LYREPSQFFSLNESHEVTWF-FKADGFLKQMVRNIMGLLVLVGRRKIQPEKIPYILEAKD 236 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R+ P AP GL V YS Sbjct: 237 RRHSAPTAPAHGLTLKKVFYS 257 >gi|325105198|ref|YP_004274852.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145] gi|324974046|gb|ADY53030.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145] Length = 258 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 7/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+G Y GWQ Q N ++Q ++ A+ GE + G GRTD+GVHA + Sbjct: 5 QRFFIELSYHGLQYHGWQYQPNAITVQEKLDNALSTFFGEKIESLGCGRTDTGVHATQFY 64 Query: 62 AHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD +E+ + K +N+ L I++ +L V + HARF AIRRSY Y I Sbjct: 65 AHFDTEKEFSENSEIRFLKGINSLL--PYDIAVKHLHQVHEDAHARFDAIRRSYEYHIHF 122 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P + +WL + L+ + M I A +++ DF F + + + + Sbjct: 123 NKNP--FKTYTSWLHKEPLNVDAMNIGASYILDYEDFGAFCKANAGNFTNNCIVSRAEWE 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I + A FL +R+ VG+L +G GK+ ++ ++++ R G P G Sbjct: 181 VKNDGIIFHITANRFLRNMVRAIVGTLTDIGKGKYAPEHIKHIIESKKRSSAGASVPACG 240 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 241 LLLTEVCYP 249 >gi|119484807|ref|ZP_01619289.1| tRNA pseudouridine synthase A [Lyngbya sp. PCC 8106] gi|119457625|gb|EAW38749.1| tRNA pseudouridine synthase A [Lyngbya sp. PCC 8106] Length = 279 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 113/245 (46%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ NG ++Q IE AI V V +HGAGRTD+GVHA QVA Sbjct: 5 RIALVIQYQGTRFNGWQRQPNGRTVQEEIETAIANVVDSPVTLHGAGRTDTGVHAAAQVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF++ LN L I + + VD +HARFSA+ R Y Y + T P Sbjct: 65 HFEVTGPIPGYRWATILNHRL--PHDILVRASAQVDPSWHARFSAVWRRYRYLLYTDSRP 122 Query: 123 LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W LD + M+ A L+GRH + F+ + + G Sbjct: 123 NLFVRPWSWHYYHAPLDEKLMQAALIPLLGRHHLSAFQRAGTRRPHAWVDVQDVSCQRQG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+I V A FL+ +R +G L VG + + + R+ AP GL Sbjct: 183 PFIQIEVQASGFLYGMMRLLLGLLVEVGAQARSLENFTDIWVHERRELVKYSAPARGLCL 242 Query: 242 DSVEY 246 V Y Sbjct: 243 LRVGY 247 >gi|116624080|ref|YP_826236.1| tRNA pseudouridine synthase A [Candidatus Solibacter usitatus Ellin6076] gi|122253167|sp|Q01WL4|TRUA_SOLUE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116227242|gb|ABJ85951.1| tRNA pseudouridine synthase A [Candidatus Solibacter usitatus Ellin6076] Length = 240 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 116/249 (46%), Gaps = 12/249 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G + GWQ Q ++IQG +E+ + + G+ V V G+GRTD+GVHAL Q Sbjct: 1 MRRIRIYLAYDGGPFHGWQVQPGLATIQGILEEIVGGMEGKPVHVAGSGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + L +A+N L I IL V FH RF A+ ++Y YR+ + Sbjct: 61 VAAFSIENPIPVENLRRAVNRLL--PPAIRILCAEEVQADFHPRFDAVAKTYEYRMFRDE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFDV 177 E + P LD M A+ G HDFT F + + S +RTI + Sbjct: 119 VCSPFEWPYVYHHPYPLDEARMATLARAFEGEHDFTPFAASDARDAEGKSKVRTIFSSTL 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + RV FL +R+ VG+L G G DL G AP + Sbjct: 179 DRTPQRLVYRVRGSGFLKHMVRNIVGTLIEAGRGNI--ADLNSL-----PARSGATAPAK 231 Query: 238 GLYFDSVEY 246 GL+ SVEY Sbjct: 232 GLFQVSVEY 240 >gi|298243939|ref|ZP_06967746.1| tRNA pseudouridine synthase A [Ktedonobacter racemifer DSM 44963] gi|297556993|gb|EFH90857.1| tRNA pseudouridine synthase A [Ktedonobacter racemifer DSM 44963] Length = 264 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 87/258 (33%), Positives = 125/258 (48%), Gaps = 14/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + IEY+G+ Y G+QRQ +G ++QG++E A+ ++G + V GAGRTD GVHA Sbjct: 1 MIIACGIEYDGTDYHGFQRQSASHGPTVQGTLEAAVTQISGVQITVMGAGRTDVGVHASG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HF + +ALNA L T+ + + + FHARFSA RSY Y I Sbjct: 61 QVIHFRTESRLTVEVWRRALNAVL--PSTVVVRWAKEMPEGFHARFSAQSRSYRYTIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-------SPIRTI 172 P AL A+ + LD M A ++L+GR DF F ++ IRT+ Sbjct: 119 CFPTALRARYAYHCSRELDVTLMDDACRYLLGRKDFGAFGHSPNDSNPLKPGPHHCIRTM 178 Query: 173 DHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + LI A +FL Q+R VG+L LVG + + + + +Q ++ Sbjct: 179 LEARCLRDHQQAELIYCDFTADAFLTGQVRRMVGTLLLVGQQRLSVAEFAEIVQRAEKTH 238 Query: 230 CGPLAPPEGLYFDSVEYS 247 G AP GL VEY Sbjct: 239 PGSAAPSLGLCLVRVEYP 256 >gi|71899860|ref|ZP_00682009.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|71730377|gb|EAO32459.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] Length = 257 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQ 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L ++ ++++ + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSAVTRPPRAWI--LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 RQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 178 RDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 237 Query: 239 LYFDSVEYS 247 L F Y Sbjct: 238 LVFVGPLYP 246 >gi|302764370|ref|XP_002965606.1| hypothetical protein SELMODRAFT_84331 [Selaginella moellendorffii] gi|300166420|gb|EFJ33026.1| hypothetical protein SELMODRAFT_84331 [Selaginella moellendorffii] Length = 269 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 126/257 (49%), Gaps = 14/257 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ +++ Y+G+ + GWQ Q + ++QG IE A+ +T E +++ A RTD+GVHAL Sbjct: 1 KWRIVVSYDGTRFSGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALG 60 Query: 60 QVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + LN L I + +S FHA+ A + Y Y++ Sbjct: 61 QVAHFHSPACIGDLSRIHRGLNGTL--PHEIRVREISPAKSSFHAQACARTKRYQYKLFV 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFD 176 L + A+ +P+ LD M A + VG+HDF+TF + +P+R I F+ Sbjct: 119 APVMDPLLRLYAYHVPERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVREILRFE 178 Query: 177 VNSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP- 232 + G ++ + F H QIR+ VG + +G G+ + + + L +DR++ Sbjct: 179 LLEQASLGPVLCFEIEGTGFFHKQIRNMVGLIVAIGKGEHQARVIPELLAMKDRQKLARV 238 Query: 233 --LAPPEGLYFDSVEYS 247 AP GL SV Y Sbjct: 239 SITAPSRGLTLVSVHYD 255 >gi|223042638|ref|ZP_03612687.1| tRNA pseudouridine synthase A [Staphylococcus capitis SK14] gi|222444301|gb|EEE50397.1| tRNA pseudouridine synthase A [Staphylococcus capitis SK14] Length = 267 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L D I + N+ V++ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PDDIYVKNVQTVEENFHCRYDCVGKRYRYKVYQGEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RNPFKSGLETFINSDLDLSKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 TGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRQPDEVPQLLEEKNRNNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|71274838|ref|ZP_00651126.1| tRNA pseudouridine synthase [Xylella fastidiosa Dixon] gi|71902311|ref|ZP_00684298.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|170729917|ref|YP_001775350.1| tRNA pseudouridine synthase A [Xylella fastidiosa M12] gi|238687976|sp|B0U6K4|TRUA_XYLFM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71164570|gb|EAO14284.1| tRNA pseudouridine synthase [Xylella fastidiosa Dixon] gi|71727947|gb|EAO30171.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|167964710|gb|ACA11720.1| Pseudouridylate synthase [Xylella fastidiosa M12] Length = 257 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQ 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L ++ ++++ + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSAVTRPPRAWI--LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 RQVRPALQHQFLSWERYPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 178 RDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 237 Query: 239 LYFDSVEYS 247 L F Y Sbjct: 238 LVFVGPLYP 246 >gi|33866624|ref|NP_898183.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8102] gi|42559753|sp|Q7TTT1|TRUA_SYNPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33633402|emb|CAE08607.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8102] Length = 299 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 116/248 (46%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+NG+S+Q +E AI + + AGRTD+GVHA Q Sbjct: 16 RRIALSLQYEGSAFCGWQRQRNGNSVQAQLEAAIEQLDPYRPIQTFAAGRTDTGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P ALN L TI + + K +HA +SA R Y Y I + Sbjct: 76 VVHFDCGDRIPPAKWAPALNGRL--PFTIRVRESVLRPKDWHACYSATYRRYRYTIHNGR 133 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W + LD MR A ++G HDF+ F + + T+ D+ Sbjct: 134 RPNLFLAPWSWHRYQLRLDESRMRDALNGMLGLHDFSAFMRAGSRRAHARTTVQEVDLVR 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++ + + A FL+ +R + L VG+ + + D E+ + + R E AP GL Sbjct: 194 QGDMVRVEIQASGFLYGMVRLLIAQLVAVGEHRLSVQDFEQRWRQRRRHEVREAAPGHGL 253 Query: 240 YFDSVEYS 247 Y Sbjct: 254 CLLRAGYE 261 >gi|285017777|ref|YP_003375488.1| tRNA pseudouridine synthase a (tRNA-uridine isomeraseI (tRNA pseudouridylate synthaseI protein [Xanthomonas albilineans GPE PC73] gi|283472995|emb|CBA15500.1| probable trna pseudouridine synthase a (trna-uridine isomeraseI (trna pseudouridylate synthaseI protein [Xanthomonas albilineans] Length = 257 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 133/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q +++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSAFQGWQQLGESGGPSVQATLQGALSSVADVPVSVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L A ++ ++ + V FHARFSA R Y YR++ R Sbjct: 61 QVVHFDCAALRPPRGWM--LGATARLPPSVCVRWCVPVADDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + L E M IAAQ L+G DF+ FRS+ CQA R + V Sbjct: 119 QVRPALYRQTLSWERRPLQVEAMHIAAQALLGEQDFSAFRSVQCQALHARRELQSIVVTR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+E ++ A +FLH +R+ VGSL +VG G+ + + + L ++R+ GP A P+GL Sbjct: 179 NGELVEFQLQANAFLHHMVRNIVGSLVMVGTGEKPVSWIGELLSGRNRRIAGPTASPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFVGPLYP 246 >gi|15837974|ref|NP_298662.1| tRNA pseudouridine synthase A [Xylella fastidiosa 9a5c] gi|30913418|sp|Q9PDK6|TRUA_XYLFA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9106376|gb|AAF84182.1|AE003968_13 tRNA pseudouridine synthase A [Xylella fastidiosa 9a5c] Length = 257 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQ 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L ++ ++++ + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSAVTRPPRAWI--LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 RQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 178 RYAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 237 Query: 239 LYFDSVEYS 247 L F Y Sbjct: 238 LVFVGPLYP 246 >gi|307610015|emb|CBW99548.1| transfer RNA-pseudouridine synthase I [Legionella pneumophila 130b] Length = 253 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 75/214 (35%), Positives = 107/214 (50%), Gaps = 2/214 (0%) Query: 34 AIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN 93 A+ V + V AGRTD+GVHA QV HFD ++ N +L I + Sbjct: 24 ALSKVADSSISVVCAGRTDTGVHATNQVIHFDCEKDRSIRAWIHGANTFL--PKDICVKW 81 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 + + FHAR+SA+ R Y Y I L +G + LD M+ Q L+G + Sbjct: 82 GKEMPENFHARYSAVSRRYRYVIYNGAIRPGLLRGNVTWQYRQLDHRLMQQGGQCLLGEN 141 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 DFT+FRS+ CQ+++P+R I V G+L+ + + A +FLH +R+ G L VG GK Sbjct: 142 DFTSFRSVECQSNTPMRNIHQLQVTRHGDLVVLDITANAFLHHMVRNIAGVLIAVGSGKH 201 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ L A+DRK AP GLY V Y Sbjct: 202 PVGWVKDVLNAKDRKLGAETAPSYGLYLVQVTYP 235 >gi|29831498|ref|NP_826132.1| tRNA pseudouridine synthase A [Streptomyces avermitilis MA-4680] gi|38258718|sp|Q82DM1|TRUA_STRAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|29608614|dbj|BAC72667.1| putative pseudouridine synthase [Streptomyces avermitilis MA-4680] Length = 285 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 8/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHA 57 +R + + Y+G+ + GW +Q ++QG IE A+ VT + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGTEFSGWAKQAAGRRTVQGEIEDALRTVTRSGETTYELTVAGRTDAGVHA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL E K L ++ + + +L+ F+ARFSAI R Y YR+ Sbjct: 70 RGQVAHVDLPGELWAEHQEKLLKRLAGRLPKDVRVWSLTEAPSGFNARFSAIWRRYAYRV 129 Query: 117 I-TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L + LD + M AA+ LVG HDF + + ++ IRT+ Sbjct: 130 TDNTGGVDPLLRSHVLWHDWPLDVDAMNEAARRLVGEHDFAAYCKKR-EGATTIRTLQEL 188 Query: 176 DVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + +I V A +F H +RS +G+L VGDG K L R + Sbjct: 189 SLVRGDDGVITATVCADAFCHNMVRSLIGALLFVGDGHRGPDWPGKVLAVGVRDSAVHVV 248 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 RPHGLTLEEVGYP 261 >gi|260072704|gb|ACX30601.1| pseudouridylate synthase [uncultured SUP05 cluster bacterium] Length = 218 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E+A+ V V V +GRTD+GVHAL Q Sbjct: 1 MKLALGVEYLGTNFHGWQLQKSGIRTVQQVVEQALSSVADHPVRVFCSGRTDAGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + N L ++ V+ FHARF A R Y Y+I Sbjct: 61 VIHFETTAKREDKAWVLGGNVNL--PFDVNFKWAKQVNDDFHARFDAHARQYHYKIHNTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A++ ++LD + M AA+ L+G HDF++FR CQA SPI+T++ + Sbjct: 119 VRSAVKHAYTLWESRTLDIKLMNQAAECLIGEHDFSSFRGSLCQAKSPIKTVEFIRLTQS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 GN I + + A +FLH +R+ VG+L VG G+ S ++ Sbjct: 179 GNGILLDIKANAFLHHMVRNIVGTLIKVGKGEQDSAWVK 217 >gi|325920196|ref|ZP_08182154.1| pseudouridylate synthase I [Xanthomonas gardneri ATCC 19865] gi|325549321|gb|EGD20217.1| pseudouridylate synthase I [Xanthomonas gardneri ATCC 19865] Length = 257 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 131/248 (52%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G ++Q ++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPTVQARLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARRDPRSWM--LGTTARLPPSIAVRWCVPAAADFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + +SLD + M AAQ L+G +DF FRS+ CQA R + V Sbjct: 119 QIRPALYRQTLSWERRSLDADAMHTAAQALLGENDFNAFRSVQCQAPHARRNLQAISVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E++V A +FLH +R+ VGSL LVG G+ + L +DR GP APP+GL Sbjct: 179 IGEVVEMQVQANAFLHHMVRNIVGSLILVGTGEQPVDWIATLLAGRDRSVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|282860840|ref|ZP_06269906.1| tRNA pseudouridine synthase A [Streptomyces sp. ACTE] gi|282564576|gb|EFB70112.1| tRNA pseudouridine synthase A [Streptomyces sp. ACTE] Length = 284 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 116/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTGRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL E K L ++ + I F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPVEVWAEHREKLLRRMAGRLPLDVRIWRAEEAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R L +G + LD + M AA + G HDF + + ++ IRT+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDAMNEAAARMTGEHDFAAYCKKR-EGATTIRTLQKLHW 188 Query: 178 NSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G ++ V A +F H +R+ +G+ VGDG+ + + L A+ R + Sbjct: 189 VRDGESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAGWPAEVLAARVRDPAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVAYP 260 >gi|113954813|ref|YP_729642.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9311] gi|113882164|gb|ABI47122.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9311] Length = 299 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 111/250 (44%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 R + ++Y GS + GWQRQ G S+Q +EKAI + + AGRTDSGVHA Sbjct: 18 QRIAICLQYEGSFFCGWQRQTQGRGQSVQAVLEKAIAALDPHRPIKAIAAGRTDSGVHAS 77 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD ALN L I + +HA +SA R Y Y I Sbjct: 78 GQVVHFDCSGPIPASRWAPALNGRL--PACIRVREAIERPLSWHACYSASYRRYRYTIYN 135 Query: 119 RQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P +W K LD + M A L+G HDF F+ + S TI ++ Sbjct: 136 GRRPNLFLAPWSWHRYHKRLDEQAMAQALAGLMGEHDFAAFQRAGSRRSHSRTTIQDVNI 195 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+L+ + + A FL+ +R +G L VG+ + T E+ Q + R E APP Sbjct: 196 ERDGDLLSVEIQASGFLYGMVRLLMGQLIAVGEHRLTPQQFEQRWQERRRDEVREAAPPH 255 Query: 238 GLYFDSVEYS 247 GL Y Sbjct: 256 GLCLLRAGYP 265 >gi|294666793|ref|ZP_06732027.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603454|gb|EFF46871.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 257 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 95/248 (38%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARREPRGWM--LGTTARLPPSIAVRWCVPAADDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPALYRQTLSWERRPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQAIHVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 FGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|317488484|ref|ZP_07947035.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA] gi|316912416|gb|EFV33974.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA] Length = 280 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 11/252 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL QV Sbjct: 31 LALTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHALGQVVS 90 Query: 64 FDLVRE----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 FD+ L ++LNA D I++ + F ARF A R Y Y + Sbjct: 91 FDVDDRDIAGRSLPSLRRSLNALTH--DAITVREVEPKKLGFSARFDAQAREYHYHLCVD 148 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN 178 K +W +P LD M AQ+L+G HDF +F + + R + + Sbjct: 149 STCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTHRNVREISFH 208 Query: 179 SF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ G A Sbjct: 209 PETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAGENA 268 Query: 235 PPEGLYFDSVEY 246 P +GL F V Y Sbjct: 269 PAQGLVFWRVIY 280 >gi|254424035|ref|ZP_05037753.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7335] gi|196191524|gb|EDX86488.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7335] Length = 299 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 111/248 (44%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R ++I+Y G+ + GWQRQKN ++Q IE I V G + GAGRTD+GVHA Q Sbjct: 27 QRVALVIQYKGTHFHGWQRQKNAKRTVQAEIESVIASVLGRKPALVGAGRTDAGVHAAAQ 86 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF LN L D I + + V +HA+FSA R Y Y T + Sbjct: 87 VAHFAAPIVIPAERWAIILNDRLG--DDIVVRASTRVASDWHAQFSANWRRYRYTFYTSK 144 Query: 121 APLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + W + LD M A Q ++G H+ F + + Sbjct: 145 YPNLFVQPYVWHYYRQRLDENLMLAALQPMMGYHNLLAFHRTGSDRTHSWVELQDVQCTR 204 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I + A+ FL+ +R +G + VG+ + + + Q + R APP+GL Sbjct: 205 SGDFVRIELQAKGFLYGMVRLIMGLIVQVGERRLSPKEFTAIWQKRRRDLVKYSAPPQGL 264 Query: 240 YFDSVEYS 247 V YS Sbjct: 265 CLLRVGYS 272 >gi|227502701|ref|ZP_03932750.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725] gi|227076431|gb|EEI14394.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725] Length = 293 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 122/261 (46%), Gaps = 18/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 17 VRIRLDLAYDGTDFHGWARQKGGLRTVQGVLEEQLAMIARTEVPLTVAGRTDAGVHARGQ 76 Query: 61 VAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ +E P L + L L + + + + F ARFSA+RR Y Sbjct: 77 VAHVDVPQEMLEQRSVANDPGKLVRRLAKLL--PEDVRVHGCDFAPEGFDARFSALRRHY 134 Query: 113 LYRIITRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 +YRI T + R K +D M+ AA LVG HDF F A + IR Sbjct: 135 VYRITTSPRGALPTRARDTAEWFKPVDIGAMQDAANALVGLHDFAAFCKAKPNA-TTIRE 193 Query: 172 IDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + F L E RV A +F + +RS VG VG+G+ LQ Sbjct: 194 LQEFSWQDVSTPEEPQLFEARVTADAFCWSMVRSLVGCCLSVGEGRRDVDFAAALLQETK 253 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R P+AP +GL V+Y Sbjct: 254 RSSRIPVAPAKGLSLVQVDYP 274 >gi|168333393|ref|ZP_02691673.1| tRNA pseudouridine synthase A [Epulopiscium sp. 'N.t. morphotype B'] Length = 259 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 116/254 (45%), Gaps = 16/254 (6%) Query: 5 CMIIEYNGSGYFGWQRQKNGS-------SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 I+ Y G+ Y G+ RQ +I +E AI +T + V + GAGRTD+GVHA Sbjct: 10 KFIVAYKGTRYNGFARQAGDKVVGSGIQTISAELELAIEKITQQQVRIVGAGRTDAGVHA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV ++ + L ALN L I I ++ ++ FH FS R+ Y Y+I+ Sbjct: 70 LAQVCIANIDTQIGNSGLLLALNNKL--PVDIVIKSIEDAEEGFHPTFSGKRKMYRYQIL 127 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA----SSPIRTID 173 + P LD E M++AA LVG HDF F + SS +RTI Sbjct: 128 NTTVSCPFVAEFVYHFPHKLDVEEMKVAAXELVGTHDFRAFCAAKSNVLKKGSSTVRTIF 187 Query: 174 HFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V + I I V FL+ +R G+L G G+ + K L+ ++RK G Sbjct: 188 DIVVARGDDEIIKIDVTGDGFLYNMVRIIAGTLIDKGLGRGMP--IAKILEMRERKNAGK 245 Query: 233 LAPPEGLYFDSVEY 246 AP GL VEY Sbjct: 246 TAPASGLTMIGVEY 259 >gi|124024021|ref|YP_001018328.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9303] gi|166228748|sp|A2CC53|TRUA_PROM3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123964307|gb|ABM79063.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9303] Length = 295 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 111/248 (44%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ S+Q +E+AI + + + AGRTD+GVHA Q Sbjct: 16 RRIGLSVQYEGSNFCGWQRQPQAVSVQQVLEEAISQLDPQRPIQAVAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L +TI + +HA SA R Y Y I + Sbjct: 76 VVHFDCCGPIPAERWAPALNGRL--PNTIRVREAVARPASWHACHSATYRRYRYTIYNGR 133 Query: 121 APLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W LD M++A + L+G D + F+ + + T+ + Sbjct: 134 RPNLFLTPWSWHRYHVRLDETVMQVALEGLLGLQDLSAFQRTGSRRAHARTTVQDVKIER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI I + A FL+ +R +G L +G+ + E+ + + R+E AP +GL Sbjct: 194 QGDLIMIEIQASGFLYGMVRLLMGQLVALGEHRLNLQTFERRWKEKRRQEVKEAAPAQGL 253 Query: 240 YFDSVEYS 247 Y Sbjct: 254 CLLRAGYE 261 >gi|325832022|ref|ZP_08165119.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1] gi|325486343|gb|EGC88795.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1] Length = 284 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 11/252 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL QV Sbjct: 35 LALTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHALGQVVS 94 Query: 64 FDLVRE----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 FD+ L ++LNA D I++ + F ARF A R Y Y + Sbjct: 95 FDVDDRDIAGRSLPSLRRSLNALTH--DAITVREVEPKKLGFSARFDAQAREYHYHLCVD 152 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN 178 K +W +P LD M AQ+L+G HDF +F + + R + + Sbjct: 153 STCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTHRNVREISFH 212 Query: 179 SF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ G A Sbjct: 213 PETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAGENA 272 Query: 235 PPEGLYFDSVEY 246 P +GL F V Y Sbjct: 273 PAQGLVFWRVIY 284 >gi|111114834|ref|YP_709452.1| tRNA pseudouridine synthase A [Borrelia afzelii PKo] gi|216264050|ref|ZP_03436044.1| tRNA pseudouridine synthase A [Borrelia afzelii ACA-1] gi|122956439|sp|Q0SPF2|TRUA_BORAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110890108|gb|ABH01276.1| pseudouridylate synthase I [Borrelia afzelii PKo] gi|215980094|gb|EEC20916.1| tRNA pseudouridine synthase A [Borrelia afzelii ACA-1] Length = 246 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + + + +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSMYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L I IL L V FH RF+A +R Y Y I+ Sbjct: 61 IITFDININIQLNNLKKALNAILLKP-GIKILKLKHVKNSFHPRFNAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A+ + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWESYQAYYVNKKLNINNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHSAKFKKK 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEYS 247 D V Y Sbjct: 240 LDKVYYE 246 >gi|326777220|ref|ZP_08236485.1| tRNA pseudouridine synthase A [Streptomyces cf. griseus XylebKG-1] gi|326657553|gb|EGE42399.1| tRNA pseudouridine synthase A [Streptomyces cf. griseus XylebKG-1] Length = 284 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 117/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL K L ++ + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R L +G + LD + M AA +VG HDF + + ++ IRT+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAYCKKR-EGATTIRTLQKLRW 188 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 L+ V A +F H +R+ +G+ VGDG+ + + L A+ R + Sbjct: 189 VRDPATGLLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPAEVLAAKVRDPGVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVAYP 260 >gi|86739325|ref|YP_479725.1| tRNA pseudouridine synthase A [Frankia sp. CcI3] gi|123737799|sp|Q2JFE6|TRUA_FRASC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|86566187|gb|ABD09996.1| tRNA pseudouridine synthase A [Frankia sp. CcI3] Length = 274 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 119/249 (47%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA+ Q Sbjct: 6 VRLRLDLSYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAVGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + L + LN L + I+ L+ F ARFSA+ R Y+YRI Sbjct: 66 VAHVDLPDDVPLGGLARRLNGVL--DRAVRIIGLAPAPPGFDARFSALSRRYVYRITDAP 123 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + P+ LD M AA LVG HDF F + ++ +RT+ DV Sbjct: 124 YGAEPLRRFDTLAWPRPLDVPAMAAAALFLVGEHDFAAFCRRR-EGATTVRTLLRLDVLR 182 Query: 180 FGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + V A +F H+ +R+ VG+L VG+G+ L R +AP G Sbjct: 183 RPEGVVVADVEADAFCHSMVRALVGALLAVGEGRKPPQWPAAVLHRGVRDPAVTVAPAHG 242 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 243 LTLVDVRYP 251 >gi|314934267|ref|ZP_07841626.1| tRNA pseudouridine synthase A [Staphylococcus caprae C87] gi|313652197|gb|EFS15960.1| tRNA pseudouridine synthase A [Staphylococcus caprae C87] Length = 267 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L D I + N+ V++ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PDDIYVKNVHTVEENFHCRYDCVGKRYRYKVYQGEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RNPFKSGLETFINSDLDLSKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 TGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRQPDEVPQLLEEKNRNNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|294624568|ref|ZP_06703244.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601141|gb|EFF45202.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 257 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 133/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARREPRGWM--LGTTARLPPSIAVRWCVPAADDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q L + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPTLYRQTLSWERRPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQAIHVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 FGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|283768478|ref|ZP_06341390.1| tRNA pseudouridine synthase A [Bulleidia extructa W1219] gi|283104870|gb|EFC06242.1| tRNA pseudouridine synthase A [Bulleidia extructa W1219] Length = 320 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y G+ Y GWQ QK G+SIQ IE + + E V +GRTD+ V+AL Q Sbjct: 1 MRYFKAIVAYVGANYCGWQSQKKGNSIQEKIEAVLSQINQEKTTVIASGRTDAKVNALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + +++L I + + VD+ FHARF +++YLYRI Sbjct: 61 CFQFQSEKNIDSYRWLGIFHSFL--PKDIYVKQVEEVDETFHARFLVEQKTYLYRIHLGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 +K ++ + + L+ + MR + G H F +F S + + +RTI ++ Sbjct: 119 Y-DVFQKDDSFQLREDLNLKEMRKCWKLFEGTHSFLSFNTSSLSEYPNQVRTIFRTELRK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+ + +L +R VG+ VG GK T ++++ L R AP +GL Sbjct: 178 ISDHLELEISGNGYLRHMVRILVGTCLEVGRGKLTIEEVQRMLNDPSRHYATKKAPAQGL 237 Query: 240 YFDSVEY 246 V Y Sbjct: 238 CLKEVSY 244 >gi|239943606|ref|ZP_04695543.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] gi|239990059|ref|ZP_04710723.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 11379] gi|291447073|ref|ZP_06586463.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] gi|291350020|gb|EFE76924.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] Length = 284 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL K L ++ + + + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLDVRVWRAAPAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R L +G + LD ++M AA +VG HDF + + ++ IRT+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDSMNEAAALMVGEHDFAAYCKKR-EGATTIRTLQKLSW 188 Query: 178 NSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ V A +F H +R+ +G+ VGDG+ ++ + L A+ R + Sbjct: 189 VRDEESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPASWPAEVLAAKVRDPGVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVAYP 260 >gi|270307870|ref|YP_003329928.1| pseudouridylate synthase [Dehalococcoides sp. VS] gi|270153762|gb|ACZ61600.1| pseudouridylate synthase [Dehalococcoides sp. VS] Length = 246 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTMYSGFQIQDKGATIQGELETAIQKLTNEKTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 SESSLGLEKIKGGLNYYL--PTDIAVKEVYFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L G HDF F S+ + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDTKLMEQAFKMLEGEHDFVAFASSLGPEIKKTVRRVNWTRLDIAEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A SFL Q+R+ +G+L +G G + + +A+ GP AP GL V Sbjct: 179 VFRIEANSFLTHQVRNTIGTLVELGRGILSMREFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|58582878|ref|YP_201894.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624740|ref|YP_452112.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577717|ref|YP_001914646.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae PXO99A] gi|62901158|sp|Q5GXR2|TRUA_XANOR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123766543|sp|Q2P0T9|TRUA_XANOM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689565|sp|B2SVP0|TRUA_XANOP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58427472|gb|AAW76509.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368680|dbj|BAE69838.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522169|gb|ACD60114.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 257 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDAHREPRGWM--LGTTARLPPSIAVRWCVPAAADFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD + M +AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPALYRQTLSWERRPLDADAMHVAAQALLGENDFSAFRSVQCQALHARRNLQAIHVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 IGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|193212885|ref|YP_001998838.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327] gi|193086362|gb|ACF11638.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327] Length = 238 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 113/242 (46%), Gaps = 5/242 (2%) Query: 6 MIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M IEY+G+ Y GWQRQ + ++QG IE+ + +T E V + GAGRTD GVHA QVA F Sbjct: 1 MQIEYDGTDYSGWQRQPGDVVTVQGEIERVLGRITQEPVSIDGAGRTDRGVHARGQVASF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + E + + N+ L TI I ++ V + FHARFSA R Y Y ++ R P A Sbjct: 61 AVASEMPLGRMMHSANSLL--PSTIRITSMRQVPESFHARFSATSREYRYVLLER--PSA 116 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 ++ A D M A LVG HDF F + T+ G Sbjct: 117 IDSRFAGCSHGKPDVVLMNRLAAMLVGTHDFAAFSKETPDQQGTLCTVTEARWYRSGRFH 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A FL + +R V + VG G+ + + + L R A P GL+ V Sbjct: 177 VFRIEANRFLRSMVRFLVAGMIEVGMGRLSEEEFSRMLVDGGRPASLVPADPAGLFLWKV 236 Query: 245 EY 246 Y Sbjct: 237 RY 238 >gi|332290819|ref|YP_004429428.1| tRNA pseudouridine synthase A [Krokinobacter diaphorus 4H-3-7-5] gi|332168905|gb|AEE18160.1| tRNA pseudouridine synthase A [Krokinobacter diaphorus 4H-3-7-5] Length = 257 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 113/251 (45%), Gaps = 9/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G Y GWQRQ N ++Q +IEKA+ ++ + V + GAGRTD+GVHA + Sbjct: 1 MRYFIELSYFGKHYHGWQRQPNAVTVQETIEKALSMILRKPVQIMGAGRTDAGVHATQMY 60 Query: 62 AHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AHFD + L N L I+ + V + H RF A RSY+YRI Sbjct: 61 AHFDWDGEQFTTQESIEKLTHKFNRLL--PKDIAFKRIFQVADKAHTRFDATSRSYVYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + A + + E M AA L+ DF F + ++ + I Sbjct: 119 --GKEKNPFTSDHAPTVRNEVHIEAMNKAAAILLDYSDFECFSKSNTDVNTYLCDITRAT 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + A FL +R+ VG+L +G+GK T + + + + R + G P Sbjct: 177 WIETEDEYHFHITANRFLRNMVRAIVGTLLEIGEGKRDITWMHEVITGKSRSQAGKSVPG 236 Query: 237 EGLYFDSVEYS 247 GLY + Y Sbjct: 237 RGLYLTEILYP 247 >gi|196233677|ref|ZP_03132518.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428] gi|196222347|gb|EDY16876.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428] Length = 251 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 127/248 (51%), Gaps = 6/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R M+I Y+G + GWQ Q ++Q +E A G VVVHG+GRTD+GVHAL Q+A Sbjct: 6 RLKMLIAYDGRPFRGWQSQATKDAVQDHMEAAFAKTIGGRVVVHGSGRTDAGVHALAQIA 65 Query: 63 HFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ + V ALN +L I +L +S FHARF A + Y YR+ Sbjct: 66 HADVPAARLEVSAWRGALNNFL--PPEIRVLRVSRAAPDFHARFHARGKIYTYRMWNASY 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIHCQASSPIRTIDHFDVN 178 LE GRAW +P LD + +R AQ L G+HDF F R+ A +RTI H + Sbjct: 124 LHPLEIGRAWHMPSKLDLDILRQGAQMLEGKHDFAGFAANRAPGYAAEDTVRTIQHICLT 183 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+L+ +R FL+ +R G+L G+ T +++ L + K+ AP EG Sbjct: 184 RRGDLLNLRFEGNGFLYKMVRLLTGTLVRCAQGRAELTFIKELLAGKGAKKTSFAAPAEG 243 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 244 LYLTRVLY 251 >gi|226365626|ref|YP_002783409.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus B4] gi|226244116|dbj|BAH54464.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus B4] Length = 270 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 3/245 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + + Y+G+ + GW RQ ++ G IE+ + V + + AGRTD+GVHA QVAH Sbjct: 2 RLDVAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRSPLQLTVAGRTDAGVHATGQVAHV 61 Query: 65 DLVREWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-QAP 122 D+ E +P + + + + I +S + F ARFSA+RR Y YR+ + Sbjct: 62 DVPVEALPDEPSRLVRRLARFLPKDVRIKQISFAPEHFDARFSAMRRHYEYRLTSAVYGA 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L PK LD E MR A+ L+G HDF F + ++ +R + FD G+ Sbjct: 122 DPLRARDTVSYPKILDLELMRSASATLLGLHDFAAFCKRR-EGATTVRDLQRFDWERDGD 180 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + V A +F + +RS VG++ VG+G+ +E L+ R +AP GL Sbjct: 181 VFTAFVSADAFCWSMVRSLVGAVLAVGEGRRDLDWIEGLLRETSRSSSILVAPAHGLCLV 240 Query: 243 SVEYS 247 V+Y Sbjct: 241 RVDYP 245 >gi|111220576|ref|YP_711370.1| tRNA pseudouridine synthase A [Frankia alni ACN14a] gi|111148108|emb|CAJ59776.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) [Frankia alni ACN14a] Length = 288 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 120/249 (48%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 +R + I Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA Q Sbjct: 20 VRLRLDIAYDGTPFAGWARQPGQRTVQGDVEDALIRVARLAAVRLTVAGRTDSGVHAAGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + L + LN L ++ + L+ F ARFSA+ R Y+YRI Sbjct: 80 VAHVDLPTDVPLGGLARRLNGVL--DRSVRVTGLAPAPAGFDARFSALSRRYVYRITDAP 137 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + P+ LD M AA LVG HDF F + ++ +RT+ DV Sbjct: 138 FGAEPLRRFDTLAWPRPLDVPAMASAALLLVGEHDFAAFCRRR-EGATTVRTLLRLDVLR 196 Query: 180 FGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + V A +F H+ +R+ VG+L VG+G+ L+ R +AP G Sbjct: 197 RPDGVVVADVEADAFCHSMVRALVGALLAVGEGRRPPQWPAAVLRRGLRDPAVTVAPAHG 256 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 257 LTLVEVRYP 265 >gi|242371866|ref|ZP_04817440.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W1] gi|242350373|gb|EES41974.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W1] Length = 267 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 113/244 (46%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L + I + ++ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PNDIYVKSVQTVDENFHCRYDCVGKRYRYKVYQGAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RDPFKSGLETFIDNDLDLAKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 AGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRNPDEVPQLLEEKNRNNVPFTAPSEGLYL 238 Query: 242 DSVE 245 + V Sbjct: 239 EKVY 242 >gi|21243447|ref|NP_643029.1| tRNA pseudouridine synthase A [Xanthomonas axonopodis pv. citri str. 306] gi|30913394|sp|Q8PJ25|TRUA_XANAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21109001|gb|AAM37565.1| tRNA pseudouridine synthase A [Xanthomonas axonopodis pv. citri str. 306] Length = 257 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 133/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARREPRGWM--LGTTARLPPSIAVRWCVPAADDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPALYRQTLSWERRPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQAIHVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 IGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|260062032|ref|YP_003195112.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] gi|88783594|gb|EAR14765.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] Length = 253 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 +R+ + I Y G+ Y GWQ+Q N +IQ +E + + G + + GAGRTD+GVHA + Sbjct: 1 MRFFLEISYLGTAYHGWQKQPNALAIQEILEDRMGKLLGNGPIDLVGAGRTDAGVHARQL 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD P LNA+L I++ + V HARF A R+Y Y ++ + Sbjct: 61 FAHFDRDAAL-PSGFVHRLNAFL--PADIAVKGVYEVAPNAHARFDATGRTYEYHLVREK 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +G A+ LD M AA ++G +F F + + Sbjct: 118 --DPFREGLAYQFQGELDFGAMNRAAASMLGYGNFKAFSRSKSDVKTYNCDLREARWEEG 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG G+ + ++ +++QDR E G P +GLY Sbjct: 176 DGVWVFTISADRFLRNMVRAVVGTLLEVGKGRLDAEGVKTIIKSQDRSEAGVSVPAKGLY 235 Query: 241 FDSVEYS 247 + Y Sbjct: 236 LTRITYP 242 >gi|320451375|ref|YP_004203471.1| tRNA pseudouridine synthase A [Thermus scotoductus SA-01] gi|320151544|gb|ADW22922.1| tRNA pseudouridine synthase A [Thermus scotoductus SA-01] Length = 254 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 88/252 (34%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ+ ++QG +E+ + + G + AGRTD+GVHAL Sbjct: 1 MRRILILTEYDGTHFAGLQRQRTGLRTVQGELERVLPGI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFDL + +ALN L + + ++ V FHAR A+ R+YLYRI+ R Sbjct: 60 MPFHFDLGSRIPTEKIPQALNRLL--PEDLKVVAAREVAPDFHARKDALWRAYLYRILLR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L + RA + LD +R A L GRH+F F +A R + + Sbjct: 118 SHPSPLLRHRALWLRHPLDLAAIREALSFLPGRHNFLGFAKEEVRAGE--RELYEARMEE 175 Query: 180 F----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G + +SFL Q+R VG+L VG GK + + LQ QDR + GP AP Sbjct: 176 VEGEAGRELRFYFRGQSFLRGQVRGMVGTLLEVGLGKRSPESIRLILQTQDRGQAGPSAP 235 Query: 236 PEGLYFDSVEYS 247 P+GLYF Y Sbjct: 236 PQGLYFLEAAYP 247 >gi|311744771|ref|ZP_07718567.1| tRNA pseudouridine synthase A [Aeromicrobium marinum DSM 15272] gi|311311888|gb|EFQ81809.1| tRNA pseudouridine synthase A [Aeromicrobium marinum DSM 15272] Length = 262 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 118/249 (47%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q ++QG IE A+ + + AGRTD+GVHA Sbjct: 1 MRLRIDLAYDGTDFRGWAVQPGQRTVQGVIESALGTMLRLDPTPTLTCAGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL P +L + L YL D I I ++ F ARF+A R Y+YR+ Sbjct: 61 QVAHVDLDTH--PGVLERRLRRYL--PDDIRIKSVVEAPPGFDARFAATERRYVYRMTDH 116 Query: 120 QA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A P L + P+ L + M AA+HL+G+HDF F ++ IRT+ Sbjct: 117 PAGPDPLARRMIVHHPRPLSVDLMNAAAEHLLGQHDFAAFCKKRA-GATTIRTLLALRTI 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I V A +F H +RS +G L VG+ ++ + L + R + P G Sbjct: 176 RGGETIATTVRADAFCHAMVRSLMGCLVAVGERRFPPEFAAEVLSGRVRDGRVKVMEPHG 235 Query: 239 LYFDSVEYS 247 L + V Y Sbjct: 236 LVLEEVSYP 244 >gi|282857331|ref|ZP_06266568.1| tRNA pseudouridine synthase A [Pyramidobacter piscolens W5455] gi|282584831|gb|EFB90162.1| tRNA pseudouridine synthase A [Pyramidobacter piscolens W5455] Length = 247 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I Y+G + GWQ Q NG+++Q S+E+ + L+ G V V GAGRTD+GVHA Q Sbjct: 1 MPRYSCVISYDGGKFCGWQTQPNGATVQESLERVLSLLNGSPVKVTGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A F L REW P L A + + ++ ++ F AR A+ R Y + + Sbjct: 61 TASFLLDREWEPRRLLLA--LNANLPEGAAVASVRERPIGFDARRDALWREYAFFVWRGP 118 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + K W K D + +R L GRHDF+ F + +R + Sbjct: 119 FCYPMMKPYVWWKKKDDWDHDLIRRGCALLEGRHDFSAFCRAGDLPENAVRRMHFVRYIR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L R+ +FL +R +G+L V G+ T + LE L R + APP GL Sbjct: 179 RGRLSAFRIRGDAFLTNMVRIMIGNLDAVASGRRTLSWLEGLLDGASRGDSAMTAPPNGL 238 Query: 240 YFDSVEY 246 +F V Y Sbjct: 239 FFWKVGY 245 >gi|257790805|ref|YP_003181411.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243] gi|257474702|gb|ACV55022.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243] Length = 255 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 14/257 (5%) Query: 2 IR---YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL Sbjct: 1 MRDHTLALTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHAL 60 Query: 59 RQVAHFDLVRE----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 QV FD+ L ++LNA D I++ + F ARF A R Y Y Sbjct: 61 GQVVSFDVDDRDIAGRSLPSLRRSLNALTH--DAITVREVEPKKLGFSARFDAQAREYHY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTID 173 + K +W +P LD M AQ+L+G HDF +F + + R + Sbjct: 119 HLCVDSTCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTHRNVR 178 Query: 174 HFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ Sbjct: 179 EISFHPETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRV 238 Query: 230 CGPLAPPEGLYFDSVEY 246 G AP +GL F V Y Sbjct: 239 AGENAPAQGLVFWRVIY 255 >gi|212550510|ref|YP_002308827.1| tRNA pseudouridine synthase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229557952|sp|B6YQE4|TRUA_AZOPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212548748|dbj|BAG83416.1| tRNA pseudouridine synthase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 249 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG ++Q I++ + ++ + V + GAGRTD+GVHA Sbjct: 1 MNRYFIYLAYNGRNYCGWQIQPNGITVQQRIQQCLSILLRKSVTIIGAGRTDAGVHANLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L K LN L I I + V K HARF AI R Y Y I ++ Sbjct: 61 TAHFDWEEILSTTSLTKRLNGIL--PCDILIYKIIPVKKNAHARFDAISRKYKYYITYQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + L+ M A+ L DFT+F +H + + I + N+ Sbjct: 119 NP--FRNEQLFRLKQPLNKHLMNEASNILSEYSDFTSFCKLHSNTRTNVCRISKAEWNTV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +RS VG++ +G K + TD K +++++ P L+ Sbjct: 177 QGIDIFTIKADRFLRNMVRSIVGTMIDIGKNKLSITDFRKIIESKNHIMLKSSVPAHALF 236 Query: 241 FDSVEYS 247 +EY Sbjct: 237 LTDIEYP 243 >gi|320009073|gb|ADW03923.1| tRNA pseudouridine synthase A [Streptomyces flavogriseus ATCC 33331] Length = 284 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 117/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL E K L ++ + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPAEVWAEHEEKLLRRMAGRLPLDVRIWRAAEAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R L +G + LD + M AA + G HDF + + ++ IRT+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMTGEHDFAAYCKKR-EGATTIRTLQRLHW 188 Query: 178 NSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ V A +F H +R+ +G+ VGDG+ + + L A+ R + Sbjct: 189 VRDAESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAGWPAEVLAAKVRDPAVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVAYP 260 >gi|182436598|ref|YP_001824317.1| tRNA pseudouridine synthase A [Streptomyces griseus subsp. griseus NBRC 13350] gi|238689026|sp|B1W3X8|TRUA_STRGG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|178465114|dbj|BAG19634.1| putative pseudouridine synthase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 284 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 117/252 (46%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL K L ++ + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R L +G + LD + M AA +VG HDF + + ++ IRT+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAYCKKR-EGATTIRTLQKLRW 188 Query: 178 NSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ V A +F H +R+ +G+ VGDG+ + + L A+ R + Sbjct: 189 VRDPATGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPAEVLAAKVRDPGVHVVR 248 Query: 236 PEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 PHGLTLEEVAYP 260 >gi|42559832|sp|Q8NSV0|TRUA_CORGL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21323332|dbj|BAB97960.1| Pseudouridylate synthase (tRNA psi55) [Corynebacterium glutamicum ATCC 13032] Length = 289 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 128/262 (48%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q + ++Q +E + +V E V + AGRTD+GVHA Sbjct: 1 MRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ P L + L L D I + + + F ARFSA+RR Sbjct: 61 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLL--PDDIRVHGVRFAEPGFDARFSAMRRH 118 Query: 112 YLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YRI T A L + PK ++ E M++AA L+G HDF F A + +R Sbjct: 119 YVYRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAFCKAKPHA-TTVR 177 Query: 171 TIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + E VVA +F + +RS VGS VG+G+ S + L A Sbjct: 178 ELQKFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTAELLDAS 237 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 +R P+AP +GL V+Y Sbjct: 238 ERSPMVPVAPAKGLSLVGVDYP 259 >gi|325282723|ref|YP_004255264.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP] gi|324314532|gb|ADY25647.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP] Length = 294 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 126/249 (50%), Gaps = 7/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + ++GS Y GWQ Q N S+Q ++ A+ + E AGRTD+GVHAL Sbjct: 31 TRVLLTVAWDGSAYGGWQSQPNAPSVQDTLHAALNRLGLEAARPVAAGRTDAGVHALNMP 90 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL +P AL ++ ++++L+ FHARFS +R YLY+I+ A Sbjct: 91 AHVDLHAPRIPPE-RLALALARQLPRSVAVLSAQAAPAGFHARFSCTQRRYLYQILNAPA 149 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--- 178 LE+GR+ + LD M AAQHL+G HDF F + + +R + V Sbjct: 150 RHPLEEGRSLWVRGQLDLSAMNAAAQHLIGLHDFAAFATK--EDRQTVRELQRLAVTASP 207 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +G + + VV SFL +R VG+L VG GK + + L + DR++ G P+ Sbjct: 208 LPYGQRVTLAVVGESFLRHMVRGLVGTLIAVGQGKLAPEAVAEILASGDRRQAGINVAPD 267 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 268 GLYFAGAGY 276 >gi|318079697|ref|ZP_07987029.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actF] Length = 282 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 118/249 (47%), Gaps = 7/249 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIV--VVHGAGRTDSGVHALRQV 61 + + Y+G+ + GW RQ G ++Q ++E+A+ +VT + AGRTD+GVHA QV Sbjct: 2 RLDLSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTVAGRTDAGVHARGQV 61 Query: 62 AHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH + E K L ++ + + ++ + F ARFSAI R Y YR+ + Sbjct: 62 AHVGMADEVWAEHGEKLLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVADQA 121 Query: 121 AP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L +G + LD + M AA+ L+G HDF + + ++ IR + Sbjct: 122 GGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKR-EGATTIREMQQLFWTR 180 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + E V A +F H +RS VG+L VGDG + K L A R + P G Sbjct: 181 RADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVRPVG 240 Query: 239 LYFDSVEYS 247 L + V Y Sbjct: 241 LTLEEVGYP 249 >gi|260435918|ref|ZP_05789888.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8109] gi|260413792|gb|EEX07088.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8109] Length = 293 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+NG S+Q +E AI + V AGRTD+GVHA Q Sbjct: 16 QRIALSLQYEGSSFCGWQRQRNGRSVQAVLEDAIAQLDPHRPVQTFAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L TI + +HA +SA R Y Y I + Sbjct: 76 VVHFDCSGPIPARKWAPALNGRL--PSTIRVRESVARPMDWHACYSATYRRYRYTIHNGR 133 Query: 121 APLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P +W LD MR A ++G HDF+ F + + T+ V Sbjct: 134 RPNLFLSPWSWHRYQHRLDASRMRDALSTMLGLHDFSAFMKAGSRRAHARTTVQEVLVER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R + L VG+ + + E+ + + R E AP GL Sbjct: 194 QGDLLRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVAAFEQRWRERRRHEVKEAAPATGL 253 Query: 240 YFDSVEY 246 Y Sbjct: 254 CLLRAGY 260 >gi|260911484|ref|ZP_05918073.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 472 str. F0295] gi|260634413|gb|EEX52514.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 472 str. F0295] Length = 244 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 117/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + Y+G+ Y GWQ Q N +S+Q +++A+ L+ V + GAGRTD+GVHA V Sbjct: 3 QRYFIYFSYDGTAYHGWQIQPNANSVQAEMQRAMSLLLRHPVELVGAGRTDTGVHARTMV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V L LN L I+I + +D HARFSA +R+Y Y + Sbjct: 63 AHFDEEEPIDTVQLTYKLNRVL--PFDITINQIKPIDGGLHARFSATKRTYHYYVHLD-- 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++ + + D + M AAQ L+ DF F H A + + + Sbjct: 119 RDPFCRAYSYALHQVPDFQLMNDAAQILLSHKDFGAFCKSHSDAKTTLCDVYEARWIRLS 178 Query: 182 N-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N R+ A FL +R+ VG+L VG K + L ++ R++ G P L+ Sbjct: 179 NTKWHFRISANRFLRNMVRAIVGTLLDVGWHKVSLEQFVDILHSKSRQQAGESVPGHALF 238 Query: 241 FDSVEY 246 + V+Y Sbjct: 239 LEDVQY 244 >gi|220903970|ref|YP_002479282.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868269|gb|ACL48604.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 259 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 127/260 (48%), Gaps = 17/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R ++I Y G+GY GWQ Q+ ++QG++E A+ + G+ V VHG+GRTDSGVHA Sbjct: 1 MRLKLLISYVGTGYSGWQIQEKPKPPPTVQGALEAALRTIAGKAVRVHGSGRTDSGVHAH 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII- 117 QVAH D+ + +LNA L I +L+ S FHAR A+R++Y Y+ Sbjct: 61 GQVAHCDIPDTRAGLDWRHSLNAVL--PRDIRVLDASPAAPDFHARKDALRKTYAYQFWQ 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+ + W LD + MR A L+GRHDF R+ S RTI + Sbjct: 119 DRRFLPPHVRPYVWNC-GMLDLDAMRDALPFLLGRHDFAGLRNAGTDVESTERTIMDARL 177 Query: 178 N---------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + ++ + + A FL +R+ G L G GK + L A+DR+ Sbjct: 178 DALAPCEYYPPHAPMLRLTITADGFLKQMVRNVAGLLAACGQGKIQPAQIPALLAARDRQ 237 Query: 229 ECG-PLAPPEGLYFDSVEYS 247 APPEGL SV+Y Sbjct: 238 AVPSVTAPPEGLALVSVKYP 257 >gi|311740028|ref|ZP_07713862.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium ATCC 33035] gi|311305101|gb|EFQ81170.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium ATCC 33035] Length = 297 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 20/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 21 VRLRLDLAYDGTDFHGWAKQKGGLRTVQGVLEEKLAMIARTEVPLTVAGRTDAGVHARGQ 80 Query: 61 VAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ E P L + L L + + + F ARFSA+RR Y Sbjct: 81 VAHVDVPTEMLAQRSVAGEPGKLVRRLAKLL--PEDVRVHGCEFAPAGFDARFSALRRHY 138 Query: 113 LYRIITRQAPLALEKGR--AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +YRI T + R A I K +D + M+ AA LVG HDF F A + IR Sbjct: 139 VYRITTNPRGALPTRARDTAEWI-KPVDIDAMQEAATALVGLHDFAAFCKAKPNA-TTIR 196 Query: 171 TIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F L E RV A +F + +RS VG VG+G+ + LQ Sbjct: 197 ELQEFSWRDASTPEEPELFEARVSADAFCWSMVRSLVGCCLRVGEGRRDADFAAALLQET 256 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R P+AP +GL +V+Y Sbjct: 257 KRSSSIPVAPAKGLSLVAVDYP 278 >gi|255324781|ref|ZP_05365895.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum SK141] gi|255298256|gb|EET77559.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum SK141] Length = 297 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 20/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 21 VRLRLDLAYDGTDFHGWAKQKGGLRTVQGVLEEKLAMIARTEVPLTVAGRTDAGVHARGQ 80 Query: 61 VAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ E P L + L L + + + F ARFSA+RR Y Sbjct: 81 VAHVDVPTEMLAQRSVAGEPGKLVRRLAKLL--PEDVRVHGCEFAPAGFDARFSALRRHY 138 Query: 113 LYRIITRQAPLALEKGR--AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +YRI T + R A I K +D + M+ AA LVG HDF F A + IR Sbjct: 139 VYRITTNPRGALPTRARDTAEWI-KPVDIDAMQEAATALVGLHDFAAFCKAKPNA-TTIR 196 Query: 171 TIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F L E RV A +F + +RS VG VG+G+ + LQ Sbjct: 197 ELQEFSWRDVSTPEEPELYEARVSADAFCWSMVRSLVGCCLRVGEGRRDTDFAAALLQET 256 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R P+AP +GL +V+Y Sbjct: 257 KRSSSIPVAPAKGLSLVAVDYP 278 >gi|312199990|ref|YP_004020051.1| tRNA pseudouridine synthase A [Frankia sp. EuI1c] gi|311231326|gb|ADP84181.1| tRNA pseudouridine synthase A [Frankia sp. EuI1c] Length = 297 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 119/249 (47%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTD+GVHA RQ Sbjct: 29 QRLRIDLAYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDAGVHAARQ 88 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ E L + LN L + IL + F ARFSA+ R Y YRI Sbjct: 89 VAHVDIPDEVPLGGLARRLNGVL--DRAVRILGIGPAPVGFDARFSALSRRYNYRISDAP 146 Query: 121 A-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + P+ LD MR+AA L+G HDF F + ++ +RT+ DV Sbjct: 147 YGADPLRRHDTLAWPRPLDPAVMRLAALALLGEHDFAAFCRRR-EGATTVRTLLRLDVRR 205 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + V A +F H+ +R+ VG+L VG+G+ + + L R + P G Sbjct: 206 GPDGVLVADVEADAFCHSMVRALVGALVGVGEGRQPPGWIPQMLARAVRSPGVTVLPAHG 265 Query: 239 LYFDSVEYS 247 L V Y Sbjct: 266 LTLVEVRYP 274 >gi|42561874|ref|NP_172451.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|332190374|gb|AEE28495.1| tRNA pseudouridine synthase A [Arabidopsis thaliana] Length = 372 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 70/316 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 55 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNV 114 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 115 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 174 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA SP Sbjct: 175 RTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSP 234 Query: 169 IRTIDHFDVNSFG---------------------------------------NLIEIRVV 189 +R++D ++ +E Sbjct: 235 MRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTE 294 Query: 190 ARSF------------------LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 SF L+ Q+R VG+LK VG G+ T +D+E+ L+A+ Sbjct: 295 GDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAK 354 Query: 232 PLAPPEGLYFDSVEYS 247 P+AP GLY V Y Sbjct: 355 PMAPASGLYLARVRYE 370 >gi|226496511|ref|NP_001146958.1| pseudouridylate synthase [Zea mays] gi|195605848|gb|ACG24754.1| pseudouridylate synthase [Zea mays] Length = 386 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 91/319 (28%), Positives = 141/319 (44%), Gaps = 73/319 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 65 QRYLVAVEYIGTRFSGSQKQPNQRTVTGVLEEAFHRFIGQPVSIIFSSRTDAGVHALSNV 124 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L S+ I + ++ V FHAR+ ++ Sbjct: 125 CHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKSEGDIMVTDVCCVAPDFHARYKSLE 184 Query: 110 RSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR++ + EK W I + LD ++M+ A LVG HDF++FR+ CQA+SP Sbjct: 185 RTYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFRAAGCQANSP 244 Query: 169 IRTIDHFDVNSFGNLIEI------------------------------------------ 186 +RT+D V + Sbjct: 245 VRTLDELSVTEVFPFMFFPSSVERSELELSNVSLVYSRKPDMESSGKGSDGSCTSSVKSD 304 Query: 187 ---------RVVARSF---------LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 R R F L+ Q+R VG LK VG G T+ D+E+ L A+ Sbjct: 305 FENGKDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVT 364 Query: 229 ECGPLAPPEGLYFDSVEYS 247 +AP GLY +V+Y Sbjct: 365 AAPSMAPSCGLYLANVKYD 383 >gi|307579643|gb|ADN63612.1| tRNA pseudouridine synthase A [Xylella fastidiosa subsp. fastidiosa GB514] Length = 256 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 128/248 (51%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQC 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ ++++ + FHARFSA R Y YR++ R Sbjct: 60 QVVHFDSAVTRPPRAWI--LGTTTRLPSSVAVRWCVPTSEDFHARFSACARRYRYRLLNR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 QVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVRR 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A GL Sbjct: 178 DAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARGL 237 Query: 240 YFDSVEYS 247 F Y Sbjct: 238 VFVGPLYP 245 >gi|166712630|ref|ZP_02243837.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 257 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARREPRGWM--LGTTARLPPSIAVRWCVPTAADFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD + M +AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPALYRQTLSWERRPLDADAMHVAAQALLGENDFSAFRSVQCQALHARRNLQTIHVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 IGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIAMLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|21231977|ref|NP_637894.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767896|ref|YP_242658.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. 8004] gi|188991012|ref|YP_001903022.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. B100] gi|30913393|sp|Q8P7R5|TRUA_XANCP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81306127|sp|Q4UWD5|TRUA_XANC8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229470759|sp|B0RR81|TRUA_XANCB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21113710|gb|AAM41818.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573228|gb|AAY48638.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. 8004] gi|167732772|emb|CAP50966.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris] Length = 257 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 132/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q +++ A+ V + V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQATLQAALSSVADAPIQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ ++++ + FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARREPRGWM--LGTTARLPPSVAVRWCVPAAEDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD + M AAQ L+G +DF FRS+ CQA R + V Sbjct: 119 QIRPALYRQTLSWERRPLDAQAMHTAAQALLGENDFGAFRSVQCQALHARRNLQAITVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E++V A +FLH +R+ VGSL LVG G+ + L +DR GP APP+GL Sbjct: 179 LGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPIDWIATLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|19551801|ref|NP_599803.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC 13032] gi|62389456|ref|YP_224858.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC 13032] gi|41324790|emb|CAF19272.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 294 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 128/262 (48%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q + ++Q +E + +V E V + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 65 Query: 60 QVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ P L + L L D I + + + F ARFSA+RR Sbjct: 66 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLL--PDDIRVHGVRFAEPGFDARFSAMRRH 123 Query: 112 YLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YRI T A L + PK ++ E M++AA L+G HDF F A + +R Sbjct: 124 YVYRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAFCKAKPHA-TTVR 182 Query: 171 TIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + E VVA +F + +RS VGS VG+G+ S + L A Sbjct: 183 ELQKFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTAELLDAS 242 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 +R P+AP +GL V+Y Sbjct: 243 ERSPMVPVAPAKGLSLVGVDYP 264 >gi|269218953|ref|ZP_06162807.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 848 str. F0332] gi|269212064|gb|EEZ78404.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 848 str. F0332] Length = 310 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 19/263 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW Q +++G++ +A+ L+TG + AGRTD+GVHA QVA Sbjct: 8 RLRLRMSYDGTDFHGWAVQPGLRTVEGTVTEALNLITGGSHALTVAGRTDAGVHARGQVA 67 Query: 63 HFDLVREW----------VPVILCKALNAYLKI-------SDTISILNLSIVDKQFHARF 105 H D+ + + L+A L S +++ + F ARF Sbjct: 68 HVDVSENELARAARRAGDPCQAIMRRLSALLARESPGPKGSSDVAVTGVDFAPAGFDARF 127 Query: 106 SAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y YR+ A L + + + LD E M AA+ L G HDF ++ + Sbjct: 128 SALSRTYSYRVCDDPARFDPLRRRDVLWLREPLDVEAMGAAARKLTGEHDFISYCKPR-E 186 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + V G L+E+ A +F H+ +R+ VGSL VG G+ + L+ Sbjct: 187 GATTIRELLELKVERKGGLVEVTARADAFCHSMVRTLVGSLLKVGAGRRDEEWPARRLEE 246 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + R +APP L +SVEY Sbjct: 247 RSRNGEVAVAPPHPLTLESVEYP 269 >gi|331085203|ref|ZP_08334289.1| hypothetical protein HMPREF0987_00592 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407986|gb|EGG87476.1| hypothetical protein HMPREF0987_00592 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 248 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 115/250 (46%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+GS Y GWQR G +++ I + + +T E V + RT+ GVHA Sbjct: 1 MRNILLTLEYDGSRYQGWQRLGKGESTNTVSNKILEVLKKMTNEDVELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + + + +N YL I++L++ ++FHA +A R YLYR+ Sbjct: 61 YGQVVNFKTTTDMTLLEIKHYMNRYL--PMDIAVLSVEEKPERFHASLNAKSRIYLYRVA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P ++ + K D E M+ AA L G+HDF F ++ S + I + D+ Sbjct: 119 IAEVPSVFDRKYTYHSFKKPDTELMKQAALLLAGKHDFKKFSTVKKN-KSTEKEILNIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I+I + A FLH R + +L +G G ++++ P+ Sbjct: 178 YEDLEEIQITLEATDFLHNMPRMILSTLLDIGLGIRRKEEIDEIFSPTSSTVASAPCDPK 237 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 238 GLYLQEVVYD 247 >gi|284035717|ref|YP_003385647.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] gi|283815010|gb|ADB36848.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] Length = 252 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 120/248 (48%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQ Q NG SIQ ++E A+ G+ V + G+GRTD+GVHA +Q Sbjct: 1 MRYFIELSYRGTAYHGWQTQANGISIQITLEAALSQRLGKPVYIMGSGRTDAGVHAKQQF 60 Query: 62 AHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L +LN L + I+I + V + HARFSAI R Y Y I ++ Sbjct: 61 AHFDSEEPLDITESLIYSLNCML--PEDIAIHAIFPVSDKTHARFSAISRYYQYHITRQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 A + + L+ + M A L+ +F +F + ++ + Sbjct: 119 --DAFQGTLTYHFRPQLNVDRMNEACTLLLRHTNFQSFSKARANVTHFHCQLEFAYWRYT 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + A FL +R+ VG++ +G + + EK + A+DRK G AP GL Sbjct: 177 NVDCLTFHIKANRFLWGMVRTIVGTMLEIGQERMSLEQFEKIILARDRKIAGRAAPANGL 236 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 237 YLVEVGYP 244 >gi|167752124|ref|ZP_02424251.1| hypothetical protein ALIPUT_00366 [Alistipes putredinis DSM 17216] gi|167660365|gb|EDS04495.1| hypothetical protein ALIPUT_00366 [Alistipes putredinis DSM 17216] Length = 390 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 118/248 (47%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQRQ + S+Q +IE AI + E +++ GAGRTD+GV+A V Sbjct: 126 MRYFIELRYNGGAYCGWQRQPDMPSVQQTIEGAISTLLREPILLTGAGRTDTGVNASYYV 185 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD P + LN L I++ + V HARFSA R Y Y I R+ Sbjct: 186 AHFDTSSPVADPEQVVFKLNHML--PGDIAVSRIVPVAADAHARFSAREREYRYYIEPRK 243 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 P + +W LD M AA L+ DFT+F ++ + I + D Sbjct: 244 NP--FTRAASWQYYVPLDVAAMNRAADVLMEYEDFTSFAKLNSDNKTNICHLKRADWTVG 301 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG G++T + ++D AP +GL Sbjct: 302 RDGTLCFTIRADRFLRNMVRAIVGTLVDVGRGRYTVEQFRDIVASRDLSRSSAGAPAQGL 361 Query: 240 YFDSVEYS 247 + V Y Sbjct: 362 FLSDVLYP 369 >gi|325661070|ref|ZP_08149697.1| hypothetical protein HMPREF0490_00430 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472577|gb|EGC75788.1| hypothetical protein HMPREF0490_00430 [Lachnospiraceae bacterium 4_1_37FAA] Length = 248 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+GS Y GWQR G +++ I + + +T E + + RT+ GVHA Sbjct: 1 MRNILLTLEYDGSRYQGWQRLGKGESTNTVSNKILEVLKKMTNEDIELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + + + +N YL I++L++ ++FHA +A R YLYR+ Sbjct: 61 YGQVVNFKTTTDMTLLEIKHYMNRYL--PMDIAVLSVEEKPERFHASLNAKSRIYLYRVA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P ++ + K D E M+ AA L G+HDF F ++ S + I + D+ Sbjct: 119 IAEVPSVFDRKYTYHSFKKPDTELMKQAALLLAGKHDFKKFSTVKKN-KSTEKEILNIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I+I + A FLH R + +L +G G ++++ P+ Sbjct: 178 YEDLEEIQITLEATDFLHNMPRMILSTLLDIGLGIRRKEEIDEIFSPTSSTVASAPCDPK 237 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 238 GLYLQEVVYD 247 >gi|145294737|ref|YP_001137558.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum R] gi|140844657|dbj|BAF53656.1| hypothetical protein [Corynebacterium glutamicum R] Length = 294 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 128/262 (48%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q + ++Q +E + +V E V + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 65 Query: 60 QVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ P L + L L D I + + + F ARFSA+RR Sbjct: 66 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLL--PDDIRVHGVRFAEPGFDARFSAMRRH 123 Query: 112 YLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YRI T A L + PK ++ E M++AA L+G HDF F A + +R Sbjct: 124 YVYRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAFCKAKPHA-TTVR 182 Query: 171 TIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + E VVA +F + +RS VGS VG+G+ S + L A Sbjct: 183 ELQKFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTTELLDAS 242 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 +R P+AP +GL V+Y Sbjct: 243 ERSPMVPVAPAKGLSLVGVDYP 264 >gi|300770580|ref|ZP_07080459.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33861] gi|300763056|gb|EFK59873.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33861] Length = 257 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 8/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + I Y G+ Y GWQ Q N S+Q + + + + + GAGRTD+GVHA + Sbjct: 7 RFFLEIAYQGTAYHGWQIQHNAVSVQEKLNDVLKTLLRKDIETIGAGRTDTGVHARQLFV 66 Query: 63 HFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD + E P +LNA L I++ L VD Q HARF A RSY Y + + Sbjct: 67 HFDAIPEGLLLQPDKFVHSLNALL--PHDIAVYRLLPVDDQAHARFDATSRSYEYHLHFK 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-N 178 + P + +WL D M A Q+L+GR DF F + Q + I + Sbjct: 125 KDPFLINA--SWLTRDIPDVVKMNEACQYLLGRQDFECFSKSNTQVFTNFCDISRAEWLW 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + + A FL +R+ VG+L +G +++ + ++ R + G P G Sbjct: 183 NTDDHLVFHISADRFLRNMVRAIVGTLLEIGLKGKEPVYIQEVIASKSRSKAGTSVPAHG 242 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 243 LYLTEVVYP 251 >gi|57867747|ref|YP_189363.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis RP62A] gi|293368464|ref|ZP_06615088.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W2(grey)] gi|62901168|sp|Q5HM30|TRUA_STAEQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57638405|gb|AAW55193.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis RP62A] gi|291317422|gb|EFE57844.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W2(grey)] gi|329737018|gb|EGG73273.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU045] Length = 267 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVNETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|294055498|ref|YP_003549156.1| tRNA pseudouridine synthase A [Coraliomargarita akajimensis DSM 45221] gi|293614831|gb|ADE54986.1| tRNA pseudouridine synthase A [Coraliomargarita akajimensis DSM 45221] Length = 250 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ I Y+G+ + GWQRQ+NG ++Q +E A+ + + HG+GRTD+GVHA Q Sbjct: 1 MRWKCICSYDGTDFEGWQRQRNGLAVQNVLEAALSQIFNLPLKTHGSGRTDAGVHARGQC 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD L +AL++ L ++ I + +VD++FHAR SAI + Y+YR +A Sbjct: 61 FHFDGDWPHDTGKLIRALHSIL--PKSLRIERIDLVDERFHARHSAIGKRYVYRYHLGRA 118 Query: 122 PLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDVN 178 LE+ W + ++ M+ AA LVG HDF+ + + H + S +P++ + D+ Sbjct: 119 -HPLEQRYVWACRDTAINFGAMQEAALRLVGTHDFSAYGATHGKDSDPNPVKNVYRLDLV 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I + +L+ +RSF G+L VG + + D+E+ L+++ R AP G Sbjct: 178 KHGRQIILTTEGSGYLYRMVRSFAGALYSVGRDRLSPDDIEEILRSKIRTHRIVTAPGVG 237 Query: 239 LYFDSVEYS 247 L D V Y Sbjct: 238 LCLDEVFYP 246 >gi|94968472|ref|YP_590520.1| tRNA pseudouridine synthase A [Candidatus Koribacter versatilis Ellin345] gi|94550522|gb|ABF40446.1| tRNA pseudouridine synthase A [Candidatus Koribacter versatilis Ellin345] Length = 257 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 119/259 (45%), Gaps = 15/259 (5%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + + + Y+G + GWQ Q +IQG++ + I +TGE + G+GRTD+GVHAL Sbjct: 1 MPRNFKITLAYDGHEFHGWQIQPGKPTIQGTLAETIERITGEQTLPQGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L L ALN L +I L + FHAR SA ++Y YRI Sbjct: 61 QVASVALQTPIPADGLHIALNDKL--PPSIRALTVGEAAPDFHARHSAKGKTYRYRIYRA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS------------S 167 W P LD M+ A + G HDFT+F + + S Sbjct: 119 AICSPFLAHYVWHYPWRLDESVMQSATAFIQGEHDFTSFAASDPDRAQRIRDAEDEDGPS 178 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +RTI + G+ + V FLH +R+ VG+ G + + + K L+ + R Sbjct: 179 NVRTIYDAVWRTEGHELIFEVRGNGFLHHMVRNLVGTFVDFGKWQHPAESMAKILREKSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 GP AP GLY +VEY Sbjct: 239 SAAGPAAPASGLYLVNVEY 257 >gi|210631184|ref|ZP_03296795.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279] gi|210160151|gb|EEA91122.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279] Length = 281 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 75/250 (30%), Positives = 111/250 (44%), Gaps = 10/250 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+G+ G+ Q + ++ G +A+ + + AGRTD+GVHA+ Q Sbjct: 26 FRLGYDGAGFSGFAEQPDVRTVAGEARRALETFLRRPIDMTCAGRTDAGVHAISQYVSVP 85 Query: 66 LVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 RE +A+ A L D I++ + F ARF A R+Y YRI T A Sbjct: 86 AHREELAIEHRRWMRAMAALL--PDDIALSGVYHAAPGFSARFDARSRTYTYRIATGDAR 143 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSF- 180 L + W LD E M A HLVG HDF +F + R + Sbjct: 144 PLLTRNVTWWHRLPLDVEAMEAGAVHLVGEHDFKSFCKMSSAVGKPTCRNVISVSFAREQ 203 Query: 181 ---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + +FLH+ +R+ VG+L VG G+ + + L A DR+ GP AP Sbjct: 204 ALGEDHLAFTITGNAFLHSMVRTIVGTLVEVGAGRRDPAWVVEVLAACDRRAAGPTAPAR 263 Query: 238 GLYFDSVEYS 247 GL F V Y Sbjct: 264 GLCFMDVAYD 273 >gi|27468710|ref|NP_765347.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis ATCC 12228] gi|32130291|sp|Q8CML6|TRUA_STAES RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27316258|gb|AAO05433.1|AE016750_38 tRNA pseudouridine synthase A [Staphylococcus epidermidis ATCC 12228] gi|329731249|gb|EGG67619.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU144] Length = 267 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVNETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|237786326|ref|YP_002907031.1| tRNA pseudouridine synthase A [Corynebacterium kroppenstedtii DSM 44385] gi|237759238|gb|ACR18488.1| tRNA pseudouridine synthase A [Corynebacterium kroppenstedtii DSM 44385] Length = 298 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 88/260 (33%), Positives = 125/260 (48%), Gaps = 17/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ + S+QG IE+A V + V + AGRTD+GVHA QV Sbjct: 23 VRLRLDIAYDGTDFHGWARQNDVRSVQGDIEQAFQTVVRQPVQLVVAGRTDAGVHASGQV 82 Query: 62 AHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R P L L+ + I S F ARFSA+RR Y+ Sbjct: 83 AHVDIPRGILNTRSIHNDPSTLVSRFARLLR--PDVRIRGCSFAPDGFDARFSALRRHYV 140 Query: 114 YRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T +A L + + ++ ++M AA+ LVG HDF F A + IR + Sbjct: 141 YRVTTNRAGALPTRARDTAVWDRPVNLDSMNNAAEVLVGLHDFAAFCRARPHA-TTIRDL 199 Query: 173 DHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 HF + ++ E RV A +F +RS VG+ VG+GK +E L R Sbjct: 200 QHFSWHEVSTAVEPDVYEARVTADAFCWNMVRSIVGASLAVGEGKRPDGFMEDMLAHDSR 259 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P+AP GL V+Y Sbjct: 260 HPMVPVAPANGLTLTGVDYP 279 >gi|221632949|ref|YP_002522172.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159] gi|221155520|gb|ACM04647.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159] Length = 279 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 16/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + Y G+ + G QRQ ++QG +E+A+ + GE V V AGRTD+GVHA+ QV Sbjct: 4 QRYRLDFGYEGTAFSGSQRQPGLRTVQGVLEEALARLAGEPVRVALAGRTDAGVHAVGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FDL L +AL A+L + + + ++ + FHAR A+ R Y YRI + Sbjct: 64 ASFDLCWRHDEATLARALQAWL--PEDVVVYRVARMPAGFHARRGAVDREYRYRIWQGEQ 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSP-IRTIDHFDV 177 P + W LD M+ AAQ +G HDF +F +A++P +RTI + Sbjct: 122 PPLFLRRFVWRFAGLLDLRAMQEAAQFFLGSHDFRSFAGHGLGGPKATTPRVRTITMAEW 181 Query: 178 N----------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + + ++E RV A FL +R+ V +L VG G + + + L+ DR Sbjct: 182 HLLSPVVEPVGTGAQIVEFRVRANGFLPQMVRTMVSALVRVGTGAAEPSWISELLERCDR 241 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + P APP GL V Y Sbjct: 242 RAAPPPAPPGGLVLWRVRYP 261 >gi|239980027|ref|ZP_04702551.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] Length = 295 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 112/253 (44%), Gaps = 8/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 +R + + Y+G + GW +Q ++QG IE A+ VT + AGRTDSGVHA Sbjct: 19 VRVRLDLSYDGRDFSGWAKQAAGRRTVQGEIEDALRTVTRSGERTYELTVAGRTDSGVHA 78 Query: 58 LRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL K L ++ + I ++ F ARFSA+ R Y YR+ Sbjct: 79 RGQVAHVDLPAAVWEEHREKLLRRLAGRLPHDVRIWRVAEAPAGFDARFSAVWRRYAYRV 138 Query: 117 ITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L +G +LD E M A+ L+G HDF + + ++ IRT+ Sbjct: 139 TDHPGGVDPLLRGHVLWHDWTLDVEAMNAASVALLGEHDFAAYCKRR-EGATTIRTLQEL 197 Query: 176 DVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + I V A +F H +RS VG+L VGDG K L A R + Sbjct: 198 SWERDRDGIVTATVRADAFCHNMVRSLVGALLFVGDGHRPVEWPGKVLAAGVRDSAVHVV 257 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 258 RPHGLTLEEVGYP 270 >gi|70725835|ref|YP_252749.1| tRNA pseudouridine synthase A [Staphylococcus haemolyticus JCSC1435] gi|123735013|sp|Q4L882|TRUA_STAHJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|68446559|dbj|BAE04143.1| tRNA pseudouridine synthase A [Staphylococcus haemolyticus JCSC1435] Length = 267 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 114/244 (46%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNISYQGSQFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L D I + + VD FH R+ + + Y Y++ Sbjct: 61 FHFDTDLNIEPKQWKYAMNSAL--PDDIYVKEVQQVDDHFHCRYDCLGKRYRYKVYQATH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I + L+ M AA+H +G HDFT F S + S +RT+ ++ Sbjct: 119 RNPFESGLKTFIKEDLNYSKMNEAAKHFIGTHDFTGFCSQKTEVESKVRTLYQSEIIQTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++++ L ++R AP EGLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRHASEVSTLLNEKNRDSVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|313157719|gb|EFR57130.1| tRNA pseudouridine synthase A [Alistipes sp. HGB5] Length = 257 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 124/248 (50%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQRQ + S+Q ++E+A+ + E + V GAGRTD+GV+A V Sbjct: 4 MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLLREKIEVTGAGRTDTGVNASYYV 63 Query: 62 AHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD P + LN L I++ +++ V HARF+A R Y Y I R+ Sbjct: 64 AHFDCEEPVPDPAQVVYKLNFLL--PGDIAVGSMTPVGADAHARFAAREREYRYYIEPRK 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W LD E M AA L+ DFT+F ++ + I I H + Sbjct: 122 NP--FTRDATWQYYVPLDMERMNEAAASLLEYDDFTSFAKLNSNNKTNICRIMHAAWTAD 179 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL +RS VG+L VG G++T + + ++D AP +GL Sbjct: 180 ERGVLCFTIRADRFLRNMVRSLVGTLVDVGRGRYTPDGFREIVGSRDLSRSSGGAPAQGL 239 Query: 240 YFDSVEYS 247 + V Y Sbjct: 240 FLSDVVYP 247 >gi|294340919|emb|CAZ89314.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) (PSU-I) [Thiomonas sp. 3As] Length = 257 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 85/243 (34%), Positives = 131/243 (53%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y G+ Y GWQ Q G +Q +E+A+ G AGRTD+GVHAL QV H D Sbjct: 1 MGLSYGGTSYCGWQSQPGGCGVQDFLERALAQFLGFPTRTVCAGRTDAGVHALGQVVHLD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLS-IVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + P + +NA+L +++ + + F AR SA +R Y Y + A Sbjct: 61 TPLQREPSSWVRGVNAFL--PRDMAVQWARTDLPQTFDARRSAYQRRYRYVLRNHPVRPA 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L+ + + LD + +R+AAQ L+G HDF+ FRS CQA SP++T+ ++ G+ + Sbjct: 119 LDFAKVGWTHRPLDLDLLRLAAQCLLGEHDFSAFRSSECQALSPVKTLHAIEIARHGHTL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + + A +FLH +R+ VGSL VG+G + L + L ++DR+ P P+GLYF Sbjct: 179 VLDLRANAFLHHMVRNIVGSLLAVGNGSKPVSWLAEVLASRDRRLAAPTFMPDGLYFLGP 238 Query: 245 EYS 247 +Y Sbjct: 239 DYP 241 >gi|119718091|ref|YP_925056.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614] gi|119538752|gb|ABL83369.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614] Length = 268 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 114/251 (45%), Gaps = 8/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q ++QG + A+ V V V AGRTD+GVHA Q Sbjct: 1 MRIRLDLAYDGTDFHGWASQPGLRTVQGELSDALATVLRVPEVAVVCAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVI--LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V H DL + L + LN L + + F ARF A+ R Y YRI Sbjct: 61 VVHADLDGLEPATVEGLVRRLNGRL--PADVRVRRAVEAPAGFDARFGALWRRYAYRIAD 118 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 A L + P++LD + M A+ LVGRHDF +F + ++ IRT+ Sbjct: 119 TPAVVDPLTRSHVLAWPRALDLDAMNAASAFLVGRHDFASFCKQR-EGATTIRTLLELSW 177 Query: 178 NSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ V A +F H+ +RS VG L VG+ + E L+A+ R + Sbjct: 178 ARDPAGVLVGTVRADAFCHSMVRSLVGCLIAVGEARKPVAWAEDILRAEARDPAVAVVHA 237 Query: 237 EGLYFDSVEYS 247 GL + V Y Sbjct: 238 HGLTLEEVAYP 248 >gi|289805625|ref|ZP_06536254.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 225 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 73/210 (34%), Positives = 106/210 (50%), Gaps = 2/210 (0%) Query: 38 VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 + E + V AGRTD+GVH QV HF+ +NA L I++ + V Sbjct: 1 MANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL--PGDIAVRWVKTV 58 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 FHARFSA R Y Y I + A+ + LD E M AAQ L+G +DFT+ Sbjct: 59 PDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHRAAQCLLGENDFTS 118 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 FR++ CQ+ +P R + H +V G + + + A +F+H +R+ VGSL VG + Sbjct: 119 FRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESW 178 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + L A+DR A EGLY +V+Y Sbjct: 179 IAELLAARDRTLAAATAKAEGLYLVAVDYP 208 >gi|291451884|ref|ZP_06591274.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] gi|291354833|gb|EFE81735.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] Length = 287 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 112/253 (44%), Gaps = 8/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 +R + + Y+G + GW +Q ++QG IE A+ VT + AGRTDSGVHA Sbjct: 11 VRVRLDLSYDGRDFSGWAKQAAGRRTVQGEIEDALRTVTRSGERTYELTVAGRTDSGVHA 70 Query: 58 LRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL K L ++ + I ++ F ARFSA+ R Y YR+ Sbjct: 71 RGQVAHVDLPAAVWEEHREKLLRRLAGRLPHDVRIWRVAEAPAGFDARFSAVWRRYAYRV 130 Query: 117 ITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L +G +LD E M A+ L+G HDF + + ++ IRT+ Sbjct: 131 TDHPGGVDPLLRGHVLWHDWTLDVEAMNAASVALLGEHDFAAYCKRR-EGATTIRTLQEL 189 Query: 176 DVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + I V A +F H +RS VG+L VGDG K L A R + Sbjct: 190 SWERDRDGIVTATVRADAFCHNMVRSLVGALLFVGDGHRPVEWPGKVLAAGVRDSAVHVV 249 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 250 RPHGLTLEEVGYP 262 >gi|319400595|gb|EFV88820.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis FRI909] Length = 267 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDRNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|329945764|ref|ZP_08293451.1| putative tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 170 str. F0386] gi|328528212|gb|EGF55190.1| putative tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 170 str. F0386] Length = 308 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 126/276 (45%), Gaps = 30/276 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Q Sbjct: 14 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALATVLREPVRLAVAGRTDAGVHAAAQ 73 Query: 61 VAHFDL-VREWVP-----VILCKA-----------------LNAYLKISDTISILNLSIV 97 V H D+ W L +A L + + + + IV Sbjct: 74 VVHLDVSPEAWAALPGRSDRLPEAALLTRMAGVLAREAQTSLPRTPRGAGDVVVTGARIV 133 Query: 98 DKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 + F ARF A+ R Y YRI AP + +P LD E M +A+ L+G HDF Sbjct: 134 PEAFDARFGALSRRYTYRIADADAPRNPARRATVLWLPDRLDVEAMEASAKPLLGEHDFL 193 Query: 157 TFRSIHCQASSPIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 ++ Q ++ IRT+ + L+ + VVA +F H+ +RS VG+ VG G Sbjct: 194 SYCKPR-QGATTIRTLRALEWRRVAAGPDAGLVTLSVVADAFCHSMVRSLVGAGLAVGQG 252 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + ++ L A+ R P+APP GL + V Y Sbjct: 253 RRPAAWPDELLAARSRDGAAPVAPPHGLTLEEVVYP 288 >gi|317505831|ref|ZP_07963676.1| tRNA pseudouridine synthase [Segniliparus rugosus ATCC BAA-974] gi|316255913|gb|EFV15138.1| tRNA pseudouridine synthase [Segniliparus rugosus ATCC BAA-974] Length = 293 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 114/252 (45%), Gaps = 9/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ ++ G+IE A+ + + AGRTDSGVHA QV Sbjct: 21 VRLRLDIAYDGTEFSGWARQPGRRTVAGTIEAALGRLFQAPAQLTVAGRTDSGVHATGQV 80 Query: 62 AHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AH D+ P L + L L + +L V KQF ARFSA+RR Y Y+I Sbjct: 81 AHVDVSAELVSGRLPPDKLVRKLARML--PSDVRVLAAREVSKQFDARFSALRRHYRYQI 138 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L + LD + A+ LVG HDF F S+ IR + F Sbjct: 139 TRAPHGADPLRAREVVPWGRPLDLGLLNAASAALVGLHDFAAFCRPRP-GSTTIRELQRF 197 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D G L+ R+ A +F + RS +G++ V +G+ L A R +AP Sbjct: 198 DWTEDGPLLTARISADAFCWSMCRSLIGAVTAVAEGRREPGWAAALLTAPSRSSEIAVAP 257 Query: 236 PEGLYFDSVEYS 247 GL V+Y Sbjct: 258 GHGLCLTGVDYP 269 >gi|303247874|ref|ZP_07334142.1| tRNA pseudouridine synthase A [Desulfovibrio fructosovorans JJ] gi|302490775|gb|EFL50676.1| tRNA pseudouridine synthase A [Desulfovibrio fructosovorans JJ] Length = 265 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + GE VHGAGRTD+GVHA+ Sbjct: 1 MTRVRLTVAYDGTRFAGWQLQAPGMGRTVQGCLEEALARLCGEAARVHGAGRTDAGVHAV 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + +ALNA L D +S+++ ++V FHARF A + Y Y + T Sbjct: 61 AQVAHVDVPEARAGLPWQRALNALL--PDDVSVVDAAVVPPDFHARFDASGKIYQYTLWT 118 Query: 119 RQ-APLALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R + L + W + + LD M A G HDF F++ + R + Sbjct: 119 RPGSILPWRRPYVWDVGRFSPLDVAAMDACAALFAGYHDFAAFQNAGSSVKTSTRLVHGV 178 Query: 176 DV--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + + R A FL +R+ +G+L VG GK D+ L R+ Sbjct: 179 SRLPQANSDEMVWRFHAEGFLKQMVRNLMGALVEVGRGKAAPEDIRSVLTLGQRRHAPRT 238 Query: 234 APPEGLYFDSVEY 246 AP GL +VEY Sbjct: 239 APAGGLCLMAVEY 251 >gi|251812078|ref|ZP_04826551.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis BCM-HMP0060] gi|282875373|ref|ZP_06284246.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis SK135] gi|251804412|gb|EES57069.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis BCM-HMP0060] gi|281296138|gb|EFA88659.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis SK135] gi|329736438|gb|EGG72706.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU028] Length = 267 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 KGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|291515704|emb|CBK64914.1| pseudouridylate synthase I [Alistipes shahii WAL 8301] Length = 259 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 119/248 (47%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQRQ + S+Q ++E+A+ + E V + GAGRTD+GV+A V Sbjct: 1 MRYFLELRYNGAAYCGWQRQPDQPSVQQTLERALATLLREPVALTGAGRTDTGVNAAYYV 60 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD R P LN L I++ +++ V + HARF A R Y Y I R+ Sbjct: 61 AHFDCERPVADPAQTVYKLNFLL--PGDIAVGSMTPVAEDAHARFHAREREYRYFIEPRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 P + W LD M AA L DFT+F ++ + I + Sbjct: 119 NP--FTRHETWQYYVPLDVGRMNEAAAMLTAYDDFTSFAKLNSNNKTNICRVKEAVWTID 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +RS VG+L VG G++T ++++D AP +GL Sbjct: 177 SRGTMCFTIRADRFLRNMVRSLVGTLVDVGRGRYTPDGFRSIVESRDLSRSSAGAPAQGL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLSDVVYP 244 >gi|297564067|ref|YP_003683040.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848516|gb|ADH70534.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 279 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q ++QG +E A+ V V + AGRTD+GVHA Q Sbjct: 6 VRVRLDVAYDGTDFSGWAAQPGRRTVQGELEAALARVLRLPEVSLTCAGRTDAGVHARGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA D+ + L + + + + F ARFS + R YLYR+ Sbjct: 66 VAQADIPARTWESEGERVLRRLAGVLPKDVRVRAARLAPPGFDARFSPLFRRYLYRVSDA 125 Query: 120 QAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + LD + M AA+ LVG HDF F + ++ IR + + Sbjct: 126 PYGVDPLLRRDVLWHRSPLDVDRMNAAAERLVGEHDFAAFCKRR-EGATTIRELLRLEWT 184 Query: 179 S-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +L+ + A +F H +R+ VG+L VGDG+ + K L A R + P+ Sbjct: 185 RVDEHLLHGTIQADAFCHNMVRALVGALLAVGDGRRDADWPGKVLGAGTRDSSVHVVGPQ 244 Query: 238 GLYFDSVEYS 247 GL + V Y Sbjct: 245 GLSLEEVRYP 254 >gi|46931324|gb|AAT06466.1| At1g09800 [Arabidopsis thaliana] Length = 372 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 142/316 (44%), Gaps = 70/316 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 55 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNV 114 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 115 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 174 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS- 167 R+Y YR+++ P LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA S Sbjct: 175 RTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSP 234 Query: 168 ---------------------PIRTI---------------------------------- 172 RT+ Sbjct: 235 MRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTG 294 Query: 173 -DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D F + +R FL+ Q+R VG+LK VG G+ T +D+E+ L+A+ Sbjct: 295 GDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAK 354 Query: 232 PLAPPEGLYFDSVEYS 247 P+AP GLY V Y Sbjct: 355 PMAPASGLYLARVRYE 370 >gi|327398248|ref|YP_004339117.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411] gi|327180877|gb|AEA33058.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411] Length = 241 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RYC I Y+G+ Y G+Q Q + ++QG IEKA+ + + ++ AGRTD+GVHA QV Sbjct: 1 MRYCACIAYDGTNYSGFQIQPDVKTVQGEIEKALKRIFKTDLRINFAGRTDAGVHAFEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F ++ + L KALN+ L + I I ++ IVD FH+R+SA R Y+Y + Sbjct: 61 IDFPVIADIETYSLKKALNSVL--PEDIRIKSVKIVDNSFHSRYSAKFREYVYFAFDGEY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 W + LD + MR+A++ VG DF +F + + + R + + + Sbjct: 119 LPPFLCRYVWHVKFKLDVDAMRLASRLFVGYKDF-SFVANEPEGKNCTREVYFLRIKRYR 177 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG L + ++ AP GL+ Sbjct: 178 EFVVFHIRAGGFLRGMVRNIVGLLVGYSANALQIDKSGNIIFSRG-NLKSFKAPACGLFL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 RRVAY 241 >gi|257784931|ref|YP_003180148.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469] gi|257473438|gb|ACV51557.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469] Length = 294 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 113/250 (45%), Gaps = 10/250 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G+ + G+ Q S+ G + +A+ V V + AGRTD+GVHA Q Sbjct: 40 IKLGYRGAAFCGFAEQPTQRSVAGDLRRALETVLRREVELTCAGRTDAGVHAQVQYVSLP 99 Query: 66 L---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + L ++L A D ISI L + F ARF A RSY YRI A Sbjct: 100 VYDADLSFSGEKLVRSLTAL--TDDDISIRQLFRAPQGFSARFDAQARSYRYRICADSAR 157 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSFG 181 L W LD + M AAQ LVG HDF +F + R ++ V Sbjct: 158 PILGWDHVWWYNGHLDADLMDKAAQALVGEHDFKSFCKAISAEGKPTHRFVERLSVEEIE 217 Query: 182 N----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 LI + + +FLH +R+ VG+L +G G +++ L A++R G AP + Sbjct: 218 EAGEKLIAVDITGNAFLHNMVRTIVGTLVEIGRGHRPVEWIDEVLAAKNRIAAGSCAPAQ 277 Query: 238 GLYFDSVEYS 247 GL F +V Y Sbjct: 278 GLTFVNVRYP 287 >gi|94984145|ref|YP_603509.1| tRNA pseudouridine synthase A [Deinococcus geothermalis DSM 11300] gi|94554426|gb|ABF44340.1| tRNA pseudouridine synthase A [Deinococcus geothermalis DSM 11300] Length = 266 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 124/252 (49%), Gaps = 11/252 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ ++G+ + GWQ Q++ S+Q ++ A+ +T E AGRTD+GVHA Sbjct: 14 RRLRLLLAWDGTDFAGWQAQRDVPSVQDTLYAALLRLTEEAARPVAAGRTDAGVHAEAMP 73 Query: 62 AHFDLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AH D+ + L +ALNA+L ++++L FHARFS R Y YR++ Sbjct: 74 AHVDVPQSFRIPAKKLARALNAHL--PPSVAVLEAEEAPTGFHARFSCTERRYTYRLLNT 131 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 L +GRA +P +LD M AA L+G HDF F + + +R + V+ Sbjct: 132 PQRHPLWRGRALHVPGALDVPAMNAAAACLLGTHDFAAFATR--EDRQTVRELRALAVHP 189 Query: 179 ----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 G + E+RV SFL +R VG+L LVG GK D+ L ++R G Sbjct: 190 GPVVPGGRIWEVRVAGESFLRQMVRGLVGTLLLVGQGKLGQEDVTAVLVGRERARAGANV 249 Query: 235 PPEGLYFDSVEY 246 P GL F Y Sbjct: 250 PGYGLTFTGASY 261 >gi|242243978|ref|ZP_04798421.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis W23144] gi|242232611|gb|EES34923.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis W23144] Length = 267 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ + + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSKIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDRNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|227539074|ref|ZP_03969123.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33300] gi|227241078|gb|EEI91093.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33300] Length = 257 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 8/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + I Y G+ Y GWQ Q N S+Q + + + + + GAGRTD+GVHA + Sbjct: 7 RFFLEIAYQGTAYHGWQIQHNAVSVQEKLNDVLKTLLRKDIETIGAGRTDTGVHARQLFV 66 Query: 63 HFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD + E P +LNA L I++ L V + HARF A RSY Y + + Sbjct: 67 HFDAIPEGLLLQPDKFVHSLNALL--PHDIAVYRLLPVVDEAHARFDATSRSYEYHLHFK 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-N 178 + P + +WL D M A Q+L+GR DF F + Q + I + Sbjct: 125 KDPFLIHA--SWLTRDIPDVAKMNEACQYLLGRQDFECFSKSNTQVFTNFCDISRAEWLW 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + + A FL +R+ VG+L +G +++ + ++ R + G P G Sbjct: 183 NTDDHLVFHISADRFLRNMVRAIVGTLLEIGLKGKEPVYIQEVIASKSRSKAGTSVPAHG 242 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 243 LYLTEVVYP 251 >gi|51971559|dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana] gi|51971573|dbj|BAD44451.1| unnamed protein product [Arabidopsis thaliana] Length = 368 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 142/316 (44%), Gaps = 70/316 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 51 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNV 110 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 111 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 170 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS- 167 R+Y YR+++ P LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA S Sbjct: 171 RTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSP 230 Query: 168 ---------------------PIRTI---------------------------------- 172 RT+ Sbjct: 231 MRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTG 290 Query: 173 -DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D F + +R FL+ Q+R VG+LK VG G+ T +D+E+ L+A+ Sbjct: 291 GDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAK 350 Query: 232 PLAPPEGLYFDSVEYS 247 P+AP GLY V Y Sbjct: 351 PMAPASGLYLARVRYE 366 >gi|332300500|ref|YP_004442421.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica DSM 20707] gi|332177563|gb|AEE13253.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica DSM 20707] Length = 262 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 10/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA + Sbjct: 6 QRVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQSISVTGAGRTDAGVHAYSMM 65 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH DL P+ + + L L+ IS+ +++ V HARF A R Y Y I Sbjct: 66 AHADLPIPHPPLAQIQRGLCGILR--GGISVRSVTPVIPTAHARFDATSRRYHYYISACS 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W D M A +H +G HDFT+F +H Q T+ Sbjct: 124 NP--FWSDYCWERRTLPDMALMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQV 181 Query: 181 G-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V A FLH +R+ VG+L VG G+ T + + +Q++DR G AP Sbjct: 182 EMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQSEDRSLAGSAAP 241 Query: 236 PEGLYFDSVEYS 247 L+F Y Sbjct: 242 ARALFFVEATYP 253 >gi|21673806|ref|NP_661871.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS] gi|42559829|sp|Q8KDR7|TRUA_CHLTE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21646936|gb|AAM72213.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS] Length = 247 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 112/251 (44%), Gaps = 9/251 (3%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R M IEY+G+GY GWQRQ + ++QG IE+ + + E V + GAGRTDSGV Sbjct: 1 MARSKRTIKMQIEYDGTGYSGWQRQPGDVVTVQGEIERVLERIMQEPVSIDGAGRTDSGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA RQVA F L + N+ L TI I + + FHARFSA R Y Y Sbjct: 61 HARRQVASFATCSPMPLGRLIYSANSLL--PSTIRINAMRQAPESFHARFSATSREYRYF 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ + P A++ A D M A L+G HDF F + T+ Sbjct: 119 LL--EHPSAIDSRFAGCSHGKPDVGAMNRLALMLIGTHDFAAFSKETPDQYGTLCTVTAA 176 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G R+ A FL + +R V + VG G+ + L++ R A Sbjct: 177 RWYRSGRFHVFRIEANRFLRSMVRFLVAGMIEVGMGRLEEGAFARMLESGHRPPKLKPAD 236 Query: 236 PEGLYFDSVEY 246 GL+ V Y Sbjct: 237 AAGLFLWKVRY 247 >gi|78357749|ref|YP_389198.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123754841|sp|Q30XU3|TRUA_DESDG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78220154|gb|ABB39503.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 278 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 87/272 (31%), Positives = 129/272 (47%), Gaps = 27/272 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ------KNG---SSIQGSIEKAIFLVTGEIVVVHGAGRT 51 M R +II Y G+ Y GWQ Q + ++Q ++E A + G V VHGAGRT Sbjct: 1 MARLKLIIAYAGTRYAGWQIQCLPAGRPHAVQQPTVQQAVEDAAKAILGSAVRVHGAGRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 DSGVHA QVAH D+ V +ALNA L + IS+L ++V FHARF A+++ Sbjct: 61 DSGVHAEGQVAHLDIPDAKAAVDWRRALNAKL--PEDISVLQAAVVPDGFHARFDAVKKR 118 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y YRI +A + ++ + LD M AA + G HDF +F++ + ++ +RT Sbjct: 119 YTYRIWLTRAFVLPQRRPFVHMTGPLDIAAMDAAAAFMTGTHDFASFQNAGTELATTVRT 178 Query: 172 IDHF---------DVNSFGN-------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + D + + A FL +R+ +G L G G+ Sbjct: 179 VYSITRTPGLAPDDFPRSHDTTPRAPLELAWHFEADGFLKQMVRNMMGLLLWTGTGRCAP 238 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 D+ + A+DR+ P AP GL + V Y Sbjct: 239 EDVPAIIAARDRRLSAPTAPACGLTMERVFYP 270 >gi|296168687|ref|ZP_06850436.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896596|gb|EFG76237.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 302 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 119/259 (45%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A+ + + + AGRTD+GVHA QV Sbjct: 27 VRLRLDIAYDGTEFAGWATQAGQRTVAGVLDEALTTLFRAPMRLRAAGRTDTGVHATGQV 86 Query: 62 AHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ + +P +A + + +L ++ F ARFSA+R Sbjct: 87 AHVDVPPDALPNAYPRAPRVGEPEFLPLVRRLGRFLPTDVRVLGIARAPAGFDARFSALR 146 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+ T + P+ LD + M A++ LVG HDF F A + Sbjct: 147 RHYTYRLSTAPYGVEPQRARYVTAWPRPLDVDAMAAASRDLVGLHDFAGFCRHRPNA-TT 205 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + D + G LI V A +F + +RS VG+L VG+ + + L A R Sbjct: 206 IRDLQGLDWSRDGELITAHVTADAFCWSMVRSLVGALLAVGEHRRPVSWCRGLLTATSRS 265 Query: 229 ECGPLAPPEGLYFDSVEYS 247 APP GL V+Y Sbjct: 266 SDFAAAPPHGLTLVGVDYP 284 >gi|212704912|ref|ZP_03313040.1| hypothetical protein DESPIG_02979 [Desulfovibrio piger ATCC 29098] gi|212671683|gb|EEB32166.1| hypothetical protein DESPIG_02979 [Desulfovibrio piger ATCC 29098] Length = 264 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 121/260 (46%), Gaps = 18/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R +++ Y+GS Y GWQ Q ++Q ++E A+ + G V V G+GRTD+GVHA Sbjct: 8 MRLRLLLAYDGSRYCGWQIQDIPTPPPTVQAAVEAAVGRIAGRPVRVFGSGRTDAGVHAH 67 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ R + ALNA L + +L FHAR SA+R++Y+Y Sbjct: 68 GQVAHCDVPR-RPGLDWRHALNALL--PADVRVLYWQEAAPDFHARISALRKTYVYDFWQ 124 Query: 119 RQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + W LD E MR A L+GRHDF +F++ + S +R + + Sbjct: 125 EKGFVPPRLAPFVWRS-GPLDAEAMRAALPFLLGRHDFASFQNAGTEMESTVRELQAATL 183 Query: 178 NSFG---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + + V A FL +R+ G L G K + L+A DR+ Sbjct: 184 TELPPVEFMPPCLPCLRLTVTANGFLKQMVRNMAGLLAAYGRHKLRPDQIPAILEAADRR 243 Query: 229 ECG-PLAPPEGLYFDSVEYS 247 P APP+GL VEY Sbjct: 244 ALPSPTAPPQGLALAHVEYP 263 >gi|164686559|ref|ZP_02210587.1| hypothetical protein CLOBAR_00126 [Clostridium bartlettii DSM 16795] gi|164604428|gb|EDQ97893.1| hypothetical protein CLOBAR_00126 [Clostridium bartlettii DSM 16795] Length = 201 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 105/203 (51%), Gaps = 3/203 (1%) Query: 44 VVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 V +GRTD+GVHAL QVA+F + L ALNA L ISI++ VD FHA Sbjct: 2 KVTASGRTDAGVHALGQVANFKTESKIPADRLPDALNAKL--PKDISIISCEEVDIDFHA 59 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 R++A ++Y Y I + L K ++ + LD + +R+ A+ L+G HDF F S Sbjct: 60 RYNACGKTYRYLIYNKPYRSPLYKDLSYHVRYDLDLDKIRLEAKSLIGTHDFGGFMSSGS 119 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RTI D+ +I I V FL+ +R VG+L +G G+ ++E+ + Sbjct: 120 SVKDTVRTIYDVDIQENDGMISIEVSGNGFLYNMVRIIVGTLVDIGRGRIK-HNMEEIIN 178 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 ++ R CG AP GL+ V Y Sbjct: 179 SKSRSMCGHTAPAHGLFLKKVNY 201 >gi|297201758|ref|ZP_06919155.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083] gi|197710867|gb|EDY54901.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083] Length = 289 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 120/253 (47%), Gaps = 8/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHA 57 +R + + Y+GS + GW +Q G ++QG IE A+ VT + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSDFSGWAKQAGGRRTVQGEIEDALRTVTRSKDVTYELTVAGRTDAGVHA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL K L ++ + + +L F+ARF+A+ R Y+YR+ Sbjct: 70 RGQVAHVDLPEGLWAEHRDKLLKRLAGRLPKDVRVWSLREAPAGFNARFAALWRRYVYRV 129 Query: 117 ITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + L + LD M AA+ LVG HDF + + ++ IR I F Sbjct: 130 GDQPGGVDPLLRNHVLWHDWELDVAVMDAAAKSLVGEHDFAAYAKRR-EGATTIREILDF 188 Query: 176 DVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V + ++EI V A +F H Q+RS VG+L VGDG K L A R + Sbjct: 189 GVRRRADGVVEIEVRADAFCHNQVRSMVGALLFVGDGHRGVEWPRKVLDAGVRDSAVHVV 248 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 249 RPHGLTLEEVAYP 261 >gi|306840229|ref|ZP_07473004.1| tRNA pseudouridine synthase A [Brucella sp. BO2] gi|306289834|gb|EFM61013.1| tRNA pseudouridine synthase A [Brucella sp. BO2] Length = 207 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 111/203 (54%), Positives = 141/203 (69%), Gaps = 1/203 (0%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHA 103 + AGRTD+GVHA QVAH DL ++W + A+NA+L + ISILN+ F A Sbjct: 1 MSAAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDA 60 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 RFSA R YLYRI R+APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ C Sbjct: 61 RFSARARHYLYRIHNRRAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQC 120 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 QA SP++T+D DV G++IE+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+ Sbjct: 121 QAKSPVKTLDRLDVTRNGDMIEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALE 180 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A+DRK CG +APP GLY V+Y Sbjct: 181 ARDRKACGQVAPPYGLYLVGVDY 203 >gi|300857811|ref|YP_003782794.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis FRC41] gi|300685265|gb|ADK28187.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis FRC41] gi|302205546|gb|ADL09888.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis C231] gi|308275782|gb|ADO25681.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis I19] Length = 291 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ ++Q +E ++ L+ + + AGRTD+GVHA Sbjct: 8 VRIRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELILRHPIQLTVAGRTDAGVHAAG 67 Query: 60 QVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ P L + L L + + + ++ + F ARFSA+RR Sbjct: 68 QVAHFDVPAIALDTRSIDGDPRNLVRRLARLL--PEDVRVHACTLAPEGFDARFSALRRH 125 Query: 112 YLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YR+ T L PK +D + M+ AA L+G HDF F H + ++ IR Sbjct: 126 YVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCK-HREGATTIR 184 Query: 171 TIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + L E V A +F + +RS VGS ++G+GK ++ L Sbjct: 185 DLQEFTWHDVSTSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEGKRPEGFVDSLLTET 244 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R P+AP +GL V+Y Sbjct: 245 SRSSQVPVAPAKGLSLVGVDYP 266 >gi|253582682|ref|ZP_04859903.1| tRNA pseudouridine synthase A [Fusobacterium varium ATCC 27725] gi|251835552|gb|EES64092.1| tRNA pseudouridine synthase A [Fusobacterium varium ATCC 27725] Length = 246 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 115/246 (46%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++GS ++G+QRQ ++QG IEK + +V E V + AGRTD GVHAL Q Sbjct: 5 MKNIKIRYRFDGSMFYGFQRQPGKRTVQGEIEKLLEVVLREKVNMISAGRTDRGVHALEQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L ALN L I I + VD F++RF A R Y Y I + Sbjct: 65 VSNFFTTSPIPVEKLKYALNKGL--PLDIEIFEVEEVDMNFNSRFFAKNRGYKYIISWVK 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E L+ + +D E + L+G HDF FR C + + IR I V Sbjct: 123 NP--FESRYVTLVREKIDKEIFFKILEPLIGVHDFNNFRLSDCGSKTSIREIYSIVVEEK 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + + + SFL +QIR +G+ + G + L L+ + +A P GLY Sbjct: 181 ENKLIVEIKGNSFLKSQIRIIIGTALDIYFGNYDENHLRDMLENPKKDFLKKVADPYGLY 240 Query: 241 FDSVEY 246 + Y Sbjct: 241 LSEINY 246 >gi|54022806|ref|YP_117048.1| tRNA pseudouridine synthase A [Nocardia farcinica IFM 10152] gi|62901243|sp|Q5Z1K7|TRUA_NOCFA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54014314|dbj|BAD55684.1| putative tRNA pseudouridine synthase [Nocardia farcinica IFM 10152] Length = 257 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 17 GWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILC 76 GW RQ ++QG +E A+ V E + + AGRTD+GVHA QVAHFD E+ L Sbjct: 2 GWARQPGLRTVQGVLEDALGKVLREPIQLTVAGRTDAGVHAEGQVAHFDTAAEFDGPQLV 61 Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPK 135 L +L + + +V F ARFSAIRR Y+YR+ T L Sbjct: 62 HRLARFL--PKDVRVKRADVVPPDFDARFSAIRRHYVYRLTTAPYGAEPLAARSVVPCKS 119 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 ++D + MR A+ L+G HDF F + ++ +R + FD G+L+ V A +F Sbjct: 120 AVDVDAMRRASGLLLGLHDFAAFCRRR-EGATTVRELQRFDWERQGDLLLAHVSADAFCW 178 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +RS VG++ VG+G+ + + L+ R +AP GL +V+Y Sbjct: 179 SMVRSLVGAVLAVGEGRRSPEWVAGLLRETQRSSSVTVAPAHGLSLVAVDYP 230 >gi|259506738|ref|ZP_05749638.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] gi|42559821|sp|Q8FS31|TRUA_COREF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259165679|gb|EEW50233.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] Length = 282 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 132/262 (50%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + ++Y+G+ + GW RQ + ++Q +E + +V V + AGRTD+GVHA Sbjct: 1 MRIRLDLDYDGTDFHGWARQGDSDLRTVQKVLEDNLGMVLRAPVELTVAGRTDAGVHAAG 60 Query: 60 QVAHFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ R + P L + L+ L + I + ++ + F ARFSA+RR Sbjct: 61 QVAHFDIPRESLQQRSIDGDPTKLVRRLSRLL--PEDIRVHGVNYAPEGFDARFSALRRH 118 Query: 112 YLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YRI T A PL PK +D + M+ AA L+G HDF F A S +R Sbjct: 119 YVYRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVLIGLHDFVAFCKAKPNA-STVR 177 Query: 171 TIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + + L E VVA +F + +RS VGS VG+G+ + L A Sbjct: 178 ELQEFTWHDVSTPTEPQLYEAHVVADAFCWSMVRSLVGSCMAVGEGRRAGDFTAQLLTAT 237 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 +R P+AP +GL V+Y Sbjct: 238 ERSPDVPVAPAKGLSLVGVDYP 259 >gi|302330101|gb|ADL20295.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis 1002] Length = 319 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ ++Q +E ++ L+ + + AGRTD+GVHA Sbjct: 36 VRIRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELILRHPIQLTVAGRTDAGVHAAG 95 Query: 60 QVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ P L + L L + + + ++ + F ARFSA+RR Sbjct: 96 QVAHFDVPAIALDTRSIDGDPRNLVRRLARLL--PEDVRVHACTLAPEGFDARFSALRRH 153 Query: 112 YLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YR+ T L PK +D + M+ AA L+G HDF F H + ++ IR Sbjct: 154 YVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCK-HREGATTIR 212 Query: 171 TIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + L E V A +F + +RS VGS ++G+GK ++ L Sbjct: 213 DLQEFTWHDVSTSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEGKRPEGFVDSLLTET 272 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R P+AP +GL V+Y Sbjct: 273 SRSSQVPVAPAKGLSLVGVDYP 294 >gi|189023111|ref|YP_001932852.1| tRNA pseudouridine synthase A [Brucella abortus S19] gi|189021685|gb|ACD74406.1| tRNA pseudouridine synthase [Brucella abortus S19] Length = 207 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 110/203 (54%), Positives = 141/203 (69%), Gaps = 1/203 (0%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHA 103 + AGRTD+GVHA QVAH DL ++W + A+NA+L + ISILN+ F A Sbjct: 1 MSAAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDA 60 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 RFSA R YLYRI R+APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ C Sbjct: 61 RFSARARHYLYRIHNRRAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQC 120 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 QA SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+ Sbjct: 121 QAKSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALE 180 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A+DRK CG +APP GLY V+Y Sbjct: 181 ARDRKACGQVAPPYGLYLVGVDY 203 >gi|306838494|ref|ZP_07471334.1| tRNA pseudouridine synthase A [Brucella sp. NF 2653] gi|306406426|gb|EFM62665.1| tRNA pseudouridine synthase A [Brucella sp. NF 2653] Length = 207 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 110/203 (54%), Positives = 140/203 (68%), Gaps = 1/203 (0%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHA 103 + AGRTD+GVHA QVAH DL ++W + A+NA+L + ISILN+ F A Sbjct: 1 MSAAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDA 60 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 RFSA R YLYRI R+APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ C Sbjct: 61 RFSARARHYLYRIHNRRAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQC 120 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 QA SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+ Sbjct: 121 QAKSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALE 180 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A+DRK CG +APP GLY V+Y Sbjct: 181 ARDRKACGQVAPPYGLYLVGVDY 203 >gi|228470580|ref|ZP_04055437.1| tRNA pseudouridine synthase A [Porphyromonas uenonis 60-3] gi|228307707|gb|EEK16683.1| tRNA pseudouridine synthase A [Porphyromonas uenonis 60-3] Length = 262 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 119/252 (47%), Gaps = 10/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA + Sbjct: 6 QRVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQPISVTGAGRTDAGVHAYSMM 65 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH DL P+ + + L L+ IS+ +++ V HARF A R Y Y I Sbjct: 66 AHADLPIPHPPLAQIQRGLCGILR--GGISVRSVTPVIPTAHARFDATSRRYHYYISACS 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W D E M A +H +G HDFT+F +H Q T+ Sbjct: 124 NP--FWGDYCWERRTLPDMELMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQV 181 Query: 181 G-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V A FLH +R+ VG+L VG G+ T + + +Q +DR G AP Sbjct: 182 EMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQREDRTLAGSAAP 241 Query: 236 PEGLYFDSVEYS 247 L+F Y Sbjct: 242 ARALFFVEATYP 253 >gi|256827610|ref|YP_003151569.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641] gi|256583753|gb|ACU94887.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641] Length = 273 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 122/258 (47%), Gaps = 14/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M ++I YNG+ + G+ RQ+ ++QGS+E+A+ L+ V AGRTD+GVHA Sbjct: 1 MATIALLISYNGAPFHGFARQEGDLLTVQGSLEEALSLLYRREVETVCAGRTDTGVHARG 60 Query: 60 QVAHFDLV----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV F++ P L ++LNA D I I L F ARF A R Y Y Sbjct: 61 QVVTFEVTPEELASHTPHSLIRSLNALTH--DAIGIRQLRRAPDGFSARFDAKSRHYRYF 118 Query: 116 IITRQAPLALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTI 172 I P + + W + SLD M AA +LVG HDF +F ++ R + Sbjct: 119 ISDGSVPPLVMRDFCWQVRGGVSLDANAMTAAAAYLVGEHDFKSFCLAVSAAGKPTRREV 178 Query: 173 DHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 V ++ I ++ SFLH+ +R+ G+L VG G + + + L A DR Sbjct: 179 LSLTVERIEVLGDEVVCIDIIGSSFLHSMVRTIAGTLVAVGRGLRPPSWMAEVLAACDRT 238 Query: 229 ECGPLAPPEGLYFDSVEY 246 G AP GL F V+Y Sbjct: 239 AAGEKAPAAGLVFWDVDY 256 >gi|300727110|ref|ZP_07060529.1| tRNA pseudouridine synthase A [Prevotella bryantii B14] gi|299775654|gb|EFI72245.1| tRNA pseudouridine synthase A [Prevotella bryantii B14] Length = 259 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 119/263 (45%), Gaps = 21/263 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---------IVVVHGAGRT 51 M RY +I Y+G+ Y GWQ Q NG+S+Q ++ A+ L + V GAGRT Sbjct: 1 MHRYFIIFAYDGTNYHGWQIQPNGNSVQAELQHALALSLRSFLLLKSNDFEIEVVGAGRT 60 Query: 52 DSGVHALRQVAHFDLVREWVP-------VILCKALNAYLKISDTISILNLSIVDKQFHAR 104 D+GVHA + AHF+L E P + +N L IS+ ++ V+ HAR Sbjct: 61 DAGVHARQMAAHFELSEEEFPLLDESKCKQIVYRINRIL--PRDISVSDVYPVESDMHAR 118 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 FSA R+Y Y I T + P + + LD + M + ++ DF F Sbjct: 119 FSAKWRTYHYYIHTDKNP--FLRFYSLETHYPLDFDLMNEGGKIIMEHQDFAAFCKAGAD 176 Query: 165 ASSPIRTIDHF-DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + + V + + + A FL +R+ VG+L L+G K T DL L Sbjct: 177 NKTTLCDVTECKWVQTSPTSWYLTITANRFLRNMVRAVVGTLFLLGRHKITLDDLRVILH 236 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 +R + G P L+ + VEY Sbjct: 237 EGNRSKAGESMPGNALFLEKVEY 259 >gi|194336595|ref|YP_002018389.1| tRNA pseudouridine synthase A [Pelodictyon phaeoclathratiforme BU-1] gi|259550418|sp|B4SA76|TRUA_PELPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|194309072|gb|ACF43772.1| tRNA pseudouridine synthase A [Pelodictyon phaeoclathratiforme BU-1] Length = 243 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 113/247 (45%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + +EY+G+ + GWQRQ ++QG IE A+ + E + + AGRTD GVHA Sbjct: 1 MKNIRVTVEYDGTSFAGWQRQSGAIVTVQGEIEVALGKILQEKISLAAAGRTDKGVHARA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A+F P + +LN+ L TI I N VD FHAR SA R Y Y +I Sbjct: 61 QTANFFTASSLEPSRIVHSLNSLL--PQTIRISNPEEVDADFHARHSAKERQYRYFLI-- 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A+ A LD M+ A LVG HDF+ F I ++ Sbjct: 117 EEPSAIYGRFAGCSFGKLDVAIMQQMAAILVGTHDFSAFSKEDRDNPGRICSVTACKWYP 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + +R+ A FL + +R V ++ G G+ + D + L+ A P GL Sbjct: 177 CKHYLVLRISADRFLRSMVRYLVDAMIRAGKGRLSVGDFCRMLETGVTTSQLNPALPAGL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLWDVLY 243 >gi|332159317|ref|YP_004424596.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2] gi|331034780|gb|AEC52592.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2] Length = 263 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 119/247 (48%), Gaps = 24/247 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + G+QRQ N +++G I KA+ E A RTD GV AL V Sbjct: 1 MRVALKIAYDGTKFHGFQRQPNIRTVEGEIIKALNNSGIEYSDFKSASRTDKGVSALGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 E + LNA L + + IL+ V FH RF A + Y Y + + Sbjct: 61 VAITTEDEKALNPMV--LNARL---EDVWILSAIEVPPDFHPRFWAKSKVYRYYLPS--- 112 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 LD E ++ +Q +G HDF+ F + IR+ID +V G Sbjct: 113 -------------IGLDVERVKECSQLFLGVHDFSAFSKV--DERDTIRSIDRIEVLVLG 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLY 240 ++ I + A+SFL +R V +L+L G GK ++ D+++ L+ + ++ + P APPEGL Sbjct: 158 PILVIEIEAKSFLWEMVRRIVKALELCGLGKLSAEDVKEMLEGKFNKSKKVPPAPPEGLL 217 Query: 241 FDSVEYS 247 V+Y Sbjct: 218 LVDVKYE 224 >gi|324999254|ref|ZP_08120366.1| tRNA pseudouridine synthase a [Pseudonocardia sp. P1] Length = 268 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 115/249 (46%), Gaps = 9/249 (3%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I Y+G+ + GW Q ++QG + A+ V + + AGRTD+GVHA QVAH Sbjct: 2 RLDIAYDGTDFSGWATQPTRRTVQGVLTDALSTVLRTPLRLTVAGRTDAGVHASGQVAHV 61 Query: 65 DLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 D+ E P L + LN +L + + + V + F ARFSA+RR Y YR+ T Sbjct: 62 DVPAELDPQLDGLLRRLNRFL--PPDVRVRATTRVPETFDARFSALRRHYRYRVTTASFG 119 Query: 123 L-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-- 179 L P LD M A+ +VG HDF F + ++ +R + F+ + Sbjct: 120 AEPLRARETVAWPHPLDPALMNAASALMVGEHDFAAFCKRR-EGATTVRALQRFEWDPAP 178 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++ V A +F H+ +RS VG++ VG + L R +APP G Sbjct: 179 GEPGVLVASVSADAFCHSMVRSLVGAVFEVGRVHRPPEWPAELLSRTSRASEVTVAPPHG 238 Query: 239 LYFDSVEYS 247 L V+Y Sbjct: 239 LSLTGVDYP 247 >gi|163783710|ref|ZP_02178697.1| pseudouridine synthase I [Hydrogenivirga sp. 128-5-R1-1] gi|159881035|gb|EDP74552.1| pseudouridine synthase I [Hydrogenivirga sp. 128-5-R1-1] Length = 239 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 7/245 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + + G+ Y GWQ Q ++QG++++A+ V GE + V G RTD+GVHA Sbjct: 1 MNNYMLRLAFVGTNYSGWQIQPGVPTVQGTLKEALETVFGEEIRVIGCCRTDAGVHAEDY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ++E L +ALN+ L I + + +VD+ F++R+S ++YLYR+ Sbjct: 61 VANFRSIKELECEKLLRALNSLL--PKDIGVYEVKLVDENFNSRYSVKGKTYLYRLWNSF 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +W + + +D + A + + GRHDF F + ++ I V+ Sbjct: 119 VRNPFLYPFSWSVTRRVDLNLLSEALEIVSGRHDFRGFAKLEEDKTTVIELETKLAVS-- 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LIE+R A FL +R VG++ +GK ++ +L + L+ + C AP +GL Sbjct: 177 GDLIELRFTASHFLRYMVRRLVGAIVKRAEGKVSTGELYEYLKGK---HCPHTAPAKGLT 233 Query: 241 FDSVE 245 + V Sbjct: 234 LERVH 238 >gi|229821589|ref|YP_002883115.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333] gi|229567502|gb|ACQ81353.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333] Length = 286 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 116/258 (44%), Gaps = 14/258 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW RQ ++QG +E+A+ V E + AGRTD+GVHA Q Sbjct: 6 RVRLDLAYDGAAFAGWARQPGLRTVQGDLEEALGRVLRLPEPPRLTVAGRTDAGVHARGQ 65 Query: 61 VAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRS 111 VAH DL RE AL L + + + +++ F ARFSAI R Sbjct: 66 VAHVDLPREAYLAAPGRSERDPGAALRTRLAGVLPPDVVVGHVAPAPPGFDARFSAIWRR 125 Query: 112 YLYRI-ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y YR+ L +G + LD M AA+ L+G HDF F + ++ IR Sbjct: 126 YAYRVADDGALHDPLRRGWTVWHRRPLDVVAMDAAARRLLGEHDFAAFCRPR-EGATTIR 184 Query: 171 TIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ L+ V A +F H+ +R+ VG+ VG+ + L A R Sbjct: 185 TLQELTWVRDDAGLLVAHVRADAFCHSMVRALVGACLAVGESRREVGWPRAVLDAARRDS 244 Query: 230 CGPLAPPEGLYFDSVEYS 247 +AP GL + + Y Sbjct: 245 AVQVAPAHGLVLEEIGYP 262 >gi|189501513|ref|YP_001957230.1| tRNA pseudouridine synthase A [Candidatus Amoebophilus asiaticus 5a2] gi|189496954|gb|ACE05501.1| tRNA pseudouridine synthase A [Candidatus Amoebophilus asiaticus 5a2] Length = 253 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 9/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ Y GWQ Q+N +S+Q I+K + + + + G+ RTD+GVHA +Q Sbjct: 1 MRYFLEIAYQGTHYHGWQIQQNATSVQAVIQKKLTQLLSTNIEIVGSSRTDTGVHAQQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH D+ L LN L + I+IL + V H+RF A+ R+Y+Y+I + Sbjct: 61 AHVDMPFTIDIDKLKYKLN--LIVPSDIAILGIHPVLPTAHSRFDALSRTYVYKISCTKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDV 177 P + ++ + LD E M AA L +F +F + + I Sbjct: 119 P--FMQATTYVFRRVLDLEKMNEAAAILKIYKNFESFSKVGSITDHTLYPNLCNIIEAHW 176 Query: 178 NS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ + + ++ A FL +R+ VG+L VG GK + D E L +DR L P Sbjct: 177 STGSNDQLIFQITANRFLRGMVRAIVGNLLEVGLGKCSVKDFEYTLVQKDRNLAASLVPA 236 Query: 237 EGLYFDSVEYS 247 GL +V Y Sbjct: 237 CGLTLVNVTYP 247 >gi|120603116|ref|YP_967516.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris DP4] gi|166228695|sp|A1VF73|TRUA_DESVV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120563345|gb|ABM29089.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris DP4] Length = 297 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 87/292 (29%), Positives = 121/292 (41%), Gaps = 48/292 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ GWQ Q++ ++QG +E + + GE V +H AGRTD+GV Sbjct: 1 MARLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + V KA+NA L D I IL++ FHARF A+ + Y YR Sbjct: 61 HADGQVAHVDIPDHKLDVDWQKAINAQL--PDDICILDVRRAADDFHARFDALGKRYTYR 118 Query: 116 II-TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + TR+ G+ W LD M AA+HL G HDF F++ +S +RT+ Sbjct: 119 LWLTRRFIPPKLHGQVWAT-GPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHA 177 Query: 175 FDVNSFGNL---------------------------------------IEIRVVARSFLH 195 G L + FL Sbjct: 178 IRRCPSGTLPAGALLTYGEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLK 237 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +R+ +G L VG G + D+ + DR AP GL V Y Sbjct: 238 QMVRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYP 289 >gi|46579324|ref|YP_010132.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. Hildenborough] gi|51316681|sp|Q72DL8|TRUA_DESVH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46448738|gb|AAS95391.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. Hildenborough] gi|311233151|gb|ADP86005.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris RCH1] Length = 297 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 87/292 (29%), Positives = 121/292 (41%), Gaps = 48/292 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ GWQ Q++ ++QG +E + + GE V +H AGRTD+GV Sbjct: 1 MARLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + V KA+NA L D I IL++ FHARF A+ + Y YR Sbjct: 61 HADGQVAHVDIPDHKLGVDWQKAINAQL--PDDICILDVRRAADDFHARFDALGKRYTYR 118 Query: 116 II-TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + TR+ G+ W LD M AA+HL G HDF F++ +S +RT+ Sbjct: 119 LWLTRRFIPPKLHGQVWAT-GPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHA 177 Query: 175 FDVNSFGNL---------------------------------------IEIRVVARSFLH 195 G L + FL Sbjct: 178 IRRCPSGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLK 237 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +R+ +G L VG G + D+ + DR AP GL V Y Sbjct: 238 QMVRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYP 289 >gi|257064823|ref|YP_003144495.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476] gi|256792476|gb|ACV23146.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476] Length = 271 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 123/257 (47%), Gaps = 15/257 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y+G+ + G+ RQ ++QG +E A+ ++ V AGRTD+GVHA+ Q Sbjct: 17 LACKVAYDGAPFAGFARQAECDRVMTVQGELEHALRVLYRRDVRTTCAGRTDAGVHAIGQ 76 Query: 61 VAHFDLVRE----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 V FD+ + P L ++LNA + D +S+ + F ARF A R Y YRI Sbjct: 77 VVSFDVTEDEFASRTPRSLLRSLNAL--VDDHMSVSVVEEKPFGFSARFDAKWREYRYRI 134 Query: 117 ITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDH 174 T A L W + LD + M AA HL+G HDF +F R + Sbjct: 135 STAAARPVLIMPLVWHLGGVDLDIDAMNRAAVHLIGEHDFKSFCVAASAVGKPTCRNVME 194 Query: 175 FDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +V + +RVV +FLH+ +R+ VG+L VG G+ + L+A++R Sbjct: 195 LEVFEEEILGQQVATVRVVGNAFLHSMVRTIVGTLVEVGRGRRNPEWVCDVLEARNRGAA 254 Query: 231 GPLAPPEGLYFDSVEYS 247 G AP +GL F VEY Sbjct: 255 GQNAPAQGLVFWHVEYE 271 >gi|25027130|ref|NP_737184.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] gi|23492410|dbj|BAC17384.1| putative tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] Length = 300 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 132/262 (50%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + ++Y+G+ + GW RQ + ++Q +E + +V V + AGRTD+GVHA Sbjct: 19 VRIRLDLDYDGTDFHGWARQGDSDLRTVQKVLEDNLGMVLRAPVELTVAGRTDAGVHAAG 78 Query: 60 QVAHFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ R + P L + L+ L + I + ++ + F ARFSA+RR Sbjct: 79 QVAHFDIPRESLQQRSIDGDPTKLVRRLSRLL--PEDIRVHGVNYAPEGFDARFSALRRH 136 Query: 112 YLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YRI T A PL PK +D + M+ AA L+G HDF F A S +R Sbjct: 137 YVYRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVLIGLHDFVAFCKAKPNA-STVR 195 Query: 171 TIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + + L E VVA +F + +RS VGS VG+G+ + L A Sbjct: 196 ELQEFTWHDVSTPTEPQLYEAHVVADAFCWSMVRSLVGSCMAVGEGRRAGDFTAQLLTAT 255 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 +R P+AP +GL V+Y Sbjct: 256 ERSPDVPVAPAKGLSLVGVDYP 277 >gi|166032002|ref|ZP_02234831.1| hypothetical protein DORFOR_01704 [Dorea formicigenerans ATCC 27755] gi|166028455|gb|EDR47212.1| hypothetical protein DORFOR_01704 [Dorea formicigenerans ATCC 27755] Length = 310 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 9/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVH 56 M + IEY+GS Y GW R ++ ++I I + +TGE + ++ RT+ GVH Sbjct: 66 MRNIKITIEYDGSRYQGWTRLGKDESNNTISAKIIDVLGKMTGEKNIELNCGCRTEVGVH 125 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QVA+F + LN YL I+I + V +FHA+ +A+ ++Y+YR+ Sbjct: 126 AYAQVANFKTSSNLSTKDIQHYLNRYL--PMDIAITEVEEVPDRFHAQLNAVSKTYVYRM 183 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P E+ + K+ D + M+ AA +G HDF F + ++ + R + D Sbjct: 184 TIMDVPSVFERKHTYHCFKTPDKKAMQQAALLFIGEHDFRNFSTAK-KSKNTTREVYDID 242 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ++I + A FLH R +G+L +G G D+E + K G P Sbjct: 243 IYGDNEEMQILIQADDFLHNMARLMIGTLLDIGFGLRKKEDIEAIFNGE--KAVGNPCDP 300 Query: 237 EGLYFDSVEY 246 +GLY VEY Sbjct: 301 KGLYLQEVEY 310 >gi|227505250|ref|ZP_03935299.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940] gi|227198149|gb|EEI78197.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940] Length = 285 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 123/261 (47%), Gaps = 18/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQK ++QG +E + ++ V + AGRTD+GVH+ Q Sbjct: 4 VRLRLDLAYDGTDFHGWARQKGDLRTVQGVLEDNLSMILRHDVELTVAGRTDAGVHSAGQ 63 Query: 61 VAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAHFD+ E P L + L L + + + + + F ARFSA++R Y Sbjct: 64 VAHFDVPSEALDQRSIDGDPAKLVRRLAKLL--PEDVRVHACTAAPEGFDARFSALQRHY 121 Query: 113 LYRIITRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 +YRI T + R PK +D + M+ AA LVG HDF F A + IR Sbjct: 122 VYRITTHPRGALPTRARDTAQWPKPVDIDAMQEAATTLVGLHDFAAFCKAKPHA-TTIRD 180 Query: 172 IDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + F+ + L E RV A +F + +RS VG VG+G L Sbjct: 181 LHSFEWVDVSTPTEPQLYEARVCADAFCWSMVRSLVGCCLRVGEGARDVDFATAMLAESQ 240 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R PLAP +GL V+Y Sbjct: 241 RSSQIPLAPAKGLSLVRVDYP 261 >gi|258651414|ref|YP_003200570.1| tRNA pseudouridine synthase A [Nakamurella multipartita DSM 44233] gi|258554639|gb|ACV77581.1| tRNA pseudouridine synthase A [Nakamurella multipartita DSM 44233] Length = 305 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 78/263 (29%), Positives = 125/263 (47%), Gaps = 18/263 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I Y+G+ + GW Q ++ G + A+ + V + AGRTD+GVHA QV Sbjct: 26 RRLRLDISYDGTDFAGWAIQPGLRTVAGELTSALTTIVRTPVRLVVAGRTDAGVHAAGQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKI----------------SDTISILNLSIVDKQFHARF 105 AH DL + + ++ + + + + + + F ARF Sbjct: 86 AHVDLPQAALLTVIPRDRADHPDPERAGRLGLLRRLGGLLPPDVRVRAVLAAPEGFDARF 145 Query: 106 SAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+RR Y YRI T + + ++ + ++LD E M +AAQ LVG HDF F + Sbjct: 146 SALRRRYRYRIGTAEWGVEPADRRFVYARRRTLDVEAMTLAAQALVGLHDFHAFCRPR-E 204 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + V G+ + I VVA +F H+ +R+ VGSL VG+ + + + L A Sbjct: 205 GATTIRDLQKLTVTRAGDEVRIDVVADAFCHSMVRALVGSLLAVGELRMPTARPAELLAA 264 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 +R +AP GL V+Y Sbjct: 265 GERTSAFAVAPAHGLSLVGVDYP 287 >gi|118473191|ref|YP_885908.1| tRNA pseudouridine synthase A [Mycobacterium smegmatis str. MC2 155] gi|118174478|gb|ABK75374.1| tRNA pseudouridine synthase A [Mycobacterium smegmatis str. MC2 155] Length = 291 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 118/259 (45%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G I++A+ V VV AGRTD+GVHA QV Sbjct: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALTTVFRTPVVTRVAGRTDTGVHATGQV 70 Query: 62 AHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ E +P + + + + ++ F ARFSA+R Sbjct: 71 AHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALR 130 Query: 110 RSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y+YR+ T P E + LD + M AAQ L+G +DF F ++ Sbjct: 131 RHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRA-GATT 189 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + + G I V A +F +RS VG+L VG+G+ + + L A R Sbjct: 190 IRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSRS 249 Query: 229 ECGPLAPPEGLYFDSVEYS 247 P AP GL +V+Y Sbjct: 250 SEFPAAPARGLTLAAVDYP 268 >gi|330837397|ref|YP_004412038.1| tRNA pseudouridine synthase A [Spirochaeta coccoides DSM 17374] gi|329749300|gb|AEC02656.1| tRNA pseudouridine synthase A [Spirochaeta coccoides DSM 17374] Length = 299 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 92/252 (36%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R M + Y+G+GY GWQ Q+N S+Q IE A++ +TG V V G+GRTDSGVHAL QV Sbjct: 20 RRVRMTVAYDGTGYSGWQHQRNAPSVQAEIEDALYRLTGHSVTVVGSGRTDSGVHALGQV 79 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFDL E P V+ +ALNA+L I I++ + FHARFSA+ R Y Y I Sbjct: 80 CHFDLPDERFPAVVFKRALNAFL--PPAIRIMDSEETNDSFHARFSAMAREYRYLIKREA 137 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDVN 178 + GR W++ + E ++ A + G HDFTTF + R I F V Sbjct: 138 DMTPFDSGRVWVVKELPSLELLKAHAAEIAGTHDFTTFTAAGDMCERRHRDIYVSDFSVE 197 Query: 179 SF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ + +FL+ +RS VG+L + G +T+ + L A+DR + G A Sbjct: 198 KDIHGAEVLVYTICGNAFLYKMVRSIVGTLFFLVLGGVPATETARRLAARDRSQAGRTAS 257 Query: 236 PEGLYFDSVEYS 247 GLY + + Sbjct: 258 AHGLYLSRISFD 269 >gi|108804942|ref|YP_644879.1| tRNA pseudouridine synthase A [Rubrobacter xylanophilus DSM 9941] gi|108766185|gb|ABG05067.1| tRNA pseudouridine synthase A [Rubrobacter xylanophilus DSM 9941] Length = 257 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 115/245 (46%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++EY+G+G+ GW RQ +++G + +A+ V V + AGRTD+GVHA QV Sbjct: 1 MRLAGLVEYDGAGFSGWARQPGRRTVEGELSRALETVLRHPVRLTAAGRTDAGVHASGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD P L +A L S+ +++ F AR A RSY YRI+ Sbjct: 61 VSFDARDGTDPGTLAYKASAVL--SEDVALRRCVAAPPGFDARRDAASRSYEYRIVNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + RA + LD + AA+ ++G HDF F R + G Sbjct: 119 RSPLRRRRAVHVGYRLDERLLGEAARRVLGVHDFRAFTPAKSHHVRFERAVSESRWERCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ R+ A +FL+ +R+ VG++ V G+ E+ L R E GP AP GL Sbjct: 179 DLLVYRITADAFLYNMVRALVGTMLEVARGRRDLASFEELLGGARRAEGGPTAPARGLTL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VRVRY 243 >gi|315655839|ref|ZP_07908737.1| tRNA pseudouridine synthase A [Mobiluncus curtisii ATCC 51333] gi|315489903|gb|EFU79530.1| tRNA pseudouridine synthase A [Mobiluncus curtisii ATCC 51333] Length = 314 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 87/273 (31%), Positives = 129/273 (47%), Gaps = 28/273 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA QV Sbjct: 18 MRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALAVIYRQTVELTVAGRTDAGVHASGQV 77 Query: 62 AHFDLV----REWVPVILCKALNAYL------------------KISDTI---SILNLSI 96 AHF + R P L L A L + + + + Sbjct: 78 AHFTVPEVGDRIVPPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAVDALVVTTAMV 137 Query: 97 VDKQFHARFSAIRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V + F ARFSA+ R Y+YRI+ L + W P LD M +A L+G HDF Sbjct: 138 VPETFDARFSALARHYVYRIVDDLAVRNPLCRNYCWWYPTPLDAAAMNASAAVLLGEHDF 197 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F + ++ IRT+ + ++EIRV A +F H+ +RS VG+L VG K Sbjct: 198 AAFCKPR-EGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRD 256 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L AL A+ R P+AP GL V+Y Sbjct: 257 TVWLADALAAKARIPEIPVAPALGLTLTQVDYP 289 >gi|293977793|ref|YP_003543223.1| pseudouridylate synthase I [Candidatus Sulcia muelleri DMIN] gi|292667724|gb|ADE35359.1| pseudouridylate synthase I [Candidatus Sulcia muelleri DMIN] Length = 250 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y+G+ ++GWQ QK S+Q +IE + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ + + + + I I+N+ V K+ HARF+AI R Y YRI + Sbjct: 61 AHFEFYEKKILLYRNFLFKLNSFLPLNIKIINIFPVKKKIHARFTAISRVYEYRISLGKN 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +L WL + + + + A+ L D+++F C + I I + + Sbjct: 121 PFSL--SWQWLSKQKIKLKPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHIKN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ + A +L +RS VG+L +G GK T D L A+DR AP +GL+ Sbjct: 179 NILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRNLALISAPAKGLFL 238 Query: 242 DSVEYS 247 + Y Sbjct: 239 TKINYP 244 >gi|229815740|ref|ZP_04446065.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM 13280] gi|229808656|gb|EEP44433.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM 13280] Length = 292 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 109/251 (43%), Gaps = 11/251 (4%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y+G+ + G+ Q G ++ G + +A+ + V + AGRTD+GVHA+ Q Sbjct: 36 FRLGYDGAAFSGFAEQPEGLRTVAGEVRRALETILRRPVDLTCAGRTDAGVHAVSQYVSI 95 Query: 65 DLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + +A+ A L I++ + F ARF A R+Y YRI+T A Sbjct: 96 PAHADELAITHARWMRAMAALL--PSDIALNAVYHARPGFSARFDARSRTYTYRIVTGDA 153 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFDVNS- 179 L + W LD + M AA LVG HDF +F R + Sbjct: 154 RPLLTRSVTWWHRLPLDMDAMERAAACLVGEHDFKSFCKTSSAIDKPTCRNVIAVSFERA 213 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I + +FLH+ +R+ VGSL VG G+ L AL A DR+ GP AP Sbjct: 214 SALGEEHIAFTITGNAFLHSMVRTIVGSLVEVGAGRRDERWLSDALAACDRRAAGPTAPA 273 Query: 237 EGLYFDSVEYS 247 GL F V Y Sbjct: 274 RGLCFMDVAYD 284 >gi|325262993|ref|ZP_08129729.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324032087|gb|EGB93366.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 244 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 122/249 (48%), Gaps = 8/249 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M +++EY+G+ Y GWQR G +++ + + I +T E V + RT+ GVHA Sbjct: 1 MHNIKLVLEYDGARYQGWQRLGKGESTNTVANKLLEVIHKMTAEDVELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + + + LN YL I++L+ + ++FHA +A R+Y YRI Sbjct: 61 YGQVVNFKTTSDMKTDEIRQYLNRYL--PMDIAVLSAEEMPERFHASLNAKSRTYQYRIA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + ++ D M+ AA L GRHDF F ++ ++ S + I + D+ Sbjct: 119 IGAVPSVFNRKYTYYAFRTPDIGIMQQAALLLAGRHDFKNFSTVK-KSKSTEKEIYNIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I+I + A FLH R +G+L +G GK +E + ++ E P+ Sbjct: 178 YGDTDEIQISLRANDFLHNMPRMIIGTLMDIGLGKRKMECIEAIFKGEE--EASAPCDPK 235 Query: 238 GLYFDSVEY 246 G++ +V Y Sbjct: 236 GMFLKNVGY 244 >gi|313887179|ref|ZP_07820875.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica PR426713P-I] gi|312923408|gb|EFR34221.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica PR426713P-I] Length = 262 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 10/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA + Sbjct: 6 QRVFLEVAYDGTNYCGWQVQSRGVSVQSELERALSILFRQPISVTGAGRTDAGVHAYSMM 65 Query: 62 AHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH DL P+ + + L L+ IS+ +++ V HARF A R Y Y I Sbjct: 66 AHADLPIPHPPLAQIQRGLCGILR--GGISVRSVTPVIPTAHARFDATSRRYHYYISACS 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W D M A +H +G HDFT+F +H Q T+ Sbjct: 124 NP--FWGDYCWERRTLPDMALMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQV 181 Query: 181 G-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V A FLH +R+ VG+L VG G+ T + + +Q++DR G AP Sbjct: 182 EMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQSEDRSLAGSAAP 241 Query: 236 PEGLYFDSVEYS 247 L+F Y Sbjct: 242 ARALFFVEATYP 253 >gi|326799821|ref|YP_004317640.1| tRNA pseudouridine synthase A [Sphingobacterium sp. 21] gi|326550585|gb|ADZ78970.1| tRNA pseudouridine synthase A [Sphingobacterium sp. 21] Length = 255 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 118/249 (47%), Gaps = 8/249 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + ++G Y GWQ Q+N S+Q + KA+ + V G GRTD+GVHA + A Sbjct: 7 RYFVELAFHGGAYHGWQIQENAISVQEVLNKALGTLLRVPVNTVGCGRTDTGVHAKQLFA 66 Query: 63 HFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFD + + LNA L I++ L +V HARF AI+RSY Y I Sbjct: 67 HFDDAVGAIEGNEERIVTGLNALL--PTDIAVKQLFVVAPNAHARFDAIKRSYEYHIHFG 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P G +W + D E M AA+H++ DF+ F H Q + + + Sbjct: 125 KNP--FLHGFSWQLRDRPDVEAMNEAARHMMKYKDFSCFSKSHTQVFTNNCQLTKAEWQW 182 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A FL +R+ VG+L +G+GK + + + +++R G P G Sbjct: 183 LDGGRLVFYISADRFLRNMVRAIVGTLMEIGNGKRDLNYIHEVINSKNRSMAGVSVPACG 242 Query: 239 LYFDSVEYS 247 LY V Y Sbjct: 243 LYLTEVLYP 251 >gi|256544630|ref|ZP_05472002.1| tRNA pseudouridine synthase A [Anaerococcus vaginalis ATCC 51170] gi|256399519|gb|EEU13124.1| tRNA pseudouridine synthase A [Anaerococcus vaginalis ATCC 51170] Length = 252 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 113/247 (45%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I+Y+GS + G+Q QKN ++Q +E AI VTGE + +GRTDSGVHA Sbjct: 4 QNILLKIQYDGSLFEGFQIQKNKRTVQKELEDAIRKVTGEENRIIASGRTDSGVHANEMY 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + L YL D I L VDK FHARFS ++Y Y I + Sbjct: 64 INFLTAKIIRADKFHFHLKKYL--PDDILALESKKVDKNFHARFSVKTKTYKYVISLDKI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSF 180 + + I LD + ++ + L G HDF F S + IR ID Sbjct: 122 LHPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFKAFMLSEKNDIINTIRKIDDCYFVLN 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + + A SFLH Q+R GSL + GK + D + + + P GLY Sbjct: 182 ENRLYLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKYYFNKNNTRRANPTLKAGGLY 241 Query: 241 FDSVEYS 247 DS++YS Sbjct: 242 LDSIDYS 248 >gi|227876165|ref|ZP_03994281.1| tRNA-pseudouridine synthase I [Mobiluncus mulieris ATCC 35243] gi|306819440|ref|ZP_07453147.1| tRNA pseudouridine synthase A [Mobiluncus mulieris ATCC 35239] gi|227843126|gb|EEJ53319.1| tRNA-pseudouridine synthase I [Mobiluncus mulieris ATCC 35243] gi|304647732|gb|EFM45050.1| tRNA pseudouridine synthase A [Mobiluncus mulieris ATCC 35239] Length = 326 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 118/306 (38%), Gaps = 60/306 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA--- 57 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 58 --------------------------LRQVAHFDLVREWVPVILCKALNAYL-------- 83 L + L L+ L Sbjct: 61 VAHFDLPDQFSGDWLRDAHDTEFAASLGAIVAASNPPGIANFQLSTGLHRRLESVLRLVT 120 Query: 84 -----------------KISDT---ISILNLSIVDKQFHARFSAIRRSYLYRIITRQ-AP 122 + I + V F ARFSA+ R Y Y +I A Sbjct: 121 SGNTPTIPGLNLDDQPIYPPEANGAIVVTAARPVPDAFDARFSALARHYEYLVIDEPTAR 180 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-G 181 L + W L+ M A+ L+G HDF F + ++ IRT+ V+ Sbjct: 181 NPLTRNTCWWYGAPLNVARMHEASAGLLGTHDFAAFCKPR-EGATTIRTLKQLGVSRLAP 239 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I V A +F H+ +RS VG+L VG GK + LE+AL + R PLAP +GL Sbjct: 240 GEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGLTL 299 Query: 242 DSVEYS 247 V+Y Sbjct: 300 VRVDYP 305 >gi|149279607|ref|ZP_01885736.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] gi|149229643|gb|EDM35033.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] Length = 283 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 115/250 (46%), Gaps = 8/250 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNG+ Y GWQ Q N ++Q ++KA+ + + V G GRTD+GVHA + Sbjct: 35 QRYFIELSYNGTEYHGWQIQPNAVTVQEDLDKALSVFFRQPVATVGCGRTDTGVHATQFF 94 Query: 62 AHFDLV----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFDL P +N+ L I+I + VD + HARF A R+Y Y + Sbjct: 95 VHFDLPAETASTLDPGRAVTGINSLLSY--QIAIGRIFAVDNEAHARFGATARAYHYHLH 152 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P L R+WL SLD E M AA ++ DF+ F + Q + + Sbjct: 153 FHKDPFKL--NRSWLYKGSLDVEAMNQAAAAILEYTDFSCFSKSNTQTFTNNCKVVEAYF 210 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ + A FL +R+ VG+L VG + + + + + R G P Sbjct: 211 TLTDGGLQFTIRADRFLRNMVRAIVGTLIKVGKKEINLNEFREIIASGSRSNAGQSVPAC 270 Query: 238 GLYFDSVEYS 247 GLY +V Y Sbjct: 271 GLYLVNVVYP 280 >gi|126433747|ref|YP_001069438.1| tRNA pseudouridine synthase A [Mycobacterium sp. JLS] gi|126233547|gb|ABN96947.1| tRNA pseudouridine synthase A [Mycobacterium sp. JLS] Length = 299 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 116/259 (44%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++ G I++A+ V V V AGRTD+GVHA QV Sbjct: 23 TRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAGVHATGQV 82 Query: 62 AHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ + +P ++ + + I ++ F ARFSA+R Sbjct: 83 AHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVRIRDIIRAPTGFDARFSALR 142 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+ T + P+ LD E M A LVG DF F H + ++ Sbjct: 143 RHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLVGLRDFAAFCR-HREGATT 201 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + + G+L+ V A +F + +RS VG+L VG+ + L A R Sbjct: 202 IRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEHRREPEWCAGLLSATRRS 261 Query: 229 ECGPLAPPEGLYFDSVEYS 247 APP+GL V+Y Sbjct: 262 SEFAAAPPQGLTLVGVDYP 280 >gi|297849290|ref|XP_002892526.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp. lyrata] gi|297338368|gb|EFH68785.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp. lyrata] Length = 373 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 142/316 (44%), Gaps = 70/316 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G ++ A G+ V + + RTD+GVHAL V Sbjct: 56 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQDAFHKFIGQPVKIFCSSRTDAGVHALSNV 115 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 116 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 175 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR++ P LEK R W +P+ L+ +M+ A + LVG HDF++FR+ CQA SP Sbjct: 176 RTYFYRLLAGSDPLSILEKDRCWHVPEELNPRSMQEACRVLVGYHDFSSFRAAGCQAKSP 235 Query: 169 IRTIDHFDVNSFG---------------------------------------NLIEIRVV 189 +R +D ++ +E Sbjct: 236 MRYLDELNITEVPSTPYFPSITERAWSNLNNGDPLACSSQPKSETAGVTTNVGEVEGSTD 295 Query: 190 ARSFLH------------------TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 SF Q+R VG+LK VG G+ T +D+E+ L+A+ Sbjct: 296 GDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAK 355 Query: 232 PLAPPEGLYFDSVEYS 247 P+AP GLY V+Y Sbjct: 356 PMAPASGLYLARVKYE 371 >gi|108798087|ref|YP_638284.1| tRNA pseudouridine synthase A [Mycobacterium sp. MCS] gi|119867183|ref|YP_937135.1| tRNA pseudouridine synthase A [Mycobacterium sp. KMS] gi|108768506|gb|ABG07228.1| tRNA pseudouridine synthase A [Mycobacterium sp. MCS] gi|119693272|gb|ABL90345.1| tRNA pseudouridine synthase A [Mycobacterium sp. KMS] Length = 299 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 116/259 (44%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++ G I++A+ V V V AGRTD+GVHA QV Sbjct: 23 TRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAGVHATGQV 82 Query: 62 AHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ + +P ++ + + I ++ F ARFSA+R Sbjct: 83 AHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVRIRDIIRAPTGFDARFSALR 142 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+ T + P+ LD E M A LVG DF F H + ++ Sbjct: 143 RHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLVGLRDFAAFCR-HREGATT 201 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + + G+L+ V A +F + +RS VG+L VG+ + L A R Sbjct: 202 IRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEHRREPEWCAGLLSATRRS 261 Query: 229 ECGPLAPPEGLYFDSVEYS 247 APP+GL V+Y Sbjct: 262 SEFAAAPPQGLTLVGVDYP 280 >gi|145225544|ref|YP_001136222.1| tRNA pseudouridine synthase A [Mycobacterium gilvum PYR-GCK] gi|145218030|gb|ABP47434.1| tRNA pseudouridine synthase A [Mycobacterium gilvum PYR-GCK] Length = 298 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 123/259 (47%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G I+ A+ V V+ AGRTDSGVHA QV Sbjct: 20 VRLRLDIAYDGTDFAGWATQAGQRTVAGVIDDALSTVFRTPVLTRAAGRTDSGVHATGQV 79 Query: 62 AHFDLVREWVPVILCKALNAY------------LKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ + +P + + A +++ + + + F ARFSA+R Sbjct: 80 AHADIPTDALPHAYPRTVRAGEPEFGPLVRRLGRMLTEDVRVRGIVRAAPGFDARFSALR 139 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y+YR+ T + E P+ LD + M AAQ+++G HDF F H ++ Sbjct: 140 RHYVYRLTTAPYGVEPAEARFVTAWPRPLDVDAMAGAAQNVLGLHDFAAFCR-HRDGATT 198 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + D G+ I + V A +F +RS VG+L VG+ + T + L A+ R Sbjct: 199 IRELQRLDCVRDGDRISVHVSADAFCWNMVRSLVGALLAVGEHRRDDTWCVQLLHARHRS 258 Query: 229 ECGPLAPPEGLYFDSVEYS 247 AP GL V+Y Sbjct: 259 SDFAAAPARGLTLVGVDYP 277 >gi|292557750|gb|ADE30751.1| tRNA pseudouridine synthase [Streptococcus suis GZ1] Length = 222 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 5/222 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + + FL+ Q+R+ VG+L +G+G+ ++ Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIK 220 >gi|306846234|ref|ZP_07478796.1| tRNA pseudouridine synthase A [Brucella sp. BO1] gi|306273485|gb|EFM55346.1| tRNA pseudouridine synthase A [Brucella sp. BO1] Length = 207 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 110/203 (54%), Positives = 142/203 (69%), Gaps = 1/203 (0%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD-TISILNLSIVDKQFHA 103 + AGRTD+GVHA QVAH DL ++W + A+NA+L +++ ISILN+ F A Sbjct: 1 MSAAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMAEERISILNVEKTTDTFDA 60 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 RFSA R YLYRI R+APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ C Sbjct: 61 RFSARARHYLYRIHNRRAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQC 120 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 QA SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+ Sbjct: 121 QAKSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALE 180 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A+DRK CG +APP GLY V+Y Sbjct: 181 ARDRKACGQVAPPYGLYLIGVDY 203 >gi|308814270|ref|XP_003084440.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus tauri] gi|116056325|emb|CAL56708.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus tauri] Length = 705 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 81/260 (31%), Positives = 121/260 (46%), Gaps = 18/260 (6%) Query: 4 YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHALR 59 Y M I Y+G+ Y G+QRQ + +S+Q +E+ + +TGE + + G+GRTD GVHA Sbjct: 17 YAMTISYDGTNYKGFQRQGADVASVQRELERCLTRLTGEGRDALRLGGSGRTDGGVHARG 76 Query: 60 QVAHFDLVREW----VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV HF ++W KA+N L + FHARF A R++Y Y Sbjct: 77 QVVHFYSEKDWRSAEDFARCVKAMNGML--PRDVRCERFWRPHPAFHARFHATRKTYAYY 134 Query: 116 IITRQAPLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS------P 168 + R + A ++ D + +R A Q+ VG DF F + + Sbjct: 135 VDARSPHDVFARAYACQCGWRACDVDALRRACQYFVGTRDFRAFANTSRDKPTSDEDLNT 194 Query: 169 IRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 RTI FDV + LI + FL+ Q+R+ VG+ +V G+ + L + DR Sbjct: 195 TRTIFRFDVFEQADGLIRLECEGDGFLYRQVRNMVGAALVVASGREKPEWILDLLASGDR 254 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + AP GL+ SVEY Sbjct: 255 RRVPTAAPARGLFLQSVEYP 274 >gi|189346490|ref|YP_001943019.1| tRNA pseudouridine synthase A [Chlorobium limicola DSM 245] gi|238692218|sp|B3EIU9|TRUA_CHLL2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189340637|gb|ACD90040.1| tRNA pseudouridine synthase A [Chlorobium limicola DSM 245] Length = 243 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 110/247 (44%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M +EY+G+ + GWQRQ G ++QG +E + + E + + AGRTD GVHA Sbjct: 1 MKNIRFDVEYDGTDFCGWQRQPGGIQTLQGELEAQLGRILQENISLTAAGRTDKGVHARL 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + ALN+ L DT+ + N +V FHARFSA R Y Y ++ Sbjct: 61 QVVNFMTGSAMELSKMAHALNSLL--PDTVRVSNPHVVPLDFHARFSAKEREYRYFLL-- 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P AL SL M+ AA LVG HDF +P+ I + Sbjct: 117 EEPSALRCRFTGCSKGSLHIGVMQDAAGLLVGEHDFLLLSKEPADKKNPVCLIKECEWQE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + R+ A FL + +R VG + VG G+ DL L A P GL Sbjct: 177 ENGVFVFRIRANRFLRSMVRYLVGVMIAVGRGRAVPEDLGMLLDDGLMTFPLFPAEPNGL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLWDVSY 243 >gi|171910331|ref|ZP_02925801.1| putative tRNA pseudouridylate synthase I [Verrucomicrobium spinosum DSM 4136] Length = 258 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 80/256 (31%), Positives = 117/256 (45%), Gaps = 13/256 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I Y+G + GWQ Q N ++Q +E A+ +TG V V G+GRTD+GVHAL QV Sbjct: 4 RRLKLTIAYDGRPWRGWQSQANSVTVQDQVETALRDLTGTQVNVQGSGRTDAGVHALAQV 63 Query: 62 AHFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AH D+ +ALN L +I +++ +FHARF A+ + Y YR+ Sbjct: 64 AHADVPDALKMGREAWVRALNVRL--PQSIRVMDCEDAAGEFHARFDAVGKIYCYRLWRG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS---------IHCQASSPIR 170 E+GRAW + +LD + + A L G H+F + A + R Sbjct: 122 DVMSPFEQGRAWHVYGALDLDLLHHGAGILTGTHNFARLSANRGGMSEDERREDAEALTR 181 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T+ D+ G +I I FL+ +R GSL V G+ L + + Sbjct: 182 TVRRIDIIPEGEVIRIEFEGDGFLYKMVRLMTGSLVQVARGRERLEWLSDLVGDPSGLKS 241 Query: 231 GPLAPPEGLYFDSVEY 246 AP +GLY V Y Sbjct: 242 NQCAPADGLYLVKVFY 257 >gi|117927545|ref|YP_872096.1| tRNA pseudouridine synthase A [Acidothermus cellulolyticus 11B] gi|117648008|gb|ABK52110.1| tRNA pseudouridine synthase A [Acidothermus cellulolyticus 11B] Length = 297 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 16/259 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + G+ RQ ++Q +E+A+ +V E V AGRTD+GVHA Q Sbjct: 20 RLRIDLGYDGTDFAGFARQPGLRTVQAEVERALAVVLRLPEPPPVTAAGRTDAGVHARGQ 79 Query: 61 VAHFDLV-----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 V H D+ + A + D I++ + + F ARFSA+ Sbjct: 80 VLHVDVPIDALRVVGAAETGAADAVAQLAARLNGVLPDDIAVHAVGLAPPGFDARFSALA 139 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y YR+ R+ L + P+ LD M A L+G HDF F + ++ I Sbjct: 140 RRYSYRVADRRW-DPLRRRDTLRWPRPLDETAMNAAGAALLGEHDFAAFCRRR-ENATTI 197 Query: 170 RTIDHFDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 R + F+ G+ + +V A +F H+ +R+ VG++ VG G+ + L A+ R Sbjct: 198 RRLLRFEWLRDGDGVLVAQVEADAFCHSMVRALVGAVLAVGAGRRPVGWPAEVLAARARD 257 Query: 229 ECGPLAPPEGLYFDSVEYS 247 + PP GL + V Y Sbjct: 258 PAVTVVPPHGLTLEEVCYP 276 >gi|256831855|ref|YP_003160582.1| tRNA pseudouridine synthase A [Jonesia denitrificans DSM 20603] gi|256685386|gb|ACV08279.1| tRNA pseudouridine synthase A [Jonesia denitrificans DSM 20603] Length = 310 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 113/260 (43%), Gaps = 16/260 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + Y G+ + GW RQ S+QG++E A+ + GE + V AGRTD+GVHA QV Sbjct: 26 RIRCDVAYRGTDFVGWARQPGLRSVQGTLEDALERLMGERIAVTVAGRTDAGVHARGQVV 85 Query: 63 HFDLVREWVPVILCK-------ALNAYL--KISDTISILNLSIVDKQFHARFSAIRRSYL 113 H D+ + + + AL A L + + + ++ F ARFSA+ R+Y Sbjct: 86 HCDVPGDRWERLPGRSDRTPGEALRAKLGGILPSDVVVRRVAPAPPGFDARFSALSRTYY 145 Query: 114 YRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YRI L + LD E M A LVG DF F +S IR + Sbjct: 146 YRIADDVMMRDPLTAPFVLWVRSPLDVEAMNRGAAPLVGLRDFAAFCKPRP-GASTIREL 204 Query: 173 DHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F L+ V A +F H +R+ VG+ VG G L +AL ++ R Sbjct: 205 QDFRWERVEQGPDEGLVRATVRADAFCHNMVRALVGASLDVGRGVRGEEWLVQALTSKSR 264 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + P GL + V Y Sbjct: 265 VNSSAVVQPHGLTLEQVAYP 284 >gi|257054500|ref|YP_003132332.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017] gi|256584372|gb|ACU95505.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017] Length = 300 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 23/265 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV---VVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ ++QG +E A+ V AGRTD+GVHA+ Sbjct: 15 VRLRIDLSYDGTDFSGWARQPGRRTVQGVLEDALAKQPPGASIAGPVVVAGRTDAGVHAI 74 Query: 59 RQVAHFDLVR--------------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 QV H D+ R + + + + +L++ F AR Sbjct: 75 GQVVHVDVTRLAGETRSRMPISSDGLPDLDWARY-RLNRVLPADVRVLSIRRAPAGFDAR 133 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA++R Y Y++ L + P+ L + M AA L+G HDF F Sbjct: 134 FSAVKRHYRYQVSDAPWGVSPLRRRDTLAWPRPLSVDAMNEAASSLLGLHDFAAFCKRR- 192 Query: 164 QASSPIRTIDHFDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + ++ IR + + + V A +F H+ +RS VG+L VGDG+ + L Sbjct: 193 EGATTIRELMELRWCRVDEYELHLSVSADAFCHSMVRSLVGALLWVGDGRRDVGWPLEVL 252 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 +++ R +AP GL V+Y Sbjct: 253 RSRQRSSV--VAPAHGLTLVKVDYP 275 >gi|226357340|ref|YP_002787080.1| tRNA-pseudouridine synthase I [Deinococcus deserti VCD115] gi|226319330|gb|ACO47326.1| putative tRNA-pseudouridine synthase I (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase) [Deinococcus deserti VCD115] Length = 266 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 115/248 (46%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + ++G Y GWQ Q N S+Q ++ A + AGRTD+GVHA Sbjct: 18 RRLRLTLAWDGGPYAGWQSQPNAPSVQDTLHAAFGRLGSGAFRPVAAGRTDAGVHAEAMP 77 Query: 62 AHFDLVREW--VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D+ + L +ALNA+L ++S+L FHARFS R Y+YR++ Sbjct: 78 VHVDVPGGFRVPAPKLARALNAWL--PPSVSVLEAFDAPAGFHARFSCTERRYVYRLLVS 135 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GRA +P +LD M AA +L G HDF F + + +R + V Sbjct: 136 SQRHPLWHGRALHLPGALDAGAMNAAATYLTGTHDFAAFATQ--EDRQTVRELRVLRVVP 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + E++V SFL +R VG+L L G GK + L + R + G P GL Sbjct: 194 EGPVWEVQVTGESFLRHMVRGLVGTLLLCGQGKLEPLAVRDVLAHRQRSQAGANVPAYGL 253 Query: 240 YFDSVEYS 247 YF Y Sbjct: 254 YFTGASYP 261 >gi|116331308|ref|YP_801026.1| pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124997|gb|ABJ76268.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 265 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 128/251 (50%), Gaps = 7/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y +++EY+G + G+Q QK+ SIQ ++EKAI ++ E + + GAGRTD+GVHA V Sbjct: 1 MNYALLVEYDGLCFNGFQTQKDLPSIQENLEKAIKILLKEEISITGAGRTDTGVHARGMV 60 Query: 62 AHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F ++ ++NA +SIL ++ V + F +RFS R Y Y I+ + Sbjct: 61 VNFKTIKTVQNFNKFLLSMNA--ITDSGLSILGMTEVGENFDSRFSCNSREYEYLILNTK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS 179 P + K RA+ +D ++ + L G HDF + + S IRTI + Sbjct: 119 YPRPIWKNRAFWYQHKIDVPRLKTELELLKGEHDFRSLAKTASMKDRSTIRTILDAKLER 178 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + L++I++ A FLH IR G+L + +GK ++ L ++DR G PP Sbjct: 179 SSEWEGLLKIKIRANGFLHNMIRILTGTLLEIANGKLKVPNILDILSSKDRTIAGITLPP 238 Query: 237 EGLYFDSVEYS 247 GLYF Y Sbjct: 239 YGLYFLRAYYD 249 >gi|227501274|ref|ZP_03931323.1| tRNA-pseudouridine synthase I [Anaerococcus tetradius ATCC 35098] gi|227216507|gb|EEI81913.1| tRNA-pseudouridine synthase I [Anaerococcus tetradius ATCC 35098] Length = 246 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 114/248 (45%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR + Y+G+ + G+Q QK+ S++ I+KA+ VTGE + GRTDSGVHA Sbjct: 1 MIRNVLVETAYDGTNFAGFQYQKDQRSVEEEIKKALVKVTGEDNRIVSCGRTDSGVHAKS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F + P L +L I L+ VD FHARFS + Y Y I Sbjct: 61 HFFNFLTASKIDPKAFSYHLQVHL--PADILALSSREVDLSFHARFSCKSKLYKYVIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN 178 + + + I LD + + + L G HDF +F S + +R ID Sbjct: 119 KGMHPIYRNYKEEISYKLDLKRLEEGLKLLCGEHDFRSFMREDKDLSINTVRKIDQAYFL 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ +EI A SFLH Q+R VGSL + GK + D ++ + P +G Sbjct: 179 ENGDDLEIYFKAESFLHNQVRIMVGSLVELSRGKLSLDDYKRFFDEDYKIRANPALGAQG 238 Query: 239 LYFDSVEY 246 LY VE+ Sbjct: 239 LYLWRVEF 246 >gi|255083272|ref|XP_002504622.1| predicted protein [Micromonas sp. RCC299] gi|226519890|gb|ACO65880.1| predicted protein [Micromonas sp. RCC299] Length = 253 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 85/253 (33%), Positives = 123/253 (48%), Gaps = 14/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHALRQ 60 Y + + Y+G Y G+Q Q G ++QG +E+A+ +TG G +GRTD+GVHA Q Sbjct: 3 YALKLAYDGEAYLGFQYQPKGKTVQGEVERALTKLTGHDREFLGMQASGRTDTGVHARGQ 62 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + HF K+LN + + + + FHARF A+R++Y Y + R Sbjct: 63 ILHFYTKEPVSDLERFHKSLNGIM--PKDVRCVEVMRPHPAFHARFHAVRKTYHYFLDPR 120 Query: 120 QAPLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS---SPIRTIDHF 175 + A K E +R AA VG HDFT+F + + SP RTI F Sbjct: 121 LVLDPFVRRHALHCGWKPPSVERLREAAAVFVGTHDFTSFSNKSRDKTLVRSPTRTIYRF 180 Query: 176 DVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVG---DGKWTSTDLEKALQAQDRKECG 231 DV + LI + V FL+ +R+ VG+L L DGK+T+ DL L+ +DR Sbjct: 181 DVVEQPDGLIRLEVEGNGFLYRMVRNMVGALMLAATGEDGKFTAEDLRDMLEGKDRGVAP 240 Query: 232 PLAPPEGLYFDSV 244 APP GL+ V Sbjct: 241 MGAPPHGLFLHEV 253 >gi|149196320|ref|ZP_01873375.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155] gi|149140581|gb|EDM28979.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155] Length = 276 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 123/251 (49%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M Y + I+++G+ +FGWQ Q + ++Q IEKA+ + + + G+GRTD+GVHA Sbjct: 1 MNSYKLSIQFDGTTWFGWQSQNDFEAVQEQIEKALNTLYNCSEIKIDGSGRTDAGVHAFG 60 Query: 60 QVAHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 A F + + L K LNA L +I I + + FHARFS I ++Y+Y I Sbjct: 61 LCATFTEPKISKFTSDTLRKGLNALL--PVSIRIRSALQCETDFHARFSCIGKTYVYFID 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFD 176 + +W + K L+ E MR + QHL G+HDF+ F IRT+ + Sbjct: 119 NSTTSSPILAPYSWHMRKKLNREKMRQSLQHLEGKHDFSAFTVDRKNLQGHAIRTVFKAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+++ + FL+ +RS G + VG AL++ R E G AP Sbjct: 179 LIEIGHIVALLFTGDGFLYRMVRSMAGEVVNVGMEFQNPQHTLDALESHQRSEAGVTAPA 238 Query: 237 EGLYFDSVEYS 247 +GL+ YS Sbjct: 239 KGLFLGQCYYS 249 >gi|307701658|ref|ZP_07638674.1| tRNA pseudouridine synthase A [Mobiluncus mulieris FB024-16] gi|307613161|gb|EFN92414.1| tRNA pseudouridine synthase A [Mobiluncus mulieris FB024-16] Length = 340 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 117/306 (38%), Gaps = 60/306 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA--- 57 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 58 --------------------------LRQVAHFDLVREWVPVILCKALNAYL-------- 83 L + L + L Sbjct: 61 VAHFDLPDQFSGDWLRDARDTDFAASLGAIVAASNPPGIANFQLSTGFHRRLDSVLRLVT 120 Query: 84 -----------------KISDT---ISILNLSIVDKQFHARFSAIRRSYLYRIITRQ-AP 122 + I + V F ARFSA+ R Y Y +I A Sbjct: 121 SGNTPTIPGINLDDQPIYPPEANGAIVVTAACPVLDAFDARFSALARHYEYLVIDEPTAR 180 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-G 181 L + W LD M A+ L+G HDF F + ++ IRT+ V+ Sbjct: 181 NPLTRNTCWWYGAPLDVARMHEASAGLLGTHDFAAFCKPR-EGATTIRTLKQLGVSRLAP 239 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I V A +F H+ +RS VG+L VG GK + LE+AL + R PLAP +GL Sbjct: 240 GEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGLTL 299 Query: 242 DSVEYS 247 V+Y Sbjct: 300 VRVDYP 305 >gi|167758957|ref|ZP_02431084.1| hypothetical protein CLOSCI_01303 [Clostridium scindens ATCC 35704] gi|167663364|gb|EDS07494.1| hypothetical protein CLOSCI_01303 [Clostridium scindens ATCC 35704] Length = 245 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 9/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVH 56 M + IEY+GS Y GW R +++ +++ I + + ++GE + ++ RT+ GVH Sbjct: 1 MRNIKLTIEYDGSRYQGWTRLGKEESNNTVSNKIIEVLRKMSGEYLIELNCGCRTEVGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q+A+F + + + LN YL I+I + V ++FHA+ +A ++Y+YR+ Sbjct: 61 AYAQIANFKTESKMDVLEIKHYLNRYL--PMDIAITEVEEVPERFHAQLNAASKTYVYRM 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P ++ + K D M+ AA L+G HDF F + ++ S R I + Sbjct: 119 TIDDVPSVFDRKYTYHCFKIPDKRVMQQAAMLLIGTHDFKNFSTAK-KSKSTERQIFEIE 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ++I + A FLH R +G+L +G G D+E+ R+ P Sbjct: 178 VYGDTEEMQILIHADDFLHNMARLIIGTLMDIGFGTRRKEDIEEIFAG--RQLASAPCDP 235 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 236 KGLYLQEVAY 245 >gi|325479638|gb|EGC82730.1| tRNA pseudouridine synthase A [Anaerococcus prevotii ACS-065-V-Col13] Length = 246 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 117/248 (47%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MI+ + Y+G+ + G+Q QK+ S++ + KAI VTGE + GRTDSGVHA Sbjct: 1 MIKNILLETSYDGALFSGFQYQKDQRSVEEELTKAIRKVTGEENRIVSCGRTDSGVHAKS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F + P+ + + +L D I ++ VD FHARFSA + Y Y I Sbjct: 61 HFVNFLTASDINPIGIKFQIQPHL--PDDILAISSREVDLNFHARFSAKSKLYKYVICRS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN 178 + + + + LD + + LVG HDF F S + +RTI+ Sbjct: 119 KDMHPIYRNYKEHVTYKLDLKKLEEGLNLLVGTHDFRLFMMEDKNLSINTVRTIEEAYFI 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G +EI SFLH Q+R VGSL + G+ + D EK ++ K P EG Sbjct: 179 ENGADLEIYFKGESFLHNQVRIMVGSLIELARGRISLDDYEKFFDKENTKRANPALGAEG 238 Query: 239 LYFDSVEY 246 LY VE+ Sbjct: 239 LYLWRVEF 246 >gi|296130457|ref|YP_003637707.1| tRNA pseudouridine synthase A [Cellulomonas flavigena DSM 20109] gi|296022272|gb|ADG75508.1| tRNA pseudouridine synthase A [Cellulomonas flavigena DSM 20109] Length = 306 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 83/267 (31%), Positives = 123/267 (46%), Gaps = 22/267 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-----GEI-VVVHGAGRTDSGV 55 +R + + Y+G G+ GW RQ ++QG +E A+ V GE V AGRTD+GV Sbjct: 12 VRLRLDLAYDGGGFAGWARQPGLRTVQGELEDALATVLRSGPRGEPRPRVTVAGRTDAGV 71 Query: 56 HALRQVAHFDL-------VREWVPVILCKALNAYL--KISDTISILNLSIVDKQFHARFS 106 HA QVAH D+ R L L + + + + + F ARFS Sbjct: 72 HARGQVAHVDVVPDALAAARGRSDRAAVDVLGTRLAGILPPDVVVHAVRHAPEGFDARFS 131 Query: 107 AIRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+RR Y YR+ + L +G ++LD M AA+ LVGRHDF + A Sbjct: 132 ALRRRYAYRVCDSEGTRDPLRRGWVLWHRRALDVAAMDAAARSLVGRHDFAAYCKPRPDA 191 Query: 166 SSPIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + IRT++ F L+ V A +F H+ +R+ VG+ VG+G+ T Sbjct: 192 -TTIRTLEEFTWTRPVDGPDAGLVVAHVQADAFCHSMVRALVGASLAVGEGRRPVTWPRD 250 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 L A+ R+ + P+GL + V Y Sbjct: 251 LLDARTRQGGATVVAPQGLTLEDVGYP 277 >gi|269976928|ref|ZP_06183902.1| tRNA pseudouridine synthase A [Mobiluncus mulieris 28-1] gi|269934759|gb|EEZ91319.1| tRNA pseudouridine synthase A [Mobiluncus mulieris 28-1] Length = 326 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 118/306 (38%), Gaps = 60/306 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA--- 57 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 58 --------------------------LRQVAHFDLVREWVPVILCKALNAYL-------- 83 L + L L+ L Sbjct: 61 VAHFDLPDQFSGDWLRDAHDTDFAASLGAIVAASNPPGIANFQLSTGLHRRLDSVLRLVT 120 Query: 84 -----------------KISDT---ISILNLSIVDKQFHARFSAIRRSYLYRIITRQ-AP 122 + I + V F ARFSA+ R Y Y +I A Sbjct: 121 SGNTPTIPGLNLDDQPIYPPEANGAIVVTTARPVPDAFDARFSALARHYEYLVIDEPTAR 180 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-G 181 L + W L+ M A+ L+G HDF F + ++ IRT+ V+ Sbjct: 181 NPLTRNTCWWYGAPLNVARMHEASAGLLGTHDFAAFCKPR-EGATTIRTLKQLGVSRLAP 239 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I V A +F H+ +RS VG+L VG GK + LE+AL + R PLAP +GL Sbjct: 240 GEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGLTL 299 Query: 242 DSVEYS 247 V+Y Sbjct: 300 VRVDYP 305 >gi|269122416|ref|YP_003310593.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386] gi|268616294|gb|ACZ10662.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386] Length = 244 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 118/246 (47%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++ EY+GS + G+QRQ N ++QGSIE+ I E V + +GRTD GVHAL Q Sbjct: 1 MKNIKIVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNEEVNLLSSGRTDKGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F + + P I+ LN L S I + + D FHARFSA R+YLY + + Sbjct: 61 VSNFFMEKSISPDIIKGILNRAL--SGKIRVTDAKEADSDFHARFSAKTRTYLYIMKLKD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + E ++ + +GRH+F +FR +P R I++ Sbjct: 119 EITPFESSYVSALDGKIIPEKLQKIMEPFIGRHNFDSFRKKDKDNKNPEREINNIRCYEE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + +SFL T IR +GS V K + L D LAP EGLY Sbjct: 179 DKRLFIEIEGKSFLKTMIRIMIGSALAVYFEKRNPDYICDKLDNPDSDGEKILAPSEGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LYKVNY 244 >gi|313201346|ref|YP_004040004.1| tRNA pseudouridine synthase a [Methylovorus sp. MP688] gi|312440662|gb|ADQ84768.1| tRNA pseudouridine synthase A [Methylovorus sp. MP688] Length = 225 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 80/210 (38%), Positives = 112/210 (53%), Gaps = 2/210 (0%) Query: 38 VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 + V V AGRTD+GVHAL QV HF+ E + +NA L ++ +L V Sbjct: 1 MACHPVRVIAAGRTDTGVHALAQVVHFETTTERPLNAWVRGVNAGL--PSSVRVLWAQQV 58 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 D +FHARFSA +R Y Y + + A+ G+ + LD + M AA HL+G HDF+ Sbjct: 59 DDEFHARFSARQRYYQYILFDQAVAPAILAGKVGWFHQPLDVDAMAEAAAHLIGEHDFSA 118 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 FR+ CQA SP+RT+ +V G I +FLH Q+R+ VG+L VG G Sbjct: 119 FRAAECQAKSPVRTLQQAEVRRAGQAILFEFSGNAFLHHQVRNMVGALVYVGKGSQPPAF 178 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +++ LQ+ DR+ P P+GLY V Y Sbjct: 179 IQQLLQSHDRRLAPPTFSPDGLYLSGVGYE 208 >gi|116328579|ref|YP_798299.1| pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121323|gb|ABJ79366.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 265 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 128/251 (50%), Gaps = 7/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y +++EY+G + G+Q QK+ SIQ ++EKA+ ++ E + + GAGRTD+GVHA V Sbjct: 1 MNYALLVEYDGLCFNGFQTQKDLPSIQENLEKAVKILLKEEISITGAGRTDTGVHARGMV 60 Query: 62 AHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F ++ ++NA +SIL ++ V + F +RFS R Y Y I+ + Sbjct: 61 VNFKTIKTVQNFNKFLLSMNA--ITDSGLSILGMTEVGENFDSRFSCNSREYEYLILNTK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS 179 P + K RA+ +D ++ + L G HDF + + S IRTI + Sbjct: 119 YPRPIWKNRAFWYQHKIDVPRLKTELELLKGEHDFRSLAKTASMKDRSTIRTILDAKLER 178 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + L++I++ A FLH IR G+L + +GK ++ L ++DR G PP Sbjct: 179 SSEWEGLLKIKIRANGFLHNMIRILTGTLLEIANGKLKVPNILDILSSKDRTIAGITLPP 238 Query: 237 EGLYFDSVEYS 247 GLYF Y Sbjct: 239 YGLYFLRAYYD 249 >gi|325847073|ref|ZP_08169899.1| tRNA pseudouridine synthase A [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481045|gb|EGC84090.1| tRNA pseudouridine synthase A [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 252 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 116/246 (47%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I+Y+GS + G+Q QK+ ++Q +E+AI VTGE + +GRTDSGVHA Sbjct: 4 QNILLKIQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANEMY 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F ++ L YL I L+ VDK FHARFS ++Y Y I + Sbjct: 64 INFLTAKDIRADKFHFHLKKYL--PADILALSSKKVDKNFHARFSVKTKTYKYVISLEKI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSF 180 + + I LD + ++ + L G HDF F S + IR ID Sbjct: 122 LHPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFRAFMLSEKNDIINTIRKIDDCYYILD 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N++ + A SFLH Q+R GSL + GK + D + ++K P GLY Sbjct: 182 NNILFLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKFYFDKNNKKRANPTLKAGGLY 241 Query: 241 FDSVEY 246 DS++Y Sbjct: 242 LDSIDY 247 >gi|50955536|ref|YP_062824.1| tRNA pseudouridine synthase A [Leifsonia xyli subsp. xyli str. CTCB07] gi|62901288|sp|Q6AD25|TRUA_LEIXX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50952018|gb|AAT89719.1| tRNA pseudouridine synthase A [Leifsonia xyli subsp. xyli str. CTCB07] Length = 288 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 124/266 (46%), Gaps = 21/266 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHAL 58 R+ + I Y G+ + GW RQ + ++QG++E+A+ + +GE + AGRTD+GVHA Sbjct: 6 TRFRLDIAYQGTDFAGWARQPDLRTVQGTLEEALATIFRCSGEPPSLTVAGRTDAGVHAT 65 Query: 59 RQVAHFDL---------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 QVAH DL + L + +N L + + + F A Sbjct: 66 GQVAHVDLSPEQVALLRRPHGKREPQLAHDALKRRVNGVLGPVPDVLVSRATEAPAGFDA 125 Query: 104 RFSAIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R Y YR+ R A L++ R +P +LD + M A ++G HDF ++ Sbjct: 126 RFSALWRRYEYRVADRIALRDPLQRHRTAWVPNTLDVDAMDRGAHGMLGLHDFASYCKAR 185 Query: 163 CQASSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + ++ IRT+ F + + V A +F H+ +R+ VG+ VG+GK DL Sbjct: 186 -EGATTIRTLQAFSWRRDAEGVLLGEVAADAFCHSMVRALVGACVEVGEGKLRPGDLVTL 244 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 + R + P GL V Y Sbjct: 245 RDERQRTSAFKVMPARGLTLREVGYP 270 >gi|296394888|ref|YP_003659772.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985] gi|296182035|gb|ADG98941.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985] Length = 278 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 113/251 (45%), Gaps = 9/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW RQ ++ G IE+A+ + + AGRTD+GVHA QVA Sbjct: 10 RLRLDVAYDGTEFSGWARQPGRRTVAGVIEEALSTLLQSSAQLTVAGRTDAGVHATGQVA 69 Query: 63 HFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 H D+ P L + L L + +L+ V QF ARFSA+RR Y Y I Sbjct: 70 HVDVRADLVSGRLPPEKLVRKLARML--PTDVRVLSAQKVSAQFDARFSALRRHYRYHIT 127 Query: 118 TR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L + LD + + A+ LVG HDF F ++ IR + F+ Sbjct: 128 RSVYGADPLRAREVVPWARPLDFDVLNAASSALVGLHDFAAFCRPRP-GATTIRELQRFE 186 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G LI + A +F + RS VG++ V +G+ + L A R +AP Sbjct: 187 WAESGVLITASITADAFCWSMCRSLVGAVTAVAEGRRDLAWIRSLLTASSRASEITVAPA 246 Query: 237 EGLYFDSVEYS 247 GL V+Y Sbjct: 247 HGLCLVGVDYP 257 >gi|289663172|ref|ZP_06484753.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 257 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 95/248 (38%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADGQVQVICAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ V FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARREPRGWM--LGTTARLPPSIAVRWCVPVADDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPALYRQTVSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRNLQAIHVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 IGEVVEVQVQANAFLHHMVRNIVGSLILVGTGERPADWIATLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|161833682|ref|YP_001597878.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri GWSS] gi|152206172|gb|ABS30482.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri GWSS] Length = 250 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y+G+ ++GWQ QK S+Q +IE + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ + + + + I I+N+ V K+ HARF+AI R Y YRI + Sbjct: 61 AHFEFYEKKILLYRNFLFKFNSFLPLNIKIINIFTVKKKIHARFTAISRVYEYRISLGKN 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +L+ WL K + + A+ L D+++F C + I I + + Sbjct: 121 PFSLDISWQWLSKKKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHIKN 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ + A +L +RS VG+L +G GK T D L A+DR AP +GL+ Sbjct: 181 NILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRNII--SAPAKGLFL 238 Query: 242 DSVEYS 247 + Y Sbjct: 239 TKINYP 244 >gi|311896534|dbj|BAJ28942.1| putative tRNA pseudouridine synthase A [Kitasatospora setae KM-6054] Length = 302 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 116/259 (44%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW RQ+ ++QG +E A+ +V E + AGRTD+GVHA Sbjct: 20 TRIRLDLAYHGAEFSGWARQRERRTVQGELEDALRIVLRSEENFPLTVAGRTDAGVHARG 79 Query: 60 QVAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL K L ++ + + ++ F ARF+AI R Y YR+ Sbjct: 80 QVAHVDLPDALWAQHGEKLLRRLAGRLPADVRVYRVAEAPHGFDARFAAIWRRYAYRVAD 139 Query: 119 RQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G + LD E M AA+ LVG HDF + + ++ IRT+ Sbjct: 140 HPGGVDPLLRGHVLWHDRPLDLEKMNEAARLLVGEHDFAAYCKKR-EGATTIRTLLELHW 198 Query: 178 NS---------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 G+L V A +F H +R+ VG++ LVGDG K L R Sbjct: 199 ERVPIDPYAAQEGSLAVATVRADAFCHNMVRALVGAMLLVGDGHRPVEFPGKVLAGGVRD 258 Query: 229 ECGPLAPPEGLYFDSVEYS 247 + P GL + V Y Sbjct: 259 SAVNVIRPHGLTLEEVGYP 277 >gi|308371354|ref|ZP_07424662.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu003] gi|308372553|ref|ZP_07667408.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu004] gi|308373747|ref|ZP_07667643.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu005] gi|308374881|ref|ZP_07667891.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu006] gi|308380705|ref|ZP_07669261.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu011] gi|308406162|ref|ZP_07669527.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu012] gi|308329092|gb|EFP17943.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu003] gi|308332900|gb|EFP21751.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu004] gi|308336560|gb|EFP25411.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu005] gi|308340435|gb|EFP29286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu006] gi|308360702|gb|EFP49553.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu011] gi|308364317|gb|EFP53168.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu012] gi|323717939|gb|EGB27128.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CDC1551A] Length = 303 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G ++ A+ + V + AGRTD+GVHA QV Sbjct: 28 VRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQV 87 Query: 62 AHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ + +P +A + + IL+++ F ARFSA+R Sbjct: 88 AHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALR 147 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y+YR+ T + + P+ LD + M A++ L+G HDF F H + ++ Sbjct: 148 RHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCR-HREGATT 206 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + D + G L+ V A +F + +RS VG+L VG+ + +T + L A R Sbjct: 207 IRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRS 266 Query: 229 ECGPLAPPEGLYFDSVEYS 247 +AP GL V+Y Sbjct: 267 SDFAVAPAHGLTLIQVDYP 285 >gi|293190229|ref|ZP_06608725.1| tRNA pseudouridine synthase A [Actinomyces odontolyticus F0309] gi|292821045|gb|EFF79998.1| tRNA pseudouridine synthase A [Actinomyces odontolyticus F0309] Length = 302 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 126/278 (45%), Gaps = 35/278 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++QG +E A+ + + E VV AGRTD+GVHA QV Sbjct: 4 RRLRLDLGYDGTDFRGWAAQPGLRTVQGEVEAALAMASREDVVTTVAGRTDAGVHARHQV 63 Query: 62 AHFDL---------------VREWVPVILCKALNAYLKISD----------------TIS 90 H D+ + V + + LN L + Sbjct: 64 CHADISEAAWARLSPRGGESDEQAVASAIVRRLNKILSGRYGERARGRDLAVARGTCDVR 123 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 I + ++VD F ARFSA+ RSY YR+ R P L + + + LD M A L+ Sbjct: 124 IYSAAVVDPSFDARFSALGRSYAYRVSDRPEP--LGRWDRLWVEEPLDEAAMNEAGAALL 181 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVG 209 G HDF F + ++ IRT+ + RV A +F H+ +RS VG+L LVG Sbjct: 182 GEHDFLGFCRPR-EGATTIRTLRTLLAERDAEGTLVFRVEADAFCHSMVRSLVGALLLVG 240 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G + L+A+ R E P+AP GL + VEY Sbjct: 241 SGARDVAYPVQILRARSRSEAAPIAPAHGLTLEGVEYP 278 >gi|15843050|ref|NP_338087.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551] gi|148824665|ref|YP_001289419.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis F11] gi|161352460|ref|NP_217972.2| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Rv] gi|161511525|ref|NP_857124.2| tRNA pseudouridine synthase A [Mycobacterium bovis AF2122/97] gi|253800500|ref|YP_003033501.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 1435] gi|254234047|ref|ZP_04927372.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C] gi|254366056|ref|ZP_04982101.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str. Haarlem] gi|289555726|ref|ZP_06444936.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 605] gi|289747288|ref|ZP_06506666.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis 02_1987] gi|298526939|ref|ZP_07014348.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|308377357|ref|ZP_07441941.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu008] gi|308378330|ref|ZP_07482228.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu009] gi|308379519|ref|ZP_07668975.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu010] gi|54039781|sp|P65847|TRUA_MYCBO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042086|sp|P65846|TRUA_MYCTU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13883394|gb|AAK47901.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551] gi|124599576|gb|EAY58680.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C] gi|134151569|gb|EBA43614.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str. Haarlem] gi|148723192|gb|ABR07817.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis F11] gi|253322003|gb|ACT26606.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 1435] gi|289440358|gb|EFD22851.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 605] gi|289687816|gb|EFD55304.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis 02_1987] gi|298496733|gb|EFI32027.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|308348190|gb|EFP37041.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu008] gi|308352914|gb|EFP41765.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu009] gi|308356757|gb|EFP45608.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu010] gi|328460231|gb|AEB05654.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 4207] Length = 297 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G ++ A+ + V + AGRTD+GVHA QV Sbjct: 22 VRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQV 81 Query: 62 AHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ + +P +A + + IL+++ F ARFSA+R Sbjct: 82 AHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALR 141 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y+YR+ T + + P+ LD + M A++ L+G HDF F H + ++ Sbjct: 142 RHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCR-HREGATT 200 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + D + G L+ V A +F + +RS VG+L VG+ + +T + L A R Sbjct: 201 IRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRS 260 Query: 229 ECGPLAPPEGLYFDSVEYS 247 +AP GL V+Y Sbjct: 261 SDFAVAPAHGLTLIQVDYP 279 >gi|257066904|ref|YP_003153160.1| tRNA pseudouridine synthase A [Anaerococcus prevotii DSM 20548] gi|256798784|gb|ACV29439.1| tRNA pseudouridine synthase A [Anaerococcus prevotii DSM 20548] Length = 246 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 108/248 (43%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR + Y+G+ + G+Q QK+ S++ + AI VTGE + GRTDSGVHA Sbjct: 1 MIRNVLLETAYDGTNFAGFQYQKDERSVEEELRNAIRKVTGEDNRIVSCGRTDSGVHARS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F P + +L D I L+ V FHARFS + Y Y I Sbjct: 61 HFVNFLTASNISPKAFSFHIQPHL--PDDILALSSKEVSLDFHARFSCKSKLYKYVIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN 178 + + + I LD + + + L G HDF F + + +R ID Sbjct: 119 RLMYPVFRNYKEEISYPLDLKRLDQGLKILEGEHDFRLFMREDKKLKINTVRKIDEAYFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + I SFLH Q+R VGSL + G+ + D K + K P +G Sbjct: 179 EEGDDLAIYFKGESFLHNQVRIMVGSLIELSRGRLSLDDYRKFFDKDNNKRANPALGAQG 238 Query: 239 LYFDSVEY 246 LY VE+ Sbjct: 239 LYLRRVEF 246 >gi|221195458|ref|ZP_03568513.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626] gi|221184645|gb|EEE17037.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626] Length = 281 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 113/248 (45%), Gaps = 7/248 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G+ + G+ Q ++ G +++A+ V V + AGRTD+GV AL Q Sbjct: 22 IKLGYRGAAFSGFAEQPKQRTVAGDLKQALTTVLRRPVELTCAGRTDAGVSALAQYVSVP 81 Query: 66 LVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + + L + + D ISI + F ARF A+ RSY YRI Sbjct: 82 VDAHEEKIPKRQLLRSLTALTDDDISIQEIYKAQSGFSARFDALARSYRYRISAG-LRPV 140 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFGN- 182 L AW +LD M AAQ VG HDF +F R ++ V Sbjct: 141 LAWDHAWWYNGALDVAAMNEAAQIFVGEHDFKSFCKALSAVDKPTHRYVESIQVAEIQEA 200 Query: 183 ---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI I +V +FLHT +R+ VG+L VG G + + L A DRK+ GP AP +GL Sbjct: 201 GEKLIAIDIVGNAFLHTMVRTMVGTLVEVGRGHRATNWTREVLLACDRKKAGPTAPAKGL 260 Query: 240 YFDSVEYS 247 F V Y Sbjct: 261 VFTGVLYP 268 >gi|319950123|ref|ZP_08024062.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4] gi|319436208|gb|EFV91389.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4] Length = 380 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 124/266 (46%), Gaps = 23/266 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW RQ ++ G +E + V VV+ AGRTD+GVHA QV Sbjct: 4 RRIRLDVAYDGTDFSGWARQPGLRTVCGVLEAELSTVLRHPVVLTVAGRTDAGVHARAQV 63 Query: 62 AHFDLVREWV--------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 H D+ W+ P L + L L I++++ V +F ARFSA+RR Y Sbjct: 64 CHLDVDPAWLDQRSLDGRPEALVRRLARLL--PADIAVMDGRWVPDEFDARFSALRRHYE 121 Query: 114 YRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T + ++ D E +R A++ L+G HDF F + ++ IR + Sbjct: 122 YRLTTAPWGAEPIRARDTAAWTRTADLEAVRAASERLLGLHDFAAFCRRR-EGATTIREL 180 Query: 173 DHFDVNSFGN-----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 F+ + + + V A +F + +RS VG++ VG+G+ + + Sbjct: 181 QRFEWRTEPDPRGPDAPGAAEVWTASVSADAFCWSMVRSLVGAVMAVGEGRRSLEWISGL 240 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 L +R P+AP GL V+Y Sbjct: 241 LAETERSSAVPVAPACGLSLIGVDYP 266 >gi|313819879|gb|EFS57593.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA1] Length = 279 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 118/253 (46%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L I + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRGLT--PDIVVTSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAFCK-HREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLTLEEVGYP 250 >gi|289427598|ref|ZP_06429310.1| tRNA pseudouridine synthase A [Propionibacterium acnes J165] gi|289159089|gb|EFD07281.1| tRNA pseudouridine synthase A [Propionibacterium acnes J165] gi|313808787|gb|EFS47241.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA2] gi|313824843|gb|EFS62557.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL063PA1] gi|314979788|gb|EFT23882.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL072PA2] gi|315089972|gb|EFT61948.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL072PA1] gi|327325121|gb|EGE66927.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL096PA3] gi|327449322|gb|EGE95976.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL013PA2] gi|332676207|gb|AEE73023.1| tRNA pseudouridine synthase A [Propionibacterium acnes 266] Length = 279 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 118/253 (46%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L I + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLT--PDIVVTSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAFCK-HREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLTLEEVGYP 250 >gi|282855153|ref|ZP_06264485.1| tRNA pseudouridine synthase A [Propionibacterium acnes J139] gi|295131337|ref|YP_003582000.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK137] gi|282581741|gb|EFB87126.1| tRNA pseudouridine synthase A [Propionibacterium acnes J139] gi|291375873|gb|ADD99727.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK137] gi|313773224|gb|EFS39190.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL074PA1] gi|313810419|gb|EFS48133.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL083PA1] gi|313812247|gb|EFS49961.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL025PA1] gi|313817968|gb|EFS55682.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL046PA2] gi|313823371|gb|EFS61085.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA2] gi|313830085|gb|EFS67799.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL007PA1] gi|313832643|gb|EFS70357.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL056PA1] gi|314924129|gb|EFS87960.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL001PA1] gi|314925807|gb|EFS89638.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA3] gi|314960817|gb|EFT04918.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA2] gi|314964970|gb|EFT09069.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL082PA2] gi|314973066|gb|EFT17162.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL053PA1] gi|314975562|gb|EFT19657.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL045PA1] gi|314982235|gb|EFT26328.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA3] gi|314984846|gb|EFT28938.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA1] gi|314986106|gb|EFT30198.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA2] gi|314988720|gb|EFT32811.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA3] gi|315079903|gb|EFT51879.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL078PA1] gi|315083346|gb|EFT55322.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL027PA2] gi|315086881|gb|EFT58857.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA3] gi|315090495|gb|EFT62471.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA4] gi|315093731|gb|EFT65707.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL060PA1] gi|315096707|gb|EFT68683.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL038PA1] gi|327325250|gb|EGE67055.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL096PA2] gi|327325550|gb|EGE67349.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL103PA1] gi|327444051|gb|EGE90705.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL043PA1] gi|327449450|gb|EGE96104.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL043PA2] gi|328756334|gb|EGF69950.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL020PA1] gi|328761333|gb|EGF74860.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL099PA1] Length = 279 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 118/253 (46%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L I + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLT--PDIVVTSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAFCK-HREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLTLEEVGYP 250 >gi|303288620|ref|XP_003063598.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454666|gb|EEH51971.1| predicted protein [Micromonas pusilla CCMP1545] Length = 261 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 121/256 (47%), Gaps = 14/256 (5%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHALR 59 Y + + Y+G Y G+Q Q + ++QG +EKA+ +TGE + + +GRTD+GVHA Sbjct: 3 YALTLAYDGENYLGFQYQPRDAKTVQGEVEKALTKITGEDRDFLGIQASGRTDAGVHARG 62 Query: 60 QVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HF R +++N L + ++ FHARF A+R++Y Y + T Sbjct: 63 QVLHFYARRPIEDLARFQRSMNGVL--PRDVRVMKAIRPHPAFHARFHAVRKTYHYYLDT 120 Query: 119 RQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQAS---SPIRTIDH 174 R + A + D E +R A+ VG DF+ F + + P+RTI Sbjct: 121 RLTMDPFLRRHALHVGWNPPDVEKLRRGAECFVGTRDFSAFSNKPRDKTLVRDPVRTIYR 180 Query: 175 FDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVG-DGKWTSTDLEKALQAQDRKECG 231 FDVN L+ + V F++ Q+R+ VG++ K D+ L+ +DR Sbjct: 181 FDVNELKGDGLLRLEVEGNGFMYKQVRNMVGAMITAATSKKMQPADIAAMLEGKDRGVAP 240 Query: 232 PLAPPEGLYFDSVEYS 247 AP GL+ V Y Sbjct: 241 MGAPAHGLFLHDVVYP 256 >gi|256380565|ref|YP_003104225.1| tRNA-pseudouridine synthase I [Actinosynnema mirum DSM 43827] gi|255924868|gb|ACU40379.1| tRNA-pseudouridine synthase I [Actinosynnema mirum DSM 43827] Length = 314 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW RQ N ++ G +E + V E VV+ AGRTD+GVHA QV Sbjct: 37 VRVRLDLAYDGTEFSGWARQPNRRTVCGVLEDTMSTVLREDVVLTVAGRTDAGVHAAGQV 96 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL L K L L + + + +V F ARF+A+RR Y YR+ Sbjct: 97 AHVDLPEAADVAGLPKRLARAL--PADVRVFSARVVPAAFDARFAALRRHYEYRVTDAPF 154 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + P+ LD M A+ ++G DF + + ++ IR + + Sbjct: 155 GAHPLRRLDTLAWPRQLDVAAMNAASGLMLGERDFCAYCRRR-EGATTIRELQRLEWVRE 213 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ V A +F H+ +RS VG+L VG+G+ L R +APP GL Sbjct: 214 GDLLTAFVSADAFCHSMVRSLVGALLAVGEGRKPVEWPASLLSLHSRSSEVTVAPPHGLS 273 Query: 241 FDSVEYS 247 V+Y Sbjct: 274 LVRVDYP 280 >gi|78185547|ref|YP_377981.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9902] gi|123743513|sp|Q3AW68|TRUA_SYNS9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78169841|gb|ABB26938.1| tRNA pseudouridine synthase [Synechococcus sp. CC9902] Length = 300 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 110/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ N S+Q +E AI + + AGRTD+GVHA Q Sbjct: 16 RRIALSLQYEGSDFCGWQRQNNARSVQAVLETAIAQLDPLRPIQSFAAGRTDAGVHAAAQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L +I + + +HA +SA+ R Y Y I + Sbjct: 76 VVHFDCSGPIPAAKWAPALNGRL--PASIRVRESVERPRDWHACYSAVYRRYRYIIHNGR 133 Query: 121 APLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P W L+ ENMR+A + ++G HDF F + TI V Sbjct: 134 RPNLFLTPWTWHRYHHRLNEENMRVALEGMIGLHDFAAFMRAGSRRPHSRTTIQDVLVER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI + + A FL+ +R + L VG+ + + E+ + + R + AP GL Sbjct: 194 EGDLIRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVKAFEQRWRDRRRDQVREAAPARGL 253 Query: 240 YFDSVEY 246 Y Sbjct: 254 CLLRAGY 260 >gi|154507834|ref|ZP_02043476.1| hypothetical protein ACTODO_00316 [Actinomyces odontolyticus ATCC 17982] gi|153797468|gb|EDN79888.1| hypothetical protein ACTODO_00316 [Actinomyces odontolyticus ATCC 17982] Length = 302 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 127/278 (45%), Gaps = 35/278 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++QG +E A+ + + E VV AGRTD+GVHA QV Sbjct: 4 RRLRLDLGYDGTDFRGWAAQPGLRTVQGEVEAALAMASREDVVTTVAGRTDAGVHARHQV 63 Query: 62 AHFDL---------------VREWVPVILCKALNAYLKISD----------------TIS 90 H D+ + V + + LN L + Sbjct: 64 CHADISEAAWARLSPRGGESNEQAVASAIVRRLNKILSGRYGERARGRDLAAARGTCDVR 123 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 I + ++VD F ARFSA+ RSY YR+ R P L + + + LD M A L+ Sbjct: 124 IYSAAVVDPSFDARFSALGRSYAYRVSDRPEP--LGRWDRLWVEEPLDEAAMNEAGAALL 181 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVG 209 G HDF F + ++ IRT+ + RV A +F H+ +RS VG+L LVG Sbjct: 182 GEHDFLGFCRPR-EGATTIRTLRTLLAERDAEGTLVFRVEADAFCHSMVRSLVGALLLVG 240 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G T + L+A+ R E P+AP GL + VEY Sbjct: 241 SGARDVTYPVQILRARSRSEAAPIAPAHGLTLEGVEYP 278 >gi|315445896|ref|YP_004078775.1| pseudouridylate synthase I [Mycobacterium sp. Spyr1] gi|315264199|gb|ADU00941.1| pseudouridylate synthase I [Mycobacterium sp. Spyr1] Length = 291 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 123/259 (47%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G I+ A+ V ++ AGRTDSGVHA QV Sbjct: 13 VRLRLDIAYDGTDFAGWATQAGQRTVAGVIDDALSTVFRTPMLTRAAGRTDSGVHATGQV 72 Query: 62 AHFDLVREWVPVILCKALNAY------------LKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ + +P + + A +++ + + + F ARFSA+R Sbjct: 73 AHVDIPTDALPHAYPRTVRAGEAEFGPLVRRLGRMLTEDVRVRGIVRAAPGFDARFSALR 132 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y+YR+ T + E P+ LD + M AAQ+++G HDF F H ++ Sbjct: 133 RHYVYRLTTAPYGVEPSEARFVTAWPRPLDVDAMAGAAQNVLGLHDFAAFCR-HRDGATT 191 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + D G+ I + V A +F +RS VG+L VG+ + T + L A+ R Sbjct: 192 IRELQRLDCVRDGDRISVHVSADAFCWNMVRSLVGALLAVGEHRRDDTWCVQLLHARHRS 251 Query: 229 ECGPLAPPEGLYFDSVEYS 247 AP GL V+Y Sbjct: 252 SDFAAAPARGLTLVGVDYP 270 >gi|225020488|ref|ZP_03709680.1| hypothetical protein CORMATOL_00495 [Corynebacterium matruchotii ATCC 33806] gi|224946877|gb|EEG28086.1| hypothetical protein CORMATOL_00495 [Corynebacterium matruchotii ATCC 33806] Length = 290 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 117/259 (45%), Gaps = 15/259 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW RQ + ++Q +E A+ LV + + + AGRTD+GVHA+ Q Sbjct: 5 RIRLDLAYDGTHFHGWARQGHSELRTVQQVLEDALTLVLRQPIALTVAGRTDAGVHAVAQ 64 Query: 61 VAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD+ R + + + +I F ARFSA+RR Y+Y Sbjct: 65 VAHFDVPAAALDTRSIAGDPGRLVRRLARLLPTDVRVHAATIAPPDFDARFSALRRHYVY 124 Query: 115 RIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R+ T L PK +D M+ A L+G HDF F H ++ IR + Sbjct: 125 RLTTHPRGALPTRVTDTAHHPKPVDLAAMQACAAELIGLHDFAAFCR-HRDGATTIRDLQ 183 Query: 174 HFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 F N + E V A +F + +RS VG +VG+GK + L R Sbjct: 184 EFTWNDISTPIEPDTFEAHVTADAFCWSMVRSLVGCCLVVGEGKRPAGFATSLLAETSRS 243 Query: 229 ECGPLAPPEGLYFDSVEYS 247 P+AP GL V+Y Sbjct: 244 ALVPVAPAAGLSLVGVDYP 262 >gi|153854831|ref|ZP_01996054.1| hypothetical protein DORLON_02059 [Dorea longicatena DSM 13814] gi|149752533|gb|EDM62464.1| hypothetical protein DORLON_02059 [Dorea longicatena DSM 13814] Length = 245 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 9/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVH 56 M + IEY+GS Y GW R ++G++I I + + +T E + + RT+ GVH Sbjct: 1 MRNIKLTIEYDGSRYQGWTRLGKDESGNTISNKITEVLKKMTEEDDLELFCGCRTEVGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q+A+F + LN YL I+I+++ V ++FHA+ +A ++Y+YR+ Sbjct: 61 AYAQIANFKTSSSTTTQNIKHYLNRYL--PMDIAIIDVKEVPERFHAQLNATSKTYVYRM 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P ++ + + D M+ AA+ L GRHDF F S + S +R I D Sbjct: 119 TIDDVPSVFDRKYTYHCYRIPDKRLMQQAAEKLTGRHDFRNFSSAK-KTKSTVREIFDID 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ++I + A FLH R VG+L +G G + D++ E P Sbjct: 178 IYGDIEEMQILIHADDFLHNMARIIVGTLMDIGLGNRSVQDIDDIFAGI--LEASAPCDP 235 Query: 237 EGLYFDSVEY 246 +GLY + Y Sbjct: 236 KGLYLQEITY 245 >gi|307128564|ref|YP_003880594.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri CARI] gi|306483026|gb|ADM89896.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri CARI] Length = 252 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y+G+ ++GWQ Q S+Q +IEK + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGALFYGWQIQNKNISVQETIEKCLSFLLKKNIKIIGAGRTDAGVHAIQMF 60 Query: 62 AHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD + + + LN +L I I N+ V + HARF+ + R Y YRI Sbjct: 61 AHFDFNQNLLLIDKNIKFKLNYFL--PLNIKIKNIFSVKNKIHARFNVLSRVYEYRIFLE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P L+ WL K + + + A+ L D+++F + I I + Sbjct: 119 KNPFYLDTSWQWLYKKKIKIKILNKGAKLLKKYKDYSSFCKKKSNNKTYICHIFYAKWIL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +RS VG+L +G K T D + ++A++R G AP +GL Sbjct: 179 KKKKLFFYIEANRFLRNMVRSIVGTLIELGIKKITLKDFIQIIEAKNRHLAGISAPAKGL 238 Query: 240 YFDSVEYS 247 + + Y Sbjct: 239 FLIKINYP 246 >gi|305680135|ref|ZP_07402945.1| tRNA pseudouridine synthase A [Corynebacterium matruchotii ATCC 14266] gi|305660755|gb|EFM50252.1| tRNA pseudouridine synthase A [Corynebacterium matruchotii ATCC 14266] Length = 290 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 79/259 (30%), Positives = 116/259 (44%), Gaps = 15/259 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW RQ + ++Q +E A+ LV + + + AGRTD+GVHA Q Sbjct: 5 RIRLDLAYDGTHFHGWARQGHSELRTVQQVLEDALTLVLRQPIALTVAGRTDAGVHAAAQ 64 Query: 61 VAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD+ R + + + +I F ARFSA+RR Y+Y Sbjct: 65 VAHFDVPAAALDTRSIAGDPGRLVRRLARLLPTDVRVHAATIAPPDFDARFSALRRHYVY 124 Query: 115 RIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R+ T L PK +D M+ A L+G HDF F H ++ IR + Sbjct: 125 RLTTHPRGALPTRVTDTAHHPKPVDLAAMQACAAELIGLHDFAAFCR-HRDGATTIRDLQ 183 Query: 174 HFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 F N + E V A +F + +RS VG +VG+GK + L R Sbjct: 184 EFTWNDISTPIEPDTFEAHVTADAFCWSMVRSLVGCCLVVGEGKRPAGFATSLLAETSRS 243 Query: 229 ECGPLAPPEGLYFDSVEYS 247 P+AP GL V+Y Sbjct: 244 ALVPVAPAAGLSLVGVDYP 262 >gi|227832275|ref|YP_002833982.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] gi|262183869|ref|ZP_06043290.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] gi|227453291|gb|ACP32044.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] Length = 286 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 85/262 (32%), Positives = 123/262 (46%), Gaps = 20/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQK G ++Q ++E+ + +V V + AGRTD+GVHA Q Sbjct: 5 VRLRLDLAYDGTDFHGWARQKGGLRTVQQTVEEKLSMVLRHPVELTVAGRTDAGVHASGQ 64 Query: 61 VAHFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAHFD R + P L + L L + + + V F ARFSA+RR Y Sbjct: 65 VAHFDTTRAALSQRSIDGEPHKLVRRLAKLL--PVDVRVHACTEVSPDFDARFSALRRHY 122 Query: 113 LYRIITRQAPLALEKGR--AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +YRI T + R A + K +D + M+ AA LVG +DF F A + IR Sbjct: 123 VYRITTHPRGALPTRARDTATWL-KPVDLDLMQAAADRLVGLNDFVAFCKAKPHA-TTIR 180 Query: 171 TIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F+ + L E V A +F + +R VG VG+G + L Sbjct: 181 ELLAFEWKDVSTPAEPQLYEAHVSADAFCWSMVRCLVGCCLRVGEGSRDVEFAGQMLNET 240 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R PLAP GL V+Y Sbjct: 241 SRSSQIPLAPAAGLSLVGVDYP 262 >gi|168009447|ref|XP_001757417.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691540|gb|EDQ77902.1| predicted protein [Physcomitrella patens subsp. patens] Length = 299 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 119/239 (49%), Gaps = 11/239 (4%) Query: 18 WQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDLVREW-VPV 73 WQ QKN SIQ +E A+ T + + + GAGRTD+GVHA QVAHF + Sbjct: 36 WQIQKNYVSIQEKVEDALSKFTRLPRDELKLVGAGRTDAGVHAWGQVAHFTTPTCFCDLE 95 Query: 74 ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 L +LN L I IL +S V FHAR+SA R++Y Y+ + A+ I Sbjct: 96 PLHTSLNGIL--PPDIRILEVSSVQPDFHARYSACRKTYQYKAYVSPVMDPFQHAYAYHI 153 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 S++ M AA + VG H+F+ F S + +R + F V+S G + V + Sbjct: 154 KNSVNIAAMEEAASYFVGTHNFSAFANHSADTASRDTLRDLLSFTVSSIGPQLLFEVEGK 213 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG---PLAPPEGLYFDSVEYS 247 SF++ Q+R+ VG L VG + + L +DR+E P+AP GLY SV Y Sbjct: 214 SFMYKQVRNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYLMSVGYD 272 >gi|326383234|ref|ZP_08204922.1| tRNA pseudouridine synthase A [Gordonia neofelifaecis NRRL B-59395] gi|326197984|gb|EGD55170.1| tRNA pseudouridine synthase A [Gordonia neofelifaecis NRRL B-59395] Length = 296 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 123/255 (48%), Gaps = 14/255 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I Y+G+ + GW Q ++ +IE+A+ V + + AGRTD+GVHA QVA Sbjct: 16 RLRLLIGYDGTDFSGWATQPGRRTVCETIEQALGTVLRAPIRLTVAGRTDAGVHAAGQVA 75 Query: 63 HFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 H D+ + P L + L L D + + + V + F ARFSA+ R+Y Y Sbjct: 76 HCDVPAASLRTRSIDGDPARLVRRLAKML--PDDVRVKRIEAVSEDFDARFSALARTYEY 133 Query: 115 RIITRQ--APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 R+ A L + A + LD E M A+ LVG +DF F + S+ IR + Sbjct: 134 RLTDAPWGAEPTLARITADWT-RPLDVEAMNTASAGLVGLNDFAAFCRYR-EGSTTIREL 191 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 FD G ++ V+A +F + +RS VG++ VGDG+ + L + R P Sbjct: 192 QRFDWRREGPVVVGTVIADAFCWSMVRSLVGAVASVGDGRRSLGWCTDLLDQRARSAQVP 251 Query: 233 LAPPEGLYFDSVEYS 247 +A GL V+Y Sbjct: 252 VAQARGLSLIGVDYP 266 >gi|148238745|ref|YP_001224132.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7803] gi|147847284|emb|CAK22835.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7803] Length = 297 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 116/248 (46%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+ G+S+QG +E+AI + V AGRTD+GVHA Q Sbjct: 22 QRIAISLQYAGSFFCGWQRQRQGTSVQGVLEQAIADLDPHRPVHAVAAGRTDAGVHAAGQ 81 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L +I + +HA +SA R Y Y + + Sbjct: 82 VVHFDSSGPIPASRWAPALNGRL--PASIRVREAVERPLSWHACYSATYRRYRYTLYNGR 139 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P W + LD + M A + ++G HDF F+ + + TI V Sbjct: 140 RPNLFLAPWTWHRYQARLDEQAMAAALEGMLGSHDFAAFQRAGSRRAHSRTTIQDVSVQR 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI++ V A FL+ +R +G L VG+ + T E+ + + R E APP+GL Sbjct: 200 RGDLIDLEVQASGFLYGMVRLMMGQLVAVGEHRLTPDQFERRWRERRRDEVKDGAPPQGL 259 Query: 240 YFDSVEYS 247 Y Sbjct: 260 CLLRAGYE 267 >gi|294783832|ref|ZP_06749154.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA] gi|294479644|gb|EFG27423.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA] Length = 246 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 119/250 (47%), Gaps = 7/250 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MERKNIKIEFRYDGSRYYGFQRQPDKVTVQGEIEKILKIVTKEDINLISAGRTDRGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 +QV++F L L I IL++ VDK F+AR A R Y+Y I Sbjct: 61 QQVSNFYTSSNIPVEKYKYLLTRAL--PKDIDILSVEEVDKNFNARHDAKMREYIYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + +D E ++ +G HDF FR C + IR I D+N Sbjct: 119 EKNP--FEARYCKFVKNKIDVEKLKKIFSSFLGIHDFRNFRLSDCVSKITIREIYSIDIN 176 Query: 179 SF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 F N ++I + +FL +Q+R VG+ V G +E L + L E Sbjct: 177 YFSENKLKIYIRGSAFLKSQVRIMVGTALEVYYGNLPENHIELMLNDFSKDYKKNLVEAE 236 Query: 238 GLYFDSVEYS 247 GLY + + YS Sbjct: 237 GLYLNKIYYS 246 >gi|116075742|ref|ZP_01473001.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9916] gi|116067057|gb|EAU72812.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9916] Length = 278 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 113/247 (45%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+ G+S+Q ++++AI + V AGRTD+GVHA Q Sbjct: 3 RRIALSLQYEGSAFCGWQRQRQGNSVQAALDEAISQLDPIRPVHTVAAGRTDAGVHAAGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L TI + +HA +SA R Y Y I + Sbjct: 63 VVHFDCCGPIPAWRWAPALNGRL--PGTIRVREAVERPLDWHACYSATYRRYRYTIYNGR 120 Query: 121 APLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P W + LD M A Q L+G HDF F + + TI + Sbjct: 121 RPNLFLTPWTWHRYQARLDDSLMGEALQGLLGLHDFGAFMRAGSRRAHSRTTIQDVSLER 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R +G L VG+ + + E+ + + R E APP+GL Sbjct: 181 EGDLVTVEIQASGFLYGMVRLLMGQLVAVGEHRLSLEAFERRWRERRRSEVKDAAPPQGL 240 Query: 240 YFDSVEY 246 Y Sbjct: 241 CLLRAGY 247 >gi|300742028|ref|ZP_07072049.1| tRNA pseudouridine synthase A [Rothia dentocariosa M567] gi|300381213|gb|EFJ77775.1| tRNA pseudouridine synthase A [Rothia dentocariosa M567] Length = 316 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 127/280 (45%), Gaps = 35/280 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + Y+G+ + GW RQ N ++QG +E A+ LV V AGRTD+GVHA Q Sbjct: 4 QRVRIDCAYDGTWFSGWARQPNLVTVQGVLEDALELVLRTHHRVTVAGRTDAGVHAQAQT 63 Query: 62 AHFDL-VREWVPVILCKALN----------------------AYLKISDTIS-------- 90 H D+ W + L L I + + Sbjct: 64 IHLDIATETWQKLTGRDGLADPAESLKRKVSGALKRTLAQAEHTLGIPERMRGLLQGSLV 123 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQ--APLALEKGRAWLIPKSLDCENMRIAAQH 148 + + V + F ARFSA R Y YRI+ Q +P L + AW IP+SLD E++ AA Sbjct: 124 LHQVQPVPQDFDARFSATGRRYTYRILDGQGSSPDPLHRAYAWCIPESLDLEDLNKAAHE 183 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKL 207 L G HDF +F + ++ IR + + + +IE V A +F H +RS +G+L L Sbjct: 184 LTGLHDFLSFCKPR-EGATTIRELRRIYLTRHDDGVIEATVEADAFCHHMVRSLIGALVL 242 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G GK T L + L+ R +APP GL ++Y Sbjct: 243 YGTGKRTQAWLRERLENPQRDASLIMAPPHGLALAHIDYP 282 >gi|300779794|ref|ZP_07089650.1| tRNA-pseudouridine synthase I [Corynebacterium genitalium ATCC 33030] gi|300533904|gb|EFK54963.1| tRNA-pseudouridine synthase I [Corynebacterium genitalium ATCC 33030] Length = 303 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 118/267 (44%), Gaps = 24/267 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-------SSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 +R + I Y+G+ + GW RQ ++QG +E A+ L+ V + AGRTD+G Sbjct: 18 VRLRLDIAYDGTRFHGWARQAAAPGEETPVRTVQGELEDALSLILRHPVELTVAGRTDAG 77 Query: 55 VHALRQVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 VHA QVAH D+ + P L + L L+ + + ++ + F ARFS Sbjct: 78 VHATGQVAHADVPKHALDQRSIVGEPEKLTRRLARLLE--PDLRVTAVTEAPRDFDARFS 135 Query: 107 AIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R+Y YR+ T A P L + K +D ++ A LVG +D+ F A Sbjct: 136 ALTRTYRYRVTTNTAGPNPLRRTDTAAWTKKIDLHAVQETATALVGLNDYAAFCKPRPHA 195 Query: 166 SSPIRTIDHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + IR I F L E + A +F +R+ V + VG G + + Sbjct: 196 -TTIRDIHSFTWADVSTPEEPELYEATITADAFCWHMVRALVATCLDVGSGARDVSWAKT 254 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 L A +R LAP GL V+Y Sbjct: 255 LLAAHERDPLVKLAPANGLTLIRVDYP 281 >gi|315104023|gb|EFT75999.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA2] Length = 279 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L I + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLT--PDIVVTSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + + LD + + A L+G DF F H + ++ IR + Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAFCK-HREGATTIRPLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLTLEEVGYP 250 >gi|237736308|ref|ZP_04566789.1| tRNA pseudouridine synthase A [Fusobacterium mortiferum ATCC 9817] gi|229421656|gb|EEO36703.1| tRNA pseudouridine synthase A [Fusobacterium mortiferum ATCC 9817] Length = 243 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+GS ++G+QRQ N ++QG IEK + +V + + + +GRTD GVHAL Q Sbjct: 1 MRNIKISYRYDGSMFYGFQRQPNKRTVQGEIEKLLNVVLKDEIDMVSSGRTDRGVHALIQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L L + I +L++ VD +F++RF A +R Y Y I Sbjct: 61 VSNFYTTSTIPLDRLKYVL--MRGLPLDIELLDIEEVDIEFNSRFDAQKRGYTYIISWE- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + K ++ E + LVG HDF FR C + + IR I +V Sbjct: 118 -RDPFKNRYETYVNKEIEAERFQKILDILVGVHDFNNFRMSDCGSKTSIREIYSIEVKKI 176 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G N I + ++ SFL +QIR +G+ + G S +E+ L+ D+K +A P GL Sbjct: 177 GSNRISVEILGSSFLKSQIRIIIGTALNIYFGNLPSNYMEEMLKNPDKKYLKKVAEPNGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YLSKVDY 243 >gi|226227135|ref|YP_002761241.1| tRNA pseudouridine synthase A [Gemmatimonas aurantiaca T-27] gi|226090326|dbj|BAH38771.1| tRNA pseudouridine synthase A [Gemmatimonas aurantiaca T-27] Length = 259 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 110/248 (44%), Gaps = 6/248 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 ++ +Y+G + GWQRQ + ++QG +E+ + ++G V GAGRTD+GVHA Q Sbjct: 6 ILLVTQYDGGRFAGWQRQPDVRTVQGDMERVLGRLSGGLYVPAVGAGRTDAGVHAHGQGV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ-A 121 + +W L +A+NA L D I + ++ +FH R+SA R Y Y I T + A Sbjct: 66 GVRMPPQWTAPRLRRAMNALL--PDDIWVAAAYQMEPEFHPRYSATARRYGYLIGTDELA 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSPIRTIDHFDVNS 179 + W + + LD E + A L+G H F F H I H Sbjct: 124 SSPFRRRHEWALHRPLDVEALHGEAAELLGEHTFRAFAIAHTAPVDDHHRCIIHHAAWVP 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 V A FLH +R VG++ V G+ + + L D + P AP GL Sbjct: 184 REGGWVFEVSANRFLHHMVRFLVGTMVDVALGRRPRGTIARLLVTPDNADTSPPAPAHGL 243 Query: 240 YFDSVEYS 247 V Y Sbjct: 244 SLREVTYP 251 >gi|289523335|ref|ZP_06440189.1| tRNA pseudouridine synthase A [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503027|gb|EFD24191.1| tRNA pseudouridine synthase A [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 268 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 R+ ++ Y+GS + G+QRQK+ +++ ++E+A+ L+ G V V GAGRTD GVHAL Q Sbjct: 6 RFAALLSYDGSAFHGFQRQKDLPTVELALEEALNLLDKKGRRVKVTGAGRTDRGVHALGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ P L KAL A L +I + + VD FHAR SA+ R Y Y I Sbjct: 66 VVHFDISWPHGPTALRKALEANL--PSSIGVYEVVPVDFAFHARRSALWRKYAYFIWKGD 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L W + D + + + G HDF F + S RTI + Sbjct: 124 CRLPHLGRYVWWNRRGWDMDLAKKFLTMIEGFHDFGAFCRKADRPSDARRTIMEARIEEK 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+++ V RSFL +R VG++ + G+ + ++ + L R E GP AP +GL+ Sbjct: 184 GPLLKVSVTGRSFLTNMVRIIVGTMDEIATGRKSLEEVCRLLDGGSRGEAGPTAPAKGLF 243 Query: 241 FDSVEYS 247 V Y Sbjct: 244 LWEVRYD 250 >gi|289669396|ref|ZP_06490471.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 257 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 133/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADGQVQVICAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ V FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARREPRGWM--LGTTARLPPSIAVRWCVPVADDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPALYRQTVSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRNLQAIHVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR G APP+GL Sbjct: 179 IGEVVEVQVQANAFLHHMVRNIVGSLILVGTGERPADWIATLLAGRDRTVAGQTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|50843266|ref|YP_056493.1| tRNA pseudouridine synthase A [Propionibacterium acnes KPA171202] gi|289424889|ref|ZP_06426668.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK187] gi|62901286|sp|Q6A6S8|TRUA_PROAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50840868|gb|AAT83535.1| tRNA pseudouridine synthase A [Propionibacterium acnes KPA171202] gi|289154588|gb|EFD03274.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK187] gi|313763186|gb|EFS34550.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL013PA1] gi|313793310|gb|EFS41368.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA1] gi|313801047|gb|EFS42315.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA2] gi|313828418|gb|EFS66132.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL063PA2] gi|313838001|gb|EFS75715.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL086PA1] gi|314914385|gb|EFS78216.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA4] gi|314917708|gb|EFS81539.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA1] gi|314919564|gb|EFS83395.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA3] gi|314930155|gb|EFS93986.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL067PA1] gi|314957174|gb|EFT01278.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL027PA1] gi|314957815|gb|EFT01918.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA1] gi|314963491|gb|EFT07591.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL082PA1] gi|314969927|gb|EFT14025.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA1] gi|315077220|gb|EFT49285.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL053PA2] gi|315097933|gb|EFT69909.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL059PA2] gi|315100698|gb|EFT72674.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL046PA1] gi|315106086|gb|EFT78062.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL030PA1] gi|315109179|gb|EFT81155.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL030PA2] gi|327451475|gb|EGE98129.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA3] gi|327451552|gb|EGE98206.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL092PA1] gi|327451838|gb|EGE98492.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL083PA2] gi|328752053|gb|EGF65669.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA1] gi|328755550|gb|EGF69166.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL025PA2] Length = 279 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLT--PDVVVKSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAFCK-HREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 KRLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLTLEEVGYP 250 >gi|331699143|ref|YP_004335382.1| tRNA pseudouridine synthase A [Pseudonocardia dioxanivorans CB1190] gi|326953832|gb|AEA27529.1| tRNA pseudouridine synthase A [Pseudonocardia dioxanivorans CB1190] Length = 263 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y+G+ + GW Q ++ G + A+ + V + AGRTD+GVHA QV Sbjct: 1 MRYRLDIAYDGTDFSGWAPQPGRRTVHGVLTDALQRLVRAPVALTVAGRTDAGVHASGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL E P L + + + + ++ V +F ARFSA+RR Y+YR+ T Sbjct: 61 AHVDLSGELEPDRLVRR--LARLLPPDVRVRAVTAVPPEFDARFSALRRHYVYRVTTAPW 118 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L P +D + + A+ L+G HDF F + ++ IR + F + Sbjct: 119 GADPLRARDTLAWPHPIDLDAVARASTALLGEHDFAAFCRRR-EGATTIRELLRFAWSVD 177 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++ + A +F H+ +RS VG++ VG G+ L +R +AP GL Sbjct: 178 ADGVVRAELSADAFCHSMVRSLVGAMLDVGRGRRAVEWPAGLLDRAERASDVAVAPAHGL 237 Query: 240 YFDSVEYS 247 V+Y Sbjct: 238 TLVGVDYP 245 >gi|327332268|gb|EGE74004.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL097PA1] Length = 279 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLT--PDVVVKSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAFCK-HREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 KRLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLTLEEVGYP 250 >gi|238916468|ref|YP_002929985.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238871828|gb|ACR71538.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 245 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 7/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M Y + IEY+G Y GWQR + ++I+ + + I +TGE V ++ RT+ GVHA Sbjct: 1 MYNYRIEIEYDGGRYDGWQRLGKDASTNTIESRLCEIIARMTGETVDMYAGSRTEKGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L Q A+F L +E + + LN YL I++++++ D++FH++ +A + Y YR+ Sbjct: 61 LCQTANFKLEKEVKAIEIKNYLNRYL--PRDIAVMSVTEADERFHSQLNAKSKIYEYRLD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T + A+ D + MR AA + G+HDF F + ++ S +TI V Sbjct: 119 TGNVANVFRRKYAYHTFDKPDFDAMRKAAGYFEGKHDFKAFTTAK-KSKSTEKTIKKISV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G IR+ A FLH R +G + VG+G D+++ L ++ + P A Sbjct: 178 EYEGARAYIRIEADDFLHNMARYIIGMMLDVGNGIKKPEDVKRCLDGENIQMSLP-AESY 236 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 237 GLFLVKVVY 245 >gi|325915522|ref|ZP_08177833.1| pseudouridylate synthase I [Xanthomonas vesicatoria ATCC 35937] gi|325538238|gb|EGD09923.1| pseudouridylate synthase I [Xanthomonas vesicatoria ATCC 35937] Length = 257 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 95/248 (38%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V + V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASVQAALSSVADAPIQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ V FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDALRQPRGWM--LGTTARLPPSIAVRWCVPVADDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD E M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPALYRQTLSWERRPLDAEAMHAAAQALLGENDFSAFRSVQCQALHARRNLQAITVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E+RV A +FLH +R+ VGSL L+G G+ + + L +DR GP APP+GL Sbjct: 179 IGEVVEVRVQANAFLHHMVRNIVGSLILIGTGEQPTDWIATLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|257463955|ref|ZP_05628340.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] gi|317061478|ref|ZP_07925963.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] gi|313687154|gb|EFS23989.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] Length = 242 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 126/246 (51%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +Y+GS + G+QRQ N ++QG IEK++F + E + + +GRTD GVHA++Q Sbjct: 1 MRNIKISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILREKIDLTSSGRTDRGVHAIQQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L AL+ L + I +L + VD +FHARFSA RSY Y I ++ Sbjct: 61 VSNFFTAVNIPSDRLFYALSRNL--PEDILLLQVEEVDSEFHARFSAKTRSYRYCITWKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E + + ++ Q +GRH+F FR ++P+R I V Sbjct: 119 NP--FEHRYKAYVKEKIESTEFLKILQVFIGRHNFQNFRLQDSSFANPMREIYSISVEEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + I +VA +FL +QIR +G+ V GK + + L+ + + LA GLY Sbjct: 177 ENGMNIDIVANAFLKSQIRIMIGTALQVYFGKVEGDRITRMLEELETEFPKYLADSSGLY 236 Query: 241 FDSVEY 246 +EY Sbjct: 237 LYRIEY 242 >gi|145356339|ref|XP_001422390.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582632|gb|ABP00707.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 286 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 120/260 (46%), Gaps = 16/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 + Y + I Y+G Y G+Q Q ++ +IQ +E+A+ +TG E + + AGRTD+GVHA Sbjct: 16 VTYALKISYDGERYNGFQYQGEDVPTIQRELERALAKLTGIDRERLRLGAAGRTDAGVHA 75 Query: 58 LRQVAHFDLVREW--VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QVAHF + KA+N L I + FH+RF A ++Y Y Sbjct: 76 RGQVAHFYCEKSLGEDLTRCQKAMNGML--PKDIRVDAFWEPHPLFHSRFHASGKTYHYY 133 Query: 116 IITRQAPLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS----PIR 170 + R + A + + D E +R AAQ VG D+ F + S+ R Sbjct: 134 VDARATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFCNTSRDKSNEDRNTTR 193 Query: 171 TIDHFDVNSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 TI FDV LI + V FL+ Q+R+ VG+L +V GK L ++ +DR Sbjct: 194 TIRRFDVFEDAADDGLIRLEVEGDGFLYRQVRNMVGALLVVASGKHDLAYLRTLIETKDR 253 Query: 228 KECGPLAPPEGLYFDSVEYS 247 AP GL+ V Y Sbjct: 254 SRAPMGAPARGLFLHEVFYP 273 >gi|89953446|gb|ABD83318.1| Fgenesh protein 88 [Beta vulgaris] Length = 278 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 117/239 (48%), Gaps = 11/239 (4%) Query: 18 WQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALRQVAHFDLVREWV-PV 73 WQ Q + ++Q +IEKA+ +T + + V GAGRTD+GVHA QVAHF + Sbjct: 26 WQYQASPPTVQCAIEKALTKITHLDRKELSVVGAGRTDTGVHAWGQVAHFFTPFNYDSLD 85 Query: 74 ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 + A N L I + +S QFHARFSA + Y Y I + + Sbjct: 86 EVHAAFNGLL--PSDIRVREVSPASPQFHARFSAKGKIYRYSIYNSSFMDPFLRYHVYHS 143 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 L+ M AA++ G+HDFT F + + + PI+TI FDV G L+E+ V Sbjct: 144 TYKLNAAVMAEAARYFTGKHDFTAFANAIRNDRVRDPIKTISRFDVTERGPLLELEVEGS 203 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLA--PPEGLYFDSVEYS 247 FL+ Q+R+ V L +G + + L+ ++R+E PP GL SV+Y+ Sbjct: 204 GFLYRQVRNMVALLLQIGREAIPPDIVPEILETKNRRELAKYTKSTPPHGLSLVSVKYN 262 >gi|260579203|ref|ZP_05847093.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium ATCC 43734] gi|258602689|gb|EEW15976.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium ATCC 43734] Length = 328 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 17/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q G ++ G +++ + LVT + + AGRTD+GVHA Q Sbjct: 29 VRVRLEVAYDGTDFHGWATQSGGLRTVAGVLQEKLSLVTRHPIELVVAGRTDAGVHASGQ 88 Query: 61 VAHFDLV-------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H D+ P L + L+ L + + S+ + F ARFSA+RR Y+ Sbjct: 89 VCHADIPADAFEQRSLTRPEDLVRRLSRML--PSDVRLHGASVAPQGFDARFSALRRHYI 146 Query: 114 YRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T A P+ + +D E + A+ L+G +DF F + ++ +R + Sbjct: 147 YRVTTHPAGPVPVRARDTAAWRHPIDLEKTQAASDALIGLNDFAAFCKAR-EGATTVREL 205 Query: 173 DHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F + E V A +F + +RS VG+ VG GK L+ R Sbjct: 206 QEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGSGKRPDDFTPGLLKETKR 265 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P+AP EGL V+Y Sbjct: 266 SSAVPVAPAEGLNLVRVDYP 285 >gi|282890286|ref|ZP_06298816.1| hypothetical protein pah_c014o179 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499943|gb|EFB42232.1| hypothetical protein pah_c014o179 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 231 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 4/223 (1%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 IQ +EK I + + V V +GRTD+GVHA QVAHF E ++N L Sbjct: 3 IQEIVEKEIGKIVRQPVRVVASGRTDAGVHARGQVAHFSTNAEIDLRRFLVSINGLL--P 60 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 I + ++ V FHA++S ++Y Y + + + AW I + LD +++AA Sbjct: 61 KDIRVKDICQVPPDFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHIRQKLDLSQLQVAA 120 Query: 147 QHLVGRHDFTTFR--SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 Q VG HDFT+F + + +RTI DV + FL+ +R+ VG Sbjct: 121 QLFVGTHDFTSFANEAHREHPQNAVRTIKRVDVIMEDEGCRLEFEGDGFLYKMVRNMVGI 180 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 L V G TD+ A+DRK+ G APP GL+ V + Sbjct: 181 LIEVATGYRPITDIPAIFAAKDRKKAGKAAPPHGLFLHQVNFP 223 >gi|291298744|ref|YP_003510022.1| tRNA pseudouridine synthase A [Stackebrandtia nassauensis DSM 44728] gi|290567964|gb|ADD40929.1| tRNA pseudouridine synthase A [Stackebrandtia nassauensis DSM 44728] Length = 300 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 120/249 (48%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G + A+ + G+ + AGRTD+GVHA QV Sbjct: 22 VRLRLDICYDGTDFAGWAFQPGQRTVAGEVFTALSALFGQPEGLTVAGRTDAGVHATGQV 81 Query: 62 AHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRI-ITR 119 AH D+ + L + + I ++ V +F+ARFSA+ R Y+YR+ T Sbjct: 82 AHVDVPAAAWARYRDRPLWRLRGILPPDVRITAITEVSSEFNARFSALSRRYVYRVADTV 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + P+ +D + M AA LVG HDF F + ++ +R + + Sbjct: 142 WGVNPLRRLDTVAWPRPVDLDVMNAAATVLVGEHDFAAFCKRR-EGATTVRALRTVRWDR 200 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I VVA +F H+ +RS VG++ VG+G+ + L L +R +AP G Sbjct: 201 DADGIARATVVADAFCHSMVRSLVGAMLAVGEGRRDAAWLAALLTRGERSGEVLVAPANG 260 Query: 239 LYFDSVEYS 247 L VE+ Sbjct: 261 LTLVEVEFP 269 >gi|225568181|ref|ZP_03777206.1| hypothetical protein CLOHYLEM_04255 [Clostridium hylemonae DSM 15053] gi|225162900|gb|EEG75519.1| hypothetical protein CLOHYLEM_04255 [Clostridium hylemonae DSM 15053] Length = 245 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 9/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVH 56 M + IEY+GS Y GW R +++ +++ I + + +TGE I+ ++ RT+ GVH Sbjct: 1 MRNIRLTIEYDGSRYQGWCRLGKEESNNTVSNKIIEVLRKMTGEYIIELNCGCRTEVGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QVA+F + + + LN YL I+I N+ V +FHA+ +A ++Y+YR+ Sbjct: 61 AYAQVANFKTDSDMDILEIKHYLNRYL--PMDIAITNVEDVPDRFHAQLNATSKTYVYRM 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P ++ + K D + M+ A+ +G+HDF F ++ + ++ I + Sbjct: 119 TIDDVPSVFDRKYTYHCFKIPDKKLMQQASLLFIGKHDFKNFSTVKKN-KTTVKEIFEIE 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ++I + A FLH R VG+L +G G D+E+ A + P Sbjct: 178 VYGDTEEMQILIHADDFLHNMARLVVGTLLEIGFGTRKKEDIEEIF-AGTKTPSSP-CDA 235 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 236 KGLYLQEVSY 245 >gi|120402449|ref|YP_952278.1| tRNA pseudouridine synthase A [Mycobacterium vanbaalenii PYR-1] gi|119955267|gb|ABM12272.1| tRNA pseudouridine synthase A [Mycobacterium vanbaalenii PYR-1] Length = 299 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 121/261 (46%), Gaps = 18/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G+I+ A+ V VV AGRTDSGVHA QV Sbjct: 21 VRLRLDIAYDGTDFAGWATQAGQRTVAGAIDDALSTVFRTPVVTRAAGRTDSGVHATGQV 80 Query: 62 AHFDLVREWVPVI--------------LCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P L + L L + + + ++ F ARFSA Sbjct: 81 AHVDVPADALPYAYPRTTRPGEAEFGPLVRRLGRML--PEDVRVREITRAAPGFDARFSA 138 Query: 108 IRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 +RR YLYR+ T + E P+ LD M AA+ LVG HDF F H + Sbjct: 139 LRRHYLYRLSTAPYGVEPAEARFVTPWPRPLDVAAMAAAARELVGLHDFAAFCR-HRDGA 197 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + IR + D G+ +E+ V A +F +RS VG+L VG+ + + L A Sbjct: 198 TTIRELQRLDCVRDGDRVEVHVSADAFCWNMVRSLVGALLAVGEHRRDAAWCAALLDATG 257 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R AP GL V+Y Sbjct: 258 RSSDFAAAPARGLTLVGVDYP 278 >gi|68536845|ref|YP_251550.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium K411] gi|68264444|emb|CAI37932.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium K411] Length = 328 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 17/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q G ++ G +++ + LVT + + AGRTD+GVHA Q Sbjct: 29 VRVRLEVAYDGTDFHGWATQSGGLRTVAGVLQEKLSLVTRHPIELVVAGRTDAGVHASGQ 88 Query: 61 VAHFDLV-------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H D+ P L + L+ L + + S+ + F ARFSA+RR Y+ Sbjct: 89 VCHADIPVDAFEQRSLTRPEDLVRRLSRML--PADVRLHGASVAPQGFDARFSALRRHYI 146 Query: 114 YRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T A P+ + +D E + A+ L+G +DF F + ++ +R + Sbjct: 147 YRVTTHPAGPVPVRARDTAAWRHPIDLEKTQAASDALIGLNDFAAFCKAR-EGATTVREL 205 Query: 173 DHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F + E V A +F + +RS VG+ VG GK L+ R Sbjct: 206 QEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGSGKRPDDFTPGLLKETKR 265 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P+AP EGL V+Y Sbjct: 266 SSAVPVAPAEGLNLVRVDYP 285 >gi|296119322|ref|ZP_06837890.1| tRNA pseudouridine synthase A [Corynebacterium ammoniagenes DSM 20306] gi|295967714|gb|EFG80971.1| tRNA pseudouridine synthase A [Corynebacterium ammoniagenes DSM 20306] Length = 297 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 126/261 (48%), Gaps = 18/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R I Y+G+ + GW QK ++QG +E+ + ++ + + AGRTD+GVHA Q Sbjct: 15 VRLRFDIAYDGTDFHGWASQKGQLRTVQGVLEQCLTMILRHPIELTVAGRTDAGVHAAGQ 74 Query: 61 VAHFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ + P L + L + D I I ++S + F ARFSA+RR Y Sbjct: 75 VAHADVPVESLQQRSIDGEPAKLVRRLAKL--VDDDIRIHSVSFAPEGFDARFSALRRHY 132 Query: 113 LYRIITRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 +YRI T +A + R + +D + M+ AA LVG HDF F A + IR Sbjct: 133 VYRITTEEAGALPTRLRDTATWTRPVDIDLMQQAATTLVGLHDFAAFCKAKPHA-TTIRD 191 Query: 172 IDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + F S NL E V A +F + +RS VG VG+G+ +E L + Sbjct: 192 LQEFYWVDASTPSEPNLYEAHVSADAFCWSMVRSLVGCCLAVGEGRRDINFVEAMLGESE 251 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R P+A +GL V+Y Sbjct: 252 RSSSIPVAAAKGLSLVGVDYP 272 >gi|254302141|ref|ZP_04969499.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322333|gb|EDK87583.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 247 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 3 MGRKNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHAN 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 63 HQVSNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYVYIISW 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + + E + +G HDF FR C + IR I +V Sbjct: 121 EKNP--FEARHCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTIREIYQIEVK 178 Query: 179 SFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG+ I+I + +FL +Q+R VG++ + G+ ++ L R+ L E Sbjct: 179 YFGDSKIKIYIKGSAFLKSQVRIMVGTVLEIYYGRLPENHIKLMLNDFTREYKKNLVEAE 238 Query: 238 GLYFDSVEY 246 GLY + ++Y Sbjct: 239 GLYLNKIKY 247 >gi|162446996|ref|YP_001620128.1| tRNA pseudouridine synthase A [Acholeplasma laidlawii PG-8A] gi|161985103|gb|ABX80752.1| pseudouridylate synthase [Acholeplasma laidlawii PG-8A] Length = 240 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 118/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I Y+G+ Y G+Q+Q N IQ IEKA L+T + A RTD GVHAL QV Sbjct: 1 MRYKAIFSYDGTNYSGYQKQINQLGIQTVIEKAFRLMTQIDIETFAASRTDKGVHALHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E ALN L I ++ ++ V FHAR SA + Y+Y+I + Sbjct: 61 LHFDSDIELTSDQWVDALNKRL--PTDIRLMKVTPVKDNFHARHSAKSKRYIYKI--AKQ 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +G L K D + ++ +VG HDF+ F S + + PI+TI FD Sbjct: 117 PSTVFRGNHELYVKHFDIDLVKDHLHTIVGTHDFSGF-SPNKEHKPPIKTIYSFDYKETK 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + SFL +R +G++ V K LE L+ ++R+ A +GLY Sbjct: 176 THYIFSIHGNSFLRYMVRIIMGNVIAVATNKKPQNQLEILLETKNRELSAKTADAKGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 KHIYY 240 >gi|257470657|ref|ZP_05634747.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] gi|317064863|ref|ZP_07929348.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] gi|313690539|gb|EFS27374.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] Length = 242 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 115/246 (46%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++GS ++G+QRQ ++QG IEK + +V E V + AGRTD GVHAL Q Sbjct: 1 MRNIKIRYRFDGSMFYGFQRQPGKRTVQGEIEKLLDIVLREKVNMISAGRTDRGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L ALN L I I + D F++RF A R+Y Y I + Sbjct: 61 VSNFLTSSPIPVEKLKHALNKGL--PLDIEIFEVEDADIDFNSRFMAKDRAYRYVISWIK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E L+ + +D N + LVG +DF FR C + + IR I Sbjct: 119 NP--FESRYVTLVNEKIDKNNFVKILEPLVGVNDFNNFRLSDCGSKTSIREIYSITAEEK 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + I + SFL +QIR +G+ V G L+ L+ ++ +A P GLY Sbjct: 177 ENKLIINIKGNSFLKSQIRIMMGTALDVYFGNRDENYLKNMLKNPNKDFIKKVADPYGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LSEVNY 242 >gi|158317762|ref|YP_001510270.1| tRNA pseudouridine synthase A [Frankia sp. EAN1pec] gi|158113167|gb|ABW15364.1| tRNA pseudouridine synthase A [Frankia sp. EAN1pec] Length = 275 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA QV Sbjct: 9 RLRLDLAYDGTAFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAAGQV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH D+ + L + LN L + + L+ F ARFSA+ R Y+YRI Sbjct: 69 AHVDIPDDTPVGGLARRLNGVL--DRAVRVKGLAPAPDGFDARFSALSRRYVYRITDAPY 126 Query: 122 -PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + P+ LD M AA L+G HDF F + ++ +RT+ DV+ Sbjct: 127 GADPLRRFDTLASPRPLDVPAMAEAALLLLGEHDFAAFCRRR-EGATTVRTLLRLDVSRS 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I V A +F H+ +R+ G+L VG+G+ + L R + P GL Sbjct: 186 RDVILADVEADAFCHSMVRALAGALVAVGEGRRRPEWVAAVLGRGMRDPAVTVLPAHGLT 245 Query: 241 FDSVEYS 247 V Y Sbjct: 246 LVEVRYP 252 >gi|213582886|ref|ZP_03364712.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 214 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 2/199 (1%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GRTD+GVH QV HF+ +NA L I++ + V FHARFSA Sbjct: 1 GRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSAT 58 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y Y I + A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P Sbjct: 59 ARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP 118 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 R + H +V G + + + A +F+H +R+ VGSL VG + + + L A+DR Sbjct: 119 WRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDRT 178 Query: 229 ECGPLAPPEGLYFDSVEYS 247 A EGLY +V+Y Sbjct: 179 LAAATAKAEGLYLVAVDYP 197 >gi|78048428|ref|YP_364603.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924659|ref|ZP_08186097.1| pseudouridylate synthase I [Xanthomonas perforans 91-118] gi|123743895|sp|Q3BRL0|TRUA_XANC5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78036858|emb|CAJ24551.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544865|gb|EGD16210.1| pseudouridylate synthase I [Xanthomonas perforans 91-118] Length = 257 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 133/248 (53%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ+ + G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L ++ +I++ FHARFSA R Y YR++ R Sbjct: 61 QVVHFDSDARREPRGWM--LGTTARLPPSIAVRWCVPAADDFHARFSARARRYRYRLLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 119 QIRPALYRQTLSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRHLQAIHVQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 IGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQGL 238 Query: 240 YFDSVEYS 247 F Y Sbjct: 239 VFIGPLYP 246 >gi|256028207|ref|ZP_05442041.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] gi|289766139|ref|ZP_06525517.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] gi|289717694|gb|EFD81706.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] Length = 245 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 119/249 (47%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MGRKNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L S I IL++ VD+ F+AR +A R Y+Y I Sbjct: 61 HQVSNFYTSSTIPIEKYKYLLTRAL--SKDIDILSVEEVDENFNARHNAKMREYIYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + +D + VG HDF FR C + IR I +V Sbjct: 119 EKNP--FEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIREIYQIEVK 176 Query: 179 SFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG I+I + +FL +Q+R VG+ + G+ ++ L R+ L E Sbjct: 177 YFGESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIKLMLNDFTREYKKNLVEAE 236 Query: 238 GLYFDSVEY 246 GLY + + Y Sbjct: 237 GLYLNKINY 245 >gi|169630847|ref|YP_001704496.1| tRNA pseudouridine synthase A [Mycobacterium abscessus ATCC 19977] gi|169242814|emb|CAM63842.1| tRNA pseudouridine synthase A [Mycobacterium abscessus] Length = 294 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 79/261 (30%), Positives = 125/261 (47%), Gaps = 18/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q N ++ G + +A + G+ V ++ AGRTD+GVHA QV Sbjct: 16 VRLRLDIAYDGTDFAGWATQVNQRTVAGVLGEAFTTIVGDSVQLYAAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVP--------------VILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ +P L + L+ +L + +L++S F ARFSA Sbjct: 76 AHLDVPVACLPGLRGRYRPAGAPEFDRLVRRLSRFL--PSDVRVLDISRAPAHFDARFSA 133 Query: 108 IRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 +RR Y YR+ T L L + + LD + M A+++L+G DF F H + + Sbjct: 134 LRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCR-HREGA 192 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + IR + FD G + V A +F + +RS VG++ VG+G+ L + Sbjct: 193 TTIRELQRFDWGVDGQRLTAYVSADAFCWSMVRSLVGAVLAVGEGRRPVQWCVDLLNKER 252 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R AP GL V+Y Sbjct: 253 RSSDFAAAPARGLTLVGVDYP 273 >gi|315605929|ref|ZP_07880960.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 180 str. F0310] gi|315312211|gb|EFU60297.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 180 str. F0310] Length = 299 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 123/278 (44%), Gaps = 34/278 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q ++QG IE A+ + + E V AGRTD+GVHA Q Sbjct: 1 MRRLRLDLGYDGTDFRGWAAQPGLRTVQGEIEAALAMASREEVTTTVAGRTDAGVHARHQ 60 Query: 61 VAHFDL--------------VREWVPVILCKALNAYLKISD----------------TIS 90 V H DL + + + LN L + Sbjct: 61 VCHVDLSDEAWARLAPRGERSEDDAATSIVRRLNKILSGRYGERSRTRGMGVARGTCDVR 120 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 I +VD F ARFSA+ R Y YR+ AP L + + + LD + M AA L+ Sbjct: 121 IFAARVVDASFDARFSALARRYTYRVSD--APDPLARWDRLWVDEPLDDQAMNDAAAPLL 178 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 G+HDF + + ++ IR + V + RV A +F H+ +RS VG+L LVG Sbjct: 179 GQHDFLGYCRPR-EGATTIRALRTLRAVREADGTLAFRVEADAFCHSMVRSLVGALLLVG 237 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G + L A+ R P+AP GL + V+Y Sbjct: 238 SGARNIDYPARVLGARSRASAAPIAPAHGLTLEGVDYP 275 >gi|58699455|ref|ZP_00374196.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58534027|gb|EAL58285.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 201 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 123/202 (60%), Gaps = 1/202 (0%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 ++ GRTD+GVHAL QVAHFD+ +E + A+N +LK S I +LN +VD FHAR Sbjct: 1 MYCGGRTDAGVHALGQVAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHAR 59 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 FSA +R Y YRI+ R AP ALE G W + LD MR AA+HL+G+HD ++FRS C Sbjct: 60 FSAKKRYYEYRIVNRYAPAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCH 119 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 A++PIRTID D+ GN I I++ A SFLH Q+R G+L G + ++ L Sbjct: 120 AANPIRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQ 179 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R G APP GLY ++Y Sbjct: 180 CKRSAAGVTAPPFGLYLVKIDY 201 >gi|300932964|ref|ZP_07148220.1| tRNA pseudouridine synthase A [Corynebacterium resistens DSM 45100] Length = 324 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 128/260 (49%), Gaps = 16/260 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + + Y+G+ + GW Q ++QG +E+ + LVT V + AGRTD+GVHA Q Sbjct: 40 MVRVRLDVAYDGTDFHGWAAQFGLRTVQGVLEEKLSLVTRHAVQLTVAGRTDAGVHADGQ 99 Query: 61 VAHFDLV-------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VAHFD+ P L + L+ L + + S F ARFSA+RR Y+ Sbjct: 100 VAHFDVPATTFTQRSLQRPGDLVRRLSRML--PADVRVHGASEAPVGFDARFSALRRHYV 157 Query: 114 YRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T A P + + +D + ++ A++ LVG +DF F + ++ IR + Sbjct: 158 YRVTTATAGPRPVRVRDTARWRRPIDLDKVKAASEVLVGLNDFAAFCKAR-EGATTIREL 216 Query: 173 DHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F + E RV A +F + +RS VG++ VG+GK + L+ +R Sbjct: 217 QQFQWFDVSTPAEPETYEARVAADAFCWSMVRSLVGAVLTVGEGKRDGDFTAELLKQNER 276 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P+AP EGL V+Y Sbjct: 277 SSKVPVAPAEGLNLVQVDYP 296 >gi|315230173|ref|YP_004070609.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP] gi|315183201|gb|ADT83386.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP] Length = 266 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 27/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + I Y+GS ++G+QRQ +++G I + + + + E GA RTD GV A Sbjct: 1 MRIALKIAYDGSKFYGFQRQPGLRTVEGEIIRVLQKLDVIESPENANFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L V F+ + + LN +L+ I +L ++ V FH RF A + Y Y Sbjct: 61 LGNVIAFNTEN--PKLAQPRVLNHHLR---DIWVLGVAQVSDDFHPRFWAKSKIYRY--- 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +L+ + D M+ A+ VG HDF+ F + + PIR ++ ++ Sbjct: 113 -------------YLVDEGFDVNAMKECARLFVGTHDFSAFARVE-KFKDPIREVNRLEI 158 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+LI I + +SFL +R V +LKL G G + D+ K L+ + K+ P PPE Sbjct: 159 IPRGDLIIIEIEGKSFLWEMVRRIVTALKLCGFGIVETEDIRKMLEGRTDKKLPPS-PPE 217 Query: 238 GLYFDSVEYS 247 L ++Y Sbjct: 218 NLVLWEIKYE 227 >gi|301165600|emb|CBW25171.1| tRNA pseudouridine synthase A [Bacteriovorax marinus SJ] Length = 256 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 14/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 M Y +I+ Y G+ Y GWQ+Q + S +IQG +EKA+ ++ + + G+GRTDSGVHAL Sbjct: 1 MSFYKIILRYKGTQYQGWQKQPHTSQTIQGQLEKALKKISKSDEIHTIGSGRTDSGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV + E P+ L KALN++L + I ++ + F+ F A ++Y Y Sbjct: 61 GQVVRVQIPLELEPLSLLKALNSHL--PNDIECIHSENSSELFNPVFDAKDKTYKYLFSL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 AL + + +D E MR A + +G HDF F ++ SS +R I + Sbjct: 119 NGRRNALVDDSMTCLDRPMDIEKMREACELFIGEHDFADFYTVGTDISSTVRVIYDCKLH 178 Query: 178 ---------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + V FL +R VG+L +G GK DL+ AL + Sbjct: 179 LEKQQGFLGEVYPEHYIFEVKGSGFLKQMVRLMVGTLWNIGLGKVELADLKMALNSPSGA 238 Query: 229 ECGPLAPPEGLYFDSVEY 246 + +AP GLY V Y Sbjct: 239 KLAAVAPSNGLYLCEVNY 256 >gi|78189343|ref|YP_379681.1| tRNA pseudouridine synthase A [Chlorobium chlorochromatii CaD3] gi|123757011|sp|Q3AQT7|TRUA_CHLCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78171542|gb|ABB28638.1| tRNA pseudouridine synthase [Chlorobium chlorochromatii CaD3] Length = 243 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 117/247 (47%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G+ + GWQRQ ++QG+IEK + +T E V+++GAGRTD GVHA + Sbjct: 1 MRTIRLDIEYDGTDFAGWQRQSGTIPTVQGTIEKLLSQITQEEVLLNGAGRTDKGVHARQ 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L L +LN L TI I N V FHARFSA R+Y Y + Sbjct: 61 QVASCALHSSMELSRLAHSLNCLL--PPTIRICNAVHVTDDFHARFSATERTYRYFVS-- 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P AL LD M+ A +VG HDFT F + + + + Sbjct: 117 ETPSALCNRFTGCANALLDVGVMQQMAAMVVGEHDFTAFSREERDSPAKRCKVTSCRWHR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ +++ A FL + +R V ++ G G+ T + +++ AP GL Sbjct: 177 LHGMVVLQISANRFLRSMVRYLVHAMLQGGKGRLAPTLFQDMVESGTSSYRMVAAPASGL 236 Query: 240 YFDSVEY 246 + + Y Sbjct: 237 FLWRIGY 243 >gi|119356907|ref|YP_911551.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides DSM 266] gi|166228693|sp|A1BFF0|TRUA_CHLPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119354256|gb|ABL65127.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides DSM 266] Length = 258 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G+GY GWQRQ ++QG IE+ + + E + + GAGRTD GVHA Sbjct: 9 MKNIRITIEYDGTGYAGWQRQAGSFCTVQGEIERILSQILQEDIRLAGAGRTDKGVHARA 68 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A F P + ++NA L +TI I + +V + FHAR SA R Y Y + R Sbjct: 69 QIATFKSRSSLGPDRMVHSMNALL--PNTIRISDPLVVPEGFHARHSAKEREYRYFV--R 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A+ + SLD +M A +++G HDF+ F + + + Sbjct: 125 EEPSAVLGRFSGCSYGSLDLMSMNRVASYVLGEHDFSVFSKETRDRTGCLCRVISCKWFR 184 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +R+ A FL + +R + G G + + + +++ A P GL Sbjct: 185 QREFFVLRISANRFLRSMVRYLAALMIDSGKGLLSPEEAREMIESGILTRQLVPAAPNGL 244 Query: 240 YFDSVEY 246 + + Y Sbjct: 245 FLWKITY 251 >gi|237743728|ref|ZP_04574209.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1] gi|229432759|gb|EEO42971.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1] Length = 245 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 118/249 (47%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GSGY+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MGRKNIKIEFRYDGSGYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 61 HQVSNFYTSSTIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYVYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + +D + VG HDF FR C + IR I +V Sbjct: 119 EKNP--FEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIREIYQIEVK 176 Query: 179 SFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG I+I + +FL +Q+R VG + G+ + L R+ L E Sbjct: 177 YFGESKIKIYIKGSAFLKSQVRIMVGIALEIYYGRLPENHIRLMLNDFTREYKKNLVEAE 236 Query: 238 GLYFDSVEY 246 GLY + + Y Sbjct: 237 GLYLNKINY 245 >gi|78187037|ref|YP_375080.1| tRNA pseudouridine synthase A [Chlorobium luteolum DSM 273] gi|123730052|sp|Q3B3P4|TRUA_PELLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78166939|gb|ABB24037.1| tRNA pseudouridine synthase [Chlorobium luteolum DSM 273] Length = 253 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 110/248 (44%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + +EY+G+ Y GWQRQ G ++QG +E + + E V + AGRTD GVHAL Sbjct: 1 MRNIRLRVEYDGTPYAGWQRQPGGIVTVQGELEACLSRILQERVNLAAAGRTDRGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + +LN L DTI + VD +FHARFSA R Y Y ++ Sbjct: 61 QVVNFQTASSLELQRIAHSLNCLL--PDTIRVDCPQEVDMEFHARFSAAERQYRYFLM-- 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A+ A + LD M A L G HDF+ F + + ++ Sbjct: 117 EEPSAVFGRFAGCSSRPLDLPLMHSLAVTLKGIHDFSAFSREDRDGTGSLCSVRMAGWYR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL + +R VG++ +G G+ + L A A GL Sbjct: 177 HRGFLVFHIAANRFLRSMVRGLVGAMMDIGAGRLDPCSFKAMLDADAHARRVRPAAASGL 236 Query: 240 YFDSVEYS 247 + V Y Sbjct: 237 FLSRVVYP 244 >gi|83816613|ref|YP_444802.1| tRNA pseudouridine synthase A [Salinibacter ruber DSM 13855] gi|123726203|sp|Q2S4S9|TRUA_SALRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83758007|gb|ABC46120.1| tRNA pseudouridine synthase A [Salinibacter ruber DSM 13855] Length = 265 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQ Q ++QG++E+A+ V G V G+GRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTDFHGWQIQPTVPTVQGALEEAVDTVVGTACRVTGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL P L +LN D +++ + FHAR+ A RR Y Y + T+ Sbjct: 61 VAHVDLPETRDPYRLRGSLNGL--TPDAVAVRRVERAPDDFHARYDARRRRYHYHLHTQ- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--N 178 P AL + + D +R A L+GRH+F++F + + + T+ H Sbjct: 118 -PCALGRRARTPVRPVPDFGRIRAATPDLLGRHNFSSFCLTQSETENRVCTLTHLRWVDE 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + VV FLH +R+ VG+L +G K + L L A+DR+ GP PPEG Sbjct: 177 ARRGCWRVEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPEG 236 Query: 239 LYFDSVEYS 247 L ++V Y Sbjct: 237 LVLEAVRYE 245 >gi|188997613|ref|YP_001931864.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium sp. YO3AOP1] gi|188932680|gb|ACD67310.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium sp. YO3AOP1] Length = 243 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 116/244 (47%), Gaps = 5/244 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y G+ Y GWQRQKNG IQ IE + + E + + GAGRTD+GVHALRQVA Sbjct: 5 NYKLEISYIGTNYNGWQRQKNGIGIQQVIEDLLSELLEEKITLIGAGRTDAGVHALRQVA 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + + LNA L ISIL + V F+ARFSA ++YLY+I T+ P Sbjct: 65 NFKTKKHKNTKTIYTYLNAKL--PRDISILKVEEVPLSFNARFSAKGKTYLYKINTKPDP 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AW K LD M + D ++ I + + G Sbjct: 123 FLF--KLAWYYDKKLDLIKMVEGINLIKQYKDLSSLAKAGDYIRKEI-DLRELKLYFDGK 179 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I I + A FL +R G L +G G + +L+ ++ + APPEGLY Sbjct: 180 IITIEITASHFLRNMVRRIAGHLVALGRGSLSLEELKDIIEKKSPSHGKFTAPPEGLYLK 239 Query: 243 SVEY 246 +V Y Sbjct: 240 AVYY 243 >gi|311111942|ref|YP_003983164.1| tRNA pseudouridine synthase A [Rothia dentocariosa ATCC 17931] gi|310943436|gb|ADP39730.1| tRNA pseudouridine synthase A [Rothia dentocariosa ATCC 17931] Length = 327 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 129/280 (46%), Gaps = 35/280 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + Y G+ + GW RQ N ++QG +E A+ LV V AGRTD+GVHA Q Sbjct: 33 QRVRIDCAYEGTWFSGWARQPNLVTVQGVLEDALELVLRAHHRVTVAGRTDAGVHAQAQT 92 Query: 62 AHFDLVREW------------VPVILCKALN-----------AYLKISDTIS-------- 90 H D+ E L + ++ L I + + Sbjct: 93 IHLDIAAETWQKLTGRDGLADPAESLKRKVSGALKRTLAQAEHTLGIPERMRGLLQGSLV 152 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQ--APLALEKGRAWLIPKSLDCENMRIAAQH 148 + + V + F ARFSA R Y YRI+ Q +P L + AW IP+SLD E++ AA Sbjct: 153 LHQVQPVPQDFDARFSATGRRYTYRILDGQGSSPDPLRRAYAWCIPESLDLEDLNKAAHE 212 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKL 207 L G HDF +F + ++ IR + + + +IE V A +F H +RS +G+L L Sbjct: 213 LTGLHDFLSFCKPR-EGATTIRELRRIYLTRHDDGVIEATVEADAFCHHMVRSLIGALVL 271 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G GK T T L + L+ R +APP GL ++Y Sbjct: 272 YGTGKRTQTWLRERLENPQRDASLIMAPPHGLALAHIDYP 311 >gi|257453277|ref|ZP_05618576.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|317059811|ref|ZP_07924296.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|313685487|gb|EFS22322.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] Length = 245 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +Y+GS + G+QRQ ++QG IEK +F + E + + +GRTD GVHA+ Q Sbjct: 1 MKNIKISYQYDGSSFMGFQRQPEKRTVQGEIEKCLFRILKEKIDLTSSGRTDRGVHAMHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L AL+ L + I +L L K FHARFSA RSY YRI + Sbjct: 61 VSNFFTAVNIPLDKLFYALSRCL--PEDILLLELEEARKDFHARFSAKTRSYCYRITWEK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P E+ + K +D ++ + +G+H+F FR ++PIR I V Sbjct: 119 SP--FERRYKTYVKKKIDSQSFFKILEIFMGKHNFQNFRLQDDAFANPIREIYSIQVKEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I + A +FL +QIR +G+ V K S +EK L+ D++ LA P GLY Sbjct: 177 DEGMDIYIEANAFLKSQIRIMLGTAFQVYFQKVESNRIEKMLKEPDKEFPKYLADPNGLY 236 Query: 241 FDSVEYS 247 ++Y Sbjct: 237 LYHIKYD 243 >gi|14521207|ref|NP_126682.1| tRNA pseudouridine synthase A [Pyrococcus abyssi GE5] gi|14548295|sp|Q9UZZ3|TRUA_PYRAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|5458425|emb|CAB49913.1| truA pseudouridylate synthase I [Pyrococcus abyssi GE5] Length = 263 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 24/247 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I Y+G+ + G+QRQ N +++G I KA+ A RTD GV AL V Sbjct: 1 MRVAFKIAYDGTRFHGFQRQPNLRTVEGEIIKALNNSGIMYSDFKSASRTDRGVSALGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 E + LNA L + + IL+ V + FH RF A + Y Y + + Sbjct: 61 VAITTEDEKALNPMV--LNARL---EDVWILSAIEVPQDFHPRFWAKSKVYRYYLPS--- 112 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L+ E ++ +Q +G HDF+ F + +R+ID +V + G Sbjct: 113 -------------IGLEVEKVKECSQLFLGVHDFSAFSRV--DGRDTVRSIDRIEVFTLG 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLY 240 ++ I + A+SFL +R V +L+L G G+ + ++++ L+ + ++ + P APPEGL Sbjct: 158 PILIIEIEAKSFLWEMVRRIVKALELCGLGRLSCEEIKEMLEGKFEKSKKVPPAPPEGLL 217 Query: 241 FDSVEYS 247 ++Y Sbjct: 218 LVDIKYE 224 >gi|257467128|ref|ZP_05631439.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|315918259|ref|ZP_07914499.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|313692134|gb|EFS28969.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] Length = 245 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +Y+GS + G+QRQ ++QG IEK +F + E + + +GRTD GVHA+ Q Sbjct: 1 MKNIKISYQYDGSSFMGFQRQPEKRTVQGEIEKCLFRILKEKIDLTSSGRTDRGVHAMHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L AL+ L + I +L L K FHARFSA RSY YRI ++ Sbjct: 61 VSNFFTAVNIPLDKLFYALSHCL--PEDILLLELEEARKDFHARFSAKTRSYCYRITWKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P E+ + K +D ++ + +G+H+F FR ++PIR I V Sbjct: 119 SP--FERRYKTYVKKKIDSQSFFKILEIFMGKHNFQNFRLQDDAFANPIREIYSIQVKEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I + A +FL +QIR +G+ V K S +EK L+ D++ LA P GLY Sbjct: 177 DEGMDIYIEANAFLKSQIRIMLGTAFQVYFQKVESNRIEKMLKEPDKEFPKYLADPNGLY 236 Query: 241 FDSVEYS 247 ++Y Sbjct: 237 LYHIKYD 243 >gi|134103229|ref|YP_001108890.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] gi|291007979|ref|ZP_06565952.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] gi|133915852|emb|CAM05965.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] Length = 296 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 21/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHAL 58 +R + + Y+G+ +FGW +Q + ++QG +E A+ V AGRTD+GVHA Sbjct: 14 VRLRLEVSYDGTDFFGWAKQPDRRTVQGLLEDALRKQPPGRSVPRSVVVAGRTDTGVHAT 73 Query: 59 RQVAHF-------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 QV H L +P + + + +L + F ARF Sbjct: 74 GQVVHVDVVPSAPDEGGRLPLDEHGIPDLDRMRHRWNRILPGDVRVLGARVAPAGFDARF 133 Query: 106 SAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+RR Y Y++ L + + LD + + A++ L+G +DF F + Sbjct: 134 SAMRRHYRYQVSDAPWGVDPLRRRDTLSWNRPLDVDALNAASEDLLGLNDFAAFCKQR-E 192 Query: 165 ASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++ +R + F +L+ RV A +F H+ +RS VG+L +VGDG+ + T +AL+ Sbjct: 193 GATTVRELQRFSWERAEPHLLVARVSADAFCHSMVRSLVGALLMVGDGRRSRTWPAEALR 252 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 A +R +AP GL V+Y Sbjct: 253 AAERTS--TVAPAHGLTLVGVDYP 274 >gi|326332230|ref|ZP_08198510.1| tRNA pseudouridine synthase A [Nocardioidaceae bacterium Broad-1] gi|325949936|gb|EGD41996.1| tRNA pseudouridine synthase A [Nocardioidaceae bacterium Broad-1] Length = 287 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 129/266 (48%), Gaps = 23/266 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-------VVVHGAGRTDSG 54 +R + + Y+G+ + GW Q ++QG ++ A+ V V AGRTDSG Sbjct: 1 MRIRIDLAYDGTMFHGWATQPGLRTVQGELQAALATALRVPSTGERSQVWVTVAGRTDSG 60 Query: 55 VHALRQVAHFDLV-----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 VHA QVAHFD+ + L + LN L + + + F+A Sbjct: 61 VHARGQVAHFDIDADVLESSRGRSEQSPLDSLVRRLNGIL--PADLRVHRAVEAPEGFNA 118 Query: 104 RFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R Y+YRI+ A L +G + LD M +A+ LVG +DF +F Sbjct: 119 RFSALSRRYVYRIVDDPAFVDPLLRGHVLYRTRPLDLSLMNVASADLVGLNDFASFCKPR 178 Query: 163 CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + ++ IR + + + +IE V+A +F H+ +RS VG L ++G+G+ T +++ Sbjct: 179 -EGATTIRDLRQLTWDRRPDGIIEATVLADAFCHSMVRSLVGCLMVIGEGRKDVTWAKES 237 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 L A+ R P+AP GL + V Y Sbjct: 238 LAARSRSSSIPIAPANGLTLEEVAYP 263 >gi|87124988|ref|ZP_01080835.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9917] gi|86167308|gb|EAQ68568.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9917] Length = 274 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 110/242 (45%), Gaps = 4/242 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDL 66 ++Y GS + GWQRQ+ G+S+QG +EKAI + V AGRTD+GVHA QV HFD Sbjct: 1 MQYEGSSFCGWQRQRQGTSVQGELEKAIAALDPHRPVQAVAAGRTDAGVHAAGQVVHFDC 60 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 ALN L TI + +HA SA R Y Y I + P Sbjct: 61 CGPIPAQRWAPALNGRL--PGTIRVREAVERPLHWHACHSASYRRYRYTIYNGRRPNLFL 118 Query: 127 KGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 +W LD + MR L+G HDF+ F + + T+ + G+++ Sbjct: 119 APWSWHRYHCRLDEDAMRRGLDGLIGSHDFSAFMRAGSRRAHARTTVQDVSLERQGDVLI 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A FL+ +R G L VG+ + E+ + + R+E APP+GL Sbjct: 179 LEIQASGFLYGMVRLLTGQLVAVGEHRLHPQAFEQRWRQRRRQEVKEAAPPQGLCLLRAG 238 Query: 246 YS 247 Y Sbjct: 239 YP 240 >gi|319442992|ref|ZP_07992148.1| tRNA pseudouridine synthase A [Corynebacterium variabile DSM 44702] Length = 283 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 84/264 (31%), Positives = 127/264 (48%), Gaps = 20/264 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M+R + + Y+G+ + GW RQK ++QG +E+ + LV V + AGRTD+GVH Sbjct: 4 MVRVRLDVAYDGTDFHGWARQKGPQEALRTVQGVLEEKLSLVFRTPVELTVAGRTDAGVH 63 Query: 57 ALRQVAHFDLV-------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 A QVAH D+ P L + L+ L + + S F ARFSA+R Sbjct: 64 ATGQVAHVDVPASAFGQRSLEQPSDLVRRLSRML--PADVRLHGASAAAPGFDARFSALR 121 Query: 110 RSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y+YR+ T A P L S+D +++A+ LVG HDF F + S+ Sbjct: 122 RHYVYRVTTSMAGPSPLRVRDTAQWRHSVDLSAVQLASDVLVGLHDFAAFCKYR-EGSTT 180 Query: 169 IRTIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R + F+ + E VVA +F + +RS VG++ VG+G+ LQ Sbjct: 181 VRELQSFEWRDISTPTEPETYEASVVADAFCWSMVRSLVGAVLTVGEGRRDEGFASCLLQ 240 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 + R P+AP GL +V+Y Sbjct: 241 ERSRSSKVPVAPACGLNLVAVDYP 264 >gi|255637177|gb|ACU18919.1| unknown [Glycine max] Length = 370 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 136/317 (42%), Gaps = 71/317 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q N ++ G +E+A G+ V V + RT +GVHAL V Sbjct: 50 QRYLVAIEYIGTRFSGSQKQLNVRTVVGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNV 109 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ D + ++++ V FHARF A Sbjct: 110 CHVDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQE 169 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+++ P EK RAW +P+ L M+ A + LVG HDF++FR+ CQA SP Sbjct: 170 RIYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSP 229 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQI------------------------------ 198 IRT+D VN + H ++ Sbjct: 230 IRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASS 289 Query: 199 -----------RSFV-----------------GSLKLVGDGKWTSTDLEKALQAQDRKEC 230 R V G LK VG G T D+E+ L A+ Sbjct: 290 QDVGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAA 349 Query: 231 GPLAPPEGLYFDSVEYS 247 P+AP GLY V+Y Sbjct: 350 SPMAPACGLYLGEVKYD 366 >gi|260495597|ref|ZP_05815722.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33] gi|260196939|gb|EEW94461.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33] Length = 245 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 118/249 (47%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MGRKNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VDK F+AR +A R Y+Y I Sbjct: 61 HQVSNFYTSSTIPIEKYKYLLTRAL--PNDIDILSVEEVDKNFNARHNAKMREYVYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + +D + VG HDF FR C + IR I +V Sbjct: 119 EKNP--FEARYYKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIRKIYQIEVK 176 Query: 179 SFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG I+I + +FL +Q+R VG+ + G+ + L R+ L E Sbjct: 177 YFGESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLNDFTREYKKNLVEAE 236 Query: 238 GLYFDSVEY 246 GLY + + Y Sbjct: 237 GLYLNKINY 245 >gi|289641136|ref|ZP_06473304.1| tRNA pseudouridine synthase A [Frankia symbiont of Datisca glomerata] gi|289509077|gb|EFD30008.1| tRNA pseudouridine synthase A [Frankia symbiont of Datisca glomerata] Length = 279 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 114/245 (46%), Gaps = 9/245 (3%) Query: 9 EYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLV 67 Y+G+ + GW RQ ++QG +E A+ V V + AGRTD+GVHA QVAH D+ Sbjct: 15 AYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDAGVHARGQVAHVDIP 74 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALE 126 + L + LN L + I L+ F ARFSA+ R Y+YRI L Sbjct: 75 DDVPLGGLARRLNGVL--DRAVRITALAPAPPGFDARFSALSRRYVYRIGDAPYGVDPLR 132 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN---- 182 + P+ LD E M AA LVG DF F + ++ +RT+ DV + Sbjct: 133 RHDTLAWPRPLDAERMADAALALVGERDFAAFCRRR-EGATTVRTLLRLDVARVPDGHDG 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ V A +F H+ +R+ VG+L VG+G+ L R +A P GL Sbjct: 192 VVVADVEADAFCHSMVRALVGALLAVGEGRRPHHWPADVLARGVRDPAVTVAAPHGLTLV 251 Query: 243 SVEYS 247 V Y Sbjct: 252 EVRYP 256 >gi|172040043|ref|YP_001799757.1| tRNA pseudouridine synthase A [Corynebacterium urealyticum DSM 7109] gi|171851347|emb|CAQ04323.1| tRNA pseudouridine synthase A [Corynebacterium urealyticum DSM 7109] Length = 324 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 125/260 (48%), Gaps = 17/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R M + Y+G+ + GW QK G ++QG +E+ + LV V + AGRTD+GVHA Q Sbjct: 50 VRVRMDVSYDGTDFHGWAAQKGGLRTVQGVLEEKLTLVCRTPVELTVAGRTDAGVHADGQ 109 Query: 61 VAHFDLV-------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H D+ P L + L+ L + I + + F ARFSA+RR Y+ Sbjct: 110 VCHADIPAEAFTHRSLARPEDLVRRLSRML--PEDIRLNAAVAAPEGFDARFSALRRHYV 167 Query: 114 YRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T PL + +D E ++IAA LVG ++F + + ++ IR + Sbjct: 168 YRVCTAPGGPLPRRVRDTARWRRPVDLEKVQIAADALVGLNNFAAYCKAR-EGATTIREL 226 Query: 173 DHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F + E VVA +F + +RS VG+ VG+GK + L+ +R Sbjct: 227 QEFTWKDVSTPAEPQTYEAHVVADAFCWSMVRSIVGACLTVGEGKRPEGFTAELLELDER 286 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P+AP EGL V+Y Sbjct: 287 SSQVPVAPAEGLNLVGVDYP 306 >gi|302336349|ref|YP_003801556.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084] gi|301320189|gb|ADK68676.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084] Length = 284 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 115/255 (45%), Gaps = 13/255 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G+G+ G+ Q ++ G + A+ + V + AGRTD+GV+AL Q Sbjct: 22 VRLGYRGAGFAGFAEQPGQRTVAGELRTALETLLHRPVDLTCAGRTDAGVNALAQYVSLP 81 Query: 66 LVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + R + + +++ + + D +S+ L D F ARF A+ R Y YR+ A Sbjct: 82 VTRGELEREGRRLVSSLVALTPDDLSVRGLYKADVSFSARFDALERGYRYRVACGSARPV 141 Query: 125 LEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHC------QASSPIRTIDHFD 176 L G W + LD + M AA L+G HDF +F S R + Sbjct: 142 LSWGHTWWLRSVADLDVDAMGEAASALLGEHDFRSFCKASSAGLLEADGRSTCRRLSAVS 201 Query: 177 VNS----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V L+ I V +FLH +R G+L VG G ++ + +AL A DR GP Sbjct: 202 VVRAREAGEELVAIDVRGNAFLHNMVRVIAGTLVEVGRGHRDASWVARALAAHDRSAAGP 261 Query: 233 LAPPEGLYFDSVEYS 247 AP GL F+ V Y Sbjct: 262 TAPAHGLTFEWVGYP 276 >gi|42559717|sp|P60349|TRUA_CORDI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 288 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ + ++Q IE + LV + + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWARQGDSDLRTVQKIIEDTLTLVLQRPIDLTVAGRTDAGVHATG 65 Query: 60 QVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ P L + L + D + I N+S V +F ARFSA+RR Sbjct: 66 QVAHFDVDPAALETRSIAGDPARLIRRLARLM--PDDVRIHNMSFVPAEFDARFSALRRH 123 Query: 112 YLYRIITRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YR+ T + R P+S+D M+ AA L+G HDF F + +S IR Sbjct: 124 YVYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYR-EGASTIR 182 Query: 171 TIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + L E V A +F + +RS VG+ +VG+GK E L Sbjct: 183 DLQEFTWHDVSTPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEGKRADGFTEHLLGET 242 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R P+A GL V+Y Sbjct: 243 KRSSSIPVAAACGLSLVGVDYP 264 >gi|38233160|ref|NP_938927.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae NCTC 13129] gi|38199419|emb|CAE49063.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae] Length = 295 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 125/262 (47%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ + ++Q IE + LV + + AGRTD+GVHA Sbjct: 13 VRIRLDLAYDGTDFHGWARQGDSDLRTVQKIIEDTLTLVLQRPIDLTVAGRTDAGVHATG 72 Query: 60 QVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ P L + L + D + I N+S V +F ARFSA+RR Sbjct: 73 QVAHFDVDPAALETRSIAGDPARLIRRLARLM--PDDVRIHNMSFVPAEFDARFSALRRH 130 Query: 112 YLYRIITRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YR+ T + R P+S+D M+ AA L+G HDF F + +S IR Sbjct: 131 YVYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYR-EGASTIR 189 Query: 171 TIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F + L E V A +F + +RS VG+ +VG+GK E L Sbjct: 190 DLQEFTWHDVSTPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEGKRADGFTEHLLGET 249 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R P+A GL V+Y Sbjct: 250 KRSSSIPVAAACGLSLVGVDYP 271 >gi|327401434|ref|YP_004342273.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6] gi|327316942|gb|AEA47558.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6] Length = 290 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 23/248 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 +R + + Y G+ + G+Q Q + +++G + KA + + AGRTD+GVHA Sbjct: 25 MRVALKLAYIGTDFAGFQYQPDERTVEGELFKAFESLGINVKASNYKCAGRTDAGVHAFS 84 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV D+ +L + +NA L D I + + V F+ R+ A R+Y+Y + +R Sbjct: 85 QVVALDVSD--AKKVLPRVINANL--PDDIVVWAWAKVPDDFNPRY-ATSRTYIYVLYSR 139 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + D MR AA+ L+G HDFT F + S +RTI + ++ Sbjct: 140 EY----------------DISAMRKAAKLLLGTHDFTNFTKKFGEGQSCVRTIYNVELRV 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + +F +R + +L+ VG + E+ L + +E AP GL Sbjct: 184 NGDFLIFEIEGNAFTWNMVRCIIAALEAVGSRHRSVEWFEEMLNPEKHRERIEPAPAYGL 243 Query: 240 YFDSVEYS 247 ++YS Sbjct: 244 ILKDIKYS 251 >gi|302524024|ref|ZP_07276366.1| tRNA pseudouridine synthase A [Streptomyces sp. AA4] gi|302432919|gb|EFL04735.1| tRNA pseudouridine synthase A [Streptomyces sp. AA4] Length = 298 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 23/265 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-VTGEIV--VVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ ++Q +E+A+ GE V V AGRTD+GVHA Sbjct: 17 VRLRLDVSYDGTDFSGWARQPGRRTVQAELEQALQRQPPGEAVPKSVVVAGRTDAGVHAT 76 Query: 59 RQVAHFDL--------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 QV H D+ R + + L + + +LN + F AR Sbjct: 77 GQVVHVDVVPFAPGAPGRIPVDERGIPDLTRMRGRWNKL-LPADVRVLNARVAPDGFDAR 135 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSAIRR Y YR+ L + + L E M AA L+G DF + Sbjct: 136 FSAIRRHYRYRVSDAPWGVDPLRRNDTLAWGRPLSTERMNAAAAELLGLQDFAAYCKQR- 194 Query: 164 QASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + IR + + L+E+RV A +F H+ +RS VG L LVGDG+ + + L Sbjct: 195 EGGTTIRELQRLEWTRIDEHLLEVRVSADAFCHSMVRSLVGVLLLVGDGRRGTGWPGEVL 254 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 + R +AP GL +V+Y Sbjct: 255 ASGTRDSA--VAPAHGLTLTAVDYP 277 >gi|262066902|ref|ZP_06026514.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum ATCC 33693] gi|291379371|gb|EFE86889.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum ATCC 33693] Length = 248 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 117/250 (46%), Gaps = 7/250 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 3 MGRKNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKILKIVTKEDINLISAGRTDRGVHAN 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L I IL++ V++ F+AR A R Y+Y I Sbjct: 63 HQVSNFYTSSSIPVGKYKYLLTRAL--PKDIDILSVEEVNEDFNARHDAKMREYVYIISW 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + +D E + +G HDF FR C + +R I DV Sbjct: 121 DKNP--FETRYCKFVKDKIDAEKLERIFSSFLGVHDFKNFRLSDCVSKVTVREIYSIDVK 178 Query: 179 SF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 F N ++I + +FL +Q+R VG+ V + +E L ++ L E Sbjct: 179 YFSENKLKIFIRGSAFLKSQVRIMVGTALEVYYKNLSENHIELMLNNFSKEYKKYLVEAE 238 Query: 238 GLYFDSVEYS 247 GLY + + YS Sbjct: 239 GLYLNKINYS 248 >gi|308809101|ref|XP_003081860.1| COG0101: Pseudouridylate synthase (ISS) [Ostreococcus tauri] gi|116060327|emb|CAL55663.1| COG0101: Pseudouridylate synthase (ISS) [Ostreococcus tauri] Length = 338 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 141/300 (47%), Gaps = 55/300 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGV 55 RY +EY+G+ + G+QRQ + +++Q ++++A+ TG V G+ RTD GV Sbjct: 12 PRYLAFLEYDGAKFRGFQRQNLGERATTTVQDALDEALETFTGNRGAVASVGSSRTDVGV 71 Query: 56 HALRQVAHFDLVRE--------WVPVILCKALNAYLKISD-TISILNLSIVD---KQFHA 103 HA R AHFD R + + + LN +LK + + + VD FHA Sbjct: 72 HATRNSAHFDCGRVGKDGSMDAYDSESVRRGLNYHLKSRERAMRVTECVRVDTLNPTFHA 131 Query: 104 RFSAIRRSYLYRIITRQAPL---ALEKGRAWLIPK----------------------SLD 138 R A+ R Y Y I+ ++ AW + LD Sbjct: 132 RHDAVSRRYRYEILVGDRDDGGSVFDRDGAWYLRAVVASDRGAKQTSSRRYTTCEATGLD 191 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF------------GNLIEI 186 + MR AA L+G+HDF++FR+ CQA SPIRTI DV S + + Sbjct: 192 VDAMRRAASVLIGKHDFSSFRASGCQAKSPIRTITSLDVVSRTTEWPSPEARGTRQEVSV 251 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 RV A SFL+ Q+R VG+LK VG G T D+ + L+A+D + +AP GLY V Y Sbjct: 252 RVEAPSFLYHQVRLLVGALKSVGAGDLTVDDVRELLEAKDVSQAPQMAPAHGLYLMDVGY 311 >gi|313816522|gb|EFS54236.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL059PA1] Length = 279 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ++ V F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLT--PDVVVKSVRPVPSTFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + + LD + + A L+G DF F H + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAFCK-HREGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ + L+ + R + Sbjct: 178 KRLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLPLEEVGYP 250 >gi|305664970|ref|YP_003861257.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] gi|88707800|gb|EAR00040.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] Length = 224 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 4/220 (1%) Query: 28 QGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD 87 Q +E AI + + V GAGRTD+GVHA AHFD L +NA+L Sbjct: 2 QEVLENAISKLLRSPISVVGAGRTDAGVHAREMFAHFDFKDSIDSKDLVYRMNAFL--PA 59 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 I++ + +V+ + HARF A R+Y Y I ++ P ++ A + +LD + M AA Sbjct: 60 DIAVSQIYLVNGEAHARFDATERTYEYWITQKKNPFYFDR--AHFVKNTLDVKAMNDAAN 117 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 +GR DF F + + + + + + +VA FL +R+ VG+L Sbjct: 118 LFLGRKDFECFSKSNTDVHTYLCDVRKTIWTEEEDKLVFTIVADRFLRNMVRAVVGTLID 177 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VG GK + D+++ L+++DR + G P +GLY +EY Sbjct: 178 VGTGKTSLADIQRILESKDRTKAGASVPAKGLYLTKIEYP 217 >gi|149916968|ref|ZP_01905469.1| tRNA pseudouridine synthase A [Plesiocystis pacifica SIR-1] gi|149822246|gb|EDM81637.1| tRNA pseudouridine synthase A [Plesiocystis pacifica SIR-1] Length = 285 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 30/271 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y+G+ + G+ RQ NG +IQG +E+A+ + + + GA RTD+GVHA Q Sbjct: 4 LLRVAYDGTDFHGFARQDNGGQPLRTIQGCLEQALSTLYKQPIRTRGASRTDAGVHARGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDK----QFHARFSAIRRSYLYRI 116 + FD L + I + + + RF + Y YR+ Sbjct: 64 LVAFDPPFAIPARGLLLG--LAANLPADIIASAAWLAEDVEGEPLNPRFHTRGKLYRYRL 121 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L W +P+ +D M+ AA G HDF FR+ CQA S R + Sbjct: 122 RPVSLRDPLSARYEWHLPRPIDVAAMQAAAPRFAGTHDFAGFRASDCQAKSTTRRVRSVI 181 Query: 177 VN------------SFGNL--------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 VN G + + I V +FL +R VG+L VG G++ + Sbjct: 182 VNVETLAELDPLAGQRGRIEGPAAPARVTIDVRGDAFLKNMVRIMVGTLVGVGRGQFGAE 241 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +++ L + DR G AP GL V + Sbjct: 242 RIDEVLASGDRTRAGVTAPACGLTLVEVLWP 272 >gi|323357344|ref|YP_004223740.1| pseudouridylate synthase [Microbacterium testaceum StLB037] gi|323273715|dbj|BAJ73860.1| pseudouridylate synthase [Microbacterium testaceum StLB037] Length = 285 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 121/263 (46%), Gaps = 18/263 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ ++QG +E+A+ + G + AGRTD+GVHA QV Sbjct: 1 MRLRLDISYDGTHFRGWARQPGLRTVQGVLEEALARILGGDPRLVVAGRTDAGVHASGQV 60 Query: 62 AHFDLVREWVP---------------VILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 AH DL L + L +++ S + F ARFS Sbjct: 61 AHLDLDDAQQARLPRRRREGDEGDAVAALAGRVRGVLGAYPDVTVHRSSCAPEGFDARFS 120 Query: 107 AIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI QA LE+ R + SLD + M AAQ L+G HDF + +A Sbjct: 121 AVWRRYSYRIADAQAGYEPLERLRTTSVRASLDVDAMHAAAQRLIGLHDFAAYCKAREEA 180 Query: 166 SSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + IRT+ +D + I I V A +F H+ +R+ VG+ VG+G+ D+ K Sbjct: 181 -TTIRTLLEYDWRRGDDGILIANVRADAFCHSMVRALVGACVAVGEGRLEVDDVIKIRDE 239 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 R + GL V Y Sbjct: 240 GRRTADSKVLAARGLVLAEVGYP 262 >gi|19704921|ref|NP_602416.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|42559836|sp|Q8R601|TRUA_FUSNN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19712818|gb|AAL93715.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 247 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 3 MRRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHAN 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 63 HQVSNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYIYIISW 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + + E + +G HDF FR C + +R I +V Sbjct: 121 EKNP--FEARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVK 178 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG N I+I + +FL +Q+R VG+ + G+ + L ++ L E Sbjct: 179 YFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAE 238 Query: 238 GLYFDSVEY 246 GLY + +EY Sbjct: 239 GLYLNKIEY 247 >gi|14591061|ref|NP_143136.1| tRNA pseudouridine synthase A [Pyrococcus horikoshii OT3] gi|3915167|sp|O58941|TRUA_PYRHO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3257659|dbj|BAA30342.1| 262aa long hypothetical pseudouridylate synthase [Pyrococcus horikoshii OT3] Length = 262 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 24/246 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I Y+G+ + G+QRQ N +++G I KA+ + A RTD GV AL V Sbjct: 1 MKVALKIAYDGTKFHGFQRQPNVRTVEGEIIKALNNSGIMFNELKSASRTDKGVSALGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 E + + LNA L + +L+ V FH RF A + Y Y + + Sbjct: 61 VAITTEDERITNPMI--LNAKL---KDVWVLSAVKVPSDFHPRFWARSKVYRYYLPS--- 112 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 LD E ++ ++ +G HDF+ F + +R+ID +V G Sbjct: 113 -------------FDLDVEKVKECSKLFLGVHDFSAFSRV--DGRETVRSIDRIEVLDLG 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLY 240 ++ I V A+SFL +R V +L+L G GK +S ++ K L+ + ++ P AP EGL Sbjct: 158 PVLAIEVEAKSFLWEMVRRIVKTLELCGLGKLSSEEVRKMLRGKFEKSRKVPPAPAEGLL 217 Query: 241 FDSVEY 246 V+Y Sbjct: 218 LVEVKY 223 >gi|269955466|ref|YP_003325255.1| tRNA pseudouridine synthase A [Xylanimonas cellulosilytica DSM 15894] gi|269304147|gb|ACZ29697.1| tRNA pseudouridine synthase A [Xylanimonas cellulosilytica DSM 15894] Length = 293 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 22/268 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHGAGRTDSG 54 M+R + + Y+G+ + GW RQ ++QG +E + + + AGRTD+G Sbjct: 1 MVRVRLDLAYDGTQFAGWARQPALRTVQGVLEDGLEQIVRTAPRGLPAPRLTVAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWV-------PVILCKALNAYLK--ISDTISILNLSIVDKQFHARF 105 VHA QVAH DL E ++L L + + + ++ F ARF Sbjct: 61 VHARGQVAHVDLPVERWVALPGRSDREPGESLVTRLTGVLPPDVVVHRAALAPAGFDARF 120 Query: 106 SAIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R Y +RI A L + + LD M A Q L G DF + Sbjct: 121 SALYRRYAFRIADDAAARDPLHRAHVLWHRRPLDVAAMHDAVQPLRGVRDFAAYCKPRP- 179 Query: 165 ASSPIRTIDHFDVNSFGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 ++ IR + + L+ RVVA +F H +R+ VG+ VG+G+ + Sbjct: 180 GATTIRELKELSWTRPADGPDAGLVVARVVADAFCHNMVRALVGASIAVGEGRKPVSWPA 239 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L ++ R+ + PP GL + V Y Sbjct: 240 EVLASKQRERAAAVVPPRGLTLEEVVYP 267 >gi|332665403|ref|YP_004448191.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] gi|332334217|gb|AEE51318.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] Length = 249 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG+ YFGWQRQ S+Q ++E +I + G + + G GRTD+GVHA + Sbjct: 1 MQRYFIELAYNGTQYFGWQRQPGKISVQQTLEDSINTILGTELEITGCGRTDTGVHARQY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E+ P + LN +L I++ + V+ + HARF A RSY Y + R+ Sbjct: 61 FAHFDFEGEF-PAEFVRRLNKFL--PKDIAVYQIIAVEPEAHARFDAYERSYEYHLSFRK 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + D M+ AA L+ +F F + A + + + + Sbjct: 118 NPFTEHLAYFYPYVQQPDPVLMQDAAAFLLQYQEFEPFCKSNHDAKTMVCKLTRSEWIFD 177 Query: 181 --GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + FL +R VG VG G+ + +L+ A++ Q R + APPEG Sbjct: 178 LKEQRAVFHITSNRFLRGMVRLIVGMCIGVGTGQISMEELKTAMEQQSRLKKATSAPPEG 237 Query: 239 LYFDSVEY 246 LY ++Y Sbjct: 238 LYLGGIKY 245 >gi|256825854|ref|YP_003149814.1| pseudouridylate synthase I [Kytococcus sedentarius DSM 20547] gi|256689247|gb|ACV07049.1| pseudouridylate synthase I [Kytococcus sedentarius DSM 20547] Length = 297 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 72/259 (27%), Positives = 117/259 (45%), Gaps = 13/259 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M R + Y+G + GW Q ++Q ++E+ + V + V + AGRTD+GVHA Sbjct: 20 MPRLRLDFAYDGRDFHGWATQPGLRTVQETLERGLATVLRAQDVSLTVAGRTDAGVHATG 79 Query: 60 QVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRR 110 V H D+ +AL L + + + + V F ARFSA+RR Sbjct: 80 AVCHLDVAHAAWAAVPGRSDRAPAEALVTRLAGVLPADLVVHRATEVPDAFDARFSALRR 139 Query: 111 SYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y Y + R+ +G K LD E M AAQ LVG DF F + ++ + Sbjct: 140 HYRYLLCDRRETLDPRRRGMVVAWRKPLDAEAMHAAAQQLVGLGDFAAFCKPR-EGATTV 198 Query: 170 RTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 RT++ F + + V A +F H+ +R+ VG++ VG+G+ + + ++R Sbjct: 199 RTLERFTWHRDEQGWVVGEVSADAFCHSMVRALVGAVVPVGEGRQPVDWPRQVQEGRERL 258 Query: 229 ECGPLAPPEGLYFDSVEYS 247 + P GL +V+Y Sbjct: 259 GAVQVMPAHGLTLVAVDYP 277 >gi|284042832|ref|YP_003393172.1| tRNA pseudouridine synthase A [Conexibacter woesei DSM 14684] gi|283947053|gb|ADB49797.1| tRNA pseudouridine synthase A [Conexibacter woesei DSM 14684] Length = 261 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 8/244 (3%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAH 63 + +EY+G + GW RQ +++ ++E+A+ V V + AGRTD+GVHA Q A Sbjct: 9 RLTLEYDGRDFAGWARQPGRRTVEDALERALATVLRRDAVGLTVAGRTDAGVHAWAQEA- 67 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 P LNA L D +++++ F AR A R+Y YR++ R++ Sbjct: 68 ----SYEGPPAAPHRLNALL--PDDVAVIDARPAPPGFSARHDATSRAYRYRVLVRRSRS 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A E+GRA P LD + + A L G HDFT F R + H + G++ Sbjct: 122 AHERGRALWWPHRLDRDALDACAAALAGTHDFTAFTPTETDHVRFQREVMHASWRADGDM 181 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 ++ + A +F+ R VG++ V + + L R G APP GLY Sbjct: 182 LQFSIEADAFMRNMNRVLVGTMLEVAGERRSVEQFTALLDGAPRDRAGVTAPPHGLYLAG 241 Query: 244 VEYS 247 V Y Sbjct: 242 VGYD 245 >gi|302342258|ref|YP_003806787.1| tRNA pseudouridine synthase A [Desulfarculus baarsii DSM 2075] gi|301638871|gb|ADK84193.1| tRNA pseudouridine synthase A [Desulfarculus baarsii DSM 2075] Length = 279 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 YNG+G+ GWQ Q G +IQG +E+ + + G V + AGRTD+GVHA QVA F Sbjct: 43 YNGAGFAGWQIQARGRTIQGQVERELSRLCGHAVRLWAAGRTDAGVHAFGQVASFQTDSR 102 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 + +AL A L I + L + FHARF A ++Y Y + + P G Sbjct: 103 LEEGRMAQALAAML--PPDIWLRRLGRAPEGFHARFDAAGKTYEYYLWPKARPGVFLDGL 160 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS-FGNLIEIR 187 W + LD E M A L+G D F + + P +R I V G +I +R Sbjct: 161 CWPLACDLDMEAMARGAAFLLGEVDLAAFAAHSSEVEGPTVRRISEATVTPAEGGMILVR 220 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + FL +R+ VG+L +G + + + L A R GP APP GLY + Y Sbjct: 221 LSGSGFLRHVVRNVVGTLTQIGQHRLEPEAVGRMLAAGRRIYPGPKAPPGGLYLGQIYY 279 >gi|237739188|ref|ZP_04569669.1| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31] gi|229423788|gb|EEO38835.1| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31] Length = 246 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 117/250 (46%), Gaps = 7/250 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MERKNIKIEFRYDGSRYYGFQRQPNKETVQGEIEKILKIVTKEDINLISAGRTDRGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L I IL++ VD++F+AR A R Y+Y I Sbjct: 61 HQVSNFYTSSTIPVEKYKYLLTRAL--PKDIDILSVEEVDEKFNARHDAKMREYVYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + +D E + +G HDF FR C + +R I DV Sbjct: 119 EKNP--FEARYCKFVKDKIDAERLEKIFSSFLGIHDFRNFRLSDCMSKVTVREIYSIDVK 176 Query: 179 SF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 F N ++I + +FL +Q+R VG+ V ++ L ++ L E Sbjct: 177 YFSENKLKICIRGSAFLKSQVRIMVGTALEVYYKNLPKNHIDLMLNDFSKEYKKSLVEAE 236 Query: 238 GLYFDSVEYS 247 GLY + + YS Sbjct: 237 GLYLNRINYS 246 >gi|269796221|ref|YP_003315676.1| pseudouridylate synthase I [Sanguibacter keddieii DSM 10542] gi|269098406|gb|ACZ22842.1| pseudouridylate synthase I [Sanguibacter keddieii DSM 10542] Length = 287 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 113/260 (43%), Gaps = 16/260 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y G+ + GW Q ++QG++E+ + V + AGRTD+GVH+ QV Sbjct: 6 RIRLDVSYRGTDFAGWAVQPGLRTVQGTLEEGLARVLRADTRLTVAGRTDAGVHSRGQVT 65 Query: 63 HFDLVREWVPVILCKALNAYLK---------ISDTISILNLSIVDKQFHARFSAIRRSYL 113 H D+ RE + + + + + + +S+ F ARFSA+ R Y Sbjct: 66 HLDVPREVWDTVSGRGHRTGEQALLSRMTGVLPTDVVVRAVSVAPPGFDARFSALSRRYR 125 Query: 114 YRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YRI+ R A L + LD + M+ A Q LVG DF F ++ IR + Sbjct: 126 YRIVDRHALRDPLRADWVLWSKRPLDVDAMQAAVQPLVGVRDFKAFCRPRP-GATTIRHL 184 Query: 173 DHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 L+ V + +F H +R+ VG+ VG G+ + L+ +R Sbjct: 185 QELTWERVDGGPDDGLVVASVRSDAFCHNMVRALVGASMAVGHGQRPVGWPAEVLRRGER 244 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + PP GL + VEY Sbjct: 245 DPLAGVVPPHGLTLEEVEYP 264 >gi|262039471|ref|ZP_06012775.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264] gi|261746538|gb|EEY34073.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264] Length = 249 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 M+ +Y+GS ++G+QRQKN ++QG IEK I + + + +GRTD GVHAL QV+ Sbjct: 6 NIKMVYQYDGSKFYGFQRQKNKKTVQGEIEKVILKNFSQKINMISSGRTDKGVHALGQVS 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + + + + +N L I IL++ + ++F++RF A R+YLY + + Sbjct: 66 NFFIDEKIPLEAIKRQINKNLY--GEIKILSVEEIKREFNSRFDAKSRTYLYIMKKEEEI 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--NSF 180 E I ++ E + + G++DF++F + +R I + Sbjct: 124 TPFESNYITGIKNDINIEQFQKIMEIFKGKYDFSSFMKKDKAIRNTMREIYNIKCEYEER 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + SFL T IR +GS + GK ++ L+ D + LAP EGLY Sbjct: 184 EKKIYVEICGSSFLKTMIRIMIGSAMAIYFGKEREDYIKMRLENPDADKPKILAPSEGLY 243 Query: 241 FDSVEY 246 V+Y Sbjct: 244 LYRVDY 249 >gi|296329175|ref|ZP_06871676.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153531|gb|EFG94348.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 247 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 3 MGRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHAN 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 63 HQVSNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYIYIISW 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + + E + +G HDF FR C + +R I +V Sbjct: 121 EKNP--FEARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVK 178 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG N I+I + +FL +Q+R VG+ + G+ + L ++ L E Sbjct: 179 YFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAE 238 Query: 238 GLYFDSVEY 246 GLY + +EY Sbjct: 239 GLYLNKIEY 247 >gi|309812385|ref|ZP_07706140.1| tRNA pseudouridine synthase A [Dermacoccus sp. Ellin185] gi|308433690|gb|EFP57567.1| tRNA pseudouridine synthase A [Dermacoccus sp. Ellin185] Length = 282 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 17/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 +R+ + Y+G+ + GW RQ +++ + A+ V E V + AGRTD+GVHA Sbjct: 1 MRFRIDFAYDGTDFSGWARQPGRRTVEEELTGALTRVLRREDVRLTVAGRTDAGVHARGG 60 Query: 61 VAHFDLV-----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 V H D+ L LN L + + S F ARFSA++ Sbjct: 61 VCHGDIDADAWAALPGRSERAPAQALVTRLNGVLA--GDVVVKAASEQPASFDARFSALK 118 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR++ A L + ++ ++LD + M A+ L+G HDF + + ++ Sbjct: 119 RRYSYRLLDDAARLDPLRRRDTVVVKRTLDVDAMNAASALLIGLHDFAAYCKPR-EGATT 177 Query: 169 IRTIDHFDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IRT+ + + + R+ A +F H+ +R+ +G + VG+G+ + L A R Sbjct: 178 IRTLLDYAWTREADGVLTARLEADAFCHSMVRALIGGVVPVGEGRRPIDWPAQVLTAGRR 237 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + PP GL + V Y Sbjct: 238 DPGVVVMPPHGLCLEEVSYP 257 >gi|182415339|ref|YP_001820405.1| tRNA pseudouridine synthase A [Opitutus terrae PB90-1] gi|177842553|gb|ACB76805.1| tRNA pseudouridine synthase A [Opitutus terrae PB90-1] Length = 268 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 127/246 (51%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + Y+G + GWQ Q +G+S+Q +IE + + G V +HG+GRTD+GVHAL QV Sbjct: 9 PRWKCVCAYDGGHFAGWQSQVSGASVQDAIEARLREMFGREVRIHGSGRTDAGVHALGQV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P L AL A L I I + V +FHARF A + Y YR+ A Sbjct: 69 FHFDAHWRHGPEKLLAALRARL--PSAIQIKTVCAVTPEFHARFQASGKRYTYRLHLGDA 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSF 180 + +W + + LD M AA L GRHDF F +++ A +R + DV Sbjct: 127 -DPFTRPYSWPVFRPLDLAAMNAAAAVLRGRHDFRAFTALNGPARVDTVRDLRRLDVRRR 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I I A FL+ +RS VG L VG+GK T D+ L ++ R APP+GL+ Sbjct: 186 GRVIRIIAEADGFLYKMVRSLVGVLVAVGEGKLTVHDVRAILASRQRTAVVQTAPPQGLF 245 Query: 241 FDSVEY 246 V Y Sbjct: 246 LVRVFY 251 >gi|310777852|ref|YP_003966185.1| tRNA pseudouridine synthase A [Ilyobacter polytropus DSM 2926] gi|309747175|gb|ADO81837.1| tRNA pseudouridine synthase A [Ilyobacter polytropus DSM 2926] Length = 243 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + EY+GSG+FG+QRQ + ++QG IE A+ +V E + + +GRTD GVHA Q Sbjct: 1 MKNIKIEYEYDGSGFFGFQRQPSARTVQGEIESALKVVLKEEINLASSGRTDRGVHAYMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F + L A+ I + I I ++ V ++FHARFSA R+Y Y + Sbjct: 61 VSNFFTSSKIPLDRLEFAV--KNLIPEDIKIHSMKNVSEEFHARFSAKSRAYEYIM--GW 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A E I +D E + + +VGRH+F FR C +P+R I Sbjct: 117 DRTAFETKYVSGIKGKVDPEKLYKILEPIVGRHNFEGFRLTDCSGKNPVRDISEIRCYPK 176 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G N + + + +FL +QIR +G+ V K L L+ D K+ +A GL Sbjct: 177 GENKLAVYIKGNAFLKSQIRIIMGTALAVYFEKRPKNYLINKLKNPDSKDEKIVADGSGL 236 Query: 240 YFDSVEY 246 Y +EY Sbjct: 237 YLCDIEY 243 >gi|195953438|ref|YP_002121728.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. Y04AAS1] gi|229470758|sp|B4U9D9|TRUA_HYDS0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|195933050|gb|ACG57750.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. Y04AAS1] Length = 247 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 11/252 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHGAGRTDSG 54 M Y I + G+ Y GWQ Q N +IQ +E+ ++ + + + G RTD G Sbjct: 1 MKNYKFTISFVGTNYSGWQYQPNVPTIQNEVEEKLYYIVNKKKPIKQKIRAIGCSRTDKG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA+ V + + + L KALN+ L I I N+ V +F++RF A++++Y+Y Sbjct: 61 VHAIEFVFNVKMEFDKDLNFLRKALNSAL--PKDIKIHNIEEVPLEFNSRFDALKKTYIY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 ++ + + RA L+ K D M + +G DF F + + ++++ Sbjct: 119 KLFFDEKNSPFFQDRAMLVYKPTDLGKMMEISHLFLGYKDFRGFTK-ELEDENGYCSVEN 177 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 L+EI + A FL +R VG++ G + D+ L+A+ + A Sbjct: 178 ITFKVDYPLVEISITANRFLRYMVRRMVGTMLSYAQGLISIDDVNDFLKAK--RVSNHTA 235 Query: 235 PPEGLYFDSVEY 246 GLY V Y Sbjct: 236 KAHGLYLKKVYY 247 >gi|147865780|emb|CAN81146.1| hypothetical protein VITISV_020811 [Vitis vinifera] Length = 403 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 119/254 (46%), Gaps = 24/254 (9%) Query: 16 FGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDLVREWV- 71 GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA QVAHF + Sbjct: 123 RGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWGQVAHFLTPFNYDG 182 Query: 72 PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + ALN L I + +S +FHARFS + Y Y+I + + Sbjct: 183 LESIHAALNGLL--PPDIRVREISPAVPEFHARFSXKSKIYHYKIYNDAVMDPFLRHYVY 240 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNS---------- 179 L+ MR AA+H G+HDF+ F + + ++ +P++ I FDVN Sbjct: 241 HSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFDVNEMMFLELIVNC 300 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---L 233 G L+++ V FL+ Q+R+ V L +G + L +DRKE Sbjct: 301 IIAQGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALS 360 Query: 234 APPEGLYFDSVEYS 247 APP GL SV+Y+ Sbjct: 361 APPHGLCLMSVKYN 374 >gi|189500072|ref|YP_001959542.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides BS1] gi|189495513|gb|ACE04061.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides BS1] Length = 233 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 116/242 (47%), Gaps = 10/242 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M IEY+G+ + GWQ+Q G ++QG +E + + E VV+ AGRTD GVHA QVA+F Sbjct: 1 MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSRIVQEEVVMTAAGRTDRGVHARGQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L +LNA L T+ I ++ V FHAR+SA+ R Y Y + + P A Sbjct: 61 RTASCLSTGRLLHSLNALL--PSTVCIRDMQEVPDSFHARYSALFREYRYFFL--EKPSA 116 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L K A + LD + + A LVGRHDF+ + Q S T+ + Sbjct: 117 LGKRYAGVYGGRLDVDRLNRCAGELVGRHDFSAYAKEDAQNGSTFCTVFGASWGRQDEKV 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A FL T +R V + G G+ T + L+ + + A P GL+ V Sbjct: 177 VFRIAANRFLRTMVRFLVSAQLEAGPGELT-----ERLRRGNVLKNIVPADPAGLFLWKV 231 Query: 245 EY 246 Y Sbjct: 232 LY 233 >gi|311115139|ref|YP_003986360.1| tRNA-pseudouridine synthase I [Gardnerella vaginalis ATCC 14019] gi|310946633|gb|ADP39337.1| tRNA-pseudouridine synthase I [Gardnerella vaginalis ATCC 14019] Length = 310 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 131/290 (45%), Gaps = 46/290 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------IVVVHGAGRTDSG 54 +R + + Y+G ++GW RQ N ++QG++E A++ V + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGDFYGWARQPNLRTVQGTLEDALYKVLRVHDGDSCFPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREW-------VPVILCKALNAYLK--ISDTISILNLSIVDKQFHARF 105 VHA QV H D+ + + KAL L+ + ISI ++SI F ARF Sbjct: 61 VHASYQVCHLDVEDDILQNCVGHTNLTPVKALEYRLRGVLPKDISIHSVSIAPSGFDARF 120 Query: 106 SAIRRSYLYRII---TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 SA+ R+Y+YRI R+ +G I LD +M AAQ +VG HDF +F + Sbjct: 121 SALDRTYVYRISDAANRENLDPRMRGFVLQIDYDLDVNSMNQAAQMIVGLHDFGSFARPN 180 Query: 163 CQASSPIRTIDHFDVNS------------------------FGNLIEIRVVARSFLHTQI 198 + IR + N LIE +VA +F H + Sbjct: 181 P-GGTTIRCVKKAVWNRVCLDGCAPVGSSIASRSTGNIPPIEHGLIEFTIVADAFAHNMV 239 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 RS V + VG GK + + ++ R+ GP+A GL + VEY Sbjct: 240 RSLVQACVQVGCGKRSVDWFKDKIENPIREGSTGPIA-SNGLTLEYVEYP 288 >gi|220913398|ref|YP_002488707.1| tRNA pseudouridine synthase A [Arthrobacter chlorophenolicus A6] gi|219860276|gb|ACL40618.1| tRNA pseudouridine synthase A [Arthrobacter chlorophenolicus A6] Length = 297 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 118/263 (44%), Gaps = 19/263 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G + GW Q ++QG++E+A+ L+ + V AGRTD+GVHA QV Sbjct: 18 RIRLDLSYDGGPFSGWAVQPGRRTVQGTLEEALELLVRRPLRVTVAGRTDAGVHARGQVV 77 Query: 63 HFDL---------------VREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFS 106 H DL + L ALN L ++ + + ++ F ARFS Sbjct: 78 HLDLAESEWLGMARGHELDPATAMTRRLRGALNRVLGDLTGAVQVRGIAPAPDGFDARFS 137 Query: 107 AIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI A LE+ LD E + A L+G +F +F + Sbjct: 138 ALWRRYSYRIADGPALWDPLERAFTLWHKNPLDVELLNQGAARLLGLQNFLSFCKPR-EG 196 Query: 166 SSPIRTIDHFDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + F+ + I V A +F H +R+ +GS VG+G L + L A Sbjct: 197 ATTIRELQRFEFARAEDGAIVATVQADAFCHNMVRALIGSALYVGEGTVEPGWLYERLLA 256 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 Q R LA P L F+ V Y Sbjct: 257 QKRDAKSVLAAPHPLVFEEVAYP 279 >gi|161723265|ref|NP_302320.2| tRNA pseudouridine synthase A [Mycobacterium leprae TN] Length = 320 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 75/259 (28%), Positives = 118/259 (45%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A V V + AGRTD+GVHA QV Sbjct: 44 VRLRLDIAYDGTDFAGWAVQAGQRTVAGVLDEAFTTVFRTPVRLRAAGRTDTGVHATGQV 103 Query: 62 AHFDLV------------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ P L + + +L+++ F ARFSA+R Sbjct: 104 AHVDIPGTALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVRVLDIACAPVGFDARFSALR 163 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+ T + + P+ LD ++M A++ L+G DF F H ++ Sbjct: 164 RHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDLLGLRDFAVFCR-HRHGATT 222 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + + + G LI + A +F + +RS +G+L VGD + T + L R Sbjct: 223 IRELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRS 282 Query: 229 ECGPLAPPEGLYFDSVEYS 247 AP GL F V+Y Sbjct: 283 SDFTTAPAHGLTFIRVDYP 301 >gi|320333111|ref|YP_004169822.1| tRNA pseudouridine synthase A [Deinococcus maricopensis DSM 21211] gi|319754400|gb|ADV66157.1| tRNA pseudouridine synthase A [Deinococcus maricopensis DSM 21211] Length = 266 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + ++++G+ + GWQ Q N S+Q + A + + AGRTD+GVHA Sbjct: 13 VRYRLTVQWDGTHFAGWQSQPNARSVQDDLHAAFKALGMQAFRPVAAGRTDAGVHAEAMP 72 Query: 62 AHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D +P + +++L+ + FHARFS R+Y YR++ Sbjct: 73 VHVDALSASARIPAARLARA-LNAHLPTDVAVLDAAPAPAHFHARFSCTERAYSYRVLNA 131 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GRA L+ LD M++AA L+G HDF F + + +R + +V Sbjct: 132 PQRQPLWAGRALLVHAPLDVAAMQVAATQLLGEHDFAAFATR--EERQTVRRLHALEVRP 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+E+ V SFL +R VG+L +VG+G+ ++D+ L + R GP PP GL Sbjct: 190 VGPLLEVHVRGESFLRHMVRGIVGTLLMVGEGRLGASDVAGILVGRARSGAGPNVPPHGL 249 Query: 240 YFDSVEY 246 YF Y Sbjct: 250 YFTDASY 256 >gi|297625831|ref|YP_003687594.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921596|emb|CBL56150.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 292 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 9/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R+ + + Y+G+ + GW Q +++G + + + G + V + AGRTD+GVHA Sbjct: 4 RRFRLDLSYDGTHFHGWAMQPGQRTVEGELATWLTRIAGTAQPVRLVVAGRTDAGVHARG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT- 118 QVAH DL L + L + I + L++ F ARF+AI R Y+YR+ Sbjct: 64 QVAHADLPATMDAAELKRRL--LRALPPDIVVRRLTVAPPGFDARFAAIWRRYVYRLWDL 121 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P L +G LD E M A L+G DF F + ++ IRT+ + Sbjct: 122 SSHPDPLLRGMVTTKSLDLDPELMTAAGSRLLGLRDFAPFCRRR-EGATTIRTLLQCEAR 180 Query: 179 SFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + IE+ V A +F H+ +RS G+L VG G + L++ R + P Sbjct: 181 RVADGCGTIELTVRADAFCHSMVRSLTGALVAVGSGTQSMDWLDEVAAGPTRAGSVTVMP 240 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 241 ARGLCLEQVAY 251 >gi|332669550|ref|YP_004452558.1| tRNA pseudouridine synthase A [Cellulomonas fimi ATCC 484] gi|332338588|gb|AEE45171.1| tRNA pseudouridine synthase A [Cellulomonas fimi ATCC 484] Length = 316 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 121/267 (45%), Gaps = 22/267 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-----GEIVV-VHGAGRTDSGV 55 +R + + Y+G+ + GW RQ ++QG +E A+ V GE V AGRTD+GV Sbjct: 17 VRLRLDLAYDGTSFSGWARQPALRTVQGVLEDALATVLRTAAHGEPAPHVTVAGRTDAGV 76 Query: 56 HALRQVAHFDLV-------REWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFS 106 HA QVAH D+ R AL A L + + + +++ F ARFS Sbjct: 77 HARGQVAHMDVAPHVLDAVRGRSDRTPTDALVARLAGVLPADVVVHRVAVAPLGFDARFS 136 Query: 107 AIRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+RR Y YRI A L + + LD M AA+ LVGRHDF + + Sbjct: 137 ALRRRYAYRICDDSGARDPLSRAHVLWHRRPLDVAAMDAAARTLVGRHDFAAYCKPR-EG 195 Query: 166 SSPIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 ++ IRT++ F L+ RV A +F H+ +R+ VG+ VG+G+ + Sbjct: 196 ATTIRTLEEFVWERASGGAEAGLVVARVQADAFCHSMVRALVGASVAVGEGRRPVAWPAQ 255 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 L R + GL + V Y Sbjct: 256 LLAGGRRDAAAHVVAAHGLTLEEVGYP 282 >gi|297571891|ref|YP_003697665.1| tRNA pseudouridine synthase A [Arcanobacterium haemolyticum DSM 20595] gi|296932238|gb|ADH93046.1| tRNA pseudouridine synthase A [Arcanobacterium haemolyticum DSM 20595] Length = 293 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 120/268 (44%), Gaps = 24/268 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW Q ++Q +EKA+ +V E VV+ AGRTD+GVHA QVA Sbjct: 10 RVRLDLGYDGNHFHGWAAQPGLRTVQDELEKALSVVFREPVVLTVAGRTDAGVHARHQVA 69 Query: 63 HFDLVR-----------EWVPVILCKALNAYLKIS------------DTISILNLSIVDK 99 H D+ R L LN+ L S + + + V Sbjct: 70 HCDVSRAAWDALPGRSSRTPGESLVLRLNSLLARSAGGVVAGAPRGYSDVVVHSALEVPA 129 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFSA+ R+Y YRI A ++ + LD + M A+ L+G HDF ++ Sbjct: 130 DFDARFSALWRAYTYRIADSVAEWDPQRHDVLWLSDRLDLDAMNRASVALLGEHDFLSYC 189 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + +S IRT+ ++ R A +F H+Q+R+ +G+L VG G Sbjct: 190 KPR-EGASTIRTLLDLGFERVEGIVVGRAKADAFCHSQVRTLMGTLIEVGRGAREERWPL 248 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 L+ R +APP L + + Y Sbjct: 249 LRLEECSRDGQVVVAPPHPLTLEEIGYP 276 >gi|145219589|ref|YP_001130298.1| tRNA pseudouridine synthase A [Prosthecochloris vibrioformis DSM 265] gi|238685549|sp|A4SE87|TRUA_PROVI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145205753|gb|ABP36796.1| tRNA pseudouridine synthase A [Chlorobium phaeovibrioides DSM 265] Length = 243 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 105/247 (42%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + +EY+G+ + GWQRQ NG ++QG IE + + E + + AGRTD GVHA Sbjct: 1 MPNIRLDVEYDGTSFAGWQRQPNGIVTVQGEIEAVLSEILQEKINLAAAGRTDRGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + +LN L +I I + +V FHARFSA+ R Y Y I Sbjct: 61 QVVNFSTRSPLEHSRIRHSLNCLL--PSSICIPSSQLVPDDFHARFSALERQYRYFAI-- 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P AL +D M+ + L G HDF+ F + + T+ Sbjct: 117 PEPSALMGRYTGCSHGDVDFALMQHLSSGLRGTHDFSLFSREDRDGNGSLCTVREAGWYR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL + +R VG + G G+ + L A GL Sbjct: 177 HKGVMVFHIAANRFLRSMVRGIVGGMLSAGRGELDPEEYLGMLGGGGGGMRVKPAVASGL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLWRVRY 243 >gi|110598437|ref|ZP_01386709.1| tRNA pseudouridine synthase A [Chlorobium ferrooxidans DSM 13031] gi|110339971|gb|EAT58474.1| tRNA pseudouridine synthase A [Chlorobium ferrooxidans DSM 13031] Length = 244 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 8/249 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQRQ K ++QG IE A+ ++ E + + AGRTD GVHA Sbjct: 1 MKNIRITVEYDGTPYSGWQRQNRKGCVTVQGEIESALGMILQEKISLAAAGRTDKGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q+A+F + +LNA L DTI I + + K+FH+R SA R Y Y +I Sbjct: 61 AQIANFSTASPMDLSRMVHSLNALL--PDTIRITDPLEMPKEFHSRHSARERHYRYFLI- 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P A+ + + D M+ A + G HDF+ F + + T+ Sbjct: 118 -AEPSAIYGRFSGCSFGTPDLAVMQQVAGSVRGVHDFSAFSREDRDSPGRLCTVTACQWY 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPE 237 + + + + + A FL + +R V + G G ++ + ++ L+ + P+AP Sbjct: 177 RYQHFLVLSISANRFLRSMVRYLVDGMLRAGKGTLSAEEFKRMLETGVMTTQLNPVAP-S 235 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 236 GLFLWRVTY 244 >gi|284033969|ref|YP_003383900.1| tRNA pseudouridine synthase A [Kribbella flavida DSM 17836] gi|283813262|gb|ADB35101.1| tRNA pseudouridine synthase A [Kribbella flavida DSM 17836] Length = 270 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 123/250 (49%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R+ + + Y+G+ + GW RQ ++QG++E+A+ V + V AGRTD+GVHA Sbjct: 1 MRWRIDLRYDGTEFHGWARQDGLRTVQGALEEALGTVLRLPDRPAVTCAGRTDTGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV H DL L + LN L D +++ ++ F ARFSA+ R Y+YR+ Sbjct: 61 QVTHVDLDVPVTGRDLLRRLNGVL--PDDVAVTAVAEAADGFDARFSALARRYVYRLCDD 118 Query: 120 QA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + + + LD + M AA L+G HDF F + +S +R + + Sbjct: 119 AVGWDPLRRREVLRVVRPLDVDRMNAAAAQLLGEHDFAAFCKKR-EGASTVRALLEYSWV 177 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G L++ V+A +F H+ +R+ VG+L VGDG+ L + R + P Sbjct: 178 RVGPGLLDGTVIADAFCHSMVRALVGALIPVGDGRRDVDWPAAVLAGKMRDSAVAVLPAH 237 Query: 238 GLYFDSVEYS 247 GL + V Y Sbjct: 238 GLTLEEVRYP 247 >gi|237741391|ref|ZP_04571872.1| tRNA pseudouridine synthase A [Fusobacterium sp. 4_1_13] gi|229430923|gb|EEO41135.1| tRNA pseudouridine synthase A [Fusobacterium sp. 4_1_13] Length = 245 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 120/249 (48%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MGRKNIKIEFRYDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 61 HQVSNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYIYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ P E + + + + + VG HDF FR C + IR I +V Sbjct: 119 KKNP--FEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVK 176 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG N I+I + +FL +Q+R VG+ + G+ + L ++ L E Sbjct: 177 YFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAE 236 Query: 238 GLYFDSVEY 246 GLY + + Y Sbjct: 237 GLYLNKISY 245 >gi|88854648|ref|ZP_01129314.1| tRNA pseudouridine synthase A [marine actinobacterium PHSC20C1] gi|88815809|gb|EAR25665.1| tRNA pseudouridine synthase A [marine actinobacterium PHSC20C1] Length = 315 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 122/269 (45%), Gaps = 24/269 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHAL 58 R + I Y+G+ + GW +Q + ++QG+IE A+ F G + + AGRTD+GVHA Sbjct: 28 TRMRLDIAYDGTDFAGWGKQPSLRTVQGTIEDALGVIFRRFGAVPSLVVAGRTDAGVHAS 87 Query: 59 RQVAHFDLV------------------REWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 QVAH DL R P L + +N + I + +I Sbjct: 88 GQVAHLDLTDAQLISLDRPRRGNLRGKRYDGPASLARRINGIAGLEADIFLSRSAIAADG 147 Query: 101 FHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R Y YRI +P ++ P +LD + M IA+ L+G HD+ + Sbjct: 148 FDARFSPLWRRYEYRIADNASPRDPRQRNHTVWYPATLDVDAMNIASDELLGLHDWAAYC 207 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + ++ +R+++ F+ I + + A +F H+ +RS VG+ VG GK Sbjct: 208 KPR-EGATTVRSLERFNWVRNEEGIIVAELRADAFCHSMVRSLVGAGVFVGQGKLEVDRP 266 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + + + P +GL V Y Sbjct: 267 VEIRDERSKGSEYKVMPAKGLTLVEVGYP 295 >gi|34762680|ref|ZP_00143671.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887637|gb|EAA24715.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 245 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MGRKNIKIEFRYDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 61 HQVSNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYVYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + + + + VG HDF FR C + IR I +V Sbjct: 119 EKNP--FEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVK 176 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG N I+I + +FL +Q+R VG+ + G+ + L ++ L E Sbjct: 177 YFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLNDFTKEYKKNLVEAE 236 Query: 238 GLYFDSVEY 246 GLY + + Y Sbjct: 237 GLYLNKISY 245 >gi|145352156|ref|XP_001420422.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580656|gb|ABO98715.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 308 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 35/280 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHAL 58 RY +EY+G+ + G+QRQ +++QG++++A+ TG + G+ RTD GVHAL Sbjct: 12 PRYLAFLEYDGARFRGFQRQCGVAATVQGALDEALTAFTGARGAIECVGSSRTDVGVHAL 71 Query: 59 RQVAHFD---------LVREWVPVILCKALNAYLK-ISDTISILNLSIVDK---QFHARF 105 R AHFD V + + +N +L+ + + + VD+ +FHAR Sbjct: 72 RNSAHFDFARTTKDGTTVEPHDGASVRRGVNYHLRKLGAAVRVTECVRVDEMNPKFHARH 131 Query: 106 SAIRRSYLYRIITRQAPL---ALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTF 158 A+ R Y Y I+ + + RAW + L+ + MR AA L G HDF++F Sbjct: 132 DAVARRYRYDILVGERDDGGSLFDAERAWYVRATCDGRLNVDAMRDAAAALTGTHDFSSF 191 Query: 159 RSIHCQASSPIRTIDHFDVNSF------------GNLIEIRVVARSFLHTQIRSFVGSLK 206 R+ CQASSP+RT+ DV I I V A SFL+ Q+R G+LK Sbjct: 192 RANGCQASSPVRTLTSIDVKEELTEWPAAEARGTKQKISIAVAAPSFLYHQVRLLAGALK 251 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG T D+++ L+A+D +AP GLY V Y Sbjct: 252 AVGANDLTVKDVQELLEAKDVARAPQMAPAHGLYLADVAY 291 >gi|227485306|ref|ZP_03915622.1| tRNA-pseudouridine synthase I [Anaerococcus lactolyticus ATCC 51172] gi|227236766|gb|EEI86781.1| tRNA-pseudouridine synthase I [Anaerococcus lactolyticus ATCC 51172] Length = 246 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 105/245 (42%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + ++G + G+Q Q + S++ + KAI VTGE + GRTD+GVHA Sbjct: 4 NVLLKLAFDGRDFKGYQYQIDQRSVEEELRKAIKEVTGEDNRIIACGRTDAGVHARSFYI 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F + P + +L D I L+ V FHARFS ++Y Y I + P Sbjct: 64 NFLTACDVNPKGFAYHIQPHL--PDDILALSSKEVGLDFHARFSCKSKTYKYIINQEKNP 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSFG 181 + + I LD + + + L G HDF F + R ID Sbjct: 122 HPIYRSYMENITYRLDYDKLDEGLEILKGDHDFRLFMKEDKNIDINTNRRIDDCYFKRGE 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ A SFLH Q+R GSL + GK + D + +K P P GLY Sbjct: 182 TRLELYFKAESFLHNQVRIMTGSLIELARGKLSLDDFKAYFDPATKKRANPALSPVGLYL 241 Query: 242 DSVEY 246 VEY Sbjct: 242 WEVEY 246 >gi|332185222|ref|ZP_08386971.1| tRNA pseudouridine synthase A [Sphingomonas sp. S17] gi|332014946|gb|EGI57002.1| tRNA pseudouridine synthase A [Sphingomonas sp. S17] Length = 223 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 113/220 (51%), Positives = 144/220 (65%), Gaps = 1/220 (0%) Query: 28 QGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD 87 Q ++E AI VTGE VH AGRTD+GVH L AH D+ + P L +A+NA ++ Sbjct: 2 QQALEDAIHAVTGERTAVHAAGRTDAGVHGLAMRAHVDIAKVIAPFRLMEAINARIR-PA 60 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 +++L+ V +HARFS IRRSY YRI+ R+APL E G AW +P++LD M AA Sbjct: 61 PVAVLDCVEVASDWHARFSCIRRSYEYRIVNRRAPLTHELGLAWQVPQALDEAAMAEAAA 120 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 LVGRHDFTTFRS+HCQA SP+RT+D V G + IR ARSFLH Q+RS VG L L Sbjct: 121 RLVGRHDFTTFRSVHCQADSPVRTLDLLSVERDGARLFIRAAARSFLHHQVRSMVGCLAL 180 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VG G+WT D+E AL A+DR + G AP +GL+F +Y Sbjct: 181 VGMGRWTPDDVEAALVARDRAQLGLNAPSDGLFFVRADYP 220 >gi|256846563|ref|ZP_05552020.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_36A2] gi|256718332|gb|EEU31888.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_36A2] Length = 245 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 118/249 (47%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MGRKNIKIEFRYDGSRYYGFQRQPKKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAY 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 61 HQVSNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYIYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + + E + VG HDF FR C + IR I +V Sbjct: 119 EKNP--FEARYCKFVKEKIVVEKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVK 176 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG N I+I + +FL +Q+R VG+ + G+ + L ++ L E Sbjct: 177 YFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAE 236 Query: 238 GLYFDSVEY 246 GLY + + Y Sbjct: 237 GLYLNKISY 245 >gi|261415083|ref|YP_003248766.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371539|gb|ACX74284.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325886|gb|ADL25087.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] Length = 250 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 125/252 (49%), Gaps = 12/252 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 +RY EY GS ++GWQ Q G ++Q ++E+A+ + V G+GRTD+GVH Sbjct: 1 MRYRFRCEYLGSAFYGWQEQNCGGKLRFVTVQSTLEEALSTALRAPIRVVGSGRTDTGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q HFD E P + +++N K I I +L F+AR+ A+ R Y Y I Sbjct: 61 ARGQCVHFDFDGELDPQKVVRSVNGLTKR--LIRIRDLEPCASDFNARYDAVLRYYQYTI 118 Query: 117 ITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 TR P+AL + W +LD E M AQ +G HDF F S + T+ F Sbjct: 119 FTR--PVALMRDFGWECGSLNLDIEAMGREAQSFLGEHDFIDFCIPRNDGKSTLCTLSEF 176 Query: 176 DVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + + FLH Q+R+ VG+L VG G++ + + + ++ K A Sbjct: 177 RLERLNDWSCMFHIKGNRFLHRQVRAMVGTLFDVGRGRYPEGTVNQIFE-KNFKGERTWA 235 Query: 235 PPEGLYFDSVEY 246 PP+GL ++VEY Sbjct: 236 PPQGLVLENVEY 247 >gi|126654438|ref|ZP_01726177.1| pseudouridylate synthase I [Bacillus sp. B14905] gi|126589112|gb|EAZ83311.1| pseudouridylate synthase I [Bacillus sp. B14905] Length = 214 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 4/216 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q IE+ + ++ E V V +GRTD+ VHA Sbjct: 1 MRRLKVIISYDGTLFSGYQVQPGERTVQAEIERVLAIMHKEEKVKVTASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN L I ++++ V+ FHAR+S + Y Y Sbjct: 61 QTLHFDTPLAIPADKYRKALNVQL--PRDIRVMSVEEVEHDFHARYSVTGKRYRYIWSCE 118 Query: 120 QAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + D M+ AAQ ++G HDF+ F + + +RT+ Sbjct: 119 PIQNPFRRHYTVETNGVKPDVVAMQKAAQAIIGTHDFSCFCASNTSVQDKVRTVTSLQFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 G + + + FL+ +R G+L VG + T Sbjct: 179 WHGEELHMVIEGSGFLYNMVRIIAGTLWEVGIDRRT 214 >gi|151554108|gb|AAI49177.1| PUSL1 protein [Bos taurus] Length = 312 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 128/277 (46%), Gaps = 36/277 (12%) Query: 3 RYCMIIEYNGSGY------FGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGV 55 RY + +Y G+ + G QR +Q +E+A + V + RTD+GV Sbjct: 34 RYLVYFQYLGTDFNGVAAVRGVQR---AVGVQNYLEEAAERLNSVMPVKFTISSRTDAGV 90 Query: 56 HALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HAL AH D+ R + P +L +ALN +LK I +L V FHAR +AI R Sbjct: 91 HALSNAAHLDIQRRSDLPPFSPEVLTEALNTHLKHP-AIRVLQAFRVPSHFHARHAAISR 149 Query: 111 SYLYRIITRQAPL----ALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 +YLYR+ T E+ R W + LD M+ AAQHL+G HDF+ F+S A Sbjct: 150 TYLYRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPA 209 Query: 166 SSPIRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 SSP+RT+ V+ + ++SFL+ Q+R L VG G Sbjct: 210 SSPVRTLRRASVSPDPASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGA 269 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEYS 247 ++ L+++D K +AP GL+ SV Y Sbjct: 270 LMPAQVKAILESRDPLGKHQSRVAPAHGLFLKSVLYE 306 >gi|84494739|ref|ZP_00993858.1| tRNA pseudouridine synthase [Janibacter sp. HTCC2649] gi|84384232|gb|EAQ00112.1| tRNA pseudouridine synthase [Janibacter sp. HTCC2649] Length = 283 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 75/258 (29%), Positives = 116/258 (44%), Gaps = 14/258 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW Q +++G + A+ + E V + AGRTD+GVHA Q Sbjct: 5 RVRIDLAYDGTDFSGWAAQPGRRTVEGELSAALTTLLRAPEPVRLTVAGRTDAGVHARGQ 64 Query: 61 VAHFDLVREWVPVILCK-------ALNAYL--KISDTISILNLSIVDKQFHARFSAIRRS 111 V H D+ + + A L + + + +S F ARF+A+RR Sbjct: 65 VVHADVDDTLYAALPGRSSRSPEEAARTRLAGILPSDVVVRAVSRAPDGFDARFAALRRR 124 Query: 112 YLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 YLYRI A L +G ++ LD M AA LVG HDF F ++ +R Sbjct: 125 YLYRICDDPGALDPLRRGDTVVLKDPLDVAAMNEAAGRLVGLHDFAAFCKKR-DGATTVR 183 Query: 171 TIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ + + +E VVA +F H+ +R+ VGS+ VG G+ + L R Sbjct: 184 TLLDYSWVRAPDGTVEATVVADAFCHSMVRALVGSVVPVGMGRAEVDFPREVLTGGARDP 243 Query: 230 CGPLAPPEGLYFDSVEYS 247 + P GL + V Y Sbjct: 244 RVKVMPAHGLSLEEVTYP 261 >gi|18977290|ref|NP_578647.1| tRNA pseudouridine synthase A [Pyrococcus furiosus DSM 3638] gi|24638312|sp|Q8U2C1|TRUA_PYRFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|18892961|gb|AAL81042.1| putative tRNA pseudouridine synthase a [Pyrococcus furiosus DSM 3638] Length = 266 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 24/247 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + G+QRQ N +I+G I +A+ E A RTD GV A V Sbjct: 1 MRVALKIAYDGTKFHGFQRQPNVRTIEGEILRALKDAGIEFENFKSASRTDRGVSARGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + + LN+ + + I ++ V + FH RF A + Y Y + + Sbjct: 61 IALSTEDDRIKNPMV--LNSRMS---DVWIWGIAEVPEDFHPRFWANTKVYRYYLPSL-- 113 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++ + M+ + +G HDF+ F + IR+ID ++ Sbjct: 114 --------------GMNIKKMKECSLLFLGTHDFSAFSRV--DGRDTIRSIDRIEIWEKC 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLY 240 N++ + + +SFL +R V +L L G + + L + ++ P APPEGL Sbjct: 158 NVVVVEIEGKSFLWEMVRRIVSALVLCSQGVLAEERIVEMLNGKFEKSRKVPPAPPEGLL 217 Query: 241 FDSVEYS 247 ++Y Sbjct: 218 LWDIKYE 224 >gi|325972112|ref|YP_004248303.1| tRNA pseudouridine synthase A [Spirochaeta sp. Buddy] gi|324027350|gb|ADY14109.1| tRNA pseudouridine synthase A [Spirochaeta sp. Buddy] Length = 281 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 113/252 (44%), Gaps = 8/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R M + Y+GS Y GWQ+Q N S+ IE+ + + E V V G+GRTDSGVHAL QV Sbjct: 19 RRIRMTVSYHGSHYSGWQKQSNAKSVAEIIEQTLKQILDEEVQVVGSGRTDSGVHALAQV 78 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H D+ + ALN L I IL+ D FHAR++ + R+Y Y Sbjct: 79 CHMDIANTRIKGEKFALALNRLL--PADIRILDSCETDGTFHARYTTMARTYRYYYKREC 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----HFD 176 A + + + E + A + G HDFTTF + S R I + Sbjct: 137 DMTAFDDKLVAKVKQFPSLELLNEYACSIRGTHDFTTFTASGDLCPSRFRDIYESYWRLE 196 Query: 177 VNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ FG L+ + +FL+ +RS VGS+ + L ++DR G A Sbjct: 197 IDRFGKELLSYTICGNAFLYKMVRSLVGSMMEFATKDLPVEEFRHILASKDRSRSGRTAS 256 Query: 236 PEGLYFDSVEYS 247 GLY + Y Sbjct: 257 ACGLYLYRISYD 268 >gi|163840856|ref|YP_001625261.1| tRNA pseudouridine synthase A [Renibacterium salmoninarum ATCC 33209] gi|162954332|gb|ABY23847.1| tRNA pseudouridine synthase A [Renibacterium salmoninarum ATCC 33209] Length = 297 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 19/263 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW Q ++QG +E ++ ++ +V V AGRTD+GVHA QV Sbjct: 18 RLRLDLAYDGAPFSGWALQPERLTVQGVLEDSLAMILRRLVRVTVAGRTDAGVHARGQVV 77 Query: 63 HF-DLVREW----------VPVILCKALNAYL-----KISDTISILNLSIVDKQFHARFS 106 H EW + + L L + + + + ++ + F ARFS Sbjct: 78 HAEFYPHEWEQIARRSTASPEEAVLRRLRGALSRVLGEQTGAVVVHSVRPAEPGFDARFS 137 Query: 107 AIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y Y I R A +++ W LD E + +A Q L+G DF F Sbjct: 138 ALWRRYSYHIADRPAQWDPVQRQMTWWHKTELDVELLNLAVQPLLGLQDFRAFCKPRP-G 196 Query: 166 SSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ +R + + + + I++ V A +F H +R+ +GS VG G+ + L + L Sbjct: 197 ATTVRELQRLEFSRQPDGTIKVAVQADAFCHNMVRALIGSAVQVGSGEQSPDWLAERLAI 256 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + R LAPP L + V Y Sbjct: 257 KVRDAKSGLAPPHPLVLEEVHYP 279 >gi|159469598|ref|XP_001692950.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158277752|gb|EDP03519.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 239 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 108/237 (45%), Gaps = 16/237 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHALRQ 60 Y +I+ Y+G+ Y GWQ Q ++Q +E A+ V E V G AGRTDSGVHA Q Sbjct: 5 YRLILAYDGTDYCGWQLQPAAPTVQAKLEAALGTVLREDRGVLGVRAAGRTDSGVHARGQ 64 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V R +P L LNA L I ++ + F S I ++Y Y I Sbjct: 65 VRTGLTGRGGLPVDKLAYKLNAVL--PPDIRVMGVRRTAPDFSVTCSPIGKTYHYNITNS 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-----CQASSPIRTIDH 174 +A L A+ + K LD MR AA LVG HDFT F +I + +P++T+ Sbjct: 123 EAHDPLRHRYAYHVRKPLDLAGMRAAAALLVGTHDFTQFSNIGEEGGRPRKRNPVKTLRR 182 Query: 175 FDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 DV F + I V FL+ +R G L VG+ K + + L+ D Sbjct: 183 MDVVELDPAAFPGGVRIEVEGNGFLYKMVRHISGVLVAVGERKLPPGIVSEMLEVGD 239 >gi|294784150|ref|ZP_06749451.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_27] gi|294488220|gb|EFG35565.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_27] Length = 245 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 1 MGRKNIKIEFRYDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAY 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 61 HQVSNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKIREYIYIISW 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P E + + + + + VG HDF FR C + IR I +V Sbjct: 119 EKNP--FEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVK 176 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG N I+I + +FL +Q+R VG+ + G+ + L ++ L E Sbjct: 177 YFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAE 236 Query: 238 GLYFDSVEY 246 GLY + + Y Sbjct: 237 GLYLNKISY 245 >gi|148243240|ref|YP_001228397.1| tRNA pseudouridine synthase A [Synechococcus sp. RCC307] gi|147851550|emb|CAK29044.1| tRNA pseudouridine synthase A [Synechococcus sp. RCC307] Length = 291 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 114/254 (44%), Gaps = 10/254 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-------VTGEIVVVHGAGRTDSG 54 R + ++Y+G + GWQRQ S+Q S+++AI + ++ AGRTD+G Sbjct: 4 QRIALCLQYDGGPFCGWQRQPQHRSVQQSLDEAIEALDPLPAGIAAKLSRTIAAGRTDTG 63 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV HFD ALN L +I + + V +HA FSA R Y Y Sbjct: 64 VHAAAQVVHFDCHGPIPAARWAPALNGRL--PGSIRVRASAAVAANWHACFSATYRRYRY 121 Query: 115 RIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 I + P +W L M+ Q L+G HDF+ F+ Q + T+ Sbjct: 122 CIYNARRPNLFLSPFSWHRYQWRLQDHLMQELLQELLGHHDFSAFQRAGSQRAHARTTVQ 181 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G+++ + + A FL+ +R VG L G+G+ + + + Q R E Sbjct: 182 EVSLQREGDILTLEIQASGFLYGMVRLLVGQLVAAGEGRISPEQFRQRWREQRRDEVKEA 241 Query: 234 APPEGLYFDSVEYS 247 APP+GL V Y Sbjct: 242 APPQGLCLLRVGYP 255 >gi|57640862|ref|YP_183340.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1] gi|62901178|sp|Q5JI92|TRUA_PYRKO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57159186|dbj|BAD85116.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1] Length = 267 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 115/250 (46%), Gaps = 26/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 ++ + + Y+GS ++G+QRQ +++G I K + + + E GA RTD GV A Sbjct: 1 MKLALRVAYDGSAFYGFQRQPGVRTVEGEIIKVLQKLGIIESPEKNDFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V F + E + + LN +L + +L ++ V FH RF A ++Y Y ++ Sbjct: 61 FFNVVSF-VPSERPDLARPEVLNHHLS---DVWVLGIAEVPDDFHPRFWAKFKTYRYYLV 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D MR A VGRHDF+ F + PIR ++ +V Sbjct: 117 N----------------EGFDLSAMRECASLFVGRHDFSAFAKLEP-GRDPIREVERVEV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I V +SFL +R V +L+ G G + ++E+ L + + + P APPE Sbjct: 160 IERQGYLVIEVQGKSFLWEMVRRIVNALRFCGLGLLEAEEVERML-SGEYGKKIPPAPPE 218 Query: 238 GLYFDSVEYS 247 GL +EY Sbjct: 219 GLVLWHIEYP 228 >gi|313836079|gb|EFS73793.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA2] gi|314929615|gb|EFS93446.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL044PA1] gi|314970609|gb|EFT14707.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA3] Length = 279 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E+ I V G + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWAVQPDRRTVQGDLERWIPRVLRLGVPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ++ V +F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDGVDTSSMLRRLSRVL--DPDVVVKSIRSVPDEFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + +P+ LD + + A L+G DF F + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVASVPRHLDLDRLNAAGASLLGLRDFAAFCKYR-EGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ L++ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGQRNQGWLDEVAASASRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLTLEEVGYP 250 >gi|227549870|ref|ZP_03979919.1| tRNA-pseudouridine synthase I [Corynebacterium lipophiloflavum DSM 44291] gi|227078125|gb|EEI16088.1| tRNA-pseudouridine synthase I [Corynebacterium lipophiloflavum DSM 44291] Length = 285 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 119/264 (45%), Gaps = 21/264 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG------SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 R + I Y+G+ + GW RQ+ ++Q +I+ A+ V V + AGRTD+GVH Sbjct: 7 RLRLDIAYDGTDFHGWARQREQPDGTPTRTVQQTIQSALSTVLRTPVELTVAGRTDAGVH 66 Query: 57 ALRQVAHFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 A QVAH D+ + P L + L L + + +S V F ARFSA+ Sbjct: 67 ASGQVAHADIPAASLDQRSIDGDPARLVRRLAKLL--PADVRVYGVSAVSPLFDARFSAL 124 Query: 109 RRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 RSY+YR+ T A L + + +D M++AA VG HDF F A++ Sbjct: 125 TRSYVYRVTTHPAGALPTRARDTAVWRRPVDIGAMQVAADAFVGLHDFAAFCRAKPHATT 184 Query: 168 PIRTIDHFDVN----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + ++ V NL E V A +F +RS V + VG+G T +E L Sbjct: 185 VRKVVEMRWVEASTGEEPNLYEAHVTADAFCWNMVRSLVAACLQVGEGSKDPTWVEPLLG 244 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 R LAP +GL V Y Sbjct: 245 ETTRHPHVLLAPAKGLTLVDVSYP 268 >gi|262203538|ref|YP_003274746.1| tRNA pseudouridine synthase A [Gordonia bronchialis DSM 43247] gi|262086885|gb|ACY22853.1| tRNA pseudouridine synthase A [Gordonia bronchialis DSM 43247] Length = 291 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 13/255 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y G+ + GW RQ + ++ +E + V V + AGRTD+GVHA QV Sbjct: 16 RLRLDVGYEGTDFAGWARQTDQRTVGAVLEDTLATVLRIPVRLTVAGRTDAGVHATGQVC 75 Query: 63 HFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 H D+ P +L L L D + + ++ V F ARFSA+RR Y Y Sbjct: 76 HTDIPVSALQTRSIGGDPSLLVGRLAKML--PDDVRVKEIASVSGDFDARFSALRRHYEY 133 Query: 115 RIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R+ + + + LD + M A+ L+G +DF F + ++ IR + Sbjct: 134 RLTDARWGAEPIHARTTATWRRPLDVDAMNAASASLLGLNDFAAFCRRR-EGATTIRDLQ 192 Query: 174 HFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 F G ++ +V A +F + +RS VG++ VGDG+ L R P Sbjct: 193 QFSWTRHAGGVLVGQVSADAFCWSMVRSLVGAVASVGDGRRDIDWCRGLLAETQRSSQVP 252 Query: 233 LAPPEGLYFDSVEYS 247 +A GL V+Y Sbjct: 253 VADACGLCLVRVDYP 267 >gi|115375174|ref|ZP_01462441.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] gi|115367825|gb|EAU66793.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 221 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 99/203 (48%), Gaps = 3/203 (1%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 + AGRTDSGVHA QV FD R+ + LN L + I+++ V F R Sbjct: 1 MVAAGRTDSGVHATGQVVCFDTERQLPLKAYHRGLNGLL--PEDIAVVRAEEVSAAFDPR 58 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + + Y YR+ + L + W I L E M AA L+GRHD++ FR+ CQ Sbjct: 59 RWSRGKRYRYRVSNLPSRSPLRRHTHWEIYAPLQVEAMARAATSLLGRHDYSAFRASDCQ 118 Query: 165 ASSPIRTIDHFDVN-SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 A+ +R + V + G+ + V +FL +R+ VG+L VG G+ + + L Sbjct: 119 AAHAVREVRRLSVEGTPGDAVAFVVEGTAFLKHMVRNLVGTLVEVGKGRRPEAWVAEVLA 178 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 + DR GP APP GL + V Y Sbjct: 179 SGDRTLAGPTAPPHGLVLEEVFY 201 >gi|256370635|ref|YP_003108460.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri SMDSEM] gi|256009427|gb|ACU52787.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri SMDSEM] Length = 270 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 28/270 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y GS FGWQ QK SIQ +IE + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFIEISYKGSSLFGWQIQKKNLSIQETIETCLSFLLKKKIKIIGAGRTDTGVHAIQMF 60 Query: 62 AHFDLV------------------------REWVPVILCKALNAYLKISDTISILNLSIV 97 AHFDL + + LN++L I I+N+ V Sbjct: 61 AHFDLTFDLTFDLTFDLTFDLTFDLTFDLTKNHINNHFKSKLNSFL--PLNIKIINIFSV 118 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 K HARF+AI R Y YRI + P + WL ++ + ++ A L DF++ Sbjct: 119 KKNIHARFNAISRVYEYRISLSKDPFLFQTSWQWLSKNQIELKILKKGANILKKYKDFSS 178 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 F + + + I N++ R+ A FL +RS VG+L +G K T D Sbjct: 179 FCKEKSKKN--LCEISTAKWILKKNILYFRIEANRFLRNMVRSLVGTLIELGIKKITIKD 236 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 K ++A++R G AP +GL+ + Y Sbjct: 237 FIKIIEAKNRNLAGITAPAKGLFLIKINYP 266 >gi|328955882|ref|YP_004373215.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2] gi|328456206|gb|AEB07400.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2] Length = 299 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 117/250 (46%), Gaps = 10/250 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ---VA 62 + + Y+G+ Y G+ Q + ++ G + +A+ + + AGRTD+GVHA+ Q VA Sbjct: 44 LKLGYDGTRYSGFAEQPDRCTVAGEVRQAMETFLRRPIELICAGRTDAGVHAIGQHVSVA 103 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 E +A++A L IS+ + + F ARF A R+Y YRI Sbjct: 104 VLPAECEIPRARWLRAMDALL--PPDISVAGVFRARRGFSARFDARDRTYTYRIAAGSVR 161 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDVN 178 AL + W LD MR AA LVG HDF +F A P + +D + Sbjct: 162 PALIRPYVWWHRLELDEGAMRDAATCLVGEHDFKSFCRASSAAGRPTSRRVLDVDFAHES 221 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G N++ + +FLH+ +R+ VGSL VG + L AL A+DR GP AP Sbjct: 222 ELGENVLAFTIRGNAFLHSMVRTIVGSLAEVGTHRRDPAWLADALAARDRAAAGPTAPAC 281 Query: 238 GLYFDSVEYS 247 GL F V Y Sbjct: 282 GLCFMDVSYD 291 >gi|85057773|ref|YP_456689.1| tRNA pseudouridine synthase A [Aster yellows witches'-broom phytoplasma AYWB] gi|123738898|sp|Q2NIY3|TRUA_AYWBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84789878|gb|ABC65610.1| tRNA pseudouridine synthase A [Aster yellows witches'-broom phytoplasma AYWB] Length = 243 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y G+Q+Q ++Q + EKA+ +T + + A RTD GVH+ Q H Sbjct: 6 YKLILSYDGTFYCGYQKQPQKKTVQQTFEKALKKMTHQNIPTFAASRTDKGVHSQGQTLH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P K LN L I + + FHAR+SA + Y Y + PL Sbjct: 66 FQTTFSLKPKHFQKTLNYLL--PPDIRVRQMHFATPNFHARYSAKSKIYQYVFS--KKPL 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + D + A + + G H+F F S Q + +TI + + Sbjct: 122 NAFNHHFQIFADKFDFVKITKALKFIEGTHNFFAFTS-ETQPKNFSKTIFQASLKETVHK 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + FL IR VGSL +G K++ + L K+ LAP + L Sbjct: 181 YILVFHGNGFLKYMIRFLVGSLIEIGKNKFSLEQFQAMLLGNKTKKATLLAPAKALVLKK 240 Query: 244 VEY 246 + Y Sbjct: 241 IFY 243 >gi|328906179|gb|EGG25954.1| tRNA pseudouridine synthase A [Propionibacterium sp. P08] Length = 279 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E+ I V + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWAVQPDRRTVQGDLERWIPRVLRLSVPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ++ V +F ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDGVDTSSMLRRLSRVL--DPDVVVKSIRSVPDEFDARFSALWRRYVYRLWD 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + +P+ LD + + A L+G DF F + ++ IRT+ Sbjct: 119 ESSRPDPVTRFHVASVPRHLDLDRLNAAGASLLGLRDFAAFCKYR-EGATTIRTLLDCHA 177 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + +E+ V A +F H+ +RS VG+L V G+ L++ + R + Sbjct: 178 ERLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGQRNQGWLDEVAASASRASSVLVM 237 Query: 235 PPEGLYFDSVEYS 247 P GL + V Y Sbjct: 238 PACGLTLEEVGYP 250 >gi|327288532|ref|XP_003228980.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Anolis carolinensis] Length = 293 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 31/274 (11%) Query: 3 RYCMIIEYNGSGYFG-WQRQKNGSS--IQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y+G+ Y G + + ++ +Q +EKA + V + RTD+GVHAL Sbjct: 7 RYLISFQYSGTMYSGVMETPPHQATLGVQNYLEKAAEKLRPLVPVKFVISSRTDTGVHAL 66 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + +L +ALN LK + I +L V FHARFSA+ R+Y+ Sbjct: 67 CNTAHIDIERSGGKPPFSESVLVQALNRNLK-HEPIRVLAARRVSDTFHARFSALSRTYV 125 Query: 114 YRIITRQAPL----ALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQ--AS 166 YR++T + E+ W+ + LD M+ AA LVG HDF+TFRS + A Sbjct: 126 YRVVTGCSCPSDLPVFERNLCWVTQRGHLDLTAMQEAAGLLVGTHDFSTFRSASSELPAK 185 Query: 167 SPIRTIDHFDVNSFGNL------------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 +P++TID ++ E+ +RSFL+ Q+R G L VG + Sbjct: 186 NPVKTIDQLEIRPSSGFLMHHVKSSDLKFWELEFTSRSFLYKQVRRMAGVLVAVGQHRLD 245 Query: 215 STDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 ++ L +D P +AP GL+ +VEY Sbjct: 246 PECVKTLLDIRDLMAYPPSTIAPACGLFLKNVEY 279 >gi|308233892|ref|ZP_07664629.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] gi|328943600|ref|ZP_08241065.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] gi|327491569|gb|EGF23343.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] Length = 311 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 14/256 (5%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y G+ + G+ Q S++G + +A+ + + AGRTD+GVHA Q F Sbjct: 46 IRFGYVGTHFCGYAAQNESVRSVEGCLTRALSTFLRRNITLTCAGRTDAGVHAHAQYVSF 105 Query: 65 DLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + + + + K ++A + D ISI L F ARFSA RSY YRI Sbjct: 106 PITQSELGMSKHKIMSALSGLCPDDISIRTLYRAPLDFSARFSACERSYTYRIALGPLKP 165 Query: 124 ALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIHC------QASSPIRTIDHF 175 L W + + ++M A ++L G H+F +F Q S R + Sbjct: 166 ILTHEFVWWVKNIPHVCMDDMNAAGEYLAGEHNFKSFCKASSAQLLEEQGLSLNRCLTSI 225 Query: 176 DVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 V+ ++ + + +FLH +R SL VG G ++ L+ Q R Sbjct: 226 KVSRDYIVGEQILRLDITGNAFLHNMVRIITASLLEVGRGARQPDWIQDVLRQQTRTAAA 285 Query: 232 PLAPPEGLYFDSVEYS 247 AP +GL + V Y Sbjct: 286 MTAPAQGLTLERVGYP 301 >gi|227487069|ref|ZP_03917385.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227541767|ref|ZP_03971816.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51866] gi|227093143|gb|EEI28455.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227182473|gb|EEI63445.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51866] Length = 284 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 121/263 (46%), Gaps = 20/263 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 + I Y+G+ + GW QK G ++Q +IE+A+ LV + + AGRTD+GVHA Sbjct: 3 VNLRFDIAYDGTNFHGWATQKGGLRTVQQTIEEALRLVLRLDDSYQLTVAGRTDAGVHAT 62 Query: 59 RQVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 QVA+ + P L + LN L D IS+L +S + F ARF A+RR Sbjct: 63 GQVANMVVPESCLEQRSIDGDPARLTRRLNKLL--PDDISLLAVSAAPEAFDARFGALRR 120 Query: 111 SYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y YR+ TR PL L + K +D + + A VG HDF A + I Sbjct: 121 YYEYRVTTRPGGPLPLRRFDTATWKKPVDIDVVSACASAFVGLHDFAALCKHKPHA-TTI 179 Query: 170 RTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 RT++ F +V A +F + +RS VG+ VG+G+ + L Sbjct: 180 RTVETFTWEDISTPCEPQTYLAKVSADAFCWSMVRSLVGACLAVGEGRRDLSFAPHLLTL 239 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 ++R P+A GL V+Y Sbjct: 240 KERAADVPVASACGLTLTGVDYP 262 >gi|289706561|ref|ZP_06502911.1| tRNA pseudouridine synthase A [Micrococcus luteus SK58] gi|289556696|gb|EFD50037.1| tRNA pseudouridine synthase A [Micrococcus luteus SK58] Length = 297 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 77/261 (29%), Positives = 115/261 (44%), Gaps = 16/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW RQ S+QG++E + + V AGRTD+GVHA QV Sbjct: 19 VRVRLDLAYDGGAFHGWARQPGLDSVQGALEDGLERILRRPVRTVVAGRTDAGVHARGQV 78 Query: 62 AHFDLVRE------------WVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAI 108 AH DL L + L L + + F ARFSA+ Sbjct: 79 AHLDLTETEWAGLTRGRPGLEPAASLTRRLGGVLSGWGGAVVVHGAGRAPAGFDARFSAL 138 Query: 109 RRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y YRI A +G +LD M + A ++G HDF +F ++ Sbjct: 139 WREYEYRIDDAPAARDPRTRGFTHWHGAALDDRLMALEADAVLGLHDFLSFCRPRA-GAT 197 Query: 168 PIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 IR + H +V + ++ +R+ A +F H +R+ VG+L VG+G L + + Sbjct: 198 TIREVQHLEVRRDEDGVVRVRIRADAFCHNMVRAIVGALLQVGEGAREPGWLARRVARPA 257 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R LAPP GL +V Y Sbjct: 258 RDSEVRLAPPGGLTLLAVGYP 278 >gi|239918171|ref|YP_002957729.1| pseudouridylate synthase I [Micrococcus luteus NCTC 2665] gi|281415639|ref|ZP_06247381.1| tRNA pseudouridine synthase A [Micrococcus luteus NCTC 2665] gi|239839378|gb|ACS31175.1| pseudouridylate synthase I [Micrococcus luteus NCTC 2665] Length = 297 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 113/261 (43%), Gaps = 16/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW RQ S+QG++E + + V AGRTD+GVHA QV Sbjct: 19 VRVRLDLAYDGGAFHGWARQPGLDSVQGALEDGLERILRRPVRTVVAGRTDAGVHARGQV 78 Query: 62 AHFDL------------VREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAI 108 H DL L + L L + + F ARFSA+ Sbjct: 79 VHLDLAETEWAGLTRGRPGLEPATSLTRRLGGVLSGWGGAVVVHGARRAPAGFDARFSAL 138 Query: 109 RRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y YRI A +G +LD M + A ++G HDF +F ++ Sbjct: 139 WREYEYRIDDVPAARDPRTRGFTHWHGAALDDRLMALEADAVLGLHDFLSFCRPRA-GAT 197 Query: 168 PIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 IR + H +V + ++ +R+ A +F H +R+ VG+L VG+G L + Sbjct: 198 TIREVQHLEVRRDEDGVVRVRIRADAFCHNMVRAMVGALLQVGEGVREPGWLAHRVARPA 257 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R LAPP GL +V Y Sbjct: 258 RDSEVRLAPPGGLTLLAVGYP 278 >gi|218135248|ref|ZP_03464052.1| hypothetical protein BACPEC_03153 [Bacteroides pectinophilus ATCC 43243] gi|217990633|gb|EEC56644.1| hypothetical protein BACPEC_03153 [Bacteroides pectinophilus ATCC 43243] Length = 196 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 2/178 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q N +I+G + A+ + GE + V GA RTD+GVHAL Sbjct: 1 MRRIKLIVAYDGTKYSGWQVQNNADTIEGRLNAALSSICGENIRVIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD ALNA L + I + V +H R + ++Y Y I+ R Sbjct: 61 IAVFDTESRIPAEKFAYALNARL--PEDIVVQKSCEVPPDYHPRHCSTIKTYEYHILNRT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + + +LD E M AAQ+L+G HDF +F S++ QA + +RTI +V Sbjct: 119 FRLPQMRNNTFFCHYALDLETMNEAAQYLLGEHDFKSFCSVNTQAETTVRTIYSIEVT 176 >gi|283457578|ref|YP_003362161.1| pseudouridylate synthase [Rothia mucilaginosa DY-18] gi|283133576|dbj|BAI64341.1| pseudouridylate synthase [Rothia mucilaginosa DY-18] Length = 348 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 121/279 (43%), Gaps = 35/279 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + Y+GS + GW Q N ++QG IE A+ L+ V AGRTD+GVHA Q Sbjct: 47 RVRIDCAYDGSLFSGWAAQPNLVTVQGVIENALELILRAPHRVVVAGRTDAGVHAEAQTL 106 Query: 63 HF------------DLVREWVPVILCKAL-------------------NAYLKISDTISI 91 H + L + L N + I I Sbjct: 107 HCDLSDEDWTRLQGRTGEDDPTAALGRRLTGALQRCLYDAEEQLNLPKNVRGILQGAIQI 166 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAP--LALEKGRAWLIPKSLDCENMRIAAQHL 149 ++ V F ARFSA R Y+YRI A L + W +P+ LDC ++ +AQ L Sbjct: 167 HRVAEVPFDFDARFSATGRRYVYRIADGAADGLNPLHRTYTWAVPEHLDCADLNESAQQL 226 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLV 208 +G DF +F + ++ IR + + LIE+ VVA +F H +RS VG+L L Sbjct: 227 LGLRDFLSFCKPR-EGATTIRELRELSFTRTESALIEVCVVADAFCHHMVRSLVGALVLY 285 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G GK + L + ++ R+ LAPP L + Y Sbjct: 286 GTGKRDAAWLRERIENPGREASLTLAPPHALALAEIYYP 324 >gi|58696853|ref|ZP_00372372.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila simulans] gi|58536935|gb|EAL60107.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila simulans] Length = 188 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 93/185 (50%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS C A++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQN 179 Query: 181 GNLIE 185 GN I+ Sbjct: 180 GNHIQ 184 >gi|294660547|ref|NP_853358.2| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(low)] gi|298286877|sp|Q7NAQ9|TRUA_MYCGA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|284812210|gb|AAP56926.2| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(low)] gi|284930851|gb|ADC30790.1| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(high)] Length = 263 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 5/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + I Y+G+ + G+ Q + ++Q ++ A+ + + V+ +GRTD GVHA+ Q Sbjct: 24 NVLINISYHGTKFHGYAVQNDYETVQSKLQDALAWIYESKIYVNASGRTDKGVHAINQYI 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + L + LN Y + + I + VD+ FHARFSA ++YLY I A Sbjct: 84 SFYIDDRISLEKLREILNRYGQ--NKWYIKWIKEVDRNFHARFSAKAKTYLYLI-DYCAN 140 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L AW++ LD + A L G H+F +F + +RTI D+ N Sbjct: 141 NPLFYDHAWIVNFQLDFNLIEKAIPILEGTHNFWSFSTADKDKG--LRTIHKIDLKQEDN 198 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I + FL + +R VG+L +G K+ L+ L + AP GLY Sbjct: 199 KVYIYITGDGFLRSMVRMIVGALYNIGIKKYDLNHLKWLLDNPKKGRAITKAPASGLYLY 258 Query: 243 SVEYS 247 V Y Sbjct: 259 EVYYE 263 >gi|288919692|ref|ZP_06414019.1| tRNA pseudouridine synthase A [Frankia sp. EUN1f] gi|288348881|gb|EFC83131.1| tRNA pseudouridine synthase A [Frankia sp. EUN1f] Length = 275 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 113/241 (46%), Gaps = 5/241 (2%) Query: 9 EYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLV 67 Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA+ QVAH DL Sbjct: 15 AYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAIGQVAHVDLP 74 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALE 126 L + LN L + + L+ F ARFSA+ R Y+YRI L Sbjct: 75 TGTPVGGLARRLNGVL--DRAVRVKGLAPAPAGFDARFSALSRRYVYRITDAPFGAEPLR 132 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + P+ LD M AA L+G HDF F + ++ +RT+ DV+ +I Sbjct: 133 RFDTLASPRPLDVPAMAEAALLLLGEHDFAAFCRRR-EGATTVRTLLRLDVSRVEGVILA 191 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V A +F H+ +R+ VG+L VG+G+ L R + P GL V Y Sbjct: 192 DVEADAFCHSMVRALVGALVAVGEGRRRPEWAAAVLGRGVRDSGVTVLPAHGLTLVEVRY 251 Query: 247 S 247 Sbjct: 252 P 252 >gi|325964130|ref|YP_004242036.1| pseudouridylate synthase I [Arthrobacter phenanthrenivorans Sphe3] gi|323470217|gb|ADX73902.1| pseudouridylate synthase I [Arthrobacter phenanthrenivorans Sphe3] Length = 296 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 74/263 (28%), Positives = 116/263 (44%), Gaps = 19/263 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G + GW Q ++QG +E+A+ L+ V V AGRTD+GVHA QV Sbjct: 18 RVRLDLSYDGGPFSGWALQPGLRTVQGVLEEALHLLVRRPVRVTVAGRTDAGVHARGQVV 77 Query: 63 HFD-LVREW----------VPVILCKALNAYL-----KISDTISILNLSIVDKQFHARFS 106 H D EW V + + + L ++ + + + + F ARFS Sbjct: 78 HLDLTEAEWLGLPRGHELDPAVAMLRRIRGALSRILGDLTGAVEVHRIILAPPGFDARFS 137 Query: 107 AIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI A L + LD + + A L+G +F +F + Sbjct: 138 ALWRRYSYRIADGPALWDPLGRYSTLWHKNPLDVDLLNEGASKLLGLQNFLSFCKPR-EG 196 Query: 166 SSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + F+ + + + V A +F H +R+ +GS VG+G L + L A Sbjct: 197 ATTIRELQRFEFTRAEDGVIVATVQADAFCHNMVRALIGSALYVGEGVEEPGWLYERLLA 256 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 Q R LA P L + V Y Sbjct: 257 QKRDAKSVLAAPHPLVLEEVAYP 279 >gi|311258299|ref|XP_003127542.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Sus scrofa] Length = 306 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 129/273 (47%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQ--RQK-NGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G R + +Q +E+A + V + RTD+GVHAL Sbjct: 13 RYLVYFQYLGTDFNGVAAVRGPQHAVGVQNYLEEAAERLNSVVPVKFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR++A R+YL Sbjct: 73 SNAAHLDIQRRSGQPPFSPEVLTEALNTHLRHP-AIRVLQAFRVPSHFHARYAATSRTYL 131 Query: 114 YRIITRQAPL----ALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T E+ R W + LD M+ AAQHL+G HDF+ F+S A+SP Sbjct: 132 YRLATGCPRPDHLSVFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAFQSTGSPATSP 191 Query: 169 IRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V+ + ++SFL+ Q+R L VG G T Sbjct: 192 VRTLRRASVSPEPSSPLVLPGESRGLRFWSLEFESQSFLYRQVRRMTAVLVAVGLGALTP 251 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L+++D + +AP GL+ SV Y Sbjct: 252 AQVKMILESRDPLGRHQSRVAPAHGLFLKSVLY 284 >gi|194334164|ref|YP_002016024.1| tRNA pseudouridine synthase A [Prosthecochloris aestuarii DSM 271] gi|194311982|gb|ACF46377.1| tRNA pseudouridine synthase A [Prosthecochloris aestuarii DSM 271] Length = 237 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 10/242 (4%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MIIEY+G+ + GWQRQ S++QG IE + + E V + GAGRTD GVHA+ Q A F Sbjct: 1 MIIEYDGTDFAGWQRQDGAVSTVQGEIEAVLRRILQEAVSITGAGRTDKGVHAMGQAASF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 LC +LN+ L +I I++L VD FHAR+SA+ R Y Y + RQ A Sbjct: 61 MTGSSMEAGRLCHSLNSLL--PSSIRIMSLIDVDGDFHARYSALSRQYRYML--RQRESA 116 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + + S D + + A L+GRHDF F + T+ + Sbjct: 117 IFRRFSGYDRASHDLDQLNSRASVLLGRHDFKAFSKSGSDTRTTCCTVSEAQWFREKEFL 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 ++ A FL + +R V + +++ ++ AL ++ + A P GL+ + Sbjct: 177 VFQISANRFLRSMVRYLVSATL-----RFSGEEISYALVSRQPIKGLLPADPAGLFLWEI 231 Query: 245 EY 246 Y Sbjct: 232 GY 233 >gi|257126804|ref|YP_003164918.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b] gi|257050743|gb|ACV39927.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b] Length = 251 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 6/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +Y+GS + G+QRQ ++QG IEK I + + + +GRTD GVHA+ QV Sbjct: 4 RNVKIVYQYDGSKFCGFQRQMGIKTVQGEIEKVISKTFFQNINMISSGRTDKGVHAIEQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F + + + + LN LK I IL++ +D++F++RF A R+YLY + Sbjct: 64 SNFMIDQNIPLNAIKRQLNKRLK--GEIKILDIEEMDEKFNSRFDAQNRTYLYIMKVEDE 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E I + +D + + +G+HDF++F +P+R I + Sbjct: 122 ITPFETNYITGIKEMIDIDKFQKIMLEFIGKHDFSSFMKKDKAYRNPVREIFFINCYYDK 181 Query: 182 N----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N I I + FL T +R +GS V GK ++K L+ D LA E Sbjct: 182 NGKEKQINIEICGNGFLKTMVRIMIGSALAVYFGKEEKNYIKKKLENPDADGKKILAGSE 241 Query: 238 GLYFDSVEYS 247 GLY V Y Sbjct: 242 GLYLYKVSYE 251 >gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1] gi|34395892|sp|Q8PWT1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1] Length = 269 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + + Y G+ + G Q Q + +++ + KA+ + + + AGRTD+GVHA Sbjct: 1 MRVALKLAYIGTEFHGSQIQPSVETVEKELFKALRNLRIIESPKSANYICAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD R + + + +N+ L TI + + V F AR A+ R Y Y I Sbjct: 61 LGQVIAFDTDR--PNLAIPRIINSGL--PPTIWVWAHAEVPYDFDARRHAVSRHYRYVIS 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D MR A++ L+G HDF F + + S +RT++ +V Sbjct: 117 ----------------GEGYDISKMREASKLLLGTHDFENFSRSNGE-KSTVRTLERINV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G++ +I VV SFL +R V +L ++G G + L + L +E AP Sbjct: 160 RVDGDITKIDVVGNSFLWNMVRKIVTALSMIGKGVRDNDWLIQMLNPDIYEEGIEPAPAY 219 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 220 GLTLMGVNY 228 >gi|269837096|ref|YP_003319324.1| tRNA pseudouridine synthase A [Sphaerobacter thermophilus DSM 20745] gi|269786359|gb|ACZ38502.1| tRNA pseudouridine synthase A [Sphaerobacter thermophilus DSM 20745] Length = 271 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 84/258 (32%), Positives = 116/258 (44%), Gaps = 17/258 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + + Y+GS +FG QRQ ++QG++E A + GE V AGRTD GVHA+ QVA Sbjct: 10 FRVDLGYDGSAFFGSQRQPGVRTVQGALESAAERLAGEPTRVALAGRTDRGVHAVGQVAS 69 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + L +AL A D + + VD++FHARFSA R Y Y + P Sbjct: 70 LRIRWARSADELARALMAL--TPDDLVVYGAREVDERFHARFSARWREYRYFVWEGPVP- 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS----SPIRTIDHFDVN- 178 L +GR W++ L+ M AA +GR DF RT+ Sbjct: 127 TLMRGRVWVVRTPLNLAAMNAAADAFIGRRDFAAVAGAGVGVPWSGIDTTRTVSLARWRI 186 Query: 179 ---------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 G L+E R+ A FL +R+ VGSL VG G E+ L +DR+ Sbjct: 187 VDQPFERHDRSGRLLEFRIRADGFLPHMVRNIVGSLVAVGRGDRPIGWTEELLAGRDRRR 246 Query: 230 CGPLAPPEGLYFDSVEYS 247 AP +GL V Y Sbjct: 247 GEAPAPAQGLVLWRVAYD 264 >gi|197294307|ref|YP_001798848.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma australiense] gi|171853634|emb|CAM11505.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma australiense] Length = 245 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y G+Q+Q +IQ ++E A+ +T + A RTD GVHA Q H Sbjct: 8 YKLILSYDGTCYCGYQKQPQTKTIQQTLENALKSMTKRQINTFAASRTDKGVHAQEQTIH 67 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F LN L I I + FHAR+ A + Y Y I ++ Sbjct: 68 FQTAFAIELKRFKNTLNRIL--PPDIRIKKIEKATADFHARYWAKSKIYHY-IFAKKPLN 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A + +LD ++ A ++G+++F +F + + + +T+ + V Sbjct: 125 AFNYHFQVFVA-NLDFAKIKSAMNLIIGKYNFASFTNDKKE-KNFNKTVLNAFVKETSQN 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + A FL +R VG L +G K + + L ++ LAP +GL+ Sbjct: 183 YILIFHADGFLKYMVRFLVGGLIEIGKNKMSLELFKAMLTNTTNQKVSLLAPAKGLFLKK 242 Query: 244 VEY 246 + Y Sbjct: 243 IFY 245 >gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro] gi|121729516|sp|Q46CU8|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro] Length = 269 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 25/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + + Y G+ + G Q Q N +++G + KA+ + + + AGRTD+GVHA Sbjct: 1 MRVALKLAYIGTEFHGSQIQPNVETVEGELFKALRNLGIIESPKSANYTCAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD + + + + + +N+ L I + + V F AR A+ R Y Y + Sbjct: 61 LEQVVAFDTDK--LNLAIPRVINSELT--PGIWVWAHAEVPLSFDARRDAVSRHYRYVMS 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 K D +R A++ L+G HDF F + + S +RTI+ D Sbjct: 117 ----------------GKEYDISKIREASKFLLGTHDFENFSRTNGE-KSTVRTIERIDA 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LI+I VV SFL +R V +L ++G G + L + L + +E AP Sbjct: 160 RIDGELIKIDVVGNSFLWNMVRKIVTALSMIGKGVRDTDWLLQMLNPEIYEEGIESAPAY 219 Query: 238 GLYFDSVEYS 247 GL V Y+ Sbjct: 220 GLTLLKVNYN 229 >gi|284931225|gb|ADC31163.1| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. F] Length = 263 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 5/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + I Y+G+ + G+ Q + ++Q ++ A+ + + V+ +GRTD GVHA+ Q Sbjct: 24 NVLINISYHGTKFHGYAVQNDYETVQSKLQDALAWIYESKIYVNASGRTDKGVHAINQYI 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F + L + LN Y + + I + VD+ FHARFSA ++YLY I A Sbjct: 84 SFYIDDRISLEKLREILNRYGQ--NKWYIKWIKEVDRNFHARFSAKAKTYLYLI-DYCAN 140 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L AW++ LD + A L G H+F +F + +RTI+ ++ N Sbjct: 141 NPLFYDHAWIVNFQLDFNLIEKAIPILEGTHNFWSFSTADKDKG--LRTINKINLKQEDN 198 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I + FL + +R VG+L +G K+ L+ L + AP GLY Sbjct: 199 KVYIYITGDGFLRSMVRMIVGALYNIGIKKYDLNHLKWLLDNPKKGRAITKAPASGLYLY 258 Query: 243 SVEYS 247 V Y Sbjct: 259 EVYYE 263 >gi|28493493|ref|NP_787654.1| tRNA pseudouridine synthase A [Tropheryma whipplei str. Twist] gi|28476535|gb|AAO44623.1| pseudouridylate synthase I [Tropheryma whipplei str. Twist] Length = 315 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 52 TRYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVVAARTDAGVHALQQV 111 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I ++ Sbjct: 112 CHVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRS 171 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + L MR AA L+G DF F S +R + F+V Sbjct: 172 SWYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPRRMG-STVRHLRQFEVIRQ 230 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 231 PDGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHAL 290 Query: 240 YFDSVEYS 247 ++Y Sbjct: 291 TLIGIDYP 298 >gi|42559799|sp|Q83G11|TRUA_TROWT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 267 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 4 TRYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVVAARTDAGVHALQQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I ++ Sbjct: 64 CHVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRS 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + L MR AA L+G DF F S +R + F+V Sbjct: 124 SWYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPRRMG-STVRHLRQFEVIRQ 182 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 183 PDGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHAL 242 Query: 240 YFDSVEYS 247 ++Y Sbjct: 243 TLIGIDYP 250 >gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631] gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631] Length = 262 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 25/248 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 +R + Y G+ + G+Q Q N ++ G + KA + + AGRTD+GVHA Sbjct: 1 MRIAYKLAYVGTNFHGFQYQPNVRTVAGELFKAFRALGIDPKKAKFRCAGRTDAGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV ++ + P + NA+L + ++ + VD++F+ R A R+Y+Y + Sbjct: 61 QVIAINVEKPIFP----RMFNAHL--PEDVTFWAWTEVDEKFNPRH-AKSRTYVYVMPAE 113 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 D MR A++ L+G HDF+ F + IRTI + ++ Sbjct: 114 GY----------------DISAMRKASKLLLGTHDFSNFTKKFGERRRCIRTIYNVELRL 157 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + +V +F +R V +L+ VG G + E L + +E AP GL Sbjct: 158 DDGFVVLEIVGNAFTWNMVRCIVSALREVGSGHRSVEWFEDMLNPERHRERIEPAPAYGL 217 Query: 240 YFDSVEYS 247 VEY Sbjct: 218 ILKDVEYE 225 >gi|116671484|ref|YP_832417.1| tRNA pseudouridine synthase A [Arthrobacter sp. FB24] gi|116611593|gb|ABK04317.1| tRNA pseudouridine synthase A [Arthrobacter sp. FB24] Length = 280 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 76/264 (28%), Positives = 117/264 (44%), Gaps = 19/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW Q ++QG +E A+ L+ V V AGRTD+GVHA QV Sbjct: 1 MRIRLDLAYDGGPFSGWAVQPGLRTVQGVLESALALLIRRKVRVTVAGRTDAGVHARGQV 60 Query: 62 AHFD-LVREW----------VPVILCKALNAYL-----KISDTISILNLSIVDKQFHARF 105 H D EW V L + L L ++ I + ++++ + F ARF Sbjct: 61 VHLDLTEEEWQGLNRGVELDPAVALLRRLRGALSRGLGDLTGAIEVHSVTVAPEGFDARF 120 Query: 106 SAIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R Y YRI A L + + LD + A L+G +F ++ + Sbjct: 121 SALWRRYSYRIADGPALWDPLGRYSTLWHKEQLDVSLLNEGASKLLGLQNFRSYCKPR-E 179 Query: 165 ASSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 S+ IR + F+ + + + V A +F H +R+ VGS VG G L + L Sbjct: 180 GSTTIRELQRFEFARGTDGVIVATVQADAFCHNMVRALVGSALYVGSGAEKPGWLYERLL 239 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 Q R L+ P L + V Y Sbjct: 240 EQKRDAKSVLSAPHPLVLEEVAYP 263 >gi|39938715|ref|NP_950481.1| tRNA pseudouridine synthase A [Onion yellows phytoplasma OY-M] gi|42559719|sp|P60351|TRUA_ONYPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39721824|dbj|BAD04314.1| pseudouridylate synthase [Onion yellows phytoplasma OY-M] Length = 243 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y+G+Q+Q ++Q + EKA+ +T + + A RTD GVH+ Q H Sbjct: 6 YKLILSYDGTCYYGYQKQPQKITVQQTFEKALKKMTHQNIPTFAASRTDKGVHSQGQTLH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P K LN L I + ++ FHAR+SA + Y Y + PL Sbjct: 66 FQTTFFLKPTHFQKTLNYLL--PPDIRVRQMNFATPNFHARYSAKSKIYQYVFS--KKPL 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + L + + A + + G H+F F S Q + +TI + + Sbjct: 122 NAFNHHFQIFADKLYFDKITKALKFIEGTHNFFAFTS-ETQPKNFSKTIFQAFLKETSHK 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + FL IR VGSL +G K + + L K+ LAP + L Sbjct: 181 YILVFHGNGFLKYMIRFLVGSLIEIGKNKLSLEQFQAMLLGNTTKKATLLAPSKALVLKK 240 Query: 244 VEY 246 + Y Sbjct: 241 IFY 243 >gi|28572394|ref|NP_789174.1| tRNA pseudouridine synthase A [Tropheryma whipplei TW08/27] gi|42559794|sp|Q820Z2|TRUA_TROW8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28410525|emb|CAD66911.1| tRNA pseudouridine synthase A [Tropheryma whipplei TW08/27] Length = 267 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 4 TRYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVIAARTDAGVHALQQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ- 120 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I ++ Sbjct: 64 CHVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRS 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + L MR AA L+G DF F S +R + F+V Sbjct: 124 SWYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPRRMG-STVRHLRQFEVIRQ 182 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 183 PDGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHAL 242 Query: 240 YFDSVEYS 247 ++Y Sbjct: 243 TLIGIDYP 250 >gi|255326873|ref|ZP_05367949.1| tRNA pseudouridine synthase A [Rothia mucilaginosa ATCC 25296] gi|255296090|gb|EET75431.1| tRNA pseudouridine synthase A [Rothia mucilaginosa ATCC 25296] Length = 321 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 123/279 (44%), Gaps = 35/279 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + Y+GS + GW Q N ++QG+IE A+ L+ V AGRTD+GVHA Q Sbjct: 20 RVRIDCAYDGSLFSGWAAQPNLVTVQGAIENALELILRAPHRVVVAGRTDAGVHAEAQTL 79 Query: 63 HF------------DLVREWVPVILCKAL-------------------NAYLKISDTISI 91 H + L + L N + I I Sbjct: 80 HCDLNDEDWTRLQGRTGEDDPTAALGRRLTGALQRCLYDAEEQLNLPKNVRGILQGAIQI 139 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAP--LALEKGRAWLIPKSLDCENMRIAAQHL 149 +S V +F ARFSA R Y+YRI A L + W +P+ LDC ++ +AQ L Sbjct: 140 HRVSEVSFEFDARFSATGRRYVYRIADGAANGLNPLHRTYTWAVPEHLDCADLNQSAQQL 199 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLV 208 +G DF +F + ++ IR + LIE+RVVA +F H +RS VG+L L Sbjct: 200 LGLRDFLSFCKPR-EGATTIRELRELSFTRTESGLIEVRVVADAFCHHMVRSLVGALVLY 258 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G GK + L + ++ R+ LAPP L + Y Sbjct: 259 GTGKRDAAWLRERIENPGREASLTLAPPHALALAEIYYP 297 >gi|76637689|ref|XP_875031.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus] gi|297484219|ref|XP_002694181.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus] gi|296479092|gb|DAA21207.1| pseudouridylate synthase-like 1 [Bos taurus] Length = 303 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 128/277 (46%), Gaps = 36/277 (12%) Query: 3 RYCMIIEYNGSGY------FGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGV 55 RY + +Y G+ + G QR +Q +E+A + V + RTD+GV Sbjct: 9 RYLVYFQYLGTDFNGVAAVRGVQR---AVGVQNYLEEAAERLNSVMPVKFTISSRTDAGV 65 Query: 56 HALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HAL AH D+ R + P +L +ALN +LK I +L V FHAR +AI R Sbjct: 66 HALSNAAHLDIQRRSDLPPFSPEVLTEALNTHLKHP-AIRVLQAFRVPSHFHARHAAISR 124 Query: 111 SYLYRIITRQAPL----ALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 +YLYR+ T E+ R W + LD M+ AAQHL+G HDF+ F+S A Sbjct: 125 TYLYRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPA 184 Query: 166 SSPIRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 SSP+RT+ V+ + ++SFL+ Q+R L VG G Sbjct: 185 SSPVRTLRRASVSPDPASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGA 244 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEYS 247 ++ L+++D K +AP GL+ SV Y Sbjct: 245 LMPAQVKAILESRDPLGKHQSRVAPAHGLFLKSVLYE 281 >gi|296274435|ref|YP_003657066.1| tRNA pseudouridine synthase A [Arcobacter nitrofigilis DSM 7299] gi|296098609|gb|ADG94559.1| tRNA pseudouridine synthase A [Arcobacter nitrofigilis DSM 7299] Length = 240 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + M I Y+G Y G QRQ N S++ + + F + + +GRTD VHA QV Sbjct: 1 MNVKMTISYDGFSYQGSQRQTNKKSVEDRLIEV-FKILNIEPKITLSGRTDKQVHATGQV 59 Query: 62 AHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + + W L + +N L +I I + V+ +FHARF A +R Y Y I T++ Sbjct: 60 FNIVIPAYWSNFLKLKQVMNYKL--PSSIRIRKIQKVNDEFHARFHAKKRVYRYVISTKE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + K ++ E ++ A + +G HDF F + + +R I + Sbjct: 118 V-SPFLANYVTFV-KEINEEKIKEAIKLFIGVHDFEYFHKSGSEKDNKVREIFDAKFYKY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + R A S+L +QIR VG L + +GK + DL+ L ++++ A P GLY Sbjct: 176 KDFYIFRFEANSYLRSQIRIMVGFLLKISEGKLSKNDLKAQL-SREKYIYKTPALPNGLY 234 Query: 241 FDSVEY 246 V+Y Sbjct: 235 LSQVKY 240 >gi|24212680|sp|Q9X796|TRUA_MYCLE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 286 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 75/259 (28%), Positives = 118/259 (45%), Gaps = 15/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A V V + AGRTD+GVHA QV Sbjct: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAG-LDEAFTTVFRTPVRLRAAGRTDTGVHATGQV 69 Query: 62 AHFDLV------------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ P L + + +L+++ F ARFSA+R Sbjct: 70 AHVDIPGTALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVRVLDIACAPVGFDARFSALR 129 Query: 110 RSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+ T + + P+ LD ++M A++ L+G DF F H ++ Sbjct: 130 RHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDLLGLRDFAVFCR-HRHGATT 188 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + + + G LI + A +F + +RS +G+L VGD + T + L R Sbjct: 189 IRELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRS 248 Query: 229 ECGPLAPPEGLYFDSVEYS 247 AP GL F V+Y Sbjct: 249 SDFTTAPAHGLTFIRVDYP 267 >gi|291457231|ref|ZP_06596621.1| tRNA pseudouridine synthase A [Bifidobacterium breve DSM 20213] gi|291381066|gb|EFE88584.1| tRNA pseudouridine synthase A [Bifidobacterium breve DSM 20213] Length = 303 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 42/287 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPELRTVQGTIEDALHKVLRVPVGDEREPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + V L +AL LK + I I ++I + F AR Sbjct: 61 GVHASHQVAHLDVSDETLARCQGHMDVPLTEALARRLKAVLPADIVIHGIAIAPQGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + +G + +SLD + M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLRVDESLDLDAMNAAAAMTIGLHDFGSFATPNP 180 Query: 164 QASSPIRTIDHFDVNSFG----------------------NLIEIRVVARSFLHTQIRSF 201 + IR + L+ +VA +F +RS Sbjct: 181 -GGTTIREVKTAYWRRVPVASLVPDVLAENEAYRTPSLESGLVVFTIVADAFARNMVRSL 239 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VGS VG G+ T + R+ GP+AP +GL + +EY Sbjct: 240 VGSSIKVGSGRKTLEWFADKMANPVREGSSGPIAP-QGLTLEHIEYP 285 >gi|282933805|ref|ZP_06339157.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] gi|281302070|gb|EFA94320.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] Length = 223 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 69/211 (32%), Positives = 106/211 (50%), Gaps = 5/211 (2%) Query: 40 GEIVVVHGAGRTDSGVHALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVD 98 G+ +VVHG+GRTD+GVHAL QV HFD + ALN+ + I + IV+ Sbjct: 2 GQRIVVHGSGRTDAGVHALGQVIHFDFPNDNIPANRMVLALNSMM--PTDIIFKDAEIVN 59 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + FH ++S + Y Y + + ++ P L+ M+ AA L+G HDFT+F Sbjct: 60 EDFHVQYSTHGKWYRYIVNQDRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSF 119 Query: 159 RSIHCQASSPIRTIDHFDV--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + Q +RTI + + S N I + FL+ +R VG+L +G+ + Sbjct: 120 AASGGQIIDKVRTIYYVKIWQKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVH 179 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 DL++ + A+DR+E AP GLY V Y Sbjct: 180 DLKRVILAKDRQEVINTAPASGLYLYHVFYE 210 >gi|242398608|ref|YP_002994032.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739] gi|259550478|sp|C6A238|TRUA_THESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|242265001|gb|ACS89683.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739] Length = 266 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 27/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVHA 57 +R + I Y+G+ ++G+QRQ + +++G + K + + + GA RTD GV A Sbjct: 1 MRIALKIAYDGTKFYGFQRQPDLRTVEGELIKVLKKLGIIEDVKEANFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L V F+ + + + LN +L+ I IL + V + FH RF A + Y Y Sbjct: 61 LGNVIAFNTAKPELAEA--RILNHHLR---DIWILGKAEVPEDFHPRFWAKNKIYRY--- 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +L + +D ++ A+ +GRHDF+ F + + P+R I+ DV Sbjct: 113 -------------YLFDEGIDVIKLKACAEAFLGRHDFSNFARLE-EFRKPVREINRIDV 158 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S G +I + + +SFL R + +LKL G G + D+E L+ + K+ P APPE Sbjct: 159 FSRGRIIVVEIEGKSFLWEMTRRIITALKLCGLGVLSIGDVELMLKEKVDKKL-PPAPPE 217 Query: 238 GLYFDSVEYS 247 L V Y Sbjct: 218 NLVLWEVGYE 227 >gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A] gi|30913395|sp|Q8TU65|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A] Length = 269 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHA 57 +R + + Y G+ + G Q Q N +++ + KA+ ++ + AGRTD+GVHA Sbjct: 1 MRVALKLAYIGTEFHGSQIQPNVETVEKELFKALRNLSIIESPKSADYTCAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD + + + + +N+ L I + V F AR SA+ R Y Y + Sbjct: 61 LGQVVAFDTEK--PNLAIPRVINSEL--PPAIWAWAHAEVPYYFDARRSAVSRHYHYVMS 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D MR A++ L+G HDF F + + S +RT++ +V Sbjct: 117 ----------------GEDYDISKMREASKLLLGTHDFENFSRSNGE-KSTVRTLERINV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + +I VV SFL +R V +L ++G+G + L + L + +E APP Sbjct: 160 RVDGEITKIDVVGNSFLWNMVRKIVTALSMIGNGVRDNDWLLQMLNPEIYEEGIEPAPPY 219 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 220 GLTLMGVNY 228 >gi|301167543|emb|CBW27126.1| putative tRNA pseudouridine synthase [Bacteriovorax marinus SJ] Length = 267 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 117/248 (47%), Gaps = 17/248 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVR 68 YNG YFGWQ+QKN +IQ +IE A+ ++ E + G+ RTD+GVH+ V + Sbjct: 11 YNGENYFGWQKQKNFKTIQDTIEDALRVIAPSEKIRTMGSSRTDTGVHSRANVCFIQIQE 70 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + P L K LN L + I I + F + A R+ YLY + + Sbjct: 71 DLEPHELTKKLNQEL--PNDIRITKCERTYRHFKVVYFAKRKQYLYIFKINNS----DHS 124 Query: 129 RAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE-- 185 + I ++LD E M+ AA+ +G HDF F + R I + + I Sbjct: 125 TFYHSIEENLDIEKMKEAAKVFIGTHDFRNFCHKVSENVDKKREIFECKIIEDQDFISEN 184 Query: 186 -------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + FL +R +GSL +G GK T + +++AL + + K+ G +AP G Sbjct: 185 NCHGSYALVIEGSGFLKQMVRIIMGSLINIGLGKTTLSQIQEALVSTEFKKTGFIAPGGG 244 Query: 239 LYFDSVEY 246 LY + +E+ Sbjct: 245 LYLNEIEF 252 >gi|325191328|emb|CCA26111.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 289 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 124/265 (46%), Gaps = 23/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 II Y+G+ Y G+Q Q + ++Q +IE AIF TGE V + RTD GVHA QV Sbjct: 27 VKCIIAYDGTDYNGFQAQGKEGTITLQEAIEDAIFRTTGEAVRIRACSRTDRGVHARGQV 86 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD---KQFHARFSAIRRSYLYRIIT 118 FD + L ALN+ L D I+ L + + + R +I + Y YRI++ Sbjct: 87 IVFDTLCTADAEKLRDALNSRL--DDAIACLQVVPLSISSDRMDPRKLSIGKEYEYRIVS 144 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG--RHDFTTFRSIHCQAS---SPIRTID 173 E+ + W + + +D ++M+ AAQ L + D+ +F A T+ Sbjct: 145 GGVRPVHERFQVWFVRQLVDIKSMKQAAQLLFHREKRDYASFSGERDDAKEGTDTFCTLH 204 Query: 174 HFDVN-----------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 D+ + I IR+ FL+ +R+ VG+L VG GK + + L Sbjct: 205 ALDITMDQPRQEVMNHGQQSCIRIRMSGDRFLYKMVRNIVGTLVDVGLGKIDALSIPDIL 264 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 A+DR++ G AP +GL V +S Sbjct: 265 LARDRRQAGQGAPAKGLTLVRVYFS 289 >gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304] gi|3915163|sp|O28544|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM 4304] Length = 265 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 23/247 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+++ I Y G + G Q Q + +++G + A+ + E + AGRTD+GVHA Q Sbjct: 1 MMKFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRLGVENPRLRSAGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + P + LNA L + I+ + V + F R A R Y Y + Sbjct: 61 VISFYSEDKIFP----RMLNAEL--PEDITAWAWAKVSEDFDPR-RAKSRVYTYVMYGSD 113 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 D MR A + L+G HDF+ F + S +R I D+ + Sbjct: 114 Y----------------DISAMRKAVKELIGVHDFSNFTKKFGEGESCVREIISADIRAD 157 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +F +R V ++ +G + L + KE APP GL Sbjct: 158 REFIIFEIEGNAFTWNMVRCIVTAIMEIGKQHRSIEWFRDLLNPEKHKERVEPAPPYGLI 217 Query: 241 FDSVEYS 247 V+Y Sbjct: 218 LKDVKYD 224 >gi|225010595|ref|ZP_03701066.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] gi|225005424|gb|EEG43375.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] Length = 218 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 4/216 (1%) Query: 32 EKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 E+A L+ + + GAGRTD+GVHA + VAHFD + I+ LNA+L ISI Sbjct: 2 EQAFSLLLATPIELMGAGRTDAGVHAKKMVAHFDTELGFDKQIIKDRLNAFLAA--DISI 59 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + V ++ HARF+A R+Y Y ++ ++ + A + + LD ++M AAQ L+G Sbjct: 60 DQILAVTQETHARFTATSRTYEYIVVNQK--DPFQHHGAHYVFQPLDIQSMNKAAQILLG 117 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 DF F + + I I H + + + A FL +R+ VG+L +G G Sbjct: 118 EKDFECFSKSNSDVHTFICDITHAKWVATKGQLVFTITANRFLRNMVRAIVGTLLEIGTG 177 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 K TD+ L+ + R + GP P +GLY + Y Sbjct: 178 KRPVTDIPLLLETKSRSKAGPSVPAKGLYLTQINYP 213 >gi|281202734|gb|EFA76936.1| hypothetical protein PPL_09688 [Polysphondylium pallidum PN500] Length = 275 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 133/276 (48%), Gaps = 47/276 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +Q +E+++ + + V + G+ RTD+GV+AL Q Sbjct: 1 MTRYRIK-----------------KPVQQVLEESLEVFIRKKVRLVGSSRTDTGVNALHQ 43 Query: 61 VAHFDLV----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 VAHFD+ P ++ ALN ++ + +++ IVD FH+RFSA R Sbjct: 44 VAHFDVDTRISKTGEEIDMMPPEVITMALNQNVQGYP-VRVISTEIVDDSFHSRFSAKSR 102 Query: 111 SYLYRIITRQAPL--ALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 +YLYR++ E K R W + LD M+ AA L GRH+F +FRS CQA + Sbjct: 103 TYLYRMLGGMHRNQAPFELKDRVWAVTNQLDVPKMQEAATLLCGRHNFNSFRSSKCQADN 162 Query: 168 PIRTIDHFDVNS----------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 P+RTI F V LI I V AR+FLH Q+R V +L+ VG Sbjct: 163 PVRTISSFQVFDLPNPDIWQYNSAPLGVNPQLIGIEVKARAFLHNQVRIMVSTLERVGSH 222 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + L++ + A+DR++ P APP L V Y Sbjct: 223 QMSLDQLQELIDAKDRQKAPPTAPPYPLTLTKVSYE 258 >gi|330470142|ref|YP_004407885.1| tRNA-pseudouridine synthase i [Verrucosispora maris AB-18-032] gi|328813113|gb|AEB47285.1| tRNA-pseudouridine synthase i [Verrucosispora maris AB-18-032] Length = 276 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 110/251 (43%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q + ++ G + + + LV G + AGRTD+GVHA Sbjct: 5 VRLRLDVAYDGTDFSGWAAQPDRRTVAGVLVQTLDLVLGAGTATGLTVAGRTDAGVHASG 64 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPVEVWREHEGRLLRRLARLLPGDVRVRAMTEVPATFDARFSATFRRYEYRVTD 124 Query: 119 RQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + P+ LD + + A+ LVG HDF + + ++ +R + D Sbjct: 125 APWGAEPLRRHEVLAWPRPLDTDRLAAASAGLVGEHDFAAYCRRK-ENATTLREVTRLDW 183 Query: 178 NSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I V A +F +RS VG++ + GDG+ L ++R +AP Sbjct: 184 RRDPDGILVATVQADAFCQAMVRSLVGAMLVAGDGRRPVEWPAGLLTRRERSSEVTVAPA 243 Query: 237 EGLYFDSVEYS 247 GL +V Y Sbjct: 244 HGLTLVAVGYP 254 >gi|256420466|ref|YP_003121119.1| tRNA pseudouridine synthase A [Chitinophaga pinensis DSM 2588] gi|256035374|gb|ACU58918.1| tRNA pseudouridine synthase A [Chitinophaga pinensis DSM 2588] Length = 250 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ + G+Q Q N ++Q I+ AI + +V G+ RTD+GVHA + Sbjct: 1 MRYFIEVAYKGTSFGGFQIQDNVETVQSVIDHAISTLMRGAIVTTGSSRTDAGVHARQNF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + P L K +NA L + + N+ V H+RF+A+ RSY Y + + Sbjct: 61 LHFDMEQPLHPQFLYK-VNAIL--PPDVVMRNIYRVADDAHSRFAALSRSYEYTLYMEK- 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + R + P +L E + AA L +F TF + Q + I + Sbjct: 117 -DPFMRDRGYFFPYTLHPELLHEAASVLREYENFMTFSKRNTQVKTYNCNIMSSEWEVGE 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I RV A FL +R VG++ VG GK T +A+++++ PP+GL+ Sbjct: 176 DRIVYRVTANRFLRGMVRGMVGTMLRVGRGKLTMDGFREAIESRNCVNADFAVPPQGLFL 235 Query: 242 DSVEYS 247 V Y Sbjct: 236 MKVAYP 241 >gi|23503259|ref|NP_699170.1| tRNA pseudouridine synthase-like 1 [Homo sapiens] gi|52783232|sp|Q8N0Z8|PUSL1_HUMAN RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|21706547|gb|AAH34304.1| Pseudouridylate synthase-like 1 [Homo sapiens] gi|22761287|dbj|BAC11527.1| unnamed protein product [Homo sapiens] gi|56204950|emb|CAI23172.1| pseudouridylate synthase-like 1 [Homo sapiens] gi|119576649|gb|EAW56245.1| pseudouridylate synthase-like 1 [Homo sapiens] Length = 303 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 125/273 (45%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + +Q +E+A + E V + RTD+GVHAL Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR +A R+YL Sbjct: 73 SNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHP-AIRVLRAFRVPSDFHARHAATSRTYL 131 Query: 114 YRIITRQAP----LALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T E+ W +P LD M+ AAQHL+G HDF+ F+S SP Sbjct: 132 YRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSP 191 Query: 169 IRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V+ + ++SFL+ Q+R L VG G Sbjct: 192 VRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALAP 251 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K +AP GL+ SV Y Sbjct: 252 AQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 284 >gi|269124177|ref|YP_003306754.1| tRNA pseudouridine synthase A [Streptobacillus moniliformis DSM 12112] gi|268315503|gb|ACZ01877.1| tRNA pseudouridine synthase A [Streptobacillus moniliformis DSM 12112] Length = 244 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +I +Y+GS ++G QRQK+ ++QG+IE + E V + +GRTD GVHA Q Sbjct: 1 MNNIKIIYQYDGSAFYGSQRQKDKVTVQGTIEDILINSFNEKVNMISSGRTDRGVHAKMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F + ++ I+ + Y + I IL++ VD ++++RF + R+Y + + R+ Sbjct: 61 VSNFIINKDIKLDIIKSKIEKY--SNYAIKILSIEKVDIKYNSRFDCMERTYEFILSNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNS 179 + I +D E + + +G+H+F+ F +A +PIR I Sbjct: 119 NITPFNRKYITSINYEIDVEKLNDILKQFIGKHNFSNFSKKENKANKNPIREIYECYSIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + SFL + +R +G+ + GK + +++A + + GL Sbjct: 179 KDKNIHIYIKGNSFLKSMVRIIIGTTLAIYSGKISKHFIKEAFDNPNPNTKKYILDGNGL 238 Query: 240 YFDSVE 245 Y V+ Sbjct: 239 YLYHVK 244 >gi|312150754|gb|ADQ31889.1| pseudouridylate synthase-like 1 [synthetic construct] Length = 303 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 125/273 (45%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + +Q +E+A + E V + RTD+GVHAL Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR +A R+YL Sbjct: 73 SNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHP-AIRVLRAFRVPSDFHARHAATSRTYL 131 Query: 114 YRIITRQAP----LALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T E+ W +P LD M+ AAQHL+G HDF+ F+S SP Sbjct: 132 YRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSP 191 Query: 169 IRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V+ + ++SFL+ Q+R L VG G Sbjct: 192 VRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALAP 251 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K +AP GL+ SV Y Sbjct: 252 AQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 284 >gi|317483422|ref|ZP_07942412.1| tRNA pseudouridine synthase A [Bifidobacterium sp. 12_1_47BFAA] gi|316915108|gb|EFV36540.1| tRNA pseudouridine synthase A [Bifidobacterium sp. 12_1_47BFAA] Length = 303 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 42/287 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + +G + ++LD E M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 164 QASSPIRTIDHFDVNSFG----------------------NLIEIRVVARSFLHTQIRSF 201 + IR + L+ +VA +F +RS Sbjct: 181 -GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSL 239 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VGS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 240 VGSCIKVGSGRKSLEWFADKMAEPVREGSSGPIAP-QGLTLEHIAYP 285 >gi|12045035|ref|NP_072845.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|255660331|ref|ZP_05405740.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|1351308|sp|P47428|TRUA_MYCGE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3844778|gb|AAC71401.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|166078658|gb|ABY79276.1| tRNA pseudouridine synthase A [synthetic Mycoplasma genitalium JCVI-1.0] Length = 244 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 116/248 (46%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ Y+GS + GW Q N ++IQG +E++ L+ G + V G+GRTD GVHA+ Q Sbjct: 1 MARYLGIVSYDGSYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H D+ E +L + +N L I + L +V+ FHARF + Y Y I Sbjct: 61 TFHVDINGEINLNLLIRKINQ-LIKPHCI-VKTLVLVNDSFHARFQVKTKVYEYLINCGN 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L+ W + + LD E ++ A +G+ +F +F S + IRTI + Sbjct: 119 L-NPLQFNYVWQLNQQLDLEKLKADATLFLGKKNFLSFSS--SIHTDSIRTISKITIQKE 175 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L+ + FL +Q+R V L + K + K + + C AP GL Sbjct: 176 TNQLVRLTFFGSGFLRSQVRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCGL 235 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 236 YLKTVVYE 243 >gi|251772807|gb|EES53368.1| Pseudouridylate synthase [Leptospirillum ferrodiazotrophum] Length = 294 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 9/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+G + GWQ Q N ++QG++ +A+ + V V G+GRTD+GV A QV Sbjct: 12 RRIALLLAYDGRDFSGWQVQPNRWTVQGTLGEALATLCRAPVGVTGSGRTDAGVSAWGQV 71 Query: 62 AHFDLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AH DL L + LN L ++ +L+ V FHAR SA + Y Y Sbjct: 72 AHADLPEGFSIPVDRLPRILNTRL--PGSLRVLDCRSVSSSFHARHSARGKIYRYVFRHL 129 Query: 120 QA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A L + +P + R A+ +G HDF F R ID Sbjct: 130 PASLSHHPLATPFSAPLPPNFFLPRAREASTFFLGTHDFRHFSVASSLPDDSTRRIDGIL 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLA 234 + + V FLH +R G L G+G+ ++ L+ A Sbjct: 190 WEERCAELILWVTGPGFLHKMVRMIGGYLLEAGEGRRPLEEIPALLRKGAPPPFRAVEPL 249 Query: 235 PPEGLYFDSVEYS 247 PP+GL V Y Sbjct: 250 PPDGLALARVLYD 262 >gi|83409929|emb|CAI64350.1| tRNA pseudouridine synthase A [uncultured archaeon] Length = 276 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 25/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + I Y G+ Y G+Q Q + +I+ + + + + + G+GRTD+GV+A Sbjct: 1 MRIALKIAYIGTEYHGYQIQPDVPTIEKELFRTLEELKIITDPKSARYIGSGRTDAGVNA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV F+ + + + +N+ L +I + + + V F R A+ R Y Y + Sbjct: 61 LGQVVAFNTDN--PKLAIPRVINSKL--PPSIWVWSRAEVPDDFDPRRHAVSREYKYFV- 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + L+ +R A++ L G HDF F + S +RT++ D+ Sbjct: 116 ---------------CGECLNISLLRKASKLLRGTHDFANFATPDMD-KSTVRTVERIDI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LI + + A SF+ +R V +L++VGD L++ L + +E AP Sbjct: 160 RVEGRLINLDIKADSFVWHMVRKIVTALRMVGDQTREVEWLKRMLHPDEFEEGLEPAPAC 219 Query: 238 GLYFDSVEYS 247 GL +V Y Sbjct: 220 GLLLKNVNYD 229 >gi|124516114|gb|EAY57622.1| Pseudouridylate synthase [Leptospirillum rubarum] Length = 268 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 118/253 (46%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+G G+ GWQ Q G+++Q IE+A +T + V + G+GRTD+GV A Q Sbjct: 1 MPRFAFVVSYDGRGFQGWQSQIRGNAVQDHIEEAFCRLTRQDVRISGSGRTDTGVSAAGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI--I 117 V H D+ W P L + LN +L S I IL + V FHAR +R+ Y YR + Sbjct: 61 VFHCDIAGPGWTPDSLSRGLNHFL--SPAIRILQAAAVAPDFHARHDVVRKIYRYRWVSL 118 Query: 118 TRQAP--LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +R+A E + +D ++ A + L G +DFT F R+ID Sbjct: 119 SRKAREVPPTEDPFCGIFFPPVDWTLLQQATKLLEGANDFTRFTVQKSCPEDARRSIDAI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPL 233 + N +++ V R FLH IR +L G K T + L Sbjct: 179 QWIAGPNTLDLWVAGRGFLHMMIRYLAMALLETGQQKRTLKSFQDLLLPGSLPPVPALHP 238 Query: 234 APPEGLYFDSVEY 246 APP+GL V Y Sbjct: 239 APPQGLSLMRVFY 251 >gi|320459238|dbj|BAJ69859.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 303 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 131/287 (45%), Gaps = 42/287 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPAGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + +G + +SLD E M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEIDPRLRGCVLTVDESLDLELMNRAAALTIGLHDFGSFATPNP 180 Query: 164 QASSPIRTIDHFDVNSFG----------------------NLIEIRVVARSFLHTQIRSF 201 + IR + L+ +VA +F +RS Sbjct: 181 -GGTTIREVKTAYWRRVPITPLVPDAMASHEAYRTPSLESGLVVFTIVADAFARNMVRSL 239 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VGS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 240 VGSCIKVGSGRKSLEWFAGKMADPVREGSSGPIAP-QGLTLEHIAYP 285 >gi|225351017|ref|ZP_03742040.1| hypothetical protein BIFPSEUDO_02599 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158473|gb|EEG71715.1| hypothetical protein BIFPSEUDO_02599 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 331 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 46/288 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +R + + Y+G+ ++GW +Q + ++QG IE+ + + E + + AGRTD+G Sbjct: 30 VRLRIDLAYDGTDFYGWAKQPDIRTVQGEIERVLHTILRVPEGDDNEPLRLTVAGRTDTG 89 Query: 55 VHALRQVAHFDLVRE-----------WVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 VHA QV H D+ E + L + L L + I+I ++ + F A Sbjct: 90 VHASHQVCHLDINEETLARCVGHMQVEPVMALTRRLQRML--PNDIAIRSIKEAPEGFDA 147 Query: 104 RFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R+Y+YRI R + + I +LD M AA+ +G HDF +F + + Sbjct: 148 RFSALERTYVYRIADRSSEIDPRTRNSVLHIDDNLDIGAMNKAAEMTIGLHDFGSFATPN 207 Query: 163 CQASSPIRTIDHFDVNSFGN----------------------LIEIRVVARSFLHTQIRS 200 + IR + L+ +VA +F +RS Sbjct: 208 P-GGTTIREVKTAYWRRIPQHPLIDDGTTMGERYRTPALESGLLCFTIVADAFARNMVRS 266 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 V VG GK + + R+ GP+AP +GL + +EY Sbjct: 267 LVNGCVQVGIGKRSLDWFAGKMATPLREGSTGPIAP-QGLTLEHIEYP 313 >gi|152990852|ref|YP_001356574.1| tRNA pseudouridine synthase A [Nitratiruptor sp. SB155-2] gi|151422713|dbj|BAF70217.1| tRNA pseudouridine synthase A [Nitratiruptor sp. SB155-2] Length = 241 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 115/247 (46%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R +I Y+GS + G+Q QK+ +++ + A+ V E + G+GRTD GVHA Q Sbjct: 1 MRIKAVISYDGSRFDGFQIQKHTANTVMHHLYNALQRVGIES-KIVGSGRTDKGVHATAQ 59 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFDL W L LN L+ I I + V K+FHAR+SA RR+Y Y + Sbjct: 60 VIHFDLPPFWSELERLQNLLNESLR--PYIQIKRVVKVPKEFHARYSAKRRAYRYLLKKS 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P E + +LD E ++ GRHDF F S +R I + Sbjct: 118 E-PSVFENAYLHHVS-NLDIEIIKRNISLFEGRHDFRYFMKTGSDTKSSVRRIFKTALYE 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +L + FL QIR VG+L +G G+ + L + R LAPP GL Sbjct: 176 KDDLYVLYFEGDGFLRAQIRLIVGALIKLGKGELKPEQIIDQLACKAR-YTSTLAPPNGL 234 Query: 240 YFDSVEY 246 Y + Y Sbjct: 235 YLCKIIY 241 >gi|296206475|ref|XP_002750239.1| PREDICTED: tRNA pseudouridine synthase-like 1-like, partial [Callithrix jacchus] Length = 301 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 126/273 (46%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + ++Y G+ + G + +Q +E+A + E V + RTD+GVHAL Sbjct: 11 RYLVYLQYVGTDFNGVAAVRGAQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 70 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR +A R+YL Sbjct: 71 SNAAHLDVQRRSGRPPFPPEVLTEALNTHLRHP-AIRVLRAFRVPSDFHARHAATSRTYL 129 Query: 114 YRIITRQAP----LALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR++T E+ W + LD M+ AAQHL+G HDF+ F+S SP Sbjct: 130 YRLVTGCHRSDELPVFERNLCWALRADRLDVAAMQEAAQHLLGTHDFSAFQSAGSPVPSP 189 Query: 169 IRTIDHFDV-------------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V + + ++SFL+ Q+R L VG G Sbjct: 190 VRTLRRVSVSPGLTSPLVTPQESRKLQFWSLEFESQSFLYRQVRRMTAVLVAVGLGALAP 249 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K LAP GL+ SV Y Sbjct: 250 AQVKTILESQDPLGKHQTRLAPAHGLFLKSVVY 282 >gi|213693060|ref|YP_002323646.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524521|gb|ACJ53268.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 305 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 131/287 (45%), Gaps = 42/287 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 3 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 62 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 63 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPAGFDAR 122 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + +G + +SLD E M AA +G HDF +F + + Sbjct: 123 FSALERTYVYRVADRSSEIDPRLRGCVLTVDESLDLELMNRAAALTIGLHDFGSFATPNP 182 Query: 164 QASSPIRTIDHFDVNSFG----------------------NLIEIRVVARSFLHTQIRSF 201 + IR + L+ +VA +F +RS Sbjct: 183 -GGTTIREVKTAYWRRVPITPLVPDAMASHEAYRTPSLESGLVVFTIVADAFARNMVRSL 241 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VGS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 242 VGSCIKVGSGRKSLEWFAGKMADPVREGSSGPIAP-QGLTLEHIAYP 287 >gi|212716584|ref|ZP_03324712.1| hypothetical protein BIFCAT_01513 [Bifidobacterium catenulatum DSM 16992] gi|212660288|gb|EEB20863.1| hypothetical protein BIFCAT_01513 [Bifidobacterium catenulatum DSM 16992] Length = 306 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 46/288 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +R + + Y+G+ ++GW +Q + ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTDFYGWAKQPDMRTVQGEIERVLHTILRVPEGDDNEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHFDLVRE-----------WVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 VHA QV H D+ E + L + L L + I+I ++ + F A Sbjct: 65 VHASHQVCHLDINEETLARCVGHMQVEPVMALTRRLQRML--PNDIAIHSIKEAPEGFDA 122 Query: 104 RFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R+Y+YRI R + + I +LD M AA+ +G HDF +F + + Sbjct: 123 RFSALERTYVYRIADRSSEIDPRTRNSVLHIDDNLDIAVMNKAAEMTIGLHDFGSFATPN 182 Query: 163 CQASSPIRTIDHFDVNSFGN----------------------LIEIRVVARSFLHTQIRS 200 + IR + L+ +VA +F +RS Sbjct: 183 P-GGTTIREVKTAYWRRIPQHPLIDDGTTMGERYRTPALESGLLCFTIVADAFARNMVRS 241 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 V VG GK + + R+ GP+AP +GL + +EY Sbjct: 242 LVNGCVQVGIGKRSLDWFAGKMATPLREGSTGPIAP-QGLTLEHIEYP 288 >gi|294786442|ref|ZP_06751696.1| tRNA pseudouridine synthase A [Parascardovia denticolens F0305] gi|315226006|ref|ZP_07867794.1| tRNA pseudouridine synthase A [Parascardovia denticolens DSM 10105] gi|294485275|gb|EFG32909.1| tRNA pseudouridine synthase A [Parascardovia denticolens F0305] gi|315120138|gb|EFT83270.1| tRNA pseudouridine synthase A [Parascardovia denticolens DSM 10105] Length = 338 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 115/320 (35%), Gaps = 75/320 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--------GEIVVVHGAGRTDS 53 +R + Y+G+ + GW RQ ++QG +E I V G + + AGRTD+ Sbjct: 1 MRLRIDCSYDGTAFHGWARQPGQRTVQGELEATIAKVLHLWKPDDDGHPITLVVAGRTDA 60 Query: 54 GVHALRQVAHFDLVR--------EWVPVILC--KALNAYLK--ISDTISILNLSIVDKQF 101 GVHA QV H DL P +AL L+ + IS+ ++ F Sbjct: 61 GVHASGQVCHLDLEDEVLSVAMGHLDPATYRPWEALAYRLRRILPADISVRSIFPSPAGF 120 Query: 102 HARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 ARFSA R Y+YR+ A +G +P+ LD + M AAQ LVG HDF +F S Sbjct: 121 DARFSASDRVYVYRVADESSAYDPRLRGFVLNLPRRLDLDLMNQAAQSLVGLHDFGSFSS 180 Query: 161 IHCQASSPIRTIDHFDVNSFG--------------------------------------- 181 + + IR + Sbjct: 181 PNP-GGTTIREVKFARWERVPTHPLGSSSYAGGASLSPTQAIGADPSAAGSISGFESCSG 239 Query: 182 --------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 L+ ++A +F +RS V + VG GK L R Sbjct: 240 SNPDSPYRVDSVESGLLIFTIIADAFAKNMVRSLVNACLQVGMGKKGLDWFAGKLAHPVR 299 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + AP GL + V Y Sbjct: 300 EGASGPAPACGLTLEKVNYP 319 >gi|260891283|ref|ZP_05902546.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] gi|260858959|gb|EEX73459.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] Length = 250 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 MI +Y+GS + G+QRQK ++QG IE+A+F + + + +GRTD GVHA+ QV Sbjct: 4 RNLKMIYQYDGSKFCGFQRQKKMKTVQGEIERAVFKTFNQEINMISSGRTDKGVHAMEQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F + + + +N LK + +L + K F+ARF A R+YLY + + Sbjct: 64 SNFVIDENIPIEAIKRQINKCLK--GEVKVLEVEEAGKDFNARFDAKSRTYLYIMRNEED 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + S+ E + VG++DF++F +P+R I + Sbjct: 122 ITPFEANYVTGLRASVSVEKFQEIMNDFVGKYDFSSFMKKDKAYRNPVREIVYIKCYYDE 181 Query: 182 NL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + + FL T +R +GS V G +++ L+ + + LA E Sbjct: 182 KIGQKQLNVEICGNGFLKTMVRIMIGSALAVYFGNVEEDYIKRRLENPNADDKKILAASE 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLYKVNY 250 >gi|23466158|ref|NP_696761.1| tRNA pseudouridine synthase A [Bifidobacterium longum NCC2705] gi|46190438|ref|ZP_00121526.2| COG0101: Pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|189440597|ref|YP_001955678.1| pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|239621038|ref|ZP_04664069.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454842|ref|YP_003661986.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum JDM301] gi|312133902|ref|YP_004001241.1| trua [Bifidobacterium longum subsp. longum BBMN68] gi|322689901|ref|YP_004209635.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis 157F] gi|42559815|sp|Q8CY46|TRUA_BIFLO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238692041|sp|B3DQE2|TRUA_BIFLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|23326895|gb|AAN25397.1| tRNA pseudouridine synthase A [Bifidobacterium longum NCC2705] gi|189429032|gb|ACD99180.1| Pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|239516139|gb|EEQ56006.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516444|emb|CBK70060.1| pseudouridylate synthase I [Bifidobacterium longum subsp. longum F8] gi|296184274|gb|ADH01156.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum JDM301] gi|311773196|gb|ADQ02684.1| TruA [Bifidobacterium longum subsp. longum BBMN68] gi|320461237|dbj|BAJ71857.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis 157F] Length = 303 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 42/287 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + +G + ++LD E M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 164 QASSPIRTIDHFDVNSFG----------------------NLIEIRVVARSFLHTQIRSF 201 + IR + L+ +VA +F +RS Sbjct: 181 -GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSL 239 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VGS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 240 VGSCIKVGSGRKSLEWFAGKMAEPVREGSSGPIAP-QGLTLEHIAYP 285 >gi|206895862|ref|YP_002247302.1| tRNA pseudouridine synthase A [Coprothermobacter proteolyticus DSM 5265] gi|238057727|sp|B5Y955|TRUA_COPPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206738479|gb|ACI17557.1| tRNA pseudouridine synthase A [Coprothermobacter proteolyticus DSM 5265] Length = 259 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 4/244 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++Y ++++ G+ Y G+QRQKNG++IQ +E + + VV +GRTD+GVHA Sbjct: 1 MVKYAGLLQFKGTNYAGFQRQKNGTAIQNVLESTLSQINNRATVVRYSGRTDAGVHAWGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + LN L + ++++ +F + SA+ + YLY + Sbjct: 61 PFVFWGREDLSADKWMFILNRML--PKDMRVISVVRTSPEFDPQLSAVAKQYLYCATQER 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+L S++ + AA+ LVG HDF F S R + V Sbjct: 119 LGPLWDDFFAYLPNLSIETSAVISAARKLVGEHDFKGFSKKGSSVKSTRRKLYEVSVMFT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + V FL+ +R VG+L +G GK +++ L AP +GL+ Sbjct: 179 HSRMYFSFVGNGFLYGMVRLMVGTLLQIGWGKQDVNFIDEVLSGN--AVANYSAPAQGLH 236 Query: 241 FDSV 244 V Sbjct: 237 LVKV 240 >gi|322691842|ref|YP_004221412.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456698|dbj|BAJ67320.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum JCM 1217] Length = 303 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 42/287 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + +G + ++LD E M AA +G HDF +F + + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 164 QASSPIRTIDHFDVNSFG----------------------NLIEIRVVARSFLHTQIRSF 201 + IR + L+ +VA +F +RS Sbjct: 181 -GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSL 239 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VGS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 240 VGSCIKVGSGRKSLEWFAGKMAEPVREGSSGPIAP-QGLTLEHIAYP 285 >gi|227546504|ref|ZP_03976553.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213053|gb|EEI80932.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 305 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 42/287 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 3 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 62 Query: 54 GVHALRQVAHFDLVRE-------WVPVILCKALNAYLK--ISDTISILNLSIVDKQFHAR 104 GVHA QVAH D+ E + + + +AL LK + I I +++ F AR Sbjct: 63 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 122 Query: 105 FSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y+YR+ R + +G + ++LD E M AA +G HDF +F + + Sbjct: 123 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 182 Query: 164 QASSPIRTIDHFDVNSFG----------------------NLIEIRVVARSFLHTQIRSF 201 + IR + L+ +VA +F +RS Sbjct: 183 -GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSL 241 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VGS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 242 VGSCIKVGSGRKSLEWFAGKMAEPVREGSSGPIAP-QGLTLEHIAYP 287 >gi|213964809|ref|ZP_03393008.1| tRNA pseudouridine synthase A [Corynebacterium amycolatum SK46] gi|213952345|gb|EEB63728.1| tRNA pseudouridine synthase A [Corynebacterium amycolatum SK46] Length = 333 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 118/266 (44%), Gaps = 23/266 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN------GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 +R I Y+G+ + GW Q++ ++Q ++E + V V + AGRTD+GV Sbjct: 46 VRLRFDIAYDGTDFHGWAAQRDKPTGEPVRTVQATLESTLEKVLRTPVQLTVAGRTDAGV 105 Query: 56 HALRQVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 HA QVAH D+ P L + + L +++ S F ARFSA Sbjct: 106 HASGQVAHADVPVSCLDTRSIAGDPGNLVRRVARLL--PADVTLRGASFAPSGFDARFSA 163 Query: 108 IRRSYLYRI-ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 +RR Y+YR+ PL +S+D + M++AA L+G +DF F A+ Sbjct: 164 LRRHYVYRVTSCVSGPLPTRARDTAHWRRSVDIDRMQVAADALLGLNDFAAFCRHKPHAT 223 Query: 167 SPIRTIDHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + R + F L E V A +F + +RS VG+ VG+G+ E+ Sbjct: 224 TT-RDLQRFQWFDVSTRQEPELYEAHVTADAFCWSMVRSLVGACLSVGEGRREVGFTEQL 282 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 L + R P+A GL V+Y Sbjct: 283 LSEEKRSPLVPVAEARGLSLVGVDYP 308 >gi|218886490|ref|YP_002435811.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226708648|sp|B8DRQ6|TRUA_DESVM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218757444|gb|ACL08343.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 277 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 117/279 (41%), Gaps = 35/279 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + + Y G+ GWQ Q ++QG +E+ + G V +HGAGRTDSGV Sbjct: 1 MARLALTVSYVGTRLAGWQIQARTDRPQPRTVQGELERIAERIVGAPVRLHGAGRTDSGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + +A NA L D IS+ + V +FHARF A ++Y YR Sbjct: 61 HAEAQVAHMDVPDHRADLDWQRAFNAGL--PDDISVAAVVRVPDEFHARFDARGKTYTYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + + LD + M AA +L G HDF +F++ + +RT+ Sbjct: 119 LWPERRWVPPRLAPFAWATGQLDMDAMDAAAAYLHGMHDFASFQNTGTDIVTTVRTVTRV 178 Query: 176 DVNSFGN----------------------------LIEIRVVARSFLHTQIRSFVGSLKL 207 G ++ A FL +R+ +G L Sbjct: 179 ARRHEGEAPVQPALPGAQPLAGAEETANAMAGGLRVMAWDFEADGFLKQMVRNMMGLLVA 238 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG GK + L A+DRK AP GL V Y Sbjct: 239 VGRGKLPPDAVPAILAARDRKTAPATAPAHGLTLTRVHY 277 >gi|86157969|ref|YP_464754.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] gi|85774480|gb|ABC81317.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] Length = 272 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 119/262 (45%), Gaps = 22/262 (8%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GVRAQLHVAARTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F P L + LN L + I +L+ + V FHAR SA R+Y+Y + Sbjct: 60 AQVVSFSARAALDPAALRRGLNEGL--PEGILVLDAARVGPSFHARGSAASRTYVYLV-- 115 Query: 119 RQAPLALEKGRAWLIPK-----------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 P + AW +P LD MR A VG HDF F Q Sbjct: 116 GAPPPEGLRPYAWTLPDARAFPELAEVPPLDAAAMREALGAAVGEHDFVGFARPGEQRG- 174 Query: 168 PIRTIDHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +RT+ +V G L+ + + + FL +R+ VG+ VG G+ + L + Sbjct: 175 TVRTLLRAEVVEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAVGLGRAPPDVIRTLLATR 234 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R G AP GL +V Y Sbjct: 235 GRYR-GVRAPGWGLTLAAVRYP 255 >gi|317418864|emb|CBN80902.1| tRNA pseudouridine synthase-like 1 [Dicentrarchus labrax] Length = 285 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 93/276 (33%), Positives = 133/276 (48%), Gaps = 35/276 (12%) Query: 3 RYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHA 57 RY + +Y G+ Y G + Q +Q +E AI + V + + RTD GVHA Sbjct: 6 RYLIFFQYIGTKYSGVVKVPPHQLPSKGVQDHLEDAIRKLMPLNPVSLSVSSRTDRGVHA 65 Query: 58 LRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 L AHFDL R + IL +ALN YLK + I I N V FHAR+ A R+Y Sbjct: 66 LSNSAHFDLQRKNNLPPFTEGILIEALNFYLKT-EQIRITNAHRVPDDFHARYQAQSRTY 124 Query: 113 LYRIITRQAPLAL-----EKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQA- 165 +YRI P L E W + LD MR AA LVG HDF++FR++ + Sbjct: 125 VYRIALG-IPNQLLLPLTELKFCWSLRNTELDVGAMRKAAALLVGNHDFSSFRAVSTEMA 183 Query: 166 -SSPIRTIDHFDVNSFGNL-----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 +P++ +D + G+ E+ ARSFL+ Q+R G+L VG G+ Sbjct: 184 FKNPVKVLDVASIQPGGSFVQSHFQREVLFWEVTFKARSFLYKQVRRMTGALVAVGQGRL 243 Query: 214 TSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 + L++ L+A+D P +AP GL+ V+Y Sbjct: 244 SVPQLKEILEARD-TMAYPKNLVAPAHGLFLTRVDY 278 >gi|212223540|ref|YP_002306776.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1] gi|229470756|sp|B6YTJ2|TRUA_THEON RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212008497|gb|ACJ15879.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1] Length = 267 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 26/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVHA 57 +R + I Y+G+ ++G+QRQ +++G I +A+ + E GA RTD GV A Sbjct: 1 MRLALRIAYDGTAFYGFQRQPGLRTVEGEIIRALTKLGIIEDVESSNFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V FD+ ++ + LN +L + +L + V + FH RF A ++Y Y Sbjct: 61 FFNVVAFDVAS-RPDLVRPEVLNFHL---KDVWVLGTAEVPEDFHPRFWAKSKTYRY--- 113 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +LI D + MR A+ +G HDF+ F + +P+R + D+ Sbjct: 114 -------------YLIDAGFDEKAMRECAKLFIGTHDFSAFARLEPH-KNPVRELIRADI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I + +SFL R V +L+ G G T ++EK L + P A PE Sbjct: 160 IKRQGYYIIELEGKSFLWEMARRIVNALRFCGLGILTEEEVEKMLNG-EYSRKIPPARPE 218 Query: 238 GLYFDSVEYS 247 GL +EY Sbjct: 219 GLVLWGIEYE 228 >gi|119025367|ref|YP_909212.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis ATCC 15703] gi|118764951|dbj|BAF39130.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis ATCC 15703] Length = 306 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 121/286 (42%), Gaps = 42/286 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G+G++GW +Q ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHF---------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 VHA QV H + VP ++ + I+I ++ F ARF Sbjct: 65 VHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPDGFDARF 124 Query: 106 SAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y+YRI R + + I LD ++M AA +G HDF +F + + Sbjct: 125 SALERTYVYRIADRSSEVDPRTRNFVLHIDDELDLKSMNEAAAMTIGLHDFGSFATPNP- 183 Query: 165 ASSPIRTIDHFDVNSFGN----------------------LIEIRVVARSFLHTQIRSFV 202 + IR + L+ +VA +F +RS V Sbjct: 184 GGTTIREVKTAYWRRVPQRTLIDDGMTMGERYRTPTVESGLVCFVIVADAFARNMVRSLV 243 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK + + A R+ GP+AP +GL + +EY Sbjct: 244 NGCVQVGIGKRSLDWFAGKMAAPLREGSTGPIAP-QGLTLEHIEYP 288 >gi|162456345|ref|YP_001618712.1| tRNA pseudouridine synthase A [Sorangium cellulosum 'So ce 56'] gi|161166927|emb|CAN98232.1| tRNA pseudouridine synthase A [Sorangium cellulosum 'So ce 56'] Length = 281 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 7/246 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + + Y+G + G+ RQ++ ++ G + A+ ++ I + GA RTD+GVHA Q F Sbjct: 1 MLSVAYDGRPFAGFARQRDQRTVSGELLGALRVIDPGIREIRGASRTDAGVHARDQRVAF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P A +L D I I ++V F RF ++R+ Y Y I+ Sbjct: 61 DTTAPLPPRGWVLATARHL--PDEIVIRRAAVVRLGFSPRFESLRKRYRYLILRDLVRDP 118 Query: 125 LEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN---S 179 RAW + D E R A G HDF FR+ + ++ +RT+ +++ + Sbjct: 119 FLSRRAWRVEGITDEAIERARAEALAAKGTHDFAAFRTSADERTTTVRTLYGVELSLDPA 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ I V +FLH +R VG+L V G + +AL + DR++ G APP+GL Sbjct: 179 DPRVVRIDVEGNAFLHNMVRILVGTLMDVARGHLAPGAIARALSSLDRRDAGITAPPDGL 238 Query: 240 YFDSVE 245 Y + + Sbjct: 239 YLERIH 244 >gi|154486775|ref|ZP_02028182.1| hypothetical protein BIFADO_00600 [Bifidobacterium adolescentis L2-32] gi|154084638|gb|EDN83683.1| hypothetical protein BIFADO_00600 [Bifidobacterium adolescentis L2-32] Length = 306 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 120/286 (41%), Gaps = 42/286 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G+G++GW +Q ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHF---------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 VHA QV H + VP ++ + I+I ++ F ARF Sbjct: 65 VHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPNGFDARF 124 Query: 106 SAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y+YRI R + + I LD + M AA +G HDF +F + + Sbjct: 125 SALERTYVYRIADRSSEVDPRTRNFVLHIDDELDLKAMNEAAAMTIGLHDFGSFATPNP- 183 Query: 165 ASSPIRTIDHFDVNSFGN----------------------LIEIRVVARSFLHTQIRSFV 202 + IR + L+ +VA +F +RS V Sbjct: 184 GGTTIREVKTAYWRRVPQRTLIDDGMTMGERYRTPTVESGLVCFVIVADAFARNMVRSLV 243 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK + + A R+ GP+AP +GL + +EY Sbjct: 244 NGCVQVGIGKRSLDWFAGKMAAPLREGSTGPIAP-QGLTLEHIEYP 288 >gi|301788920|ref|XP_002929883.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like 1-like [Ailuropoda melanoleuca] Length = 290 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 130/273 (47%), Gaps = 31/273 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSI--QGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + ++ Q +E+A + V + RTD+GVHAL Sbjct: 11 RYLVYFQYLGTDFNGVAAVRGSQRAVAXQNYLEEAAKRLNSVVPVKFTISSRTDAGVHAL 70 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALNA+L+ I IL V FHAR +A R+YL Sbjct: 71 CNAAHLDVQRRSGQPPFSPEVLAEALNAHLRHP-AIRILQAFRVPSDFHARHAATSRTYL 129 Query: 114 YRIITRQAPL----ALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR++T E+ R W + LD + M+ AAQHL+G HDF+ F+S A+S Sbjct: 130 YRLVTGCHRPDQLSVFERNRCWPLRAGCLDVDAMQEAAQHLLGTHDFSAFQSAGSPAASS 189 Query: 169 IRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +RT+ V+ + ++SFL+ Q+R L VG G Sbjct: 190 VRTLRRASVSPDPGSPFVLPQENRLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALMPA 249 Query: 217 DLEKALQAQD---RKECGPLAPPEGLYFDSVEY 246 ++ L+++D R + +AP GL+ SV Y Sbjct: 250 QVKVILESRDPLGRHQAR-VAPAHGLFLKSVLY 281 >gi|145596404|ref|YP_001160701.1| tRNA-pseudouridine synthase I [Salinispora tropica CNB-440] gi|145305741|gb|ABP56323.1| tRNA-pseudouridine synthase I [Salinispora tropica CNB-440] Length = 276 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 109/251 (43%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW Q ++ G++ +A+ LV G + AGRTD+GVHA Sbjct: 5 TRVRLDVSYDGADFSGWAVQPERRTVAGALVQALDLVLGVGAATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W + + I ++ F ARFSA R Y YR+ Sbjct: 65 QVCHVDLLTEVWHRHEHTLLRRLARLLPADVRIRAMTEAPDDFDARFSATFRRYEYRVTD 124 Query: 119 RQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + P LD + +AA LVG HDF + + ++ +R + + Sbjct: 125 APWGAEPLRRHDTLAWPSRLDLAALNVAADGLVGEHDFAAYCRRK-ENATTLREVTRLEW 183 Query: 178 NSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + V A +F +RS VG++ VGDG+ + L ++R +AP Sbjct: 184 RRAPDGTLVATVQADAFCQAMVRSLVGAMLAVGDGRRPADWPAGLLTRRERASEVNVAPA 243 Query: 237 EGLYFDSVEYS 247 GL +V Y Sbjct: 244 HGLTLVAVGYP 254 >gi|220917510|ref|YP_002492814.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] gi|219955364|gb|ACL65748.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] Length = 272 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 120/262 (45%), Gaps = 22/262 (8%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GVRAQLHVAARTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F PV L LN L + I +L+ + V FHAR SAI R+Y+Y + Sbjct: 60 AQVVSFSARAALDPVALRGGLNEGL--PEGILVLDAARVGPSFHARGSAIARTYVYLV-- 115 Query: 119 RQAPLALEKGRAWLIPK-----------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 P + AW +P LD MR A H VG HDF F Q Sbjct: 116 GAPPPVGLRPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFARPGEQRG- 174 Query: 168 PIRTIDHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +RT+ +V G L+ + + + FL +R+ VG+ G G+ + L + Sbjct: 175 TVRTLLRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGRAPPDVIRTLLATR 234 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R G AP GL +V Y Sbjct: 235 GRYR-GVRAPGWGLTLAAVRYP 255 >gi|319956627|ref|YP_004167890.1| tRNA pseudouridine synthase a [Nitratifractor salsuginis DSM 16511] gi|319419031|gb|ADV46141.1| tRNA pseudouridine synthase A [Nitratifractor salsuginis DSM 16511] Length = 242 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 120/250 (48%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R +I Y+GS + G+QRQK ++QG++E+A+ + G + G+GRTD+GVHA Sbjct: 1 MQRIKAVIAYDGSAFEGFQRQKRTPRTVQGALERALASL-GIGTPIVGSGRTDAGVHATG 59 Query: 60 QVAHFDLVREW---VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFDL W L LN L D I +L+ V FHAR+ A R Y Y Sbjct: 60 QVIHFDLPPHWAKQPLDELQIHLNRRL---DAIRFKHLTPVPADFHARYDAKERIYRYIF 116 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 R+ P E+ + + D + A + GRHDF+ F + + IRTI Sbjct: 117 --RREPSIFERKYVAGLAIA-DEAKLSEALKTFQGRHDFSHFLKTGSETAHNIRTITRAY 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I A FL Q+R V + V +G+ + L++ L+ R LAPP Sbjct: 174 FLRRGKYGYIYFHADGFLRAQVRMMVHAAAAVANGELSLEQLKEQLELGKR-YTTRLAPP 232 Query: 237 EGLYFDSVEY 246 EGLY V Y Sbjct: 233 EGLYLARVIY 242 >gi|311745752|ref|ZP_07719537.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] gi|311302425|gb|EAZ79545.2| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] Length = 274 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 12/250 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVA 62 Y I Y G+ Y GW Q N ++Q +E+ + V G E + GA RTDSGV + Sbjct: 8 YLFSISYYGARYKGWAPQPNQQTVQRRLERVLRHVLGHEDFSLIGASRTDSGVSCVGGFV 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 L E +L N +L I + ++ V F+ S +++Y Y Sbjct: 68 QVFLRDEVEMDLLLPQFNEHL--PQDIHLNSVKEVSTTFNLIQSVKKKTYRYYFSNSSDF 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + L+ E M A + +G+HDF +F + R + ++ Sbjct: 126 HPFASAFMVNASEELNWEAMNEACKSFIGKHDFKSFCKPSENKTDYNREVLSAEICDSNE 185 Query: 183 LI---------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + ++ FLH Q+R + +L +G G+ +++E ++ DR E P Sbjct: 186 FMGQYFPHKIYYFQITGTGFLHHQVRMMMSALWQIGKGEMDLSEIEARFESSDRFEKLPP 245 Query: 234 APPEGLYFDS 243 AP GL Sbjct: 246 APANGLVLWE 255 >gi|309802980|ref|ZP_07697081.1| tRNA pseudouridine synthase A [Bifidobacterium dentium JCVIHMP022] gi|308220447|gb|EFO76758.1| tRNA pseudouridine synthase A [Bifidobacterium dentium JCVIHMP022] Length = 302 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 80/288 (27%), Positives = 123/288 (42%), Gaps = 46/288 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +R + + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+G Sbjct: 1 MRLRIDLAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREW-----------VPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 VHA QV H D+ V L + L L + I+I ++ + F A Sbjct: 61 VHASHQVCHLDVSETILARCVGHMDVPPVVALTRRLQRML--PNDITIHGINEAPQGFDA 118 Query: 104 RFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R+Y+YRI R + +G + LD E M AA +G HDF +F + + Sbjct: 119 RFSALERTYVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPN 178 Query: 163 CQASSPIRTIDHFDVNSFGN----------------------LIEIRVVARSFLHTQIRS 200 + IR + L +VA +F +RS Sbjct: 179 P-GGTTIREVKTAYWRRIPQRPLIDGEMTMGERYHTPSMESGLACFTIVADAFARNMVRS 237 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 V VG GK + + R+ GP+AP +GL + +EY Sbjct: 238 LVNGCVQVGIGKRSLDWFADKMATPLREGSTGPIAP-QGLTLEHIEYP 284 >gi|147903104|ref|NP_001085529.1| tRNA pseudouridine synthase-like 1 [Xenopus laevis] gi|82236585|sp|Q6GQ53|PUSL1_XENLA RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|49115069|gb|AAH72895.1| MGC80334 protein [Xenopus laevis] Length = 298 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 128/273 (46%), Gaps = 29/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSI---QGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y G+ Y G S+ Q +E A + + + RTDSGVHA+ Sbjct: 7 RYLVFFQYYGTKYSGVMETPITQSVLGVQNYLEVAAQKLRPVGTIKFFISSRTDSGVHAI 66 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 +AH D+ R + IL +A+N +L+ + I +L V FHAR +A+ R+Y+ Sbjct: 67 CNLAHVDIERAKGKPPFTEEILVQAMNHHLQ-PEPIRLLKAIRVCDNFHARHNALSRTYV 125 Query: 114 YRIITRQAPL---ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSP 168 YR+ + E W I L+ + A++ L+G H+F+ FRS + + SP Sbjct: 126 YRVAAGCSRPELPVFEGNLCWAIQDGLNVTAINEASKMLLGTHNFSAFRSANSENAFKSP 185 Query: 169 IRTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 I+T+ D+N + ARSFL+ Q+R G+L VG G+ T Sbjct: 186 IKTLQQADINPSCGILTHHWQSRNLQFWDFTFRARSFLYKQVRRMTGALVAVGQGRLTPQ 245 Query: 217 DLEKALQAQDRK--ECGPLAPPEGLYFDSVEYS 247 +++ L+ QD +APP GL+ VEY Sbjct: 246 QIKEFLENQDPNCFLGNFVAPPHGLFLKDVEYD 278 >gi|222630953|gb|EEE63085.1| hypothetical protein OsJ_17893 [Oryza sativa Japonica Group] Length = 279 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 110/212 (51%), Gaps = 8/212 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ M+I Y+G+ + GWQ Q + +IQ SIE A+ +T + + + GAGRTD+GVHA Sbjct: 64 KWRMVIAYDGTKFKGWQYQPSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAWG 123 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + A+N L I + +S +FHAR S + Y Y+I Sbjct: 124 QVAHFTTPFSYHCLDSMHSAINGLL--PHEIRVREISAAKPEFHARTSTRSKIYHYKIYN 181 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFD 176 A+ L+ + MR AA+H VG HDFT+F + + + SPI+ I FD Sbjct: 182 GPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFD 241 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 V G ++++ + FL+ Q+R+ GS V Sbjct: 242 VIEMGAILQLEIEGTGFLYRQVRNMAGSSLAV 273 >gi|197122727|ref|YP_002134678.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] gi|196172576|gb|ACG73549.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] Length = 272 Score = 211 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 82/262 (31%), Positives = 120/262 (45%), Gaps = 22/262 (8%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GLRAQLHVAARTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F P L + LN L + I +L+ + V FHAR SAI R+Y+Y + Sbjct: 60 AQVVSFSARAALDPAALRRGLNEGL--PEGILVLDAARVGPSFHARGSAIARTYVYLV-- 115 Query: 119 RQAPLALEKGRAWLIPK-----------SLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 P + AW +P LD MR A H VG HDF F Q Sbjct: 116 GAPPPEGLRPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFARPGEQRG- 174 Query: 168 PIRTIDHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +RT+ +V G L+ + + + FL +R+ VG+ G G+ + L + Sbjct: 175 TVRTLLRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGRAPPDVIRTLLATR 234 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R G AP GL +V Y Sbjct: 235 GRYR-GVRAPGWGLTLAAVRYP 255 >gi|229818212|ref|ZP_04448494.1| hypothetical protein BIFANG_03510 [Bifidobacterium angulatum DSM 20098] gi|229784463|gb|EEP20577.1| hypothetical protein BIFANG_03510 [Bifidobacterium angulatum DSM 20098] Length = 302 Score = 211 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 125/285 (43%), Gaps = 41/285 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G++GW Q + ++QG IE+A+ + E + + AGRTD+G Sbjct: 1 MRLRIDLAYDGGGFYGWAVQPDIRTVQGEIEQALHRILRVDPNDASEPLRLVVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLK--ISDTISILNLSIVDKQFHARF 105 VHA QV H D+ + + + AL L+ + D I+I +S F ARF Sbjct: 61 VHASHQVCHIDMSPDILERAVGHMKVPAVTALEHRLQRVLPDDITIHRISEAPVGFDARF 120 Query: 106 SAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y+YRI R + +G I LD E M +AA +G HDF +F + + Sbjct: 121 SALERTYVYRIADRSSEVDPRLRGCVLHIDGDLDIEAMNLAAAQTIGLHDFGSFATPNP- 179 Query: 165 ASSPIRTIDHFDVNSFG---------------------NLIEIRVVARSFLHTQIRSFVG 203 + IR + D L+ +VA +F +RS V Sbjct: 180 GGTTIREVKQADWARVPAQPLIAQPMAGKGYVVPTFESGLVCFTIVADAFARNMVRSLVN 239 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG K + + R+ GP+AP +GL + V Y Sbjct: 240 GCVQVGLDKRDLDWFKGKMAVPKREGSTGPIAP-QGLTLEHVAYP 283 >gi|219682884|ref|YP_002469267.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis AD011] gi|254789603|sp|B8DW40|TRUA_BIFA0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219620534|gb|ACL28691.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis AD011] gi|289178185|gb|ADC85431.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis BB-12] Length = 298 Score = 211 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 125/282 (44%), Gaps = 37/282 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----VVVHGAGRTDSGVH 56 M R + + YNG+ + GW Q ++QG++E+A+ +T + + AGRTD+GVH Sbjct: 1 MTRLRIDLAYNGAAFHGWAAQPGCRTVQGTVEEALRRITRMPDAGSLRLTVAGRTDAGVH 60 Query: 57 ALRQVAHFDLVRE-------WVPVILCKALNAYL--KISDTISILNLSIVDKQFHARFSA 107 A QV H D+ + + + +AL L + D I+I +S+ F ARFSA Sbjct: 61 ATHQVCHVDVPDQTLGQCVGHMNLTPVQALQTRLSRMMPDDIAIHGISVAPAGFDARFSA 120 Query: 108 IRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R+Y+YRI + P K AW + LD M AA +G HDF +F + Sbjct: 121 LERTYVYRIADARVPWDPRLKDFAWRTDRELDIAQMNAAAALTLGLHDFGSFAIANP-GG 179 Query: 167 SPIRTIDHFDVNSFG--------------------NLIEIRVVARSFLHTQIRSFVGSLK 206 + IR + L+ +VA +F +RS VG+ Sbjct: 180 TTIREVKTAYWQRVPTRPLLGPGMGERYHTPAVESGLLCFTIVADAFARNMVRSLVGACV 239 Query: 207 LVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK ++ R+ GP+AP +GL + + Y Sbjct: 240 QVGMGKRDVDWFAGKMRVPLREGSTGPIAP-QGLTLEHIAYP 280 >gi|307721208|ref|YP_003892348.1| tRNA pseudouridine synthase A [Sulfurimonas autotrophica DSM 16294] gi|306979301|gb|ADN09336.1| tRNA pseudouridine synthase A [Sulfurimonas autotrophica DSM 16294] Length = 236 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 116/247 (46%), Gaps = 13/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + YNG+ +FG Q QK ++ G +E + + E V +GRTD GVHA Q Sbjct: 1 MRVALHLAYNGTHFFGSQTQKETSKTVLGELENVLKKLGIEQ-KVIASGRTDKGVHATMQ 59 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL W L + LN L D + + + V FHAR+SA +R+Y Y I T Sbjct: 60 VCHIDLPPYWEDTQKLKRVLNEMLN--DALHVKRIRPVSDDFHARYSAKKRTYRYIIKTT 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q+ EK + K ++ EN++ VG+HDF F + S R I Sbjct: 118 QS-NPFEKDFVTFL-KDINFENIQENIALFVGKHDFKQFMKTGSEVKSTTRIIYKAFAYK 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + + A FL +QIR VG+L + +++ L + + P AP GL Sbjct: 176 YKDYVVLNFQANGFLRSQIRLMVGALLS-----LNAQQIQEQLNCSNNYKIKP-APANGL 229 Query: 240 YFDSVEY 246 Y ++ Y Sbjct: 230 YLSTITY 236 >gi|149278992|ref|ZP_01885126.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] gi|149230271|gb|EDM35656.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] Length = 267 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y+G Y GWQ+Q ++QG +EK + V V + G GRTD+ VHA + Sbjct: 1 MRYFVHIGYHGLHYNGWQKQPGVLNVQGVLEKTLSQVLKRPVEIIGCGRTDAHVHASQFF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ W L LN L I++ ++ + HARF A++RSY Y + T + Sbjct: 61 FHMDIEEAWD-FDLIFRLNKSL--PTNIAVFDVIPMPGLQHARFDAVQRSYDYFLHTYKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--VNS 179 P L+ ++ + K L + M+ AA L DF F + + I + V+ Sbjct: 118 PF-LQGLSSYYLLKDLKFDEMKAAAAILPKYKDFRPFCTSPDKYEHTICNVMSASLTVDP 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + ++ + FL IR +G L VG G + + E+ L + E A P+GL Sbjct: 177 NGDRMRFQISSNRFLSKMIRIIMGQLLKVGRGVLSVDEFEQYLIDKRTPELITPAHPQGL 236 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 237 YLSKVTYP 244 >gi|260906021|ref|ZP_05914343.1| pseudouridylate synthase I [Brevibacterium linens BL2] Length = 284 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 85/266 (31%), Positives = 117/266 (43%), Gaps = 20/266 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + Y G+ + GW +Q ++Q S+E + +TG V AGRTD+GVHA RQ Sbjct: 1 MTRFRIDLGYRGTDFHGWAKQPGLRTVQDSLEAGLSRITGAEVATIVAGRTDAGVHARRQ 60 Query: 61 VAHFDLV-----------REWVPVILCKALNAYLKIS--DTISILNLSIVDKQFHARFSA 107 V H DL L L L + D I I +S V + F ARFSA Sbjct: 61 VVHIDLAEEGIEKLIGKSSRPAEAALLSRLRGVLTVDDTDDIVIHAVSEVPEDFDARFSA 120 Query: 108 IRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R+Y YR+ R+ L LD E M AA+ G HDF F + + Sbjct: 121 LWRTYQYRLADRRSFIDPLLTPVTPRHKGELDAEAMAEAAREAQGLHDFIPFCKPR-EGA 179 Query: 167 SPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + IRT+ +V +I I + A +F H +R+ VG L VG G W T + L Sbjct: 180 TTIRTLHELEVTRDQEAVITIDLRADAFCHHMVRALVGGLIKVGSGTWPVTRPAELLTEA 239 Query: 226 D--RKECGPLA--PPEGLYFDSVEYS 247 D P+ P GL V Y Sbjct: 240 DSGVDPDVPMFVSPAHGLVLTGVGYP 265 >gi|255533538|ref|YP_003093910.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] gi|255346522|gb|ACU05848.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] Length = 269 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 115/248 (46%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG Y GWQ+Q ++QG IE A+ V V + G GRTD+ VHA + Sbjct: 1 MRYFVHIGYNGLKYNGWQKQPGVMNVQGVIENALSKVLKTPVFIIGCGRTDAHVHASQFF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ ++W L +N L I+I + +D HARF A+ RSY Y I T + Sbjct: 61 FHMDVEQDWD-FDLVFRMNKLL--PAGIAIFEVIQMDGLQHARFDAVLRSYDYFIHTYKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--VNS 179 P L ++ + LD + M+ AA L DF F + + + + V+ Sbjct: 118 PF-LNGLSSFYLLDKLDFDKMKQAAAILPKYKDFRAFCTSPDKYEHTLCNVMSASLAVDE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + ++ + FL IR +G L +G G + + E L E A P+GL Sbjct: 177 NGDKLRFQISSNRFLSKMIRIIMGQLLKIGRGVLSVDEFEHYLIYNQTPELITPAHPQGL 236 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 237 YLSKVTYP 244 >gi|153824082|ref|ZP_01976749.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|126518399|gb|EAZ75622.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] Length = 205 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 91/187 (48%), Gaps = 2/187 (1%) Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 1 MVHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHV 58 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 59 YRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 118 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 119 GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLY 178 Query: 241 FDSVEYS 247 SV+Y Sbjct: 179 LVSVDYP 185 >gi|317125837|ref|YP_004099949.1| tRNA pseudouridine synthase A [Intrasporangium calvum DSM 43043] gi|315589925|gb|ADU49222.1| tRNA pseudouridine synthase A [Intrasporangium calvum DSM 43043] Length = 303 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 16/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 +R + + Y G+ + GW Q +++G + A+ V V + AGRTD+GVHA Sbjct: 20 VRLRLDLAYEGTAFSGWAAQPGLRTVEGELATAVTTVLRAPAPVSLTVAGRTDAGVHARG 79 Query: 60 QVAHFDLV----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV H D+ P + + + ++ + F ARFSA Sbjct: 80 QVVHVDVEPAALAALPGRSNRTPEE-ALLRRLGGLLDPDVVVHRVARAPEGFDARFSAQE 138 Query: 110 RSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R YLYR+ A L + P+ LD E M AA+ LVG DF F + ++ Sbjct: 139 RRYLYRLADADALRDPLRRHDTVWWPRPLDAERMDEAARPLVGLRDFAAFCKRR-EGATT 197 Query: 169 IRTIDHFDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +RT+ + G+ + V A +F H+ +RS VG+ VG+G+ ++ + Q R Sbjct: 198 VRTLLEYRWVRLGDGVLAATVRADAFCHSMVRSLVGAAVAVGEGRRPTSWPAELQQRTQR 257 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + P GL ++V Y Sbjct: 258 AADVRVMPAHGLSLEAVTYP 277 >gi|297242940|ref|ZP_06926878.1| tRNA pseudouridine synthase [Gardnerella vaginalis AMD] gi|296889151|gb|EFH27885.1| tRNA pseudouridine synthase [Gardnerella vaginalis AMD] Length = 301 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 126/281 (44%), Gaps = 36/281 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ +V E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPTLRTVQGDIEAALHMVLRVPENDPTESLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLK--ISDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + + AL L+ ++ I I +S+ F ARF Sbjct: 61 VHASHQVCHLDISDETLQRCIGHTGLDGVSALEYRLRHVLAQDIVIHKVSVAPYGFDARF 120 Query: 106 SAIRRSYLYRI---ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 SA+ R+Y+YRI + +G LD + M AA+ +VG HDF +F + Sbjct: 121 SALERTYVYRIADGYCKAKYDPRMRGFVLRFDSELDIDAMNQAARLMVGLHDFGSFAKPN 180 Query: 163 CQASSPIRTIDHFDVNSFGN----------------LIEIRVVARSFLHTQIRSFVGSLK 206 + IR + + G+ L+E +VA +F H +RS V + Sbjct: 181 P-GGTTIRKVKQARWHRVGSKDAQNSTGFVLPIEQSLLEFTIVADAFAHNMVRSLVQACV 239 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +G GK + E+ + R+ P GL + V Y Sbjct: 240 QIGCGKRSVDWFEEKINVPLREGSTGPIDPHGLTLEYVAYP 280 >gi|15639816|ref|NP_219266.1| tRNA pseudouridine synthase A [Treponema pallidum subsp. pallidum str. Nichols] gi|189026054|ref|YP_001933826.1| tRNA pseudouridine synthase A [Treponema pallidum subsp. pallidum SS14] gi|6136049|sp|O83802|TRUA_TREPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689345|sp|B2S468|TRUA_TREPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3323141|gb|AAC65796.1| pseudouridylate synthase (hisT) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018629|gb|ACD71247.1| pseudouridylate synthase [Treponema pallidum subsp. pallidum SS14] Length = 280 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 8/238 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 + + I Y+G+ + GWQ+Q + S+QG +EK + + + V G+GRTDSGVH Sbjct: 5 RKILLRISYDGTRFCGWQKQVSGSRERAPSVQGELEKVAEKIHHQKIAVIGSGRTDSGVH 64 Query: 57 ALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ Q AHF R + A N+ L +I I + V Q HARFSA+ R+Y Y Sbjct: 65 AVGQAAHFCTPMRNILAYRFIPAFNSLL--PHSIRITDAREVSSQLHARFSAVMRTYRYH 122 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + A E W I + D + A L G D T+F + +++S R Sbjct: 123 LHCAPVAYAHELPYCWHIARMPDIHLLNQYAATLKGELDCTSFAAAGDKSASKSRYFYDT 182 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + ++ + A +FL +RS G+L + + + + L A+DR+ GP Sbjct: 183 HFSFNHRVLTFEISANAFLWKMVRSLTGTLLHCEKKRCSVREFVRILHAKDRRLQGPP 240 >gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219] gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219] Length = 273 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 107/249 (42%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + I Y GS Y G Q Q S+I+G I +A+ + +GRTD+GVHA Sbjct: 1 MRVALKIAYIGSSYRGSQVQPGVSTIEGKIFEALQSLEIIEDPSSARFVSSGRTDTGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + QV FD + + + + +N+ L I + + VD FH R AI R+Y Y Sbjct: 61 MGQVVAFDTDK--PKLAIPRVINSKL--PGDIWAWSRAEVDSDFHPRRYAINRTYRYITP 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + A D +R A L G HDF F S IR I+ DV Sbjct: 117 SMDA----------------DISKLRAACSILEGSHDFANFC-FRDTGRSTIRRIEKIDV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GNL+ I + A SFL IR V L LVG G LE L +E A P Sbjct: 160 RLAGNLLRIDITANSFLWKMIRKIVTVLLLVGSGARDLDWLENMLDPASYEEGIKPAKPY 219 Query: 238 GLYFDSVEY 246 GL +V Y Sbjct: 220 GLILTNVNY 228 >gi|212697539|ref|ZP_03305667.1| hypothetical protein ANHYDRO_02112 [Anaerococcus hydrogenalis DSM 7454] gi|212675538|gb|EEB35145.1| hypothetical protein ANHYDRO_02112 [Anaerococcus hydrogenalis DSM 7454] Length = 242 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 104/219 (47%), Gaps = 3/219 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I+Y+GS + G+Q QK+ ++Q +E+AI VTGE + +GRTDSGVHA Sbjct: 4 QNILLKIQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANEMY 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F ++ L YL I L+ VDK FHARFS ++Y Y I + Sbjct: 64 VNFLTAKDIRADKFHFHLKKYL--PADILALSSKKVDKNFHARFSVKTKTYKYVISLEKI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSF 180 + + I LD + ++ + L G HDF F S + IR ID Sbjct: 122 LHPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFRAFMLSEKNDIINTIRKIDDCYYILD 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 N++ + A SFLH Q+R GSL + GK + D + Sbjct: 182 NNILFLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFK 220 >gi|241896974|ref|NP_001028662.1| tRNA pseudouridine synthase-like 1 [Mus musculus] gi|218525914|sp|A2ADA5|PUSL1_MOUSE RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|123295163|emb|CAM18398.1| pseudouridylate synthase-like 1 [Mus musculus] Length = 291 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 30/274 (10%) Query: 3 RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + ++Y G+ + G + +E+A + + V + RTD+GVHAL Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P ++ KALN +LK I +L V FHAR +A R+Y Sbjct: 73 SNAAHLDIQRRPGQSPFSPEVVAKALNTHLKHP-AIRVLKAFRVPNDFHARHAATSRTYQ 131 Query: 114 YRIITRQAPL----ALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T + E+ W + + LD M+ AAQHL+G HDF+ F+S ++ Sbjct: 132 YRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTNT 191 Query: 169 IRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V+ + ++SFL+ Q+R L VG G Sbjct: 192 VRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAP 251 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEYS 247 T ++ L++QD K +AP GL+ SV Y Sbjct: 252 TQVKVILESQDPLGKYQARVAPARGLFLKSVLYD 285 >gi|13507935|ref|NP_109884.1| tRNA pseudouridine synthase A [Mycoplasma pneumoniae M129] gi|2499079|sp|Q50291|TRUA_MYCPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1215692|gb|AAC43685.1| hypothetical 28k protein (alkaline endoglucanase); GT9_orf321 [Mycoplasma pneumoniae] gi|1674340|gb|AAB96283.1| pseudouridylate synthase I [Mycoplasma pneumoniae M129] gi|301633310|gb|ADK86864.1| tRNA pseudouridine synthase A [Mycoplasma pneumoniae FH] Length = 243 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 106/248 (42%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ YNG+ + GW +Q ++QG IE+ + L+ + ++G+GRTD GVHA+ Q Sbjct: 1 MPRYLAIVAYNGAPFRGWAKQPGYHTVQGQIEQNLALIYQTPINIYGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H DL + L LN I + L V +FHARF+ + Y Y I TR Sbjct: 61 TFHVDLPDKLPLKQLIAKLNQLNY--PDIFVKALVPVAPRFHARFAVKTKVYEYLINTRA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + W LD + +GR DF +F + RTI V Sbjct: 119 F-NPAQYHTVWQYNHPLDLAQLEADTTLFLGRKDFWSFSTAS--QKDTQRTISKIIVQQD 175 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ FL QIR V SL + + +++ + C AP GL Sbjct: 176 HTGTVKLTFFGNGFLRNQIRMMVASLVALNNRTLMRETVQQLFDQPQKGGCKVKAPACGL 235 Query: 240 YFDSVEYS 247 Y +V Y Sbjct: 236 YLKTVLYE 243 >gi|282163988|ref|YP_003356373.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE] gi|282156302|dbj|BAI61390.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE] Length = 279 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 112/247 (45%), Gaps = 23/247 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y G+ + G Q Q +++G + K + + GE V +GRTD+GVHAL Q Sbjct: 14 KVAFKLAYVGTDFSGSQSQPGRRTVEGELRKGLVEKGIIGEKTKVEFSGRTDAGVHALGQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + + + +N+ L + + ++V F R A+ R+Y Y + Sbjct: 74 VIAFVPKNDKLTE--PRIINSVL--PADMWVYAKAVVPDDFDPRRHAVSRTYRYLLY--- 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP +E+ +Q G HDFT F S+ +P+RT+ V Sbjct: 127 APDVIERRIVTY-------------SQLFPGTHDFTNFSSVEPN-KNPVRTVKSISVTKR 172 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ I + A SFL +R V L+LVG K + +E+ L+ + +E P A GLY Sbjct: 173 GDMYVIDIEADSFLWNMVRKIVTGLRLVGSNKRPAQWIEQMLKPDEYREGIPPALAAGLY 232 Query: 241 FDSVEYS 247 VEY Sbjct: 233 LMKVEYP 239 >gi|313140894|ref|ZP_07803087.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] gi|313133404|gb|EFR51021.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] Length = 304 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 40/284 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+G Sbjct: 5 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHF---------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 VHA QV H + VP + + I+I ++++ F ARF Sbjct: 65 VHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARF 124 Query: 106 SAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y+YR+ R + +G + LD M AA +G HDF +F + + Sbjct: 125 SALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNP- 183 Query: 165 ASSPIRTIDHFDVNSFG--------------------NLIEIRVVARSFLHTQIRSFVGS 204 + IR + +L+ +VA +F +RS VG Sbjct: 184 GGTTIREVKTAYWRRIPTRPLVVDGVGERYRTPAAESDLLCFTIVADAFARNMVRSLVGG 243 Query: 205 LKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK ++ + + R+ GP+AP +GL + V Y Sbjct: 244 CIQVGMGKRSTDWFREKMAVPLREGSTGPIAP-QGLTLEHVAYP 286 >gi|159039803|ref|YP_001539056.1| tRNA pseudouridine synthase A [Salinispora arenicola CNS-205] gi|157918638|gb|ABW00066.1| tRNA pseudouridine synthase A [Salinispora arenicola CNS-205] Length = 276 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 109/251 (43%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW Q + ++ G + +A LV G + AGRTD+GVHA Sbjct: 5 TRVRLDVSYDGTDFSGWAVQPDRRTVAGVLVQAFDLVLGSDAATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHVDLLTEVWRRHEGTLLRRLARLLPGDVRVRAVTGVPGDFDARFSATFRRYEYRVTD 124 Query: 119 RQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + LD + + AA LVG HDF + + ++ +R + D Sbjct: 125 APWGAEPLRRHDTLAWSSRLDQDALNAAADGLVGEHDFAAYCRRK-ENATTLREVTRLDW 183 Query: 178 NSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + V A +F +RS VG++ +VGDG+ + L ++R +AP Sbjct: 184 RRSADGVLVATVQADAFCQAMVRSLVGAMLVVGDGRRPAGWPAGLLARRERANEVNVAPA 243 Query: 237 EGLYFDSVEYS 247 GL +V Y Sbjct: 244 HGLTLVAVGYP 254 >gi|295395151|ref|ZP_06805359.1| tRNA pseudouridine synthase A [Brevibacterium mcbrellneri ATCC 49030] gi|294971913|gb|EFG47780.1| tRNA pseudouridine synthase A [Brevibacterium mcbrellneri ATCC 49030] Length = 303 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 85/269 (31%), Positives = 118/269 (43%), Gaps = 24/269 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y G+ + GW Q + ++QG +E A+ + V V AGRTD+GVHA RQV Sbjct: 17 QRFRIDLGYVGTHFHGWALQPHLRTVQGELETALARILSAPVRVTVAGRTDAGVHARRQV 76 Query: 62 AHFDLVREWVPVI----------------LCKALNAYLKISD--TISILNLSIVDKQFHA 103 H D+ P + L L L D I I +++ V F A Sbjct: 77 VHVDIPHTDFPRLVGQPRARAEQRTPARGLTSRLRGVLARQDASDIVIHDVTAVHADFDA 136 Query: 104 RFSAIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ RSY YR+ QA L LD M AAQ + G DF F Sbjct: 137 RFSALWRSYTYRLADPQAFTDPLTAAFTVEHRAELDVAAMSAAAQQVCGLRDFLPFCKPR 196 Query: 163 CQASSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + S+ IRT++ V G +IE + A +F H +R+ VG L VG+GKW L Sbjct: 197 -EGSTTIRTLEELRVERVGSGVIEFFLRADAFCHHMVRALVGGLVKVGEGKWGPGRLAGM 255 Query: 222 LQAQDRKECG---PLAPPEGLYFDSVEYS 247 + R + P GL + V Y Sbjct: 256 CEEAGRGGSEFPMFVFPAHGLVLEDVGYP 284 >gi|315452593|ref|YP_004072863.1| tRNA pseudouridine synthase A [Helicobacter felis ATCC 49179] gi|315131645|emb|CBY82273.1| tRNA pseudouridine synthase A [Helicobacter felis ATCC 49179] Length = 246 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 104/251 (41%), Gaps = 14/251 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M++ Y+GS ++G+ +Q N S++G++E A+ + G + AGRTD GVHAL Q Sbjct: 1 MGRFQMLLAYDGSAFYGYAKQPNLPSVEGALESALLKL-GISSPILCAGRTDRGVHALCQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L + L L I + V FH RF A R Y Y Sbjct: 60 VISFSTP--LSLQTLQRHLPPKLPAP--ILCKGIQEVPLDFHPRFDATWRLYRYICTNIP 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P + ++ A VG HDF F + RTI V Sbjct: 116 -PSPFLSRFIAHCAYGP-LKLIQEALNLFVGTHDFKFFCKR--ETRHTQRTIHSTKVYQR 171 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I + A SFL Q+R V + GK + DL+ + + R LAPP Sbjct: 172 VLYNHPCIVIAIRAPSFLRAQVRLMVSAALAHSLGKLSLEDLKAQIATRARHH-HLLAPP 230 Query: 237 EGLYFDSVEYS 247 +GLY V Y Sbjct: 231 QGLYLARVAYP 241 >gi|311064868|ref|YP_003971594.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum PRL2010] gi|310867188|gb|ADP36557.1| TruA tRNA pseudouridine synthase A [Bifidobacterium bifidum PRL2010] Length = 303 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 40/284 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+G Sbjct: 4 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTG 63 Query: 55 VHALRQVAHF---------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 VHA QV H + VP + + I+I ++++ F ARF Sbjct: 64 VHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARF 123 Query: 106 SAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R+Y+YR+ R + +G + LD M AA +G HDF +F + + Sbjct: 124 SALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNP- 182 Query: 165 ASSPIRTIDHFDVNSFG--------------------NLIEIRVVARSFLHTQIRSFVGS 204 + IR + +L+ +VA +F +RS VG Sbjct: 183 GGTTIREVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLVGG 242 Query: 205 LKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK ++ + + R+ GP+AP +GL + V Y Sbjct: 243 CIQVGMGKRSTDWFREKMAVPLREGSTGPIAP-QGLTLEHVAYP 285 >gi|194246764|ref|YP_002004403.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma mali] gi|254764860|sp|B3R022|TRUA_PHYMT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193807121|emb|CAP18559.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma mali] Length = 244 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 6/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQV 61 Y +++ Y+G+ Y+G+Q+Q + ++IQ +E + + + + ++GA RTD GVHA QV Sbjct: 5 NYKLVLSYDGTNYYGFQKQLHLNTIQSVLENVLNKITKQKKIKIYGASRTDKGVHASGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF L K LN L I I + ++ K+FH RF A + Y Y ++ Sbjct: 65 VHFQLPFLIPNDHFQKILNFCL--PSDIQITKIILISKEFHCRFQAKSKIYHYVFSKKKL 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 IP ++D ++ A + G+HDF+ F S + R I + Sbjct: 123 -NVFNYRFQVYIP-NMDFNKIKEAILFIEGKHDFSLFTSQKS-LKNYQRIIFKAFIKETK 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + SF+ IR VG L + K T ++ ++ L + ++ LAP +GL Sbjct: 180 QKYFLIIHGNSFIQHMIRFLVGFLIEIAQNKKTLSEFKQMLDLKINQKARLLAPAKGLIL 239 Query: 242 DSVEY 246 + Y Sbjct: 240 KKIFY 244 >gi|153807552|ref|ZP_01960220.1| hypothetical protein BACCAC_01832 [Bacteroides caccae ATCC 43185] gi|149129914|gb|EDM21126.1| hypothetical protein BACCAC_01832 [Bacteroides caccae ATCC 43185] Length = 220 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 104/218 (47%), Gaps = 7/218 (3%) Query: 33 KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 KA+ + V GAGRTD+GVHA VAHFD V + + LN L IS+ Sbjct: 2 KALSTFLRCEIEVVGAGRTDAGVHASLMVAHFDYDGLLDTVSVAEKLNRLL--PPDISVY 59 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + V + HARF A R+Y Y + + P + W I SLD E M AA+ L Sbjct: 60 RVCRVKPEAHARFDATARTYKYYVTAVKYP--FNRQYRWRIYSSLDYERMNEAARTLFEY 117 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVG 209 DFT+F +H + I I H + + + A FL +R+ VG+L VG Sbjct: 118 SDFTSFSKLHTDVKTNICHITHAEWTKVTDDEATWVFTIRADRFLRNMVRAIVGTLIEVG 177 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 GK + D + ++ QDR + G AP + L+ +VEY Sbjct: 178 RGKLSVEDFRRIIEQQDRCKAGTSAPGQALFLVNVEYP 215 >gi|303328364|ref|ZP_07358802.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3] gi|302861694|gb|EFL84630.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3] Length = 226 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 14/227 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R +++ Y G+GY GWQ Q+ +IQG +E A+ ++ G V VHG+GRTD+GVHA Sbjct: 1 MRLKLLLAYLGTGYSGWQIQEKPSPPPTIQGELEAALRVLAGAPVRVHGSGRTDAGVHAH 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + ++LNA L I IL FHAR A+R++Y+Y+ Sbjct: 61 GQVAHCDVPDAKAGLRWQRSLNALL--PPEIRILAAEPAAADFHARKDALRKTYVYQFWQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +A + + + LD E MR A HL+G HDF ++ S RT+ +++ Sbjct: 119 ERAFVPPQLAPFFWNCGPLDVEAMRAALPHLLGEHDFAGLQNAGTDMESTTRTVFRAELD 178 Query: 179 ---------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + + V A FL +R+ G L G GK Sbjct: 179 IPPPCEFYPPHAPGLRLTVTANGFLKQMVRNMAGLLAACGQGKIRPE 225 >gi|13358100|ref|NP_078374.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761947|ref|YP_001752621.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508635|ref|ZP_02958135.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|26006901|sp|Q9PPV4|TRUA_UREPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030149|sp|B1AJH7|TRUA_UREP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|11269468|pir||B82879 pseudouridylate synthase I UU536 [imported] - Ureaplasma urealyticum gi|6899540|gb|AAF30949.1|AE002152_8 pseudouridylate synthase I [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827524|gb|ACA32786.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182676096|gb|EDT88001.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 241 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 + Y + + Y+GS ++GW RQ ++QG +E+ + + + G+GRTD GVHA Q Sbjct: 1 MNYKISLRYDGSLFYGWARQPQKRTVQGDLEEIFKSIFKINNIRIIGSGRTDKGVHAYEQ 60 Query: 61 VAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 ++ I+ +AL + + S I IL + VD FHA+++A ++Y Y I Sbjct: 61 TFSVKHSALKYDSHIIYQALCS--RTSSDIQILEVQKVDDSFHAQYNATSKTYQYVINDY 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + ++ + + A + VG HDF +F + + + IR I+ + Sbjct: 119 EF-DLFRNNYELFVNQKINDQKILEALELFVGEHDFKSFST--SELTMTIRRINWVKIKR 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI I + A FL +R V S K + + + L + LAP GL Sbjct: 176 DTHLI-IYINANGFLKNMVRMIVASCLDYAFNKISLAKIHELLIYPKKGASIKLAPACGL 234 Query: 240 YFDSVEY 246 Y V Y Sbjct: 235 YLYKVYY 241 >gi|328875656|gb|EGG24020.1| hypothetical protein DFA_06158 [Dictyostelium fasciculatum] Length = 403 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 88/258 (34%), Positives = 130/258 (50%), Gaps = 33/258 (12%) Query: 22 KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREW----------- 70 +NG SIQ +IE + + + + + G+ RTDSGV++L QVAH DL + Sbjct: 81 ENGRSIQYAIEHGLSHIMRQRIQIVGSSRTDSGVNSLCQVAHCDLPNQRYDKKGTIEQEQ 140 Query: 71 -VPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP---LAL 125 P I+ ALN LK + I I+++ VD +FH+R++A R+YLY+I+T P Sbjct: 141 LTPSIIKIALNQQLKRHNHDIRIVSVEKVDNEFHSRYNATSRTYLYKIMTGVRPTEVPLE 200 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--------DV 177 K + W I ++LD + M+ A L G HDF + RS CQA SPIR+I H D+ Sbjct: 201 LKNKVWPIWETLDIDQMKETASFLQGLHDFDSLRSAKCQAKSPIRSISHIKIIDLPLPDI 260 Query: 178 NSFGN---------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + N I + + RSFLH Q+R L +G G T +L++ ++ +DR Sbjct: 261 WRYNNDDSTPPKIQYIGLEIKGRSFLHNQVRIMSSCLAEIGRGHMTLDNLKEIMKGRDRT 320 Query: 229 ECGPLAPPEGLYFDSVEY 246 AP L V Y Sbjct: 321 LAPATAPAYPLTLVKVSY 338 >gi|332295380|ref|YP_004437303.1| tRNA pseudouridine synthase A [Thermodesulfobium narugense DSM 14796] gi|332178483|gb|AEE14172.1| tRNA pseudouridine synthase A [Thermodesulfobium narugense DSM 14796] Length = 283 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 13/254 (5%) Query: 1 MIR-------YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDS 53 M R II Y+G+ + G+Q Q ++Q IE+ + + E V V AGRTD+ Sbjct: 1 MPRSFSLKMDIAAIISYDGTNFHGFQMQNQSRTVQLVIEQKLEKIFKERVCVVPAGRTDA 60 Query: 54 GVHALRQVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA+ QV F L + + L LN +L D I I + ++ F++RFSA R Y Sbjct: 61 GVHAIGQVISFRLAKCPFDVEKLQNILNYHL--PDDIRISEMRLMPADFNSRFSAKSRVY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +Y I ++ A W + SL E+++ + R F +F + T+ Sbjct: 119 VYAISAKKDICAHLNRYFWNLDISL--EDLKATLNLIPNRFCFRSFSRVSKDRKLNFGTV 176 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 F + + + A SFL +R G V GK T D ++AL+ + R Sbjct: 177 TFSKCVVFEDFLYFIIEAPSFLWHTVRFLFGEAVAVAKGKRTLEDYKEALEGKKR-LVLY 235 Query: 233 LAPPEGLYFDSVEY 246 APP+GL+ V Y Sbjct: 236 KAPPKGLHLWGVSY 249 >gi|302851591|ref|XP_002957319.1| tRNA pseudouridine synthase [Volvox carteri f. nagariensis] gi|300257414|gb|EFJ41663.1| tRNA pseudouridine synthase [Volvox carteri f. nagariensis] Length = 226 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 103/224 (45%), Gaps = 6/224 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHALRQ 60 Y MI+ Y+G+ Y GWQ Q + ++Q +E A+ V E V G AGRTD+GVHA Q Sbjct: 5 YRMIVSYDGTAYCGWQLQPSAPTVQRFLEGALCTVLREERAVLGVRAAGRTDAGVHARGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F +E + LN+ L I +L +S F SA+ + Y Y I + Sbjct: 65 VVQFSCDKELDVTKMPYKLNSVL--PHDIRVLRMSRTAPDFSVTCSALGKCYRYSITNGE 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A + + LD MR AA L G HDF+ F +I + SP N Sbjct: 123 THDPLRHRYALHVRRHLDLAAMRSAAALLTGTHDFSQFSNIGEEGGSPDVQRRRRQRNPV 182 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 L + VV FL+ +R G L VG+GK + + + L+ Sbjct: 183 KTLRRVDVVEGNGFLYKMVRHISGVLVAVGEGKLQTKAVGRMLE 226 >gi|91215693|ref|ZP_01252663.1| putative tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] gi|91186159|gb|EAS72532.1| putative tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] Length = 224 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 3/225 (1%) Query: 23 NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 + S+Q + A+ E V V GAGRTD+GVHA VAHFD ++ + A Sbjct: 2 HEISVQSQVNLALKTALQETVDVVGAGRTDTGVHASGYVAHFDSSQKIFDFKML-AFKLN 60 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 + I++ ++ V FHARF AI R+Y Y II + P ++ GR++L+ L+ + M Sbjct: 61 SILPPDIAVQSVVGVKDDFHARFDAISRTYRYSIIQTKDPFSV--GRSYLVKNELNLQVM 118 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + A+ L +F +F + + I+ + G+ + + A FL +R+ V Sbjct: 119 QNASNLLFNHKNFKSFSKVKTDVYTFDCHIEKVEWQKEGHHLFFEITANRFLRNMVRAIV 178 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G+L VG K + + + A+DR + G P L +++Y Sbjct: 179 GTLIEVGLEKISVEEFNDIILAKDRSKAGKSVPAHALVLTNIKYP 223 >gi|171920141|ref|ZP_02931545.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701850|ref|ZP_02971512.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902508|gb|EDT48797.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701145|gb|EDU19427.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 241 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 + Y + + Y+GS ++GW RQ ++QG +E+ + + + G+GRTD GVHA Q Sbjct: 1 MNYKISLRYDGSLFYGWARQPQKRTVQGDLEEIFKSIFKINNIRIIGSGRTDKGVHAYEQ 60 Query: 61 VAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + ++ I+ +AL + + S I IL + VD FHA+++A ++Y Y I Sbjct: 61 IFSVKHSALKYDSHIIYQALCS--RTSSDIQILEVQKVDDSFHAQYNATSKTYQYVINDY 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + ++ + + A + VG HDF +F + + + IR I+ + Sbjct: 119 EF-DLFRNNYELFVNQKINDQKILEALELFVGEHDFKSFST--SELTMTIRRINWVKIKR 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI I + A FL +R V S K + + + L + LAP GL Sbjct: 176 DTRLI-IYINANGFLKNMVRMIVASCLDYAFNKISLAKIHELLIYPKKGASIKLAPACGL 234 Query: 240 YFDSVEY 246 Y V Y Sbjct: 235 YLYKVYY 241 >gi|197303254|ref|ZP_03168295.1| hypothetical protein RUMLAC_01977 [Ruminococcus lactaris ATCC 29176] gi|197297680|gb|EDY32239.1| hypothetical protein RUMLAC_01977 [Ruminococcus lactaris ATCC 29176] Length = 242 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + M ++Y+G+ Y GW + K+ ++ +E+ + + G+ V +H A RT+ VHA Sbjct: 1 MNNFKMTLQYDGTRYLGWTKNEKSVKTVSYKLEQVLTRLLGQPVTLHAAVRTEPCVHASC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F+ + P +L K +N YL I +L+L V +F A +Y Y + T Sbjct: 61 QVCSFEADLPFSPEVLKKQMNQYL--PMDIKVLSLLPVSGRFRADLGIRAYTYEYNVCTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + D M+ AA L+G+HDF +F + + + + + D Sbjct: 119 SVYDVFHSRYQAHFFPAPDLALMKQAASCLIGKHDFQSFSPVR-KKKGTKKELLYLDFIQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + R+ A +FL + + VG+L +G GK + + + + G P +GL Sbjct: 178 NKEQLSFRLTANAFLPSMPQLIVGTLLEIGQGKRSPDCILSIFEGNETP--GNFCPSDGL 235 Query: 240 YFDSVEY 246 + ++Y Sbjct: 236 FLTEIQY 242 >gi|283782782|ref|YP_003373536.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 409-05] gi|283442111|gb|ADB14577.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 409-05] Length = 305 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 127/286 (44%), Gaps = 42/286 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ V E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPTLRTVQGEIEGALHTVLRVPEGDSAEPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLK--ISDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + + AL LK + IS+ +S+ F ARF Sbjct: 61 VHASHQVCHLDVCEETLLRCVGHTGLDGVCALEYRLKHVLPQDISLHKVSVAPIGFDARF 120 Query: 106 SAIRRSYLYRIITR---QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 SA+ R+Y+YRI +G + LD + M AA+ ++G HDF +F + Sbjct: 121 SALERTYVYRICDASDYCDYDPRMRGFVLKLDDVLDVDAMNQAARLMIGLHDFGSFARPN 180 Query: 163 CQASSPIRTIDHFDVNSFG--------------------NLIEIRVVARSFLHTQIRSFV 202 + IR + G L+E +VA +F H +RS V Sbjct: 181 P-GGTTIRDVKSACWERVGTRANDVRVKLKTGCVPPVEQGLLEFTIVADAFAHNMVRSLV 239 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 + +G GK T + + R+ GP+AP +GL + V Y Sbjct: 240 QACVQIGCGKRTLDWFVEKINTPLREGSTGPIAP-QGLTLEYVAYP 284 >gi|118101049|ref|XP_417580.2| PREDICTED: similar to MGC80334 protein [Gallus gallus] Length = 291 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 134/276 (48%), Gaps = 31/276 (11%) Query: 2 IRYCMIIEYNGSGYFG-WQRQKN--GSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHA 57 RY + +Y G+ Y G Q G +Q +EKA + + H + RTDSGVHA Sbjct: 6 TRYLVFFQYWGTKYSGVMQTSAEQSGIGVQNYLEKAAQNLKPVVPIKFHISSRTDSGVHA 65 Query: 58 LRQVAHFDLVREWVPVILCKA-----LNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 L AH D+ R + LN +LK + I IL+ V FHARFSA+ R+Y Sbjct: 66 LCNSAHLDIQRAPGKPAFQERVLIGCLNHHLK-PEPIRILSAYRVTNNFHARFSALSRTY 124 Query: 113 LYRIITRQAP----LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQA-- 165 +YR++ E+ W P L+ M+ AAQ L+G HDF+TF S++ + Sbjct: 125 IYRLLMGCTHHSEIPVFERDLCWAPPGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETPF 184 Query: 166 SSPIRTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 SP++TI D+ E++ +RSFL+ Q+R VG+L VG GK Sbjct: 185 RSPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKL 244 Query: 214 TSTDLEKALQAQDRKE--CGPLAPPEGLYFDSVEYS 247 +++ L+ +D + +AP GL+ SVEY+ Sbjct: 245 APHHIKELLEMKDARAFPAFAMAPSSGLFLKSVEYN 280 >gi|171920798|ref|ZP_02931982.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179091|ref|ZP_02964822.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024013|ref|ZP_02996773.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518366|ref|ZP_03003873.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524280|ref|ZP_03004323.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867909|ref|ZP_03079907.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273508|ref|ZP_03206044.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554225|ref|YP_002284984.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550684|ref|ZP_03771633.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551354|ref|ZP_03772300.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|238057738|sp|B5ZC44|TRUA_UREU1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171903560|gb|EDT49849.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208984|gb|EDU06027.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019040|gb|EDU57080.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998036|gb|EDU67133.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659898|gb|EDX53278.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660386|gb|EDX53645.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250028|gb|EDY74808.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541726|gb|ACI59955.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379169|gb|EEH01534.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379838|gb|EEH02200.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 241 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 + Y + I Y+GS ++GW +Q ++Q +E + + + G+GRTD GVHA Q Sbjct: 1 MNYKISIRYDGSLFYGWAKQPQKRTVQEHLETVFKTIFKINDIKIIGSGRTDRGVHAYEQ 60 Query: 61 VAHF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V + P ++ +AL + +I + IL + V FHA+ AI ++Y Y I Sbjct: 61 VFSVNHHQLNYEPQVIYQALCS--QIDPDVQILKVQSVHDTFHAQHDAISKTYQYIINDY 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + I + ++ + + A + VG +DF +F + + R I+ + Sbjct: 119 EF-DLFKHNYEYFIHQKINDQKLLEALELFVGEYDFKSFST--SELPLTTRKINWVKITR 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L EI + FL +R + + K + T ++ L + LAPP GL Sbjct: 176 NTRL-EIYINGNGFLKNMVRMIISACIDYVFNKISLTQIKTLLTNPKKGASVKLAPPCGL 234 Query: 240 YFDSVEY 246 Y V Y Sbjct: 235 YLYKVYY 241 >gi|315636694|ref|ZP_07891924.1| tRNA pseudouridine synthase A [Arcobacter butzleri JV22] gi|315479009|gb|EFU69712.1| tRNA pseudouridine synthase A [Arcobacter butzleri JV22] Length = 240 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++ Y+GS + G Q+Q NG +++ + KA + + + +GRTD VH+ QV Sbjct: 1 MNLKFVVAYDGSLFQGSQKQPNGKTVENELLKAFENINIKT-QIVLSGRTDKEVHSSGQV 59 Query: 62 AHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + + W L + LN L +I I +S V++ FH+RFSA +R Y Y I T++ Sbjct: 60 FNCQIPSYWEDFFKLKEILNKNL--PTSIKIKKISKVEESFHSRFSAKKRVYRYLITTKE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + KS+D + ++ A + +G HDF F + R I + Sbjct: 118 T-TPFNDKFITYV-KSVDEKLLKKAIKEFIGVHDFKYFHKTGSDKENTNREIFDTKFYKY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ + A S+L +QIR VG L + D K T DL+K L + P+ P GLY Sbjct: 176 KDIYVFKFTANSYLRSQIRLMVGFLLAINDKKLTIEDLKKQLNCEKSIFKTPI-KPNGLY 234 Query: 241 FDSVEY 246 ++Y Sbjct: 235 LAKIKY 240 >gi|308178101|ref|YP_003917507.1| tRNA pseudouridylate synthase A [Arthrobacter arilaitensis Re117] gi|307745564|emb|CBT76536.1| tRNA pseudouridylate synthase A [Arthrobacter arilaitensis Re117] Length = 311 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 122/259 (47%), Gaps = 15/259 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R M++ Y+G+ Y GW RQ N +Q +E+A+ ++ V V AGRTD+GVHA RQV Sbjct: 26 RMRMVLGYDGAAYSGWARQPNVLGVQQLVEEALEMLIRRQVRVVVAGRTDAGVHARRQVV 85 Query: 63 HFDLVREW-----------VPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 HFDL E L + +N L + + + + F ARFSA+ R Sbjct: 86 HFDLTEEEYTSLPRKAPLAPGPALVRRINGILGRQDGAVWVHEAERAPEGFDARFSALAR 145 Query: 111 SYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y YRI Q L + + LD E M A+ ++GRHDF T+ A + I Sbjct: 146 RYSYRIADGQQRWDPLTRQLTTWHREELDVEAMNREARSVLGRHDFLTYCKPRPHA-TTI 204 Query: 170 RTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 RT+ F + + + + A +F H +R+ +G+ +VGDG+ L + L+ R Sbjct: 205 RTLQEFTFTRGADGLVLAHLKADAFCHNMVRALIGAAMMVGDGREQPGFLAERLELMVRD 264 Query: 229 ECGPLAPPEGLYFDSVEYS 247 L+ P L + V Y Sbjct: 265 SKTKLSHPRALVLEEVYYP 283 >gi|66811154|ref|XP_639285.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4] gi|60467961|gb|EAL65974.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4] Length = 343 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 137/301 (45%), Gaps = 55/301 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 RY +I EY G + G+QR K +Q +E ++ + G + + G+ RTD GV A+ Sbjct: 3 PRYKIIYEYIGKSFTGFQRLKYPVVKLPVQQVLEDSLEKIHGYKIPIVGSSRTDHGVSAV 62 Query: 59 RQVAHFDLVRE----------WVPVILCKALNAYLKIS--DTISILNLSIVDKQFHARFS 106 QV+HFD+ P L A+N + +I I+ IVD +FH RF+ Sbjct: 63 GQVSHFDVKTRTSKSGIEMPLLSPEELTMAINYNVGKEYLKSIRIIKTEIVDDKFHCRFN 122 Query: 107 AIRRSYLYRII--TRQAPLALEK-GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A R+YLYR++ + + LE R +L+ L+ + MR A++ +G HDF++FRS C Sbjct: 123 ATSRTYLYRVMANCGRKQIPLELLDRVYLVGPILNLDEMRKASEMFIGTHDFSSFRSAKC 182 Query: 164 QASSPIRTIDHFDVNSFG-------------------------------------NLIEI 186 ++ PIR+I H + I Sbjct: 183 SSTRPIRSISHIKIYDLPLPDIFQYNPSFQNISRSNTNYPIGDGEKNLDKKNTGLQYFGI 242 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + AR+FLH Q+R V SL VG+G+ + LE+ +DR P A PE L +V Y Sbjct: 243 EIKARAFLHNQVRIMVASLIKVGEGEISIQQLEEIKDKKDRGAAPPTASPEPLTLLTVSY 302 Query: 247 S 247 Sbjct: 303 D 303 >gi|118462566|ref|YP_883531.1| tRNA pseudouridine synthase A [Mycobacterium avium 104] gi|254776828|ref|ZP_05218344.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp. avium ATCC 25291] gi|118163853|gb|ABK64750.1| tRNA pseudouridine synthase A [Mycobacterium avium 104] Length = 251 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 14/232 (6%) Query: 29 GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---------- 78 G +++A+ V V + AGRTD+GVHA QVAH D+ +P +A Sbjct: 3 GVLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGP 62 Query: 79 --LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPK 135 + + +++++ F ARFSA+RR Y+YR+ T L + P+ Sbjct: 63 LLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPR 122 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 LD E M A++ L+G HDF F H + ++ IR + D G+LI RV A +F Sbjct: 123 PLDVEAMAAASRDLLGLHDFAAFCR-HRENATTIRDLQRLDWTRDGDLIIARVSADAFCW 181 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +RS VG+L VG+ + + + L A +R AP GL V+Y Sbjct: 182 SMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYP 233 >gi|224438205|ref|ZP_03659140.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] gi|313144651|ref|ZP_07806844.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] gi|313129682|gb|EFR47299.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] Length = 245 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I Y+GS ++G+ QK+ S+ G+++ V G + G RTD GVH+ Q Sbjct: 1 MPRYKAVISYDGSAFYGFALQKHKPSVLGALQDGFSRV-GIRGEILGTSRTDKGVHSTGQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F+ L LNA L I++ L V++ FH RF A+ R+Y + + + Sbjct: 60 VISFESRHFEDSHTLQNLLNAKLYPH--IAVRRLERVNEDFHPRFHALWRAYRFLLSSH- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + K + + A G+H+F F+ IR I Sbjct: 117 APSPFQSAYVS-YEKIGNRALFQSALSMFKGKHNFALFKKNGSFTKDSIRDIFRIFSYQH 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L + + FL +Q+R VG+ V G+ + L++ +QA+ R P++P GLY Sbjct: 176 KGLDIVYIKGNGFLRSQVRLMVGAALSVSRGELSLESLQEQIQAKKRHYNFPISP-NGLY 234 Query: 241 FDSVEYS 247 V YS Sbjct: 235 LCGVGYS 241 >gi|41410333|ref|NP_963169.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp. paratuberculosis K-10] gi|51316707|sp|Q73S41|TRUA_MYCPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41399167|gb|AAS06785.1| TruA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 251 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 14/232 (6%) Query: 29 GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---------- 78 G +++A+ V V + AGRTD+GVHA QVAH D+ +P +A Sbjct: 3 GVLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGP 62 Query: 79 --LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPK 135 + + +++++ F ARFSA+RR Y+YR+ T L + P+ Sbjct: 63 LLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPR 122 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 LD E M A++ L+G HDF F H + ++ IR + D G+LI RV A +F Sbjct: 123 PLDVEAMAAASRDLLGLHDFAAFCR-HRENATTIRDLQRLDWTRDGDLITARVSADAFCW 181 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +RS VG+L VG+ + + + L A +R AP GL V+Y Sbjct: 182 SMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYP 233 >gi|317498140|ref|ZP_07956442.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316894617|gb|EFV16797.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 206 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 1 MIR-YCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + IEY+GS Y GWQR N ++IQG +E + +TGE V ++G+GRTD+GVH Sbjct: 1 MKRNIRLTIEYDGSRYQGWQRLGGDSNANTIQGKLESVLSKMTGEDVNINGSGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QVA+F + L YL I I+ +S ++FH+R +A ++YLYRI Sbjct: 61 AYGQVANFHTDCMMSVNEIKNYLTKYL--PSDIGIVEVSEASERFHSRLNAKEKTYLYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 E+ W P++LD + M AA L+G HDF F SI S +RTI + + Sbjct: 119 AIPGVSNVFERKYLWYFPETLDIKKMEEAASLLIGTHDFKGFSSIKKTKKSTVRTIYNIE 178 Query: 177 VNSFG-------NLIEIRVVARSFL 194 + + + FL Sbjct: 179 IKKTKKKSRSLIQEMASFITWSGFL 203 >gi|91773587|ref|YP_566279.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242] gi|121691685|sp|Q12VJ7|TRUA_METBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91712602|gb|ABE52529.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242] Length = 275 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 25/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + I Y GS + G Q Q N +++G + K + + +GRTDSGVHA Sbjct: 1 MRVALKIAYIGSNFHGSQVQLNDPTVEGELFKVLKELGIMEDPRTANFISSGRTDSGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + QV FD + + + +N+ L TI +IV + F R A+ RSY Y + Sbjct: 61 MGQVVAFDTDA--PNLAMPRVINSKL--PGTIWAWAHAIVPENFDPRRHALSRSYRYIL- 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D +R A++ L+G HDF+ F + +R + D+ Sbjct: 116 ---------------YGEQFDISKIRSASKLLLGSHDFSNFSTSRGSKK-TVRIVKRIDI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GNL I V A SFL +R V +L +VG G L L + +E A Sbjct: 160 RVSGNLTRIDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLDPESYEEGLEPAHGY 219 Query: 238 GLYFDSVEYS 247 GL V Y Sbjct: 220 GLVLMDVNYP 229 >gi|224119986|ref|XP_002331109.1| predicted protein [Populus trichocarpa] gi|222872837|gb|EEF09968.1| predicted protein [Populus trichocarpa] Length = 326 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 128/319 (40%), Gaps = 73/319 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 6 QRYLVAVEYIGTRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNV 65 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ KA+N +L+ + I + ++ V FHARF A Sbjct: 66 CHVDVERISKRKPGEVLPPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVSAHFHARFKAQE 125 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLV------------------ 150 R+Y YR++ EK RAW + + LD +M+ A + LV Sbjct: 126 RTYFYRLLIGPELLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSP 185 Query: 151 --------------------------------GRHDFTTFRSIH----------CQASSP 168 G H F S Sbjct: 186 FRTLEELSVLEVVSTPYFPSITEREQNSSNGEGPHSFHNKCKTGLPTGSISNGFMAGGSN 245 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 T F + I +RSFL+ Q+R VG LK VG G T +D+E+ L A+ Sbjct: 246 SGTDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSIT 305 Query: 229 ECGPLAPPEGLYFDSVEYS 247 P+AP GLY V+Y Sbjct: 306 AASPMAPACGLYLGHVKYE 324 >gi|238061092|ref|ZP_04605801.1| tRNA-pseudouridine synthase I [Micromonospora sp. ATCC 39149] gi|237882903|gb|EEP71731.1| tRNA-pseudouridine synthase I [Micromonospora sp. ATCC 39149] Length = 276 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 109/251 (43%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q ++ G + + LV G V + AGRTD+GVHA Sbjct: 5 VRLRLTVAYDGTNFSGWAAQPARRTVAGVLTGTLDLVLGAGVATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPAAVWREHEGRLLRRLARLLPTDVRVRAMTEVPADFDARFSATFRRYEYRVTD 124 Query: 119 RQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + PK LD + AA LVG HDF + + ++ +R + D Sbjct: 125 APFGAEPLRRHEVLAWPKPLDPALLNAAAAGLVGEHDFAAYCRRK-ENATTLREVTRLDW 183 Query: 178 NSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G L+ V A +F +RS VG++ + GDG+ L ++R +AP Sbjct: 184 RRDPGGLLVATVQADAFCQAMVRSLVGAMLVAGDGRRPVDWPGSLLTRRERSSEVTVAPA 243 Query: 237 EGLYFDSVEYS 247 GL +V Y Sbjct: 244 HGLTLVAVGYP 254 >gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT] gi|121692939|sp|A0B7V0|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT] Length = 267 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 22/246 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I Y G Y+G+QRQ +++ + A+ + AGRTD GV AL QV Sbjct: 1 MKIALKIAYLGDRYYGFQRQPGLRTVESVMRDALLRIGVANGDFCYAGRTDRGVSALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + + + + +N+ L + ++ F AR+SA+ R Y Y + Sbjct: 61 IDFWIEEDRAYLAFPRVINSLL--PSDVWAWARAVAPVGFSARWSALWREYRYFL----- 113 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +D +R AA HLVG HDF F +R I DVN+ Sbjct: 114 -----------FSPDIDLSAVREAAGHLVGTHDFRNFSMSKVD---TVRRIISIDVNAHC 159 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ V A F+ +R VG+L+L+G G+ + + L P APPEGL Sbjct: 160 GIVVFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLDPSTPHGA-PTAPPEGLML 218 Query: 242 DSVEYS 247 V YS Sbjct: 219 MDVGYS 224 >gi|330790485|ref|XP_003283327.1| hypothetical protein DICPUDRAFT_25596 [Dictyostelium purpureum] gi|325086752|gb|EGC40137.1| hypothetical protein DICPUDRAFT_25596 [Dictyostelium purpureum] Length = 323 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 89/290 (30%), Positives = 128/290 (44%), Gaps = 45/290 (15%) Query: 2 IRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 RY + EY G + GWQR N +Q +E ++ + + + V G+ RTDSGV AL Sbjct: 3 PRYKITYEYVGKYFTGWQRLTYDINPLPVQNVLENSLKHICNKEIKVFGSSRTDSGVSAL 62 Query: 59 RQVAHFDLVRE----------WVPVILCKALNAYLKIS--DTISILNLSIVDKQFHARFS 106 +HFD+ + L A+N + D + I+ IVD FH+RF Sbjct: 63 GNTSHFDIDQRTSRKGKPLPLLTTDELTMAINYNVGEQYLDRVRIIKTEIVDDNFHSRFH 122 Query: 107 AIRRSYLYRII--TRQAPLALEK-GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A R+YLY+I+ + LE R I LD M+ AA+ LVGRHDF++FRS C Sbjct: 123 ATSRTYLYKILANCGKKQTPLELLDRVLEISFILDVNKMKEAAEILVGRHDFSSFRSKDC 182 Query: 164 QASSPIRTIDHFDVNSFG--------------------------NLIEIRVVARSFLHTQ 197 +P+RTI++ + I I + A+SFLH Q Sbjct: 183 -TKNPVRTIEYIKIIELPTPEIIRYHPDFINCSKEINNNVNHGLQYIGIEIKAQSFLHNQ 241 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +R +L VG G T L++ L+ +DR E L V Y Sbjct: 242 VRIMSSALIEVGKGTITKDQLKEILEKKDRLAAPSTIASEPLTLIKVSYD 291 >gi|157738399|ref|YP_001491083.1| tRNA pseudouridine synthase A [Arcobacter butzleri RM4018] gi|157700253|gb|ABV68413.1| tRNA pseudouridine synthase A [Arcobacter butzleri RM4018] Length = 240 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++ Y+GS + G Q+Q NG +++ + KA + + + +GRTD VH+ QV Sbjct: 1 MNLKFVVAYDGSLFQGSQKQPNGKTVENELLKAFENINIKT-QIVLSGRTDKEVHSSGQV 59 Query: 62 AHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + + W L + LN L +I I +S VD+ FH+RFSA +R Y Y I T++ Sbjct: 60 FNCQIPSYWEDFFKLKEILNKNL--PTSIKIKKISKVDESFHSRFSAKKRVYRYLITTKE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + KS+D + ++ A + +G HDF F + R I + Sbjct: 118 T-TPFNDKFITYV-KSVDEKLLKKAIKEFIGIHDFKYFHKTGSDKENTNREIFDTKFYKY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ + A S+L +QIR VG L + D K T DL K L + P+ P GLY Sbjct: 176 KDIYVFKFTANSYLRSQIRLMVGFLLAINDKKLTIEDLRKQLNCEKIIFKTPI-KPNGLY 234 Query: 241 FDSVEY 246 ++Y Sbjct: 235 LAKIKY 240 >gi|261338249|ref|ZP_05966133.1| tRNA pseudouridine synthase A [Bifidobacterium gallicum DSM 20093] gi|270276903|gb|EFA22757.1| tRNA pseudouridine synthase A [Bifidobacterium gallicum DSM 20093] Length = 313 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 120/286 (41%), Gaps = 41/286 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVT------GEIVVVHGAGRTD 52 M+R + + Y+G + GW Q N ++QG IE+A+ + + + AGRTD Sbjct: 1 MVRLRIDLAYDGFSFNGWAVQPQSNIRTVQGEIEQALARLLHDGNEPDYVPRLTVAGRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVIL-------CKALNAYL--KISDTISILNLSIVDKQFHA 103 +GVHA QV H D+ + + KAL L + D I+I +S + F A Sbjct: 61 AGVHASHQVCHLDVTEPMLDACVGHMRVEPVKALETRLSRMMPDDIAIHRVSFAPEGFDA 120 Query: 104 RFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R+Y+YRI + W L+ + M AA +G HDF +F + + Sbjct: 121 RFSALERTYVYRISDAATDYDPRQLSYVWHTDHLLNMDAMNEAAALTLGLHDFGSFATPN 180 Query: 163 CQASSPIRTIDHFDVNSFG--------------------NLIEIRVVARSFLHTQIRSFV 202 + IR + + L+ +VA +F +RS V Sbjct: 181 P-GGTTIREVKTAYWSRIPTRPLIANPMGERYHTPAIESGLLCFTIVADAFARNMVRSLV 239 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 + VG GK + R+ GP+AP +GL + V Y Sbjct: 240 NACVQVGLGKRDVAWFAHKMAVPLREGSTGPIAP-QGLTLEHVAYP 284 >gi|224373193|ref|YP_002607565.1| tRNA pseudouridine synthase A [Nautilia profundicola AmH] gi|223588941|gb|ACM92677.1| tRNA pseudouridine synthase A [Nautilia profundicola AmH] Length = 223 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 103/229 (44%), Gaps = 6/229 (2%) Query: 18 WQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK 77 Q+Q + ++QGSIE A+ + V AGRTD GVHAL QV F L W L Sbjct: 1 MQKQPDKITVQGSIENALKRLNI-NSDVLHAGRTDRGVHALNQVVSFKLPSFWNQNKLLT 59 Query: 78 ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL 137 LN L + I I V+ F+ RF A +RSY Y + P + Sbjct: 60 ELNKILHPN--IHIKKFYNVNDDFNPRFDAKKRSYRYIL--NPNFNPFSANYTTYYPHKI 115 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 + ++ A + G HDF F ++ IR I DV + N I++V FL Q Sbjct: 116 NISLLKKALKEFEGIHDFEYFAKTGSDVNNYIREIYKTDVYKYKNFTVIKIVGNGFLRAQ 175 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 IR V + + + K T DL+K L ++ LAPP GLY D + Y Sbjct: 176 IRLIVDFVLKINENKLTVQDLQKQL-SKQELISKHLAPPNGLYLDRIWY 223 >gi|184200291|ref|YP_001854498.1| tRNA pseudouridine synthase TruA [Kocuria rhizophila DC2201] gi|183580521|dbj|BAG28992.1| tRNA pseudouridine synthase TruA [Kocuria rhizophila DC2201] Length = 331 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 76/306 (24%), Positives = 123/306 (40%), Gaps = 61/306 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW RQ S+Q ++E A+ LV AGRTD+GVHA Q Sbjct: 8 VRLRIDLAYDGAPFRGWARQPGLPSVQEAVEDALCLVFRVRCPTVVAGRTDTGVHARSQT 67 Query: 62 AHFDLVREWVPVI--------------------------------------------LCK 77 H D+ RE + L + Sbjct: 68 VHVDVPREAWERVTRSRGTGRVAGALPASPDPAHASAPAATTGTVAASDARGPVDPVLAR 127 Query: 78 ALNAYLK--ISDTISILNLSI------------VDKQFHARFSAIRRSYLYRIITRQA-P 122 LN L + + F ARFSA+ R+Y YR+ + Sbjct: 128 RLNGALNRVLGKDRADRGWEPVVGAVVVQSVAQAPPGFDARFSALSRAYRYRVADARTGH 187 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + +W + LD M A + L+G HDF ++ ++ +R + V+ + Sbjct: 188 DPLTRTFSWWVDPQLDVAAMDGAVRELLGLHDFLSYCKPRA-GATTVRELQRATVDRDEH 246 Query: 183 -LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +F H +RS VG+L VG+G+ + + L+A+ R +AP GL Sbjct: 247 GMITVALTADAFCHHMVRSVVGALVRVGEGRHGPSWPGERLRARTRDAAIVMAPAHGLVL 306 Query: 242 DSVEYS 247 D+V Y Sbjct: 307 DAVAYP 312 >gi|206602902|gb|EDZ39382.1| Pseudouridylate synthase [Leptospirillum sp. Group II '5-way CG'] Length = 268 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 114/253 (45%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+G G+ GWQ Q G+++Q IE+A +T + V + G+GRTD+GV A Q Sbjct: 1 MQRFAFVVSYDGRGFQGWQSQIRGNAVQDHIEEAFCRLTRQDVRISGSGRTDTGVSAAGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL W P L + LN +L S I IL + V FHAR +R+ Y YR ++R Sbjct: 61 VFHCDLAGPGWTPDSLSRGLNHFL--SPAIRILQAAAVAPDFHARHDVVRKIYRYRWVSR 118 Query: 120 QAPL----ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + E + ++ A + L G +DFT F RTID Sbjct: 119 SRKMREVGPTEDPFCGTFLPPVHWTLLQQATKLLEGSNDFTRFTVQKSCPEDARRTIDAI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPL 233 + +++ V R FLH IR +L G K + + L Sbjct: 179 QWIAGPYTLDLWVAGRGFLHMMIRYLAMALLETGQQKRSLKSFQDLLLTGSLPPVPALHP 238 Query: 234 APPEGLYFDSVEY 246 APP+GL V Y Sbjct: 239 APPQGLSLVRVLY 251 >gi|119963259|ref|YP_948625.1| tRNA pseudouridine synthase A [Arthrobacter aurescens TC1] gi|119950118|gb|ABM09029.1| tRNA pseudouridine synthase A [Arthrobacter aurescens TC1] Length = 296 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 118/263 (44%), Gaps = 19/263 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G + GW Q ++QGS+E+A+ L+ V V AGRTD+GVHA QV Sbjct: 18 RVRLDLSYDGGPFSGWALQPGLRTVQGSLEEALALLLQRPVRVTVAGRTDAGVHARGQVV 77 Query: 63 HFD-LVREW----------VPVILCKALNAYL-----KISDTISILNLSIVDKQFHARFS 106 H D EW V L + L L ++ +I + + + + F ARFS Sbjct: 78 HLDLTEAEWLSLPRGHELDPAVALLRRLRGALSRILGDLTGSIEVHDAGLAPEGFDARFS 137 Query: 107 AIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI + +G L+ E M A L+G DF ++ + Sbjct: 138 ALWRRYSYRIADGPERWDPVLRGITLWHKAPLNVELMNEGAFALLGLQDFRSYCKPR-EG 196 Query: 166 SSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ IR + F + ++I V A +F H +RS VGS VG+G T L L Sbjct: 197 ATTIRELQQFSFDRGSDDVIVATVQADAFCHNMVRSLVGSALRVGEGLETPGWLHSRLLE 256 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + R LA P L + V Y Sbjct: 257 RKRDAKSVLAAPHPLVLEEVAYP 279 >gi|240103716|ref|YP_002960025.1| tRNA pseudouridine synthase A [Thermococcus gammatolerans EJ3] gi|259550472|sp|C5A7E9|TRUA_THEGJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239911270|gb|ACS34161.1| tRNA-pseudouridine synthase A (truA) [Thermococcus gammatolerans EJ3] Length = 267 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 26/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 ++ + I Y+G+ ++G+QRQ +++G + + + + E GA RTD GV A Sbjct: 1 MKLALRIAYDGTAFYGFQRQPGIRTVEGELINVLTKLKIIESPEKNDFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V F + E + + LN L + +L ++ V FH RF AI ++Y Y Sbjct: 61 FFNVVSF-VPGERADLARPEVLNHNLH---DLWVLGVAEVPDDFHPRFWAISKTYRY--- 113 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +LI + + E M A+ GRHDF+ F + P+R I H + Sbjct: 114 -------------YLIDEGFELEKMVGCAKLFEGRHDFSAFARLEP-GRDPVREITHISI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I + +SFL +R V +L+ G ++ L + ++ P APPE Sbjct: 160 TPRHGYYVIEITGKSFLWEMVRRIVNALRFCGLSLLEPEEVGAML-SGVYEKKVPPAPPE 218 Query: 238 GLYFDSVEYS 247 L +EY Sbjct: 219 NLILWHIEYP 228 >gi|118616627|ref|YP_904959.1| tRNA pseudouridine synthase A [Mycobacterium ulcerans Agy99] gi|118568737|gb|ABL03488.1| pseudouridine synthase a, TruA [Mycobacterium ulcerans Agy99] Length = 260 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 14/240 (5%) Query: 21 QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV------------R 68 Q ++ G +++A+ V V + AGRTD+GVHA QVAH D+ R Sbjct: 2 QTGQRTVAGVLDEALTTVLRTPVRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSAR 61 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEK 127 P L + + +L+++ F ARFSA+RR Y+YR+ T + + Sbjct: 62 AGDPEFLPLVRRLARFLPADLRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQA 121 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + P+ LD + M +A+Q L+G H+F F + ++ IR + D + G+L+ + Sbjct: 122 RYVTVWPRELDIDAMTVASQELLGLHNFAAFCRRR-EGATTIRDLQRLDWSRNGHLVTAQ 180 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V A +F + +RS VG+L VG+ + T + L A R AP GL V+Y Sbjct: 181 VSADAFCWSMVRSLVGALLAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYP 240 >gi|312892081|ref|ZP_07751581.1| tRNA-pseudouridine synthase I [Mucilaginibacter paludis DSM 18603] gi|311295453|gb|EFQ72622.1| tRNA-pseudouridine synthase I [Mucilaginibacter paludis DSM 18603] Length = 268 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ+ SIQ +E ++ V + G GRTD+ VHA + Sbjct: 1 MRYFVHLGYHGTQYSGWQKHAGVMSIQQVLENSLSQVLKTPTAIVGCGRTDAKVHASQFF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ L LN L I+I ++ + HARF A +RSY Y I T + Sbjct: 61 FHVDIDNPR-EFDLLFRLNKIL--PADIAIFDIIPMAGLPHARFDATQRSYDYFIHTYKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--S 179 P L ++ +SLD M+ A L HD+ F + + + ++ Sbjct: 118 PF-LNGFSSYYNEQSLDLHEMKKAVALLPLYHDYRAFCKSPDRNEHTLCHVTSAELFACK 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + A FL IR VG L +G G+ + + E+ L + A P+GL Sbjct: 177 NADRIRFNISANRFLSKMIRVIVGRLISIGTGEMSVDEFEQNLIKPQNAQTISPAHPQGL 236 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 237 YLSKVTYP 244 >gi|99034196|ref|ZP_01314273.1| hypothetical protein Wendoof_01000930 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 166 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 85/167 (50%), Positives = 115/167 (68%), Gaps = 2/167 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE V ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E+ + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKEFELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 AP ALE G W + LD MR AA+HL+G+HD ++FRS CQA++ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCQAAN 166 >gi|148273765|ref|YP_001223326.1| tRNA pseudouridine synthase A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831695|emb|CAN02664.1| putative tRNA pseudouridine synthase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 334 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 123/279 (44%), Gaps = 34/279 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 R + I Y+G+G+ GW +Q ++QG++E A+ + + AGRTD+GVHA Sbjct: 12 TRLRLDIAYDGTGFAGWAKQPGLRTVQGALEDALAQLLARTPPAPTLVVAGRTDAGVHAT 71 Query: 59 RQVAHFDLVREWVP----------------------------VILCKALNAYLKISDTIS 90 QVAH DL E + L + LN L + Sbjct: 72 GQVAHLDLTDEQIASLDRPPRGRAAAADAGEGAHVPSVDRAAAALARRLNGVLGARSDVV 131 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHL 149 +L + F ARFSA R+Y YRI P L++ R +P +LD ++ AA L Sbjct: 132 VLACAPAPDGFDARFSATWRAYRYRISDVDGPRDPLQRHRTVELPVALDAAVLQEAADAL 191 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLV 208 +G HDF + + +S IRT+ + +E V A +F H+ +R+ VG+ Sbjct: 192 LGLHDFAAYCKPR-EGASTIRTLQELTWTRASDGALEATVRADAFCHSMVRALVGACVAA 250 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G+ T L + L+ ++R + P GL + V Y Sbjct: 251 ASGRVGVTRLRELLELRERTSEFTVMPARGLVLERVGYP 289 >gi|283455394|ref|YP_003359958.1| 50S ribosomal protein L17 [Bifidobacterium dentium Bd1] gi|283102028|gb|ADB09134.1| rplQ 50S ribosomal protein L17 [Bifidobacterium dentium Bd1] Length = 296 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 120/282 (42%), Gaps = 46/282 (16%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSGVHALRQ 60 + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+GVHA Q Sbjct: 1 MAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTGVHASHQ 60 Query: 61 VAHFDLVREW-----------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 V H D+ V L + L L + I+I ++ + F ARFSA+ Sbjct: 61 VCHLDISETILARCVGHMNVPPVVALTRRLQRML--PNDITIHGINEAPQGFDARFSALE 118 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y+YRI R + +G + LD E M AA +G HDF +F + + + Sbjct: 119 RTYVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNP-GGTT 177 Query: 169 IRTIDHFDVNSFGN----------------------LIEIRVVARSFLHTQIRSFVGSLK 206 IR + L +VA +F +RS V Sbjct: 178 IREVKTAYWRRIPQRPLVDGEMTMGERYRTPSMESGLACFTIVADAFARNMVRSLVNGCV 237 Query: 207 LVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK + + R+ GP+AP +GL + +EY Sbjct: 238 QVGIGKRSLDWFADKMATPLREGSTGPIAP-QGLTLEHIEYP 278 >gi|224283738|ref|ZP_03647060.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] Length = 298 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 121/281 (43%), Gaps = 40/281 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSGVHA 57 + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+GVHA Sbjct: 2 RIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHA 61 Query: 58 LRQVAHF---------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 QV H + VP + + I+I ++++ F ARFSA+ Sbjct: 62 SHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARFSAL 121 Query: 109 RRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y+YR+ R + +G + LD M AA +G HDF +F + + + Sbjct: 122 ERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNP-GGT 180 Query: 168 PIRTIDHFDVNSFG--------------------NLIEIRVVARSFLHTQIRSFVGSLKL 207 IR + +L+ +VA +F +RS VG Sbjct: 181 TIREVKTAYWRRIPTRPLVVDGVGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQ 240 Query: 208 VGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK ++ + + R+ GP+AP +GL + V Y Sbjct: 241 VGMGKRSTDWFREKMAVPLREGSTGPIAP-QGLTLEHVAYP 280 >gi|88603643|ref|YP_503821.1| tRNA pseudouridine synthase ACD [Methanospirillum hungatei JF-1] gi|88189105|gb|ABD42102.1| tRNA pseudouridine synthase A [Methanospirillum hungatei JF-1] Length = 276 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 27/247 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R I Y G+ +FG Q Q + +++G IE A + ++ + +GRTD GVHA Sbjct: 11 VRLAFRIGYIGTSFFGSQYQPDQRTVEGEIEAACLRAGIITSRQVSRLALSGRTDRGVHA 70 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ P + +ALN L I + + + F+ R+ I R+Y Y Sbjct: 71 KCQILALST---HNPDLAVRALNGQL--PPDIWVSAWAYAPESFYPRYDVIIRTYRY--- 122 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D MR AA +G HDF F I SP++TID +V Sbjct: 123 -------------YFSRPPSDINAMRDAAGLFLGTHDFRCFARIEP-GKSPVKTIDRIEV 168 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S N + V A+SFL +R GSL V +G+ DL + L+ + + + P APPE Sbjct: 169 ISDENGCRLEVTAQSFLWHMVRCMAGSLYQVSEGEMAIRDLTQYLKGECKNKVKP-APPE 227 Query: 238 GLYFDSV 244 GL V Sbjct: 228 GLILWDV 234 >gi|213622844|ref|ZP_03375627.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 188 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 2/173 (1%) Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +NA L I++ + V FHARFSA R Y Y I + A+ Sbjct: 1 WTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYY 58 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + + A +F+ Sbjct: 59 EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFV 118 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 119 HHMVRNIVGSLLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDYP 171 >gi|242310521|ref|ZP_04809676.1| tRNA pseudouridine synthase A [Helicobacter pullorum MIT 98-5489] gi|239522919|gb|EEQ62785.1| tRNA pseudouridine synthase A [Helicobacter pullorum MIT 98-5489] Length = 241 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 111/250 (44%), Gaps = 14/250 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ M I YNG+ + G+Q+QK+ S+ G +E+ V G + G+GRTD GVHA Q Sbjct: 2 MMKVAMKIAYNGANFCGFQKQKDRQSVSGFLEEVFGSV-GIFEKIIGSGRTDKGVHASAQ 60 Query: 61 VAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V + L + LN LK+ + I + VD FHARF A RR Y Y I Sbjct: 61 VISLKIPDFHKDLQKLQEILN--LKLYPLVKIKKIWRVDDDFHARFDAKRRGYCYVISQE 118 Query: 120 QAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFD 176 +P + + ++ A + G H+F F A +R I Sbjct: 119 YSPFIAPFAHYYCFQ-----NVGIIKEALREFEGLHNFKAFMKNDGSGAKGSVREIYKAR 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G FL +QIR VG L + G +DL+K L +R P APP Sbjct: 174 LLKRGKFYIFLFWGNGFLRSQIRLMVGYLLEIDKGNLQISDLKKQLLG-ERIFSIP-APP 231 Query: 237 EGLYFDSVEY 246 GL+ SV+Y Sbjct: 232 NGLFLSSVKY 241 >gi|306823540|ref|ZP_07456915.1| tRNA pseudouridine synthase A [Bifidobacterium dentium ATCC 27679] gi|304553247|gb|EFM41159.1| tRNA pseudouridine synthase A [Bifidobacterium dentium ATCC 27679] Length = 296 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 120/282 (42%), Gaps = 46/282 (16%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSGVHALRQ 60 + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+GVHA Q Sbjct: 1 MAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTGVHASHQ 60 Query: 61 VAHFDLVREW-----------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 V H D+ V L + L L + I+I ++ + F ARFSA+ Sbjct: 61 VCHLDVSETILARCVGHMDVPPVVALTRRLQRML--PNDITIHGINEAPQGFDARFSALE 118 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y+YRI R + +G + LD E M AA +G HDF +F + + + Sbjct: 119 RTYVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNP-GGTT 177 Query: 169 IRTIDHFDVNSFGN----------------------LIEIRVVARSFLHTQIRSFVGSLK 206 IR + L +VA +F +RS V Sbjct: 178 IREVKTAYWRRIPQRPLIDGEMTMGERYHTPSMESGLACFTIVADAFARNMVRSLVNGCV 237 Query: 207 LVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK + + R+ GP+AP +GL + +EY Sbjct: 238 QVGIGKRSLDWFADKMATPLREGSTGPIAP-QGLTLEHIEYP 278 >gi|310287995|ref|YP_003939254.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum S17] gi|309251932|gb|ADO53680.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum S17] Length = 298 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 121/281 (43%), Gaps = 40/281 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSGVHA 57 + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+GVHA Sbjct: 2 RIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHA 61 Query: 58 LRQVAHF---------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 QV H + VP + + I+I ++++ F ARFSA+ Sbjct: 62 SHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARFSAL 121 Query: 109 RRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y+YR+ R + +G + LD M AA +G HDF +F + + + Sbjct: 122 ERTYVYRVADRASEVDPRLRGFVLHLDADLDVVAMNEAAAMTIGLHDFGSFATPNP-GGT 180 Query: 168 PIRTIDHFDVNSFG--------------------NLIEIRVVARSFLHTQIRSFVGSLKL 207 IR + +L+ +VA +F +RS VG Sbjct: 181 TIREVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQ 240 Query: 208 VGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 VG GK ++ + + R+ GP+AP +GL + V Y Sbjct: 241 VGMGKRSTDWFREKMAVPLREGSTGPIAP-QGLTLEHVAYP 280 >gi|269925860|ref|YP_003322483.1| tRNA pseudouridine synthase A [Thermobaculum terrenum ATCC BAA-798] gi|269789520|gb|ACZ41661.1| tRNA pseudouridine synthase A [Thermobaculum terrenum ATCC BAA-798] Length = 240 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 107/250 (42%), Gaps = 17/250 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G + G Q Q ++Q +E A VTG AGRTD+GV AL Q Sbjct: 1 MSTWKLVISYKGEYFSGSQIQPGKRTVQEELENAWEKVTGSRCRAVLAGRTDAGVSALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA P L + L YL I I + V F AR SAI R Y Y + Sbjct: 61 VATIKADWPGTPEELLEKLRKYLT--QGIEIRKVERVSDNFDARKSAIWRRYRYVFSKDE 118 Query: 121 -APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFD-- 176 A + E+MR AA+ LVG DF F S +R I + Sbjct: 119 IARFGF-----------ISVESMRQAARALVGEKDFAAFASQSELGPRGTVRRILDINVI 167 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N + I +VA +FL +R V +L VG GK +L +A++ + R+ AP Sbjct: 168 WDKAANNLCIEIVADAFLRQMVRRIVSALIWVGTGKIEVVELLRAVEIKARQLLPGPAPA 227 Query: 237 EGLYFDSVEY 246 + L V Y Sbjct: 228 KNLTLVEVGY 237 >gi|147919589|ref|YP_686671.1| tRNA pseudouridine synthase A [uncultured methanogenic archaeon RC-I] gi|121687867|sp|Q0W2P8|TRUA_UNCMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110622067|emb|CAJ37345.1| tRNA pseudouridine synthase [uncultured methanogenic archaeon RC-I] Length = 266 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 24/248 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 ++ + I Y G+ ++G Q Q +++ + KA+ + AGRTD+GVHAL Sbjct: 1 MKTALKIAYVGTNFYGSQAQPGLPTVESELRKALEEAGAIKLGTKIAMAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F+ + + +N+ L + + V F R A R Y Y + Sbjct: 61 QVVAFEQAD--PKLTAPRIINSKL--PKDLWAYARAEVPDDFDPRRHATSREYRYILY-- 114 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AP +E+ ++ + +G HDFT F S+ P+RT+ D+ Sbjct: 115 -APDVIER-------------RLKECSSRFLGTHDFTNFSSVEA-GKYPVRTVTRLDIAK 159 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I + A SFL +R V +L+LVG+ K +EK + R+ P AP GL Sbjct: 160 RGDFYIIDIEADSFLWNMVRKIVTALRLVGENKRPDGWIEKMFDPEYREGIPPAAPG-GL 218 Query: 240 YFDSVEYS 247 Y V Y Sbjct: 219 YLSRVNYD 226 >gi|322378343|ref|ZP_08052800.1| tRNA pseudouridine synthase A [Helicobacter suis HS1] gi|321149229|gb|EFX43672.1| tRNA pseudouridine synthase A [Helicobacter suis HS1] Length = 244 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 10/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +++ Y+GS + G+ +Q +++G + KA+ + + AGRTD GVHA Q Sbjct: 1 MRRFKLVLAYDGSAFSGFAKQAGLYTVEGRLIKALESLQI-PSKILAAGRTDRGVHATHQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F+ W L K L L I+ +L V FH RF A RR Y Y + + Sbjct: 60 VIAFNTCDIWSSSKLLKHLAPKLGY--FIACKSLEEVPLSFHPRFEATRRRYRYFLSLAK 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P P D ++ A + G HDF F S IR+I + Sbjct: 118 -PSPFLSRFVGYHPCG-DMGILKQALELFKGEHDFKFFSKSGSDPKSTIRSIYKAFCYPY 175 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + A SFL +Q+R +G+ + + DL K + Q R ++P Sbjct: 176 MLYNLPCLVLVFEANSFLRSQVRLMLGAALACSLKQISLEDLYKQITLQRRFLMRAVSP- 234 Query: 237 EGLYFDSVEY 246 GLY SV Y Sbjct: 235 SGLYLSSVFY 244 >gi|115730971|ref|XP_781664.2| PREDICTED: similar to MGC80334 protein [Strongylocentrotus purpuratus] gi|115939533|ref|XP_001190679.1| PREDICTED: similar to MGC80334 protein [Strongylocentrotus purpuratus] Length = 306 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 126/283 (44%), Gaps = 38/283 (13%) Query: 1 MIRYCMIIEYNGSGYFG-------WQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTD 52 M R+ + +Y G+ Y G + +Q IE A+ + V +H + RTD Sbjct: 1 MGRFLIYFQYIGTRYRGVVRATSLSASGEKFVGVQDVIEGALDELKPVIPVKLHVSSRTD 60 Query: 53 SGVHALRQVAHFDL---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 +GVHAL AHFD+ R+ + + A+N L+ I I+ V FH+ Sbjct: 61 TGVHALCNTAHFDMIFKSKRTGEPRDILAESITAAVNKKLE-DHDIRIIKTLRVQDSFHS 119 Query: 104 RFSAIRRSYLYRIITRQAP---LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR- 159 + A+ R+YLYR+ EK R+W + LD +M+ A+ VG HDFT FR Sbjct: 120 QHLAMGRTYLYRLAMGCRQIELPVFEKNRSWAFDQRLDIPSMKEASGRFVGTHDFTAFRN 179 Query: 160 -SIHCQASSPIRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSL 205 S+ SPI+TID + +E+ +RSFL+ QIR G+L Sbjct: 180 SSMDDDKKSPIKTIDMIEFRRTRGFLYHHCNKMAQLEFLELTFHSRSFLYKQIRRMTGAL 239 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPL--APPEGLYFDSVEY 246 VG G+ + + L+++D AP GLY + Y Sbjct: 240 VAVGLGRIAPSHITTILESRDNSHMHRTTMAPAHGLYLKEISY 282 >gi|255994429|ref|ZP_05427564.1| tRNA pseudouridine synthase A [Eubacterium saphenum ATCC 49989] gi|255993142|gb|EEU03231.1| tRNA pseudouridine synthase A [Eubacterium saphenum ATCC 49989] Length = 304 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 112/289 (38%), Gaps = 48/289 (16%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M I Y+GS + G+Q+ +S+QG IE A+ + G V + RTD+GVHA Q Sbjct: 1 MKHIAFKISYDGSAFKGFQKNHGITSVQGEIENALKPIVG-DVEISAVSRTDAGVHAFSQ 59 Query: 61 VAHFDLVREWVPVILCKAL-NAYLKISDT------ISILNLSIVDKQFHARFSAIRRSYL 113 + F L + L NA+ I+I + + + + R+ + Y+ Sbjct: 60 IFSFSYDTNIPHGRLAEVLTNAFSTRKSDYRKQAAIAIEGWAELGRAMNPRYFVKGKRYI 119 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + L L+ M+ A+ VG HDF+ FR+ SPIR + Sbjct: 120 YVFKKNAGSDIFARNYMLLTNGDLNVGRMKEEAKAFVGEHDFSAFRTQ--DGRSPIRKVF 177 Query: 174 HFDVNSFGNL-------------------------------------IEIRVVARSFLHT 196 +V S L + V FL+ Sbjct: 178 SANVISCEELNDGFHEPLTDEYGRISDIIALKKRLLPRLNLSNLQGYVFFAVTGEGFLYN 237 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 +R G+L VG K+ + L++++R+ G APP+GLY D V Sbjct: 238 MVRIMAGTLLEVGKNKFDKP-VCDVLKSKNRQMAGITAPPQGLYLDEVF 285 >gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303] gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303] Length = 277 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 114/248 (45%), Gaps = 25/248 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 R + + Y G+ Y G Q Q +I+G + K++ + + +GRTD+GVH+L Sbjct: 4 RMALKLAYIGTEYHGSQVQPELPTIEGELFKSLKNLEIIDDPKSANFVSSGRTDTGVHSL 63 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV FD + + + +N+ L ++I ++V +F+ R A R YLY + Sbjct: 64 GQVVTFDTDNPR--LAVPRVINSQL--PESIWAWAYAVVPDEFNPRHGAFSRRYLYIMSG 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + D +R A+++L+G HDF F + + S +RT+ ++ Sbjct: 120 EEY----------------DISRIRTASKYLIGTHDFANFCTP-VKGKSTVRTVQRINIR 162 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L I + A SFL +R V +L +VG G + LE+ L + +E AP G Sbjct: 163 VKGTLTLIDIQADSFLWKMVRKIVTALMMVGYGTRDTEWLEQMLNPEYYEEGIEPAPSYG 222 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 223 LILKDVDY 230 >gi|332261432|ref|XP_003279774.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like 1-like [Nomascus leucogenys] Length = 287 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 115/245 (46%), Gaps = 26/245 (10%) Query: 27 IQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVR-----EWVPVILCKALN 80 +Q +E+A + E V + RTD+GVHAL AH D+ R + P +L +ALN Sbjct: 25 VQNYLEEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLTEALN 84 Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP----LALEKGRAWLIPKS 136 +L+ I +L V FHAR +A R+YLYR+ T E+ W +P Sbjct: 85 THLRHP-AIRVLRAFRVPNDFHARHAATSRTYLYRLATGCNRRDELPVFERNLCWALPAD 143 Query: 137 -LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG------------NL 183 LD M+ AAQHL+G HDF+ F+S SP+RT+ V+ Sbjct: 144 CLDVVAMQEAAQHLLGTHDFSAFQSTGSPVPSPVRTLRRVSVSPGQASPLVTQESRKLRF 203 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYF 241 + ++SFL+ Q+R L VG G ++ L++QD K +AP GL+ Sbjct: 204 WSLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFL 263 Query: 242 DSVEY 246 SV Y Sbjct: 264 KSVLY 268 >gi|326932368|ref|XP_003212291.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Meleagris gallopavo] Length = 292 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 137/277 (49%), Gaps = 33/277 (11%) Query: 2 IRYCMIIEYNGSGYFG----WQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVH 56 RY + +Y G+ Y G Q +G +Q +EKA + + H + RTDSGVH Sbjct: 6 TRYLVFFQYWGTKYSGVMHTSAEQ-SGVGVQNYLEKAAQNLKPVVPIKFHISSRTDSGVH 64 Query: 57 ALRQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 AL AH D+ R + +L LN +LK + I IL+ V FHARFSA+ R+ Sbjct: 65 ALCNSAHLDIQRAPGKPAFQEKMLIGCLNHHLK-PEPIRILSAYRVTNNFHARFSALSRT 123 Query: 112 YLYRIITRQAP----LALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQA- 165 Y+YR++ E+ W L+ M+ AAQ L+G HDF+TF S++ + Sbjct: 124 YIYRLLMGCTHHSEIPVFERDLCWAPTGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETP 183 Query: 166 -SSPIRTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 SP++TI D+ E++ +RSFL+ Q+R VG+L VG GK Sbjct: 184 FRSPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGK 243 Query: 213 WTSTDLEKALQAQDRKECGP--LAPPEGLYFDSVEYS 247 +++ L+ +D + P +AP GL+ SVEY+ Sbjct: 244 LAPYHIKELLEMKDARAFPPFAMAPSSGLFLKSVEYN 280 >gi|150390096|ref|YP_001320145.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149949958|gb|ABR48486.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 248 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 119/251 (47%), Gaps = 8/251 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y M+I Y+G Y G+ + K+ SIQG +E + + E V V A TD+GVH+ Sbjct: 1 MQNYKMMIAYDGRKYTGYNKSKDNLEKSIQGKLELILSKLYEEEVEVISAVSTDAGVHSK 60 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ +F + YL D I IL++ D++FH+R+ +Y YR+ Sbjct: 61 GQIVNFIAPNSRLDEKEIFDYFEKYLT--DDIIILSVETADERFHSRYLMKSATYEYRLW 118 Query: 118 --TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 E+ L+ +++D ++ A ++LVG HDF F + S I+T+ Sbjct: 119 KKDAPNRPLFERQYVNLMNQTVDVTKIKKAGKYLVGEHDFLAFTTNRKTTKS-IKTMVSL 177 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 DV N I I + A FL R VG+L +G G+ +EKA ++++ + G A Sbjct: 178 DVMETRNEIIITMTANGFLLNMERVIVGTLIQIGLGQLPMNTIEKAFESKNMNDVGHKAS 237 Query: 236 PEGLYFDSVEY 246 L SVEY Sbjct: 238 AGALCLLSVEY 248 >gi|26554422|ref|NP_758356.1| tRNA pseudouridine synthase A [Mycoplasma penetrans HF-2] gi|42559813|sp|Q8CXQ1|TRUA_MYCPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|26454432|dbj|BAC44760.1| tRNA pseudouridine synthase [Mycoplasma penetrans HF-2] Length = 241 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + Y + I Y+GS + G+ +QK N ++Q +EK + L + G+GRTD VHA+ Sbjct: 1 MTYKLKISYDGSFFRGYAKQKDENLITVQSELEKYLSLFFNTKISTFGSGRTDKYVHAID 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q F ++ P + LN+ L I + ++ V FHARFS ++Y+Y I T Sbjct: 61 QTVSFKCDSDYDPKSIQNFLNSKLT---NIYVNSIEKVPNSFHARFSIKSKTYMYVINTG 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + KS+D + +G DF +F + + ++ RTI + Sbjct: 118 EF-DVFKQRYEYQYNKSIDIKKCEDIINLFIGTKDFLSFSTSKLENTT--RTIRWIRIIK 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + FL +R VG + + K T ++ + + P GL Sbjct: 175 KNKKIYIFINGEGFLRNMVRMIVGIILTYCENKITYQEVLDLFKNPKKGSAVIKVPGCGL 234 Query: 240 YFDSVEY 246 Y Y Sbjct: 235 YLYRTIY 241 >gi|170780769|ref|YP_001709101.1| tRNA pseudouridine synthase A [Clavibacter michiganensis subsp. sepedonicus] gi|169155337|emb|CAQ00440.1| putative pseudouridylate synthase [Clavibacter michiganensis subsp. sepedonicus] Length = 323 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 123/279 (44%), Gaps = 34/279 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 +R + + Y+G+G+ GW +Q ++QGS+E A+ + + AGRTD+GVHA Sbjct: 1 MRLRLDVAYDGTGFAGWAKQPGLRTVQGSLEDALAQLLARTPPAPTLVVAGRTDAGVHAT 60 Query: 59 RQVAHFDLVR------EWVP----------------------VILCKALNAYLKISDTIS 90 QVAH DL + P L + LN L + Sbjct: 61 GQVAHLDLTEAQIASLDRPPRGRAAEATAGEGQHVPTAARAASALARRLNGVLGARSDVV 120 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHL 149 +L + F ARFSA R+Y YR+ P L++ R +P +LD ++ AA L Sbjct: 121 VLACAPAPDGFDARFSATWRAYRYRVADADGPRDPLQRHRTVEVPVALDAAVLQEAADAL 180 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLV 208 +G HDF + + +S IRT+ + +E V A +F H+ +R+ VG+ Sbjct: 181 LGLHDFAAYCKPR-EGASTIRTLQELTWIRAADGALEAVVRADAFCHSMVRALVGACVAA 239 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G+ L + L+ ++R + P GL + V Y Sbjct: 240 ASGRVPVARLRELLELRERTSEFTVMPARGLVLERVGYP 278 >gi|254819223|ref|ZP_05224224.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC 13950] Length = 251 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 108/232 (46%), Gaps = 14/232 (6%) Query: 29 GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---------- 78 G +++A+ + V + AGRTD+GVHA QVAH D+ +P +A Sbjct: 3 GVLDEALTTIFRTPVRLRAAGRTDAGVHATGQVAHVDVPAAALPNAYSRAPHVGEAEFLP 62 Query: 79 --LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPK 135 + + ++++ F ARFSA+RR Y+YR+ T + P+ Sbjct: 63 LLRRLGRFLPTDVRVVDIVRAPAGFDARFSALRRHYVYRLSTAPWGVDPQQVRYVTAWPR 122 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 LD E M A++ L+G HDF F H + ++ IR + + G+LI RV A +F Sbjct: 123 PLDVEAMATASRDLLGLHDFAAFCR-HRENATTIRDLQRLEWTREGDLITARVSADAFCW 181 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +RS VG+L VG+ + + + L A R AP GL V+Y Sbjct: 182 SMVRSLVGALLAVGEHRRPVSWCRELLSATARSSDYATAPAHGLTLVGVDYP 233 >gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis str. Marburg] gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis str. Marburg] Length = 273 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 106/250 (42%), Gaps = 29/250 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M + + + Y G+ Y G+QRQ + +++G + A+ + AGRTD GVH Sbjct: 1 MRKIALKVAYIGTNYHGFQRQPDVPTVEGKLLDALKEAGVIRSPGDSRFQIAGRTDRGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL F E + L I +L + V F R+ + R Y Y + Sbjct: 61 ALGNFVSFFTEEEIHVNQINDLL------PHDIKVLAWASVMYPFKVRY-PLERHYRYIL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + S+D + M AA+H G HDF+ F + +PIR I+ Sbjct: 114 HRGE---------------SMDIDAMAKAAEHFRGTHDFSNFSRRRDR--NPIRKINDVR 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ N I + V SFL +R V L LV +G+ + D+ + L +R P APP Sbjct: 157 VSEDDNSILVDVYGESFLWQMVRKMVRVLLLVSEGELSPDDVPRLLDTDERVFIDP-APP 215 Query: 237 EGLYFDSVEY 246 E L ++Y Sbjct: 216 ENLILMDLKY 225 >gi|330507400|ref|YP_004383828.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP-6] gi|328928208|gb|AEB68010.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP-6] Length = 271 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 22/246 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + + Y G Y+G+Q+Q + ++ + +A+ + AGRTD GV AL QV Sbjct: 1 MKVALKLAYLGDNYYGFQKQPDRVTVDSQVRRALAQIGVIHGDFCYAGRTDRGVSALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + + + + + +N L I SI F AR++A+ R Y Y + Sbjct: 61 IDFWIDEDKIDLTRPRCVNGRL--PRDIWTWAWSIAPVGFSARWNALWREYQYLLW---- 114 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 LD + M AA L+G HDF F S ++ ++ ++ Sbjct: 115 ------------HPGLDRDLMEEAADMLLGEHDFRNFSSAKVG---TVKRVEKLEIRERD 159 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L + A FL +R VG+ + VG G+ + L+ + P AP EGL Sbjct: 160 GLFIFDIRADGFLWNMVRKIVGATEKVGSGQKDMRWFKDLLR-PELNHGAPTAPAEGLIL 218 Query: 242 DSVEYS 247 V Y Sbjct: 219 MEVGYD 224 >gi|254282596|ref|ZP_04957564.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR51-B] gi|219678799|gb|EED35148.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR51-B] Length = 222 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 70/201 (34%), Positives = 100/201 (49%), Gaps = 2/201 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 AGRTD+GVH Q+ HFD N+ L T+ + V+ FHARFS Sbjct: 5 CAGRTDTGVHGFAQIVHFDDPVGRSEKAWVMGTNSAL--PSTVRVHWAHPVEDDFHARFS 62 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 A R+Y Y I + A G + ++LD + M AAQ LVG HDF+ FR+ C A+ Sbjct: 63 AELRTYRYVIANTRVHPAQLAGLVTWVRRALDADVMNKAAQALVGEHDFSAFRAASCGAN 122 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 +P+R ++ + G+L+ I + A +FLH +R+ GSL +VG G T+ + +D Sbjct: 123 TPMRRVEQISITRRGDLVVIEIAANAFLHHMVRNIAGSLIMVGSGLRTADWFRDIFRGRD 182 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R A GLY V Y Sbjct: 183 RTVAADTAAAAGLYLIHVSYP 203 >gi|303233145|ref|ZP_07319818.1| tRNA pseudouridine synthase A [Atopobium vaginae PB189-T1-4] gi|302480730|gb|EFL43817.1| tRNA pseudouridine synthase A [Atopobium vaginae PB189-T1-4] Length = 321 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 107/257 (41%), Gaps = 17/257 (6%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G + G+ Q+ +++G + + V V + AGRTD+GVHA Q F Sbjct: 58 LRLGYEGEQFAGYAFQEGQRTVEGCVRDVLQRVLRRDVTLTCAGRTDAGVHAHAQYVSFP 117 Query: 66 LVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + E L ++LN + I+I + F ARF A RSY YRI T Sbjct: 118 VTHEECACAKSSLLRSLN--MLCPADIAIRTIYQAAPDFSARFDARSRSYTYRIATAPLK 175 Query: 123 LALEKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSI------HCQASSPIRTIDH 174 L W + ++M AAQ L+G H+F +F Q S R I Sbjct: 176 PVLTAPFVWWNRHVHHVCMDDMNAAAQALIGEHNFESFCKATSADVLKSQGLSLQRCITS 235 Query: 175 FDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 +V+ LI I + +FLH +R GSL VG G + L L A+ R Sbjct: 236 INVHRDYVLGEQLICIDIEGNAFLHNMVRIIAGSLLEVGRGARSVAWLGDVLAARTRTAA 295 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GL + V Y Sbjct: 296 AQTAPACGLTLEHVAYP 312 >gi|237752928|ref|ZP_04583408.1| tRNA pseudouridine synthase A [Helicobacter winghamensis ATCC BAA-430] gi|229375195|gb|EEO25286.1| tRNA pseudouridine synthase A [Helicobacter winghamensis ATCC BAA-430] Length = 249 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 108/246 (43%), Gaps = 9/246 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + M I YNG +FG+Q Q N S+ +E F G + +GRTD GVH+ QV Sbjct: 11 KVAMRIAYNGGAFFGFQSQSNVQSVANVLEDV-FKSVGVFSKIAASGRTDKGVHSSAQVI 69 Query: 63 HFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++ W L LNA L + I ++ V FHARFSA RR Y Y + + Sbjct: 70 SLEIPYFWKNLENLKVCLNAKLAPNLFI--KHIWEVGDDFHARFSATRRGYCYVLS--KH 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++ A + LVG H+F F+ S +R+I D+ F Sbjct: 126 FSPFLTPFSLHYNLK-NPNLIKQALKLLVGTHNFGAFKKQGSGEKSSVRSIFRADLREFK 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + FL +Q+R VG L + G T LE L + R P+AP GLY Sbjct: 185 GFWILSFWGNGFLRSQVRLMVGFLLEIDKGNLTLEALEAQLNGEMRYRI-PIAP-NGLYL 242 Query: 242 DSVEYS 247 V+++ Sbjct: 243 SRVDFN 248 >gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091] gi|121725515|sp|Q2NHB4|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091] Length = 274 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 26/252 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----AGRTDSGVH 56 M R + I Y GS + G+QRQ N +++G + + AGRTD GVH Sbjct: 1 MRRVALKIAYIGSNFHGYQRQPNYRTVEGELLRVFKETNIIEDTWTAHYSVAGRTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 + V F + LN L D I I+ + V F RF + R+Y Y Sbjct: 61 STGNVISFITDEDIH----INQLNGLL--PDDIKIIGEARVPYGFKVRF-PLTRTYTYI- 112 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 Q EK K+LD M +A + +G+H+F F +P R I + Sbjct: 113 ---QPISPFEK-------KNLDITKMHVAMESFIGKHNFRNFSKR--NEKNPNRKIIDVN 160 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--LA 234 + +++ +V SFL +R V S+ VG GK D+ + L+ ++ ++ A Sbjct: 161 LEVDEDVLIFTIVGESFLWNMVRKMVTSIMEVGYGKLDINDINELLKPKELRQFIRLQPA 220 Query: 235 PPEGLYFDSVEY 246 P GL +EY Sbjct: 221 PANGLILSDMEY 232 >gi|298253049|ref|ZP_06976841.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 5-1] gi|297532444|gb|EFH71330.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 5-1] Length = 305 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 79/285 (27%), Positives = 124/285 (43%), Gaps = 40/285 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ +V E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPVLRTVQGDIEAALHMVLRVPKNDPTESLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLK--ISDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + + AL LK + IS+ +S+ F ARF Sbjct: 61 VHASHQVCHLDVCEETLLRCVGHTGLDGVCALEYRLKHVLPQDISLHKVSVAPIGFDARF 120 Query: 106 SAIRRSYLYRIITR---QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 SA+ R+Y+YRI +G + LD + M AA+ ++G HDF +F + Sbjct: 121 SALERTYVYRICDASDYCDYDPRMRGFVLKLDDVLDVDAMNQAARLMIGLHDFGSFARPN 180 Query: 163 CQASSPIRTIDHFDVNSFG--------------------NLIEIRVVARSFLHTQIRSFV 202 + IR + G L+E +VA +F H +RS V Sbjct: 181 P-GGTTIRDVKSVCWERVGTRANDVRVKLKTGCVPPVEQGLLEFTIVADAFAHNMVRSLV 239 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +G GK + E+ + R+ P GL + V Y Sbjct: 240 QACVQIGCGKRSFDWFEEKINVPLREGSTGPIDPHGLTLEYVAYP 284 >gi|298709054|emb|CBJ31003.1| conserved unknown protein [Ectocarpus siliculosus] Length = 412 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 31/275 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + Y+G+ Y G+Q Q +G ++QG +EKA+ V V AGRTD+GVH++ Q Sbjct: 137 TRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQ 196 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQ----------FHARFSAIR 109 HFDL L ++N + + + + N+S+ + + +A Sbjct: 197 AVHFDLPNANEDLSQLAYSMNQMM--PEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARG 254 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPK----SLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 + Y YR+ L++ + ++ + + LVG+HDF F + + Sbjct: 255 KRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKR 314 Query: 166 SS-----------PIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 ++ +RT+ ++ + G I + L+ +R+ VG+L V G+ Sbjct: 315 ATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRL 374 Query: 214 TSTDLEKALQAQDR-KECGPLAPPEGLYFDSVEYS 247 +++ + R AP GL D+V Y Sbjct: 375 EPEVIDEIFATRVRDSRLIYAAPAHGLTLDTVLYD 409 >gi|322374718|ref|ZP_08049232.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] gi|321280218|gb|EFX57257.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] Length = 191 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 4/190 (2%) Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 3 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 60 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 61 RPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLSV 120 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 121 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 180 Query: 238 GLYFDSVEYS 247 GLY + Y Sbjct: 181 GLYLKEIRYE 190 >gi|283954398|ref|ZP_06371918.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 414] gi|283794015|gb|EFC32764.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 414] Length = 240 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 102/246 (41%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + S+Q + +A+ + G + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSATQPHKKSVQDVLGEALSHL-GIFSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 ASVECGEYFTNLEYLKKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHA 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + PK D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPK-FDLDKANELLSFFVGKKDLKFFCKSGGDNKTTLREIFLARAYTY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + R A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY Sbjct: 176 KDFSIFRFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNRFLAPPNGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRIHY 240 >gi|288932131|ref|YP_003436191.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642] gi|288894379|gb|ADC65916.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642] Length = 256 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 105/242 (43%), Gaps = 29/242 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 I Y G+ + G Q Q +++G I KA E + AGRTD+GVHA+ V F Sbjct: 2 AFKIAYIGTNFHGSQYQPELRTVEGEIRKAFEKAGIEYGKIMFAGRTDAGVHAIGNV--F 59 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + K LN+ L + +S+ +VD+ F R A R Y Y I Sbjct: 60 ATDLEEFSKKVVKKLNSNL--PEDVSVWGYKVVDENFKPRK-AKWRKYCYVI-------- 108 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L++G + E M+ AA+H VG+HDF F + S +R + DV GNLI Sbjct: 109 LDEGY--------NLEEMKEAAKHFVGKHDFGIFVR---GSESCVREVYESDVEKRGNLI 157 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + A +F +R SL + GK + K L+ + APP GL V Sbjct: 158 YFSIKANAFAWNMVRRMASSLMIA--GKEGIEEFFKILKGE---RAVSAAPPNGLVLVDV 212 Query: 245 EY 246 Y Sbjct: 213 HY 214 >gi|153951132|ref|YP_001398256.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. doylei 269.97] gi|166228691|sp|A7H426|TRUA_CAMJD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|152938578|gb|ABS43319.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. doylei 269.97] Length = 241 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q + +A+ + G + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSATQPHKKGVQDVLSEALSHL-GIFSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 VASVECGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + PK D VG+ D F + +R I + Sbjct: 117 SSYSPFMASYVYFYPK-FDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYA 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GL Sbjct: 176 YKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKKQCN-HFLAPPNGL 234 Query: 240 YFDSVEY 246 Y + Y Sbjct: 235 YLSRICY 241 >gi|255022149|ref|ZP_05294152.1| tRNA pseudouridine synthase A [Acidithiobacillus caldus ATCC 51756] gi|254968413|gb|EET25972.1| tRNA pseudouridine synthase A [Acidithiobacillus caldus ATCC 51756] Length = 206 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 98/187 (52%), Gaps = 2/187 (1%) Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + + +N YL +IS+L V + FHARF+A+ R Y Y I+ R Sbjct: 1 MVHFDAPVTRPALAWTRGVNRYL--PSSISVLWARPVPRDFHARFAAVGRRYRYCILNRS 58 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL GRA +P+ L E M+ AA L+GRHDF+ FR+ CQA PIR + V+ Sbjct: 59 ERSALYAGRAAWVPRPLAVEPMQEAASLLLGRHDFSAFRAAACQAKHPIRELRQLRVSRQ 118 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + A +FLH +R+ VG L +G G + L ++ R G AP EGLY Sbjct: 119 GDWVFVDAEANAFLHHMVRNLVGVLLGIGWGDRPPHWAAEVLASRKRALAGVTAPAEGLY 178 Query: 241 FDSVEYS 247 F + Y Sbjct: 179 FVAALYP 185 >gi|73956519|ref|XP_546716.2| PREDICTED: similar to pseudouridylate synthase-like 1 [Canis familiaris] Length = 294 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 120/258 (46%), Gaps = 31/258 (12%) Query: 16 FGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVAHFDLVR-----E 69 G QR + +E+A + V + RTD+GVHAL AH D+ R Sbjct: 30 RGSQR---AVGVLNYLEEAAKRLNSVVPVRFTISSRTDAGVHALSNAAHLDVQRRSGQPP 86 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL----AL 125 + P +L +ALNA+++ I +L V FHAR +A R+YLYR++T Sbjct: 87 FSPEVLAEALNAHVRHP-AIRVLQAFRVPSDFHARHAATSRTYLYRLVTGCHRPDQLSVF 145 Query: 126 EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--- 181 E+ R W + LD + M+ AAQHL+G HDF F+S +S +RT+ V+ Sbjct: 146 ERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSVRTLRRASVSPDPGSP 205 Query: 182 ---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD---RKE 229 + + +RSFL+ Q+R L VG G ++ L+++D R + Sbjct: 206 FVLAQEKRLHFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRDPLGRHQ 265 Query: 230 CGPLAPPEGLYFDSVEYS 247 +AP GL+ SV Y Sbjct: 266 AR-VAPAHGLFLKSVLYE 282 >gi|301094360|ref|XP_002896286.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] gi|262109681|gb|EEY67733.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] Length = 300 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 115/273 (42%), Gaps = 29/273 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVH 56 +R ++EY+G+ +FG Q Q ++Q IE A+F TGE + A RTD+GVH Sbjct: 30 VRRRCVVEYDGAAFFGSQAQDQPGALRTVQEVIEDALFRTTGEKGLPRLRFASRTDTGVH 89 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLS---IVDKQFHARFSAIRRSYL 113 AL QV F + ALN L D + +++ + F R R+ Y Sbjct: 90 ALGQVMVFVSQCIESDRVFRDALNTRL--PDDVLCHSMTTMTEAEADFDPRSDTKRKRYE 147 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG---RHDFTTFR--SIHCQASSP 168 Y +I + W + K LD M+ A HL+ DF+ F + Sbjct: 148 YELIVGGLRPVAHRRNVWYVHKPLDVAKMQEAIDHLMTPPTTKDFSAFTPQKAVDRERGN 207 Query: 169 IRTIDHFDVNS-----FGN---------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 I TI +++S G+ I + F + +R VG+L +G G+ Sbjct: 208 ICTISTIELHSTMMDDRGDAQYREDVATRIRLVFEGNRFRYKMVRILVGTLVDIGLGRLK 267 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 D+ L +Q+R + G AP +GL V+Y Sbjct: 268 PDDIPVILASQNRGKAGQGAPSQGLTLIWVKYD 300 >gi|260188510|ref|ZP_05765984.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CPHL_A] gi|289449159|ref|ZP_06438903.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CPHL_A] gi|289422117|gb|EFD19318.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CPHL_A] Length = 256 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 14/238 (5%) Query: 23 NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---- 78 ++ G ++ A+ + V + AGRTD+GVHA QVAH D+ + +P +A Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 79 --------LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGR 129 + + IL+++ F ARFSA+RR Y+YR+ T + + Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 P+ LD + M A++ L+G HDF F H + ++ IR + D + G+L+ V Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCR-HREGATTIRDLQRLDWSRAGSLVTAHVT 180 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 A +F + +RS VG+L VG+ + +T + L A R +AP GL V+Y Sbjct: 181 ADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYP 238 >gi|219853269|ref|YP_002467701.1| tRNA pseudouridine synthase ACD [Methanosphaerula palustris E1-9c] gi|254789642|sp|B8GFU5|TRUA_METPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219547528|gb|ACL17978.1| tRNA pseudouridine synthase A [Methanosphaerula palustris E1-9c] Length = 280 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 100/248 (40%), Gaps = 28/248 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + Y+G+ + G Q Q +++G + A V AGRTD GVHA Sbjct: 1 MRLAFQLSYDGNQFRGSQLQPAYRTVEGELITACQRVQLFDDPCKAGFALAGRTDRGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F P +ALN L S + + V FH RF AI R+Y Y Sbjct: 61 RGQVGAFSTP---FPERAVEALNGQL--SPDLWCNGFAEVPPSFHPRFDAISRTYRYFFA 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 LD M AA L+G HDF+ R + SPIRT+ V Sbjct: 116 ----------------DWPLDIRAMDQAAAALIGTHDFS--RLARVREKSPIRTVKSARV 157 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + V A ++L +R +L L+G + +E+ L + R+ P AP + Sbjct: 158 FQDRGIPVFEVTAHTYLWHMVRCMAAALLLIGTHEREPELMERLLSGKCRRN-PPAAPAD 216 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 217 GLVLWDVD 224 >gi|326671566|ref|XP_683563.5| PREDICTED: tRNA pseudouridine synthase-like 1-like [Danio rerio] Length = 291 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 84/274 (30%), Positives = 129/274 (47%), Gaps = 32/274 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGS---IEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y GS Y G + ++QG +E A+ + V V + RTD+GVHAL Sbjct: 7 RYLIFFQYTGSKYSGVMKAPAHQAVQGVGNHLENAVRKLKPVNEVCVSISSRTDTGVHAL 66 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R L +ALN LK + I I V FHAR+ A R+Y+ Sbjct: 67 CNSAHVDIQRRADKPPLSEQSLLEALNFQLKE-EPIRITRAYRVHSDFHARYQAQSRTYV 125 Query: 114 YRIITRQAPLAL----EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQA--S 166 YR+ L EK W + + L+ + MR A+ L+G HDF+TFR++ A Sbjct: 126 YRLALGCQHHTLMPLTEKDLCWALRDTRLNIDAMREASALLLGTHDFSTFRALSSDAPFK 185 Query: 167 SPIRTIDHFDVNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 P++T+D + E+ +RSFL+ Q+R G L +G G+ + Sbjct: 186 CPVKTLDLAQLEPGESFSQRHFQRDIQFWELTFKSRSFLYRQVRRMTGVLVAIGQGRLSV 245 Query: 216 TDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 + ++ L+A+D P AP GL+ +V+Y Sbjct: 246 SKIQDLLEARD-SLAFPNNLTAPAHGLFLTNVQY 278 >gi|302869940|ref|YP_003838577.1| tRNA-pseudouridine synthase I [Micromonospora aurantiaca ATCC 27029] gi|315501401|ref|YP_004080288.1| tRNA-pseudouridine synthase i [Micromonospora sp. L5] gi|302572799|gb|ADL49001.1| tRNA-pseudouridine synthase I [Micromonospora aurantiaca ATCC 27029] gi|315408020|gb|ADU06137.1| tRNA-pseudouridine synthase I [Micromonospora sp. L5] Length = 277 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW Q ++ G + + + LV G + AGRTD+GVHA Sbjct: 5 TRLRLDVSYDGTDFSGWAPQPARRTVAGVLMQTLDLVLGAGTATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPTPVWREHEGRLLRRLARLLPPDVRVRAMTEVPADFDARFSATFRRYEYRVTD 124 Query: 119 RQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G PK LD + AA LVG HDF + + ++ +R + D Sbjct: 125 APWGAEPLRRGDTLAWPKPLDLAALNAAAAGLVGEHDFAAYCRRK-ENATTLREVTRLDW 183 Query: 178 NSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I V A +F +RS VG++ + GDG+ L ++R +AP Sbjct: 184 RRDPDGILVATVQADAFCQNMVRSLVGAMLVAGDGRRPVQWPAGLLTRRERSSEVTVAPA 243 Query: 237 EGLYFDSVEYS 247 GL +V Y Sbjct: 244 HGLALVAVGYP 254 >gi|294464718|gb|ADE77866.1| unknown [Picea sitchensis] Length = 382 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 13/193 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + ++Y G+ + G Q+Q N ++QG +E A G+ V + RTD+GVHAL V Sbjct: 29 QRYLVAVDYIGTNFAGMQKQPNFRTVQGVLEDAFNKFIGQPVSSASSSRTDAGVHALTNV 88 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ ISI+++ V FHAR+ A Sbjct: 89 CHVDVERISKRKPGEVLPPHEPEVVKRAVNHFLQKDAGDISIIDVRFVPMTFHARYRAQE 148 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YRI++ + P EK RAW +P+ L M+ A + LVG HDF++FR+ CQA SP Sbjct: 149 RTYYYRILSGKEPLSIFEKDRAWHVPEDLGLSCMQEACKVLVGHHDFSSFRASGCQAKSP 208 Query: 169 IRTIDHFDVNSFG 181 I+ +D V Sbjct: 209 IKILDELRVCEMP 221 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 40/77 (51%) Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + F + A+SFL+ Q+R VG+LK VG GK + D+E L+A+ Sbjct: 292 EVLEFGHRRGHRGYVVVARAQSFLYHQVRLLVGTLKCVGTGKLSVDDVESILKARTITVA 351 Query: 231 GPLAPPEGLYFDSVEYS 247 P+AP GLY +V+Y Sbjct: 352 PPMAPACGLYLAAVKYD 368 >gi|121639375|ref|YP_979599.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663320|ref|YP_001284843.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] gi|215405494|ref|ZP_03417675.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 02_1987] gi|215413368|ref|ZP_03422053.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|215428962|ref|ZP_03426881.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T92] gi|215432426|ref|ZP_03430345.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis EAS054] gi|215447792|ref|ZP_03434544.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T85] gi|218755231|ref|ZP_03534027.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis GM 1503] gi|219559524|ref|ZP_03538600.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T17] gi|224991871|ref|YP_002646560.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo 172] gi|254552559|ref|ZP_05143006.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260202637|ref|ZP_05770128.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|260206826|ref|ZP_05774317.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis K85] gi|289445055|ref|ZP_06434799.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|289571689|ref|ZP_06451916.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17] gi|289576191|ref|ZP_06456418.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85] gi|289752179|ref|ZP_06511557.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92] gi|289755588|ref|ZP_06514966.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis EAS054] gi|289759618|ref|ZP_06518996.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85] gi|289763637|ref|ZP_06523015.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM 1503] gi|297636114|ref|ZP_06953894.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 4207] gi|297733114|ref|ZP_06962232.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN R506] gi|306777802|ref|ZP_07416139.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu001] gi|306782521|ref|ZP_07420858.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu002] gi|306809459|ref|ZP_07446127.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu007] gi|313660445|ref|ZP_07817325.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN V2475] gi|2104378|emb|CAB08721.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE) [Mycobacterium tuberculosis H37Rv] gi|31620228|emb|CAD95671.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE) [Mycobacterium bovis AF2122/97] gi|121495023|emb|CAL73509.1| Probable tRNA pseudouridine synthase A truA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148507472|gb|ABQ75281.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] gi|224774986|dbj|BAH27792.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo 172] gi|289417974|gb|EFD15214.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|289540622|gb|EFD45200.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85] gi|289545443|gb|EFD49091.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17] gi|289692766|gb|EFD60195.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92] gi|289696175|gb|EFD63604.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis EAS054] gi|289711143|gb|EFD75159.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM 1503] gi|289715182|gb|EFD79194.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85] gi|308213887|gb|EFO73286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu001] gi|308324838|gb|EFP13689.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu002] gi|308344299|gb|EFP33150.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu007] gi|326905301|gb|EGE52234.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis W-148] Length = 256 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 14/238 (5%) Query: 23 NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---- 78 ++ G ++ A+ + V + AGRTD+GVHA QVAH D+ + +P +A Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 79 --------LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGR 129 + + IL+++ F ARFSA+RR Y+YR+ T + + Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARY 121 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 P+ LD + M A++ L+G HDF F H + ++ IR + D + G L+ V Sbjct: 122 ITAWPRELDLDAMTAASRDLMGLHDFAAFCR-HREGATTIRDLQRLDWSRAGTLVTAHVT 180 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 A +F + +RS VG+L VG+ + +T + L A R +AP GL V+Y Sbjct: 181 ADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYP 238 >gi|86153529|ref|ZP_01071733.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843255|gb|EAQ60466.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni HB93-13] Length = 241 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 VASVECGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + PK D + VG+ D F + +R I + Sbjct: 117 SSYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYA 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GL Sbjct: 176 YKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGL 234 Query: 240 YFDSVEY 246 Y + Y Sbjct: 235 YLSRICY 241 >gi|121613330|ref|YP_001000512.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] gi|166228692|sp|A1VZH1|TRUA_CAMJJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121504241|gb|EAQ72335.2| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] Length = 241 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA + L K LN + I I + V F RF R Y Y I + Sbjct: 60 VASVGCGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + PK D + VG+ D F + +R I + Sbjct: 117 SSYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYA 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GL Sbjct: 176 YKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGL 234 Query: 240 YFDSVEY 246 Y + Y Sbjct: 235 YLSRICY 241 >gi|78777192|ref|YP_393507.1| pseudouridylate synthase [Sulfurimonas denitrificans DSM 1251] gi|78497732|gb|ABB44272.1| Pseudouridylate synthase [Sulfurimonas denitrificans DSM 1251] Length = 236 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 109/247 (44%), Gaps = 13/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R +II YNG+ + G Q QK ++I G++E A+ + E + +GRTD GVHA Q Sbjct: 1 MRCALIIAYNGTNFLGSQTQKESKNTILGTLEIALKKINIET-KIVASGRTDRGVHASGQ 59 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL W + L +L L +I I + IVD FHAR+SA RR Y Y I Sbjct: 60 VCHIDLPPYWSDITKLQDSLGRVL--PPSILIKKIKIVDDTFHARYSAKRRVYRYIIKKA 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ E+ I + D ++ + G DF F S R I Sbjct: 118 KS-NPFEENFVTFIDDT-DFFEIQKNIKLFCGAFDFKFFMKSGGDIKSTTRVIYRAFAYE 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I + A FL +QIR VG+L ++ L+ + + P A GL Sbjct: 176 HKGFIVLNFEANGFLRSQIRLMVGALLS-----LNEDEILDKLECRVNHKIKP-AKSNGL 229 Query: 240 YFDSVEY 246 Y ++Y Sbjct: 230 YLSKIKY 236 >gi|294621109|ref|ZP_06700300.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291599345|gb|EFF30371.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] Length = 165 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 92/161 (57%), Gaps = 3/161 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 + + A P LD E ++ A L+G HDFT+F + Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCA 159 >gi|154503357|ref|ZP_02040417.1| hypothetical protein RUMGNA_01181 [Ruminococcus gnavus ATCC 29149] gi|153796024|gb|EDN78444.1| hypothetical protein RUMGNA_01181 [Ruminococcus gnavus ATCC 29149] Length = 252 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 8/249 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQ---RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+G+ Y GW+ +++N ++ G I A+ + E + + A +TD GVHA Sbjct: 1 MQTLMLTVEYDGTRYAGWKAAPKKENLDTVLGRIHTALARLLKEDIQLFCAAKTDPGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ F +P L +LN L I++L+ V ++FHA + I Sbjct: 61 RGQILSFQTTSSLLPSALKSSLNQVL--PQDIAVLDARQVSERFHAELLPKHCIWELCIK 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T P + +P D M+ A L GRHD F + + + +R + + Sbjct: 119 TGPTPDVFRQKYTLFLPDLPDPLRMQEAFSFLKGRHDVRCFSPVK-KKKAIMRELYSLRI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + +++ + FL + + L +G G + + A + G AP Sbjct: 178 EHSDDEMQLFLEGSDFLPFMPATLMQLLLDIGTGTLDACCIPSIF-AGEHSYSGH-APAH 235 Query: 238 GLYFDSVEY 246 LY + Y Sbjct: 236 ALYLHDIVY 244 >gi|57167827|ref|ZP_00366967.1| tRNA pseudouridine synthase A [Campylobacter coli RM2228] gi|57020949|gb|EAL57613.1| tRNA pseudouridine synthase A [Campylobacter coli RM2228] Length = 240 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 102/246 (41%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + S+Q +++ A+ + G V A RTD GVHA V Sbjct: 1 MKLKIIFSYDGSKFLGSATQPHKKSVQDALQDALSHL-GIFSSVLMASRTDKGVHASYAV 59 Query: 62 AHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + L K +N + I + NL I+ F R+ R Y Y Sbjct: 60 ACVECGEHFRDLNYLKKQINKF--SHPFIHVKNLKIMPSNFEVRYDVKSREYRYIFYHG- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +D + Q+ VG DF F + IR I S+ Sbjct: 117 VYNPFLASYVHFYPF-IDVLKADLVLQNFVGIKDFKFFCKSGGDNKTTIREIFLAKAYSY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + R A FL QIR V S+ V + K + +L++ ++A+ ++ LAPP GLY Sbjct: 176 KDFTIFRFKANGFLRAQIRLMVASVLKVLENKMSIEELKEQIEAK-KQYNHFLAPPCGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRISY 240 >gi|290999771|ref|XP_002682453.1| predicted protein [Naegleria gruberi] gi|284096080|gb|EFC49709.1| predicted protein [Naegleria gruberi] Length = 377 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 87/304 (28%), Positives = 127/304 (41%), Gaps = 61/304 (20%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVH 56 RY +I +Y G+ Y G+Q+Q N G++IQ IE ++ + + + G+ RTDSGVH Sbjct: 58 RYKLIFQYRGNNYDGYQKQNNKGEPRGNTIQKHIEGSLHKLFNTNDIYIVGSSRTDSGVH 117 Query: 57 ALRQVAHFDLVREWVPVI-------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AL HFD+ E + + LN YLK + I I + D FHAR Sbjct: 118 ALHNTCHFDVASEIIEKRENYTAKNVIFGLNFYLK-DEDIVICSCEKKDMNFHARHRVKE 176 Query: 110 RSYLYR-IITRQAPL-----ALEKGRAWLIPK-------------SLD---------CEN 141 R Y YR ++T P + + W++ SLD ++ Sbjct: 177 REYQYRVLLTGPKPDLAYKVPFIQDQYWIVNGAKYEQGGPTKQEISLDFRSLETYFRIDD 236 Query: 142 MRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNSFG-----------------NL 183 +R A Q+ +G H+F F + S I+TI+ V Sbjct: 237 VREACQYFIGTHNFNNFCKSDLPERVSRIKTINSVTVEEIDLQQDQTISPLFFSTSKCKE 296 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFD 242 I + SFLH Q+R V +L VG GK T L +Q + R APP GL+ Sbjct: 297 IRFTIRGNSFLHNQVRIMVDALVKVGIGKMNPTYLRALVQNPNMRYPEKGSAPPHGLFLT 356 Query: 243 SVEY 246 +V Y Sbjct: 357 NVVY 360 >gi|152993424|ref|YP_001359145.1| tRNA pseudouridine synthase A [Sulfurovum sp. NBC37-1] gi|151425285|dbj|BAF72788.1| tRNA pseudouridine synthase A [Sulfurovum sp. NBC37-1] Length = 240 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 113/247 (45%), Gaps = 9/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGS-IEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R +I Y+GS + G+Q+Q + + IE A+ + I + G+GRTD+GVHA Q Sbjct: 1 MRVKAVIAYDGSAFQGFQKQTRTNRTVTTTIENALADLQI-ISPLTGSGRTDAGVHASGQ 59 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFDL W L +LN L TI ++S FHARFSA +R Y Y Sbjct: 60 VIHFDLPEFWSDLNRLKNSLNKKLS---TIRFKHISAAPDDFHARFSAKKRIYRYIFKEN 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + E+ S D + ++ A VG HDF F + +R I + Sbjct: 117 EL-SVFERKYVAHYS-SFDPDILKRALLMFVGEHDFIYFHKTGSDIHTTVRKIYDANYRQ 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + A FL +Q+R V S L + T L+K + A+ R L+PPEGL Sbjct: 175 EGKYHFLYFTANGFLRSQVRMMVESAMLCAQNELTLEQLQKQINAEKRYHSR-LSPPEGL 233 Query: 240 YFDSVEY 246 Y + Y Sbjct: 234 YLARILY 240 >gi|86150269|ref|ZP_01068496.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597547|ref|ZP_01100781.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 84-25] gi|148926529|ref|ZP_01810211.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni CG8486] gi|218562455|ref|YP_002344234.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|24212598|sp|Q9PP96|TRUA_CAMJE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|85839385|gb|EAQ56647.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190139|gb|EAQ94114.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 84-25] gi|112360161|emb|CAL34955.1| tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845223|gb|EDK22317.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni CG8486] Length = 241 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 VASVECGDYFTNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSH 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + PK D VG+ D F + +R I + Sbjct: 117 ASYSPFMASYVHFYPK-FDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYA 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GL Sbjct: 176 YKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGL 234 Query: 240 YFDSVEY 246 Y + Y Sbjct: 235 YLSRICY 241 >gi|301629805|ref|XP_002944022.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana) tropicalis] Length = 207 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P + N +L I++ V FHAR A R Y Y ++ Sbjct: 2 QVVHFDTPLRRTPFAWVRGSNTFL--PPDIAVQWAQAVPASFHARACATARRYAYVLLQS 59 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++E R + + LD MR AAQHL+G HDFT+FR+ CQA +P++T+ + Sbjct: 60 PVRPSVESARVGWVFQPLDGAAMRAAAQHLLGEHDFTSFRASACQAKTPVKTLHRIGITR 119 Query: 180 FG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G +FLH +R+ +G L VG G+ + + + L A+ R P Sbjct: 120 RGAGPHGYWRFEFEGNAFLHHMVRNIMGCLIAVGQGRKPADWMAEVLAARSRDAAAPTFA 179 Query: 236 PEGLYFDSVEYS 247 P+GLYF Y Sbjct: 180 PDGLYFLGPVYD 191 >gi|254756839|ref|ZP_05208867.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] Length = 185 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 87/182 (47%), Gaps = 3/182 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FG 181 Sbjct: 184 QD 185 >gi|52548278|gb|AAU82127.1| pseudouridylate synthase [uncultured archaeon GZfos10C7] Length = 284 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 107/255 (41%), Gaps = 29/255 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVH 56 R + I Y G+ Y G+Q Q +I+G + KA+ + AGRTD+GVH Sbjct: 9 RIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGIIEDRKTANYSAAGRTDTGVH 68 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV F + + +N+ L +I + ++ F+AR AI R Y Y + Sbjct: 69 ALAQVVSFVTSNQNTT---PRMINSVL-PDGSIWVSAIAKPYSGFNARRDAISREYRYYL 124 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-----ASSPIRT 171 + LD MR A++ VG HDF+ F + S IR Sbjct: 125 FLQTELD-------------LDITRMREASELFVGTHDFSNFSLLQGNEYEVAGYSTIRD 171 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I +V + + I + A FL +R V +L++VG G +E L + KE Sbjct: 172 IKRIEVKTKKPFVIIDIEASGFLRKMVRKIVSALRMVGSGMKDKRWIEDLLDLRI-KEGI 230 Query: 232 PLAPPEGLYFDSVEY 246 AP GL +V Y Sbjct: 231 EPAPAFGLVLKNVSY 245 >gi|157164133|ref|YP_001466582.1| tRNA pseudouridine synthase A [Campylobacter concisus 13826] gi|112800733|gb|EAT98077.1| tRNA pseudouridine synthase A [Campylobacter concisus 13826] Length = 243 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q Q + + ++ +E+A+ V G V + RTD VHA Q Sbjct: 1 MKIQLIYSYDGSKFQGSQTQPHENGVEDELERALAHV-GIFERVVSSSRTDKSVHANNQS 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + + + L + +I I +++VD+ F ARF A+ RSY Y I + Sbjct: 60 SSVICGDHFTNLERLRDLINHHAHP-SIHIKRINLVDESFQARFDAVARSYRYVIDHGKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +PK D E ++ +G HDF+ + SP+R I ++ Sbjct: 119 -DVFSSNYKVFLPK-FDIEKANEILRNFIGEHDFSAYMKTGSDTKSPVREIYKAFCYTYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I A FL Q+R V +L K ++ +L AP EGLY Sbjct: 177 EQTIIVFKANGFLRGQVRLMVANLLKALKQKDGGKLIKASLNGHP-ALTRIPAPAEGLYL 235 Query: 242 DSVEY 246 + V Y Sbjct: 236 NRVFY 240 >gi|224079884|ref|XP_002194368.1| PREDICTED: similar to MGC80334 protein [Taeniopygia guttata] Length = 427 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 125/248 (50%), Gaps = 28/248 (11%) Query: 27 IQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVAHFDLVRE-----WVPVILCKALN 80 +Q +EKA + + H + RTD+GVHAL AH D+ R + L + LN Sbjct: 153 VQNYLEKAAERLKPSAPIKFHISSRTDAGVHALANAAHLDIQRPPGKAPFSGQQLVQGLN 212 Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP----LALEKGRAWLIPK- 135 +L+ + I IL+ V FHARF A+ R+Y+YR++ A E+ W Sbjct: 213 HHLR-PEPIRILSAQRVSSTFHARFCALSRTYIYRLLLGCAHHSQIPVFEQDLCWAPAGG 271 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDVNSFG------------ 181 LD MR AAQ L+G HDF++FRS+H +A+ SP+RT+ + Sbjct: 272 PLDVAAMREAAQFLLGTHDFSSFRSLHAEAAAQSPVRTLQQLQLQPAPGFLQQHYLHSGL 331 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--LAPPEGL 239 E++V +RSFL+ Q+R VG+L VG G+ L + L+ +D P +AP GL Sbjct: 332 EFWEVKVKSRSFLYRQVRRMVGALVAVGQGRLAPVQLRELLELRDPHAFPPHAMAPAAGL 391 Query: 240 YFDSVEYS 247 + VEYS Sbjct: 392 FLQRVEYS 399 Score = 89.1 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 21/139 (15%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQV 61 RY + +Y G+ Y I + +A + + H + RTD+GVHAL Sbjct: 7 RYLVFFQYLGTRYR----------IIAELTRAAERLKPSAPIKFHISSRTDAGVHALANA 56 Query: 62 AHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AH D+ R + L + LN +L+ + I IL+ V FHARF A+ R+Y+YR+ Sbjct: 57 AHLDIQRPPGKAPFSSQQLVQGLNHHLR-PEPIRILSAQRVSSTFHARFCALSRTYIYRL 115 Query: 117 ITRQAP----LALEKGRAW 131 + A E+ W Sbjct: 116 LLGCAHHSQIPVFEQDLCW 134 >gi|305432148|ref|ZP_07401314.1| tRNA pseudouridine synthase A [Campylobacter coli JV20] gi|304444813|gb|EFM37460.1| tRNA pseudouridine synthase A [Campylobacter coli JV20] Length = 240 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + S+Q +++ A+ + G V A RTD GVHA V Sbjct: 1 MKLKIIFSYDGSKFLGSATQPHKKSVQDALQDALSHL-GIFSSVLMASRTDKGVHASYAV 59 Query: 62 AHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + L K +N + I + NL I+ F R+ R Y Y Sbjct: 60 ACVECGEHFRDLNYLKKQINKF--SHPFIHVKNLKIMPSNFEVRYDVKSREYRYIFYHG- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +D + Q+ VG DF F + IR I S+ Sbjct: 117 VYNPFLASYVHFYPF-IDVLKADLVLQNFVGIKDFKFFCKSGGDNKTTIREIFLAKAYSY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + R A FL QIR V S+ V + K + +L++ ++ + ++ LAPP GLY Sbjct: 176 KDFTIFRFKANGFLRAQIRLMVASVLKVLENKMSIEELKEQIEVK-KQYNHFLAPPCGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRISY 240 >gi|325959678|ref|YP_004291144.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21] gi|325331110|gb|ADZ10172.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21] Length = 271 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 26/251 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVH 56 M++ + Y G+ Y G+QRQ N +I+G + +A + E AGRTD GV Sbjct: 1 MLKIAFKVAYIGTDYHGFQRQPNLPTIEGELLRAFKKSGISDSPEKSDYSIAGRTDRGVS 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V + + +N YL I I+ ++V F R+ A R Y Y + Sbjct: 61 ALGNVVCLKTDK----DVTINRINYYL--PSNIRIIGSTMVSNGFKPRY-AKLRHYRYIL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L P +L+ + M+ AA+ + G+H++ F +A P R + D Sbjct: 114 DKS------------LCPNTLNLKLMKQAAKQMEGKHNYINFSKRSERA--PERMVYSVD 159 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I VV SFL +R V L + G + T +LE P+A Sbjct: 160 LVETPDNIVFDVVGESFLWNMVRKMVKVLVMFGREELTLENLETLFNPDVPAAIKPVA-S 218 Query: 237 EGLYFDSVEYS 247 +GL V Y Sbjct: 219 DGLILMDVVYD 229 >gi|313682232|ref|YP_004059970.1| tRNA pseudouridine synthase a [Sulfuricurvum kujiense DSM 16994] gi|313155092|gb|ADR33770.1| tRNA pseudouridine synthase A [Sulfuricurvum kujiense DSM 16994] Length = 242 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 107/248 (43%), Gaps = 8/248 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + + YNGS + G Q+Q N +++ G + + + +GRTD GVHA Sbjct: 1 MSRVKITLSYNGSAFMGSQQQPNTDNTVMGHLITVLHRLKITATP-KASGRTDRGVHATH 59 Query: 60 QVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W L + LN L ++ I + V+ FHAR+SA RR Y Y I Sbjct: 60 QVIHVDLPDFWTDLHRLREMLNVQL--PPSMRIQRIEFVEDDFHARYSAKRRVYRYVIKE 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + E +P SL+ E + A VG HDF F+ R I Sbjct: 118 GLS-NPFEDNFITFVP-SLNREAICDAIGCFVGTHDFEFFKKSGNDLEHHTRIIYRAYAY 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 S+ I FL +QIR VG L + GK T L + + R +AP G Sbjct: 176 SYKGHFIIVFEGNGFLRSQIRLMVGFLLRISAGKATKEQLIEQINCVKRHTTD-IAPHNG 234 Query: 239 LYFDSVEY 246 LY ++Y Sbjct: 235 LYLTHIKY 242 >gi|57237668|ref|YP_178916.1| tRNA pseudouridine synthase A [Campylobacter jejuni RM1221] gi|62901173|sp|Q5HUW9|TRUA_CAMJR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57166472|gb|AAW35251.1| tRNA pseudouridine synthase A [Campylobacter jejuni RM1221] gi|315058277|gb|ADT72606.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni S3] Length = 240 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+G+ + G Q + +Q ++ A+ + G + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGTAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 ASVECGDYFTNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHS 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + PK D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY Sbjct: 176 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRICY 240 >gi|313674169|ref|YP_004052165.1| tRNA pseudouridine synthase a [Marivirga tractuosa DSM 4126] gi|312940867|gb|ADR20057.1| tRNA pseudouridine synthase A [Marivirga tractuosa DSM 4126] Length = 261 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 102/253 (40%), Gaps = 12/253 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ Q ++QG +EK + FL GE + GAGRTD+ V A Sbjct: 9 YLVEIQYLGFRYHGWQFQHGLKTLQGMLEKTLNFLFQGEKFKILGAGRTDAMVSAESAYF 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + LN L I++LN+ IVD +F+ ++Y Y + Sbjct: 69 ELFTNQALDLESFARELNENL--PADINVLNVEIVDSKFNIIQDVRLKTYQYYFASVNKK 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-- 180 I SLD M+ AA+ G +DF F + S +R I + Sbjct: 127 YPFAAPLMNCIHHSLDISKMKEAARLFEGENDFRHFMVGDAENKSIVREIKESRIEENTA 186 Query: 181 -------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V + F+ Q+R +G+L +G + + DLE ALQ Sbjct: 187 LRASFFPEKSYVFIVKGKGFMRYQVRMMMGALIRIGRNEISLQDLEHALQGNPPNFTKLN 246 Query: 234 APPEGLYFDSVEY 246 A GL VE+ Sbjct: 247 AAASGLMVKEVEF 259 >gi|225011098|ref|ZP_03701561.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] gi|225004732|gb|EEG42691.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] Length = 268 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 12/256 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALRQV 61 Y + + Y G Y GWQ+Q +I+ + K I V GE + GAGRTD+ V ++ Sbjct: 8 YLVRVSYLGFRYSGWQKQPGVKTIESMLTKTISFVLGETRSFKILGAGRTDAKVSSIHGA 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + E + + L + I + +++ V+++F+ SA ++Y Y Sbjct: 68 FELFIEHEPLKNLDALMDLFNLNLPADIRVESITAVEEKFNIIHSAKEKTYCYLFSFGSK 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-PIRTIDHFDVNSF 180 P+ L+ M+ AA+ G HDF F + + +S IRTI ++ Sbjct: 128 AHPFCAPIMANYPEDLNITLMQEAAKLFEGTHDFKNFTARKDKKNSQTIRTIASCELKKN 187 Query: 181 ---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + V + FL QIR +G+L +G + +++ L + Sbjct: 188 KAISASFFPEDSYVLEVRGKGFLRYQIRLMMGALICLGRNEIDLEGIKRLLNSDLDDFIP 247 Query: 232 PLAPPEGLYFDSVEYS 247 +A GL+ + + Sbjct: 248 YVAAGSGLHLKELLFD 263 >gi|224010986|ref|XP_002294450.1| hypothetical protein THAPSDRAFT_264420 [Thalassiosira pseudonana CCMP1335] gi|220969945|gb|EED88284.1| hypothetical protein THAPSDRAFT_264420 [Thalassiosira pseudonana CCMP1335] Length = 264 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 113/266 (42%), Gaps = 30/266 (11%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ + GWQ Q S++QG IE+ + + V GAGRTD+GVHA Q HFDL Sbjct: 2 VAYHGTPFNGWQLQPGRSTVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDLF 61 Query: 68 R-------EWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLYRIITR 119 P IL ++N + I + +L + +HA A + Y YR+ Sbjct: 62 HDEIPFKPPTPPEILQHSMNRMM--PLDIRMFHLQLAPYTPWHAIQRAQSKWYSYRLTLG 119 Query: 120 QA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---------RSIHCQASSPI 169 +E+ LD E + Q VG HDF F + + + + Sbjct: 120 PTLWNPMERFTRTHFVH-LDMERLESILQLYVGTHDFGAFGGQLEQNAKKRNDGKRINTV 178 Query: 170 RTIDHFDVNSFGNL--------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 RT+ ++ L I + + L+ +R+ VG+ V G+ L + Sbjct: 179 RTVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAEL 238 Query: 222 LQAQDRKECG-PLAPPEGLYFDSVEY 246 L+ DRK+ APPEGL + V Y Sbjct: 239 LKIPDRKDNPSKPAPPEGLTLECVYY 264 >gi|307352726|ref|YP_003893777.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM 11571] gi|307155959|gb|ADN35339.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM 11571] Length = 261 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 28/246 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA---IFLVTG-EIVVVHGAGRTDSGVHA 57 +R ++ Y G+ ++G Q+Q +++G A + L + +GRTD+GVHA Sbjct: 1 MRIAFLVSYIGTDFYGSQQQPGIRTVEGEFIGACIDLGLFSDWRDARFQFSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ FD P A+N L I + V + F+ RF R Y Y Sbjct: 61 RSQICAFDTDY---PERAVSAINRKL--PGDIRCRGWAGVPEGFNPRFEVSERIYRYFFP 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +LD M +AA++L G HDF+ F + + +P R I ++ Sbjct: 116 DG----------------NLDWGKMSLAAEYLPGVHDFSRFARV--EGKNPERKIFLAEI 157 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I + SFL +R +L LVG G + + AL D P APPE Sbjct: 158 IPDKEGIIFEIRGESFLWNMVRCISHALWLVGSGSESPEVISAALSNTD-GPRFPAAPPE 216 Query: 238 GLYFDS 243 GL Sbjct: 217 GLVLWD 222 >gi|86152100|ref|ZP_01070312.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 260.94] gi|85840885|gb|EAQ58135.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 260.94] Length = 240 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 ASVECGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHS 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + PK D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY Sbjct: 176 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRICY 240 >gi|167005448|ref|ZP_02271206.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] Length = 240 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 100/246 (40%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + L K LN + I I + V F RF R Y Y I + Sbjct: 60 ASVGCGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHS 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + PK D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY Sbjct: 176 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRICY 240 >gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter thermautotrophicus str. Delta H] gi|3915162|sp|O26928|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus str. Delta H] Length = 275 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 105/250 (42%), Gaps = 29/250 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF----LVTGEIVVVHGAGRTDSGVH 56 M + + + Y G+ Y G+QRQ + +++G + +A+ + + AGRTD GVH Sbjct: 1 MRKIALKVAYIGTNYHGFQRQPDVPTVEGKLLEALEGAGIIEDPKRARFQIAGRTDRGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL F + + L I +L + V F R+ + R Y Y + Sbjct: 61 ALGNFVSFFTEEDIHVNQINDLL------PRDIRVLAWASVMYPFKVRY-PLERHYRYIL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +S+D +M AA H G HDF+ F + P+R I+ Sbjct: 114 ---------------HREESMDTYSMAEAAAHFRGTHDFSNFSRRSDR--DPVRRINDVR 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ G+ I I V SFL +R V +L +V +G+ D+ L DR+ PP Sbjct: 157 ISEVGDSIIIDVYGESFLWQMVRKMVRALLMVSEGELAPDDMAGLLDT-DRRVFLEPMPP 215 Query: 237 EGLYFDSVEY 246 E L ++Y Sbjct: 216 ENLILMDLKY 225 >gi|149193965|ref|ZP_01871063.1| Pseudouridylate synthase [Caminibacter mediatlanticus TB-2] gi|149135918|gb|EDM24396.1| Pseudouridylate synthase [Caminibacter mediatlanticus TB-2] Length = 223 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 6/229 (2%) Query: 18 WQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK 77 Q+Q N +IQG IE A+ + + V AGRTD GVHAL QV F + W L Sbjct: 1 MQKQPNKKTIQGEIELALNKLNINSI-VQHAGRTDKGVHALNQVISFTIPNFWDLNKLQT 59 Query: 78 ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL 137 +LN + I + + F+ RF+A +RSY Y I + K + Sbjct: 60 SLNKIIHPYIH--IKKIKFIKNDFNPRFNAKKRSYRYIIS--PIFSPHKADYETYYDKKI 115 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 + E ++ A + G +DF F + ++ IRTI D+ + N + ++++ FL Q Sbjct: 116 NIELLKKAIKKFEGTYDFEYFAKTGSEVNNYIRTIYKTDIIEYKNKVILKIIGNGFLRGQ 175 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 IR L ++ + K T DL+K L +D+ LAPP GLY + + Y Sbjct: 176 IRIITNFLLMINENKLTIDDLQKQLN-KDQLFTKHLAPPNGLYLERIWY 223 >gi|222823975|ref|YP_002575549.1| tRNA pseudouridine synthase A [Campylobacter lari RM2100] gi|222539197|gb|ACM64298.1| tRNA pseudouridine synthase A [Campylobacter lari RM2100] Length = 244 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 7/244 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + Y+GS + G Q + S+Q ++E+A+ + + A RTD GVHA VA Sbjct: 3 LKLTFSYDGSKFQGSATQPHKLSVQDALEQALSHLGIYNKTLF-ASRTDKGVHANNGVAC 61 Query: 64 FDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + + L +N + I I ++ V + F RF +R+Y Y I + Sbjct: 62 VKVGEHFKDLLYLKNKINHF--AHPFIHIKHIQKVHENFQVRFDVKKRAYRYIISHERY- 118 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 PK ++ + + A G HDF F+ + R I V ++ N Sbjct: 119 NPFLASYVHFYPK-INIQLAKKIASLFEGEHDFKLFQKEGSDNKTTTRIIYKSKVYTYKN 177 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 A FL +QIR + S+ V + K + +L++ + A+ + LAP GLY Sbjct: 178 CTIFYFEANGFLRSQIRMMIASILKVLEKKISQENLKEQIDAK-KAHIRLLAPASGLYLS 236 Query: 243 SVEY 246 + Y Sbjct: 237 KISY 240 >gi|226325156|ref|ZP_03800674.1| hypothetical protein COPCOM_02948 [Coprococcus comes ATCC 27758] gi|225206504|gb|EEG88858.1| hypothetical protein COPCOM_02948 [Coprococcus comes ATCC 27758] Length = 255 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 114/247 (46%), Gaps = 9/247 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+GS Y G+ +K +SI+ + AI VTG+ + A +T+ GVHA Q Sbjct: 12 MTTIKLTIEYDGSRYPGFSTKKKSTSIESKLTLAIRDVTGQSTQLFAAVKTEPGVHAAHQ 71 Query: 61 VAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + F L +E +L LNA L I++ +L I D++F A + +Y RI Sbjct: 72 IVSFQLEKESFSDNTELLKMKLNAAL--PADIAVTSLEIADERFVASLAVKSCTYTCRIA 129 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T A + ++ +SLD E+M+ AAQ L G HDF F + S +RT++ + Sbjct: 130 TDPAAALFSRPYTCVVTESLDLESMQQAAQLLTGTHDFAAFSN-GRTRKSTVRTVETIKI 188 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N LI+I++ A SFL + G++ G K T L + P P Sbjct: 189 NREDQLIQIQLTANSFLRHMPQLLAGTILTAGKEKKTDG---TTLTLAGVESVAPACPSH 245 Query: 238 GLYFDSV 244 V Sbjct: 246 AFTLTDV 252 >gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon] Length = 275 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 112/251 (44%), Gaps = 28/251 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R + I Y G+ Y G+Q Q +++G + KA+ + + AGRTD GVH Sbjct: 7 RVALKIGYLGTNYHGFQIQPQAELQTVEGELFKALKRLGILEDRKTANYSYAGRTDKGVH 66 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV FD + + + + +N L + I L ++ F+AR AIRR Y Y + Sbjct: 67 ALAQVVSFDTLNQNMT---PRMINTML--PNDIWALAIAKPHAGFNARKEAIRREYRYFL 121 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHF 175 + LD MR A++ L+G HDF+ F + S I+ I Sbjct: 122 ---------------FLQTELDISRMRDASELLIGAHDFSNFSQRDGLEGKSLIKEIKQV 166 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ I I + A FL +R V +L +VG GK + ++ L + +++ P AP Sbjct: 167 NIVKSDLFIIIDIAASGFLRKMVREIVSALSMVGSGKRAKSWIQDLLDLKIKEQIEP-AP 225 Query: 236 PEGLYFDSVEY 246 GL V Y Sbjct: 226 AFGLVLKDVSY 236 >gi|260062928|ref|YP_003196008.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] gi|88784496|gb|EAR15666.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] Length = 274 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 97/263 (36%), Gaps = 22/263 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + I + G + GWQ Q ++ G I K F++ V + GAGRTD+ V A Sbjct: 9 FLIRIAFLGFRFHGWQEQPGQRTVAGMIRKTFRFVLPDTPVKILGAGRTDARVSARDFAV 68 Query: 63 HFDLVREWVPV--ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +P +L ALN L I + ++ V F+ ++Y Y T Sbjct: 69 QVIARAPELPPFGVLADALNENL--PPDIRVNSIRPVPPGFNPIRDCASKTYRYYFQTGN 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--- 177 P A +P S D MR AA G H+F F + + +R + + Sbjct: 127 HPDAYWTPFVGFLPGSPDITRMREAAPLFEGMHNFRCFTASPSEDKKYVRRVTRCRLGVG 186 Query: 178 ----------NSFGNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + G+ + V A F Q+R + +L VG + L K L Sbjct: 187 SPMDGVVAGKDPEGDTGFTAHMLEVRAPGFGRNQVRLMMAALAAVGRQELQPETLVKVLD 246 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 + P GL+ VE+ Sbjct: 247 EGQGWMSDSIVPASGLHLMHVEF 269 >gi|34557089|ref|NP_906904.1| tRNA pseudouridine synthase A [Wolinella succinogenes DSM 1740] gi|34482804|emb|CAE09804.1| TRNA PSEUDOURIDINE SYNTHASE [Wolinella succinogenes] Length = 267 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 109/248 (43%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +EY+GS +FG Q QK S+ ++++ + + G V +GRTD GVHA RQ Sbjct: 15 MPTLLAFLEYDGSAFFGSQIQKEEPSVALALQRGLKSM-GIASKVRFSGRTDRGVHATRQ 73 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 F++ + + LN L + + L + + RF A R+Y Y + Sbjct: 74 AVSFEVPYKKSDWGYFKEELNKKLF--PYLRVRRLYPIREGLDPRFEAKSRAYRYLLSEE 131 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A D ++ A + LVG HDF F+ Q S +R + + Sbjct: 132 PL-SAFASRYVTHAHLG-DERKIQEAMKLLVGWHDFALFKKSGSQEKSTLREMRRCWLYR 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR VG+L VG G+ + + ++ L+A+ R C APP GL Sbjct: 190 YRSYWVFYFEANGFLRLQIRLLVGALLKVGRGEMSLEEFKEQLEAKRRFFC-EGAPPYGL 248 Query: 240 YFDSVEYS 247 Y V + Sbjct: 249 YLCKVSFE 256 >gi|291550669|emb|CBL26931.1| Pseudouridylate synthase [Ruminococcus torques L2-14] Length = 260 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 103/265 (38%), Gaps = 24/265 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + ++Y+G+ Y GW+R + N ++ IE + VTG V + RT+ GVHA Sbjct: 1 MQNIKLTLQYDGTRYLGWKRPEKDHNDRTVSYKIENVLEKVTGTPVTLFSGVRTEPGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 +F + P LN YL I++L+ ++F A +A +Y Y + Sbjct: 61 RNLTVNFLTESQLTPAEFKTVLNQYL--PQDIAVLDAVSTPERFRADLNAREITYEYAMD 118 Query: 118 TRQAPLALEKGRAWLIPKSL----------------DCENMRIAAQHLVGRHDFTTFRSI 161 K + L + M AA L+G HDF F SI Sbjct: 119 LSPIYDLFHKNYRGRLTDLLSDSLFDLPPEQTAELPNILLMETAAHSLLGTHDFKHFSSI 178 Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + + I + + + IR+ A FL+ +G+L +G GK + Sbjct: 179 R-KKKGTEKEIKTITFVTEESTLYIRMTANDFLYQMAPFILGTLLDIGIGKRPVECINAI 237 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 L+ +++ +GL + Y Sbjct: 238 LEGKEKPSA--SCDTKGLILYDIVY 260 >gi|153005130|ref|YP_001379455.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5] gi|152028703|gb|ABS26471.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5] Length = 265 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 115/260 (44%), Gaps = 20/260 (7%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R Y + + Y G + G+QRQ ++Q ++E A+ L G + A RTD+GVHAL Sbjct: 1 MERRFYALRVAYEGGRFRGFQRQPGLPTVQDALEGAL-LAAGVRATLAVAARTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F P L ALNA L + +++L + V FHAR +A R Y+Y + Sbjct: 60 DQVVSFSARAALDPAALRGALNAAL--PEGVAVLEVLRVAPSFHARNTARARRYVYLV-- 115 Query: 119 RQAPLALEKGRAWLIPKS---------LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 P AW +P LD M A H VG HDFT F Q + Sbjct: 116 GAPPPESLAAYAWTLPDPRAFPDGEARLDVAAMSAALAHAVGTHDFTAFARPGEQRG-TV 174 Query: 170 RTIDHFDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 RT+ +V S + L + FL IR+ G+ VG G+ + + L A+ R Sbjct: 175 RTVTRAEVVSATWAPLHALVFEGHGFLRAMIRNLAGTAVTVGVGRAAPEIVRELLLARGR 234 Query: 228 KECGPLAPPEGLYFDSVEYS 247 G AP GL SV Y Sbjct: 235 YR-GVRAPGWGLTLASVVYP 253 >gi|119477629|ref|ZP_01617779.1| hypothetical protein GP2143_09210 [marine gamma proteobacterium HTCC2143] gi|119449132|gb|EAW30372.1| hypothetical protein GP2143_09210 [marine gamma proteobacterium HTCC2143] Length = 261 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 69/261 (26%), Positives = 111/261 (42%), Gaps = 19/261 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDS 53 M + + I Y G+ YFGWQ Q + +I+G+I KA+ ++ + + A RTD Sbjct: 1 MHYFRVTIAYKGTHYFGWQAQSKDTLKEEYPTIEGTILKALKKMSNYQHCTISAASRTDG 60 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA Q+A L + L LN+ L I IL + K F S++ + Y Sbjct: 61 GVHAQGQLAKISLSIDISADHLLLGLNSAL--PLDIRILECASSTKNFQPNVSSVSKEYH 118 Query: 114 YRIITRQAPLA----LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y + + + +D +R A Q VGRHDF F +S + Sbjct: 119 YYFTASKTDNVAISEISLRLSTHDDGPIDMALLRTACQLFVGRHDFYNFSVRDLNNASSV 178 Query: 170 RTIDHFDVNS------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 R I + D+ + ++++ FL IR +G+L +G G+ T D+ LQ Sbjct: 179 RQISYCDILQANFSPLVDEVYYLKIIGDGFLKYMIRYVMGALIELGKGRITLEDIAFYLQ 238 Query: 224 AQDRKECGPLAPPEGLYFDSV 244 Q + A +GL+ + Sbjct: 239 HQQDDKLSAKAKAKGLHLIKI 259 >gi|195490008|ref|XP_002092963.1| GE26463, isoform B [Drosophila yakuba] gi|194179064|gb|EDW92675.1| GE26463, isoform B [Drosophila yakuba] Length = 306 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 125/301 (41%), Gaps = 55/301 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVFHPINEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL DL R + L LN L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQGLPIRVLSSKLVSNSFHCRYH 120 Query: 107 AIRRSYLYRIITRQAP----------------LALEKGRAWLIPKS-LDCENMRIAAQHL 149 AI R+YLYR + P E R + + S D ++ AA+ Sbjct: 121 AIGRTYLYRFAVAKDPSLEDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVQAAARMF 180 Query: 150 VGRHDFTTFRSIHCQASS------PIRTIDHFDVNSFG---------------NLIEIRV 188 +G HDF TF S+ Q S +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVE 245 A+SFL+ Q+R VG+L +G+G+ L + L + P LAP GLY V Sbjct: 241 KAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDPRILLAPACGLYLCKVH 300 Query: 246 Y 246 Y Sbjct: 301 Y 301 >gi|295133853|ref|YP_003584529.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] gi|294981868|gb|ADF52333.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] Length = 262 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 100/262 (38%), Gaps = 15/262 (5%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGV 55 M R Y + ++Y G GWQ+Q N +++G I K + V E V G RTD+ V Sbjct: 1 MQRVRYYYLIKVQYLGYRLHGWQKQPNFKTVEGLITKTLRYVMPETRYKVLGCSRTDAMV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 + + + + + L + I + ++ V F+ + + Y Y Sbjct: 61 SSNGSAFELFVDEQPLENLEDFLALFNLNLPQDIRVTDIEEVGANFNIIQHSKIKEYAYL 120 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 LD + M+ AQ G H+F + + S+ R I Sbjct: 121 FSFGSKNHPFCAPFMANFQFDLDIDKMKKGAQLFNGTHNFRNYCVRVSEKSTFEREILKA 180 Query: 176 DVNSF---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 ++ V + FL Q+R +G++ +G G+++ D+E++L+ + Sbjct: 181 EIVENKLYTANFFPKKSYIFHVHGKGFLRHQVRLMMGAMIQLGRGEFSLGDIEQSLKEGN 240 Query: 227 RK-ECGPLAPPEGLYFDSVEYS 247 + AP GL + + + Sbjct: 241 EHLQMDYSAPASGLILNDIHFD 262 >gi|283957185|ref|ZP_06374649.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 1336] gi|283791361|gb|EFC30166.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 1336] Length = 240 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 100/246 (40%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 ASVECGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHS 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + PK D VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPK-FDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY Sbjct: 176 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRICY 240 >gi|157415094|ref|YP_001482350.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81116] gi|172047118|sp|A8FLN6|TRUA_CAMJ8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157386058|gb|ABV52373.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 81116] gi|284926072|gb|ADC28424.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni IA3902] gi|307747736|gb|ADN91006.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni M1] gi|315927713|gb|EFV07042.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315931164|gb|EFV10137.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 327] Length = 240 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 99/246 (40%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 ASVECGDYFTNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHA 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + PK D VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPK-FDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY Sbjct: 176 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRICY 240 >gi|312136442|ref|YP_004003779.1| tRNA pseudouridine synthase a [Methanothermus fervidus DSM 2088] gi|311224161|gb|ADP77017.1| tRNA pseudouridine synthase A [Methanothermus fervidus DSM 2088] Length = 277 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 29/250 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGE--IVVVHGAGRTDSGVH 56 M + + + Y G+ +FG+QRQ + +++G + KA+ + E + AGRTD GVH Sbjct: 1 MKKIALKVAYIGTHFFGFQRQPDLRTVEGELIKALVETGILDESGVARFRSAGRTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V F ++ +N+ L D + IL + V F R++ R + Sbjct: 61 ALGNVVTFFTDE----DVIINQINSCL--PDDVYILGKASVPYGFKTRYAYRRHYRY-VL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L+ E M+ A++ GRHDFT F S + +PIR I+ D Sbjct: 114 PND----------------GLNIELMKEASKKFEGRHDFTNF-SRRVEERNPIRYIEKVD 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G I + V+ SFL +R V L +G ++ +++ L +++ P+ PP Sbjct: 157 VVDKGEYIWVDVIGESFLWQMVRKMVKVLFDIGKEEYEPEKIDEFLDTEEKVYIEPM-PP 215 Query: 237 EGLYFDSVEY 246 E L V Y Sbjct: 216 ENLILMKVMY 225 >gi|65317910|ref|ZP_00390869.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012] Length = 175 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 + + + + K L+ ++M+ AA+HLVG HDFT F Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFS 158 >gi|42559739|sp|Q7M9U3|TRUA_WOLSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 253 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 109/248 (43%), Gaps = 7/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +EY+GS +FG Q QK S+ ++++ + + G V +GRTD GVHA RQ Sbjct: 1 MPTLLAFLEYDGSAFFGSQIQKEEPSVALALQRGLKSM-GIASKVRFSGRTDRGVHATRQ 59 Query: 61 VAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 F++ + + LN L + + L + + RF A R+Y Y + Sbjct: 60 AVSFEVPYKKSDWGYFKEELNKKLF--PYLRVRRLYPIREGLDPRFEAKSRAYRYLLSEE 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A D ++ A + LVG HDF F+ Q S +R + + Sbjct: 118 PL-SAFASRYVTHAHLG-DERKIQEAMKLLVGWHDFALFKKSGSQEKSTLREMRRCWLYR 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR VG+L VG G+ + + ++ L+A+ R C APP GL Sbjct: 176 YRSYWVFYFEANGFLRLQIRLLVGALLKVGRGEMSLEEFKEQLEAKRRFFC-EGAPPYGL 234 Query: 240 YFDSVEYS 247 Y V + Sbjct: 235 YLCKVSFE 242 >gi|194208171|ref|XP_001496445.2| PREDICTED: similar to LOC617640 protein [Equus caballus] Length = 389 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 26/240 (10%) Query: 32 EKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR-----EWVPVILCKALNAYLKIS 86 E A L + V + + RTD+GVHAL AH D+ R + P +L KALN +L+ Sbjct: 131 EAAERLNSVVPVKLTISSRTDAGVHALSNAAHLDVQRRSGQPPFSPEVLAKALNTHLRHP 190 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITR-QAPL---ALEKGRAWLIP-KSLDCEN 141 I +L V FHAR+SA R+YLYR+ T P E+ R W + SLD Sbjct: 191 -AIRVLQAFRVPSDFHARYSATSRTYLYRLATGCPQPDQLSVFEQNRCWALRADSLDVAA 249 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-------------NSFGNLIEIRV 188 M AAQHL+G HDF+ F+S +S +RT+ V + + Sbjct: 250 MEEAAQHLLGTHDFSAFQSAGSPTTSSVRTLRRASVSPDLPSPFVLPQESRRLRFWSLEF 309 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++SFL+ Q+R L VG G T ++ L+++D + +AP GL+ SV Y Sbjct: 310 ESQSFLYRQVRRMTAVLVAVGLGALTPAQVKMILESRDPLGRHQTRVAPAHGLFLKSVLY 369 >gi|126640496|ref|YP_001083480.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 17978] Length = 205 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 2/188 (1%) Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 1 MVAHFDTNAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 58 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 59 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 118 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 119 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAPPDGL 178 Query: 240 YFDSVEYS 247 YF Y Sbjct: 179 YFIQCYYP 186 >gi|307110841|gb|EFN59076.1| hypothetical protein CHLNCDRAFT_19189 [Chlorella variabilis] Length = 300 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 25/265 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKN------GSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSG 54 Y +++Y+G+ Y+G+Q Q ++Q +E+A+ TG+ + V AGRTD+G Sbjct: 4 YAAVLQYDGTAYWGFQLQPAPQGRRAKPTVQLRVEQALCRATGQGRQALRVQAAGRTDAG 63 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV F R L +ALNA + I + + V ++ R+ A R++Y Y Sbjct: 64 VHARGQVVQFCCARRQGAAPLLRALNALM--PPDIRAVAVQEVPLDWNVRY-ASRKTYAY 120 Query: 115 RIITRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSPIR 170 + + L + M AA VG HDF+ F ++ A SP++ Sbjct: 121 DLHLDPVADPFLHRWRCHPRRPERLRLDAMADAAALFVGTHDFSRFANLGPDATRKSPVK 180 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T+ + + + V FL+ Q+R G+L VG G + D+ AL +R Sbjct: 181 TVLSYRLLPLEGGARLEVTGTGFLYKQVRHMTGALLAVGGGSLGADDIAAALAGGERARS 240 Query: 231 GP---------LAPPEGLYFDSVEY 246 +A GL V Y Sbjct: 241 AAQRNAFRGWQVAEARGLCLQQVVY 265 >gi|88807910|ref|ZP_01123421.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7805] gi|88787949|gb|EAR19105.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7805] Length = 251 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 98/222 (44%), Gaps = 4/222 (1%) Query: 28 QGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 QG +E+AI + V AGRTD+GVHA QV HFD ALN L Sbjct: 2 QGVLEQAIADLDPHRPVHAVAAGRTDAGVHAAGQVVHFDSSGPIPANRWAPALNGRL--P 59 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIA 145 +I + +HA +SA R Y Y + + P +W + LD M A Sbjct: 60 ASIRVREAVERPLSWHACYSATYRRYRYTLYNGRRPNLFLAPWSWHRYQARLDEHAMADA 119 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 ++G HDF F+ + + TI V G+LI++ + A FL+ +R +G L Sbjct: 120 LGGMLGSHDFAAFQRAGSRRAHSRTTIQDVSVQRRGDLIDLEIQATGFLYGMVRLLMGQL 179 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VG+ + T E+ + + R+E APP+GL Y Sbjct: 180 VAVGEHRLTPEQFERRWRERRREEVKDGAPPQGLCLLRAGYE 221 >gi|332293112|ref|YP_004431721.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171198|gb|AEE20453.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 259 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 98/252 (38%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ+Q + +++ +E+ V + +GRTD+ V A Sbjct: 8 YLLKIQYLGFRYHGWQKQPDVLTVERMMERTFSYVLDRKNFKLLASGRTDAKVSANVAYV 67 Query: 63 HFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L K LN L I L ++ VDK+F+ + I + Y+Y + Sbjct: 68 ELFLNDSPLPEEGFLKLLNNNL--PQDIRCLEITQVDKKFNVMDAPIAKEYVYLFSYGEK 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 I SLD E M+ AA+ G HDF ++ + I I + Sbjct: 126 NHPFAAPYMINIAGSLDIELMKEAARLFEGEHDFRSYAYKPNPETKTIGNISSSLIEPNE 185 Query: 182 ---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 RV + F QIR +G L +G+GK +K L A + + Sbjct: 186 LYTANFFPKESFAFRVSGKGFKRHQIRLMMGMLFDIGEGKVDLDFFKKTLDASNDIKLSR 245 Query: 233 LAPPEGLYFDSV 244 +A GL +V Sbjct: 246 IAQASGLLLQNV 257 >gi|195436014|ref|XP_002065973.1| GK25867, isoform B [Drosophila willistoni] gi|194162058|gb|EDW76959.1| GK25867, isoform B [Drosophila willistoni] Length = 313 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 93/303 (30%), Positives = 130/303 (42%), Gaps = 58/303 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQR------QK--NGSSIQGSIEKAI--FLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ Q + +S+QG +E A+ F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLDQPRLDTNSVQGCLELALRVFRPTNEIQTVL-SSR 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTIHVDLERYDGQPYALTTLTGVLNRTLGKQRLPIRVLSTELVPDTFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALE-----KGRAWLIP------------KSLDCENMRIAAQH 148 AI R+YLYR + + +G IP S D E +R AA+ Sbjct: 120 HAIGRTYLYRFAVARNSPVDDGKLKNRGYEAFIPVEELDRCYFLQAASFDIERVRSAARL 179 Query: 149 LVGRHDFTTFRSIHCQASS-------PIRTIDHFDV---------------NSFGNLIEI 186 +G HDF TF S+ Q +R ID ++ N + EI Sbjct: 180 FLGIHDFRTFMSVSRQKGPSRDHPMFTVRKIDEINIRPGHSLALNAHAKLANETYDHWEI 239 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDS 243 + A+SFL+ Q+R VG+L +G GK + + L + P LAP GLY Sbjct: 240 EIKAKSFLYKQVRRIVGTLLALGTGKIDEKCIYQMLTIPSKNSWEPRILLAPACGLYLCQ 299 Query: 244 VEY 246 V Y Sbjct: 300 VHY 302 >gi|58699741|ref|ZP_00374392.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58533741|gb|EAL58089.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 156 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 92/155 (59%) Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 LN +VD FHARFSA +R Y YRI+ R AP ALE G W + LD MR AA+HL+G Sbjct: 2 LNAEVVDDAFHARFSAKKRYYEYRIVNRYAPAALETGYVWQVFSPLDVNIMREAAKHLLG 61 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 +HD ++FRS C A++PIRTID D+ GN I I++ A SFLH Q+R G+L G Sbjct: 62 KHDLSSFRSKDCHAANPIRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGKN 121 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + ++ L R G APP GLY ++Y Sbjct: 122 RTNPQEMLHILSQCKRSAAGVTAPPFGLYLVKIDY 156 >gi|156538761|ref|XP_001607889.1| PREDICTED: similar to CG34140-PA [Nasonia vitripennis] Length = 298 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 86/285 (30%), Positives = 125/285 (43%), Gaps = 40/285 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGV 55 RY + + Y G+ Y G Q+ N +IQG+IE ++ + AGRTD+GV Sbjct: 6 RRYLLKLSYIGTSYRGSQKHVNNAVVDIDTIQGAIEYSMRRFNFSNIPTISLAGRTDAGV 65 Query: 56 HALRQVAHFDLVR--EWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSY 112 HAL AH DL L + +N L + I I++ V K FHAR+SA R+Y Sbjct: 66 HALCTSAHVDLEHSGTLDTEYLVRMMNRNLINANHEIRIMSAHEVSKDFHARYSAKSRTY 125 Query: 113 LYRIITRQAP-----LALEKGRAWL---IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 LYR+I + P E R+ P++ D E +R + G DF TF + Sbjct: 126 LYRLIIPKDPLDHRFPIAEANRSLFLNMYPQNFDIERLRSGIKLFCGTKDFMTFSARKRD 185 Query: 165 A-------SSPIRTIDHFDVNSFG------------NLIEIRVVARSFLHTQIRSFVGSL 205 + +RT+ H + G + + +RSFL+ QIR VGSL Sbjct: 186 RNPEFEMRRNFVRTL-HVTMKEAGPLMSFDPLSKNLDYWHLEFTSRSFLYNQIRRIVGSL 244 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEYS 247 +G K + D++ +Q P A P GLY +VEY Sbjct: 245 IALGSHKVSEEDIQTMIQVPSHHNWNPHVTPAAPRGLYLKNVEYD 289 >gi|116072175|ref|ZP_01469443.1| tRNA pseudouridine synthase [Synechococcus sp. BL107] gi|116065798|gb|EAU71556.1| tRNA pseudouridine synthase [Synechococcus sp. BL107] Length = 253 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 28 QGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 Q +E AI + + AGRTD+GVHA QV HFD ALN L Sbjct: 2 QAVLETAIAQLDPLRPIQSFAAGRTDAGVHAAAQVVHFDCSGPIPAAKWAPALNGRL--P 59 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL-IPKSLDCENMRIA 145 +I + + +HA +SA+ R Y Y I + P W L+ ENMR+A Sbjct: 60 ASIRVRESVERPQDWHACYSAVYRRYRYIIHNGRRPNLFLTPWTWHRYHHRLNEENMRVA 119 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 + ++G HDF F + TI V G+LI + + A FL+ +R + L Sbjct: 120 LEGMIGLHDFAAFMRAGSRRLHSRTTIQDVLVEREGDLIRVEIQASGFLYGMVRLLMAQL 179 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+ + + E+ + + R + AP GL Y Sbjct: 180 VAVGEHRLSVEAFEQRWRDRRRDQVKEAAPARGLCLLRAGY 220 >gi|148683104|gb|EDL15051.1| mCG23338, isoform CRA_b [Mus musculus] Length = 284 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 115/252 (45%), Gaps = 29/252 (11%) Query: 21 QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR-----EWVPVIL 75 Q Q E A L + + V + RTD+GVHAL AH D+ R + P ++ Sbjct: 3 QPPVRFPQ---EAAKRLNSVDPVRFTISSRTDAGVHALSNAAHLDIQRRPGQSPFSPEVV 59 Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL----ALEKGRAW 131 KALN +LK I +L V FHAR +A R+Y YR+ T + E+ W Sbjct: 60 AKALNTHLKHP-AIRVLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQNVCW 118 Query: 132 LIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--------- 181 + + LD M+ AAQHL+G HDF+ F+S ++ +RT+ V+ Sbjct: 119 ALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEG 178 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAP 235 + ++SFL+ Q+R L VG G T ++ L++QD K +AP Sbjct: 179 SRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAP 238 Query: 236 PEGLYFDSVEYS 247 GL+ SV Y Sbjct: 239 ARGLFLKSVLYD 250 >gi|319955610|ref|YP_004166877.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237] gi|319424270|gb|ADV51379.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237] Length = 264 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 18/262 (6%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGV 55 M R Y + +++ G Y GWQ+Q +I+ + K + F++ + + GAGRTD+ V Sbjct: 1 MQRIRYYYLVKLQFLGFRYSGWQKQPGQKTIEAMLVKTLKFILPDQKFKILGAGRTDAKV 60 Query: 56 HALRQVAHFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AL L + N L I IL+++ VD+ F+ ++ + Y+ Sbjct: 61 SALDAAFELYLDDTPIEVLEDFLALFNKNL--PPDIRILSMTEVDESFNIIQNSKEKEYI 118 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + +LD + M+ A++ G H+F ++ + + + IRT++ Sbjct: 119 YLFSFGEKSHPFCAPYLVTFLDNLDLDKMKTVAKYFEGTHNFKSYTARIQENTKVIRTVN 178 Query: 174 HFDVNSF---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + V F+ QIR +G L VG G+ + ++ +L+ Sbjct: 179 SCGIIENKILEANFFPEKSYAFHVKGEGFMRYQIRMMMGVLVQVGKGELSEEEVLNSLKE 238 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 ++ + +AP GL + V++ Sbjct: 239 ENNMQLPFVAPGSGLILNQVDF 260 >gi|195375299|ref|XP_002046439.1| GJ12898 [Drosophila virilis] gi|194153597|gb|EDW68781.1| GJ12898 [Drosophila virilis] Length = 513 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 125/301 (41%), Gaps = 58/301 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + + RT Sbjct: 1 MRRYLLNIAYIGTNFRGIQKTVNKLEEARLDTNSVQGCLELALRVFRPKNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + L LN L + I +L+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERSDNKFYDTTTLTGVLNRTLDKQNLPIRVLSTQRVPDTFHCRYH 120 Query: 107 AIRRSYLYRIITRQA-------PLALEKGRAWLIP------------KSLDCENMRIAAQ 147 AI R+YLYR+ + KG +P + D E ++ AA+ Sbjct: 121 AIGRTYLYRVAVAKNVTQSNTINSLRNKGYESFVPVEEIDRCYFLQNNNFDIERLKNAAR 180 Query: 148 HLVGRHDFTTFRSIHCQASS-------PIRTIDHFDVN---------------SFGNLIE 185 +G HDF +F S+ Q S +R ID ++ + + Sbjct: 181 MFLGVHDFRSFMSVSRQKSPSRDHPMFTVRKIDEINIRAGQSLALGPNATLASQIYDYWD 240 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFD 242 I + A+SFL+ Q+R VG+L + +G+ + + L + P +AP GLY Sbjct: 241 IEIKAKSFLYKQVRRIVGTLLALANGRIDERCIYEMLTIPSKHTWEPRILVAPASGLYLC 300 Query: 243 S 243 Sbjct: 301 R 301 >gi|291276765|ref|YP_003516537.1| putative tRNA pseudouridine synthase [Helicobacter mustelae 12198] gi|290963959|emb|CBG39798.1| putative tRNA pseudouridine synthase [Helicobacter mustelae 12198] Length = 245 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 11/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+ I Y+GS +FG+ +Q +G S+ ++E A+ G + GAGRTD GVHA Sbjct: 1 MMFIAAKIAYDGSKFFGFAKQDDGHKSVVQALEFAL-KSLGITSNIIGAGRTDRGVHATG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV ++ W L LN L S I + + V+ FH RFSA +R Y Y Sbjct: 60 QVIRVEIPDFWELERLRNLLNQKLHPS--IFLRRIWRVEASFHPRFSAKKREYRYIFGNY 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 D + + A VG+ DF F + IR I H + + Sbjct: 118 LG-NVWMASYVSWERYG-DKKRISEALNLFVGKRDFGYFCKSGSDNKTTIRQIYHTRLYT 175 Query: 180 F----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + A FL+ QIR +G++ + T +LE + A+ R P A Sbjct: 176 HQIFKHDYLVACIQANGFLYGQIRLMMGAVLAYSRKELTYEELELQVLAKKRFYSIP-AS 234 Query: 236 PEGLYFDSVEY 246 P GLY + Y Sbjct: 235 PNGLYLSKIFY 245 >gi|222834648|gb|EEE73111.1| predicted protein [Populus trichocarpa] Length = 225 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 24/210 (11%) Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + P + N +L I++ V FH+R A R Y Y ++ Sbjct: 2 QVVHFDTPLDRAPFSWVRGTNTFL--PPDIAVQWAQPVPDAFHSRACATARRYAYVLLQS 59 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++E GR + +LD + M+ AAQHL+G HDF++FR+ CQA SP++T+ + Sbjct: 60 PVRPSVEAGRVGWVFHALDGDAMQAAAQHLLGEHDFSSFRASGCQAKSPVKTLHRLSITR 119 Query: 180 F--GN--------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 G+ +FLH +R+ +G L +G G + Sbjct: 120 RMAGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGAYAPQW 179 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +++ L A+ R P P+GLYF Y Sbjct: 180 MQQVLDARSRDAAAPTFSPDGLYFLGPVYD 209 >gi|240167785|ref|ZP_04746444.1| tRNA pseudouridine synthase A [Mycobacterium kansasii ATCC 12478] Length = 248 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 14/230 (6%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLK------ 84 ++ A+ + + + AGRTD+GVHA QVAH D+ + +P ++ A Sbjct: 2 LDAALTTIFRTPIRLRAAGRTDAGVHASGQVAHADVPVDALPNAYSHSVRAGHPEFRPLV 61 Query: 85 ------ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSL 137 + + ++++ + F ARFSA+ R Y+YR+ T + P+ L Sbjct: 62 RRLSRFLPSDVRVIDIVRAPRDFDARFSALCRHYVYRLSTAPYGVVPQLARYVTAWPRDL 121 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 D E M IA++ L+G HDF F H ++ IR + D G+L+ V A +F + Sbjct: 122 DVEAMTIASRELLGLHDFAAFCR-HRDGATTIRDLQRLDWARDGDLVTAHVTADAFCWSM 180 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +RS VG++ VG+ + ++ + L A R AP GL V+Y Sbjct: 181 VRSLVGAVLAVGEHRRSTAWCRELLTATGRSSDFAAAPAHGLTLVQVDYP 230 >gi|297666734|ref|XP_002811665.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Pongo abelii] Length = 287 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 27/243 (11%) Query: 30 SIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVR-----EWVPVILCKALNAYL 83 +++A + E V + RTD+GVHAL AH D+ R + P +L + LN +L Sbjct: 27 VLQEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEVLNRHL 86 Query: 84 KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP----LALEKGRAWLIPKS-LD 138 + I +L V FHAR +A R YLYR+ T E+ W +P LD Sbjct: 87 RHP-AIRVLRAFRVPSDFHARHAATSRIYLYRLATGCHRRDELPVFERNLCWALPADCLD 145 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-------------NLIE 185 ++ AAQHL+G HDF+ F+S SP+RT+ V+ Sbjct: 146 VVAVQEAAQHLLGTHDFSAFQSTGSPVPSPVRTMRRVSVSPGQASPLVTPEESRKLRFWN 205 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDS 243 + ++SFL+ Q+R L VG G ++ L++QD K +AP GL+ S Sbjct: 206 LEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKS 265 Query: 244 VEY 246 V Y Sbjct: 266 VLY 268 >gi|120436099|ref|YP_861785.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] gi|117578249|emb|CAL66718.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] Length = 262 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 103/262 (39%), Gaps = 15/262 (5%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGV 55 M R Y + ++Y G GWQ+Q + +++G + K + ++ + G RTD+ V Sbjct: 1 MFRKRFYYFIKVQYLGYRLHGWQKQPDVKTVEGLVTKTLGWVIPDAKYKILGTSRTDAMV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A L E + + + I L++ VD +F+ + + Y Y Sbjct: 61 SAEESAFELFLDHEPLEDLDGFLHLFNKNLPQDIRALSIEEVDDKFNIIQHSKTKEYAYL 120 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + LD + M+ AA+ G H+F + + S+ R + Sbjct: 121 FSIGDKFHPFCAPFMANFQEDLDVDRMKEAAKLFHGIHNFRNYCIRVSEKSTFEREMLKS 180 Query: 176 DVNSFGNL---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 ++ + A FL Q+R +GSL LVG G+ + D+E +L+ Sbjct: 181 ELVENDIYTANFFPEKSYIFHIHASGFLRHQVRLMMGSLVLVGRGELSLQDIEDSLKPDS 240 Query: 227 RK-ECGPLAPPEGLYFDSVEYS 247 + + +AP GL +E+ Sbjct: 241 PQLQMDYIAPASGLILRKIEFE 262 >gi|325287844|ref|YP_004263634.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] gi|324323298|gb|ADY30763.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] Length = 270 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 14/255 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + +++ G + GWQ+Q +I+G + K + + E + GAGRTD+ V AL Sbjct: 14 YLIRLQFLGYRFSGWQKQPGYKTIEGMLAKTLKFILPERQYKILGAGRTDAKVSALDAAF 73 Query: 63 HFDLVREW--VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 L E K N L I I+++ V ++F+ + + Y+Y + Sbjct: 74 ELFLDGEPLQDLDFFLKDFNKNL--PSDIRIVSVKHVKEKFNIIQHSKEKEYVYLFSFGE 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 I +LD + M+ A VG H+F +F + + IR ++ ++ Sbjct: 132 KNHPYTAPFMANIQDNLDLDLMKKATSLFVGTHNFKSFTAKPKENGKFIRKVNSAEIKEN 191 Query: 181 ---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + F+ Q+R +G+L +G G+ T +D+E+AL+ + Sbjct: 192 TILKANFFPKKSYAFHIKGEGFMRYQVRMLMGALIQLGKGEVTLSDIEEALKPNSTTKFV 251 Query: 232 PLAPPEGLYFDSVEY 246 +AP GL S+++ Sbjct: 252 FVAPGSGLMLHSLDF 266 >gi|118474657|ref|YP_891922.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. fetus 82-40] gi|166228690|sp|A0RNY9|TRUA_CAMFF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118413883|gb|ABK82303.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. fetus 82-40] Length = 258 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 108/266 (40%), Gaps = 28/266 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ + YNGS + G Q Q + ++++ + A+ V G V + RTD GVHA+ Q Sbjct: 1 MMKIALTYSYNGSKFKGSQTQPDKNAVEDCLNFALNRV-GIFKPVVSSSRTDKGVHAISQ 59 Query: 61 VAHFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V+ + W L +N + K I I N+ V +FH R+ A+ RSY Y I Sbjct: 60 VSCVECGEFWNERFERLKNQINKHTK--PYIYIKNIQKVSDEFHPRYDAVARSYRYIIYH 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 + K+L+ + + IA + +G+HDFT F + S +R I + Sbjct: 118 DEQ-NVFLADYV-HFYKTLNIQRLNIALKLFIGKHDFTPFYKVGSGEKSTVREIFYAKAY 175 Query: 178 ---------------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 L I A FL Q+R V + + +L K + Sbjct: 176 QIYKTKDAKFSAKFKTQKPTLTIINFKANGFLRAQVRLMVANALQACK---SDENLYKFI 232 Query: 223 QA--QDRKECGPLAPPEGLYFDSVEY 246 + + +PP GLY V Y Sbjct: 233 SNFKEQKPLTRMPSPPNGLYLKRVFY 258 >gi|124486487|ref|YP_001031103.1| tRNA pseudouridine synthase ACD [Methanocorpusculum labreanum Z] gi|166228737|sp|A2SU30|TRUA_METLZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124364028|gb|ABN07836.1| tRNA pseudouridine synthase A [Methanocorpusculum labreanum Z] Length = 281 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 32/249 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGS-----IEKAIFLVTGEIVVVHGAGRTDSGVH 56 ++ + Y G + G Q Q + +++G IE +F E AGRTD GV Sbjct: 1 MKLAFLAGYRGQNFAGSQYQPHKRTVEGEFVAGGIELGLFSDAKE-AHFRTAGRTDKGVS 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A RQ+ + P + +ALN +L D I + + VD++F+ R++A RSY Y Sbjct: 60 ARRQLFSITTEK---PELAIEALNFHL--PDDIWCIGAAEVDEEFYPRYAARERSYRYY- 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P D M+ AA L+G H+F+ F + P+RT+ + Sbjct: 114 ----------------FPYPADVSRMQDAASRLIGTHNFSGFAKMEA-GRDPVRTVTRAE 156 Query: 177 VNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V + V A+SFL +R G+L+ +G G +E+ L + AP Sbjct: 157 VFEGKDGCPVFEVAAKSFLWNMVRGMAGALQTIGLGLCEPDVIEELLSSP--TARVHPAP 214 Query: 236 PEGLYFDSV 244 EGL F V Sbjct: 215 AEGLVFWDV 223 >gi|126180241|ref|YP_001048206.1| tRNA pseudouridine synthase ACD [Methanoculleus marisnigri JR1] gi|166228738|sp|A3CXX4|TRUA_METMJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125863035|gb|ABN58224.1| tRNA pseudouridine synthase A [Methanoculleus marisnigri JR1] Length = 270 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 96/250 (38%), Gaps = 31/250 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 + Y G +FG Q Q + +++G A L+ AGRTD GVHA Sbjct: 1 MNLAFRFSYFGDRFFGSQMQPDLCTVEGEFIGACRLLRLFDDWREANFATAGRTDRGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F + P +ALN L I + FH R+SA+ R+Y Y Sbjct: 61 RSQVCSFLTDK---PERAIEALNRVL--PADIWCTGWAEAPDGFHPRYSAVSRTYRYYFS 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 D M AAQ +GRHDF+ F + +P R I V Sbjct: 116 -----------------APGDAAAMHEAAQEFLGRHDFSAFARAGDR--NPERRILASRV 156 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPP 236 G V SFL +R L VG G+ + ++ + L +R+ APP Sbjct: 157 FIDGEFAVFEVTGESFLWNMVRCMATMLGRVGRGEAEAGEIARLLTGPVERRVAA--APP 214 Query: 237 EGLYFDSVEY 246 EGL ++Y Sbjct: 215 EGLILWDIDY 224 >gi|241745612|ref|XP_002412440.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215505839|gb|EEC15333.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 350 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 49/293 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLV--TGEIVVVHGAGRTDSGV 55 RY + Y G+ Y G QRQ + ++QG+IE A+ + E V++ A RTD+GV Sbjct: 4 RYLLKFSYLGTRYRGMQRQSSRPCLENWTVQGAIEGALRNLRPLSEPVLIL-ASRTDTGV 62 Query: 56 HALRQVAHF-----DLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIR 109 HA H + + + P+ + LN + + I + + V FHAR+ A Sbjct: 63 HASLSAGHVDLVPANTAQCYQPLQIFSVLNRHFARRDHDIVVREVLPVPSWFHARYLAKS 122 Query: 110 RSYLYRI---------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 RSY+YR+ T + L L + + LD + A + L G HD Sbjct: 123 RSYVYRVAVLRPHVLEQSTVLGTTIRHLLPLNEINSCCAVPPLDFSRVHEAMELLSGEHD 182 Query: 155 FTTFRSIHCQAS----SPIRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQ 197 F TF+++ + + +R + F + +L E + +RSFL+ Q Sbjct: 183 FRTFKNVGRTKAEDEVNTVRNVLDFTLRPSQPASAVADPLYDNVDLWEFHIKSRSFLYRQ 242 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFDSVEYS 247 +R V + VG + + + L+ + +AP GLY ++EY Sbjct: 243 VRRMVSVVLHVGMHPESLPLVRRMLENPHKDSWDNKVRIAPACGLYLTNIEYD 295 >gi|268679755|ref|YP_003304186.1| tRNA pseudouridine synthase A [Sulfurospirillum deleyianum DSM 6946] gi|268617786|gb|ACZ12151.1| tRNA pseudouridine synthase A [Sulfurospirillum deleyianum DSM 6946] Length = 247 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 12/252 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 +R +I+ Y+GS ++G+QRQ N + ++ G +EK++ G + G+GRTD GVHA Sbjct: 1 MRVKLILSYDGSHFYGFQRQNNENEHFQTVTGILEKSL-KALGIHTPIVGSGRTDRGVHA 59 Query: 58 LRQVAHFDLVREWVPV--ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 LRQV H DL W L LN L I + FHARFSA +R Y Y Sbjct: 60 LRQVVHLDLPLFWEKEYEKLRSLLNRSLMPHLYI--QQIHPTLPNFHARFSAQKRLYRYF 117 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + A + +LD + + AQ G H+F F+ + R + Sbjct: 118 LYDG-VYQPFYAHYALHV-NALDVQRLHHVAQSFQGAHNFEFFKKQGGGLTRDERILYKV 175 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +LI I + +FL +QIR +L V + +L L+ +++K L P Sbjct: 176 GAYRYKHLIVIYFLGDAFLRSQIRMMCDALLKVCYDEIREEELIAQLR-REKKVSTTLLP 234 Query: 236 PEGLYFDSVEYS 247 P GLY + Y Sbjct: 235 PSGLYLSRIFYE 246 >gi|89890078|ref|ZP_01201589.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] gi|89518351|gb|EAS21007.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] Length = 267 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 92/251 (36%), Gaps = 13/251 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G + GWQ+Q + +++ +++ + V V AGRTD+ V + Sbjct: 11 YLIKLQYLGFRFHGWQKQPDVPTVEKMVKRTLRFVLDHHNFKVLAAGRTDARVSVNETII 70 Query: 63 HFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L E N L + I L++ + QF+ + Y+Y + Sbjct: 71 ELFLDDEALNLDTFLAEFN--LNLPSDIRALDIEETNAQFNVIQHPKEKEYIYLFSHGEK 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 + LD E M+ AA+ G H+F ++ + + T++ + Sbjct: 129 FHPFCASLMVYMKTELDIELMKTAARLFEGTHNFWSYTYKPSDTTDTVSTVNSCHIEENN 188 Query: 181 --------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 RV F Q+R +G+L +G K T D + L + Sbjct: 189 LFTANFFPEESFVFRVTGMGFKRHQVRLMMGALFDLGMHKITLEDFKATLDGSKKIHLSH 248 Query: 233 LAPPEGLYFDS 243 +AP GL Sbjct: 249 IAPASGLMLYR 259 >gi|224418450|ref|ZP_03656456.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|253827766|ref|ZP_04870651.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|313141982|ref|ZP_07804175.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|253511172|gb|EES89831.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|313131013|gb|EFR48630.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] Length = 240 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 107/248 (43%), Gaps = 10/248 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI+ M I Y G +FG+QRQK+ +I G +E+ F G V G+GRTD GVHA Q Sbjct: 1 MIKVAMRIAYYGGEFFGFQRQKDKITICGVLEEV-FRSVGIFDVCMGSGRTDKGVHASAQ 59 Query: 61 VAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V + L + LN L I I + V+ +FH RFS RR Y Y + + Sbjct: 60 VISVSIPEFHRDLQRLKQLLNVKLYPW--IKIKQIWQVENEFHVRFSVKRRGYCYVLSQK 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVN 178 +P + + ++ + G +DF+ F +R I H + Sbjct: 118 YSPFLALFSHFYPLKNPF---LVQESLDIFRGVYDFSAFMKNGGSGCEGSVREIFHTKLL 174 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I FL +QIR VG L + G DL+K L + K APP G Sbjct: 175 KRGEFYLISFWGNGFLRSQIRLMVGFLLEIDRGNLGIEDLKKQLLGE--KIFSIPAPPNG 232 Query: 239 LYFDSVEY 246 L+ V+Y Sbjct: 233 LFLSRVDY 240 >gi|154174016|ref|YP_001408137.1| tRNA pseudouridine synthase A [Campylobacter curvus 525.92] gi|153793037|gb|EAU00484.2| tRNA pseudouridine synthase A [Campylobacter curvus 525.92] Length = 241 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 98/246 (39%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q Q + + +Q ++ +A+ V G + + RTD GVHA Q Sbjct: 1 MKIQLIFSYDGSKFQGSQTQPHENGVQDALSRALAHV-GIFDKLALSSRTDKGVHATAQS 59 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + L +N + I I N+ V+ F AR+ A R Y Y I + Sbjct: 60 ATVECGEHFKDLDRLKNLINRH--AHPFIHIKNIKRVNDDFQARYDAKARLYRYIIDHGR 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PK D + +G HDF+ F SPIR I + Sbjct: 118 Y-DVFHAEHCLFAPK-FDTARANHILKIFIGEHDFSAFMKTGSGTKSPIREIYKAYCYEY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N I A FL Q+R V SL + K L A+ + P A +GLY Sbjct: 176 KNKTVIVFKANGFLRAQVRLMVASLLKALNLKDGDELLNLAINHKKPLTRIPAA-AQGLY 234 Query: 241 FDSVEY 246 V Y Sbjct: 235 LSRVFY 240 >gi|195012380|ref|XP_001983614.1| GH25313, isoform B [Drosophila grimshawi] gi|193897096|gb|EDV95962.1| GH25313, isoform B [Drosophila grimshawi] Length = 317 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 80/304 (26%), Positives = 122/304 (40%), Gaps = 58/304 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +SIQG +E A+ + + + + RT Sbjct: 1 MHRYLLNISYIGTNFRGIQKTINKLEEARLDTNSIQGCLELALRVFRPKNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + L LN L I IL+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERSDGKPYDTSTLTGVLNRTLDKHKLPIRILSSQRVVDTFHCRYH 120 Query: 107 AIRRSYLYRIITRQ------------------APLALEKGRAWLIP-KSLDCENMRIAAQ 147 A R+YLYR+ + E R + + + D E + AA+ Sbjct: 121 ATGRTYLYRVAVAKSVSEASKGSSLKNKGYESFVPVEEIDRCYFLHCDNFDVERLHGAAR 180 Query: 148 HLVGRHDFTTFRSIHCQASS-------PIRTIDHFDVN---------------SFGNLIE 185 +G HDF TF S+ Q S +R ID ++ + + Sbjct: 181 MFLGLHDFRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGQTLALGPNAKLATQTYDYWD 240 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFD 242 I + A+SFL+ Q+R VG+L + + + + + L + +AP GLY Sbjct: 241 IEIKAKSFLYKQVRRIVGTLLALANSRIDERCIYQMLTIPSKHNWDSRVVVAPACGLYLC 300 Query: 243 SVEY 246 V Y Sbjct: 301 RVHY 304 >gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi] gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi] Length = 430 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 107/263 (40%), Gaps = 37/263 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G Y G +Q + +I+ + +A+ + + GRTD GV AL Sbjct: 70 IALKIAYLGFNYQGLSKQLHTPNTIEHHLFEALKTLKLIEHEDNCEFTKCGRTDKGVSAL 129 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F+ + +N+ L D I +L V K F ARF ++R+Y Y Sbjct: 130 GQVVSFNCRYNPKKNDYVRLINSLL--PDDIRVLAWCPVSKDFDARFGCLQRTYKY---- 183 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV- 177 + I ++L+ E M+ AA H VG HDF F I+ + ++ R I ++ Sbjct: 184 ------------YFIRQNLNIEKMKQAAAHFVGEHDFRNFCKINEEVTNFRRRILSMEII 231 Query: 178 -----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + + + EI V SFL Q+R L L+G+GK + + + L + Sbjct: 232 KSDLLHQQHGNDEYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGKEEPSVIPELLDIEK 291 Query: 227 RKE--CGPLAPPEGLYFDSVEYS 247 K +A L + Sbjct: 292 YKARPVYHIASEFPLVLYDCVFE 314 >gi|194746922|ref|XP_001955903.1| GF24924 [Drosophila ananassae] gi|190623185|gb|EDV38709.1| GF24924 [Drosophila ananassae] Length = 307 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 87/303 (28%), Positives = 126/303 (41%), Gaps = 57/303 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQR------QK--NGSSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ Q + ++IQG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTSFRGIQKTVNKSEQPRLDTNTIQGCLELALRVFRPTNDIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + L LN L I IL+ +V FH R+ Sbjct: 61 DAGVHALHSTVHVDLQRYDGQPYDTGTLTGVLNRTLDKQRLPIRILSSQVVSDSFHCRYH 120 Query: 107 AIRRSYLYRIITRQAPLALEKG-----------------RAWLIPK-SLDCENMRIAAQH 148 A R+YLYR + A+E G R + + S D E +R AA+ Sbjct: 121 ATGRTYLYRFAVSRNTGAVESGNLRNKGYESFIPVEELDRCYFLQSTSFDIERVRNAARM 180 Query: 149 LVGRHDFTTFRSIHCQASS-------PIRTIDHFDVNS---------------FGNLIEI 186 +G HDF TF S+ Q S +R ID + + EI Sbjct: 181 FIGVHDFRTFMSVSRQKSPSRDHPRFTLRKIDDISIRPGRALAVAGNAALAANSYDYWEI 240 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDS 243 + A+SFL+ Q+R VG+L +G G+ + + L + LAP GLY Sbjct: 241 EIRAKSFLYKQVRRIVGTLLALGCGRIDEKSVYQMLTIPSKNSWDHRVLLAPACGLYLCR 300 Query: 244 VEY 246 V Y Sbjct: 301 VHY 303 >gi|167583949|ref|ZP_02376337.1| tRNA pseudouridine synthase A [Burkholderia ubonensis Bu] Length = 193 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 83/167 (49%) Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE 140 + T+++ + FHARFSA R+Y Y + + RA I LD + Sbjct: 1 TNAFLPPTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPVRSPMLDARAGWIHTPLDDD 60 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G+ + R A +FLH +R+ Sbjct: 61 AMRAAAAHLIGEHDFSAFRSSECQSKTPVKHLYQIDIRRAGHFLHFRFRANAFLHHMVRN 120 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +G L VG G++ + + L +DR P +GLY V Y Sbjct: 121 LMGCLVAVGRGRYPAEWIADVLAGRDRNRAAPTFMADGLYLAHVGYP 167 >gi|51246208|ref|YP_066092.1| tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] gi|62901427|sp|Q6AKP0|TRUA2_DESPS RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|50877245|emb|CAG37085.1| related to tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] Length = 261 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 110/262 (41%), Gaps = 21/262 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDS 53 M + + I Y G+ YFGWQ Q + +++G+I A+ +T + V GA RTD Sbjct: 1 MNYFRVKIAYKGTHYFGWQAQSIDTLHEEKPTVEGTILNALKKITNYQPCTVSGASRTDG 60 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA Q+A + ++ P L + I IL K++ A ++ + Y Sbjct: 61 GVHARGQIAKITISQKISPEHLLLG--LNSLLPTDIRILECVPSTKEYQASRGSVSKEYH 118 Query: 114 YRIITRQAPLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y I A +P D +R A + VGRHDF F S + Sbjct: 119 YYFIASPVDNVATSDIALHLPIDSIGPDDLALLRSACRLFVGRHDFYNFSSRGS--GTSF 176 Query: 170 RTIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 R I + D++ ++ ++++ FL IR +G+L + G+ D+ LQ Sbjct: 177 REIFYCDIHRANFSPLANDMFYLKIIGDGFLKYMIRYIMGALLELVRGRIVLDDISLYLQ 236 Query: 224 AQDRKECGPLAPPEGLYFDSVE 245 + P A +GL+ +E Sbjct: 237 QHQEDKLSPRAKAKGLHLIRIE 258 >gi|261885752|ref|ZP_06009791.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 257 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 107/265 (40%), Gaps = 28/265 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + YNGS + G Q Q + ++++ + A+ V G V + RTD GVHA+ QV Sbjct: 1 MKIALTYSYNGSKFKGSQTQPDKNAVEDCLNFALNRV-GIFKPVVSSSRTDKGVHAISQV 59 Query: 62 AHFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + + W L +N + K I I N+ V +FH R+ A+ RSY Y I Sbjct: 60 SCVECGEFWNERFERLKNQINKHTK--PYIYIKNIQKVSDEFHPRYDAVARSYRYIIYHD 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + K+L+ + + IA + +G+HDFT F + S +R I + Sbjct: 118 EQ-NVFLADYV-HFYKTLNIQRLNIALKLFIGKHDFTPFYKVGSGEKSTVREIFYAKAYQ 175 Query: 178 --------------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 L I A FL Q+R V + + +L K + Sbjct: 176 IYKTKDAKFSAKFKTQKPTLTIINFKANGFLRAQVRLMVANALQACK---SDENLYKFIS 232 Query: 224 A--QDRKECGPLAPPEGLYFDSVEY 246 + + +PP GLY V Y Sbjct: 233 NFKEQKPLTRMPSPPNGLYLKRVFY 257 >gi|116007752|ref|NP_001036574.1| CG34140 [Drosophila melanogaster] gi|113194868|gb|ABI31225.1| CG34140 [Drosophila melanogaster] gi|238231868|gb|ACR40402.1| RE01995p [Drosophila melanogaster] Length = 306 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 124/301 (41%), Gaps = 55/301 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N SIQG +E A+ + + + RT Sbjct: 1 MYRYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTNEIHTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL DL R + IL LN L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRYD 120 Query: 107 AIRRSYLYRIITRQAP----------------LALEKGRAWLIPKS-LDCENMRIAAQHL 149 AI R+YLYR + P E R + + S D + ++ AA+ Sbjct: 121 AIGRTYLYRFAVAKVPTLGDCSLRNRSFETFIPVEEIDRCYFLQSSSFDIKRVQAAARMF 180 Query: 150 VGRHDFTTFRSIHCQASS------PIRTIDHFDVNSFG---------------NLIEIRV 188 +G HDF TF S+ Q +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVCRDHPMFTVRKIDEINIRPGETRALSSNAIQAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVE 245 A+SFL+ Q+R VG+L +G+G+ L + L + LAP GLY V Sbjct: 241 RAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDHRVLLAPACGLYLCRVH 300 Query: 246 Y 246 Y Sbjct: 301 Y 301 >gi|86130141|ref|ZP_01048741.1| tRNA pseudouridine synthase A [Dokdonia donghaensis MED134] gi|85818816|gb|EAQ39975.1| tRNA pseudouridine synthase A [Dokdonia donghaensis MED134] Length = 259 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ+Q + +++ +E+ V + +GRTD+ V A Sbjct: 8 YLLKIQYLGFRYHGWQKQPDVLTVERMMERTFSYVLDRKNFKLLASGRTDAKVSANVAYV 67 Query: 63 HFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L LN L I L ++ VDK+F+ + I + Y+Y + Sbjct: 68 ELFLNDSPLPAEGFLTLLNDNL--PQDIRCLQITQVDKKFNVMDAPIAKEYVYLFSYGEK 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 I LD E M+ AA+ G HDF ++ + I + + Sbjct: 126 NHPFAAPYMINIAGDLDIELMKEAARLFEGEHDFRSYAYKPNPQTQTIGHVLSSTIEIND 185 Query: 182 ---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 RV + F QIR +G+L +G G +K L A + + Sbjct: 186 LYTASFFPEESYAFRVSGKGFKRHQIRLMMGALFDLGQGNIDLEFFKKTLDASNDIKLTR 245 Query: 233 LAPPEGLYFDSV 244 +A GL V Sbjct: 246 IAQASGLLLQDV 257 >gi|195135262|ref|XP_002012053.1| GI24889, isoform B [Drosophila mojavensis] gi|193918317|gb|EDW17184.1| GI24889, isoform B [Drosophila mojavensis] Length = 320 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 82/307 (26%), Positives = 126/307 (41%), Gaps = 61/307 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTRFRGIQKTINKLEESRVDTNSVQGCLELALRVFRPVNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + IL LN L S I +L+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERNDGKCYDTTILTGVLNRTLDKQSLPIRVLSTQRVADTFHCRYH 120 Query: 107 AIRRSYLYRIITRQAP---------------------LALEKGRAWLI-PKSLDCENMRI 144 AI R+YLYR+ + E R + + + D E + Sbjct: 121 AIGRTYLYRVAVSKQKTTVLPDAKSSSLRNRAFEAFLPVEEWDRCYFLQNNNFDIERLIA 180 Query: 145 AAQHLVGRHDFTTFRSIHCQASS-------PIRTIDHFDVN---------------SFGN 182 A++ L+G HD+ TF S+ Q S +R ID ++ + Sbjct: 181 ASRMLIGVHDYRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGRSLALGPNATLATENYD 240 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGL 239 +I + A+SFL+ Q+R VG+L + +G+ + + L + LAP GL Sbjct: 241 YWDIEIKAKSFLYKQVRRIVGTLLALAEGRIDERCIYQMLTIPSKHSWDHRIQLAPACGL 300 Query: 240 YFDSVEY 246 Y V Y Sbjct: 301 YLCRVHY 307 >gi|284166628|ref|YP_003404907.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Haloterrigena turkmenica DSM 5511] gi|284016283|gb|ADB62234.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Haloterrigena turkmenica DSM 5511] Length = 295 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 107/266 (40%), Gaps = 30/266 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 M I Y+G+GY G+QRQ + +++ +I A+ + AGRTD+G Sbjct: 1 MPTRAFRIAYDGTGYHGFQRQPDVPTVEDAIFDALRDLEVLAADADRPDGYAAAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V AL Q + P +ALN L I + +FHA A RR Y Y Sbjct: 61 VSALAQTVALEAPDWLTP----RALNGEL--PADIRAWAAADAPPEFHATHHAERREYAY 114 Query: 115 RIITRQAPLALEKGRAWLI-----------PKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 + A + + RA + +++D + R A + L G HD F ++ Sbjct: 115 HLYAPPA-DSRRRDRAAPVSDRAGTRGSPGQRAVDDDRFRAACEALSGSHD---FHNLTP 170 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + R+ + G+ + + V A F+ +R V + VG G +++A Sbjct: 171 DDRNTERSPT-LEAIRDGDFLVVTVTAGGFVRELVRRLVSLARAVGTGDAPLEKIDRAFD 229 Query: 224 AQDR--KECGPLAPPEGLYFDSVEYS 247 + E APPE L +V+Y Sbjct: 230 PEPLPGHEGVAPAPPEPLVLTAVDYP 255 >gi|154149764|ref|YP_001403382.1| tRNA pseudouridine synthase ACD [Candidatus Methanoregula boonei 6A8] gi|153998316|gb|ABS54739.1| tRNA pseudouridine synthase A [Methanoregula boonei 6A8] Length = 276 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 99/247 (40%), Gaps = 30/247 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHA 57 +R + Y G+ ++G Q+Q++ +++G +A + AGRTD GVHA Sbjct: 15 VRLACRVSYLGTRFYGSQQQESSRTVEGEFIEACRRLALFSDWRTAGFASAGRTDRGVHA 74 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F P +ALN+ L I ++V FH R+ A R+Y Y Sbjct: 75 CGQVIAFSTQ---TPDRARQALNSQL--PPDIWCTATAVVPDHFHPRYDARSRTYRY--- 126 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D M AA+ G H+FT F + +P R I + Sbjct: 127 -------------YFGEPPRDPVAMETAAREFSGDHNFTNFARVGD--KNPWRKILEIRI 171 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-QAQDRKECGPLAPP 236 + G+ + V A+SFL Q+R + G G+ + + L +A R AP Sbjct: 172 GTEGSFTYLEVKAQSFLWHQVRCMAAAALSAGMGEQDADGIRLLLNEAASRP--IQPAPA 229 Query: 237 EGLYFDS 243 EGL Sbjct: 230 EGLVLWD 236 >gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis] Length = 505 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 105/265 (39%), Gaps = 39/265 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G GY G+ Q+N ++++ ++ A+ + + H GRTD GV AL Sbjct: 64 VALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRLVESRQTSNYHRCGRTDRGVSAL 123 Query: 59 RQVAHFDLV---REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV DL + LN L I +L+ + V F ARFS R+Y Y Sbjct: 124 GQVISLDLRCSGEGKPEIRYVHILNRVL--PPDIRVLSWAAVPPSFSARFSCRSRTYRYL 181 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTID 173 Q LD E M AA+ L G HDF + + IRT+ Sbjct: 182 FSCAQ----------------LDVEAMDKAARLLEGTHDFRNLCKMDVANGVMNFIRTVL 225 Query: 174 HFDVNSFGN---------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ- 223 V L +++ +FL+ Q+R +G L LVG GK + + L Sbjct: 226 SARVEPVPEIPGDMGPFQLYRLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDV 285 Query: 224 AQD-RKECGPLAPPEGLYFDSVEYS 247 A++ RK +A L + + Sbjct: 286 AKNPRKPQYNMAVEFPLVLYNCHFD 310 >gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis] gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis] Length = 505 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 105/265 (39%), Gaps = 39/265 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G GY G+ Q+N ++++ ++ A+ + + H GRTD GV AL Sbjct: 64 VALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRLVESRQTSNYHRCGRTDRGVSAL 123 Query: 59 RQVAHFDLV---REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV DL + LN L I +L+ + V F ARFS R+Y Y Sbjct: 124 GQVISLDLRCSGEGKPEIRYVHILNRVL--PPDIRVLSWAAVPPSFSARFSCRSRTYRYL 181 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTID 173 Q LD E M AA+ L G HDF + + IRT+ Sbjct: 182 FPCAQ----------------LDVEAMDKAARLLEGTHDFRNLCKMDVANGVMNFIRTVL 225 Query: 174 HFDVNSFGN---------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ- 223 V L +++ +FL+ Q+R +G L LVG GK + + L Sbjct: 226 SARVEPVPEIPGDMGPFQLYRLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDV 285 Query: 224 AQD-RKECGPLAPPEGLYFDSVEYS 247 A++ RK +A L + + Sbjct: 286 AKNPRKPQYNMAVEFPLVLYNCHFD 310 >gi|94266218|ref|ZP_01289926.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] gi|93453191|gb|EAT03652.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] Length = 319 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + I ++G+ + GWQRQ++ +IQ ++E + + GE VV+HGAGRTD+GVHA V Sbjct: 1 MNIKLTIAFDGTAFAGWQRQRHQPTIQATLEDGLARLLGEKVVLHGAGRTDAGVHAAGMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F R+ LN+ L I IL V FHARFSA + Y+Y T Sbjct: 61 ASFQTARQLPLAAYRHGLNSML--PPAIRILAAREVAADFHARFSAKGKIYVYGFTTAAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + + P S + ++ A L+G HDFT+F + + Sbjct: 119 ISPRRRLYSAHFPGSFNPGPVQEALPGLLGEHDFTSFEAAGSRRR 163 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 32/66 (48%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + V FL +R+ VG+L +G GK T L + L +DR GP AP GL Sbjct: 254 GDDYYLVVAGDGFLRHMVRNLVGTLLEIGRGKRTPESLPQLLAGRDRCRAGPTAPAHGLT 313 Query: 241 FDSVEY 246 V Y Sbjct: 314 LWRVLY 319 >gi|322374719|ref|ZP_08049233.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] gi|321280219|gb|EFX57258.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] Length = 163 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAIAVHGAGRTDSGVHALE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 + + + A P LD E M+ A + L G HDFT Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFT 155 >gi|55379749|ref|YP_137599.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049] gi|62901222|sp|Q5UXW0|TRUA_HALMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|55232474|gb|AAV47893.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049] Length = 275 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 27/255 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 M Y + Y+G Y G+QRQ + +++G + A+ + G AGRTD+G Sbjct: 1 MRAYR--VAYDGQPYHGFQRQPDVDTVEGRLRSALVRLGVCERGEGLPDRYAAAGRTDAG 58 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A Q FD P ++ + + + + V + FHA A R+Y Y Sbjct: 59 VSARTQTVAFDAPAWLSPAAF------NGELPNDVRVWASADVPEDFHATHDAAERTYTY 112 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + AP ++ + +D A L G HD F ++ + RT+ Sbjct: 113 YLY---APADADRPE----HEPVDDGRWADAVDALAGTHD---FHNLTTDETGTERTV-A 161 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK--ECGP 232 D G + +++ A F +R V V DG + +++ L + + P Sbjct: 162 IDWTRDGQFLVVQLTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILSPEPVSGPDGVP 221 Query: 233 LAPPEGLYFDSVEYS 247 APPE L V Y Sbjct: 222 PAPPEPLVLTDVRYP 236 >gi|270014158|gb|EFA10606.1| hypothetical protein TcasGA2_TC012867 [Tribolium castaneum] Length = 315 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 86/296 (29%), Positives = 120/296 (40%), Gaps = 51/296 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--------SIQGSIEKAIFLVTGE-IVVVHGAGRTDS 53 RY + Y G+ + G QRQ G ++QG +E A+ + VV+ + RTDS Sbjct: 5 RYLLHFSYIGTPFMGAQRQVTGRMPRPDDPSTVQGQLEMALKRLNPTNDPVVYLSSRTDS 64 Query: 54 GVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAI 108 GVHAL H DL R E+ P + LN Y ++ I ++ V FH R +AI Sbjct: 65 GVHALNSTCHVDLYRSNELEYEPKTITICLNRYFDKNEVPIRVIKTYWVPPDFHCRHTAI 124 Query: 109 RRSYLYRIITRQA------------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 R+YLYRI + P+ + + S + + M+ AA+ G HDF Sbjct: 125 SRTYLYRIAIAKTGVTEHATILNLLPIEEYQRCLFFYCDSFNIDEMKEAAKVFEGLHDFR 184 Query: 157 TFRSIHCQASSPI--RTIDHFDVN--------------------SFGNLIEIRVVARSFL 194 TF I R + DV +I V A FL Sbjct: 185 TFMGRGSHDPDKITRRVVTRVDVCDGRALTYSSFSWPRFASGSAENYQFYDIYVQATGFL 244 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFDSVEYS 247 + Q+R V SL VG GK T +L+ L+ + P GLY VEYS Sbjct: 245 YRQVRRMVASLIAVGQGKKTRRELKLMLEVPSHRSWDERIKTVPAYGLYLCEVEYS 300 >gi|50364970|ref|YP_053395.1| tRNA pseudouridine synthase A [Mesoplasma florum L1] gi|62901303|sp|Q6F1W2|TRUA_MESFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50363526|gb|AAT75511.1| tRNA pseudouridine synthase I [Mesoplasma florum L1] Length = 251 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 11/253 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-VVHGAGRTDSGVHALR 59 M ++ + +EY+GS + GW Q S+IQG + KAI VT V GA +TD+GVHA+ Sbjct: 1 MFKFLITLEYDGSDFHGWIEQPKTSTIQGELNKAINRVTKNAVFKTIGASKTDTGVHAID 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q DL + KA+N L +TI + ++ V + F+ R + + Y Y I + Sbjct: 61 QKVLLDLGFNPKLDLFKKAINKAL--PETIKVRSIEEVKQDFNIR-DVLYKEYSYTINDK 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-----IHCQASSPIRTIDH 174 + + + + +D + ++ +G H+F F + + IR I+ Sbjct: 118 EYNILSNRFELNWDFEEIDIDKLQNIFNLFIGEHEFKLFSGLNHKELDSNKITTIREIES 177 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG-KWTSTDLEKALQAQDRKECGPL 233 DV + + I A+ F+ QIR V S K ++ ++++ LQ + K Sbjct: 178 IDVKRALDKVVITFKAKGFIRYQIRMIVQSALNCYLNKKISADEIKEKLQGKGNKP-PFN 236 Query: 234 APPEGLYFDSVEY 246 AP +GL + + + Sbjct: 237 APAKGLKLNKIVF 249 >gi|157137669|ref|XP_001657123.1| hypothetical protein AaeL_AAEL003683 [Aedes aegypti] gi|108880780|gb|EAT45005.1| conserved hypothetical protein [Aedes aegypti] Length = 325 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 53/300 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + + Y G+ + G Q+ ++ S++G +E A+ + + RT Sbjct: 1 MNRYLINLSYIGTHFRGIQKNLLKDSGYLEDPHSVEGVLEIALKKFAPVNEFKIKLSSRT 60 Query: 52 DSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + L + LN I IL+ +V HAR Sbjct: 61 DAGVHALHNTVHVDLERPSGKPYKTYKLTQGLNRTFGSQGLPIRILDTKLVPMSCHARLC 120 Query: 107 AIRRSYLYRI------ITRQAPL-ALEK-------GRAWLI-PKSLDCENMRIAAQHLVG 151 A R+YLYR+ + + R + I K D E ++ A G Sbjct: 121 AKSRTYLYRLGVLRPQYCDKVESHPFNRFVPIDEYDRCYFIAHKHFDIERLKRVASTFQG 180 Query: 152 RHDFTTFRSIHC------QASSPIRTIDHFDV---------------NSFGNLIEIRVVA 190 HDF TF S+ S +RTI+H + + + +IR+ Sbjct: 181 YHDFRTFMSVARGNDRQHDPSFTLRTIEHISIDRGISMASAFNREQAERYYDYWDIRIKG 240 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFDSVEYS 247 RSFL+ Q+R VG+ + + + D+ + L ++ +AP GL+ VEY Sbjct: 241 RSFLYKQVRRMVGAWIGAAENRLSERDIYRMLTVPSQRSWCDQAVVAPAYGLFLCRVEYD 300 >gi|307168411|gb|EFN61571.1| tRNA pseudouridine synthase-like 1 [Camponotus floridanus] Length = 305 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 77/284 (27%), Positives = 124/284 (43%), Gaps = 37/284 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFLVTGEIVV---VHGAGRT 51 M+RY + Y G+ Y G Q+Q ++ SIQG++E A+ ++ + ++ + + RT Sbjct: 1 MVRYLLKFSYIGTQYRGLQKQIGNDFVRDTDSIQGALETALLTISPKSLIRPFIILSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFS 106 D+GVHAL H +L + + + +N Y K I +L + + FHAR+ Sbjct: 61 DAGVHALCNTGHVELENKYGQIYDTSRIKQYVNRYFTKCGHNIRLLECIPITQDFHARYC 120 Query: 107 AIRRSYLYRIIT------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 R+Y+YR + + PL L + D + + + +G DFTTF + Sbjct: 121 VKSRTYIYRFMIPKVDEEHRIPLVEGIHTFHLRTYNFDIDRTKRGTKLFMGIKDFTTFSA 180 Query: 161 IHCQASS--PIRTIDHFDVNS------------FGNLIEIRVVARSFLHTQIRSFVGSLK 206 + +R++ F + ARSFL+ QIR VG+L Sbjct: 181 KDEGKRNIRYVRSLHSFTLEETQPLMPFDPLSKHFTYWNFICSARSFLYNQIRRMVGALF 240 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEYS 247 +G GK T D+ LQ P APP GL+ +VEY Sbjct: 241 ALGLGKITEKDIIVMLQVPSHYNWNPHATCAPPHGLHLLNVEYD 284 >gi|94270473|ref|ZP_01291754.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] gi|93450785|gb|EAT01835.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] Length = 319 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + I ++G+ + GWQRQ++ +IQ ++E + + GE VV+HGAGRTD+GVHA V Sbjct: 1 MNIKLTIAFDGTAFAGWQRQRHQPTIQATLEDGLARLLGEKVVLHGAGRTDAGVHAAGMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F R+ LN+ L I IL V FHARFSA + Y+Y T Sbjct: 61 ASFQTARQLPLAAYRHGLNSML--PPAIRILAAREVAADFHARFSARGKIYVYGFTTAAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + + P S + ++ A L+G HDFT+F + + Sbjct: 119 ISPRRRLYSAHFPGSFNPGPVQEALPGLLGEHDFTSFEAAGSRRR 163 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 32/66 (48%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + V FL +R+ VG+L +G GK T L + L +DR GP AP GL Sbjct: 254 GDDYYLVVAGDGFLRHMVRNLVGTLLEIGRGKRTPESLPQLLAGRDRCRAGPTAPAHGLT 313 Query: 241 FDSVEY 246 V Y Sbjct: 314 LWRVLY 319 >gi|288560959|ref|YP_003424445.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium M1] gi|288543669|gb|ADC47553.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium M1] Length = 290 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 50/272 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + + + + AGRTD+GVH Sbjct: 1 MKRTALKIAYIGTHFHGFQRQPDVRTVEEELIYHLRKLEYIDDLKASRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +L D I I+ + V F RF A RR Y Y + Sbjct: 61 SLGNVISFQSEKEVRVNQINNSL------PDDIQIIAWAPVRFGFKPRF-AKRRWYRYIL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + LD + +R A+ G HDFT F + +RTI+ Sbjct: 114 ----------------FEEDLDIDLLRKTAEVFKGTHDFTNFTKRK--QKTTVRTIEDIR 155 Query: 177 V-------------------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + N + I + + SFL +R + V GK T D Sbjct: 156 ITKPIIDEEDKNKKSDFAHLNKSYSPIFVDIYGESFLWNMVRKMMRIFLDVNYGKLTLDD 215 Query: 218 LEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 +E+ L + + + + E L +EY Sbjct: 216 VERLLNPEEGEPRAYIKVVDAENLILMDIEYE 247 >gi|183981112|ref|YP_001849403.1| pseudouridine synthase a, TruA [Mycobacterium marinum M] gi|183174438|gb|ACC39548.1| pseudouridine synthase a, TruA [Mycobacterium marinum M] Length = 237 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 14/217 (6%) Query: 44 VVHGAGRTDSGVHALRQVAHFDLV------------REWVPVILCKALNAYLKISDTISI 91 + AGRTD+GVHA QVAH D+ R P L + + + Sbjct: 2 RLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLRV 61 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLV 150 L+++ F ARFSA+RR Y+YR+ T + + + P+ LD + M +A++ L+ Sbjct: 62 LDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASRELL 121 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 G H+F F + ++ IR + D + G+L+ +V A +F + +RS VG+L VG+ Sbjct: 122 GLHNFAAFCRRR-EGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + T + L A R AP GL V+Y Sbjct: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYP 217 >gi|328783921|ref|XP_001121186.2| PREDICTED: tRNA pseudouridine synthase-like 1-like [Apis mellifera] Length = 313 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 39/285 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTGEIVV---VHGAG 49 M RY + Y G+ Y G Q+ ++ +IQG++E A + + + + + Sbjct: 1 MTRYLIKFSYLGTQYRGMQKNVIQTENVIRDIDTIQGALETAFTTLIPKCIEWPKITCSS 60 Query: 50 RTDSGVHALRQVAHFDL----VREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHAR 104 RTD GVH++ +AH D+ + P K +N Y I +L V K FH R Sbjct: 61 RTDIGVHSMCNLAHIDIKNKYDSIYYPNDTLKYVNRYFFDCHHNIRLLEFIPVKKTFHVR 120 Query: 105 FSAIRRSYLYRIITRQAPLAL-----EKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTF 158 R+YLYR + E R + I + D E ++ A Q +G DF TF Sbjct: 121 KFIHSRTYLYRFSVTKNKDEHRIPITEINRCFHIRSDTFDLERIKRATQLFIGTKDFRTF 180 Query: 159 RS--IHCQASSPIRTIDHFDVN------------SFGNLIEIRVVARSFLHTQIRSFVGS 204 + + + + +R ++ + I +R FL+ Q+R VG+ Sbjct: 181 SAKIVGNKPINYVRNLNSLTIEKGYPLMPNDPLSQNFEYWNIICSSRGFLYKQVRRIVGA 240 Query: 205 LKLVGDGKWTSTDLEKALQAQ---DRKECGPLAPPEGLYFDSVEY 246 L +G GK T D+ LQ + AP GLY +VEY Sbjct: 241 LFALGSGKITEKDITVMLQVPGCHNYLSQIETAPAYGLYLMNVEY 285 >gi|317180826|dbj|BAJ58612.1| tRNA pseudouridine synthase A [Helicobacter pylori F32] Length = 242 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFCTPKHWNAAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +V+ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|305666822|ref|YP_003863109.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] gi|88709046|gb|EAR01280.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] Length = 282 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 99/253 (39%), Gaps = 13/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G + GWQ+Q +++G I K + F++ + AGRTDS V AL Sbjct: 30 YVIKLQYLGFRFSGWQKQPGQKTVEGMITKTLKFILPNSEFKILSAGRTDSKVSALDAAF 89 Query: 63 HFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + N L I ++++ V++ F+ + Y+Y Sbjct: 90 ELFINEPLTDFEAFIGLFNKNL--PSDIRVMSIKEVNEDFNIIQDPKVKEYVYLFSYGSK 147 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 + LD E M+ AA VG HD + + + RTI ++ Sbjct: 148 NHPYSSPFITNVLDELDLELMKKAASLYVGTHDLSVYTVKAQNNAHKKRTITSCEIIENK 207 Query: 181 --------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 RV F+ QIR +G+L +G G+ D+E +L + E Sbjct: 208 ILQANFFPEKSYAFRVEGPGFMRYQIRMMMGALIQLGKGELLFADIENSLSNPESIELTY 267 Query: 233 LAPPEGLYFDSVE 245 +AP GL + ++ Sbjct: 268 VAPGSGLLLNRLD 280 >gi|154148265|ref|YP_001406534.1| tRNA pseudouridine synthase A [Campylobacter hominis ATCC BAA-381] gi|153804274|gb|ABS51281.1| tRNA pseudouridine synthase A [Campylobacter hominis ATCC BAA-381] Length = 278 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 103/279 (36%), Gaps = 41/279 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +I ++GS + G Q Q NG +++ + A+F G V A RTD GVHAL QV+ Sbjct: 6 KIRLIYSFDGSKFCGSQTQPNGKAVEDRLNSALFR-CGINEKVISASRTDKGVHALSQVS 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 W L +N + +I + + D+ F RF A RSY Y I+ Sbjct: 65 TTHCAAFWDLQNLRHFINRH--AKPSIYVRKIERADENFQVRFDAKARSYRY-ILNHDEF 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + P+ + + ++ VG+HDF+ F + S +R I + N Sbjct: 122 SPFFSNYFYFYPE-ISPFLLNLSLGIFVGKHDFSEFMKSGSASGS-VREIYKAFAYRYKN 179 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGD------GKWTSTDLE------------KALQA 224 I A FL Q+R V + ++ + L+ Sbjct: 180 FTIINFKANGFLRAQVRLMVANALKCVKILEKSFSNKKIDEISNFYKNNKNLKFNEILKN 239 Query: 225 QD-----------------RKECGPLAPPEGLYFDSVEY 246 +D + APP GLY + + Y Sbjct: 240 KDFNIEKIINDNNFPLNINKAITRIPAPPNGLYLNKIWY 278 >gi|91217701|ref|ZP_01254658.1| tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] gi|91184205|gb|EAS70591.1| tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] Length = 261 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 99/252 (39%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G Y GWQ+Q + +++ + K + F++ + V AGRTD+ V A + Sbjct: 8 YLIQLQYLGFRYHGWQKQPDVLTVEHMLHKTLNFILENQRFKVLAAGRTDAMVSANQTYI 67 Query: 63 H-FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F E + N L I L++ F+ + Y Y ++ Sbjct: 68 ELFIYEDELDLETFLEQFNKNL--PQDIRALSIEETTADFNIIQHPKIKEYFYFFCVKEK 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M++ A+ G HDF +F + I+ ++ Sbjct: 126 MHPFCAPFMVNLQEDLDIELMKLGAKLFEGEHDFYSFTFRPNPETKTEGNIERCELTEND 185 Query: 182 ---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++VV F QIR +G+L +G K + +LEK + + + Sbjct: 186 IYTANFFPNQSFVLKVVGEGFKRQQIRLMMGALIDLGRHKISLEELEKTIDGSHKIKLEH 245 Query: 233 LAPPEGLYFDSV 244 +A GL + V Sbjct: 246 IAQASGLILNKV 257 >gi|298208691|ref|YP_003716870.1| tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] gi|83848614|gb|EAP86483.1| tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] Length = 266 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G + GWQ+Q + ++++ +E+ + V G + + +GRTD+ V Sbjct: 14 YIIQLQYLGFRFHGWQKQPDVNTVERMVERTLAYVLGHKKFKLLASGRTDAKVSVNNTFV 73 Query: 63 H-FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + K N L I L++ D F+ + Y+Y + Sbjct: 74 ELFIDDKPLEVDSFFKDFNVNL--PQDIKALSIKETDANFNIIQHPKLKEYIYLFTYGEK 131 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 K L+ E M+ AA G HDF + + + I ID +++ Sbjct: 132 MHPFCAPYMVCYNKPLNIELMQEAAALFQGEHDFKNYTYKPTEDTQTIGVIDACELSENT 191 Query: 181 --------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++VV + F QIR +G+L +G G++ +K L + + + Sbjct: 192 VYTANFFPEKSYMLKVVGQGFKRHQIRLMMGALFDLGSGEFDMQFFKKTLTSTEFIKLTH 251 Query: 233 LAPPEGLYFDSV 244 +A GL SV Sbjct: 252 IAQASGLILQSV 263 >gi|195170621|ref|XP_002026110.1| GL16086 [Drosophila persimilis] gi|194110990|gb|EDW33033.1| GL16086 [Drosophila persimilis] Length = 504 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 81/297 (27%), Positives = 121/297 (40%), Gaps = 56/297 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTINKLEPQSLDTNSVQGCLELALRVFHPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + L LN L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVHVDLARRDGQPYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPDTFHCRYH 120 Query: 107 AIRRSYLYRIITRQAP----------------LALEKGRAWLI-PKSLDCENMRIAAQHL 149 AI R+YLYR + P E R + + + D E +R AA+ Sbjct: 121 AIGRTYLYRFAVARKPLFDDGKLRNKGFEAFVPVEEIDRCYFLLAPTFDIERIRNAARMF 180 Query: 150 VGRHDFTTFRSIHCQAS-------SPIRTIDHFDVN---------------SFGNLIEIR 187 +G HDF TF S+ Q S +R ID ++ + +I Sbjct: 181 IGVHDFRTFMSVSRQKSLSRDHPMFTLRKIDEINIRPGRTLALPSNATLAAETYDYWDIE 240 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYF 241 + A+SFL+ Q+R VGSL +G + + + L + AP GLY Sbjct: 241 IKAKSFLYKQVRRIVGSLLSLGSDRIDEKCIYQMLTIPSKHSWDSRVVPAPACGLYL 297 >gi|15644989|ref|NP_207159.1| tRNA pseudouridine synthase A [Helicobacter pylori 26695] gi|2499078|sp|P56144|TRUA_HELPY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2313463|gb|AAD07429.1| pseudouridylate synthase I (hisT) [Helicobacter pylori 26695] Length = 242 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIEDALNALGIKSV-VIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|261839825|gb|ACX99590.1| pseudo uridylate synthase I [Helicobacter pylori 52] Length = 242 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAKLFYHLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNAKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|198462560|ref|XP_001352470.2| GA20054 [Drosophila pseudoobscura pseudoobscura] gi|198150878|gb|EAL29967.2| GA20054 [Drosophila pseudoobscura pseudoobscura] Length = 504 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 81/297 (27%), Positives = 121/297 (40%), Gaps = 56/297 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTINKLEPQSLDTNSVQGCLELALRVFHPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + L LN L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVHVDLARRDGQPYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPDTFHCRYH 120 Query: 107 AIRRSYLYRIITRQAP----------------LALEKGRAWLI-PKSLDCENMRIAAQHL 149 AI R+YLYR + P E R + + + D E +R AA+ Sbjct: 121 AIGRTYLYRFAVARRPLFDDGKLRNKGFEAFVPVEEIDRCYFLLAPTFDIERIRNAARMF 180 Query: 150 VGRHDFTTFRSIHCQAS-------SPIRTIDHFDVN---------------SFGNLIEIR 187 +G HDF TF S+ Q S +R ID ++ + +I Sbjct: 181 IGVHDFRTFMSVSRQKSLSRDHPMFTLRKIDEINIRPGRTLALPSNATLAAETYDYWDIE 240 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYF 241 + A+SFL+ Q+R VGSL +G + + + L + AP GLY Sbjct: 241 IKAKSFLYKQVRRIVGSLLSLGSDRIDEKCIYQMLTIPSKHSWDSRVVPAPACGLYL 297 >gi|163788523|ref|ZP_02182969.1| tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] gi|159876843|gb|EDP70901.1| tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] Length = 261 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 14/256 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHAL--RQ 60 Y + I+Y G + GWQ+Q + +I I++ + + ++ GAGRTD+ V A Sbjct: 8 YLIKIQYLGYRFHGWQKQPDVKTIHLMIDRTLKFILKDVRFKTLGAGRTDAMVSANEAAL 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 K N L I L++S VDK F+ + + Y Y + Sbjct: 68 ELFIYNEPITDFEAFLKLFNHNL--PQDIRALSISEVDKAFNIIQDSKIKEYHYVFSEGE 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 I + LD E M+ A+ G H+F T+ RTI+ ++ Sbjct: 126 KNHPFCAPILTTILEPLDVELMKKGAKLFEGSHNFKTYCYRATDKGEYFRTIESSEIIDN 185 Query: 181 ---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 +V + F+ QIR G L +G G+ T +E L+ + Sbjct: 186 SLYTANFFPEQSYVFKVRGKGFMRNQIRLMFGCLIKLGRGEVTLQYIENTLKHDSTEVMD 245 Query: 232 PLAPPEGLYFDSVEYS 247 +AP GL S+++ Sbjct: 246 YIAPASGLILHSIDFE 261 >gi|32266100|ref|NP_860132.1| tRNA pseudouridine synthase A [Helicobacter hepaticus ATCC 51449] gi|42559757|sp|Q7U328|TRUA_HELHP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|32262149|gb|AAP77198.1| tRNA pseudouridine synthase [Helicobacter hepaticus ATCC 51449] Length = 248 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 109/253 (43%), Gaps = 13/253 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y +I Y+GS + G+ QK+ S+ G++++ V G + GAGRTD GVHA Sbjct: 1 MPTYKAVIAYDGSVFSGFALQKDKRLKSVLGTLKEGFARV-GIKSDIIGAGRTDKGVHAT 59 Query: 59 RQVAHFDLVREWVP-----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 QV F L LNA L I + +L IVD FH RF A+ RSY Sbjct: 60 GQVICFQSAHFLDSQVQAIESLRFLLNAKLYPH--IMVRSLHIVDDTFHPRFDALWRSYR 117 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 + + Q P K D + A Q G+H+F F+ + IRTI Sbjct: 118 FLLSPTQ-PSPFAAPYVS-YEKIGDETLFKNALQAFQGQHNFVFFKKNGSYTKNCIRTIF 175 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 ++ L + V FL Q+R VG+ + + L++ + Q + P+ Sbjct: 176 AIKHYTYKGLDIVYVRGNGFLRAQVRLMVGAALAYSRAELSFHSLQEQINGQKQHYTYPI 235 Query: 234 APPEGLYFDSVEY 246 +P GLY V Y Sbjct: 236 SP-NGLYLCEVGY 247 >gi|323455279|gb|EGB11148.1| hypothetical protein AURANDRAFT_21872 [Aureococcus anophagefferens] Length = 264 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 66/267 (24%), Positives = 102/267 (38%), Gaps = 28/267 (10%) Query: 2 IRYCMI--IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R ++ ++Y G + GWQ Q N S+ A+ AGRTD GV+A Sbjct: 1 MRSKLVFELQYLGDAFAGWQPQPNERSVHDVFAAALSNAGITDCGAVAAGRTDRGVNAAH 60 Query: 60 QVAHFDLVREWVPVILCKALN-AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV + L L + + +L+ FHA SA + Y Y + Sbjct: 61 QVVSVRSDADRGDEDLSAVLRDVSAALPGDVRVLSCRQAPASFHAITSARSKRYAYYLGF 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDV 177 + +W P LD +R A LVG DF F + + S +R++ ++ Sbjct: 121 SEDA----ARYSWQAPPGLDVGRVRRGAALLVGERDFRAFCAPGGRKCGSTVRSLRSVEI 176 Query: 178 N-----------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + L+ I FL Q R VG+L +G G + +E AL D Sbjct: 177 DDLETAELPFVGRVRGLLRIAFDGDGFLKHQCRKIVGALVRLGTGALSEAQVEAALA--D 234 Query: 227 RKECGP-------LAPPEGLYFDSVEY 246 + P AP GL+ + V+Y Sbjct: 235 PRGAHPAVSSRRFAAPARGLWLERVDY 261 >gi|323454991|gb|EGB10860.1| hypothetical protein AURANDRAFT_58785 [Aureococcus anophagefferens] Length = 305 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 106/273 (38%), Gaps = 29/273 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 RY + + Y+G+ + GWQ Q G ++QG + A+ G + GA RTD+GVHA Sbjct: 33 TRYALRVAYDGTRFKGWQVQPGGARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARG 92 Query: 60 QVAHFDLVREW----VPVILCKALNAYLKISDTISILNLSIVDK----------QFHARF 105 Q AH DL +L +N L D + +L +HA Sbjct: 93 QCAHADLPVAPLGGAPLELLEHQINRLL--PDDARVHDLRPAPAPKPWQAREGLPWHAIA 150 Query: 106 SAIRRSYLYRIITRQ-APLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRS--- 160 +A + Y YR+ R+ + L + + + +D + A VG HDF F + Sbjct: 151 NAAGKRYAYRLTARRGSADPLGRLYRGHVAYRDVDFGRLDDALSCFVGEHDFAAFANNAP 210 Query: 161 ---IHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 A S R I ++ G + L+ +R+ VG+ V DG Sbjct: 211 GLDPSGAARSTTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRD 270 Query: 217 DLEKALQAQDRKECGP--LAPPEGLYFDSVEYS 247 + L R+ P AP GL + V Y Sbjct: 271 AIPALLAPGARRADNPAKAAPACGLCLEEVYYD 303 >gi|110004220|emb|CAK98558.1| hypothetical trna pseudouridine synthase a protein [Spiroplasma citri] Length = 246 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ + IEY+G Y GW +QKN +IQG +EKA F + + + GA +TD+GVHA Q Sbjct: 1 MLYLLLSIEYDGYDYSGWVKQKNAWTIQGELEKAFFGICHQKIWTLGASKTDAGVHASDQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 L + ++ + + I+I +V + F R +A + Y+Y I Q Sbjct: 61 KVLVKLPFQSQHLVFFIKTVSK-TLPPNINIKGYQLVSENFSVR-TAKVKEYVYTI-NDQ 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNS 179 + L+ + +Q VG HDF F + + RTI+ V Sbjct: 118 EYDLFNHRYELKVNTPLNVRKLHQISQIFVGTHDFGYFAGVKPTENIVTQRTINKIWVKR 177 Query: 180 FG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLAPPE 237 IEI + +SF+ QIR ++ GK + ++L+ L+ + A P Sbjct: 178 NKAKKIEIHFMGKSFIRYQIRMLTQNILACYAGKVSLSELQAQLKHPPQGATTKYCAKPY 237 Query: 238 GLYFDSVEY 246 GL ++Y Sbjct: 238 GLCLKKIKY 246 >gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis] gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis] Length = 507 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 99/265 (37%), Gaps = 39/265 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G GY G+ Q+N ++++ ++ A+ + + H GRTD GV AL Sbjct: 61 VALRLAYLGWGYQGFASQENTKNTVEETVFNALLKTRLVESRQTSNYHRCGRTDRGVSAL 120 Query: 59 RQVAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV + LN L I +L+ + V F ARFS R+Y Y Sbjct: 121 AQVISLDLRCSAEGKPEIRYVHILNRVL--PPDIRVLSWAPVPPSFSARFSCGSRTYRYL 178 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTID 173 Q LD E M AA+ L G HDF + + RT+ Sbjct: 179 FPCAQ----------------LDVEAMDKAARLLEGTHDFRNLCKMDVANGVLNFTRTVL 222 Query: 174 HFDVNSFGN---------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ- 223 V L +++ +FL+ Q+R +G L LVG GK + + L Sbjct: 223 SARVGPVPEIPGDMGPFQLYHLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDV 282 Query: 224 -AQDRKECGPLAPPEGLYFDSVEYS 247 RK +A L + + Sbjct: 283 VKNPRKPQYNMAVEFPLVLYNCHFD 307 >gi|42559721|sp|P60353|TRUA_SPIKU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|34849384|gb|AAP58883.1| tRNA pseudouridine synthase [Spiroplasma kunkelii CR2-3x] Length = 260 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ + IEY+G Y GW +QKN +IQG +EKA F + + + GA +TD+GVHA Q Sbjct: 1 MLYLLLSIEYDGYDYSGWVKQKNARTIQGELEKAFFGICHQKIWTLGASKTDAGVHACDQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 L + P L + + + I+I V + F R + + Y+Y I Sbjct: 61 KVLVKLT--FQPRHLAFFIKTVSQTLPPNINIKGYQFVAENFSVR-TVKVKEYVYTI-ND 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVN 178 Q + L+ + + +Q VG HDF F + + + + TI+ V Sbjct: 117 QEYDLFNHRYELKVNAPLNVKKLHQISQIFVGTHDFAYFAGVKPTEDIATVHTINKIWVK 176 Query: 179 SFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPP 236 IEI + F+ QIR ++ GK + T+L+ L + A P Sbjct: 177 RNKAKKIEIHFRGKIFIRYQIRMLTQNILACYAGKVSLTELQAQLNCPPKGTTTKYCAKP 236 Query: 237 EGLYFDSVEY 246 GL ++Y Sbjct: 237 YGLCLKKIKY 246 >gi|217032587|ref|ZP_03438076.1| hypothetical protein HPB128_159g13 [Helicobacter pylori B128] gi|298735906|ref|YP_003728431.1| tRNA pseudouridine synthase A [Helicobacter pylori B8] gi|216945723|gb|EEC24348.1| hypothetical protein HPB128_159g13 [Helicobacter pylori B128] gi|298355095|emb|CBI65967.1| tRNA pseudouridine synthase A [Helicobacter pylori B8] Length = 242 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + I Y+G+ + G+ +Q N +Q IE A+ + G VV AGRTD GVHA Q Sbjct: 1 MRCFKVTIAYDGAYFLGYAKQPNKLGVQDKIESAL-NMLGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAKLFYCLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 SIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|291234813|ref|XP_002737344.1| PREDICTED: MGC80334 protein-like [Saccoglossus kowalevskii] Length = 520 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 100/231 (43%), Gaps = 31/231 (13%) Query: 1 MIRYCMIIEYNGSGYFGW-QRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHAL 58 M RY + I Y G+ + G Q ++Q IE A+ + E ++ + RTD+GVHAL Sbjct: 1 MCRYLLYISYLGTNFRGVVQTNSTSPTVQRVIEGALHTLKPQEAAKLYFSSRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKAL------NAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 AH D VR + N L I I ++ V +FHARF A R+Y Sbjct: 61 NNTAHVDFVRRNNQQPFSGEVLKTILNNKLLIAQQDIRINDVKKVPDEFHARFQAKGRTY 120 Query: 113 LYRIITR-----QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-- 165 +YRI + E R W++ LD E M+ A + +G HDF FRS + + Sbjct: 121 VYRIASNWNCALNHIPLFENHRCWMVSYRLDIEKMKQACEVFIGTHDFAAFRSKNNKNVH 180 Query: 166 SSPIRTIDHFDVNSFG---------------NLIEIRVVARSFLHTQIRSF 201 S +RTID ++ EI A+SFL+ Q R Sbjct: 181 KSTVRTIDSINIRKSHGILQHLSPCETDARIEYYEIEFKAKSFLYKQ-RCI 230 >gi|313229675|emb|CBY18490.1| unnamed protein product [Oikopleura dioica] Length = 402 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 101/267 (37%), Gaps = 37/267 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSG 54 + + Y+G+ Y G QR ++I+ I AI GRTD G Sbjct: 65 RKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAILRTKVVDDIGTADYIAGGRTDKG 124 Query: 55 VHALRQVAHFDLVREWVPVILCKALNA---------YLKISDTISILNLSIVDKQFHARF 105 VHA+ V + + + + ++ D I I + + + F ARF Sbjct: 125 VHAVNNVISLFVNSRLSEDEINENVTVGERNFVAIINRQLPDDIWITSWAPISFDFSARF 184 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 S R Y Y + LD E M+ AA +L+G HDF F + Sbjct: 185 SCKSRHYNYIFDSS----------------GLDVELMKEAASYLIGEHDFRNFSQAQLER 228 Query: 166 SSPIRTIDHFDVNSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + +R D+ N + + A FL+ QIR + L LVG+ ST +++ L Sbjct: 229 QNTVRVCFAADIKQVPNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELL 288 Query: 223 QAQD--RKECGPLAPPEGLYFDSVEYS 247 + R+ A P+GL EY Sbjct: 289 DVEKYPRRPSYKYANPDGLVLIDCEYE 315 >gi|67484392|ref|XP_657416.1| pseudouridine synthase [Entamoeba histolytica HM-1:IMSS] gi|56474668|gb|EAL52030.1| pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS] Length = 366 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 97/274 (35%), Gaps = 49/274 (17%) Query: 4 YCMIIEYNGSGYFGWQRQK-------------NGSSIQGSIEKAIFLV----TGEIVVVH 46 + + Y G Y G Q N +I+ + KA+F + + Sbjct: 38 IAIRLTYIGIDYNGIQCTLLNDVTDATFDSVINDGTIEYQLFKALFKTRLIQNTKDCKYN 97 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLS 95 GRTD GV A QV + + C+ LN L I L Sbjct: 98 RCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLL--PTDIRCLGWC 155 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V F++RFS R+Y Y + P S D M+ AAQ +G HDF Sbjct: 156 GVPDDFNSRFSCQSRTYHY----------------YFDPSSYDVPKMKEAAQLFLGEHDF 199 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 T F S +R ++ F+V L V +F+ Q+R VG+L +G G Sbjct: 200 TNFCKKDPAVSHCVRRVNSFEVEETDGLSRFVVCGTAFVWHQVRYMVGALFAIGQG-ANP 258 Query: 216 TDLEKALQAQDRKECG--PLAPPEGLYFDSVEYS 247 +++ L + + AP L +Y Sbjct: 259 ESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYD 292 >gi|300782641|ref|YP_003762932.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei U32] gi|299792155|gb|ADJ42530.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei U32] Length = 238 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 98/221 (44%), Gaps = 18/221 (8%) Query: 42 IVVVHGAGRTDSGVHALRQVAHFDLVREWV-------------PVILCKALNAYLKISDT 88 V AGRTD+GVHA QV H D+V P + A + Sbjct: 2 PKSVVVAGRTDAGVHATGQVVHVDVVPLAPGSAGRVPVFAEGIPDLTRMAGRWNRLLPGD 61 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQ 147 + +L I + F ARFSA+RR Y YR+ L + + L + M AA Sbjct: 62 VRVLGARIAPEGFDARFSAVRRHYRYRVSDAPWGVDPLRRHDTLAWNRPLSTDAMNAAAA 121 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLK 206 L+G HDF + + + IR + + +L+E+RV A +F H+ +RS VG L Sbjct: 122 ELLGLHDFAAYCKQR-ETGTTIRELQRLEWTRVDEHLLEVRVSADAFCHSMVRSLVGVLL 180 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 LVGDG+ T K L++ R +AP GL V+Y Sbjct: 181 LVGDGRRTDAWPAKVLESGIRDSA--VAPAHGLTLLGVDYP 219 >gi|217034467|ref|ZP_03439879.1| hypothetical protein HP9810_890g12 [Helicobacter pylori 98-10] gi|216943069|gb|EEC22546.1| hypothetical protein HP9810_890g12 [Helicobacter pylori 98-10] Length = 242 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 105/250 (42%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N S+Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLSVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFCAQKHWNAAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGAMTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + GK T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLGKITLAEIQAQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|313125232|ref|YP_004035496.1| pseudouridylate synthase i [Halogeometricum borinquense DSM 11551] gi|312291597|gb|ADQ66057.1| pseudouridylate synthase I [Halogeometricum borinquense DSM 11551] Length = 272 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 35/254 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSGV 55 +R I Y+G ++G+QRQ + +++ SI A+ + + AGRTD+GV Sbjct: 1 MR-AFRIAYDGRPFYGFQRQPSVPTVEDSIFDALRSLGVLDEDARKPTGYAAAGRTDAGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL Q FD P +A+NA L +++ + V ++FHA A RR+Y+Y Sbjct: 60 SALAQTVAFDCPEWCTP----RAMNAEL--PESVRAWAAADVGERFHATHDAARRAYVYD 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + +A D + AA L G HD F ++ + +R + Sbjct: 114 LYAPEA----------------DESKAQAAADALTGEHD---FHNLTPDDTGTVRDVT-V 153 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPL 233 V + G + + V A F + +R + V G D+E L + E P Sbjct: 154 SVEADGEFLVLSVAAGGFPYNLVRRLASIVHSVATGDRPLADIETVLGPETVPGPEGVPT 213 Query: 234 APPEGLYFDSVEYS 247 AP E L + V Y Sbjct: 214 APAEPLVLERVVYP 227 >gi|109947020|ref|YP_664248.1| tRNA pseudouridine synthase A [Helicobacter acinonychis str. Sheeba] gi|122973397|sp|Q17YM7|TRUA_HELAH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109714241|emb|CAJ99249.1| pseudouridylate synthase I [Helicobacter acinonychis str. Sheeba] Length = 242 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q + +Q IE A+ L+ + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPDKLGVQDKIESALNLLGIKSV-VIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAQKHWSADKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKSL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 L A SLD ++ A + +G+HDF+ F+ A++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--SLNTALKQFIGKHDFSMFKKEGGAATNPKRIIFNAFAYKA 173 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 SIMGHECVVFKIIGDAFLRSSVRLIMQACVQYSLEKITLAEIKTQINNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVHY 242 >gi|312892438|ref|ZP_07751932.1| tRNA pseudouridine synthase A [Mucilaginibacter paludis DSM 18603] gi|311295072|gb|EFQ72247.1| tRNA pseudouridine synthase A [Mucilaginibacter paludis DSM 18603] Length = 358 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 4/172 (2%) Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK 135 ++LNA L I++ + V HARF A RSY Y + + +W + Sbjct: 189 TRSLNALL--PHDIAVKRIIPVHADAHARFDATLRSYEYHVHFEK--DPFLNNLSWQLRD 244 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 D M AAQ ++ DF+ F + Q + I + S G+ + + A FL Sbjct: 245 RPDVGLMNQAAQIVMEYTDFSCFSKSNTQVKTNNCKISRAEWVSNGDKLIFHISADRFLR 304 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +R+ VG+L +VG G ++ + +++++R G P GLY V Y Sbjct: 305 NMVRAIVGTLMMVGKGDIKPEEVRRIIESKNRSNAGVSVPACGLYLTEVRYP 356 Score = 98.4 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q N S+Q + KA+ + V G GRTD+GVHA + Sbjct: 5 QRYFIELAYDGTNYHGWQIQHNAISVQQVLNKALSTLLRMPVETLGCGRTDTGVHAKQLY 64 Query: 62 AHFDLVREWVP 72 AHFD+ R+ P Sbjct: 65 AHFDIGRQEQP 75 >gi|224102643|ref|XP_002312761.1| predicted protein [Populus trichocarpa] gi|222852581|gb|EEE90128.1| predicted protein [Populus trichocarpa] Length = 232 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 8/176 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ Y GWQ Q+ +IQ +EKA+ T + + + GA RTD GVHA Sbjct: 58 KWRLLISYDGTHYKGWQFQQTPPTIQCILEKALTRATKLERKDLHLVGASRTDGGVHAWG 117 Query: 60 QVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + +S V +FHARFSA ++Y Y+I Sbjct: 118 QVAHFVTPFNYDSLDSIHAALNGLL--PPDIRVREISAVVPEFHARFSAKGKTYHYKIFN 175 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTI 172 ++ A+ + L+ MR AA H +G DF+ F S + +P++TI Sbjct: 176 DTVMDPFQRLYAYHVTHKLNAAVMREAANHFIGTRDFSAFVNSSRNDGVPNPVKTI 231 >gi|167377399|ref|XP_001734387.1| tRNA pseudouridine synthase [Entamoeba dispar SAW760] gi|165904128|gb|EDR29463.1| tRNA pseudouridine synthase, putative [Entamoeba dispar SAW760] Length = 366 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 96/274 (35%), Gaps = 49/274 (17%) Query: 4 YCMIIEYNGSGYFGWQ-------------RQKNGSSIQGSIEKAIFLV----TGEIVVVH 46 + + Y G Y G Q N +I+ + KA+F + + Sbjct: 38 IAIHLTYIGIDYNGIQCTLLNDVTDSTFDSVVNDGTIEYQLFKALFKTRLIQNTKDCKYN 97 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLS 95 GRTD GV A QV + + C+ LN L I L Sbjct: 98 RCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLL--PIDIRCLGWC 155 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V F++RFS R+Y Y + P S D M+ AAQ +G HDF Sbjct: 156 GVPDDFNSRFSCQSRTYHY----------------YFDPSSYDVPKMKEAAQLFLGEHDF 199 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 T F IR ++ F+V L V +F+ Q+R VG+L +G G Sbjct: 200 TNFCKKDPAVPHCIRRVNSFEVEEINGLSRFVVCGTAFVWHQVRYMVGALFAIGQG-ANP 258 Query: 216 TDLEKALQAQDRKECG--PLAPPEGLYFDSVEYS 247 +++ L + + AP L +Y Sbjct: 259 ESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYD 292 >gi|146093784|ref|XP_001467003.1| pseudouridine synthase A-like protein [Leishmania infantum JPCM5] gi|134071367|emb|CAM70054.1| putative pseudouridine synthase A-like protein [Leishmania infantum JPCM5] Length = 499 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 36/264 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ + GRTD GV Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 ALRQ--------VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL D + P+ C LN L TI I+ ++VD F ARFS + Sbjct: 120 ALGNALSLTARASCTADAEPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDTFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 R+Y Y + + L+ E M+ AA +G H+F F + S+ Sbjct: 178 HRTYRY----------------YFFHRGLNLEAMQEAAAFFLGTHNFRNFCKMDVVNVSN 221 Query: 168 PIRTIDHFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RT+ ++ L E+ + A SFL+ QIR + L LVG G + ++ L+ Sbjct: 222 FVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTLLE 281 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 DRK PLA L + Sbjct: 282 RGDRKPTYPLADGTPLVLWDCGFD 305 >gi|317014476|gb|ADU81912.1| tRNA pseudouridine synthase A [Helicobacter pylori Gambia94/24] Length = 242 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESAL-NALGIKSGVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAKLFHYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + +G+HDF+ F+ A++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDL--LNTALKQFIGKHDFSMFKKEGGAATNPNRIIFNALAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIMGHECVAFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|15612084|ref|NP_223736.1| tRNA pseudouridine synthase A [Helicobacter pylori J99] gi|8134768|sp|Q9ZKC0|TRUA_HELPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4155610|gb|AAD06601.1| PSEUDOURIDYLATE SYNTHASE I [Helicobacter pylori J99] Length = 242 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKAIVAYDGAYFLGYAKQPNKLGVQDKIESAL-NALGIKSGVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 ALSFHAPKHWNAAKLFHYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + IA + +G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNIALKQFIGKHDFSMFKKEGGATTNPNRIIFNALAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica] Length = 402 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 37/267 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSG 54 + + Y+G+ Y G QR ++I+ I A+ GRTD G Sbjct: 65 RKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAMLRTKVVDDIGTADYIAGGRTDKG 124 Query: 55 VHALRQVAHFDLVREWVPVILCKALNA---------YLKISDTISILNLSIVDKQFHARF 105 VHA+ V + + + + ++ D I I + + + F ARF Sbjct: 125 VHAVNNVISLFVNSRLSEDEINENVTVGERNFVAIINRQLPDDIWITSWAQISSDFSARF 184 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 + R Y Y + LD E M+ AA +L+G HDF F + Sbjct: 185 NCKSRHYNYIFDSS----------------GLDVELMKEAASYLIGEHDFRNFSQAQLER 228 Query: 166 SSPIRTIDHFDVNSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + +R D+ N + + A FL+ QIR + L LVG+ ST +++ L Sbjct: 229 QNTVRVCFAADIKQVPNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELL 288 Query: 223 QAQD--RKECGPLAPPEGLYFDSVEYS 247 + R+ A P+GL EY Sbjct: 289 DVEKYPRRPSYKYANPDGLVLIDCEYE 315 >gi|221230534|ref|YP_002503950.1| putative pseudouridylate synthase [Mycobacterium leprae Br4923] gi|4539110|emb|CAB39831.1| putative tRNA pseudouridine synthase A [Mycobacterium leprae] gi|13093610|emb|CAC30910.1| probable pseudouridylate synthase [Mycobacterium leprae] gi|219933641|emb|CAR72052.1| probable pseudouridylate synthase [Mycobacterium leprae Br4923] Length = 249 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 14/230 (6%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV------------REWVPVILCKA 78 +++A V V + AGRTD+GVHA QVAH D+ P L Sbjct: 2 LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFLPLL 61 Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSL 137 + + +L+++ F ARFSA+RR Y YR+ T + + P+ L Sbjct: 62 RRLSRLLPVDVRVLDIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 D ++M A++ L+G DF F H ++ IR + + + G LI + A +F + Sbjct: 122 DLDSMSAASRDLLGLRDFAVFCR-HRHGATTIRELQRLEWSREGYLITAHITADAFCWSM 180 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +RS +G+L VGD + T + L R AP GL F V+Y Sbjct: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYP 230 >gi|215737309|dbj|BAG96238.1| unnamed protein product [Oryza sativa Japonica Group] Length = 223 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 8/196 (4%) Query: 58 LRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 + VAHF + A+N L I + +S +FHAR S + Y Y+I Sbjct: 1 MHGVAHFTTPFSYHCLDSMHSAINGLL--PHEIRVREISAAKPEFHARTSTRSKIYHYKI 58 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDH 174 A+ L+ + MR AA+H VG HDFT+F + + + SPI+ I Sbjct: 59 YNGPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMR 118 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL- 233 FDV G ++++ + FL+ Q+R+ V L VG + K + A+DRKE + Sbjct: 119 FDVIEMGAILQLEIEGTGFLYRQVRNMVALLLQVGREALPPDIVAKIIAARDRKELAKVA 178 Query: 234 --APPEGLYFDSVEYS 247 APP GLY SV Y Sbjct: 179 LSAPPHGLYLMSVNYD 194 >gi|74191686|dbj|BAE30412.1| unnamed protein product [Mus musculus] Length = 280 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 115/276 (41%), Gaps = 53/276 (19%) Query: 21 QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR-----EWVPVIL 75 Q Q E A L + + V + RTD+GVHAL AH D+ R + P ++ Sbjct: 3 QPPVRFPQ---EAAKRLNSVDPVRFTISSRTDAGVHALSNAAHLDIQRRPGQSPFSPEVV 59 Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL----ALEKGRAW 131 KALN +LK I +L V FHAR +A R+Y YR+ T + E+ W Sbjct: 60 AKALNTHLKHP-AIRVLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQNVCW 118 Query: 132 LIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--------- 181 + + LD M+ AAQHL+G HDF+ F+S ++ +RT+ V+ Sbjct: 119 ALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEG 178 Query: 182 ----NLIEIRVVARSFLHT------------------------QIRSFVGSLKLVGDGKW 213 + ++SFL+ Q+R L VG G Sbjct: 179 SRRLQFWTLEFESQSFLYRQVGCLNPHRMGSGRHTCDNLSSLLQVRRMTAVLVAVGLGIL 238 Query: 214 TSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEYS 247 T ++ L++QD K +AP GL+ SV Y Sbjct: 239 APTQVKVILESQDPLGKYQARVAPARGLFLKSVLYD 274 >gi|322501100|emb|CBZ36178.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 499 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 36/264 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ + GRTD GV Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 ALRQ--------VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL D + P+ C LN L TI I+ ++VD F ARFS + Sbjct: 120 ALGNALSLTARASCTADAEPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDAFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 R+Y Y + + L+ E M+ AA +G H+F F + S+ Sbjct: 178 HRTYRY----------------YFFHRGLNLEAMQEAAAFFLGTHNFRNFCKMDVVNVSN 221 Query: 168 PIRTIDHFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RT+ ++ L E+ + A SFL+ QIR + L LVG G + ++ L+ Sbjct: 222 FVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTLLE 281 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 DRK PLA L + Sbjct: 282 RGDRKPTYPLADGTPLVLWDCGFD 305 >gi|210135252|ref|YP_002301691.1| tRNA pseudouridine synthase A [Helicobacter pylori P12] gi|238057731|sp|B6JMT3|TRUA_HELP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|210133220|gb|ACJ08211.1| pseudouridylate synthase I [Helicobacter pylori P12] Length = 242 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESAL-NALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWSADKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + + Sbjct: 116 KTPFLAPYIACGDYGSLDL--LNTALKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQMQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|317182345|dbj|BAJ60129.1| tRNA pseudouridine synthase A [Helicobacter pylori F57] Length = 242 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLVPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGAITNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FITGHECVVFKIIGDAFLRSSVRLIVQACVKYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|261838425|gb|ACX98191.1| pseudouridylate synthase I [Helicobacter pylori 51] Length = 242 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAKLFYHLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|15669871|ref|NP_248685.1| tRNA pseudouridine synthase A [Methanocaldococcus jannaschii DSM 2661] gi|3915177|sp|Q59069|TRUA_METJA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1500579|gb|AAB99697.1| pseudouridylate synthase I (truA) [Methanocaldococcus jannaschii DSM 2661] Length = 259 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 35/250 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G Y +Q+Q + ++ + A+ + V++ GRTD GV AL Sbjct: 2 YILKIAYDG-RYS-FQQQPHKQTVCDILLDALEETGFLAKKKVIYSGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L + + +NA LK I +L +D+ ++ R Y Y + Sbjct: 60 VVVELKK----EPILSYINAKLK-DKGIWVLGYREIDEIPKVKY----RHYRYILPN--- 107 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSF 180 G D + ++ A+ ++G H F + SPIRTI ++ Sbjct: 108 -----IGY--------DVDAIKEGAKKMIGTHSFHNLSKRDRTKEKSPIRTIYDIKISEN 154 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + ++ SFL +R VG+L LVG GK ++K L ++ +E P PPEGL Sbjct: 155 EFYLTVDIIGESFLWNMVRKIVGALDLVGRGKKPVEWIDKLLD-ENHREGVPTFPPEGLI 213 Query: 241 F----DSVEY 246 +EY Sbjct: 214 LVEAKVDIEY 223 >gi|308184830|ref|YP_003928963.1| tRNA pseudouridine synthase A [Helicobacter pylori SJM180] gi|308060750|gb|ADO02646.1| tRNA pseudouridine synthase A [Helicobacter pylori SJM180] Length = 242 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKAIVAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNADKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKSL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDL--LNTALKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 SIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|289581033|ref|YP_003479499.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Natrialba magadii ATCC 43099] gi|289530586|gb|ADD04937.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Natrialba magadii ATCC 43099] Length = 293 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 106/261 (40%), Gaps = 27/261 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSGV 55 +R + Y+G+GY+G+QRQ + +++ ++ A+ + + AGRTD+GV Sbjct: 1 MR-AFRLAYDGTGYYGFQRQPDVPTVEDAMFDALRALDVLAPDADKPAGYAAAGRTDAGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL Q F+ P +A N L I + +FHA A R Y Y Sbjct: 60 SALAQTVAFEAPDWLTP----RAFNGEL--PADIRAWAAADAPDEFHATHHAREREYTYY 113 Query: 116 II----TRQAPLA----LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 + AP A + + ++D + + A L G HD F ++ + Sbjct: 114 LYAPPANDDAPPASDTDEDHAGTPVTAHTVDDDRFQAACDALSGPHD---FHNLTPDDHN 170 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 R+ + G+ + V A F +R V + VG G+ +E+AL++ Sbjct: 171 TERS-PVLESTRDGHFRILTVTAGGFCRELVRRLVSLARDVGTGEANLQTIERALESDPL 229 Query: 228 --KECGPLAPPEGLYFDSVEY 246 E APPE L VEY Sbjct: 230 PGHEGIAPAPPEPLVLTDVEY 250 >gi|208434988|ref|YP_002266654.1| pseudo uridylate synthase I [Helicobacter pylori G27] gi|238057732|sp|B5Z889|TRUA_HELPG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|208432917|gb|ACI27788.1| pseudo uridylate synthase I [Helicobacter pylori G27] Length = 242 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 TLSFHAPKHWNAAKLFYCLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSLFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|307637758|gb|ADN80208.1| tRNA pseudo uridine synthase A [Helicobacter pylori 908] gi|325996359|gb|ADZ51764.1| tRNA pseudouridine synthase A [Helicobacter pylori 2018] gi|325997947|gb|ADZ50155.1| tRNA pseudouridine synthase A [Helicobacter pylori 2017] Length = 242 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKAIVAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 ALSFHAPKHWNADKLFHYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + +G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDL--LNTALKQFIGKHDFSMFKKEGGATTNPNRIIFNALAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K +++ + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIKACVQYSLEKIALAEIQAQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|219129673|ref|XP_002185007.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403502|gb|EEC43454.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 373 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 87/359 (24%), Positives = 129/359 (35%), Gaps = 116/359 (32%) Query: 3 RYCMIIEYNGSGYFG--WQRQ------KNG------SSIQGSIEKAIFLVTGEIV--VVH 46 RY + ++Y G + G WQR NG S++G + +A+ + G + Sbjct: 9 RYAVSLQYRGPPFLGFSWQRTQEDCILPNGTDLRGRQSVEGRLREALDKLVGRDGYDKIQ 68 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPV----------ILCKALNAYLKIS---------- 86 + RTD GVHAL+ H D+ + L + L Y+ Sbjct: 69 VSSRTDRGVHALKNTCHIDVRTSFPDESGNVLTPYSRTLFEGLQYYIAKQASTAVEQGGK 128 Query: 87 ------------------------------DTISILNLSIVDK----------------- 99 + +LN+ Sbjct: 129 GLEVSKRRSIDLKDVLSGKERFPAVQQFQIKDMRLLNIREAPHFMDNPLYDVQSTIQPNK 188 Query: 100 -QFHARFSAIRRSYLYRII----TRQAPLALEKGRAWLIPK--SLDCENMRIAAQHLVGR 152 ++ ARFSA +R+YLYRI+ + E R+W I LD E M+ AA++L G Sbjct: 189 VRWDARFSATQRTYLYRILHMCNDTDWAVPFEWNRSWRIRNSIPLDLEAMQRAAKYLTGT 248 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI--------------------------EI 186 HDFT+FR+ C SP+ T++ V S I I Sbjct: 249 HDFTSFRASGCSRYSPVVTLNQICVQSQPYGIAGLSGTFAKECALFGIPTTIDPLCLTTI 308 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 SFL+ Q+R+ VG L VG G D L A+DR + AP GL+ V+ Sbjct: 309 SFQGNSFLYRQVRNMVGYLVAVGKGWINCEDTVAVLNARDRTKAQSTAPAHGLFLVDVK 367 >gi|108563457|ref|YP_627773.1| tRNA pseudouridine synthase A [Helicobacter pylori HPAG1] gi|122980474|sp|Q1CSH3|TRUA_HELPH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|107837230|gb|ABF85099.1| pseudouridylate synthase I [Helicobacter pylori HPAG1] Length = 242 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 105/250 (42%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIENALNTLGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNVAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 L A SLD + A + G+HDF+ F+ ++P R I + + Sbjct: 116 KTPFLAPYIACGDYGSLDL--LNSALKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTA 173 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIQTCVQYSLEKITLAEIEMQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 233 DGLYLHRVYY 242 >gi|254756838|ref|ZP_05208866.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] Length = 145 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 69/144 (47%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 R+ R+ Y YR++ + + + P L+ ++R A + +G HDFT+F S Sbjct: 1 RYGVERKEYRYRVLVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKT 60 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RTI ++ + + R V FL+ +R VG+L VG GK + + L Sbjct: 61 DKKDKVRTIYEIELIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILA 120 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 Q+R+ G +AP GLY V Y+ Sbjct: 121 KQNRQFAGKMAPGHGLYLWQVNYN 144 >gi|261328820|emb|CBH11798.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei gambiense DAL972] Length = 458 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 102/264 (38%), Gaps = 36/264 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G RQ +++ + A+ + GRTD GV Sbjct: 55 RKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVS 114 Query: 57 ALRQVAHFDL--------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL V F + P+ C+ LN L TI I+ S V+ F ARFS Sbjct: 115 ALGNVVSFTSRASSWATDEHQQPPLDYCEKLNNVL--PPTIRIVGWSYVNADFDARFSCT 172 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 R+Y Y + + L+ E MR A +L G H+F F ++ Sbjct: 173 GRTYRY----------------YFCNRGLNLEAMRKAVGYLKGVHNFRNFCKTDVVNVNN 216 Query: 168 PIRTIDHFDV---NSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 R + H D+ +L+ + A SFL+ QIR + L LVG +++ L Sbjct: 217 YERHVRHADIVGSEMLPDLVSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLD 276 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 DRK PLA L + Sbjct: 277 CGDRKPVYPLADATPLVLWECHFE 300 >gi|167948002|ref|ZP_02535076.1| tRNA pseudouridine synthase A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 201 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 2/151 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+GSG+ GWQ+Q + S+Q +E A+ V + V VH AGRTD+GVH QV Sbjct: 19 MKIALGVEYDGSGFNGWQKQSHARSVQEDLEAALSRVADQPVRVHCAGRTDTGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E P N L + +S+ V FHARFSA R Y Y I+ R Sbjct: 79 VHFETTAERPPRAWVLGSNVNL--PNDVSVSWARQVADDFHARFSATGRHYRYLILNRGT 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 AL + RA LD M+ A + G Sbjct: 137 RSALWRNRATWHHHPLDEHRMQPAGTGIGGH 167 >gi|296471772|gb|DAA13887.1| tRNA pseudouridine synthase 3 [Bos taurus] Length = 481 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + H GRTD GV A Sbjct: 65 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL + N + I +L + V+ F Sbjct: 125 GQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + +LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRANLDIVTMNYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI V G L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEVIDELLN 304 >gi|255086349|ref|XP_002509141.1| predicted protein [Micromonas sp. RCC299] gi|226524419|gb|ACO70399.1| predicted protein [Micromonas sp. RCC299] Length = 452 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 108/236 (45%), Gaps = 59/236 (25%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT------------------GEIV 43 RY + ++Y+G+ + G+QRQ N ++QG +E A+ + Sbjct: 63 PRYLLRVQYDGTNFHGFQRQANARTVQGCVEDALDAFAGGGGGGGGGGGGDGADTMRSSI 122 Query: 44 VVHGAGRTDSGVHALRQVAHFDLV------------REWVPVILCKALNAYLKI--SDTI 89 V HG+ RTD+GVHAL H DL P ++ ALN +LK + + Sbjct: 123 VTHGSSRTDAGVHALDNTMHVDLPPRVSRREPTRALPPHEPHVVASALNHFLKKRGAPDV 182 Query: 90 SILNLSIVDKQ-FHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLI-------------- 133 ++ VD FHARFSA R+Y YR+ P E+GR W + Sbjct: 183 AVTRCIRVDPNAFHARFSATGRTYHYRMHVSPTPPSLFERGRVWHVCSGAGDRDAAGGGA 242 Query: 134 -----------PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 LD + MR+AA HLVG HDF+TFR+ CQASSP+RT+ V+ Sbjct: 243 DGCHENAGHDGRWGLDVDAMRVAAAHLVGTHDFSTFRASGCQASSPVRTLWDVRVD 298 Score = 81.8 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + V SFL+ Q+R V +L+ VG G+ + L A+ + +AP GLY Sbjct: 371 VVVTAVGPSFLYHQVRLMVATLRAVGAGEIDPASVPALLAARTPRAVPAMAPAHGLYLGR 430 Query: 244 VEYS 247 V Y Sbjct: 431 VHYD 434 >gi|77735971|ref|NP_001029684.1| tRNA pseudouridine synthase 3 [Bos taurus] gi|119391067|sp|Q3SX07|PUS3_BOVIN RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus] Length = 481 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + H GRTD GV A Sbjct: 65 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL + N + I +L + V+ F Sbjct: 125 GQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + +LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRANLDIVTMNYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI V G L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEVIDELLN 304 >gi|308183197|ref|YP_003927324.1| tRNA pseudouridine synthase A [Helicobacter pylori PeCan4] gi|308065382|gb|ADO07274.1| tRNA pseudouridine synthase A [Helicobacter pylori PeCan4] Length = 242 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIEDALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKRFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +V+ +FL + +R + + K T +++ + P+ Sbjct: 174 FIIGHECVVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|157872401|ref|XP_001684749.1| pseudouridine synthase A-like protein [Leishmania major strain Friedlin] gi|68127819|emb|CAJ06260.1| putative pseudouridine synthase A-like protein [Leishmania major strain Friedlin] Length = 498 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 108/264 (40%), Gaps = 36/264 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ + GRTD GV Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 ALRQ--------VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL D + P+ C LN L TI I+ ++VD F ARFS + Sbjct: 120 ALGNAFSLTARASCTGDAEPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDAFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 R+Y Y + + L+ M+ AA +G H+F F + S+ Sbjct: 178 HRTYRY----------------YFFHRGLNLAAMQEAAAFFLGTHNFRNFCKMDVVNVSN 221 Query: 168 PIRTIDHFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RT+ ++ L E+ + A SFL+ QIR + L LVG G + ++ L+ Sbjct: 222 FVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTLLE 281 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 DRK PLA L + Sbjct: 282 LGDRKPTYPLADGTPLILWDCGFD 305 >gi|315586982|gb|ADU41363.1| tRNA-pseudouridine synthase I [Helicobacter pylori 35A] Length = 242 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGVYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L + + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAKLFYYLAPKLAPH--VVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +V+ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAEIQTQIHNTKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|20094324|ref|NP_614171.1| TruD family pseudouridine synthase [Methanopyrus kandleri AV19] gi|30913397|sp|Q8TWZ3|TRUA_METKA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19887376|gb|AAM02101.1| Pseudouridylate synthase of the TruA family [Methanopyrus kandleri AV19] Length = 256 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 28/248 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+GS Y G+Q Q + +I+G++ KA+ + E+V A RTD+G HA QV Sbjct: 1 MRVALRVAYDGSRYHGFQYQPDVPTIEGALRKALSELGLELVGY--ASRTDAGAHARYQV 58 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + +NA L I ++ + V ++F R A+R+ Y Y + Sbjct: 59 VVVEGD---PELAQPDPINARL--PKDIRVIAKTEVHEEFDPRRDALRKEYRYFLG---- 109 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSF 180 L + E AA+ L G+HDF+ FR +PI T++ + V Sbjct: 110 --PLNRP-----------EAAARAARKLEGKHDFSAFRRE--DGRNPIITVERCELVEIT 154 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGL 239 N +RVVA FL +R G + VG G D E L + + + P EGL Sbjct: 155 PNAYVLRVVAPRFLWEMVRRIAGFVWEVGHGLREEGDAEALLSGKFEPSKKPRCLPAEGL 214 Query: 240 YFDSVEYS 247 +EY Sbjct: 215 ILWHIEYD 222 >gi|308062368|gb|ADO04256.1| tRNA pseudouridine synthase A [Helicobacter pylori Cuz20] Length = 242 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 101/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESAL-NALGIKSTVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L + + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYTQKHWNAAKLFYHLAPKLAPH--VVLKRLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGAITNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|317178604|dbj|BAJ56392.1| tRNA pseudouridine synthase A [Helicobacter pylori F30] Length = 242 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFCAPKHWNAAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQVQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|332673893|gb|AEE70710.1| tRNA pseudouridine synthase A [Helicobacter pylori 83] Length = 242 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHADNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAKLFYHLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFDAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|317177844|dbj|BAJ55633.1| tRNA pseudouridine synthase A [Helicobacter pylori F16] Length = 242 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G +V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESAL-NALGIKSIVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAKLFYHLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLVPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|72390247|ref|XP_845418.1| pseudouridine synthase A-like protein [Trypanosoma brucei TREU927] gi|62360588|gb|AAX81000.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei] gi|70801953|gb|AAZ11859.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 428 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 103/264 (39%), Gaps = 36/264 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G RQ +++ + A+ + GRTD GV Sbjct: 25 RKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVS 84 Query: 57 ALRQVAHFDL--------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL V F ++ P+ C+ LN L TI I+ S V+ F ARFS Sbjct: 85 ALGNVVSFTSRASSWATDEQQQPPLDYCEKLNNVL--PPTIRIVGWSYVNADFDARFSCT 142 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 R+Y Y + + L+ E MR A +L G H+F F ++ Sbjct: 143 GRTYRY----------------YFCNRGLNLEAMRKAVGYLKGVHNFRNFCKTDVVNVNN 186 Query: 168 PIRTIDHFDVNSFG---NLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 R + H D+ +L+ + A SFL+ QIR + L LVG +++ L Sbjct: 187 YERHVRHADIVGSDMLPDLVSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLD 246 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 DRK PLA L + Sbjct: 247 CGDRKPVYPLADATPLVLWECHFE 270 >gi|255322348|ref|ZP_05363494.1| tRNA pseudouridine synthase A [Campylobacter showae RM3277] gi|255300721|gb|EET79992.1| tRNA pseudouridine synthase A [Campylobacter showae RM3277] Length = 317 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 4/207 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q Q + + ++ ++ A+ V G + + RTD GVHA QV Sbjct: 1 MRLKLVFSYDGSKFQGSQTQPHENGVEDALGVALAHV-GIFSKIISSSRTDKGVHANNQV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + + ++L I + +S V FH R+ A R+Y Y I + Sbjct: 60 ACVECGEHFKDFVRLRSL-VNRHAHPAIHVKFISRVKDGFHPRYDATARAYRYVINHGEF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 IPK D VG HDF+ F + SP+R + G Sbjct: 119 -SPFLSPYETFIPK-FDLNLANELLALFVGEHDFSAFMKLGSDVKSPVRRVSKAFCYERG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLV 208 I A FL Q+R V S+ Sbjct: 177 ERTIIVFKANGFLRAQVRLMVASVLKA 203 >gi|311264306|ref|XP_003130101.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa] Length = 479 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 95/256 (37%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + H GRTD GV A Sbjct: 64 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + +N + I +L + V+ F Sbjct: 124 GQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 184 SARFSCLERTYRY----------------FFPHADLDIVTMNYAAQKYVGTHDFRNLCKM 227 Query: 162 H--CQASSPIRTI------------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 ++ RTI + L + VV ++FL+ Q+R + L L Sbjct: 228 DVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFL 287 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 288 IGQGMEKPEVIDELLN 303 >gi|308063876|gb|ADO05763.1| tRNA pseudouridine synthase A [Helicobacter pylori Sat464] Length = 242 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 101/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESAL-NALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L + + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAKLFYYLAPKLAPH--VVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|317012865|gb|ADU83473.1| tRNA pseudouridine synthase A [Helicobacter pylori Lithuania75] Length = 242 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 100/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE + G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIEGTL-NALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAKLFHYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T ++E + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|188527873|ref|YP_001910560.1| tRNA pseudouridine synthase A [Helicobacter pylori Shi470] gi|238691941|sp|B2UUJ8|TRUA_HELPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188144113|gb|ACD48530.1| tRNA pseudouridine synthase A [Helicobacter pylori Shi470] Length = 242 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L + + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAKLFYYLAPKLAPH--VVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|317011288|gb|ADU85035.1| tRNA pseudouridine synthase A [Helicobacter pylori SouthAfrica7] Length = 242 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 101/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFSGYAKQPNKLGVQDKIESAL-NLLGIKSAVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNADRLFSYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKSL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + +G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDFGSLDL--LNTALKQFIGKHDFSMFKKEGGALTNPKRIIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T + + P+ Sbjct: 174 SIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAAITAQIHNIQAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|256810921|ref|YP_003128290.1| tRNA pseudouridine synthase A [Methanocaldococcus fervens AG86] gi|256794121|gb|ACV24790.1| tRNA pseudouridine synthase A [Methanocaldococcus fervens AG86] Length = 259 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 35/250 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G Y +Q+Q + ++ + + + +++ GRTD GV AL Sbjct: 2 YILKIAYDG-RYS-FQQQPHKQTVCDILLDTLENTDFLAKKKIIYSGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L + + +NA LK S I +L +D+ ++ R Y Y + Sbjct: 60 VVLELKK----EPILSYINAKLK-SKGIWVLGYREIDEIPKVKY----RYYRYILPNINY 110 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSF 180 + + ++ A+ ++G H F + SPIRTI ++ Sbjct: 111 ----------------NVDAIKEGAKKMIGTHSFHNLSKRDRTKEKSPIRTIYDIKISEN 154 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I ++ SFL +R VG+L L+G GK ++K L ++ +E P PP+GL Sbjct: 155 EFYLTIDIIGESFLWNMVRKIVGALDLIGRGKKPVEWIDKLLD-ENYREGVPTFPPDGLI 213 Query: 241 F----DSVEY 246 V+Y Sbjct: 214 LVEAKVDVDY 223 >gi|261350284|ref|ZP_05975701.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374] gi|288861068|gb|EFC93366.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374] Length = 288 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 99/269 (36%), Gaps = 47/269 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + + + + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +L D I IL + V F R+ A R Y Y + Sbjct: 61 SLGNVISFQSEKEVRVNEINNSL------PDDIQILAKAPVRFGFKPRY-AEMRQYRYVL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 LD + A+ G H+FT F + RTID Sbjct: 114 ----------------FRSDLDLYKLNEVAEIFKGTHNFTNFTKRF--QKTTTRTIDDIK 155 Query: 177 VN----------SFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + F NL + + + SFL +R + V GK + +E+ Sbjct: 156 ITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEE 215 Query: 221 AL--QAQDRKECGPLAPPEGLYFDSVEYS 247 L D + + P+ L ++Y Sbjct: 216 LLNPAENDPRANIKVLDPDYLILMDIKYD 244 >gi|254779646|ref|YP_003057752.1| tRNA pseudouridine synthase A [Helicobacter pylori B38] gi|254001558|emb|CAX29576.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Helicobacter pylori B38] Length = 242 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIEGALNALGIKSV-VIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 L A SLD + A + G+HDF+ F+ ++P R I + + Sbjct: 116 KTPFLAPYIARGDYGSLDL--LNTALKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTA 173 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri] gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri] Length = 813 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 99/265 (37%), Gaps = 38/265 (14%) Query: 4 YCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLV--------TGEIVVVHGAGRTD 52 + + Y G Y G+ Q +++ ++ +A+ + GRTD Sbjct: 456 IALKVAYLGWPYRGFASQGPEATTPTVEWTLFEALAKTRLVAAAADVFKTASYARCGRTD 515 Query: 53 SGVHALRQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GV L Q+ + + LN L + L + VD++ +ARF Sbjct: 516 RGVSGLGQIVTLQVRSNGASDPREELDYVGLLNRAL--PSDVRALGWAPVDEELNARFDC 573 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-AS 166 R Y Y EK A LD E M AA+ G HDF F + + Sbjct: 574 KWRQYKYF---------FEKTTA------LDLEAMGEAARAFEGVHDFRNFCRMDAENVK 618 Query: 167 SPIRTIDHFDVNSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--L 222 S R + + G+ L+ I V +FL Q+R+ L +VG G + +E+ L Sbjct: 619 SFTRRVLECTIEEAGDGKLMYINVRGTAFLWHQVRNMASVLFMVGLGHEPPSVVERLLDL 678 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 + RK P+AP E L Y Sbjct: 679 ERTPRKPQYPMAPEESLLLWRSGYD 703 >gi|148642915|ref|YP_001273428.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii ATCC 35061] gi|226708656|sp|A5ULI2|TRUA_METS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148551932|gb|ABQ87060.1| tRNA pseudouridine synthase A, TruA [Methanobrevibacter smithii ATCC 35061] Length = 290 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 99/269 (36%), Gaps = 47/269 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + + + + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +L D I IL + V F R+ A R Y Y + Sbjct: 61 SLGNVISFQSEKEVRVNEINNSL------PDDIQILAKAPVRFGFKPRY-AEMRQYRYVL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 LD + A+ G H+FT F + RTID Sbjct: 114 ----------------FRSDLDLYKLNEVAEIFKGTHNFTNFTKRF--QKTTTRTIDDIK 155 Query: 177 VN----------SFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + F NL + + + SFL +R + V GK + +E+ Sbjct: 156 ITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEE 215 Query: 221 AL--QAQDRKECGPLAPPEGLYFDSVEYS 247 L D + + P+ L ++Y Sbjct: 216 LLNPAENDPRANIKVLDPDYLILMDIKYD 244 >gi|260797314|ref|XP_002593648.1| hypothetical protein BRAFLDRAFT_252211 [Branchiostoma floridae] gi|229278875|gb|EEN49659.1| hypothetical protein BRAFLDRAFT_252211 [Branchiostoma floridae] Length = 259 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 116/254 (45%), Gaps = 37/254 (14%) Query: 31 IEKAIFLV-TGEIVVVHGAGRTDSGVHALRQVAHFDLV-----REWVPVILCKALNA--Y 82 ++ A + E +H + RTDSGVHAL AH DL+ + P + A+N Sbjct: 1 LQDAFSHLKLAEPPNIHVSSRTDSGVHALCNTAHADLIYGDDKEPFDPDSIVHAVNRSIL 60 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL---EKGRAWLIPKSLDC 139 I ++N V F +R A+ R+YLYR+++ L E R+W I + LD Sbjct: 61 HMGRTDIRLMNCRPVSPTFSSRHQALGRTYLYRVVSGCYHSRLPIPEVNRSWGIKERLDI 120 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHFDVNSFG-------------NLI 184 E M+ AA+H +G HDFTTFRS + P++T+ +V ++ Sbjct: 121 EAMQEAAKHFLGTHDFTTFRSKTPETWTKDPVKTMKVVEVRRASCFLKEHDPFCRDLEVL 180 Query: 185 EIRVVARSFLHT--------QIRSFVGSLKLVGDGKWTSTDLEKALQAQD---RKECGPL 233 E+ +RSFL+ Q+R G L +G GK D+ L + + + Sbjct: 181 ELIFKSRSFLYRQAIVLSLLQVRRMTGLLVAIGRGKLQPEDVCTLLAVRKIAAYPKAAQV 240 Query: 234 APPEGLYFDSVEYS 247 AP GLY +VEY+ Sbjct: 241 APAHGLYLCNVEYN 254 >gi|261403437|ref|YP_003247661.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7] gi|261370430|gb|ACX73179.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7] Length = 259 Score = 171 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 107/250 (42%), Gaps = 35/250 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G Y +Q Q + +++ + + + +++ GRTD GV AL Sbjct: 2 YILKIAYDG-RYS-FQTQPHRNTVCDKVLNTLDEIDLLERRKIIYCGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L +E P +NA LK ++ I +L ++K R+ R Y Y + Sbjct: 60 IVVELKKEPSPS----YINAKLK-NEGIWVLGYREIEKIPEVRY----RHYRYILPNMGY 110 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSF 180 D E ++ A L G H F + SPIRTI DV+ Sbjct: 111 ----------------DVEAIKRGASILTGTHSFHNLSKKDRTKDRSPIRTIFKIDVSEN 154 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +SFL +R VG+L LVG G+ +EK L+ +D KE P PP+GL Sbjct: 155 EFYITLDIFGKSFLWNMVRKMVGALDLVGRGERPVNWIEKLLR-EDHKEGVPTFPPDGLI 213 Query: 241 F----DSVEY 246 V+Y Sbjct: 214 LVEANVDVDY 223 >gi|223040118|ref|ZP_03610398.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [Campylobacter rectus RM3267] gi|222878595|gb|EEF13696.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [Campylobacter rectus RM3267] Length = 483 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q Q + + ++ ++ A+ V G + + RTD GVHA QV Sbjct: 1 MRLKLVFSYDGSKFQGSQTQPHENGVEDALGAALAHV-GIFSKIISSSRTDKGVHANNQV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + K+L + + +S FH R+ A R+Y Y I + Sbjct: 60 ACVECGEHFRDFTRLKSL-INRHAHPAVHVKFISRARDCFHPRYDATARAYRYVINHGEF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +P+ D VG HDF+ F + SP+R + + G Sbjct: 119 -SPFLAPYETFLPR-FDLNLANELLALFVGEHDFSAFMKLGSDVKSPVRRVSKAFCYARG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVG----SLKLVGDGKWTSTDLEK 220 I A FL Q+R V +L+L +GK+ TD+ + Sbjct: 177 ERSIIVFKANGFLRAQVRLMVASVFKALELAKNGKFKETDVRE 219 >gi|224083654|ref|XP_002193509.1| PREDICTED: similar to Pseudouridylate synthase 3 [Taeniopygia guttata] Length = 462 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 97/277 (35%), Gaps = 49/277 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N +I+ + +A+ + H GRTD GV A Sbjct: 68 VALRIAYLGWGYQGFASQENTPNTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVSAF 127 Query: 59 RQVAHFDLVREWVP-------------VILCKALNAYLKISDTISILNLSIVDKQFHARF 105 QV DL L + I +L + V +F ARF Sbjct: 128 GQVISLDLRSSLPEGQQLNGHGGEGQQEELRYTHILNRVLPPDIRVLAWAPVGPEFSARF 187 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 S + R+Y Y Q LD M AAQ VG HDF + Sbjct: 188 SCLSRTYRYFFPCAQ----------------LDVALMDTAAQRYVGTHDFRNLCKMDVAN 231 Query: 166 S--SPIRTIDHFDVNSF-----------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + RTI V L + V ++FL+ Q+R + L L+G G Sbjct: 232 GVLNFQRTILRARVTRVSGGGEARPRDPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGM 291 Query: 213 WTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 + +++ L + RK +A L E+ Sbjct: 292 ESPDVIDELLNVEKNPRKPQYSMAVEFPLVLYDCEFP 328 >gi|289192063|ref|YP_003458004.1| tRNA pseudouridine synthase A [Methanocaldococcus sp. FS406-22] gi|288938513|gb|ADC69268.1| tRNA pseudouridine synthase A [Methanocaldococcus sp. FS406-22] Length = 262 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 35/248 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQVAH 63 + I Y+G Y +Q+Q + ++ + + + + +++ GRTD GV AL Sbjct: 8 LKIAYDG-RYS-FQQQPHKQTVCDILLDTLEEIDFLAKKKIIYSGGRTDKGVSALGNFVI 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 +L + + +NA LK I +L +D+ ++ R Y Y + Sbjct: 66 VELKK----EPILSYINAKLK-DKGIWVLGYREIDEIPKVKY----RHYRYILPNINY-- 114 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSFGN 182 + + ++ A+ ++G H F + SPIRTI ++ Sbjct: 115 --------------NIDAIKEGAKKMIGTHSFHNLSKRDKSKEKSPIRTIYDIKISENEF 160 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF- 241 + I ++ SFL +R VG+L LVG GK + K L ++ +E P PP+GL Sbjct: 161 YLTIDIIGESFLWNMVRKIVGALDLVGRGKKPVDWIGKLLD-ENHREGVPTFPPDGLILV 219 Query: 242 ---DSVEY 246 V+Y Sbjct: 220 EAKVDVDY 227 >gi|222445148|ref|ZP_03607663.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii DSM 2375] gi|222434713|gb|EEE41878.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii DSM 2375] Length = 288 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 99/269 (36%), Gaps = 47/269 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + + + + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +L D I IL + V F R+ A R Y Y + Sbjct: 61 SLGNVISFQSEKEVRVNEINNSL------PDDIQILAKAPVRFGFKPRY-AEMRQYRYVL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 LD + A+ G H+FT F + RTID Sbjct: 114 ----------------FRSDLDLYKLNEVAEIFKGTHNFTNFTKRF--QKTTTRTIDDIK 155 Query: 177 VN----------SFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + F NL + + + SFL +R + V GK + +E+ Sbjct: 156 ITKANLNDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEE 215 Query: 221 AL--QAQDRKECGPLAPPEGLYFDSVEYS 247 L D + + P+ L ++Y Sbjct: 216 LLNPAENDLRANIKVLDPDYLILMDIKYD 244 >gi|219120077|ref|XP_002180785.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407501|gb|EEC47437.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 347 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 71/306 (23%), Positives = 117/306 (38%), Gaps = 64/306 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---------------------KNGSSIQGSIEKAIFLVTG 40 +RY + Y+G+ + G+Q Q K ++QG +E + Sbjct: 37 VRYRARVAYDGTSFQGFQIQGSNKVVDDKNCNGITHQNRKDKQQRTVQGELETVLSTRWN 96 Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV---ILCKALNAYLKISDTISILNLSIV 97 + V V AGRTD+GVHA Q HFD+ P L ++L L T+ L + Sbjct: 97 QPVRVVAAGRTDAGVHARGQAIHFDVNVSETPTDHASLERSLARMLPTDVTLWNLQFAPS 156 Query: 98 DKQ-----------FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD-------- 138 + ++ + + Y YR+ T L + W P ++D Sbjct: 157 ARTKLVDGQERVLPWNVMYDNTHKLYSYRLSTAAVMDPLSRQHRWH-PDNVDAYVVGKAG 215 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQAS-------SPIRTIDHFDVNSFGNL--IEIRVV 189 + +H G HDF F S Q +RT+ +V N + I V Sbjct: 216 LAQLTRLLKHYEGTHDFRAFASAMEQLEKHSDGPIDTVRTVYSVNVVPEANEGDVRIDFV 275 Query: 190 ARSFLHTQIRSFVGSLKLVGDGK-WTSTDLEKALQAQDRKECG--------PLAPPEGLY 240 + L+ Q+R+ VG++ G+ +D+ + L QD G APP+GL Sbjct: 276 LKGALYKQVRNMVGTVLETCRGEIMKESDMLRLL--QDATASGLSRADNPSKPAPPQGLT 333 Query: 241 FDSVEY 246 ++V + Sbjct: 334 LENVYF 339 >gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus] Length = 480 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 102/282 (36%), Gaps = 54/282 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 64 VALRIAYLGWGYQGFASQENTTNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ ++ N+ + I IL + VD F Sbjct: 124 GQVISLDLRSQFPMAKDSESCNSKDEANDVAEEIRYTHILNRVLPPDIRILAWAPVDPGF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 184 SARFSCLERTYHY----------------FFPRADLDIVTMNCAAQKYVGTHDFRNLCKM 227 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 228 DVANGVINFQRTILSAKVQLVGQSLGEERWQEHFQLCQFEVTGQAFLYHQVRCMMAILFL 287 Query: 208 VGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 +G G +++ L + +K +A L ++ Sbjct: 288 IGQGMEKPDIIDELLNVEKNPQKPQYSMAVEFPLVLHDCKFE 329 >gi|237751255|ref|ZP_04581735.1| tRNA pseudouridine synthase A [Helicobacter bilis ATCC 43879] gi|229372621|gb|EEO23012.1| tRNA pseudouridine synthase A [Helicobacter bilis ATCC 43879] Length = 253 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 16/255 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 II Y+GS + G+ QK+ S+ E + + G + G+GRTD VHA Sbjct: 4 NIVCIIAYDGSKFCGFSHQKHTKGVLSVANFFELTLQKI-GIKAKIIGSGRTDKDVHATN 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + K LN L + I + I D FHARFSA R Y Y Sbjct: 63 QVINFHAKLYMPLDKMKKLLNDRLY--PFVLIKRIFIADSSFHARFSAKLRIYRYVFTQA 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L + D ++ A +G HDF+ F+ + IRTI + Sbjct: 121 EL-LPFYSNYIAKVRHG-DISLLQTALNEFIGTHDFSLFKKNGSETKDFIRTIVKAHIFP 178 Query: 180 FG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ---DRKECG- 231 + + A FL +Q+R + + G+ T +L + +Q ++ C Sbjct: 179 AKIHNISCFVAHIGANGFLRSQVRIMLKACFEFSLGRITLQNLVRQIQNDITLEKSLCVR 238 Query: 232 PLAPPEGLYFDSVEY 246 LAP GLY + Y Sbjct: 239 ELAPACGLYLHRIIY 253 >gi|195436012|ref|XP_002065972.1| GK25867, isoform A [Drosophila willistoni] gi|194162057|gb|EDW76958.1| GK25867, isoform A [Drosophila willistoni] Length = 508 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 85/286 (29%), Positives = 122/286 (42%), Gaps = 55/286 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQR------QK--NGSSIQGSIEKAI--FLVTGEIVVVHGAGR 50 M RY + I Y G+ + G Q+ Q + +S+QG +E A+ F T EI V + R Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLDQPRLDTNSVQGCLELALRVFRPTNEIQTVL-SSR 59 Query: 51 TDSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARF 105 TD+GVHAL H DL R + L LN L I +L+ +V FH R+ Sbjct: 60 TDAGVHALHSTIHVDLERYDGQPYALTTLTGVLNRTLGKQRLPIRVLSTELVPDTFHCRY 119 Query: 106 SAIRRSYLYRIITRQAPLALE-----KGRAWLIP------------KSLDCENMRIAAQH 148 AI R+YLYR + + +G IP S D E +R AA+ Sbjct: 120 HAIGRTYLYRFAVARNSPVDDGKLKNRGYEAFIPVEELDRCYFLQAASFDIERVRSAARL 179 Query: 149 LVGRHDFTTFRSIHCQASS-------PIRTIDHFDV---------------NSFGNLIEI 186 +G HDF TF S+ Q +R ID ++ N + EI Sbjct: 180 FLGIHDFRTFMSVSRQKGPSRDHPMFTVRKIDEINIRPGHSLALNAHAKLANETYDHWEI 239 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + A+SFL+ Q+R VG+L +G GK + + L + P Sbjct: 240 EIKAKSFLYKQVRRIVGTLLALGTGKIDEKCIYQMLTIPSKNSWEP 285 >gi|224370989|ref|YP_002605153.1| TruA2 [Desulfobacterium autotrophicum HRM2] gi|223693706|gb|ACN16989.1| TruA2 [Desulfobacterium autotrophicum HRM2] Length = 257 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 98/253 (38%), Gaps = 12/253 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GW +Q +++ +EK + + G + G+ RTD+ V A Sbjct: 6 YLIHIQYLGFRYHGWLKQPGLKTVEAMVEKTVAFILGHSDFKILGSSRTDAMVSANHSAF 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + L K N L + I ++ VD+ F + ++Y+Y + Sbjct: 66 ELFVHEPLNVEQLVKDFNQNL--PNDIRVIKAQGVDRNFSIINAPRTKAYIYLFAFGEKC 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-- 180 LD + M+ A GRH+F ++ + ++ R + + Sbjct: 124 HPFCAPLISSFCHWLDIDLMKQGALLFQGRHNFRSYCTKPGTRTTFKREVLVSKIEENRI 183 Query: 181 -------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + ++ F+ Q+R +G L +G G+ D++ +L+ + Sbjct: 184 FKANFFPAESYAYHIHSKGFMRYQVRLIMGQLLSLGRGEIGLEDIKVSLKGMSHLPLRHI 243 Query: 234 APPEGLYFDSVEY 246 AP GL + +E+ Sbjct: 244 APSSGLMLNKIEF 256 >gi|195490006|ref|XP_002092962.1| GE26463, isoform A [Drosophila yakuba] gi|194179063|gb|EDW92674.1| GE26463, isoform A [Drosophila yakuba] Length = 495 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/284 (27%), Positives = 117/284 (41%), Gaps = 52/284 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVFHPINEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL DL R + L LN L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQGLPIRVLSSKLVSNSFHCRYH 120 Query: 107 AIRRSYLYRIITRQAP----------------LALEKGRAWLIPKS-LDCENMRIAAQHL 149 AI R+YLYR + P E R + + S D ++ AA+ Sbjct: 121 AIGRTYLYRFAVAKDPSLEDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVQAAARMF 180 Query: 150 VGRHDFTTFRSIHCQASS------PIRTIDHFDVNSFG---------------NLIEIRV 188 +G HDF TF S+ Q S +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 A+SFL+ Q+R VG+L +G+G+ L + L + P Sbjct: 241 KAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDP 284 >gi|322493546|emb|CBZ28834.1| putative pseudouridine synthase A-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 499 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 106/264 (40%), Gaps = 36/264 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ + GRTD GV Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 ALRQ--------VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL D + P+ C LN L TI I+ ++VD F ARFS + Sbjct: 120 ALGNALSLTARASCTADAEPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDAFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 R+Y Y + + L+ M+ AA +G H+F F + S+ Sbjct: 178 HRTYRY----------------YFFHRGLNLAAMQEAAAFFLGTHNFRNFCKMDVVNVSN 221 Query: 168 PIRTIDHFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RT+ + L E+ + A SFL+ QIR + L LVG G + ++ L+ Sbjct: 222 FVRTVFSVGLYPSEELPELISYLEIRANSFLYHQIRCTMEVLFLVGRGLEAPSVVQTLLE 281 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 D K PLA L + Sbjct: 282 LGDCKPTYPLADGTPLVLWDCGFD 305 >gi|226533212|ref|NP_001145731.1| hypothetical protein LOC100279238 [Zea mays] gi|219884209|gb|ACL52479.1| unknown [Zea mays] Length = 486 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 96/270 (35%), Gaps = 44/270 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + + Y G ++G+ + N +++ I KA+ + GRTD GV A Sbjct: 151 VALKVMYFGQRFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSA 210 Query: 58 LRQVAHFDLVREW-----------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV L + K LN L I +L V FHARF+ Sbjct: 211 TGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFT 268 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QA 165 + R Y Y LD M+ AA +G HDF F + Sbjct: 269 CLSREYKYLFW----------------KGDLDILEMQKAASKFIGEHDFRNFCKMDAANV 312 Query: 166 SSPIRTIDHFDVNS------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 S+ R I F +++ L + + +FL Q+R V L L+G G + + ++ Sbjct: 313 SNYRRHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVD 372 Query: 220 KALQ--AQDRKECGPLAPPEGLYFDSVEYS 247 L RK +AP L S + Sbjct: 373 SLLDIMKTSRKPQYKMAPELPLILQSCLFD 402 >gi|110667083|ref|YP_656894.1| tRNA pseudouridine synthase A [Haloquadratum walsbyi DSM 16790] gi|109624830|emb|CAJ51238.1| tRNA-pseudouridine synthase [Haloquadratum walsbyi DSM 16790] Length = 276 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 67/255 (26%), Positives = 103/255 (40%), Gaps = 36/255 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + Y+G + G+QRQ + +++ ++ A+ + + AGRTD+G Sbjct: 5 MR-AFRLAYDGRPFSGFQRQPSVPTVEDALFDALDSLDVFNRDTDSKPSGYAAAGRTDAG 63 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V ALRQ F+ P +ALN+ L ++ + V FHA A++R+Y Y Sbjct: 64 VSALRQTVGFECPSWCTP----RALNSEL--PTSVRAWASADVQSGFHATHDALQRTYTY 117 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 +L LD + AA+ L G+HDF F S + + Sbjct: 118 ----------------YLYGPELDMNRLNTAAEILSGKHDFHNFTSDDDGTTRKLSITLE 161 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGP 232 FD I R+ A F + IR + +L+ VG T L L Q + P Sbjct: 162 FD----DPFITARITADGFPRSLIRRLMSALRGVGSESMTIETLTGLLNTVPQTGPDGIP 217 Query: 233 LAPPEGLYFDSVEYS 247 A PE L V Y Sbjct: 218 TASPEPLILTRVTYP 232 >gi|223558061|gb|ACM91066.1| tRNA pseudouridine synthase A [uncultured bacterium 34R1] Length = 189 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 5/189 (2%) Query: 60 QVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD+ LC++LN L +++ + V HARF A R+Y Y + T Sbjct: 1 MYAHFDVDAPIADTDGLCRSLNGLLGR--DVAVYAIFPVADDAHARFDATSRTYKYFLHT 58 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++P +W LD E M AA+HL+ DFT+F +H + + + Sbjct: 59 AKSP--FLYPLSWECHFDLDFELMNEAAEHLLHYTDFTSFSKLHTDVKTNNCRVTYAHWE 116 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + A FL +R+ VG+L VG + T + + ++A+DR E G P Sbjct: 117 RVGEQWVFTITADRFLRNMVRAVVGTLVEVGRHRITVDEFCRIIEAKDRCEAGNSMPGNA 176 Query: 239 LYFDSVEYS 247 L+ + Y Sbjct: 177 LFLWDITYP 185 >gi|194706182|gb|ACF87175.1| unknown [Zea mays] gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays] Length = 457 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 96/270 (35%), Gaps = 44/270 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + + Y G ++G+ + N +++ I KA+ + GRTD GV A Sbjct: 122 VALKVMYFGQRFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSA 181 Query: 58 LRQVAHFDLVREW-----------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV L + K LN L I +L V FHARF+ Sbjct: 182 TGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFT 239 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QA 165 + R Y Y LD M+ AA +G HDF F + Sbjct: 240 CLSREYKYLFW----------------KGDLDILEMQKAASKFIGEHDFRNFCKMDAANV 283 Query: 166 SSPIRTIDHFDVNS------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 S+ R I F +++ L + + +FL Q+R V L L+G G + + ++ Sbjct: 284 SNYRRHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVD 343 Query: 220 KALQ--AQDRKECGPLAPPEGLYFDSVEYS 247 L RK +AP L S + Sbjct: 344 SLLDIMKTSRKPQYKMAPELPLILQSCLFD 373 >gi|297380269|gb|ADI35156.1| tRNA pseudouridine synthase A [Helicobacter pylori v225d] Length = 242 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L + + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAKLFYHLAPKLAPH--VVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQVQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis] Length = 455 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 98/281 (34%), Gaps = 55/281 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q+N + +I+ + +A+ + H GRTD GV A Sbjct: 66 VALKIAYLGWEYQGFASQENTNNTIEEKLFEALGKTRLVKNRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVI-----------------LCKALNAYLKISDTISILNLSIVDKQF 101 QV DL LN L I +L + V+ F Sbjct: 126 GQVISLDLRSNLPENKPGDTATNKATKASEEIHYTHILNQVL--PPDIRVLAWAPVEPNF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARF+ ++R+Y Y +LD M AAQ VG HDF + Sbjct: 184 SARFNCLKRTYRYFFPCA----------------TLDVALMNRAAQKFVGTHDFRNLCKM 227 Query: 162 H--CQASSPIRTIDHFDVNSFGN-----------LIEIRVVARSFLHTQIRSFVGSLKLV 208 +S RTI +V + V ++FL+ Q+R + L L+ Sbjct: 228 DVANGVTSFHRTILAAEVQPVDGESETEQQNPFRMYYFEVTGQAFLYHQVRCMMAILFLI 287 Query: 209 GDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 G +++ L + RK +A L ++ Sbjct: 288 GQRMERPEIIDELLDIEKNPRKPQYSMAVEFPLVLYDCDFE 328 >gi|303284649|ref|XP_003061615.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456945|gb|EEH54245.1| predicted protein [Micromonas pusilla CCMP1545] Length = 390 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/257 (30%), Positives = 112/257 (43%), Gaps = 44/257 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH---GAGRTDSGVHALR 59 RY + I+Y+G + G+QRQ N ++QG +E+A+ TG VH G+ RTD+GVHAL Sbjct: 7 RYLLRIQYDGGAFHGFQRQANARTVQGCVEEAMAKFTGVEGGVHAITGSSRTDAGVHALD 66 Query: 60 QVAHF----------DLVREWVPVILCKALNAYLK-ISDTISILNLSIV-DKQFHARFSA 107 AH + KA+N YL+ + SI + + V + FHAR+ A Sbjct: 67 ATAHVDIDDGDAGDAPPPPPHSARTVMKAVNHYLRKTAPMASIASCARVCPETFHARYCA 126 Query: 108 IRRSYLYRIITRQA-PLALEKGRAWLIPK---------------------SLDCENMRIA 145 R+Y Y I + P ++G+AW + LD + M A Sbjct: 127 TARTYRYLIYLGRDEPSVFDRGKAWHVYDGRNASGAGVNTHEPSGGCALGGLDVDAMNAA 186 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 A+ VG HDF+ FR+ CQASSPIR + V+ +A S V Sbjct: 187 ARRFVGEHDFSAFRANGCQASSPIRRLHVLRVDRAMPWPSFPSIASQD------SMVMHS 240 Query: 206 KLVGDGKWTSTDLEKAL 222 V DL + L Sbjct: 241 FDVAK-PMEEDDLSEVL 256 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA-QDRKECGPLAPPEGLY 240 I I A SFL+ Q+R VG+L+ VG G+ + D+ L+ D P+AP GLY Sbjct: 284 GHIVITARAPSFLYHQVRLMVGTLRAVGAGELSPDDVTDLLEGTTDASRAPPMAPAHGLY 343 Query: 241 FDSVEYS 247 + V Y Sbjct: 344 LERVHYD 350 >gi|317009700|gb|ADU80280.1| tRNA pseudouridine synthase A [Helicobacter pylori India7] Length = 242 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + + V V AGRTD GVHA Q Sbjct: 1 MRCFKTTIAYDGAYFLGYAKQPNKLGVQDKIESALNALGIKSV-VIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L L I + L K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SL + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSL--VALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor] gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor] Length = 459 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 95/264 (35%), Gaps = 44/264 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + + Y G ++G+ + N +++ I KA+ + + GRTD GV A Sbjct: 124 VALKVMYFGQRFYGFSSEGNTEPTVESEIFKALERAKLMVGSRKESCYSRCGRTDKGVSA 183 Query: 58 LRQVAHFDLVREW-----------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV L + K LN L I +L V FHARF+ Sbjct: 184 TGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFT 241 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQA 165 + R Y Y LD M+ AA +G HDF F + Sbjct: 242 CLSREYKYLFW----------------KGDLDILEMQKAASKFIGEHDFRNFCKMDAANV 285 Query: 166 SSPIRTIDHFDVNS------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 S+ R I F +++ L + + +FL Q+R V L L+G G + + ++ Sbjct: 286 SNYRRRITEFTISACDRRSNNDELCSMMIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVD 345 Query: 220 KALQ--AQDRKECGPLAPPEGLYF 241 L RK +AP L Sbjct: 346 SLLDITKTPRKPQYKMAPELPLIL 369 >gi|150403192|ref|YP_001330486.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C7] gi|150034222|gb|ABR66335.1| tRNA pseudouridine synthase [Methanococcus maripaludis C7] Length = 262 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 33/248 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGR--LSFQTQPHGETVCDKISNALLDCGYLDDKDRVPLYHGGRTDRGVSALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ V + L D I +L +D + R Y Y + Sbjct: 60 NYIVYEMDKKPVLPRVQSNL-----KKDGIWVLGCKEIDTFPEIEY----RHYQYNLPN- 109 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVN 178 K+ D E M+ A++ L+G H F + P+RT+ ++ Sbjct: 110 ---------------KNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLHDIKIS 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW-TSTDLEKALQAQDRKECGPLAPPE 237 S I I + SFL +R + L VG K+ + + ++D + P +P E Sbjct: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDVGKHKFEDPEKFIELILSKDYNKGYPPSPAE 214 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 215 GLILVDVK 222 >gi|301117110|ref|XP_002906283.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] gi|262107632|gb|EEY65684.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] Length = 316 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 120/287 (41%), Gaps = 50/287 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQK-------NGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDS 53 RYC+ I Y G+G+ GWQRQ+ S+Q +E A+ G + V V G RTD+ Sbjct: 18 RYCLHIAYYGTGFVGWQRQQQETKSSSGHDSVQEVVEAAVTETLGTSKRVNVTGVSRTDA 77 Query: 54 GVHALRQVAHFDLVREWVP--VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 G HAL Q L E L +N L I +++L ++ V +R + + Sbjct: 78 GTHALYQFGFIRLDSELPMTMDELKDRVNTKLDIGR-VAVLGVT-VPTTGPSRIRSRYKK 135 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR----SIHCQASS 167 Y+Y + P +W + + LD + +R A + L G HDF F + + Sbjct: 136 YIYYLQQGHRPDLELGKYSWFLGRRLDIQRIRDALKFLEGTHDFRPFSQGLQKPKFEDMT 195 Query: 168 PIRTIDHFDVNSFGN-------------------------------LIEIRVVARSFLHT 196 +RT+ V + N + I +VA FL Sbjct: 196 TLRTVMSAKVVARRNVNFSLDPPVSGSGEIIDAADMYREPGNTPVHFVCIELVANGFLRH 255 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +R +G+L+ +G+G ++ +++ L + + GP AP +GL+ Sbjct: 256 MVRRIIGTLRPIGEGTQPASRMQQVLAGEV--QPGPSAPTKGLWLHR 300 >gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris RN66] gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris RN66] Length = 332 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 98/272 (36%), Gaps = 38/272 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 R+ I Y G+ Y+G Q +I+ A + E + GRTD GVH+ Sbjct: 26 RFLFRISYIGTNYYGMAYQNETIPTIEREFYNACLRLKLIKNREDCDLIRCGRTDKGVHS 85 Query: 58 LRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L R+ P + +N L I IL V+ F ARF R Y Y Sbjct: 86 TGNYISINLRTRDTSPYNYQEMINGVL--PWDIRILGFCQVNNNFSARFDCDSRVYKYIF 143 Query: 117 ITRQAPLALEKGRAWLIPKSLDC---ENMRIAAQHLVGRHDFTTFRSIHCQAS---SPIR 170 Q E L+ + M + + +G HDF F + + + +R Sbjct: 144 PIDQIQN-FEHNY----FPKLNINHIDQMNKSCKQFIGTHDFRVFCKMDIKNRPNQTYVR 198 Query: 171 TIDHFDVNSFGN----------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 TI F V F N L I ++ +FL Q+R VG L + GK Sbjct: 199 TIYDFRVEVFNNNKISSSSFDNSINDTKLGVITIIGSAFLWHQVRLMVGILFEISLGKIR 258 Query: 215 STDLEKALQA---QDRKECGPLAPPEGLYFDS 243 S + K L +D P+A GL Sbjct: 259 SECITKLLDNYFDKDEIPFFPMASEIGLILWD 290 >gi|159905071|ref|YP_001548733.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C6] gi|238686937|sp|A9A828|TRUA_METM6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|159886564|gb|ABX01501.1| tRNA pseudouridine synthase [Methanococcus maripaludis C6] Length = 262 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 33/248 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGR--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVSALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ V + L D + +L +D + R Y Y + Sbjct: 60 NYIVYEMDKKPVLPRVQSKLKW-----DGVWVLGCKEIDTFPEIEY----RHYQYNLPN- 109 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVN 178 K+ D E M+ A++ L+G H F + P+RT+ + ++ Sbjct: 110 ---------------KNHDVELMKKASEKLIGTHYFQNLSKRDKSKVKDPVRTLYNIKIS 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT-STDLEKALQAQDRKECGPLAPPE 237 S I I + SFL +R + L +G K + + ++D + P +P E Sbjct: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIKDPEKFIELILSEDYSKGYPPSPAE 214 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 215 GLILVDVK 222 >gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena thermophila] gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena thermophila SB210] Length = 481 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 98/262 (37%), Gaps = 41/262 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 Y + + Y G Y G Q+ ++++ + KA+ T + +GRTD GV AL Sbjct: 114 YALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKTTLIKNRDNCNFTRSGRTDKGVSAL 173 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV L + + D I IL S VD F+ARF +R Y Y Sbjct: 174 GQVIGITLRTSIK-------IGENIDEIDDIRILGCSKVDPAFNARFDCQKRIYKY---- 222 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDV 177 + +D + M+ AA +G HDF F I Q + +R I D+ Sbjct: 223 ------------YFFENQMDIQRMKEAANLFLGEHDFRNFCKIDVLQTLNYVRIIYQLDI 270 Query: 178 NS----------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 L + +FL QIR+ + L LVG + + + + L Q Sbjct: 271 EEVQANFGTLDPRSKLYVATIQGSAFLWHQIRNMMAILFLVGRKQEEPSIVTELLDIQKN 330 Query: 228 --KECGPLAPPEGLYFDSVEYS 247 K +AP L Y+ Sbjct: 331 PSKPNYEMAPDYPLVLFDCLYN 352 >gi|57242355|ref|ZP_00370294.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis RM3195] gi|57017035|gb|EAL53817.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis RM3195] Length = 240 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q + +S+Q + A G V A RTD GVHALR V Sbjct: 1 MRLKLVFSYDGSAFLGSACQPHLNSVQDA-LAAALAHLGIFSPVLFASRTDKGVHALRAV 59 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + V L + +N + I I +L V + + RF R Y Y + Sbjct: 60 ACVECGEHFKDLVYLKRQINRFTH--PFIHIKSLERVSENYAVRFDVRAREYRYIFHHGE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + D + H VG DF F+ A + +R + ++ Sbjct: 118 F-NPFLSPYVCFSER-FDIKKANELLSHFVGEKDFKFFQKAGGSAKTSVRIMFFARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L A FL QIR V S+ V G+ + L++ ++A+ LAP GLY Sbjct: 176 KDLSIFCFRANGFLRAQIRLSVASVMAVLRGELSEDKLKEQIEAKKCHY-RFLAPANGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRIIY 240 >gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC 50983] gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC 50983] Length = 387 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 98/278 (35%), Gaps = 50/278 (17%) Query: 3 RYCMIIEYNGSG--------------------YFG--WQRQK--NGSSIQGSIEKAIFLV 38 R+ M Y G+ Y G WQ Q+ ++++ + K + Sbjct: 34 RFVMKFAYVGTRQASFPSTTMALKVCVEAVLRYAGVAWQNQEAFGVNTVENELFKGLVKT 93 Query: 39 T----GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNL 94 GRTD GVHA A L + + D I +L + Sbjct: 94 CLIESRMSCDFSRCGRTDKGVHARGNYATLRLRLKPDGTEFPYIQMINRVLPDDIRVLRI 153 Query: 95 SIVD-KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 V F ARFS R+Y Y + LD E M AAQ LVG+H Sbjct: 154 CSVPSDDFDARFSCKSRTYKYFFPST----------------GLDLEVMAEAAQRLVGQH 197 Query: 154 DFTTFRSIHCQASSPI-RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 D+ F + + ++ RTI F++ + + + +FL Q+R + L L+G G Sbjct: 198 DYRNFCRMDVEQTTNFERTIYSFEICNGDVISHAVITGSAFLWHQVRCMMEVLMLIGKGL 257 Query: 213 WTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEYS 247 + L ++ P LA GL +Y Sbjct: 258 EKPEVI-DMLFDINKTPGKPSYDLADGAGLVLFDCKYD 294 >gi|219888663|gb|ACL54706.1| unknown [Zea mays] Length = 271 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 8/194 (4%) Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + + A+N I + +S +FHAR S + Y Y+I Sbjct: 51 QVAHFTTPFSYSCLSSIHSAMNGL--PPPEIRVREISAARPEFHARSSTKSKVYRYKIYN 108 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFD 176 A+ L+ M+ AA + VG HDFT+F + + P + I FD Sbjct: 109 EAIMDPFHNHYAYHSAYKLNPHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFD 168 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL--- 233 V G ++++ V FL+ Q+R+ V L VG + + A+DRKE + Sbjct: 169 VTEMGAVLQLEVEGTGFLYRQVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALS 228 Query: 234 APPEGLYFDSVEYS 247 APP GLY SV Y Sbjct: 229 APPHGLYLMSVNYD 242 >gi|222480083|ref|YP_002566320.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239] gi|222452985|gb|ACM57250.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239] Length = 293 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 106/255 (41%), Gaps = 28/255 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL----------VTGEIVVVHGAGRTDSG 54 + Y+G Y G+QRQ + ++++G++ +A+ AGRTD+G Sbjct: 10 AFRVAYDGREYAGFQRQPHATTVEGTLLRALAKHGILDRGDGPTHATPPGYAAAGRTDAG 69 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ Q F+ P +A N +L ++ + + V FHA A+RR+Y Y Sbjct: 70 VSAVAQTVAFEAPDWLTP----RAFNGHL--PGSVRVWAAADVPAGFHATHDAVRRTYRY 123 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + A + ++D +R A L G D F ++ + +R + Sbjct: 124 HLY------APARVEETDHDHAVDDGRVRDALARLSGEQD---FHNLTSDETGTVRDLT- 173 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGP 232 G+++ + V A F +R V +++ VG G + +++ L ++ + Sbjct: 174 TTATREGDILVVEVSAGGFPRALVRRLVAAVRAVGRGTADPSLIDRLLASEPISGEFGIG 233 Query: 233 LAPPEGLYFDSVEYS 247 APPE L V Y Sbjct: 234 PAPPEPLVLWDVSYE 248 >gi|86143390|ref|ZP_01061792.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] gi|85830295|gb|EAQ48755.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] Length = 261 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 90/253 (35%), Gaps = 14/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ+Q + +++ +++ + V G AGRTD+ V Sbjct: 8 YLLKIQYLGFRYHGWQKQPDLLTVERMMQRTLKYVLGRNNFKFIAAGRTDAKVSVNETYV 67 Query: 63 HFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 L K N L I +L + Q + + + Y+Y + Sbjct: 68 ELILKEESLTDLQEFHKLFNENL--PQDIRLLEIIEKADQTNIIQAPKLKEYIYLFSFGE 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L+ E M+ A + G HD+ + + + TI+ + Sbjct: 126 KNHPFCAPYMINAKGELNIELMQKGAALMQGTHDYRNYAYKASAETQTVMTIESSVIEEN 185 Query: 181 ---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + RVV F Q+R +G+L +G G + EK+L + + Sbjct: 186 TLYTANFFPKHSYVFRVVGAGFKRHQVRLMMGALFDLGSGVLSWEAFEKSLDGKIPFKLT 245 Query: 232 PLAPPEGLYFDSV 244 +A GL V Sbjct: 246 HIAQASGLILQEV 258 >gi|163755611|ref|ZP_02162730.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] gi|161324524|gb|EDP95854.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] Length = 262 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 95/258 (36%), Gaps = 17/258 (6%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGV 55 M R Y + ++Y G Y GWQ+Q + +++Q E+ + V G + +GRTD+ V Sbjct: 1 MKRNRKYYLITLQYLGFRYHGWQKQPDVNTVQRMTERTLAYVFGHKNFKLLASGRTDAKV 60 Query: 56 HALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A L N L I L ++ +++F+ + Y+Y Sbjct: 61 SANEIAIELFLDNETLNIPEFLPLFNKNL--PQDIRALAITETNEKFNIIQHPKVKEYIY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + LD E M+ A+ G H T+ + + I+ Sbjct: 119 LFAFGEKYHPFAAPYMTNVLGDLDVELMKKGAKLFEGNHYLKTYCYKPTEHTILEGEIEL 178 Query: 175 FDVNSFG---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ +RV F QIR +G+L L+G + ++++L Sbjct: 179 CEITENDLYTASFFPEKSYVLRVQGAGFKRHQIRMMMGTLILLGRHELDLDFIKRSLLPN 238 Query: 226 DRKECGPLAPPEGLYFDS 243 E +AP GL + Sbjct: 239 STLEVNYIAPASGLMLNK 256 >gi|149716663|ref|XP_001505142.1| PREDICTED: pseudouridylate synthase 3 [Equus caballus] Length = 479 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 94/256 (36%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 63 VALRIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 122 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL + + N + I +L + V+ F Sbjct: 123 GQVISLDLRSHFPNGRDSEDFNLKDEVNDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSF 182 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 183 SARFSCLERTYRY----------------FFPRADLDIITMNSAAQKYVGTHDFRNLCKM 226 Query: 162 H--CQASSPIRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI V G L + V+ ++FL+ Q+R + L L Sbjct: 227 DVANGVINFQRTILSAQVQLVGQSLAEERGQEPFQLCQFEVIGQAFLYHQVRCMMAILFL 286 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 287 IGQGMEKPEVIDELLN 302 >gi|134046431|ref|YP_001097916.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C5] gi|132664056|gb|ABO35702.1| tRNA pseudouridine synthase [Methanococcus maripaludis C5] Length = 262 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 33/248 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDKVPLYHGGRTDRGVAALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ V + L D I +L ++ R Y Y + Sbjct: 60 NYVVYEMDKKPVLPRVQSKLKW-----DGIWVLGCKEIE----IFPEIEHRHYQYTLPN- 109 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVN 178 K+ D E M+ A++ L+G H F + P+RT+ ++ Sbjct: 110 ---------------KNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKIS 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW-TSTDLEKALQAQDRKECGPLAPPE 237 S I I + SFL +R + L +G K + + +++ K+ P +P E Sbjct: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIEDPEKFIELILSEEYKKGYPPSPAE 214 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 215 GLILVDVK 222 >gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine synthase 3 [Callithrix jacchus] Length = 477 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 94/253 (37%), Gaps = 49/253 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 64 VALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALNA--------------YLKISDTISILNLSIVDKQFHAR 104 QV DL ++ + N + I IL + V+ F AR Sbjct: 124 GQVISLDLRSQFPRRRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSAR 183 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-- 162 FS + R+Y Y + LD M AAQ VG HDF + Sbjct: 184 FSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVA 227 Query: 163 CQASSPIRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKLVGD 210 + RTI V G L + V ++FL+ Q+R + L L+G Sbjct: 228 NGVINFQRTILSAQVQPVGQSPDEERWQVPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQ 287 Query: 211 GKWTSTDLEKALQ 223 G +++ L Sbjct: 288 GMEKPEIIDELLN 300 >gi|57085889|ref|XP_536533.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine isomerase 3) (tRNA pseudouridylate synthase 3) [Canis familiaris] Length = 480 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + A+ + + H GRTD GV A Sbjct: 64 VALKIAYLGWGYQGFASQENTNNTIEEKLFDALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL + + N + I +L + V+ F Sbjct: 124 GQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRVLAWAPVEPSF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 184 SARFSCLERTYRY----------------FFPRADLDIITMNYAAQKYVGTHDFRNLCKM 227 Query: 162 H--CQASSPIRTI------------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RT+ D L + VV ++FL+ Q+R + L L Sbjct: 228 DVANGVINFQRTVLFAQVELVGQSLDKEQWQEPFQLCQFEVVGQAFLYHQVRCMMAILFL 287 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 288 IGQGMEKPEIIDELLN 303 >gi|315638468|ref|ZP_07893645.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis JV21] gi|315481459|gb|EFU72086.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis JV21] Length = 240 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q + +S+Q + A G V A RTD GVHALR V Sbjct: 1 MRLKLVFSYDGSAFLGSASQPHLNSVQDA-LAAALAHLGIFSPVLFASRTDKGVHALRAV 59 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + + V L + +N + I I +L V + + RF R Y Y + Sbjct: 60 ACVECGKHFKDLVYLKRQINRF--AHPFIHIKSLERVSENYAVRFDVRAREYRYIFHHGE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + D + H VG DF F+ A + +R + ++ Sbjct: 118 F-NPFLSRYVCFSER-FDIKRANELLSHFVGEKDFKFFQKAGGSAKTSVRIMFFARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L A FL QIR V S+ V G+ + L++ ++A+ LAP GLY Sbjct: 176 KDLSIFCFRANGFLRAQIRLSVASVMAVLRGELSEDKLKEQIEAKACHY-RLLAPANGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRIIY 240 >gi|324505293|gb|ADY42276.1| tRNA pseudouridine synthase A [Ascaris suum] Length = 491 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 26/268 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVV------VHGAGRTD 52 RY M+I Y G Y G Q QK+ +I+G + A+ +T E V+ A RTD Sbjct: 62 TRYAMLIAYQGKNYCGMQVQKDAPTIEGCLLNAMQKYGLITDEEVIKPNLFFFQRAARTD 121 Query: 53 SGVHALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A+RQ+ L E +P + LN L + I ++ + + F+A+ R+ Sbjct: 122 RAVSAVRQMCSMMLNFDEQLPKTVPDELNKLL--PEDIRVMGIRRATRTFNAQKDCDART 179 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIR 170 Y Y + T E + + Q VG H+F + S R Sbjct: 180 YSYTLPTYAFAKVDELTSSAYRITDETINEINALLQIFVGTHNFFNYTSKREFSDRSCFR 239 Query: 171 TIDHFDV-----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 I F N + I + +SF+ QIR +G + + G +D++ Sbjct: 240 YIIDFKCGAKFLFKNELRNEDVEFLTISIKGQSFMLHQIRKMIGMVIAISRGLLYKSDIQ 299 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ ++ + P AP GL + V Y Sbjct: 300 RSFESA--RMDVPKAPGLGLLLEKVHYD 325 >gi|218460354|ref|ZP_03500445.1| tRNA pseudouridine synthase A [Rhizobium etli Kim 5] Length = 141 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 78/121 (64%), Positives = 95/121 (78%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV G LIEI Sbjct: 1 AGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTRSGALIEI 60 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R A+SFLH QIRSF G+LKL G+GKWT D+E AL+A++RK CGP+APP+GLYF V+Y Sbjct: 61 RATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARNRKACGPVAPPDGLYFLQVDY 120 Query: 247 S 247 Sbjct: 121 P 121 >gi|271962666|ref|YP_003336862.1| tRNA-pseudouridine synthase I [Streptosporangium roseum DSM 43021] gi|270505841|gb|ACZ84119.1| tRNA-pseudouridine synthase I [Streptosporangium roseum DSM 43021] Length = 360 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 2/164 (1%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMR 143 + + + +++ + F ARFSA+ R Y YR+ L + + LD + + Sbjct: 178 LPPDVRVYRVTVAPRGFDARFSAMSRRYAYRVSDAPGGVDPLRRREVIWYGRPLDVDRLN 237 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 AA L+G HDF F + ++ IR + D +++ VVA +F H+ +R+ VG Sbjct: 238 AAAAVLLGEHDFAAFCKKR-EGATTIRELQRLDWVRQDDILVATVVADAFCHSMVRALVG 296 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 SL VG+G+ + L R +AP GL + V Y Sbjct: 297 SLLPVGEGRLAVDWPGRVLTRAVRDSGVHVAPAHGLCLEEVRYP 340 Score = 97.2 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 M+R + + Y+G+ + GW +Q ++QG IE+A+ + E V+ AGRTD+GVHA Sbjct: 1 MVRLRLDLAYDGTDFSGWAKQPGRRTVQGEIEEALGKILRLPEPPVLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDL 66 QVAH DL Sbjct: 61 GQVAHVDL 68 >gi|219123859|ref|XP_002182234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406195|gb|EEC46135.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 308 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 75/311 (24%), Positives = 113/311 (36%), Gaps = 67/311 (21%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------------KN-----------GSSIQGSIEKAI 35 M Y +I+ Y+G+ + G+QRQ + ++Q +E+A+ Sbjct: 1 MPLYKLIVAYDGTRFNGFQRQSTTTDMSKKIALKRPHWDSATGKRKGIALTVQECLEQAL 60 Query: 36 FLVTGEIVVVHG-----AGRTDSGVHALRQVAHFDLVREWVPVILCK---ALNAYLKISD 87 TG V AGRTD GVHA QV L P L + ALN+ L Sbjct: 61 MDWTGNETNVEAFRFRFAGRTDKGVHARGQVVAVQLPIVVEPTELWRVHKALNSRL--PV 118 Query: 88 TISILNLSIVDK--QFHARFSAIRRSYLYRIITRQ-------------------APLALE 126 IS+ + + + F R + Y Y I R+ A A++ Sbjct: 119 DISVERVELCENQLDFDPRHDVQSKQYSYTIKFRRKAYNEEGQLLPICTSGPQSARSAMD 178 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN------S 179 WL P LD + Q L G+H F +F I T+D V Sbjct: 179 SPCLWLCPWVLDDSKLYELCQRLQGQHSFRSFVHRADRNLRDHILTLDRVWVEALSCTRE 238 Query: 180 FGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPP 236 ++ +R A+ F + +R+ VG V G + + + D + AP Sbjct: 239 DAPVVTVRLWFQAKGFRRSMVRNLVGFCVDVCRGMYQPDW-DALWEGSDEIAQKVHSAPA 297 Query: 237 EGLYFDSVEYS 247 GL +SV YS Sbjct: 298 CGLCLESVAYS 308 >gi|45357831|ref|NP_987388.1| tRNA pseudouridine synthase A [Methanococcus maripaludis S2] gi|62901319|sp|Q6M0K2|TRUA_METMP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|45047391|emb|CAF29824.1| tRNA pseudouridine synthase Related [Methanococcus maripaludis S2] Length = 262 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 98/248 (39%), Gaps = 33/248 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ V + L D I +L ++ R Y Y + Sbjct: 60 NYVVYEMDKKPVLPRVQSKLKW-----DGIWVLGCKKIE----IFPEIEHRHYQYTLPN- 109 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVN 178 K+ D E M+ A++ L+G H F + P+RT+ ++ Sbjct: 110 ---------------KNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKIS 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT-STDLEKALQAQDRKECGPLAPPE 237 S I I + SFL +R + L +G K + + ++D K+ P +P E Sbjct: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPPSPAE 214 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 215 GLILVDVK 222 >gi|328702786|ref|XP_003242010.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Acyrthosiphon pisum] Length = 358 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 119/287 (41%), Gaps = 42/287 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDS 53 RY + Y G+ + G QRQ + SS+QG +E A+ + +H + RTD Sbjct: 5 RYLLYFSYIGTRFRGVQRQLTYDMVHNDDPSSVQGLLEYALKQLQPLNTPKLHLSSRTDQ 64 Query: 54 GVHALRQVAHFDLVREWV--PVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRR 110 GVH+ + AH DL + P L +N +L + I +++ IV F+AR A R Sbjct: 65 GVHSFKSSAHLDLELPYTCHPNKLVFQVNNFLSSCEVPIKLVSAQIVPNDFNARSCAKWR 124 Query: 111 SYLYRIITRQA--------PLAL-----EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFT 156 YLYR+ ++ E R + I KS D E ++ +G D+ Sbjct: 125 KYLYRLAVVKSEFKDLYAERFVFPIPITEDKRCYFIQKSDFDVELVKNVLPLFIGTKDYK 184 Query: 157 TFRSIHCQAS--SPIRT-----------IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 TF + S IRT D++ + N +IRV ARSFL+ QIR VG Sbjct: 185 TFMGKSGLNTELSTIRTWNNIEIVPGRSFYPTDIDKYYNYWDIRVNARSFLYKQIRRTVG 244 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEYS 247 L V T D++ P AP GLY + Y Sbjct: 245 VLIKVAQNIITYDDVKYMFDNPSINSWNPKISTAPSYGLYLYDIGYD 291 >gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus] Length = 322 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 94/256 (36%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 72 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 131 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I +L + V+ F Sbjct: 132 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSF 191 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 192 SARFSCLERTYRY----------------FFPRADLDIATMNYAAQKYVGTHDFRNLCKM 235 Query: 162 H--CQASSPIRTIDHFDVN------------SFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI V L + V+ ++FL+ Q+R + L L Sbjct: 236 DVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFL 295 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 296 IGQGMEKPEIIDELLN 311 >gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus] Length = 316 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 94/256 (36%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I +L + V+ F Sbjct: 126 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSF 185 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 186 SARFSCLERTYRY----------------FFPRADLDIATMNYAAQKYVGTHDFRNLCKM 229 Query: 162 H--CQASSPIRTIDHFDVN------------SFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI V L + V+ ++FL+ Q+R + L L Sbjct: 230 DVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFL 289 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 290 IGQGMEKPEIIDELLN 305 >gi|296187338|ref|ZP_06855733.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296047860|gb|EFG87299.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 141 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 72/137 (52%) Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 ++YLY I + + A+ + ++L+ MR AA+ L G HDF +F S+ S + Sbjct: 5 KTYLYTINNNKFRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTKSTV 64 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 RTI++ + +I I V SFL +R VG+L VG G +D+EK L + R E Sbjct: 65 RTINYISITEEHGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAE 124 Query: 230 CGPLAPPEGLYFDSVEY 246 GP+A +GL ++Y Sbjct: 125 AGPMAAAKGLCLKDIQY 141 >gi|322368335|ref|ZP_08042904.1| tRNA pseudouridine synthase A [Haladaptatus paucihalophilus DX253] gi|320552351|gb|EFW93996.1| tRNA pseudouridine synthase A [Haladaptatus paucihalophilus DX253] Length = 263 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 91/251 (36%), Gaps = 32/251 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK---AIFLVTGEIVVVHGAGRTDSGVHAL 58 +R + Y+G ++G+QRQ + +++ S+ + A+ + AGRTDSGV AL Sbjct: 1 MR-AFRVAYDGRPFYGFQRQPDVPTVEDSLFESLRALGVADRVPDGYAAAGRTDSGVSAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q F+ P ++ I + + V FHA A R Y+Y Sbjct: 60 AQTVAFECPEWLTPSAF------NSELPAEIRVWASADVVPAFHATHDAYYREYVYHCYA 113 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +A + + A+ L G HD F ++ +R + DV Sbjct: 114 PRA----------------NLGLAKEASDRLSGEHD---FHNLTSDTEGTVRDL-GIDVV 153 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPP 236 G + A F +R V + + G ++ L + D + P A Sbjct: 154 QDGEYLVFTFQAGGFARNLVRRVVSLIHSIATGDAEMAKIDTVLAPEPLDGRAGVPCASA 213 Query: 237 EGLYFDSVEYS 247 LY V Y Sbjct: 214 HPLYLADVGYD 224 >gi|194864517|ref|XP_001970978.1| GG25359, isoform B [Drosophila erecta] gi|190652761|gb|EDV50004.1| GG25359, isoform B [Drosophila erecta] Length = 288 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 52/281 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALQVFHPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL DL R + L LN L I +L+ +VD FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQRLPIRVLSSQLVDNSFHCRYD 120 Query: 107 AIRRSYLYRIITRQ----------------APLALEKGRAWLIPKS-LDCENMRIAAQHL 149 AI R+YLYR + E R + + S D ++ AA+ Sbjct: 121 AIGRTYLYRFAVAKDSSLGDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVKAAARMF 180 Query: 150 VGRHDFTTFRSIHCQASS------PIRTIDHFDVNSFG---------------NLIEIRV 188 +G HDF TF S+ Q S +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A+SFL+ Q+R VG+L +G+G+ L + L + Sbjct: 241 KAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNS 281 >gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus] Length = 481 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 94/256 (36%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I +L + V+ F Sbjct: 126 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSF 185 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 186 SARFSCLERTYRY----------------FFPRADLDIATMNYAAQKYVGTHDFRNLCKM 229 Query: 162 H--CQASSPIRTIDHFDVN------------SFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI V L + V+ ++FL+ Q+R + L L Sbjct: 230 DVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFL 289 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 290 IGQGMEKPEIIDELLN 305 >gi|194864515|ref|XP_001970977.1| GG25359, isoform A [Drosophila erecta] gi|190652760|gb|EDV50003.1| GG25359, isoform A [Drosophila erecta] Length = 499 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 52/281 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALQVFHPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL DL R + L LN L I +L+ +VD FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQRLPIRVLSSQLVDNSFHCRYD 120 Query: 107 AIRRSYLYRIITRQ----------------APLALEKGRAWLIPKS-LDCENMRIAAQHL 149 AI R+YLYR + E R + + S D ++ AA+ Sbjct: 121 AIGRTYLYRFAVAKDSSLGDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVKAAARMF 180 Query: 150 VGRHDFTTFRSIHCQASS------PIRTIDHFDVNSFG---------------NLIEIRV 188 +G HDF TF S+ Q S +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A+SFL+ Q+R VG+L +G+G+ L + L + Sbjct: 241 KAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNS 281 >gi|227499255|ref|NP_075781.3| tRNA pseudouridine synthase 3 [Mus musculus] gi|52783242|sp|Q9JI38|PUS3_MOUSE RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus] gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus] Length = 481 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 94/256 (36%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I +L + V+ F Sbjct: 126 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSF 185 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 186 SARFSCLERTYRY----------------FFPRADLDIATMNYAAQKYVGTHDFRNLCKM 229 Query: 162 H--CQASSPIRTIDHFDVN------------SFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI V L + V+ ++FL+ Q+R + L L Sbjct: 230 DVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFL 289 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 290 IGQGMEKPEIIDELLN 305 >gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta] Length = 480 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 64 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I IL + V+ F Sbjct: 124 GQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVEPSF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 184 SARFSCLERTYRY----------------FFPRADLDIVAMDYAAQKYVGTHDFRNLCKM 227 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 228 DVANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 287 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 288 IGQGMEKPEIIDELLN 303 >gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens] Length = 481 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 93/256 (36%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + LN + I IL + V+ F Sbjct: 125 GQVISLDLRSQFPRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEIIDELLN 304 >gi|219363303|ref|NP_001136956.1| hypothetical protein LOC100217116 [Zea mays] gi|194697754|gb|ACF82961.1| unknown [Zea mays] Length = 201 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 5/168 (2%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + I + +S +FHAR S + Y Y+I A+ L+ M+ Sbjct: 5 LPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEAIMDPFHNHYAYHSAYKLNPHAMQE 64 Query: 145 AAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 AA + VG HDFT+F + + P + I FDV G ++++ V FL+ Q+R+ V Sbjct: 65 AANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVTEMGAVLQLEVEGTGFLYRQVRNMV 124 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEYS 247 L VG + + A+DRKE + APP GLY SV Y Sbjct: 125 ALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAPPHGLYLMSVNYD 172 >gi|153840131|ref|ZP_01992798.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] gi|149746249|gb|EDM57337.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] Length = 142 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 44/118 (37%), Positives = 67/118 (56%) Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G+ + I + Sbjct: 5 VSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHGDYVVIDIK 64 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY V+Y Sbjct: 65 ANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYLVDVDYP 122 >gi|307595363|ref|YP_003901680.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429] gi|307550564|gb|ADN50629.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429] Length = 272 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 26/246 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+GS + G+ + +SI+ + +AI + + A RTD GV A+ Sbjct: 1 MPTVAFKVFYDGSLFSGFT--GSTNSIEYYLRRAI-RYFIKDFKLSKASRTDPGVSAIGN 57 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + + ++ LN+ L + I + VD+ F AR +A+ R+Y+Y + Sbjct: 58 VVSINYIDSI--RLVPGMLNSRL--PNGIRAWAWAEVDEGFRAR-AAVSRTYVYVMP--- 109 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 WL D + MR AA+ VG HD + F+ + + I++ ++ F Sbjct: 110 ----------WLYE---DIDLMRSAAKLFVGVHDLSNFQVKEKGVPTTVM-INNVNIERF 155 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + V+ R F + IR V +L++VG G T +L ++ + RK P APP GL Sbjct: 156 GDYLVFIVIGRGFRNKMIRKIVNALRMVGSGILTIDELRDLIELRIRKPI-PPAPPYGLL 214 Query: 241 FDSVEY 246 +V Y Sbjct: 215 LLNVNY 220 >gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus] Length = 481 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 93/256 (36%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I +L + V+ F Sbjct: 126 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSF 185 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 186 SARFSCLERTYRY----------------FFPRADLDIATMNYAAQKYVGTHDFRNLCKM 229 Query: 162 H--CQASSPIRTIDHFDVN------------SFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 RTI V L + V+ ++FL+ Q+R + L L Sbjct: 230 DVANGVIDFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFL 289 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 290 IGQGMEKPEIIDELLN 305 >gi|126327379|ref|XP_001371991.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 575 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 102/284 (35%), Gaps = 56/284 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 68 VALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 127 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV +L + + N + I +L + V+ F Sbjct: 128 GQVISLNLRSQLPRDKDPEDKNLKDTVNDSVEEICYTHILNRVLPPDIRVLAWATVESSF 187 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y +LD E M AAQ VG HDF + Sbjct: 188 SARFSCLERTYRYFFPCA----------------NLDIEAMNDAAQKYVGTHDFRNLCKM 231 Query: 162 H--CQASSPIRTIDHFDVN--------------SFGNLIEIRVVARSFLHTQIRSFVGSL 205 + RTI V L + V+ ++FL+ Q+R + L Sbjct: 232 DVANGVINFQRTILSAKVQLVAFGSPEEKLQQQESFQLCQFEVIGQAFLYHQVRCMMAIL 291 Query: 206 KLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 L+G + +++ L + +K +A L ++ Sbjct: 292 FLIGQRMEKAEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE 335 >gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine synthase 3-like [Pongo abelii] Length = 481 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I IL + V+ F Sbjct: 125 GQVISLDLRSQFPRGKDSEDFNVKGEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEIIDELLN 304 >gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe 972h-] gi|74698445|sp|Q9UTB3|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05 gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe] Length = 450 Score = 164 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 95/259 (36%), Gaps = 29/259 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 Y G Y G Q +++G + +A+ GRTD GV Sbjct: 94 VAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFSRCGRTDKGVS 153 Query: 57 ALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ QV ++ E P+I C LN L I I + + F ARFS +R Y Y Sbjct: 154 AMGQVISLNVRHSERRPIIYCDVLNRLL--PADIRITGYAFPPEGFDARFSCKQRHYKY- 210 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTID 173 + T+ P SLD + M AA +G HDF F I Q ++ R I Sbjct: 211 LFTKDYP-----------GGSLDIDRMNEAAALYLGEHDFRNFCKIDASKQITNYHRRIL 259 Query: 174 H---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--K 228 ++ L + +FL Q+R + L L+G ++ + L + K Sbjct: 260 SSKVICIDPSTGLYAFDLQGTAFLWHQVRCMMAILFLIGQKLEPASLINDLLDIKKVPTK 319 Query: 229 ECGPLAPPEGLYFDSVEYS 247 +A L ++ Sbjct: 320 PIYDMASEYPLILYDCDFD 338 >gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine synthase 3 [Pan troglodytes] Length = 481 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 91/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL + + N + I IL + V+ F Sbjct: 125 GQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEIIDELLN 304 >gi|301320977|gb|ADK69620.1| putative tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 251 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 11/250 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQV 61 + + Y+GS Y GW Q N SIQ ++ KAI V TG+ + GA +TD+ VHAL Q Sbjct: 5 ILLSLCYDGSNYHGWINQTNAISIQTTLNKAIKKVIKTGQFKTI-GASKTDTNVHALDQK 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + KA+N L I IL+ VD F+ R + Y Y I Q Sbjct: 64 VLLIIYFTPILEKFIKAINKAL--PSDIKILDAKFVDPNFNIR-EVEYKIYHYYINDHQF 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS---PIRTIDHFDVN 178 + + + + +D ++ +G H+F F + + RTID V Sbjct: 121 DIFTNRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVL 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + I A F+ QIR + L + K ++T L + LQ K+ + + Sbjct: 181 RINNKVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLQG-IGKKTPFIIDAK 239 Query: 238 GLYFDSVEYS 247 GL ++++ Sbjct: 240 GLVLQKIQFN 249 >gi|242062120|ref|XP_002452349.1| hypothetical protein SORBIDRAFT_04g024110 [Sorghum bicolor] gi|241932180|gb|EES05325.1| hypothetical protein SORBIDRAFT_04g024110 [Sorghum bicolor] Length = 201 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + I + +S +FHAR S + Y Y+I A+ L+ M+ Sbjct: 5 LPPEIRVREISAARPEFHARTSTKSKVYRYKIYNEAIMDPFHNRYAYHSAYKLNPHAMQE 64 Query: 145 AAQHLVGRHDFTTFRSI---HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 AA + VG HDFT+F + + S + I FDV G ++++ V FL+ Q+R+ Sbjct: 65 AANYFVGTHDFTSFANAAHNDRERRST-KKITRFDVTEMGAVLQLEVEGTGFLYRQVRNM 123 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEYS 247 V L VG + + +DRKE + APP GL SV Y Sbjct: 124 VALLLQVGKEALPPDIVPAIIAVRDRKELAKVALSAPPHGLCLMSVNYD 172 >gi|171184695|ref|YP_001793614.1| tRNA pseudouridine synthase ACD [Thermoproteus neutrophilus V24Sta] gi|229470755|sp|B1YAT9|TRUA_THENV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170933907|gb|ACB39168.1| tRNA-pseudouridine synthase I [Thermoproteus neutrophilus V24Sta] Length = 255 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 35/246 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y I Y+G+ ++G+ S++ + +A+ V G RTD GV A+ Sbjct: 1 MP-YLYRIAYDGTLFYGFTGHP--RSLEPHLRRALGDVLG------RGSRTDPGVSAVGN 51 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + P A K+ + + + V + F+ R A R YLY Sbjct: 52 VV--MTSAKVQPAA------ANSKLPRGVWVWAAAEVPEGFNPR-RARSRHYLYVAP--- 99 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 D ++MR AA+ L G HD+ +F + +S + TI V + Sbjct: 100 -------------HWGEDLDSMREAAELLAGTHDYASFVQRRGEPASTVTTIFSITVETR 146 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ + V R F + IR ++ G G D+ L+ + + P AP EGL Sbjct: 147 GDLVFLHFVGRGFRNKMIRKLAWAILAAGRGVLRKRDIADLLE-RPKPGAVPSAPAEGLV 205 Query: 241 FDSVEY 246 ++Y Sbjct: 206 LLDIDY 211 >gi|18312431|ref|NP_559098.1| tRNA pseudouridine synthase ACD [Pyrobaculum aerophilum str. IM2] gi|24212564|sp|Q8ZXR6|TRUA_PYRAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|18159888|gb|AAL63280.1| tRNA pseudouridine synthase A [Pyrobaculum aerophilum str. IM2] Length = 256 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 98/249 (39%), Gaps = 38/249 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y I Y+G+ ++G+ N +E + L+ GEI + RTD GV A+ Sbjct: 1 MP-YLYRIAYDGTMFYGFTGHPNS------LEPRLRLIFGEI--LGRGSRTDPGVSAVGN 51 Query: 61 VAHFDLVREWVPVILCKALNA-YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V AL K+ ++ V + F+ R A R YLY Sbjct: 52 VVMTG---------RKMALGYVNSKMPKGAWAWGIAEVPEGFNPR-RAKLRRYLYVAP-- 99 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVN 178 D + MR AA+ L G HD+++F + + +P + T+ DV Sbjct: 100 --------------HWGEDVDVMREAAKLLTGTHDYSSFIQLRGEKHTPTVTTVYDIDVT 145 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+LI I R F + IR +L G G + DL L+ + R P AP EG Sbjct: 146 LRGDLIFIYFAGRGFRNKMIRKMAWALLAAGRGVLSVDDLADLLK-KPRPGAVPSAPAEG 204 Query: 239 LYFDSVEYS 247 L + Y Sbjct: 205 LVLLDIVYD 213 >gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens] Length = 481 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I IL + V+ F Sbjct: 125 GQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEIIDELLN 304 >gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens] gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct] gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct] gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct] gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct] Length = 481 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I IL + V+ F Sbjct: 125 GQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEIIDELLN 304 >gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545] Length = 281 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 100/274 (36%), Gaps = 51/274 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKNG------SSIQGSIEKAIFL-------VTGEIVVVHGAGR 50 + + Y G Y G+ Q N +I+G++ A+ T V GR Sbjct: 18 IALHVAYAGWDYHGFASQGNDAAEARSPTIEGALFAALKRTRLIADDATWTDVDYTRCGR 77 Query: 51 TDSGVHALRQVAHFD---------------LVREWVPVILCKALNAYLKISDTISILNLS 95 TD+GV A+ Q+ ++ + LN L D I + Sbjct: 78 TDAGVSAMGQLVSLRARSRGTRYTPPSPPPPAKDADELDYPSILNRAL--PDDIRVTGWC 135 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 VD+ F ARF R Y Y L LD E MR AA+ L G HDF Sbjct: 136 YVDEAFSARFDCEWRHYKYFFT--------------LHDGGLDLEKMRDAARRLEGEHDF 181 Query: 156 TTFRSIHCQA--SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 F + + + R ++ ++ G L I V +FL Q+R L LVG Sbjct: 182 RNFCKMDVKNVHNHARRILESASSSASGAPPRLCYISVKGTAFLWHQVRCVAAVLFLVGL 241 Query: 211 GKWTSTDLEKA--LQAQDRKECGPLAPPEGLYFD 242 GK + ++ L+ RK +AP E L Sbjct: 242 GKEPPSVIDDLLDLEKTTRKPQYEMAPEEPLLLW 275 >gi|195336235|ref|XP_002034747.1| GM14299 [Drosophila sechellia] gi|194127840|gb|EDW49883.1| GM14299 [Drosophila sechellia] Length = 499 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 52/281 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +SIQG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLERSRLDTNSIQGCLELALQVFHPTNEIHTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL DL R + IL LN L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERTNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRYD 120 Query: 107 AIRRSYLYRIITRQAPLA-----LEKGRAWLIP------------KSLDCENMRIAAQHL 149 A R+YLYR + P + IP S D + ++ A++ Sbjct: 121 ATGRTYLYRFAVAKDPPLGDCSLRNRSFETFIPIEEIDRCYFLQSSSFDIKRVQAASRMF 180 Query: 150 VGRHDFTTFRSIHCQASS------PIRTIDHFDVNSFG---------------NLIEIRV 188 +G HDF TF S+ Q S +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSNAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A+SFL+ Q+R VG+L +G+G+ L + L + Sbjct: 241 RAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTIPSKNS 281 >gi|195586672|ref|XP_002083097.1| GD13536 [Drosophila simulans] gi|194195106|gb|EDX08682.1| GD13536 [Drosophila simulans] Length = 499 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 117/281 (41%), Gaps = 52/281 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +SIQG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSIQGCLELALQVFHPTNEIHTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL DL R + IL LN L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERTNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRYD 120 Query: 107 AIRRSYLYRIITRQAPL----------------ALEKGRAWLIPKS-LDCENMRIAAQHL 149 A R+YLYR + P E R + + S D + ++ A++ Sbjct: 121 ATGRTYLYRFAVAKDPPLGDCSLRNRSFETFIPVEEIDRCYFLQSSSFDIKRVQAASRMF 180 Query: 150 VGRHDFTTFRSIHCQASS------PIRTIDHFDVNSFG---------------NLIEIRV 188 +G HDF TF S+ Q S +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSNAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A+SFL+ Q+R VG+L +G+G+ L + L + Sbjct: 241 RAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTIPSKNS 281 >gi|242003078|ref|XP_002422603.1| tRNA pseudouridine synthase A, putative [Pediculus humanus corporis] gi|212505404|gb|EEB09865.1| tRNA pseudouridine synthase A, putative [Pediculus humanus corporis] Length = 410 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 92/262 (35%), Gaps = 24/262 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---------VVVHGAGRTD 52 +++ YNGS Y G Q+ + +I+ + A+ + A RTD Sbjct: 74 RNVALLMAYNGSNYHGMQKNLDFKTIEYELLNALVKANLIPSEAIDNLPLIHFQRAARTD 133 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A +QV F + + + + + + I + ++ V K F+ + R+Y Sbjct: 134 KGVSAAKQVVSFKIAENFQVEKI------NMFLPEDIRVFSIKRVTKGFNCKNQCTARTY 187 Query: 113 LYRIITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIR 170 Y + T L + +G H F F + S R Sbjct: 188 SYTLPTFALAPEFHDEYPKNYRIDKLTIQKTNEILSQYLGTHPFHNFTSKKDGRDPSAKR 247 Query: 171 TIDHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 I F+ + I ++V +SF+ QIR VG V G + K + Sbjct: 248 YIMSFEAEEPFLENEEEFITLKVKGQSFMLHQIRKMVGYTIAVMKGFASEAIQSKIWTNE 307 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 P+AP GL + V Y Sbjct: 308 KVSL--PMAPGLGLVLEDVHYD 327 >gi|199559785|ref|NP_112597.3| tRNA pseudouridine synthase 3 [Homo sapiens] Length = 481 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I IL + V+ F Sbjct: 125 GQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEIIDELLN 304 >gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine synthase 3 [Nomascus leucogenys] Length = 481 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 100/282 (35%), Gaps = 54/282 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I IL + V+ F Sbjct: 125 GQVISLDLRSQFPRGRESEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 288 Query: 208 VGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 +G G +++ L + +K +A L ++ Sbjct: 289 IGQGMEKPELIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFE 330 >gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo] Length = 710 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 98/283 (34%), Gaps = 55/283 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRLVDSRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWV-------------------PVILCKALNAYLKISDTISILNLSIVDK 99 QV DL L + I +L + V+ Sbjct: 126 GQVISLDLRSNLSKEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPVEP 185 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS ++R+Y Y LD M+ AAQ VG HDF Sbjct: 186 DFSARFSCLKRTYRYFFPCA----------------DLDVALMQAAAQRYVGTHDFRNLC 229 Query: 160 SIH--CQASSPIRTIDHFDVNSFGN-----------LIEIRVVARSFLHTQIRSFVGSLK 206 + + RTI V L + V ++FL+ Q+R + L Sbjct: 230 KMDVANGVINFQRTILSAQVTWVDGGAEGGLRDPFRLCQFEVTGQAFLYHQVRCMMAILF 289 Query: 207 LVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L+G +++ L + RK +A L E+ Sbjct: 290 LIGQRMEGPEIIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFE 332 >gi|126302589|sp|Q9BZE2|PUS3_HUMAN RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens] gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens] Length = 481 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I IL + V+ F Sbjct: 125 GQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + LD M AAQ VG HDF + Sbjct: 185 SARFSCLERTYRY----------------FFPRADLDIVTMDYAAQKYVGTHDFRNLCKM 228 Query: 162 H--CQASSPIRTIDHF------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + RTI L + V ++FL+ Q+R + L L Sbjct: 229 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 288 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 289 IGQGMEKPEIIDELLN 304 >gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda melanoleuca] Length = 480 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 94/258 (36%), Gaps = 56/258 (21%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 64 VALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWV-------------------PVILCKALNAYLKISDTISILNLSIVDK 99 QV DL ++ + LN L I +L + V+ Sbjct: 124 GQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVL--PPDIRVLAWAPVEP 181 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R+Y Y + LD M AAQ VG HDF Sbjct: 182 SFSARFSCLERTYRY----------------FFPRADLDIVTMNYAAQKYVGTHDFRNLC 225 Query: 160 SIH--CQASSPIRTI------------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 + + RTI D L + V ++FL+ Q+R + L Sbjct: 226 KMDVANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAIL 285 Query: 206 KLVGDGKWTSTDLEKALQ 223 L+G G +++ L Sbjct: 286 FLIGQGMEKPEIIDELLN 303 >gi|195012378|ref|XP_001983613.1| GH25313, isoform A [Drosophila grimshawi] gi|193897095|gb|EDV95961.1| GH25313, isoform A [Drosophila grimshawi] Length = 496 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 114/283 (40%), Gaps = 55/283 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +SIQG +E A+ + + + + RT Sbjct: 1 MHRYLLNISYIGTNFRGIQKTINKLEEARLDTNSIQGCLELALRVFRPKNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + L LN L I IL+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERSDGKPYDTSTLTGVLNRTLDKHKLPIRILSSQRVVDTFHCRYH 120 Query: 107 AIRRSYLYRIITRQ------------------APLALEKGRAWLIP-KSLDCENMRIAAQ 147 A R+YLYR+ + E R + + + D E + AA+ Sbjct: 121 ATGRTYLYRVAVAKSVSEASKGSSLKNKGYESFVPVEEIDRCYFLHCDNFDVERLHGAAR 180 Query: 148 HLVGRHDFTTFRSIHCQASS-------PIRTIDHFDVN---------------SFGNLIE 185 +G HDF TF S+ Q S +R ID ++ + + Sbjct: 181 MFLGLHDFRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGQTLALGPNAKLATQTYDYWD 240 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 I + A+SFL+ Q+R VG+L + + + + + L + Sbjct: 241 IEIKAKSFLYKQVRRIVGTLLALANSRIDERCIYQMLTIPSKH 283 >gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus] gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus] gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus] Length = 479 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 94/256 (36%), Gaps = 52/256 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 64 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWV-----------------PVILCKALNAYLKISDTISILNLSIVDKQF 101 QV DL ++ + A + I +L + + F Sbjct: 124 GQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRVLAWAPAEPSF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y LD M AAQ VG HDF + Sbjct: 184 SARFSCLERTYRYFFPCA----------------DLDIATMNYAAQKYVGTHDFRNLCKM 227 Query: 162 H--CQASSPIRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKL 207 ++ RTI V + L + V+ ++FL+ Q+R + L L Sbjct: 228 DVANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCMMAILFL 287 Query: 208 VGDGKWTSTDLEKALQ 223 +G G +++ L Sbjct: 288 IGQGMEKPEIIDELLN 303 >gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca] Length = 479 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 94/258 (36%), Gaps = 56/258 (21%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 64 VALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWV-------------------PVILCKALNAYLKISDTISILNLSIVDK 99 QV DL ++ + LN L I +L + V+ Sbjct: 124 GQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVL--PPDIRVLAWAPVEP 181 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R+Y Y + LD M AAQ VG HDF Sbjct: 182 SFSARFSCLERTYRY----------------FFPRADLDIVTMNYAAQKYVGTHDFRNLC 225 Query: 160 SIH--CQASSPIRTI------------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 + + RTI D L + V ++FL+ Q+R + L Sbjct: 226 KMDVANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAIL 285 Query: 206 KLVGDGKWTSTDLEKALQ 223 L+G G +++ L Sbjct: 286 FLIGQGMEKPEIIDELLN 303 >gi|42561241|ref|NP_975692.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|62901321|sp|Q6MSQ4|TRUA_MYCMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42492739|emb|CAE77334.1| pseudouridylate synthase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 251 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 11/250 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQV 61 + + Y+GS Y GW Q N SIQ ++ KAI V TG+ + GA +TD+ VHAL Q Sbjct: 5 ILLSLCYDGSNYHGWINQTNAISIQTTLNKAIKKVIKTGQFKTI-GASKTDTNVHALDQK 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + KA+N L I IL+ VD F+ R + Y Y I Q Sbjct: 64 VLLIIYFTPILEKFIKAINKAL--PSDIKILDAKFVDPNFNIR-EVEYKIYHYYINDHQF 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS---PIRTIDHFDVN 178 + + + + +D ++ +G H+F F + + RTID V Sbjct: 121 DIFTNRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVL 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + I+ A F+ QIR + L + K ++T L + LQ K+ + + Sbjct: 181 RINNKVVIQFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLQG-IGKKTPFIIDAK 239 Query: 238 GLYFDSVEYS 247 GL ++++ Sbjct: 240 GLVLQKIQFN 249 >gi|195135260|ref|XP_002012052.1| GI24889, isoform A [Drosophila mojavensis] gi|193918316|gb|EDW17183.1| GI24889, isoform A [Drosophila mojavensis] Length = 499 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 118/287 (41%), Gaps = 58/287 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTRFRGIQKTINKLEESRVDTNSVQGCLELALRVFRPVNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + IL LN L S I +L+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERNDGKCYDTTILTGVLNRTLDKQSLPIRVLSTQRVADTFHCRYH 120 Query: 107 AIRRSYLYRIITRQAP---------------------LALEKGRAWLI-PKSLDCENMRI 144 AI R+YLYR+ + E R + + + D E + Sbjct: 121 AIGRTYLYRVAVSKQKTTVLPDAKSSSLRNRAFEAFLPVEEWDRCYFLQNNNFDIERLIA 180 Query: 145 AAQHLVGRHDFTTFRSIHCQASS-------PIRTIDHFDVN---------------SFGN 182 A++ L+G HD+ TF S+ Q S +R ID ++ + Sbjct: 181 ASRMLIGVHDYRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGRSLALGPNATLATENYD 240 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 +I + A+SFL+ Q+R VG+L + +G+ + + L + Sbjct: 241 YWDIEIKAKSFLYKQVRRIVGTLLALAEGRIDERCIYQMLTIPSKHS 287 >gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138] gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata] Length = 438 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 90/243 (37%), Gaps = 39/243 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK+ +I+G+I +A+ +T + GRTD G Sbjct: 88 IALRFAYLGWNYNGLAIQKDPTPLPTIEGTIIEALNKCKLVPSITPQEFEFSRCGRTDKG 147 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLK----------ISDTISILNLSIVDKQ-FHA 103 V A+ QV + N + + + D I I + + F A Sbjct: 148 VSAMNQVISLRVRSNLTDEEQKDPRNDHKEIQYVAILNQLLPDDIRISAVCLRPPNSFDA 207 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS R Y Y LD + M+ AA+ G HDF F + Sbjct: 208 RFSCEYRHYKYL----------------FHKDGLDLDRMQKAAKLYEGEHDFRNFCKLDG 251 Query: 163 -CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ RT+ ++ + + ++ +FL Q+R L LVG G T +EK Sbjct: 252 SKQITNYNRTMISANIKHVYNDFYCFDLIGSAFLWHQVRCMTAILFLVGQGLEEPTLIEK 311 Query: 221 ALQ 223 L Sbjct: 312 MLD 314 >gi|227497212|ref|ZP_03927460.1| pseudouridylate synthase [Actinomyces urogenitalis DSM 15434] gi|226833297|gb|EEH65680.1| pseudouridylate synthase [Actinomyces urogenitalis DSM 15434] Length = 229 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 12/171 (7%) Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIIT------RQAPLALEKGRAWLIPKSLDCEN 141 + + V F ARFSA+ R Y+YRI R+A +G+ + ++LD E+ Sbjct: 32 DVVLRGARRVPADFDARFSALERRYVYRIDDGAPSQGRRAYDPCRRGQVLWVGQALDVES 91 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-----FGNLIEIRVVARSFLHT 196 M ++A+ L+G HDF ++ + ++ IRT+ D L+ + VVA +F H+ Sbjct: 92 MALSARGLLGEHDFLSYCKPR-EGATTIRTLRRLDWQRASSGPDAGLVTLTVVADAFCHS 150 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +RS VG+ VG G+ + + L A+ R + P+APP GL + V Y Sbjct: 151 MVRSLVGAGLAVGQGRQPVSWPARLLAARSRDQAAPVAPPYGLTLEEVVYP 201 >gi|71665382|ref|XP_819661.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70884973|gb|EAN97810.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 429 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 105/263 (39%), Gaps = 36/263 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G +Q+ ++++ + A+ V + + GRTD GV Sbjct: 40 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 99 Query: 57 ALRQVAH-------FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL V + P C LN+ L TI I+ + VD F ARFS + Sbjct: 100 ALGNVFSLTVRASSWPTDSPQKPALDYCAMLNSAL--PVTIRIVGWAYVDDTFDARFSCV 157 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH----CQ 164 R+Y Y + + L+ E M AA L G H+F F Sbjct: 158 GRTYRY----------------YFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSN 201 Query: 165 ASSPIRTIDHFDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R++ F +F L+ + + A SFL+ QIR + L LVG G + + L+ Sbjct: 202 YERDVRSVGIFASEAFPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLE 261 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 DRK PLA L + Sbjct: 262 RGDRKPVYPLADGTPLVLWDCHF 284 >gi|296108989|ref|YP_003615938.1| tRNA pseudouridine synthase A [Methanocaldococcus infernus ME] gi|295433803|gb|ADG12974.1| tRNA pseudouridine synthase A [Methanocaldococcus infernus ME] Length = 258 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 98/243 (40%), Gaps = 31/243 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G Y +Q+Q + ++ + + + E +++ GRTD GV AL Sbjct: 2 YILKIAYDG-RYS-FQQQPHKETVCDKLLNTLEKLNFLEERKIIYSGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L +E + + L + I IL +++ ++ R Y Y + Sbjct: 60 VILKLKKEPILSYINHELKKF-----GIWILGYKEIEEIPKVQY----RHYRYIMPNLDY 110 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSF 180 + E MR A + L+G H F + SPIR I +N + Sbjct: 111 ----------------NLELMRKAGEKLIGEHSFHNLSKRDRSKEKSPIRKIYDIKINDY 154 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +E+ VV SFL +R VG L L+G + + ++K L + +E P EGL Sbjct: 155 GFFLEVDVVGESFLWQMVRKIVGLLHLIGREEKSLEWVDKILD-PNYREGVITFPAEGLI 213 Query: 241 FDS 243 Sbjct: 214 LVE 216 >gi|154341677|ref|XP_001566790.1| pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064115|emb|CAM40310.1| putative pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 499 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 36/264 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ V GRTD GV Sbjct: 60 RKIGLRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRVRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 ALRQ--------VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL D + P+ C LN L TI I+ ++VD +F ARFS + Sbjct: 120 ALGNAFSLTARASCTADADPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDRFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 R+Y Y + + L+ M+ AA +G H+F F + S+ Sbjct: 178 HRTYRY----------------YFCHRGLNLAAMQEAAAFFLGTHNFRNFCQMDVVNVSN 221 Query: 168 PIRTIDHFDVNSFGNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 RT+ ++ L E+ + A SFL+ QIR + L LVG G + ++ L+ Sbjct: 222 FTRTVLSVGLHPSEELPELISYLEITANSFLYHQIRCTMEVLFLVGRGLEAPSVVQTMLE 281 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 D K PLA L + Sbjct: 282 LGDCKPTYPLADGTPLILWDCAFD 305 >gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis] gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis] Length = 438 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 103/281 (36%), Gaps = 54/281 (19%) Query: 3 RY-CMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGV 55 RY + + Y G ++G+ + +++ I KA+ + + GRTD GV Sbjct: 102 RYVALKVMYFGQRFYGFSSEGQMDPTVESEIFKALERTRLLIGDKKEIQYSRCGRTDKGV 161 Query: 56 HALRQVAHFDLVREWV--------------------PVILCKALNAYLKISDTISILNLS 95 A+ QV L + + + LN L + I I+ Sbjct: 162 SAVGQVIALLLRSKVKDIDEIGKVFGETASQKHSEGEIDYVRVLNRVL--PNDIRIIGWC 219 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V F ARFS + R Y Y +G +L+ M A + +G HDF Sbjct: 220 PVPNDFSARFSCLSREYKY----------FFRG------DNLNLLAMESAGKKFIGEHDF 263 Query: 156 TTFRSIHC-QASSPIRTIDHFDVNSFGNLIE------IRVVARSFLHTQIRSFVGSLKLV 208 F + + R I F+++ E I++ +FL Q+R V L ++ Sbjct: 264 RNFCKMDAMNVHNYRRNITSFEISPCHERYEGNQLFAIKIRGSAFLWHQVRCMVAVLFMI 323 Query: 209 GDGKWTSTDLEKALQA--QDRKECGPLAPPEGLYFDSVEYS 247 G G + ++ L RK P+AP L S ++ Sbjct: 324 GQGLESPDVIDVLLDTVRTPRKPQYPMAPEIPLVLHSCDFE 364 >gi|118101846|ref|XP_417852.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 390 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 96/283 (33%), Gaps = 55/283 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + H GRTD GV A Sbjct: 68 VALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVSAF 127 Query: 59 RQVAHFDLVREWVPVI-------------------LCKALNAYLKISDTISILNLSIVDK 99 QV DL L + I +L + V+ Sbjct: 128 GQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPVEP 187 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS ++R+Y Y LD M AAQ VG HDF Sbjct: 188 DFSARFSCLKRTYRYFFPCA----------------DLDVALMHTAAQRYVGTHDFRNLC 231 Query: 160 SIH--CQASSPIRTIDHFDVNSFGN-----------LIEIRVVARSFLHTQIRSFVGSLK 206 + + RTI V L + V ++FL+ Q+R + L Sbjct: 232 KMDVANGVINFQRTILSAQVTWADGGAESGLRDPFRLCQFEVTGQAFLYHQVRCMMAILF 291 Query: 207 LVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L+G +++ L + RK +A L E+ Sbjct: 292 LIGQRMEGPEIIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFE 334 >gi|145590498|ref|YP_001152500.1| pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514] gi|166228752|sp|A4WHI1|TRUA_PYRAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145282266|gb|ABP49848.1| Pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514] Length = 257 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 100/247 (40%), Gaps = 36/247 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y I Y+G+ ++G+ N S++ + A+ + G RTD GV A+ Sbjct: 1 MP-YLYRIAYDGTLFYGFTGHPN--SLEPKLRAALGEILG------RGSRTDPGVSAVAN 51 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +N+ L + ++ V + F+ R A R YLY Sbjct: 52 VVMTSQRLHL------GYVNSKL--PRGVWAWGVAEVPEGFNPR-RAKARRYLYVAP--- 99 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS 179 D E MR AA LVG HD+++F ++P + T+ +V Sbjct: 100 -------------HWGEDVEAMREAAAVLVGTHDYSSFIKRRGDKATPTVTTVYKIEVEQ 146 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LI + V R F + IR ++ G G ++DL + ++ + R P AP EGL Sbjct: 147 RGGLIYMMFVGRGFRNKMIRKMAWAILATGRGVLKASDLRELVE-RPRPGAVPSAPAEGL 205 Query: 240 YFDSVEY 246 ++Y Sbjct: 206 VLLDIDY 212 >gi|331703685|ref|YP_004400372.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802240|emb|CBW54394.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 251 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 103/249 (41%), Gaps = 9/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N SIQ ++ KAI V GA +TD+ VHAL Q Sbjct: 5 ILLSLCYDGSNYHGWINQTNAISIQATLNKAIKKVIKTDQFKTIGASKTDTNVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + KA+N L I IL+ VD F+ R + Y Y I Q Sbjct: 65 LLIIYFTPILEKFIKAINKAL--PSDIKILDAKFVDSNFNIR-EVEYKIYHYYINDYQFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS---PIRTIDHFDVNS 179 + + + + +D ++ +G H+F F + + RTID V Sbjct: 122 IFTNRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I A F+ QIR + L + K ++T L + L+ K+ + +G Sbjct: 182 INNKVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLKG-IGKKTPFIIDAKG 240 Query: 239 LYFDSVEYS 247 L ++++ Sbjct: 241 LVLQKIQFN 249 >gi|281201760|gb|EFA75968.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500] Length = 531 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 34/274 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSG 54 + + Y+G+ Y G Q+ +I+ +EKAIF V G + RTD G Sbjct: 132 VAICVGYSGTNYRGMQKNPGFPTIEDELEKAIFKVGGISPDNMYCHRKIDWIRCARTDKG 191 Query: 55 VHALRQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V A+R + L + + A+NA L + I + + V+ FHA+ RRSY+ Sbjct: 192 VSAIRNMVSCKLEYDPPTLDEMKTAINAQL--PNDIRVFAIKRVNNTFHAKNCVDRRSYI 249 Query: 114 YRIITRQAPLALEKGRAWLI-PKSLDCENMRIAAQHLVGR---HDFTTFRSIHCQASSPI 169 Y T + L+ + + VG H++T+ S + Sbjct: 250 YITPTFAFEPIFANNKPAQYKFDELERTRLNSLLKLFVGTRKYHNYTS--KKESNDPSAV 307 Query: 170 RTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDG---------KWTS 215 RT++ F+ + L+ I +V +SF+ QIR +G + Sbjct: 308 RTVNSFECSEPFMNEGVELVAINIVGQSFMLHQIRKMIGVTMQFMRKGFFADSESDEAAL 367 Query: 216 TDLEKALQAQ--DRKECGPLAPPEGLYFDSVEYS 247 + ++K ++A R+ P+AP GL D Y Sbjct: 368 SKMKKLVEATFAHRQFNLPMAPGAGLLLDRCLYD 401 >gi|256384180|gb|ACU78750.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri str. GM12] gi|256385012|gb|ACU79581.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri str. GM12] gi|296455760|gb|ADH21995.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 251 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 9/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N SIQ ++ KAI V GA +TD+ VHAL Q Sbjct: 5 ILLSLCYDGSNYHGWINQTNAISIQTTLNKAIKKVIKTDQFKTIGASKTDTNVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + KA+N L I IL+ VD F+ R + Y Y I Sbjct: 65 LLIIYFTPILEKFIKAINKAL--PSDIKILDAKFVDPNFNIR-EVEYKIYHYYINDHHFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS---PIRTIDHFDVNS 179 + + + +D ++ +G H+F F + + RTID V Sbjct: 122 IFTNRYEYFWKHSKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I A F+ QIR + L + K ++T L + L+ K+ + +G Sbjct: 182 INNKVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLKG-IGKKTPFIIDAKG 240 Query: 239 LYFDSVEYS 247 L ++++ Sbjct: 241 LVLQKIQFN 249 >gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] Length = 426 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 97/261 (37%), Gaps = 32/261 (12%) Query: 4 YCMIIEYNGSGYFG--WQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 + Y G Y G +Q + +++G + +A+ GRTD GV Sbjct: 74 IALRFAYLGWNYNGLAFQTEPTPLPTVEGKLFEALMRAHLIKDPSTCSFSRCGRTDKGVS 133 Query: 57 ALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLY 114 A+ QV ++ E P+ C LN L + I ++ S + F ARFS +RR Y Y Sbjct: 134 AMGQVVSLNVRYSEERPIAYCDVLNRLL--PEDIRVIAYSPNPPEGFDARFSCVRRHYKY 191 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTI 172 K LD E M AA +G HDF F I Q ++ R I Sbjct: 192 ---------LFLKQYPG---GELDIERMSQAAALYLGEHDFRNFCKIDASKQITNYNRGI 239 Query: 173 DH---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 H V+ L + +FL Q+R + L LVG + + L ++ Sbjct: 240 LHSKIICVDPQKQLYAFDLQGTAFLWHQVRCMMAILFLVGQHLEPVDIVSELLNV-EKNP 298 Query: 230 CGP---LAPPEGLYFDSVEYS 247 C P +A L + Sbjct: 299 CKPVYDMASDLPLVLYDCVFD 319 >gi|71663014|ref|XP_818505.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70883761|gb|EAN96654.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 409 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 36/263 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G +Q+ ++++ + A+ V + + GRTD GV Sbjct: 20 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 79 Query: 57 ALRQVAHFDLVR--------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL V + + P+ C LN+ L TI I+ + VD F ARFS + Sbjct: 80 ALGNVFSLTVRASSWPTDSPQKPPLDYCAMLNSAL--PVTIRIVGWAYVDDTFDARFSCV 137 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH----CQ 164 R+Y Y + + L+ E M AA L G H+F F Sbjct: 138 GRTYRY----------------YFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSN 181 Query: 165 ASSPIRTIDHFDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R++ F +F L+ + + A SFL+ QIR + L LVG G + + L+ Sbjct: 182 YERDVRSVGIFASEAFPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLE 241 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 DRK PLA L + Sbjct: 242 RGDRKPVYPLADGTPLLLWDCHF 264 >gi|260220773|emb|CBA28673.1| tRNA pseudouridine synthase A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 192 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 84/172 (48%) Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK 135 ++ +++ + FH R SAI R Y Y ++ ++E GR Sbjct: 5 ARSFRRHVQRPGIPGLAKXXXXXXXFHCRASAISRRYAYVLLESPIRPSVETGRVGWTFN 64 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 +LD +MR AA +L+G HDFT+FR+ CQA SP++ + D + G I A +FLH Sbjct: 65 NLDEMSMRKAADYLIGEHDFTSFRAAQCQALSPVKNVMRIDFHKRGAYWRIEFEANAFLH 124 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 IR+ +G L +G K +E+ L A+ RK P P+GLYF Y Sbjct: 125 HMIRNIMGCLVQIGQRKKPPEWMEEVLAARSRKVAAPTFSPDGLYFLGPRYD 176 >gi|149580877|ref|XP_001519338.1| PREDICTED: similar to FKSG32 [Ornithorhynchus anatinus] Length = 695 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 99/282 (35%), Gaps = 56/282 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + H GRTD GV A Sbjct: 63 VALRIAYLGWGYQGFASQENTNNTIEERLFEALTKTRLIERRQTANYHRCGRTDKGVSAF 122 Query: 59 RQVAHF------------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 QV + + LN L I +L + V Sbjct: 123 GQVISLDLRSQTVRGGQEEEGSKDRMDARTAEIRYTHILNRVL--PPDIRVLAWAPVGSG 180 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARF+ ++R+Y Y + LD E M AAQ VG HDF Sbjct: 181 FSARFNCLQRTYRY----------------FFPRADLDLEAMDRAAQKYVGTHDFRNLCK 224 Query: 161 IH--CQASSPIRTIDHFDVNSFGN-----------LIEIRVVARSFLHTQIRSFVGSLKL 207 + +S RTI V L + V ++FL+ Q+R + L L Sbjct: 225 MDVANGVTSFQRTILSAQVRRVDQSEETDRRDPFRLCQFEVTGQAFLYHQVRCMMAILFL 284 Query: 208 VGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 VG +++ L + RK +A L ++ Sbjct: 285 VGQRMEGPEVIDELLDVEKNPRKPQYSMAVELPLVLYDCQFE 326 >gi|320094548|ref|ZP_08026315.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] gi|319978528|gb|EFW10104.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] Length = 218 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 5/196 (2%) Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 + AL + A+ L R W + +SD + +L+ S V F ARFSA RSY Sbjct: 3 ACAAALVRRANALLARAWAQREQGRGERPPRGVSDAL-VLSASPVSADFDARFSATGRSY 61 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YRI R P L + + LD + AA+ L+G HDF +F + ++ IR + Sbjct: 62 VYRIADRPTP--LRRWDCVWDDRPLDLAAVNRAAEALLGEHDFLSFCRPR-EGATTIRAL 118 Query: 173 DHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + L+E V A +F H+ +RS VG+L LVG G + L A+ R Sbjct: 119 TRLEAVRAPDGLVEFHVGADAFCHSMVRSLVGALALVGRGARPAPWPRALLDARSRASAA 178 Query: 232 PLAPPEGLYFDSVEYS 247 P+AP GL + V+Y Sbjct: 179 PIAPARGLTLERVDYP 194 >gi|302802211|ref|XP_002982861.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii] gi|300149451|gb|EFJ16106.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii] Length = 289 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 103/270 (38%), Gaps = 43/270 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------------EIVVVHGAGR 50 + +++ Y+G+ + GWQ+Q ++Q +EK + + +V AGR Sbjct: 14 FKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQGKIKEALVSVAGR 73 Query: 51 TDSGVHALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GVHA QV F RE + A+N+ + + ++ S V++ FH FSA Sbjct: 74 TDKGVHACGQVCSFYTWMRECKEEDVKSAVNSAM--PTILRAVSASEVNRDFHPIFSAKW 131 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT--FRS----IHC 163 R Y+Y R +D + + L G H + F Sbjct: 132 RRYIYIFPLR-------------SRDEIDVSKVATLLRGLEG-HSLSYAIFARDTKIARS 177 Query: 164 QASSPIRTIDHFD-------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + + T+ H V + N++ + +VA FL +R V + Sbjct: 178 SGPATVCTLYHARAALAKLPVPNEENVMVVELVADRFLRKMVRVLVSTAIKEAFAGANDD 237 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L ++ DR+ P AP GL V Y Sbjct: 238 ALVALMEETDRRASAPPAPAHGLCLAEVGY 267 >gi|88802196|ref|ZP_01117723.1| pseudouridylate synthase I [Polaribacter irgensii 23-P] gi|88781054|gb|EAR12232.1| pseudouridylate synthase I [Polaribacter irgensii 23-P] Length = 260 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 13/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + +E+ G + GWQ+Q N ++ ++K++ F+ G GRTD+ V A Sbjct: 7 YLIRLEFLGFRFSGWQKQLNAKTVHDIVDKSLSFVFEDSAYKTIGVGRTDAKVSANAYYF 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 E V +LN+ + + V ++ ++ R+ Y Y Sbjct: 67 QLFRDSEIKEVSFLASLNSN--FPPDFRAITVQEVGTDYNVIQASKRKEYHYYFSFGAKN 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-- 180 + LD + M AA+ G H F + + + R ID ++ Sbjct: 125 HPFAAPFLVNVAADLDLKKMMDAARLFEGEHYFHKYCTKPSAQTVFKRVIDVCEIVENTI 184 Query: 181 -------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-QAQDRKECGP 232 +RV + FL QIR + +L VG G +T + +L + DRK Sbjct: 185 LTASFFPEKSYMLRVQGKGFLRYQIRLMMATLFEVGKGTLDATFIIASLKEDNDRKFMRN 244 Query: 233 LAPPEGLYFDSVE 245 +AP GL +E Sbjct: 245 IAPSSGLQLYDIE 257 >gi|322823466|gb|EFZ29213.1| hypothetical protein TCSYLVIO_4538 [Trypanosoma cruzi] Length = 409 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 104/263 (39%), Gaps = 36/263 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G +Q+ ++++ + A+ V + + GRTD GV Sbjct: 20 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 79 Query: 57 ALRQVAH-------FDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 AL V + P C LN+ L TI I+ + VD F ARFS + Sbjct: 80 ALGNVFSLTVRASSWPTDSPQKPALDYCAMLNSAL--PVTIRIVGWAYVDDTFDARFSCV 137 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH----CQ 164 R+Y Y + + L+ E M AA L G H+F F Sbjct: 138 GRTYRY----------------YFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSN 181 Query: 165 ASSPIRTIDHFDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R++ F + L+ + + A SFL+ QIR + L LVG G + + L+ Sbjct: 182 YERDVRSVGIFASEALPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLE 241 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 DRK PLA L + Sbjct: 242 RGDRKPVYPLADGTPLVLWDCHF 264 >gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM 70294] gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM 70294] Length = 446 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 97/269 (36%), Gaps = 41/269 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G I +A+ + + GRTD G Sbjct: 97 IALKFAYLGWNYNGLAIQKEPTPLPTVEGVILEAMNKCRLVPSMNPQDYKFSRCGRTDKG 156 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV + P + N + D I + + K F A Sbjct: 157 VSAMSQVISLKVRSNLTPEEQANSDNDSKEIQYVDILNQLLPDDIRVSAVCLRPPKDFDA 216 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS R Y Y + LD E M AA++ G +DF F + Sbjct: 217 RFSCKHRHYKYL----------------FNKEGLDLEKMEQAAKYYEGENDFRNFCKLDG 260 Query: 163 -CQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ RTI + + G+ ++ +FL Q+R + +L LVG G T ++ Sbjct: 261 SKQITNYKRTIISASIMHVSGDFYCFDLIGSAFLWHQVRCMMANLFLVGQGLEDHTLIKD 320 Query: 221 AL--QAQDRKECGPLAPPEGLYFDSVEYS 247 L + RK +A L ++ Sbjct: 321 MLDIEKTPRKPIYDMASDVPLILYDCKFE 349 >gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 257 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 92/264 (34%), Gaps = 40/264 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLV--------TGEIVVVHGA 48 + + + Y G Y G+ Q +++ ++ A+ ++ Sbjct: 11 RKIALHVCYLGWDYHGFASQGAANAAAPRTVEQALFDALAKTKLVESARDVFKVADYARC 70 Query: 49 GRTDSGVHALRQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 GRTD GV L Q+ + LN L + + L + VD + +A Sbjct: 71 GRTDRGVSGLGQIVTLRARSNGAEGVDEELDYVALLNRAL--PNDVRALGWAPVDDELNA 128 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 RF R Y Y LD MR AA+ G HDF F + Sbjct: 129 RFDCEWRQYKYFFEKTNG---------------LDLGAMREAARAFEGVHDFRNFCRMDA 173 Query: 164 Q-ASSPIRTIDHFDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + S R + + G L+ I V +FL Q+R L +VG G + T + + Sbjct: 174 ENVKSFTRNVLECTIEESHDGKLMYINVRGTAFLWHQVRCMASVLFMVGLGHESPTVVTE 233 Query: 221 A--LQAQDRKECGPLAPPEGLYFD 242 L+ RK P+AP L Sbjct: 234 LLDLERTPRKPQYPMAPEHALLLW 257 >gi|149184026|ref|ZP_01862387.1| tRNA pseudouridine synthase A [Bacillus sp. SG-1] gi|148848263|gb|EDL62552.1| tRNA pseudouridine synthase A [Bacillus sp. SG-1] Length = 150 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 11 MQRIKCTVAYDGSPFAGYQVQPGKRTVQLEIEKALSAIHKGDQVKITASGRTDAGVHAKG 70 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD LN+ L I + + V++ FHARFSA+++ Y Y + Sbjct: 71 QVFHFDTGLSIPEEKWPTVLNSKL--PPEIVVTSAEEVEEGFHARFSAVKKEYRYSVYQT 128 Query: 120 QAPLALEKGRAWLIPKSLDCE 140 + ++ A P L+ E Sbjct: 129 KTADPFKRDFALHYPFPLNIE 149 >gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Pichia pastoris CBS 7435] Length = 422 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 86/271 (31%), Gaps = 43/271 (15%) Query: 4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G Q+ + +I+ I +A+ + GRTD G Sbjct: 50 IALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRTDKG 109 Query: 55 VHALRQVAHFDLVREWVPVIL---------CKALN-AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV ++ P L +N + I I + K F A Sbjct: 110 VSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGVCLRPPKGFDA 169 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS R Y Y + LD E+M+ AA G HDF F + Sbjct: 170 RFSCRGRHYKYV----------------FQDEGLDLESMKKAAPMFEGVHDFRNFCKVDG 213 Query: 163 ----CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + +R+ + + +FL Q+R V L ++G G + + Sbjct: 214 AKQMTNYTRAVRSSQILPLEGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIV 273 Query: 219 EKALQAQDRKECGPLAPPE--GLYFDSVEYS 247 K L Q + L Y Sbjct: 274 SKLLDIQSHPQKPVYVMAHDIPLVLYDCIYD 304 >gi|320582058|gb|EFW96276.1| Non-essential tRNA:pseudouridine synthase [Pichia angusta DL-1] Length = 404 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 94/273 (34%), Gaps = 43/273 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFL------VTGEIVVVHGAGRTD 52 R + Y G Y G Q N +++ I KA+ + GRTD Sbjct: 58 RRIALKFSYLGWNYHGLAYQNDTSNIPTVELFILKALEKTKLIRNLDPTDCDFSRCGRTD 117 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLSIVDKQ-F 101 GV A+ QV + + LN + + I I ++ + + F Sbjct: 118 KGVSAMNQVISLVVRSNLTQDEMANPLNDVKELDYVKILNKVLPEDIRIHSICLRPPEGF 177 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R Y Y +L+ E M+ AA + VG DF F + Sbjct: 178 DARFSCLSRHYKYFFEQA----------------NLNIEKMQQAASYFVGEQDFRNFCKV 221 Query: 162 H--CQASSPIRTIDHFDVNS--FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 Q + R I + FG+ + +FL Q+RS + L LVG Sbjct: 222 DGSKQIVNYKRKIISSSIERTKFGHKTYVFSLRGSAFLWHQVRSMMSILFLVGQELEEPE 281 Query: 217 DLEKALQAQ--DRKECGPLAPPEGLYFDSVEYS 247 + K L + + +A P L E+ Sbjct: 282 IVRKLLDVKLFPGRPNYTIASPLPLVLYDCEFD 314 >gi|332862130|ref|XP_513709.3| PREDICTED: pseudouridylate synthase-like 1 [Pan troglodytes] Length = 261 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 15/191 (7%) Query: 3 RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + +Q +E+A + E V + RTD+GVHAL Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + P +L +ALN +L+ I +L V FHAR++A R+YL Sbjct: 73 SNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHP-AIRVLRAFRVPSDFHARYAATSRTYL 131 Query: 114 YRIITRQAP----LALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T E+ W +P LD M+ AAQHL+G HDF+ F+S SP Sbjct: 132 YRLATGCHRRDELPVFERNLCWTLPADCLDVVAMQEAAQHLLGTHDFSAFQSAGSPVPSP 191 Query: 169 IRTIDHFDVNS 179 +RT+ V+ Sbjct: 192 VRTLRRVSVSP 202 >gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Pichia pastoris GS115] gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Pichia pastoris GS115] Length = 438 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 86/271 (31%), Gaps = 43/271 (15%) Query: 4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G Q+ + +I+ I +A+ + GRTD G Sbjct: 66 IALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRTDKG 125 Query: 55 VHALRQVAHFDLVREWVPVIL---------CKALN-AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV ++ P L +N + I I + K F A Sbjct: 126 VSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGVCLRPPKGFDA 185 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS R Y Y + LD E+M+ AA G HDF F + Sbjct: 186 RFSCRGRHYKYV----------------FQDEGLDLESMKKAAPMFEGVHDFRNFCKVDG 229 Query: 163 ----CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + +R+ + + +FL Q+R V L ++G G + + Sbjct: 230 AKQMTNYTRAVRSSQILPLEGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIV 289 Query: 219 EKALQAQDRKECGPLAPPE--GLYFDSVEYS 247 K L Q + L Y Sbjct: 290 SKLLDIQSHPQKPVYVMAHDIPLVLYDCIYD 320 >gi|242001376|ref|XP_002435331.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215498661|gb|EEC08155.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 442 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 19/260 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVVV------HGAGRTDS 53 + + + YNG Y G QR +I+ + +A++ + E V V A RTD Sbjct: 72 KMALCMSYNGKDYLGMQRNPGTKTIEDDLLQAMYKGDLILKEHVDVPQAMKFQRAARTDK 131 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+RQ+ L + +N++L D I ++++ + F+ + S R+Y Sbjct: 132 GVSAVRQIVSLKLPTNLTVEEMVDKINSHLV--DQIRVIDIKRTTRGFNCKNSCDSRTYT 189 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTI 172 Y + T + G H++ F S + S +R I Sbjct: 190 YVLPTFAFAPPESPAEESYRITEERIGEVNNVLALYKGCHNYHNFTSGKKSEDPSAMRYI 249 Query: 173 DHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + V +++++ +SF+ QIR VG + + G T + +A + Sbjct: 250 ISAECAQPFVQGDQEFVQVQIKGQSFMLHQIRKMVGLVIAIMRGCTKETTIRRAWGPEKL 309 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P+AP GL + V Y Sbjct: 310 DL--PIAPALGLMLEEVHYD 327 >gi|328873128|gb|EGG21495.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum] Length = 510 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 101/300 (33%), Gaps = 79/300 (26%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+ +I+G + A+ + +GRTD GV A Sbjct: 93 VALKVAYLGWHYHGFAAQQCTEETIEGHLFSALQKTCLIRDIKECNYTKSGRTDKGVSAF 152 Query: 59 RQVAHFDLVREW------------------------------------VPVILCKALNAY 82 QV + + + LN Sbjct: 153 GQVISLYVRSNLKQGDGIIPPVIPDDDNKNQQQKNKNNNKKNNNHVTPIEYPYVRMLNGV 212 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 L I +L + V F+ARFS + R+Y Y + P LD E M Sbjct: 213 L--PPYIRVLAWTPVPFHFNARFSTLYRTYKY----------------YFNPAGLDIEAM 254 Query: 143 RIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDV-------NSFGNLIEIRVVARSFL 194 + A H +G HDF+ F I +A S R I FD+ G L E + +FL Sbjct: 255 KEAGNHFLGSHDFSNFCKIDLEAVKSFTRVILSFDIAPVPVGQFQSGGLYEATICGYAFL 314 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE-------GLYFDSVEYS 247 QIR + L L+G K+ +T ++ L +A P L Y Sbjct: 315 WHQIRCMMAMLLLIGQKKFPTTIIKDLLDT-----SSAIAKPSYEMASEIPLVLYDCGYE 369 >gi|325969586|ref|YP_004245778.1| tRNA-pseudouridine synthase I [Vulcanisaeta moutnovskia 768-28] gi|323708789|gb|ADY02276.1| tRNA-pseudouridine synthase I [Vulcanisaeta moutnovskia 768-28] Length = 272 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 26/246 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+GS + G+ +SI+ + +AI + + A RTD GV A+ Sbjct: 1 MPTMAFKVLYDGSLFSGFT--GGTNSIEYYLRRAI-RYFIKDFGLSKASRTDPGVSAVGN 57 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V ++ LN+ L + I + + V FHAR +A+ R+Y+Y + Sbjct: 58 VISIKYDDGI--RLMPGMLNSRL--PNGIRVWAWAEVSDDFHAR-AAVSRTYVYVMP--- 109 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 WL D + MR A + VG HD + F+ + + I +V Sbjct: 110 ----------WLYE---DVDLMRRATELFVGVHDLSNFQVKERGVPTTVM-ISSVNVERL 155 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +V + F + IR V ++++VG T +L ++ + R+ P A P GL Sbjct: 156 GDYLVFTIVGKGFRNKMIRKIVNAIRMVGISNLTLDELRDLIELRVRRPI-PPASPYGLL 214 Query: 241 FDSVEY 246 SV Y Sbjct: 215 LLSVSY 220 >gi|312093536|ref|XP_003147717.1| hypothetical protein LOAG_12156 [Loa loa] gi|307757118|gb|EFO16352.1| hypothetical protein LOAG_12156 [Loa loa] Length = 414 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 69/294 (23%), Positives = 105/294 (35%), Gaps = 66/294 (22%) Query: 2 IRYCMIIEYNGSGYFGW-QRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R ++ Y G Y G ++Q+ +I+ + KA+ + E + GRTD GV Sbjct: 32 RRIALMFMYFGWEYNGLVEQQEIAGTIEEEMRKALMKTKLVESWENCGWNRCGRTDKGVS 91 Query: 57 ALRQVAHFDLVREWVP---------------------VILCKALNAYLKISDTISILNLS 95 A +QVA + + K LN+ L I +L + Sbjct: 92 AFKQVASLIVRSNEPEGEGVFWPAIAHTSSETAVKGELQYVKMLNSTL--PTNIRVLAWA 149 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V + F AR+ +R+Y Y A + + D E MR A Q LVG HDF Sbjct: 150 PVPENFSARYRCTQRTYTY---------AFPRA-------NFDIEAMRQACQFLVGEHDF 193 Query: 156 TTFRSIHCQAS----SPIRTIDHFDVN----------------SFGNLIEIRVVARSFLH 195 F I + IRTI + D++ + +++ V FL Sbjct: 194 RNFCRIDMNKGRVEMNYIRTISYADISLISNNSLLASKQSDEVTHYEFLQLTVKGSGFLW 253 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEYS 247 QIR + L +G G + + L + K LAP L Y Sbjct: 254 HQIRCIMALLCEIGLGNEKPEVISELLDIKLTPSKPIYGLAPAFPLCLFDCVYD 307 >gi|317501503|ref|ZP_07959701.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088022|ref|ZP_08336944.1| hypothetical protein HMPREF1025_00527 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897132|gb|EFV19205.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409170|gb|EGG88625.1| hypothetical protein HMPREF1025_00527 [Lachnospiraceae bacterium 3_1_46FAA] Length = 252 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 101/260 (38%), Gaps = 34/260 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + ++Y+G+ Y GW R +I I + +TGE + + +T GVHA Sbjct: 1 MPNIKLTLQYDGTRYLGWTRPAADGYAKTISYRISSVLQKMTGEDITLFAGAKTAPGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L Q +F + LN YL I IL+ IV +F + +A+ R+YLYRI Sbjct: 61 LCQTVNFHTESPFSDTYFLSKLNEYL--PKDIHILSSEIVSDRFRSDLNAVSRTYLYRIC 118 Query: 118 TRQAPLALEKGRAWLIPKSL---DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 T + IP+ + + +R AA LVG HDF + + + + I Sbjct: 119 TAPVQNIFTRAYTANIPEIISESEVAAIRKAADSLVGVHDFRSLSGVKKKKGTVK-EIFD 177 Query: 175 FDVNSFGN-------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 V+ L+ I++ A FL+ + L G K + R Sbjct: 178 ISVSHSKETENDSFSLLTIKICANDFLYLMPEHIIEFLIKKGVDK------------EVR 225 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P GL S+ Y Sbjct: 226 CN------PAGLLLHSITYP 239 >gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis] Length = 444 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 101/271 (37%), Gaps = 45/271 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 Y G Y G QK+ +++G+I + + + + GRTD G Sbjct: 98 VAFKFAYLGWNYNGLAIQKDATPLPTVEGTILETMNKCKLVPSMVPQEYKFSRCGRTDRG 157 Query: 55 VHALRQVAHFDLVREWVPV------------ILCKALNAYLKISDTISILNLS-IVDKQF 101 V A+ QV + LN L + I + + K F Sbjct: 158 VSAMNQVISLRVRSNLTAEEQLDPSYDDKEIQYVNILNQIL--PEDIRVSAVCLRPPKGF 215 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS R Y Y + + LD E M++AA+H G HDF F + Sbjct: 216 DARFSCKSRHYKYLFSS----------------EGLDLERMQLAAKHYEGEHDFRNFCKL 259 Query: 162 H--CQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 Q ++ RTI ++ + ++ +V +FL Q+R V +L LVG G + Sbjct: 260 DGSKQITNYKRTIKSSNIMHVSEDMYCFDLVGSAFLWHQVRCMVANLFLVGQGLEDPNLI 319 Query: 219 EKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 ++ L + RK +A L E+S Sbjct: 320 KEMLDIEKMPRKPIYEMASDIPLILYECEFS 350 >gi|302818580|ref|XP_002990963.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii] gi|300141294|gb|EFJ08007.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii] Length = 289 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 17/257 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------------EIVVVHGAGR 50 + +++ Y+G+ + GWQ+Q ++Q +EK + + +V AGR Sbjct: 14 FKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQGKIKEALVSVAGR 73 Query: 51 TDSGVHALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GVHA QV F RE + A+N+ + + ++ S V++ FH FSA Sbjct: 74 TDKGVHACGQVCSFYTWMRECKEEDVKSAVNSAM--PTILRAVSASEVNRDFHPIFSAKW 131 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y+Y R + ++ + + ++L+ ++ A + ++ + C Sbjct: 132 RRYIYIFPLR-SRDEIDVSKVATLLRALEGHSLSYAIFARDTKIARSSGPATVCTLYHAR 190 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + N++ + +VA FL +R V + L ++ DR+ Sbjct: 191 AALAKLPFPNEENVMVVELVADRFLRKMVRVLVSTAIKEAFAGANDDALVALMEETDRRA 250 Query: 230 CGPLAPPEGLYFDSVEY 246 P AP GL V Y Sbjct: 251 SAPPAPAHGLCLAEVGY 267 >gi|83320035|ref|YP_424629.1| tRNA pseudouridine synthase A [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123753714|sp|Q2SRI4|TRUA_MYCCT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83283921|gb|ABC01853.1| tRNA pseudouridine synthase A, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 249 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 94/248 (37%), Gaps = 9/248 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N S Q + KAI V GA +TD+ VHAL Q Sbjct: 5 ILLTLCYDGSNYHGWINQTNSISTQTVLNKAIKKVIKTSEFKTIGASKTDANVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + A+N L + I ILN VD F+ R + Y Y I + Sbjct: 65 LLIIYFTPILEKFINAINKAL--PEDIRILNAKFVDPNFNIR-EVDYKIYNYYINDHKFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH---CQASSPIRTIDHFDVNS 179 + + + +D ++ +G H+F F + R ID V Sbjct: 122 IFTNRYEYFWKHSKIDILKLQEIFNLFIGEHEFKLFSGLKENEWDNYQTKRIIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG-KWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I+ A F+ QIR + + K L + LQ K+ + +G Sbjct: 182 INNKVVIQFKATGFIRYQIRIIIANCLNAYLNYKVNINTLTEMLQG-IGKKTPFIIKAKG 240 Query: 239 LYFDSVEY 246 L +++ Sbjct: 241 LVLQEIKF 248 >gi|119872780|ref|YP_930787.1| tRNA pseudouridine synthase ACD [Pyrobaculum islandicum DSM 4184] gi|166228754|sp|A1RU12|TRUA_PYRIL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119674188|gb|ABL88444.1| Pseudouridylate synthase [Pyrobaculum islandicum DSM 4184] Length = 255 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 35/247 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y I Y+G+ ++G+ + S +E A+ V GEI + RTD GV A+ Sbjct: 1 MP-YLYRIAYDGTLFYGFT--GHSRS----LEPALKRVFGEI--LGRGSRTDPGVSAVAN 51 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +P+ L + K+ + ++ V + F+ R A R YLY Sbjct: 52 TVMV---SQKLPIALVNS-----KLPRGVWAWAIAEVPQSFNPR-RAKFRHYLYVAP--- 99 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 D +M AA+ L G HDF +F + S I T+ V Sbjct: 100 -------------HWGEDLGSMHEAAEVLAGTHDFASFIQRRGEKISTIATVMEIKVELR 146 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI + V R F + IR ++ G G + D+ + L+ + R P AP EGL Sbjct: 147 GDLIYMHFVGRGFKNKMIRKLAWAILAAGRGIFNIRDIRELLE-RPRPGVVPSAPAEGLV 205 Query: 241 FDSVEYS 247 ++EY Sbjct: 206 LLNIEYD 212 >gi|255088059|ref|XP_002505952.1| predicted protein [Micromonas sp. RCC299] gi|226521223|gb|ACO67210.1| predicted protein [Micromonas sp. RCC299] Length = 290 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 92/281 (32%), Gaps = 54/281 (19%) Query: 4 YCMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTD 52 + + Y G Y G+ Q +++ ++ +A+ V T + GRTD Sbjct: 15 VALHVMYAGWDYRGFASQGAERDGVRTVEEALFRALKRVRLIAPDATWKTCDYTRCGRTD 74 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLK--------------------ISDTISIL 92 +GV AL QV L R VP + L + I IL Sbjct: 75 AGVSALGQVVSARL-RCRVPRRDDDDDDDDLSETGRLHEGDEIDYPAVLNRALPRDIRIL 133 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + V F ARF R Y Y LD M AA VG Sbjct: 134 GWTYVPPAFSARFDCDYRHYKYFFTDWNG---------------LDVRAMNEAASAFVGE 178 Query: 153 HDFTTFRSIH-CQASSPIRTIDHFDVN----SFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 HDF F + + R ID V + I VV +FL Q+R L L Sbjct: 179 HDFRNFCKMDARNVHNYRRRIDSCRVVLAAGEPPGVAHIEVVGTAFLWHQVRCIASVLFL 238 Query: 208 VGDGKWTSTDLEKA--LQAQDRKECGPLAPPEGLYFDSVEY 246 VG G+ + L RK +AP E L + Sbjct: 239 VGLGREPPGVVAHMLDLARCPRKPQYEMAPEEPLLLWRCGF 279 >gi|149237835|ref|XP_001524794.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL YB-4239] gi|146451391|gb|EDK45647.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL YB-4239] Length = 491 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 93/249 (37%), Gaps = 43/249 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M + Y G Y G Q + +++ I KA+ V E V GRTD Sbjct: 128 MRFVAIKFAYLGWNYNGLAFQNDPTPLPTVEEIILKALAKVKLIREPIEEVEYSKCGRTD 187 Query: 53 SGVHALRQVAHFDLVREWVPVILCK------------ALNAYLKISDTISILNLS-IVDK 99 GV A+ QV L P +NA L I + + + Sbjct: 188 KGVSAMNQVISIKLRSNLTPQEQQDPAFDAKEVDYFTVINANL--PADIKVHAICLRPPE 245 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS R Y Y L + + +LD + M AA++ G HDF F Sbjct: 246 NFDARFSCKERHYRY----------LFRKTS-----TLDIDLMAQAAEYYEGLHDFRNFC 290 Query: 160 SIH--CQASSPIRTIDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + Q +S +R I + +S GNL ++ +FL Q+R V L LVG + Sbjct: 291 KLDGSKQLTSFVRDIRRSKIIPLDSDGNLYCFDLIGNAFLWHQVRCMVAILFLVGQKLES 350 Query: 215 STDLEKALQ 223 ++ + Sbjct: 351 PEIVKDLMD 359 >gi|221115363|ref|XP_002163885.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 446 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 97/280 (34%), Gaps = 43/280 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--------------TGEIVVVHG 47 + +++ Y G+ Y G Q+ + +I+ + A+ + + Sbjct: 90 RKVALLLAYCGANYSGMQKNPDVETIEEKLLDALCEMKAIRAEHKHEFLVNNVNQISFQR 149 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A RTD GV A RQ + + +N L D I + L V K F+A+ Sbjct: 150 AARTDKGVSAARQTVSLKITSN----TFLEDVNKLL--PDDIRVFGLERVTKSFNAKCCC 203 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSL-------------DCENMRIAAQHLVGRHD 154 R+Y Y + + + + + + + G H+ Sbjct: 204 SGRAYEYLVPSFAFAPSNDVNFFVFVYRFFLHHIGFQKFISDEQFAKLNRLFSCYEGTHN 263 Query: 155 FTTFRSIHC-QASSPIRTIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 F F S S R I F N I I + +SF+ QIR +G + V Sbjct: 264 FHNFTSGKPFSDQSANRYIISFKANKPFECQGHEFIAIEISGQSFMIHQIRKMIGLVIAV 323 Query: 209 GDGKWTSTDLEKA-LQAQDRKECGPLAPPEGLYFDSVEYS 247 G +EK+ LQA+ P AP GL V Y+ Sbjct: 324 CRGHCPEDTIEKSWLQAK---ADIPKAPGLGLLLCKVFYN 360 >gi|322792295|gb|EFZ16279.1| hypothetical protein SINV_03177 [Solenopsis invicta] Length = 290 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 112/269 (41%), Gaps = 37/269 (13%) Query: 16 FGWQRQ------KNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHALRQVAHFDL 66 G QRQ ++ SIQG+IE A+ V+ + V+ + RTD+GVHA AH +L Sbjct: 1 RGLQRQSSDNFVRDTDSIQGAIETALLTVSPKSLIRPVLTLSSRTDAGVHAFGNTAHVEL 60 Query: 67 VREWVPV----ILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYR-----I 116 ++ + + K +N Y K I +L+ + + FHAR S R+YLYR I Sbjct: 61 ENKYNTIYNSSDVKKYVNRYFAKCGHFIRLLDSTPITNDFHARHSCKSRTYLYRFMIPKI 120 Query: 117 ITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTID 173 Q E + D + R Q +G DFTTF + + +R + Sbjct: 121 CNEQRISLPETIHTHHLRAYDFDIDKARRGIQLFMGTKDFTTFSAKSITSRKIQYVRALH 180 Query: 174 HFDVNS------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 F + +SFL+ Q+R +G+L +G GK T D+ Sbjct: 181 AFTLEEAQPLMPFDPLSNNFTYWHFTCKGKSFLYNQVRRMIGALIALGLGKITEKDITVM 240 Query: 222 LQAQDRKECGP---LAPPEGLYFDSVEYS 247 LQ P PP GL+ +VEY Sbjct: 241 LQVPSHHNWDPRVTPVPPNGLHLLNVEYD 269 >gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera] Length = 466 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 102/298 (34%), Gaps = 71/298 (23%) Query: 3 RY-CMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGV 55 RY + + Y G ++G+ + + +++ I KA+ + + GRTD GV Sbjct: 101 RYVALKVMYFGPRFYGFASEAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKGV 160 Query: 56 HALRQVAHFDLVREWV-------------------------------------PVILCKA 78 ++ QV L + + Sbjct: 161 SSVGQVIALFLRSNLKEIGAREENSKEVVPEEQYEERREVKDEGGGDSLASEGEIDYMRV 220 Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 LN L I ++ V FHARFS + R Y Y +L+ Sbjct: 221 LNRVL--PKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRG----------------NLN 262 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFGN------LIEIRVVAR 191 M A + VG HDF F + + R I F++ N L I++ Sbjct: 263 ILAMESAGKKFVGEHDFRNFCKMDAVNVHNYRRHIISFEIAPTNNRYDGNQLWAIKIKGS 322 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEYS 247 +FL Q+R V L ++G G + ++ L + RK +AP L +S E+ Sbjct: 323 AFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEFE 380 >gi|302808177|ref|XP_002985783.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii] gi|300146290|gb|EFJ12960.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii] Length = 372 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 96/284 (33%), Gaps = 64/284 (22%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y GS Y G+ Q ++++ I A+ + GRTD GV A Sbjct: 69 VALKIMYIGSCYHGFASQGCAFNTVESEIFAALQRTNLVVGSIADANYSRCGRTDRGVSA 128 Query: 58 LRQVA------------------------------------HFDLVREWVPVILCKALNA 81 QV F + + +LN Sbjct: 129 TAQVIALYLRSKKKALDDTEESGYGSKDRVIVARSSREEEEMFAAETDDDEIDYVSSLNR 188 Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 L I +L V FHARFS + R Y Y + I L+ + Sbjct: 189 AL--PADIRVLGWCPVPPGFHARFSCLYREYKY----------------FFIDDGLNIDA 230 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIR 199 M+ A+Q L+G HDF F + + R I FD+ L + V +FL Q+R Sbjct: 231 MKQASQRLLGEHDFRNFCKMDADNIHNYTRQILAFDILPIEECLWVMHVRGNAFLWHQVR 290 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYF 241 L ++G G T T ++ L RK +AP L Sbjct: 291 CMAAVLFMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVL 334 >gi|15790870|ref|NP_280694.1| tRNA pseudouridine synthase A [Halobacterium sp. NRC-1] gi|169236616|ref|YP_001689816.1| tRNA pseudouridine synthase A [Halobacterium salinarum R1] gi|24212587|sp|Q9HNP6|TRUA_HALSA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229470757|sp|B0R6V1|TRUA_HALS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|10581435|gb|AAG20174.1| pseudouridylate synthase I [Halobacterium sp. NRC-1] gi|167727682|emb|CAP14470.1| tRNA-pseudouridine synthase A [Halobacterium salinarum R1] Length = 266 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 95/255 (37%), Gaps = 35/255 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 M R + Y+G Y G+QRQ + S++ G + A+ + + AGRTD+GV Sbjct: 1 MPRRAFRVAYDGRPYHGFQRQPDVSTVAGELFGALRRLDVFDGAKPPGYAAAGRTDAGVS 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q FD P AL D I + + +FHA A+ R+Y+Y Sbjct: 61 ARAQTVAFDAPAWLTPDAFTGAL------PDPIQVWAHADAPPEFHATHDAVARTYVYYW 114 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + ++ A L G HD F ++ ++ +R +D Sbjct: 115 YAPDSRATDDRA--------------AGALDRLTGTHD---FHNLTPNTTNTVRELD-AT 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG----P 232 ++ G I V A F +R V SL + + ++ L D G P Sbjct: 157 LDRDGAFRVITVRAGGFCRELVRRVV-SLVQLVTETGDTDRIDTVL--GDEPVAGPDGVP 213 Query: 233 LAPPEGLYFDSVEYS 247 A P L +V Y Sbjct: 214 PADPHPLVLHAVAYD 228 >gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia] Length = 414 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 106/269 (39%), Gaps = 42/269 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R + Y G Y G ++Q N ++I+ + KA+ V + AGRTD GV Sbjct: 49 TRVAFKLAYVGINYHGLEQQINQQNTIENHLFKALQRVRMIDNRDDCNYTRAGRTDKGVS 108 Query: 57 ALRQVAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ V ++ + L + LN L + I IL+ IVD++F+AR+ I+R Y Y Sbjct: 109 AIGNVVALNVRKIGKSDKLYAQILNRVL--PEDIQILDECIVDEKFNARYDCIKRVYKY- 165 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDH 174 + + E M A +G HDF F + A+ + +RTI + Sbjct: 166 ---------------YFYKMDYNIELMTEAMLLFIGEHDFRNFCKLDVIANQNFVRTIMN 210 Query: 175 FDVNSFGN-----------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + L + + +FL QIR + L L+G G S+ Sbjct: 211 ITIEEVFPENAPRCSTLFKDDDRLRLYCVTIEGNAFLWHQIRYMMAVLFLIGKGIEKSSV 270 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + D K +AP L + E+ Sbjct: 271 ITDLFTKFDGKPNYQMAPDYPLVLHNCEF 299 >gi|297279170|ref|XP_001093509.2| PREDICTED: hypothetical protein LOC705127 [Macaca mulatta] Length = 511 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 100/264 (37%), Gaps = 60/264 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +Y G+ + G + V G R A+ +V Sbjct: 269 RYLVYFQYVGTDFNG------------------------VAAVRGTQR------AIGEVT 298 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 R PV L +L V FHAR +A R+YLYR++T Sbjct: 299 PGQTGRVVPPVSLT----------CCHRVLRAFRVPSDFHARHAATSRTYLYRLVTGCHR 348 Query: 123 ----LALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 E+ W + LD M+ AAQHL+G HDF+ F+S SP+RT+ V Sbjct: 349 LAELPVFERNLCWTLQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSV 408 Query: 178 NSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + + ++SFL+ Q+R L VG G ++ L++ Sbjct: 409 SPGQASPLVTPEESRKLQFWSLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILES 468 Query: 225 QDR--KECGPLAPPEGLYFDSVEY 246 QD K +AP GL+ SV Y Sbjct: 469 QDPLGKHQARVAPAHGLFLKSVLY 492 >gi|320591696|gb|EFX04135.1| pseudouridylate synthase 3 [Grosmannia clavigera kw1407] Length = 522 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 70/293 (23%), Positives = 99/293 (33%), Gaps = 52/293 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVT----------GEIVVVHG---- 47 + + Y G Y G++ Q +G +I+ + KA+ E+ +V Sbjct: 60 IALKLAYLGKRYGGFEYQPSGALPTIEEELWKALTKACLVFPAPGASADEVDLVRCEYSK 119 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDK-QFHARFS 106 GRTD GV A QV + V K LN L I +L F ARFS Sbjct: 120 CGRTDRGVSAFGQVVALRVRSNKRAV-YAKVLNRLL--PPDIRVLAWCATPPADFSARFS 176 Query: 107 AIRRSYLYRII-------TRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTT 157 R Y Y P + P LD + MR AA VG HDF Sbjct: 177 CRERQYRYFFTQPAYFTEDGSRPGPTSSAGSASQPPDGWLDIDAMRDAATRFVGLHDFRN 236 Query: 158 FRSIHC--QASSPIRTIDHFDVNSFGNL-------------------IEIRVVARSFLHT 196 F + Q ++ R I + ++ V +FL Sbjct: 237 FCKVDPSKQITNFERRIFAAGITEVADVHSSLRCLSSSASSVSFPRVYSFDVRGSAFLWH 296 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 QIR V L LVG G+ + + + L AQ + P+A L + Sbjct: 297 QIRHMVAVLFLVGQGREPADVVSQLLGVAAQPGRPNYPMADETPLVLWDCIFP 349 >gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82] Length = 446 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 91/280 (32%), Gaps = 50/280 (17%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-------TGEIVVVHGAGRT 51 + + Y+G Y G Q +++G + A+ E GRT Sbjct: 50 RKIALKFSYSGWEYGGLAFQLGPTPLPTVEGVLFDALAKARLIDQEAGFEGCGWEKCGRT 109 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GV A QV + DTI +L S V +F ARFS + R Sbjct: 110 DRGVSAAGQVVSLWATTSKPTFEHDYLSILNRLLPDTIRVLAWSPVAPKFSARFSCLYRH 169 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y Y + P LD M+ AA LVG HDF + Q I Sbjct: 170 YKY----------------FFSPLGLDIPRMQQAALRLVGDHDFRNLCKLDPQKQITIFR 213 Query: 172 -------IDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 I+ + G + +V +FL+ Q+R + L LVG G + + L Sbjct: 214 RKVITAEIEPLSLAENGEGVYVFNLVGTAFLYHQVRHIMAILFLVGTGLEPPSVVSSLLN 273 Query: 224 AQ----------------DRKECGPLAPPEGLYFDSVEYS 247 + DRK +A L Y Sbjct: 274 VEAGVEPTKDGDSPYEVVDRKPEYQMADALPLMLWECGYP 313 >gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens] gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens] Length = 279 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 91/249 (36%), Gaps = 45/249 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 R + Y G Y+G Q+ +I+ + A+ +GRTD GV Sbjct: 9 RRVAFKLAYIGWDYYGLASQEGIEKTIEAELFNALTKTCLIENRTNSNYSRSGRTDKGVS 68 Query: 57 ALRQVAHFDLVREW-----------VPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 AL QV ++ + K LN L I IL + VD F ARF Sbjct: 69 ALGQVISLNVRTNLASGPGVIVETVSELSYVKLLNKVL--PGDIRILAWAPVDNDFSARF 126 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQ 164 + + R+Y Y + +++ E M AAQ L G HDF F + Sbjct: 127 NTVSRTYKY----------------YFPRANMNIEAMNEAAQRLKGEHDFRNFCKMDLAN 170 Query: 165 ASSPIRTIDHFDVNSFG----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 S+ R I V S + EI V ++FL Q+R V L L+G G Sbjct: 171 VSNFRREILSIKVQSIETPYVLQNQGFEMCEIIVCGKAFLWHQVRCMVAILFLIGQGLED 230 Query: 215 STDLEKALQ 223 + + L Sbjct: 231 ANIINYMLD 239 >gi|153813978|ref|ZP_01966646.1| hypothetical protein RUMTOR_00185 [Ruminococcus torques ATCC 27756] gi|145848374|gb|EDK25292.1| hypothetical protein RUMTOR_00185 [Ruminococcus torques ATCC 27756] Length = 221 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 16/224 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + ++Y+G+ Y GW R +I I + +TGE + + +T GVHA Sbjct: 1 MPNIKLTLQYDGTRYLGWTRPAADGYAKTISYRISSVLQKMTGEDITLFAGAKTAPGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L Q +F + LN YL I IL+ IV +F + +A+ R+YLYRI Sbjct: 61 LCQTVNFHTESPFSDTYFLSKLNEYL--PKDIHILSSEIVSDRFRSDLNAVSRTYLYRIC 118 Query: 118 TRQAPLALEKGRAWLIPKSL---DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 T + IP+ + + +R AA LVG HDF + + + + I Sbjct: 119 TAPVQNIFTRAYTANIPEIISESEVAAIRKAADSLVGVHDFRSLSGVKKKKGTVK-EIFD 177 Query: 175 FDVNSFGN-------LIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 V+ L+ I++ A FL+ + L G G Sbjct: 178 ISVSHSKETENDSFSLLTIKICANDFLYLMPEHIIEFLNKKGSG 221 >gi|123976924|ref|XP_001330657.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis G3] gi|121897278|gb|EAY02404.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis G3] Length = 353 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 93/267 (34%), Gaps = 39/267 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G G+ Q + + +++ I +A+ GRTD+GV + Sbjct: 22 IALRIAYIGWNLKGFVLQNDTNETVEYHIFEALKRAKLIRNENECNYSLCGRTDAGVSGV 81 Query: 59 RQVAHFDLVREWVP--------------VILCKALNAYLKISDTISILNLSIVDKQFHAR 104 V + + A + +I + ++ V F+AR Sbjct: 82 GNVISVRVRSVCPTGLGSIPREGAKVQKEEMNYAQILNGILPPSIRVTGVAYVKPDFNAR 141 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 F R Y Y + + M+ AA+HL+G HD+ F Sbjct: 142 FDCATRGYRYFFHKFDK----------------NIDLMKEAAEHLLGEHDYRAFCKFSPD 185 Query: 165 A-SSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + +R I + ++ G + +V F+ QIR L VG+G + ++ L Sbjct: 186 STKHCVRKIYKCEFGDAGGGVWYFEIVGSGFIWHQIRCIASILFAVGNGFEKPSITKELL 245 Query: 223 QAQDR--KECGPLAPPEGLYFDSVEYS 247 + P+A PE L F + Y Sbjct: 246 NTAKYPGRPNYPIADPEPLVFWNAGYE 272 >gi|320163253|gb|EFW40152.1| tRNA-pseudouridine synthase [Capsaspora owczarzaki ATCC 30864] Length = 548 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 91/269 (33%), Gaps = 67/269 (24%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-VTGEIVV---VHGAGRTDSGVHALR 59 + I Y G Y G Q + +++G + A+ + + GRTD+GV A Sbjct: 142 IALKIAYLGWKYNGLAIQPDVETVEGHLISALKTCMLIPDLSWANYSRCGRTDAGVSAFG 201 Query: 60 QVAHFD-------------------------LVREWVPVILCKALNAYLKISDTISILNL 94 QV D + LN L I ++ Sbjct: 202 QVVSLDVRTNLTEGVGVIQQESAIPFQKGRKTEATHAELEYVFKLNRQL--PADIRVVAW 259 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 + V F ARFS + R Y Y + +++ E M+ AAQ+ VG HD Sbjct: 260 TPVPLAFDARFSCLYRKYKY----------------FFPKNNMNIEAMQRAAQYFVGTHD 303 Query: 155 FTTFRSIHCQ--ASSPIRTIDHFDVNSF------------------GNLIEIRVVARSFL 194 + F + S +R I FDV + E+ V+ +FL Sbjct: 304 YRNFCKTNFDNGVKSFVRRILAFDVVKSTCLPINSATDATDLEGQAAEMYELNVLGFAFL 363 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + Q+R L +VG G +E L Sbjct: 364 YHQVRCMTSILFMVGQGLEPPEVVEHMLD 392 >gi|193666867|ref|XP_001946781.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 1 [Acyrthosiphon pisum] gi|328702018|ref|XP_003241780.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 2 [Acyrthosiphon pisum] Length = 402 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 94/267 (35%), Gaps = 41/267 (15%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 I Y G Y G+ Q + +I+ + +A+ + + + H GRTD GV + Sbjct: 59 VVFKILYLGWDYHGFATQDVSEKTIEYELFRALTICCLIESRQTSNYHRCGRTDKGVSSF 118 Query: 59 RQVAHFDLVREWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV + CK LN L I ++ V F ARF R+Y Y Sbjct: 119 SQVISLTVRSNGDDSEELPYCKMLNRLL--PKDIRVVAWGPVKDDFSARFDCGSRTYKY- 175 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTID 173 W LD + M A Q +VG HDF + R I Sbjct: 176 ---------------WFPRGDLDVDLMNQAIQQVVGTHDFRNLCKMDVANGVVQFYRRIT 220 Query: 174 HFDV-----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 D+ N ++ E+ +V ++FL QIR V L LVG K + L Sbjct: 221 SADIKICSENNQFSKNRDYDMCELTIVGKAFLWHQIRCIVSVLILVGCRKENPNIFKDLL 280 Query: 223 --QAQDRKECGPLAPPEGLYFDSVEYS 247 + RK LA L ++ Sbjct: 281 NIENCPRKPQYCLASDLPLNLFDCQFE 307 >gi|328770686|gb|EGF80727.1| hypothetical protein BATDEDRAFT_3084 [Batrachochytrium dendrobatidis JAM81] Length = 289 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 91/275 (33%), Gaps = 49/275 (17%) Query: 4 YCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVH 56 + I Y G Y+G+ + +++ I KA+ + G GRTD GV Sbjct: 26 IALKISYIGDKYYGFASASNDSVPTVESYIFKALEVARLIPSDGGACAWSRCGRTDKGVS 85 Query: 57 ALRQVAHFDL---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A QV + +W + LN L D I +L S VD F ARF+ Sbjct: 86 AFDQVVSVWVRTARPGDRDTLDWDQLPYLNILNRLL--PDDIRVLAWSPVDPIFDARFTC 143 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y Y LD MR AA VG HD I ++ Sbjct: 144 SHRKYNYFFDGA----------------GLDLIAMRDAASRFVGTHDCRHICKIDPTKAA 187 Query: 168 ----PIRTIDHFDVNSF------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 +RTI D+ + V R+FL Q+R+ + L L+G G Sbjct: 188 REGFFVRTIMECDIVPVPVDGAPDRFHVLVVKGRAFLWHQVRNMMALLFLIGRGMEMPDM 247 Query: 218 LEKALQAQDRKECG-----PLAPPEGLYFDSVEYS 247 + L +AP L Y Sbjct: 248 ISDMLDLTKHAPAAGRPFYEMAPDGPLVLVECAYP 282 >gi|115376217|ref|ZP_01463459.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] gi|115366790|gb|EAU65783.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 303 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 102/252 (40%), Gaps = 18/252 (7%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G G+ G+QRQ G ++Q ++E + TG V AGRTD GVHA QV Sbjct: 31 LWLWYRGGGFHGFQRQPEGPTVQSTLEAVL-RSTGVPATVMPAGRTDRGVHARMQVVSLR 89 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L P L + + + + FHA++SA ++Y YR+ Sbjct: 90 LEAGDTPEALAAR--LPALLPPDLGVCAVRRPPPSFHAQWSAAGKTYCYRVQLGGRVSET 147 Query: 126 EKGRAW-------LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L +++ E + Q VG+ DF F + RT++ V+ Sbjct: 148 WRPYVLEAAEEPRLAQRAIAPERLAELLQGAVGQRDFWAFHASSSPRKP--RTLESATVH 205 Query: 179 S-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--LAP 235 G L EI++ SF Q+R VGS L G+ AL++ E P A Sbjct: 206 ELEGGLFEIQLRGDSFARYQVRYLVGSALLTAAGQLPEAQWRAALES---AEAIPGLRAA 262 Query: 236 PEGLYFDSVEYS 247 GL V Y Sbjct: 263 AAGLILWEVRYP 274 >gi|118374735|ref|XP_001020555.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila] gi|89302322|gb|EAS00310.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila SB210] Length = 309 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 110/278 (39%), Gaps = 32/278 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 ++Y Y G Y G+Q Q K SIQ +++ A+ +T + +H + RTD GV+A Sbjct: 15 VKYLATCSYIGMNYSGFQTQILNGKRIPSIQDALQDALKKITKQDTPIHTSSRTDQGVNA 74 Query: 58 LRQVAHFDLVRE-----WVPVILCKALNAYL-KISDTISILNLSIVD-KQFHARFSAIRR 110 L F + R P I+ K++N +L ISI N+ V F + +++++ Sbjct: 75 LAHPFVFIINRNQNQKILEPSIIKKSMNMHLKDAKHQISIENIYYVHLTDFDVKANSLKK 134 Query: 111 SYLYRI----ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y Y I A + + + + +D E + A Q VG H+F F S Sbjct: 135 EYNYFIEANLKDNWANTFQQHKQVTTMTERIDQEKLNQALQQYVGTHNFQNFTIKAEHIS 194 Query: 167 S---PIRTIDHFDVN-------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +RTID + I+I A+SFL QIR VG GK Sbjct: 195 HFGCYVRTIDSITIENYSHPFYEEAQCIKIIFKAKSFLAYQIRFMVGEALQYALGKLDFD 254 Query: 217 DLEKALQAQD-------RKECGPLAPPEGLYFDSVEYS 247 K L + A P GL V+Y Sbjct: 255 SFLKLLDPPKELTPQEVHENNRIRAQPRGLMLKRVDYP 292 >gi|108760886|ref|YP_632235.1| putative tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] gi|108464766|gb|ABF89951.1| putative tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] Length = 281 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 96/252 (38%), Gaps = 15/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + I Y G + G+QRQ G ++Q ++E+A+ V G + +GRTD GVHA QV Sbjct: 11 VALWIWYRGGIFRGFQRQPEGPTVQSALEEALRSV-GVPATLMPSGRTDRGVHARMQVVS 69 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 L L K L L + + + FHA++SA + Y YR A + Sbjct: 70 VRLEAGDSAESLEKRLPPRL--PPGLGLCGVRR-PTSFHAQWSACGKEYRYRFQLGGAVM 126 Query: 124 ALEKGRAWLIPKSLDC-------ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A + E + + G DF F RT++ Sbjct: 127 PEWAPYALDVSAEPLLQATAVTPERLAALLRSAEGTRDFIAFHEKSSPRKP--RTLESAT 184 Query: 177 VNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +++ G L E R+ F QIR VGS V G AL+ E G AP Sbjct: 185 LHALGGGLYEARLRGDGFARYQIRYLVGSALKVAAGLLPEEAWLAALETGQAME-GFKAP 243 Query: 236 PEGLYFDSVEYS 247 GL V Y Sbjct: 244 AHGLVLWEVRYP 255 >gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8] gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8] Length = 455 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 90/276 (32%), Gaps = 48/276 (17%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-------TGEIVVVHGAGRT 51 + + Y G + G QK+ +++G + A+ E GRT Sbjct: 79 RKIALKFCYGGWDFGGLAIQKDRTPLPTVEGKLFGALVRARLVDPKGGLEGCGWERCGRT 138 Query: 52 DSGVHALRQVAHFD------------LVREWVPVILCKALNAYLKISDTISILNLSIVDK 99 D GV A QV +N +L DTI IL S VD Sbjct: 139 DRGVSAAGQVISLWVRSALSQEELTPTATPTEEHPFIYMINRHL--PDTIKILAWSPVDP 196 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F +R+S R Y Y + P LD MR A +L G HDF Sbjct: 197 SFSSRYSCTWRHYKY----------------FFSPVGLDVAAMRAACAYLPGTHDFRNLC 240 Query: 160 SIHC--QASSPIRTIDHFDVNSF-----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 I Q R I H ++ G + + SFL+ +R+ +G L +G Sbjct: 241 KIDPTKQLDQFRRDILHASISPVDASNPGGMHVFDLKGSSFLYHMVRNIMGVLLSIGARL 300 Query: 213 WTSTDLEKALQ-AQDRKECGPLAPPEGLYFDSVEYS 247 T L + A + +A L Y Sbjct: 301 EPPTLLPALMNVAPGCRPEYMMADALPLTLWDCGYP 336 >gi|303245000|ref|ZP_07331323.1| tRNA pseudouridine synthase A [Methanothermococcus okinawensis IH1] gi|302484652|gb|EFL47593.1| tRNA pseudouridine synthase A [Methanothermococcus okinawensis IH1] Length = 263 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 30/250 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQV 61 Y + + YN Y G+Q Q + ++ I A+ ++ GRTD GV A+ Sbjct: 2 YILKVAYNKHHY-GFQTQPHKETVCDKIMDALKECNYLANDKIIFCGGRTDKGVSAIGNF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L +E + + L + I I +D ++ R Y Y + Sbjct: 61 IVVELSQEPILSHIYSKL-----KNKGIWIFGYKKIDTIPEVKY----RHYRYILPIIPH 111 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSF 180 + + M A++ L+G H F + SPIRTI + Sbjct: 112 ID------------EYNIDLMIEASKKLIGEHSFHNLSKKDRTKEKSPIRTIYDIKIEKN 159 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I V+ +SFL +R + +L VG +++ L ++ K P AP EGL Sbjct: 160 LYYITIDVIGKSFLWNMVRKIITALSEVGKENKPVGWIDELL-CENHKGGVPPAPAEGLI 218 Query: 241 FD----SVEY 246 +EY Sbjct: 219 LMEAKTDIEY 228 >gi|313665546|ref|YP_004047417.1| tRNA pseudouridine synthase A [Mycoplasma leachii PG50] gi|312949580|gb|ADR24176.1| putative tRNA pseudouridine synthase A [Mycoplasma leachii PG50] Length = 249 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 95/248 (38%), Gaps = 9/248 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N SIQ + KAI V GA +TD+ VHAL Q Sbjct: 5 ILLTLCYDGSNYHGWINQINSISIQTVLNKAIKKVIKTSEFKTIGASKTDANVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + KA+N L I ILN V+ F+ R + Y Y I + Sbjct: 65 LLIIYFTPILEKFIKAINKAL--PKDIRILNAKFVNSDFNIR-EVEYKIYNYYINDYKFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH---CQASSPIRTIDHFDVNS 179 + + + +D ++ VG H+F F + R ID V Sbjct: 122 IFTNRYEYFWKHSKIDILKLQEIFNLFVGEHEFKLFSGLKENEWDNYQTKRIIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG-KWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I+ A F+ QIR + + K L + LQ K+ + +G Sbjct: 182 INNKVVIQFKATGFIRYQIRIIIANCLNAYLNYKINVNTLIEMLQG-IGKKTPFIIEAKG 240 Query: 239 LYFDSVEY 246 L +++ Sbjct: 241 LVLQQIKF 248 >gi|297789719|ref|XP_002862797.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp. lyrata] gi|297308524|gb|EFH39055.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp. lyrata] Length = 244 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 25 IWKLPTTVHVFLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSAQSKVYRYQIYNDT 82 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHFDVN 178 ++ A+ L+ MR VG HD + F + + P+++I F V Sbjct: 83 FMDPFQRYWAYHCAYKLNASKMRETVDLFVGMHDVSAFANATREDGVPDPLKSISRFYVI 142 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP----LA 234 G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 143 QMGSLLQLEVEGSGFLYRQVRNMVALLIHIGKESLDSDIVPMILETKDRRVLAKYTTLPV 202 Query: 235 PPEGLYFDSVEY 246 PP GL SV+Y Sbjct: 203 PPHGLCLVSVKY 214 >gi|194744150|ref|XP_001954558.1| GF18329 [Drosophila ananassae] gi|190627595|gb|EDV43119.1| GF18329 [Drosophila ananassae] Length = 410 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 74/263 (28%), Positives = 111/263 (42%), Gaps = 29/263 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL------VTGEIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ + E V + A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E +A NA L D I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPDELD----LEAFNADL--PDQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIR 170 + T + EK + I L E +R + G +F F S S R Sbjct: 187 LPTVAFASSEEKIEDLHDTYRITPEL-LEKVRETLKLYEGTKNFHNFTSKKNFLDPSAKR 245 Query: 171 TIDHF-----DVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F ++ G + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 246 FIMSFVSSDPFLSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTESLERALTE 305 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + + P+AP GL D+V Y Sbjct: 306 E--RLDLPMAPGLGLVLDTVHYE 326 >gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis] gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis] Length = 464 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 94/295 (31%), Gaps = 67/295 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 R + + Y G G+ Q+ ++++ + A+ E GRTD GV Sbjct: 80 RRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVKSRESCSYSRCGRTDKGVS 139 Query: 57 ALRQVAHFDLV-----------------------REWVPVILCKALNAYLKISDTISILN 93 A QV ++ + ++ LN L I +L Sbjct: 140 AFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKEILYVDILNKVL--PKEIRVLA 197 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 + V+ F ARFS R Y Y + +LD + M +A++ L G H Sbjct: 198 WAPVELDFDARFSCSYRKYKYLFPSA----------------NLDIDLMNLASKKLEGEH 241 Query: 154 DFTTFRSIH--CQASSPIRTIDHFDVN-----------------SFGNLIEIRVVARSFL 194 DF F + R I F V + E + +FL Sbjct: 242 DFRNFCKMDVANGVIQFTRNITSFKVQKVSNATYSAPGENKAKQRGYEMCEAVICGSAFL 301 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 Q+R + L +VG G ++ L + ++ +A L Y Sbjct: 302 WHQVRCMMSILLMVGQGLEQPEVIDWLLDIEKCPQRPQYNMASELPLVLYDCVYE 356 >gi|193706844|ref|XP_001945291.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Acyrthosiphon pisum] Length = 441 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 25/259 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGE------IVVVHGAGRTDSGV 55 +++ Y+G GY G QR K +++ + A+ L+T E + A RTD GV Sbjct: 69 AILLAYSGLGYLGLQRNKGVKTVEEELLLALKSKNLITDEGFEQIQTMQFQRAARTDKGV 128 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 ALRQ+ L + ++ AL + I +L++ V K F+++ S R+Y Y Sbjct: 129 SALRQIISLLLPEDVDKQVINTAL------PEQIRVLDIRRVTKGFNSKNSCDGRTYSYT 182 Query: 116 IITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTID 173 T AP ++ I ++ + + + +G H++ + S R + Sbjct: 183 CPTFAFAPAETTIDFSYRIDATV-IDRINEVVKSFLGCHNYHNYTSKKKPGDPSAQRYMV 241 Query: 174 HFDVNSFGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 F + LI + V +SF+ QIR VG + + G +E+A Q DR Sbjct: 242 SFYCDKPFEKDGVELISLYVRGQSFMLHQIRKMVGVIIAICRGVAKHDVIERAWQ-PDRL 300 Query: 229 ECGPLAPPEGLYFDSVEYS 247 + P+AP GL + V Y Sbjct: 301 DL-PIAPGLGLVLEEVHYD 318 >gi|194699074|gb|ACF83621.1| unknown [Zea mays] Length = 414 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 43/287 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---------VVVHGA---- 48 + + ++I Y+G + GWQ+Q +++QG +EK + E + + G Sbjct: 119 VTFKVVISYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVA 178 Query: 49 GRTDSGVHALRQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL+QV F R+ V + A+N D + L++S V ++FH F+A Sbjct: 179 GRTDKGVTALQQVCSFYTWRKDVKSGDIKGAINE--AAPDKLKPLHVSEVSREFHPNFAA 236 Query: 108 IRRSYLYRIITRQAPL----------ALEKGRAWLIPKSLDCENMRIAAQHLVGR----- 152 R Y+Y + LE + P+S D + + L G+ Sbjct: 237 KWRRYMYIFPLDEDADLILGEAQSSKTLENSEHNIKPQSFDVSKVDEILKPLAGKTLSYK 296 Query: 153 ---HDFTTFRSIHC-------QASSPIRTIDHFDVNSFGNLIE--IRVVARSFLHTQIRS 200 D RS+ + + + + + + G ++ + +VA FL +R Sbjct: 297 MFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANRFLRKMVRV 356 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V + + L ++A DR+ P APPEGL V Y Sbjct: 357 LVATAIREAAAGAGADALLNLMEATDRRATAPPAPPEGLCLVDVGYE 403 >gi|323452423|gb|EGB08297.1| hypothetical protein AURANDRAFT_11850 [Aureococcus anophagefferens] Length = 266 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 93/264 (35%), Gaps = 27/264 (10%) Query: 1 MIRY-----CMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLVT----GEIVVVHG 47 M RY + I Y G Y G+ Q +++ + A+ E Sbjct: 11 MSRYEQRCIALWISYEGGAYSGFAEQNIPGAGVDTVERQLFAALKKTCLVESRESCGYSR 70 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALN-AYLKISDTISILNLSIVDKQFHARFS 106 GRTD GV AL QV + +N + D + L V +F ARFS Sbjct: 71 CGRTDKGVSALGQVVGLRVRSAARAGEPLDYVNMLNRVLPDDVRALAWRPVVPEFSARFS 130 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QA 165 R+Y Y A G A+ D M AA LVG HDF F + Sbjct: 131 CASRTYRYFF---PATSP-NTGAAY------DVPAMAAAAARLVGDHDFRNFCKMDVLHV 180 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA- 224 + R + DV G+ + ++FL +RS V L LVG+G ++ L Sbjct: 181 KNFRRVVYAADVRKTGDGFFFEIHGQAFLWHMVRSLVAVLFLVGEGLEPPAVVDALLDVA 240 Query: 225 -QDRKECGPLAPPEGLYFDSVEYS 247 RK +A L + Sbjct: 241 RTPRKPQYLIADERPLVLHDCAFD 264 >gi|183601972|ref|ZP_02963341.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis HN019] gi|241190461|ref|YP_002967855.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195867|ref|YP_002969422.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218857|gb|EDT89499.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis HN019] gi|240248853|gb|ACS45793.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250421|gb|ACS47360.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793448|gb|ADG32983.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 100/235 (42%), Gaps = 33/235 (14%) Query: 44 VVHGAGRTDSGVHALRQVAHFDLVRE-------WVPVILCKALNAYL--KISDTISILNL 94 + AGRTD+GVHA QV H D+ + + + +AL L + D I+I + Sbjct: 8 RLTVAGRTDAGVHATHQVCHVDVPDQTLGQCVGHMNLTPVQALQTRLSRMMPDDIAIHGI 67 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 S+ F ARFSA+ R+Y+YRI + P K AW + LD M AA +G H Sbjct: 68 SVAPAGFDARFSALERTYVYRIADARVPWDPRLKDFAWRTDRELDIAQMNAAAALTLGLH 127 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFG--------------------NLIEIRVVARSF 193 DF +F + + IR + L+ +VA +F Sbjct: 128 DFGSFAIANP-GGTTIREVKTAYWQRVPTRPLLGPGMGERYHTPAVESGLLCFTIVADAF 186 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEYS 247 +RS VG+ VG GK ++ R+ GP+AP +GL + + Y Sbjct: 187 ARNMVRSLVGACVQVGMGKRDVDWFAGKMRVPLREGSTGPIAP-QGLTLEHIAYP 240 >gi|325186551|emb|CCA21092.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14] Length = 493 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 104/297 (35%), Gaps = 74/297 (24%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF--------LVTGEIVVVHGAGRTDSGV 55 M Y+G Y G+ RQ + I+ +IEK +F + + + GRTD GV Sbjct: 80 VAMKFLYSGERYCGFARQDH---IEETIEKYLFDTMQRTKLITSIDDCCYSRCGRTDKGV 136 Query: 56 HALRQVAHFDL---------------------------------VREWVPVILCKALNAY 82 A QV + +R+ V +LN Sbjct: 137 SAFGQVIGIKVRSNVPIDAELLDVDSLDQVASGGRVRVKTQDGRIRKITEVDYAASLNRT 196 Query: 83 LKISDTISILNLSIVDKQFHARFSA-IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 L I + ++ F ARF+ RSY Y + + K LD E Sbjct: 197 L--PSDIRVYSVVNAPNNFSARFNCDRGRSYRY----------------FFMKKDLDIEK 238 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---------NSFGNLIEIRVVARS 192 MR+AA G HDF F I + R + F + N + + + + Sbjct: 239 MRLAAIGFEGLHDFRNFCRIDTNCQTFDRNVRSFKIKSSDEIGDKNPYRQMYYFEIHGNA 298 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 FL Q+R V L L+G G+ + ++K L + RK +AP L + Sbjct: 299 FLWHQVRCMVSILFLIGQGREEPSIVKKMLDIEKYPRKPQYAIAPDHPLVLHDCRFD 355 >gi|257053070|ref|YP_003130903.1| tRNA pseudouridine synthase A [Halorhabdus utahensis DSM 12940] gi|256691833|gb|ACV12170.1| tRNA pseudouridine synthase [Halorhabdus utahensis DSM 12940] Length = 275 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 94/253 (37%), Gaps = 34/253 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSGVH 56 R I Y+G + G+QRQ + +++ +I A+ + AGRTD+GV Sbjct: 6 RRAFRIAYDGRPFHGFQRQPDVATVSDAILDALRELDVLEDGDNVPPGYAAAGRTDAGVS 65 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL Q FD P ALN+ L + + V +FHA A+ R Y Y + Sbjct: 66 ALAQTVAFDCPDWLSPA----ALNSEL--PADVRAWASADVPAEFHATHDAVAREYTYHL 119 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 AP A A L G HDF F + +R + + Sbjct: 120 H---APDA-------------SVSRAGDALDALAGEHDFHNFT---PDDTGTVRDLTG-E 159 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLA 234 S G+ + + + A F +R V + + G +E+ L + A Sbjct: 160 ARSEGDFLVVTLRADGFPRQFVRRAVTVIDALASGVAELDRIEQLLGDDPVEGPAGVAPA 219 Query: 235 PPEGLYFDSVEYS 247 PE L +VEY Sbjct: 220 APEALVLTAVEYP 232 >gi|47208381|emb|CAF93145.1| unnamed protein product [Tetraodon nigroviridis] Length = 409 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 91/283 (32%), Gaps = 57/283 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 75 VALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQDRQSSNYHRCGRTDKGVSAF 134 Query: 59 RQ----------VAHFDLVREWVPVI----------LCKALNAYLKISDTISILNLSIVD 98 Q F L K LN L I I N + Sbjct: 135 SQVTAVQSLHTPPFSFKLPENVDADKKSQTAVSELPYVKMLNRVL--PHDIRIWNWAPAA 192 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + F ARF R+Y Y + SL+ E M AA+ G HDF Sbjct: 193 EGFSARFDCQSRTYRY----------------YFPRGSLNVELMADAAERYEGTHDFRNL 236 Query: 159 RS--IHCQASSPIRTI----------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + RTI +H ++ V +FL+ Q+R + L Sbjct: 237 CKMDVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALLL 296 Query: 207 LVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L+G + + L Q RK +A L + Sbjct: 297 LIGQKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFE 339 >gi|238882564|gb|EEQ46202.1| conserved hypothetical protein [Candida albicans WO-1] Length = 491 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 86/277 (31%), Gaps = 52/277 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M Y G Y G Q +++ KA+ V E V GRTD Sbjct: 131 MRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTD 190 Query: 53 SGVHALRQVAHFDLVREWVPVI------------LCKALNAYLKISDTISILNLS-IVDK 99 GV A+ QV ++ LNA L I + ++ Sbjct: 191 KGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANL--PSDIKVHSICLRPPP 248 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R Y Y + LD E M A+ G HDF F Sbjct: 249 DFDARFSCLSRHYRYI----------------FRKQDLDIELMNQGAKLYQGIHDFRNFC 292 Query: 160 SIH--CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + Q ++ +R I + + + +FL Q+R V L +G G + + Sbjct: 293 KLDGSKQITNFVREIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAILFTIGQGLESPS 352 Query: 217 DLEKALQAQDRKECGPLAP----PE--GLYFDSVEYS 247 + + P P L E+ Sbjct: 353 IITDLMD----TNKFPTKPQYEMAHDIPLVLYDCEFP 385 >gi|86134196|ref|ZP_01052778.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] gi|85821059|gb|EAQ42206.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] Length = 260 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 97/253 (38%), Gaps = 13/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y + + + G + GWQ+Q N ++ ++K++ V + GAGRTD+ V A R + Sbjct: 7 YLISLGFLGFRFSGWQKQTNAKTLHDIVDKSLSFVLKDVDYKTIGAGRTDAKVSANRYLF 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + LN+ L +S V +F+ + + Y Y Sbjct: 67 QLFTNEVLQQDVFLNELNSNL--PADFKAYTVSEVATKFNIINAPKIKEYHYYFSFGAVN 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L+ + M+ A G H F + + + RTI+ + Sbjct: 125 HPFAAPFIVNEESELNIKLMKKGASLFEGEHYFHKYCTKPSAKTEFKRTIESCSIIENSI 184 Query: 183 L---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-QAQDRKECGP 232 L ++V + FL QIR + +L +G G + +E +L + DR+ Sbjct: 185 LTASFFPQKSYVLKVRGKGFLRYQIRLMMATLFELGKGNLSLQYIEDSLKEDNDRQFLRT 244 Query: 233 LAPPEGLYFDSVE 245 +AP GL +++ Sbjct: 245 IAPGSGLQLYTID 257 >gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium parvum Iowa II] gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium parvum Iowa II] Length = 283 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 98/257 (38%), Gaps = 31/257 (12%) Query: 15 YFG--WQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHALRQVAHFDL-- 66 + G +Q+ +I+G I KA+ + + + GRTD GVH+ +L Sbjct: 4 FQGIAFQKDDKIPTIEGEIYKALLQLRLIKDIDSCDLVRCGRTDRGVHSAGNYISVNLRT 63 Query: 67 -VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P + LN L I ++ V F ARF R Y Y PL Sbjct: 64 RAKNLEPYNYMEMLNGVL--PWDIRVIGYCEVRPDFSARFDCEYRLYKYFF-----PLNH 116 Query: 126 EKGRAWLIPK--SLDCENMRIAAQHLVGRHDFTTFRSIH---CQASSPIRTIDHFDVNSF 180 E+ + PK M +AA+ +G HD+ F + + + IRTI FD+N Sbjct: 117 ERTKISKFPKIPPEQVPLMNVAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDINFV 176 Query: 181 GNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP----L 233 + +FL Q+R +G L +G K+ + + L ++K + Sbjct: 177 DENRTFAVATIKGSAFLWHQVRLMMGILFEIGQQKFNPEVITQMLTDVEQKNIAELSFQM 236 Query: 234 APPEGLYFDSV---EYS 247 A GL EY Sbjct: 237 ATELGLVLWDCVFKEYD 253 >gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger] Length = 517 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 95/277 (34%), Gaps = 41/277 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------VTGEIVVVHGAGR 50 + Y G Y G NG +I+ + KA+ + + AGR Sbjct: 109 IALKFAYLGQRYNGL-EHANGNATPLPTIEEEMYKALRKTRETKPYYINWDGCEYSKAGR 167 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIR 109 TD GV A QV R + LN L + I +L + F ARFS Sbjct: 168 TDRGVSAFGQVIGI---RVRNELPYVSMLNKVL--PEDIRVLAWCPRPPEGFDARFSCGE 222 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKS------------LDCENMRIAAQHLVGRHDFTT 157 R Y Y T+ A G + +P+ LD E MR AA++ G HDF Sbjct: 223 RHYKYFF-TQPAFSP-TPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHDFRN 280 Query: 158 FRSIH--CQASSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 F + Q S R I + + +FL Q+R V L LVG G Sbjct: 281 FCKLDVTKQIESFYRDIFQSSAAPLPTAAQVYVFHLEGSAFLWHQVRHMVNVLFLVGQGL 340 Query: 213 WTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 + ++ L RK +A L Y Sbjct: 341 EEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDCIYP 377 >gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895] gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895] Length = 432 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 88/245 (35%), Gaps = 43/245 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK+ +++G+I +A+ + + GRTD G Sbjct: 84 IALKFAYLGWNYNGLAIQKDPTPLPTVEGTILEAMNKCRMVPSMVPQDYKFSRCGRTDKG 143 Query: 55 VHALRQVAHFDLVREWVPVI------------LCKALNAYLKISDTISILNLS-IVDKQF 101 V A+ QV + P LN L D I I + K F Sbjct: 144 VSAMNQVISLRVRSNLTPQEQEDPANDAREIPYIHILNQLL--PDDIRISAICLRPPKGF 201 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS R Y Y LD M AA+ G HDF F + Sbjct: 202 DARFSCKYRHYKYL----------------FNKSGLDLSKMEEAARLYEGEHDFRNFCKL 245 Query: 162 H--CQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 Q ++ RTI + + G++ ++ +FL Q+R + +L +VG G T + Sbjct: 246 DGSKQITNFKRTILSAKILHVDGDMYCFDLLGSAFLWHQVRCMMANLFIVGQGLEPLTLI 305 Query: 219 EKALQ 223 L Sbjct: 306 NNLLD 310 >gi|170050837|ref|XP_001861491.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872293|gb|EDS35676.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 476 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 112/278 (40%), Gaps = 47/278 (16%) Query: 1 MIRYCMIIEYNGSGYF--GWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHA 57 M RY + + Y G+ + G R ++ S++G++E A+ + + RTD+GVHA Sbjct: 1 MNRYLINLSYVGTHFRDNG--RLEDPQSVEGALEIALKKFRPVNEFKIKLSSRTDAGVHA 58 Query: 58 LRQVAHFDLVRE----WVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSY 112 L H DL R + P L + LN I +L V FHAR A R+Y Sbjct: 59 LNNAVHVDLERYNGKPYEPDKLTQGLNRTFGSQKIPIRVLRTRHVPLTFHARLCAKSRTY 118 Query: 113 LYRI---------------ITRQAPLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFT 156 LYR+ + E R + I K+ D + ++ AA G HDF Sbjct: 119 LYRVGVLRPEFCDDPEQIHPFTRFIPIDEHDRCYFIANKNFDPDRLKRAAALCEGYHDFR 178 Query: 157 TFRSIHC------QASSPIRTIDHFDVNS---------------FGNLIEIRVVARSFLH 195 TF +I + +R I+ V + +IR+ ARSFL+ Sbjct: 179 TFMAIARGNLWQQMPTYTLRRIERITVERGSSMASAFSRKLADRYYEYWDIRIKARSFLY 238 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 Q+R VG+ + + T D+++ L + Sbjct: 239 NQVRRMVGAWIAAAEARITERDVQQMLTVPAKSSWSST 276 >gi|308235466|ref|ZP_07666203.1| tRNA pseudouridine synthase A [Gardnerella vaginalis ATCC 14018] Length = 173 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 19/173 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------IVVVHGAGRTDSG 54 +R + + Y+G ++GW RQ N ++QG++E A++ V + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGDFYGWARQPNLRTVQGTLEDALYKVLRVHDGDSCFPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREW-------VPVILCKALNAYLK--ISDTISILNLSIVDKQFHARF 105 VHA QV H D+ + + KAL L+ + ISI ++SI F ARF Sbjct: 61 VHASYQVCHLDVEDDILQNCVGHTNLTPVKALEYRLRGVLPKDISIHSVSIAPSGFDARF 120 Query: 106 SAIRRSYLYRII---TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 SA+ R+Y+YRI R+ +G I LD +M AAQ +VG HDF Sbjct: 121 SALDRTYVYRISDAANRENLDPRMRGFVLQIDYDLDVNSMNQAAQMIVGLHDF 173 >gi|24648455|ref|NP_650899.1| CG4159, isoform A [Drosophila melanogaster] gi|7300636|gb|AAF55785.1| CG4159, isoform A [Drosophila melanogaster] Length = 410 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 69/263 (26%), Positives = 105/263 (39%), Gaps = 29/263 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E +A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELD----LEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIR 170 + T EK + I L + ++ + G +F F S S R Sbjct: 187 LPTVAFAPFEEKVDDVHDTFRISPEL-LQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKR 245 Query: 171 TIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F + + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 246 FIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTE 305 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + + P+AP GL D+V Y Sbjct: 306 E--RLDLPMAPGLGLVLDTVHYE 326 >gi|257387360|ref|YP_003177133.1| tRNA pseudouridine synthase A [Halomicrobium mukohataei DSM 12286] gi|257169667|gb|ACV47426.1| tRNA pseudouridine synthase [Halomicrobium mukohataei DSM 12286] Length = 263 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 95/252 (37%), Gaps = 34/252 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M Y I Y+G Y G+QRQ + +++G + + + AGRTD+GV Sbjct: 1 MRAYR--IAYDGQPYHGFQRQPDVETVEGELLATLDRLGVTAGDVPAGYAAAGRTDAGVS 58 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL Q F+ P ++ ++ + + V FHA A R Y+Y + Sbjct: 59 ALAQTVAFEAPEWLSPAAF------NSELPASVRVWASADVPDDFHATHDAREREYVYYL 112 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A E+ + L G HD F ++ S +R + D Sbjct: 113 Y------APERHDDRARRAA----------DALSGEHD---FHNLTPDDSGTVRAL-SID 152 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLA 234 + G + R+ A F +R VG + + G + +++ L ++ D A Sbjct: 153 LTREGEFLVCRLRAGGFCRQLVRRVVGLVDEIRRGDAPLSKVDRVLGSKPIDGAAGVGPA 212 Query: 235 PPEGLYFDSVEY 246 P L +V+Y Sbjct: 213 SPTPLVLVAVDY 224 >gi|157106978|ref|XP_001649570.1| pseudouridylate synthase [Aedes aegypti] gi|108879706|gb|EAT43931.1| pseudouridylate synthase [Aedes aegypti] Length = 467 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 103/272 (37%), Gaps = 46/272 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ +I+ + A+ V E H GRTD GV A Sbjct: 76 ILLRFYYLGWDYQGYASQEDSARTIEHLLFNALTRVCLIENRETSNYHRCGRTDKGVSAF 135 Query: 59 RQVA------HFDLVREWVPVILCKALNA----YLKISDTIS-ILNLSIVDKQFHARFSA 107 QV F + P + +N + I + + +V+ + ARF Sbjct: 136 HQVVSLDVRSKFAPENQLEPESIANEINYCQLLNRVLPQDIRCVAWMPMVNPNYSARFDC 195 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQA 165 R+Y Y + SL+ + M+ A LVG HDF + Sbjct: 196 RSRTYRY----------------FFPRGSLNIDAMKEACTFLVGAHDFRNLCKMDVGNGV 239 Query: 166 SSPIRTIDHFDVN--------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + R I + + S +++ + + ++FL Q+R + L LVG+GK + Sbjct: 240 VTFTRRISYVSIEDSQSDAKESPYDMLYLELRGKAFLWHQVRCIMAVLFLVGEGKEEPSV 299 Query: 218 LEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 +++ L ++ C P LA L EY Sbjct: 300 VKELLDV-NKNPCKPQYSLASDLPLNLYECEY 330 >gi|195569417|ref|XP_002102706.1| GD20050 [Drosophila simulans] gi|194198633|gb|EDX12209.1| GD20050 [Drosophila simulans] Length = 411 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 69/263 (26%), Positives = 105/263 (39%), Gaps = 29/263 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E +A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELD----LEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIR 170 + T EK + I L + ++ + G +F F S S R Sbjct: 187 LPTVAFASFEEKVDDVHDTFRISPEL-LQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKR 245 Query: 171 TIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F + + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 246 FIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTE 305 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + + P+AP GL D+V Y Sbjct: 306 E--RLDLPMAPGLGLVLDTVHYE 326 >gi|194899730|ref|XP_001979411.1| GG15313 [Drosophila erecta] gi|190651114|gb|EDV48369.1| GG15313 [Drosophila erecta] Length = 410 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 104/263 (39%), Gaps = 29/263 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L + +A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEDLD----LEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC----QASS 167 + T EK + I L + ++ + G +F F S + Sbjct: 187 LPTMAFAPFEEKVEDLHDTFQISPEL-LQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKR 245 Query: 168 PIRTIDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I + D IE +V +SF+ QIR VG + G T+ LE+AL Sbjct: 246 FIMSFTSSDPFRSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTE 305 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + + P+AP GL D+V Y Sbjct: 306 E--RLDLPMAPGLGLVLDTVHYE 326 >gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 548 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 66/292 (22%), Positives = 95/292 (32%), Gaps = 52/292 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---VTGEI-------------- 42 + Y G Y G + +++ + KA+ ++ E Sbjct: 117 IALKFAYLGQAYNGLEHTNGNTTPLPTVEEVLWKALRRTRLISPETTSDLEPSDRAERVP 176 Query: 43 ----------VVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 AGRTD GV A QV + + LN L + I +L Sbjct: 177 MRPYHLYWDGCEYSKAGRTDKGVSAFGQVIGLRVRT--DEMNYINVLNRVL--PEDIRVL 232 Query: 93 NLSI-VDKQFHARFSAIRRSYLYRIITRQAPLA-----LEKG-------RAWLIPKSLDC 139 F ARFS R Y Y + RA LD Sbjct: 233 AWCPNPPPGFDARFSCRERRYKYFFTNPAFSPTPGSIGFQNRAQNGNGPRAEFREGWLDI 292 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 E MR AA+H G HDF F + Q + R I H S + + +FL Q Sbjct: 293 EAMREAAKHFEGSHDFRNFCKLDTNKQIDNFERIIHHSISQSIPQVYSFNLHGSAFLWHQ 352 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGLYFDSVEYS 247 +R V L LVG G + + + + L A++ RK +A L + Sbjct: 353 VRHMVAILFLVGQGLESPSIVPELLDVAKNPRKPTYAMADDAPLVLWDCIFP 404 >gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8] gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8] Length = 296 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 93/269 (34%), Gaps = 41/269 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-------TGEIVVVHGAGRT 51 + + Y G Y G QK+ +++G + A+ E GRT Sbjct: 46 RKIALKFCYGGWDYGGLAIQKDRTPLPTVEGKLFGALVRARLVDPKGGLEGCGWERCGRT 105 Query: 52 DSGVHALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GV A QV + E +P +N +L D I IL S VD F +R+S Sbjct: 106 DRGVSAAGQVISLWVRSALSQEELLPHPFTYMINRHL--PDPIKILAWSPVDLSFSSRYS 163 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R Y Y + P LD MR A +L G H+F I Sbjct: 164 CTWRHYKY----------------FFPPVGLDIPAMRAACAYLPGTHEFRNLCKIDPTKQ 207 Query: 167 -SPIRT------IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 R I H D ++ G + + SFL+ +R+ +G L +G T L Sbjct: 208 LDQFRRDILHASISHVDASNPGGMHVFDLKGSSFLYHMVRNIMGVLLSIGARLEPPTLLP 267 Query: 220 KALQ-AQDRKECGPLAPPEGLYFDSVEYS 247 + A + +A L Y Sbjct: 268 SLMNVAPGCRPEYMMADALPLTLWDCGYP 296 >gi|47214586|emb|CAG00940.1| unnamed protein product [Tetraodon nigroviridis] Length = 412 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 92/286 (32%), Gaps = 60/286 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 75 VALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQDRQSSNYHRCGRTDKGVSAF 134 Query: 59 RQVAHFDLVREW-----------------------VPVILCKALNAYLKISDTISILNLS 95 QV + + K LN L I I N + Sbjct: 135 SQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKMLNRVL--PHDIRIWNWA 192 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 + F ARF R+Y Y + SL+ E M AA+ G HDF Sbjct: 193 PAAEGFSARFDCQSRTYRY----------------YFPRGSLNVELMADAAERYEGTHDF 236 Query: 156 TTFRS--IHCQASSPIRTI----------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 + RTI +H ++ V +FL+ Q+R + Sbjct: 237 RNLCKMDVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMA 296 Query: 204 SLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L L+G + + L Q RK +A L + Sbjct: 297 LLLLIGQKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFE 342 >gi|156088547|ref|XP_001611680.1| tRNA pseudouridine synthase A family protein [Babesia bovis] gi|154798934|gb|EDO08112.1| tRNA pseudouridine synthase A family protein [Babesia bovis] Length = 248 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 93/250 (37%), Gaps = 44/250 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVH----GAGRTDSGVHA 57 + M Y G+GY G Q + +++G + +A+ L V++ GRTD VHA Sbjct: 12 KLLMDFSYIGTGYHGLAYQSDEPNTVEGHLFRALSLANVASDVLNNGYERCGRTDRDVHA 71 Query: 58 LRQVAHFDLVREWVP-------------------VILCKALNAYLKISDTISILNLSIVD 98 L A F KA+N +L I + + V Sbjct: 72 LHNYASFFPDPCPPNSPCSTVSPDERGVGPCYRINTFTKAINKHL--PRGIRVNWVKHVP 129 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 F +R + R Y Y S+D ++ A +H +G+H+F F Sbjct: 130 DDFSSRRNCTFRVYKYFFQLG----------------SMDLSLIQDACRHFLGQHNFNQF 173 Query: 159 RSIH-CQASSPIRTIDHFDVNSFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 TI F+V + L+ + + R+FL Q+R +G L VG+G Sbjct: 174 CKTDNRNPKDSHGTIYSFEVERYNELLCVATICGRAFLWHQVRCMMGVLFKVGEGIIPGL 233 Query: 217 DLEKALQAQD 226 ++ L+ + Sbjct: 234 KVKWLLEHPE 243 >gi|74227733|dbj|BAE35706.1| unnamed protein product [Mus musculus] Length = 219 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 24/197 (12%) Query: 53 SGVHALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 G+HAL AH D+ R + P ++ KALN +LK I +L V FHAR +A Sbjct: 2 PGLHALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLKHP-AIRVLKAFRVPNDFHARHAA 60 Query: 108 IRRSYLYRIITRQAPL----ALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIH 162 R+Y YR+ T + E+ W + + LD M+ AAQHL+G HDF+ F+S Sbjct: 61 TSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAG 120 Query: 163 CQASSPIRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVG 209 ++ +RT+ V+ + ++SFL+ Q+R L VG Sbjct: 121 SPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVG 180 Query: 210 DGKWTSTDLEKALQAQD 226 G T ++ L++QD Sbjct: 181 LGILAPTQVKVILESQD 197 >gi|195353947|ref|XP_002043463.1| GM23177 [Drosophila sechellia] gi|194127604|gb|EDW49647.1| GM23177 [Drosophila sechellia] Length = 411 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 105/263 (39%), Gaps = 29/263 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E +A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELD----LEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIR 170 + T E+ + I L + ++ + G +F F S S R Sbjct: 187 LPTVAFASFEEQVEDVHDTFRISPEL-LQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKR 245 Query: 171 TIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F + + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 246 FIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTE 305 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + + P+AP GL D+V Y Sbjct: 306 E--RLDLPMAPGLGLVLDTVHYE 326 >gi|322786132|gb|EFZ12740.1| hypothetical protein SINV_14818 [Solenopsis invicta] Length = 444 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 99/272 (36%), Gaps = 46/272 (16%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q+ N ++I+ + A+ + E H GRTD GV + Sbjct: 94 ILLKFYYLGWDYHGFTVQEDNCNTIEHHLFAALLKSCCIESRESANYHRCGRTDKGVSSF 153 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ + P CK LN L I + V F ARF Sbjct: 154 SQVISLDIRSKLAPEDQGNLSNELPYCKMLNRLL--PTNIRCVAWCPVASNFSARFDCKY 211 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC------ 163 R Y Y + +LD + M AA+++VG HDF + Sbjct: 212 RRYKY----------------FFPRGNLDIDAMNKAAKYVVGDHDFRNICKMDVANGIIN 255 Query: 164 ------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 A + ++ ++ E+ + +++FL QIR +G L LVG K Sbjct: 256 FKRTVIDAKVSFVNEQSMEKSTGYDMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEV 315 Query: 218 LEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 + K L + +K +A L +Y Sbjct: 316 ILKLLDTETCPQKPQYNMAHQVPLNLWHCDYE 347 >gi|281362146|ref|NP_001163664.1| CG4159, isoform B [Drosophila melanogaster] gi|272477072|gb|ACZ94960.1| CG4159, isoform B [Drosophila melanogaster] Length = 442 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 69/263 (26%), Positives = 105/263 (39%), Gaps = 29/263 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 105 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 164 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E +A NA L I + + V K F+A+ R+Y Y Sbjct: 165 SAARQVCSVKLPEELD----LEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 218 Query: 116 IITRQAPLALEK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIR 170 + T EK + I L + ++ + G +F F S S R Sbjct: 219 LPTVAFAPFEEKVDDVHDTFRISPEL-LQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKR 277 Query: 171 TIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F + + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 278 FIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTE 337 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + + P+AP GL D+V Y Sbjct: 338 E--RLDLPMAPGLGLVLDTVHYE 358 >gi|195113035|ref|XP_002001075.1| GI22173 [Drosophila mojavensis] gi|193917669|gb|EDW16536.1| GI22173 [Drosophila mojavensis] Length = 401 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 25/260 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E K L + I I + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELDLEAFNKDL------PEQIRIFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLD-CENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTID 173 + T ++ ++ E + + G +F F S S R I Sbjct: 187 LPTIAFAAFDDQHDQETYRIPIERLEKVSATLKLYEGTKNFHNFTSKKNFLDPSAKRFIM 246 Query: 174 HFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F ++ + ++V +SF+ QIR VG + G T+ LE+AL + Sbjct: 247 SFTCSTPFLSPQSVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLERALTEE-- 304 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + P+AP GL D+V Y Sbjct: 305 RLDLPMAPGLGLVLDTVHYE 324 >gi|327311135|ref|YP_004338032.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20] gi|326947614|gb|AEA12720.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20] Length = 250 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 37/243 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++ Y+GS ++G+ + S++ ++ +A+ + G RTD GV AL V Sbjct: 2 IAYLVAYDGSLFYGFT--GHERSVEPALARALGPLLG------RGSRTDPGVSALGNVV- 52 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R P+ A ++ + + + V + F+ R A R+Y+Y Sbjct: 53 --VARSLKPLGQINA-----ELPRGVWVWGYAEVPEGFNPR-RARARTYVY--------F 96 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A +G D +R AA VG HD+ F + TI +V G Sbjct: 97 APYRGE--------DLGLVREAASLFVGTHDYRNFAK---GVRDAVTTIYSIEVEDRGAY 145 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 IEI + F + +R V +L VG G D+ + L++ P AP EGL S Sbjct: 146 IEIAFRGKGFRNKMLRKIVWALLAVGRGVLGIDDVRRLLESGGGGP-VPSAPAEGLVLLS 204 Query: 244 VEY 246 ++Y Sbjct: 205 IDY 207 >gi|303391559|ref|XP_003074009.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC 50506] gi|303303158|gb|ADM12649.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC 50506] Length = 317 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 33/223 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA- 62 + I Y+G Y G Q ++ G +E A+ TG + AGRTD+GV A+ V Sbjct: 37 VALRISYDGRRYSGMAPQSGKETVGGHLENAL-KFTGLGEKLVYAGRTDAGVSAISMVVS 95 Query: 63 -------------HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 + ++ LN++L I ++ + V F ARF+ I+ Sbjct: 96 GVFISRIEMPNRSYVVTESDYKEYKYDMILNSHL--PSDIRVIGWAPVPDTFSARFTCIQ 153 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y Y + + LD + MR A + +F F + + Sbjct: 154 RQYRY----------------YFHKEDLDADRMREMASRIKKMENFYYFSKHSDKNARYE 197 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 R +D + G++ + + AR+FLH +R V +++ G G+ Sbjct: 198 RKLDECRIVDEGDVYYLDIRARAFLHNMVRKIVWAIQKAGKGE 240 >gi|24215440|ref|NP_712921.1| pseudouridylate synthase [Leptospira interrogans serovar Lai str. 56601] gi|42559814|sp|Q8CXS6|TRUA_LEPIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24196565|gb|AAN49939.1| pseudouridylate synthase [Leptospira interrogans serovar Lai str. 56601] Length = 207 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 7/193 (3%) Query: 60 QVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F R +LNA +SILN++ VD+ F +RFS R Y Y I+ Sbjct: 1 MIVNFKTQRVIQNFSKFLLSLNA--ITDSGLSILNMTEVDENFDSRFSCNSREYEYWILN 58 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDV 177 + P K R + +D + + L G HDF + + + S +RTI + Sbjct: 59 TKYPRPTWKNRTFWYQHRIDVPRLEAELELLKGEHDFRSLAKVASLKGRSTVRTILDVKL 118 Query: 178 NSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 L+++++ A FLH IR G+L + +GK T++ + L ++DR G Sbjct: 119 ERSLELEGLLKVKIRANGFLHNMIRILTGTLLEISNGKRKDTNVLEILSSKDRTIAGITL 178 Query: 235 PPEGLYFDSVEYS 247 PP GLYF Y Sbjct: 179 PPYGLYFIRAYYD 191 >gi|224066589|ref|XP_002302151.1| predicted protein [Populus trichocarpa] gi|222843877|gb|EEE81424.1| predicted protein [Populus trichocarpa] Length = 465 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 104/304 (34%), Gaps = 77/304 (25%) Query: 2 IRY-CMIIEYNGSGYFGW--QRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDS 53 RY + + Y G ++G+ + Q + +++ I KA+ + + GRTD Sbjct: 92 RRYVALKVMYFGQRFYGFSLEAQMD-PTVESEIFKALETTRLLIGDRKEIQYSRCGRTDK 150 Query: 54 GVHALRQVAHFDLVREWV----------------------PVILCKALNAYLKISDTISI 91 GV A+ QV L + + + LN L I I Sbjct: 151 GVSAVGQVIALYLRSKLKDIDAHNKHSGETVPEEQDGQPGEIDYVRVLNGVL--PKDIRI 208 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + V F ARFS + R Y Y +L+ M A + L+G Sbjct: 209 VGWCPVPSDFSARFSCLSREYKYFFWND----------------NLNLLVMETAGKKLIG 252 Query: 152 RHDFTTFRSIHC-QASSPIRTIDHFDVN--------------------------SFGNLI 184 HDF F + + + R + F+++ L Sbjct: 253 EHDFRNFCKMDAVKVHNYRRNVMSFEISPCDMSHSSGMGSVKWMITKPSIRTRFEGHQLY 312 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFDS 243 I++ +FL Q+R V L ++G G + ++ L + RK +AP L S Sbjct: 313 AIKIKGSAFLWHQVRCMVAVLFMIGQGLESPEVIDALLDTRTLRKPQYLMAPEIPLVLLS 372 Query: 244 VEYS 247 E+ Sbjct: 373 CEFE 376 >gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp. lyrata] gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp. lyrata] Length = 443 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 95/279 (34%), Gaps = 52/279 (18%) Query: 3 RY-CMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGV 55 RY + I Y G ++G+ + SI+ + KA+ + GRTD GV Sbjct: 90 RYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGV 149 Query: 56 HALRQVAHFDLVRE------------------WVPVILCKALNAYLKISDTISILNLSIV 97 + QV L + LN L D I ++ S Sbjct: 150 SSTGQVIALFLRSRLKSPPGDSKAQVNGKTGERPEYDYVRVLNRAL--PDDIRVIGWSPA 207 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 FHARFS R Y Y ++L+ M IA + +G HDF Sbjct: 208 PVDFHARFSCYAREYKYFFW----------------RQNLNLSAMDIAGKKFIGEHDFRN 251 Query: 158 FRSIH-CQASSPIRTIDHFDVN------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 F + R + F+V+ L + +FL QIR V L ++G Sbjct: 252 FCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQ 311 Query: 211 GKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 G + ++ L + RK LA L + E+ Sbjct: 312 GVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFE 350 >gi|255726904|ref|XP_002548378.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404] gi|240134302|gb|EER33857.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404] Length = 437 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 88/277 (31%), Gaps = 52/277 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M Y G Y G Q +++ I K + V E V GRTD Sbjct: 73 MRFVAFKFAYLGWNYNGLAFQLEPTPLPTVEEIILKTLAKVKLIKEPIEEVKFSRCGRTD 132 Query: 53 SGVHALRQVAHFDLVREWV------------PVILCKALNAYLKISDTISILNLS-IVDK 99 GV A+ QV +L V LNA L I + ++ + Sbjct: 133 KGVSAMNQVISIELRSNLSKEDQANPELDDKEVDYLSILNANL--PSDIKVHSICLRPPE 190 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS I R Y Y ++LD + M A G HDF F Sbjct: 191 DFDARFSCISRHYRYI----------------FKKQNLDIDLMNQGASLYQGIHDFRNFC 234 Query: 160 SIH--CQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + Q ++ R I + + + + +FL Q+R V L +G G Sbjct: 235 KLDGSKQITNFQREIYSSKILHLHDDYYCFDLKGSAFLWHQVRCMVAILFTIGQGLEKPE 294 Query: 217 DLEKALQAQDRKECGPLAP----PE--GLYFDSVEYS 247 + + + + P P L E+ Sbjct: 295 IVTELMDMEK----YPTKPQYEMAHDIPLVLYDCEFP 327 >gi|195498243|ref|XP_002096440.1| GE25055 [Drosophila yakuba] gi|194182541|gb|EDW96152.1| GE25055 [Drosophila yakuba] Length = 410 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 104/263 (39%), Gaps = 29/263 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVV------VHGAGRTDSGV 55 +++ Y G+ ++G QR +I+ + K + +T E A RTD GV Sbjct: 73 AILLSYCGANFYGMQRNPGMQTIEEELFKVMLKHKWITEESFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E +A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELD----LEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIR 170 + T EK + I L + ++ + G +F F S S R Sbjct: 187 LPTVAFASFEEKVEDLHDTFQISPEL-LQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKR 245 Query: 171 TIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F + + + V +SF+ QIR VG + G T+ LE+AL Sbjct: 246 FIMSFTSSEPFRSPQGIEFVTLNVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTE 305 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + + P+AP GL D+V Y Sbjct: 306 E--RLDLPMAPGLGLVLDTVHYE 326 >gi|41056053|ref|NP_956361.1| tRNA pseudouridine synthase 3 [Danio rerio] gi|29436973|gb|AAH49516.1| Zgc:56653 [Danio rerio] Length = 460 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 92/285 (32%), Gaps = 59/285 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 60 VALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKLIQDRQTSCYHRCGRTDKGVSAF 119 Query: 59 RQVAHFDLVREW---------------------VPVILCKALNAYLKISDTISILNLSIV 97 QV DL + K LN L I IL + V Sbjct: 120 SQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVL--PHDIRILQWAPV 177 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 + F ARF R+Y Y + LD E M AA+ G HDF Sbjct: 178 ESGFSARFDCQSRTYRY----------------YFPRGDLDLELMAEAAKRYEGTHDFRN 221 Query: 158 FRS--IHCQASSPIRTIDHFDVNS-----------FGNLIEIRVVARSFLHTQIRSFVGS 204 + RTI V L +V + L+ Q+R + Sbjct: 222 LCKMDVGNGVLQFQRTILSASVQPAQLPHPSVHNDPHQLFVFQVKGLALLYHQVRCMMAL 281 Query: 205 LKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L L+G +++ L + RK +A L + Sbjct: 282 LLLIGQKLEAPEVIDQLLDVEKNPRKPQYSMAVDYPLVLYDCHFE 326 >gi|312378112|gb|EFR24771.1| hypothetical protein AND_10418 [Anopheles darlingi] Length = 376 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 49/259 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ +I+ + A+ V E + GRTD GV A Sbjct: 75 ILLRFFYLGWDYQGFAAQEDSIETIEHHLFTALQKVCLIESRETSNYNRCGRTDKGVSAF 134 Query: 59 RQVAHFDLVREWVPVI-------------LCKALNAYLKISDTISILNLSI-VDKQFHAR 104 QV D+ + P C LN L + I L V+ + AR Sbjct: 135 HQVISIDVRSKIAPEDDQLSEDSLATELDYCGMLNRVL--PEEIRCLAWMPMVNPGYSAR 192 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IH 162 F R+Y Y + +L + M+ A +HLVG HDF + Sbjct: 193 FDCRSRTYRY----------------FFPRGNLRIDAMQEACRHLVGAHDFRNLCKMDVG 236 Query: 163 CQASSPIRTIDHFDVNSFG---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + +R+ID +++ +++ +++ ++FL Q+R + L LVGDGK Sbjct: 237 NGVVNFVRSIDECTIHASQTDSSGMGSYDMMYLQLRGKAFLWHQVRCIMAVLLLVGDGKE 296 Query: 214 TSTDLEKALQAQDRKECGP 232 T +++ L DR C P Sbjct: 297 DPTIVKELLDV-DRNPCKP 314 >gi|195391039|ref|XP_002054173.1| GJ24293 [Drosophila virilis] gi|194152259|gb|EDW67693.1| GJ24293 [Drosophila virilis] Length = 408 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 25/260 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + K + +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKVMLKHKWITEDSFEQVQIASFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E +A NA L D I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELD----LQAFNADL--PDQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDC-ENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTID 173 + T E+ L E + + G +F F S S R I Sbjct: 187 LPTIAFAAFDEQHEQETYRIPLKLQEVVNTTLKLYEGTKNFHNFTSKKNFLDPSAKRYIM 246 Query: 174 HFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F ++ + ++V +SF+ QIR VG + G T+ LE+AL + Sbjct: 247 SFTCSAPFLSPQSIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLERALTEE-- 304 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + P+AP GL D+V Y Sbjct: 305 RLDLPMAPGLGLVLDTVHYE 324 >gi|223945645|gb|ACN26906.1| unknown [Zea mays] Length = 222 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 61/218 (27%) Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHL 149 + ++ V FHAR+ ++ R+Y YR++ + EK W I + LD ++M+ A L Sbjct: 2 VTDVCCVAPDFHARYKSLERTYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSIL 61 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI----------------------- 186 VG HDF++FR+ CQA+SP+RT+D V + Sbjct: 62 VGHHDFSSFRAAGCQANSPVRTLDELSVTEVFPFMFFPSSVERSELELSNVSLVYSRKPD 121 Query: 187 ----------------------------RVVARSF---------LHTQIRSFVGSLKLVG 209 R R F L+ Q+R VG LK VG Sbjct: 122 MESSGKGSDGSCTSSVKSDFENGKDFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVG 181 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G T+ D+E+ L A+ +AP GLY +V+Y Sbjct: 182 TGDLTTADVERILDAKTVTAAPSMAPSCGLYLANVKYD 219 >gi|150400022|ref|YP_001323789.1| tRNA pseudouridine synthase A [Methanococcus vannielii SB] gi|150012725|gb|ABR55177.1| tRNA pseudouridine synthase [Methanococcus vannielii SB] Length = 265 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 93/247 (37%), Gaps = 32/247 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVHALRQ 60 Y I Y+G Y +Q Q + +++ I + + + + GRTD GV AL Sbjct: 2 YIFKIAYDG-RYS-FQSQPHRNTVCDKITDTLLECGYLKEGEIPISYGGRTDLGVSALGN 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +++ + V + L+ + I IL + + + ++ R Y Y + Sbjct: 60 YIVYNITEKPVLSRIYSKLHKH-----GIWILGFNELKELPDVKY----RHYRYILPNTG 110 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNS 179 D E M+ A++ L+G H F + SPIRTI + + Sbjct: 111 Q----------------DIELMKKASEKLIGTHSFHNLSKRDKTKNRSPIRTIYNIKIAK 154 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS-TDLEKALQAQDRKECGPLAPPEG 238 I I + +SFL +R V L VG K+ L +D + A EG Sbjct: 155 NEYFITIEIFGKSFLWNMVRKIVRLLSNVGLSKYKEFEKFIDDLLDRDVRMGVQPASAEG 214 Query: 239 LYFDSVE 245 L V+ Sbjct: 215 LILVDVK 221 >gi|289597197|ref|YP_003483893.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Aciduliprofundum boonei T469] gi|289534984|gb|ADD09331.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Aciduliprofundum boonei T469] Length = 253 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 101/243 (41%), Gaps = 35/243 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y+G+ ++G+QRQK+ +++G I KA+ + + + A RTD GV AL V Sbjct: 2 LLKFAYDGTRFYGYQRQKDVPTVEGEILKALENMGIK--NLKSASRTDRGVSALGNVIWI 59 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L LNA LK I S + + R+ A R Y Y ++ Sbjct: 60 KTD--IDGKELIGRLNANLK-----HIYFHSFANLDINPRY-ARIRWYRYHLLDMGQ--- 108 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 D + ++ AA G HDF F + + + I DVN G++I Sbjct: 109 -------------DMDRLKEAAMIFQGEHDFRNFTRVR---KNTVIEIKKIDVNKRGSII 152 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I R++L IR V +++ GK ++ RK G +APPE L + Sbjct: 153 TIDFYGRNYLWNLIRRIVAAMETYSLGKEFGQEIFTI-----RKNFG-IAPPEPLILMDI 206 Query: 245 EYS 247 +Y Sbjct: 207 QYD 209 >gi|68490066|ref|XP_711154.1| likely tRNA pseudouridine synthase [Candida albicans SC5314] gi|68490103|ref|XP_711136.1| likely tRNA pseudouridine synthase [Candida albicans SC5314] gi|46432414|gb|EAK91897.1| likely tRNA pseudouridine synthase [Candida albicans SC5314] gi|46432433|gb|EAK91915.1| likely tRNA pseudouridine synthase [Candida albicans SC5314] Length = 489 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 57/277 (20%), Positives = 85/277 (30%), Gaps = 52/277 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M Y G Y G Q +++ KA+ V E V GRTD Sbjct: 129 MRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTD 188 Query: 53 SGVHALRQVAHFDLVREWVPVI------------LCKALNAYLKISDTISILNLS-IVDK 99 GV A+ QV ++ LNA L I + ++ Sbjct: 189 KGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANL--PSDIKVHSICLRPPP 246 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R Y Y + LD E M A+ G HDF F Sbjct: 247 DFDARFSCLSRHYRYI----------------FRKQDLDIELMNQGAKLYQGIHDFRNFC 290 Query: 160 SIH--CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + Q ++ +R I + + + +FL Q+R V L +G + + Sbjct: 291 KLDGSKQITNFVREIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAILFTIGQSLESPS 350 Query: 217 DLEKALQAQDRKECGPLAP----PE--GLYFDSVEYS 247 + + P P L E+ Sbjct: 351 IITDLMD----TNKFPTKPQYEMAHDIPLVLYDCEFP 383 >gi|326429850|gb|EGD75420.1| hypothetical protein PTSG_06496 [Salpingoeca sp. ATCC 50818] Length = 460 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 93/291 (31%), Gaps = 63/291 (21%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVH 56 + + + Y G Y G Q + +I+ + +A+ + GRTD GV Sbjct: 61 RKIALKVAYLGEKYHGLAIQISAPDTIEAHLFEALEKSKLVEDIKTADYSRCGRTDKGVS 120 Query: 57 ALRQVAHFDLVREW-----------------------VPVILCKALNAYLKISDTISILN 93 A QV + + K LN L I +++ Sbjct: 121 AYCQVVSLVVRSNLNECRGFISKPSVEPAKKKAKATVDELDYTKILNGLL--PPEIRVVD 178 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 VD F ARFS R Y Y + ++D M+ A HLVG H Sbjct: 179 WGAVDTDFSARFSCNARHYKY----------------FFHRANMDTAAMQAACDHLVGEH 222 Query: 154 DFTTFRSIH--CQASSPIRTIDHFDVNS-------------FGNLIEIRVVARSFLHTQI 198 DF F ++ +RTI V +L E ++ +FL Q+ Sbjct: 223 DFRNFCKADVAGGVTNFVRTIKEARVCPAEIGDASVHSSDGDFDLWEFNIIGHAFLWHQV 282 Query: 199 RSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 R + L +VG G + L K +A L ++ Sbjct: 283 RCMMAVLFMVGRGDEQPGMVRHLLNIDECTHKPQYVMASELPLVLYDCKFD 333 >gi|300710278|ref|YP_003736092.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3] gi|299123961|gb|ADJ14300.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3] Length = 266 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 100/253 (39%), Gaps = 34/253 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHA 57 +R I Y+G+ Y+G+QRQ + +++G + A+ + + AGRTD GV A Sbjct: 1 MR-AFRIAYDGAPYYGFQRQPDVETVEGVLFDALDRLVTFEGEKPAGYAAAGRTDRGVSA 59 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L Q F+ P ++ T+ + FHAR+ A R+Y Y + Sbjct: 60 LAQTVAFEAPEWLTPAAF------NSELPGTVRAWASADAPDDFHARYDARSRTYAYYLH 113 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 AP A D E +R L G HD F ++ + RTI Sbjct: 114 ---APGA-------------DVEAIRGVLSRLSGTHD---FHNLTPEDGPTTRTITRARA 154 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR---KECGPLA 234 N G + + + A FL +R V + V + T +E+ L +++R E A Sbjct: 155 NREGPFVVLTLRADGFLKRLVRRVVTLVVDVLRSERDPTYVERVL-SKERLSGPEGIASA 213 Query: 235 PPEGLYFDSVEYS 247 P E L Y Sbjct: 214 PSEPLVLVHTAYD 226 >gi|171689408|ref|XP_001909644.1| hypothetical protein [Podospora anserina S mat+] gi|170944666|emb|CAP70777.1| unnamed protein product [Podospora anserina S mat+] Length = 635 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 93/324 (28%), Gaps = 86/324 (26%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAI-----------FLVTGEIVVVHGAGR 50 + + Y G Y G++ N SI+ + KA+ + GR Sbjct: 133 IALKLSYLGKNYGGFEHSGYSNVPSIEEELWKALVKGCLITPADPSKIDFAPFEYSKCGR 192 Query: 51 TDSGVHALRQVAHFDLVREWVPVI------------------------------------ 74 TD GV A QV + P Sbjct: 193 TDRGVSAFGQVISIRVRSNRPPSKSEQPAEEDVVMEGTPEQNNTPQLPGKKQQQNPQKEW 252 Query: 75 --------LCKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLAL 125 K LN L I +L + + F ARFS R Y Y L Sbjct: 253 EDIVDEINYPKVLNRLL--PPDIKVLAWAPTLPEGFSARFSCYERQYRYFFTNPSMAPTL 310 Query: 126 EKG--RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNS-- 179 ++ LD M+ AA++ G HDF F + Q +S R I D+ Sbjct: 311 LAPGEKSGW----LDIAAMKKAAKYFEGLHDFRNFCKVDGGKQITSFQRRIFECDIEEVE 366 Query: 180 --------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 G + V +FL QIR V + VG G + + L + Sbjct: 367 GQDLGVVNFWGGEKKGKVYYFHVRGSAFLWHQIRHMVAIVFNVGQGLERPEVVRELLDVE 426 Query: 226 D--RKECGPLAPPEGLYFDSVEYS 247 RK +A L + Sbjct: 427 RNGRKPGYIMAEEVPLVLWDCVFP 450 >gi|94502328|ref|ZP_01308801.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451115|gb|EAT14067.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 192 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 2/188 (1%) Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHF+ + + + + I I+N+ V K+ HARF+AI R Y YRI Sbjct: 1 MFAHFEFYEKKILLYRNFLFKFNSFLPLNIKIINIFTVKKKIHARFTAISRVYEYRISLG 60 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P +L+ WL K + + A+ L D+++F C + I I + + Sbjct: 61 KNPFSLDISWQWLSKKKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHI 120 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N++ + A +L +RS VG+L +G GK T D L A+DR AP +GL Sbjct: 121 KNNILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRNII--SAPAKGL 178 Query: 240 YFDSVEYS 247 + + Y Sbjct: 179 FLTKINYP 186 >gi|18399149|ref|NP_564438.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana] gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana] gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 446 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 94/279 (33%), Gaps = 52/279 (18%) Query: 3 RY-CMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGV 55 RY + I Y G ++G+ + SI+ + KA+ + GRTD GV Sbjct: 90 RYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGV 149 Query: 56 HALRQVAHFDLVRE------------------WVPVILCKALNAYLKISDTISILNLSIV 97 + QV L + LN L D I ++ S Sbjct: 150 SSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRAL--PDDIRVIGWSPA 207 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 FHARFS R Y Y ++L+ M A + +G HDF Sbjct: 208 PIDFHARFSCYAREYKYFFW----------------RQNLNLSAMDFAGKKFIGEHDFRN 251 Query: 158 FRSIH-CQASSPIRTIDHFDVN------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 F + R + F+V+ L + +FL QIR V L ++G Sbjct: 252 FCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQ 311 Query: 211 GKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 G + ++ L + RK LA L + E+ Sbjct: 312 GVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFE 350 >gi|125556371|gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group] gi|125598125|gb|EAZ37905.1| hypothetical protein OsJ_22255 [Oryza sativa Japonica Group] Length = 417 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 112/288 (38%), Gaps = 44/288 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-------------VHGA 48 + + +++ Y+G + GWQ+Q +++QG +EK + E A Sbjct: 121 VTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVA 180 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL+QV F R+ V + A+N D + L++S V ++FH F+A Sbjct: 181 GRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINK--AAPDKLRPLHVSQVSREFHPNFAA 238 Query: 108 IRRSYLYRIITR----------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR----- 152 R YLY Q+ +E + P+S D + + L G+ Sbjct: 239 KWRRYLYIFPLDEDVKLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYK 298 Query: 153 ---HDFTTFRSIHC-------QASSPIRTIDHFDVNSFGNL---IEIRVVARSFLHTQIR 199 D RS+ + + + + D N I I +VA FL +R Sbjct: 299 MFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVR 358 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V + L ++A R+ P APP+GL V Y Sbjct: 359 VLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGYE 406 >gi|317419455|emb|CBN81492.1| tRNA pseudouridine synthase 3 [Dicentrarchus labrax] Length = 472 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 91/286 (31%), Gaps = 60/286 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 73 VALRLAYLGWSYQGFAVQENTDNTVEARLFEALLKTRLIQDRQSSNYHRCGRTDKGVSAF 132 Query: 59 RQVAHFDLVREW-----------------------VPVILCKALNAYLKISDTISILNLS 95 QV DL + K LN L I IL+ + Sbjct: 133 SQVITIDLRSTQFCGGLGVTLPENVDVRSKNKASGSELPYVKMLNRVL--PQDIRILDWA 190 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 + F ARF R+Y Y + SLD M AA+ G HDF Sbjct: 191 PAAEGFSARFDCQSRTYRY----------------YFPRGSLDVALMAEAAKRYEGTHDF 234 Query: 156 TTFRS--IHCQASSPIRTIDHFDVNS----------FGNLIEIRVVARSFLHTQIRSFVG 203 + RTI V L + +FL+ Q+R + Sbjct: 235 RNLCKMDVGNGVLQFERTILSASVKPVQPQHVSSTDQYELFMFEIKGLAFLYHQVRCMMA 294 Query: 204 SLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L L+G + + + Q RK +A L + Sbjct: 295 LLLLIGQKLEAPEIINQLMDVQSNPRKPQYSMAVDYPLVLYDCHFE 340 >gi|152964686|ref|YP_001360470.1| tRNA-pseudouridine synthase I [Kineococcus radiotolerans SRS30216] gi|151359203|gb|ABS02206.1| tRNA-pseudouridine synthase I [Kineococcus radiotolerans SRS30216] Length = 252 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 97/235 (41%), Gaps = 18/235 (7%) Query: 28 QGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQVAHFDLVRE-----------WVPVI 74 QG + A+ V + AGRTD+GVHA QVAH DL R Sbjct: 2 QGVLTAALGRVLRLDPAPRLTVAGRTDAGVHASGQVAHADLPRAVWEALPGRSDAPPAAA 61 Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLI 133 L + L L + + F ARF A+RR Y YR+ A L + Sbjct: 62 LVRRLAGVL--PPDVRVHGARPAPPGFDARFGALRRRYAYRVCDDPAGVPPLRRFDVLHH 119 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEIRVVARS 192 + LD M +AA LVG +F F + +S +RT+ + + L+ V A + Sbjct: 120 RRPLDAAAMDLAAGSLVGLREFAAFCRPR-EGASTVRTLLAYSWRRDEDGLLVADVQADA 178 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F H+ +R+ VG++ VGDG+ A R + P+GL + V Y Sbjct: 179 FCHSMVRALVGAVLAVGDGRRDVDWPRVVQDAAVRDPAVAVVGPQGLTLEEVVYP 233 >gi|255566350|ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis] gi|223536579|gb|EEF38224.1| pseudouridylate synthase, putative [Ricinus communis] Length = 443 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 111/318 (34%), Gaps = 78/318 (24%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-------------VHGA 48 + + + + Y+G + GWQ+Q +++QG +EK++ E A Sbjct: 120 VNFKIDLSYHGGSFDGWQKQPGLNTVQGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVA 179 Query: 49 GRTDSGVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV ALRQV F R+ V P + A+N+ I ++++S V + FH FSA Sbjct: 180 GRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINS--SAPGKIRVISVSEVSRVFHPNFSA 237 Query: 108 IRRSYLYRIITRQAPLA--------LEKGRAW-----------------LI--------- 133 R YLY + LE R++ + Sbjct: 238 KWRRYLYIFPINDGEDSEQSFDSEDLENLRSYEKYDEQRNGCAELTSEEHVEELITSDKD 297 Query: 134 -------PKSLDCENMRIAAQHLVGR--------HDFTTFRSIHCQASSPIRTIDHFDVN 178 P+ + Q L G+ D R++ I H Sbjct: 298 ELEGAKKPRIFSICRVNQLLQQLEGKLLSYKIFARDTKASRNVGPP---TECFIYHARAT 354 Query: 179 S-------FGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 G ++ + +VA FL +R V + L K + A R+ Sbjct: 355 EARLPCPDHGEGRKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRR 414 Query: 229 ECGPLAPPEGLYFDSVEY 246 P APP+GL V Y Sbjct: 415 ASAPPAPPDGLCLFDVGY 432 >gi|332024452|gb|EGI64650.1| tRNA pseudouridine synthase 3 [Acromyrmex echinatior] Length = 443 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 67/272 (24%), Positives = 101/272 (37%), Gaps = 46/272 (16%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q+ N +I+ + A+ + E H GRTD GV + Sbjct: 76 ILLKFYYLGWDYHGFAVQEDNTDTIEHHLFAALLKSCCIESRESSNYHRCGRTDKGVSSF 135 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ P CK LN L I + V F ARF Sbjct: 136 SQVISLDVRSRLEPENQDNLSDELPYCKILNRLL--PANIRCIAWCPVSSIFSARFDCKF 193 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASS 167 RSY Y + +LD E M AA++++G HDF + + Sbjct: 194 RSYRY----------------FFPRGNLDIEAMDKAAKYVIGDHDFRNICKMDVANGVIN 237 Query: 168 PIRTIDHFDVNSFGN----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 RT+ VNS + + E+ + +++FL QIR +G L L+G K Sbjct: 238 FKRTVMDARVNSLNDQNVEKSTGYDMCELEITSQAFLWHQIRCLMGILLLIGQRKEEPEI 297 Query: 218 LEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 + K L + +K +A L +Y Sbjct: 298 ILKLLDIETCPQKPQYNMAHQVPLNLWYCDYE 329 >gi|163784111|ref|ZP_02179057.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] gi|159880615|gb|EDP74173.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] Length = 175 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 5/173 (2%) Query: 74 ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 + + LNA L ISI V FHARFSA ++Y+Y++ T+ P R W I Sbjct: 1 KIKRYLNAVL--PRDISIKECKQVPLSFHARFSAKGKTYIYKVYTQ--PDPFMYQRGWYI 56 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSF 193 + LD EN+ A Q + + + + I F G L++ + A F Sbjct: 57 SQKLDLENIAEAVQLIKNTENLISMSKKGDYLREDV-EIREFRFKYDGFLLKFEISASHF 115 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L +R V + VG G+ T ++ L ++D +APPEGLY V Y Sbjct: 116 LRYMVRKIVAHVVHVGTGRITIDTFKQILDSKDPARALFIAPPEGLYLKEVYY 168 >gi|47097169|ref|ZP_00234734.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 1/2a F6854] gi|47014428|gb|EAL05396.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 1/2a F6854] Length = 133 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQVM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIP 134 + + A P Sbjct: 119 KIFDPFSRNFALHYP 133 >gi|52075919|dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group] Length = 495 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 112/288 (38%), Gaps = 44/288 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-------------VHGA 48 + + +++ Y+G + GWQ+Q +++QG +EK + E A Sbjct: 121 VTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVA 180 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL+QV F R+ V + A+N D + L++S V ++FH F+A Sbjct: 181 GRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINK--AAPDKLRPLHVSQVSREFHPNFAA 238 Query: 108 IRRSYLYRIITR----------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR----- 152 R YLY Q+ +E + P+S D + + L G+ Sbjct: 239 KWRRYLYIFPLDEDVKLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYK 298 Query: 153 ---HDFTTFRSIHC-------QASSPIRTIDHFDVNSFGNL---IEIRVVARSFLHTQIR 199 D RS+ + + + + D N I I +VA FL +R Sbjct: 299 MFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVR 358 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V + L ++A R+ P APP+GL V Y Sbjct: 359 VLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGYE 406 >gi|328777716|ref|XP_393954.4| PREDICTED: tRNA pseudouridine synthase 3-like [Apis mellifera] Length = 400 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 108/271 (39%), Gaps = 45/271 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ ++I+ + +A+ + E H GRTD GV + Sbjct: 57 ILLKFYYLGWDYNGFVVQESIDNTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVSSF 116 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ + P CK LN L I + V F ARF+ Sbjct: 117 SQVISLDIRSKLNPEDQYKLEDELPYCKILNRLL--PSNIRCIAWCPVPNDFSARFNCKF 174 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASS 167 R+Y Y + +L+ + M A ++++G HDF + + Sbjct: 175 RTYKY----------------FFPRGNLNIDAMNKAVKYIIGEHDFRNICKMDVANGVIN 218 Query: 168 PIRTIDHFDVN---------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 IR + + +V S ++ ++ + +++FL QIR +G L L+G+GK + + Sbjct: 219 YIRKVINAEVRMYRQDFRNISGYDMYQLIITSQAFLWHQIRCLMGVLFLIGEGKEEAEIM 278 Query: 219 EKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 + L + +K LA L EY Sbjct: 279 LELLDIENCPKKPQYNLAHEIPLNLWYCEYD 309 >gi|19074961|ref|NP_586467.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1] gi|19069686|emb|CAD26071.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1] Length = 339 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 100/259 (38%), Gaps = 47/259 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 + I Y+G Y G Q +I G +E A+ GE + AGRTD+GV A+ +A Sbjct: 61 IALKISYDGRRYSGVSPQSGRETIGGYLEYALKSTRLGEK--LVYAGRTDAGVSAIGMIA 118 Query: 63 HFDLVREWVPVILCKA--------------LNAYLKISDTISILNLSIVDKQFHARFSAI 108 L A LN +L I ++ + V F ARF+ I Sbjct: 119 SGVLTSRIEMPNRSYAVAEDDYKEYKYDVMLNNHL--PPDIRVVGWAPVPDTFSARFTCI 176 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 +R Y Y + K LD + M AA + G F F + + Sbjct: 177 QRQYRY----------------YFHKKGLDIDRMSKAASEIKGMSSFYCFSKHSDKNARY 220 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 RT+D V G+L + + AR+FLH +R V ++K G G ++ D + Sbjct: 221 ERTLDECRVVDDGDLYYLDIRARAFLHNMVRKIVWAIKKSGRG-----------ESYDVQ 269 Query: 229 ECGPLAPPEGLYFDSVEYS 247 G + P L F + Y Sbjct: 270 RIG-TSEPYPLVFCNAVYP 287 >gi|70952957|ref|XP_745611.1| tRNA pseudouridine synthase [Plasmodium chabaudi chabaudi] gi|56525989|emb|CAH74339.1| tRNA pseudouridine synthase, putative [Plasmodium chabaudi chabaudi] Length = 279 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 31/238 (13%) Query: 17 GWQRQK-NGSSIQGSIEKAIF---LVTGEIVVVHGAGRTDSG---VHALRQVAHFDLVR- 68 G QK N ++++ + + + L++ RTD G ++AL Sbjct: 1 GSAYQKDNNNTVENKLIERLHQLDLISDSNCSFSRVSRTDKGSARMNALTIRLKIKYPHL 60 Query: 69 --EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + I K LN L I I+++ V F AR + I+R+YLY Sbjct: 61 SISIIEKIYLKELNKKL---KNIQIVHIQCVPNNFDARLNCIQRTYLY------------ 105 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLIE 185 + + K+ + M AA+ +G HDF+ F S IRTI F++ N Sbjct: 106 ----FFVNKNYNIPRMNEAAKIFLGEHDFSNFCKKRKNTISFIRTIHKFEIKRIDQNFYY 161 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFD 242 ++ SFL+ QIR V SL LVG G+ D++ L+ + + +A GL Sbjct: 162 FKIKGTSFLYNQIRHMVASLFLVGKGQLDEHDIKSMLENNSVKNKNYKIADECGLLLH 219 >gi|195158909|ref|XP_002020326.1| GL13924 [Drosophila persimilis] gi|194117095|gb|EDW39138.1| GL13924 [Drosophila persimilis] Length = 409 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQ+ L E +A NA L + I + + V K F+A+ R+Y Y Sbjct: 133 SAARQICSVKLPEELD----LEAFNADL--PEQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTI 172 + T A + + I L + ++ + G +F F S S R I Sbjct: 187 LPTVAFASCEAESEQDTFRITPEL-LDRVKETLKLYEGTKNFHNFTSKKNFLDPSAKRFI 245 Query: 173 DHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 F + + ++V +SF+ QIR VG + G T+ LE+AL + Sbjct: 246 MAFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLERALTEE- 304 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 + P+AP GL D+V Y Sbjct: 305 -RLDLPMAPGLGLVLDTVHYE 324 >gi|190346281|gb|EDK38328.2| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC 6260] Length = 431 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 84/245 (34%), Gaps = 43/245 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 + Y G Y G Q +++ I +A+ + GRTD G Sbjct: 72 IALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPDPLVCNFSRCGRTDKG 131 Query: 55 VHALRQVAHFDLVREWVPVILCK------------ALNAYLKISDTISILNLSI-VDKQF 101 V A+ QV ++ + LN+ L +I I + + F Sbjct: 132 VSAMNQVISLEVRSGLTEEQRSQPGADQKEIPYITILNSLL--PPSIRITGICLNPPPGF 189 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS R Y Y LD E M AA+ G HDF F I Sbjct: 190 DARFSCSYRHYRYI----------------FRRYDLDLEAMTEAAKKYEGEHDFRNFCKI 233 Query: 162 H--CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 Q ++ RTI ++ + + +FL Q+R +G L LVG + + Sbjct: 234 DGSKQITNYGRTILSANIMPLKDDYYVFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLV 293 Query: 219 EKALQ 223 ++ L Sbjct: 294 DELLN 298 >gi|146417456|ref|XP_001484697.1| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC 6260] Length = 431 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 84/245 (34%), Gaps = 43/245 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 + Y G Y G Q +++ I +A+ + GRTD G Sbjct: 72 IALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPDPLVCNFSRCGRTDKG 131 Query: 55 VHALRQVAHFDLVREWVPVILCK------------ALNAYLKISDTISILNLSI-VDKQF 101 V A+ QV ++ + LN+ L +I I + + F Sbjct: 132 VSAMNQVISLEVRSGLTEEQRSQPGADQKEIPYITILNSLL--PPSIRITGICLNPPPGF 189 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS R Y Y LD E M AA+ G HDF F I Sbjct: 190 DARFSCSYRHYRYI----------------FRRYDLDLEAMTEAAKKYEGEHDFRNFCKI 233 Query: 162 H--CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 Q ++ RTI ++ + + +FL Q+R +G L LVG + + Sbjct: 234 DGSKQITNYGRTILSANIMPLKDDYYVFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLV 293 Query: 219 EKALQ 223 ++ L Sbjct: 294 DELLN 298 >gi|301122837|ref|XP_002909145.1| tRNA pseudouridine synthase, putative [Phytophthora infestans T30-4] gi|262099907|gb|EEY57959.1| tRNA pseudouridine synthase, putative [Phytophthora infestans T30-4] Length = 510 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 61/293 (20%), Positives = 96/293 (32%), Gaps = 63/293 (21%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFL----VTGEIVVVHGAGRTDSGV 55 M + Y G Y G+ RQ + +++ + +A+ + GRTD GV Sbjct: 72 MRAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKLIENIDDAGYSRCGRTDRGV 131 Query: 56 HALRQVAHFDLVREWVPVI-------------------------------LCKALNAYLK 84 A QV + + A + Sbjct: 132 SAFGQVVALRVRSNLPATAELLSAASIDDVRPGEKFQVRLATGEEKTLTEVDYASHINRA 191 Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + I + ++ +F ARF R Y Y + + + LD E MR Sbjct: 192 LPADIRVYAVASCRPEFSARFDCKARMYRY----------------FFVRRDLDIEKMRT 235 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG---------NLIEIRVVARSFLH 195 AAQ+LVG+HDF F I R + F++ + V R+FL Sbjct: 236 AAQYLVGKHDFRNFCRIDPNCHVFERNVRSFEIVECPGQRADDPSQQMYRCEVFGRAFLW 295 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 Q+R V L L+G G+ + + K L RK +A L + Sbjct: 296 HQVRCMVEVLFLIGSGREEPSIIPKLLDIAQTPRKPQYDMASDLPLVLHDCYF 348 >gi|115756434|ref|XP_001202324.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115938206|ref|XP_796203.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 494 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 99/265 (37%), Gaps = 30/265 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIV-------VVHGAGRTD 52 + +++ Y G+ Y G QR +I+ + A+ E RTD Sbjct: 71 RKVAILLSYAGANYVGMQRNPGVQTIEEDLVNALVKSGAIPEDCGRNMNKMSFQRCARTD 130 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + + L + +N +L I ++ ++ F+ + + R+Y Sbjct: 131 KGVSAAGQVVSL---KVLMLDNLMERINEHL--PPVIRVMGVTRTTGGFNCKNNCEFRTY 185 Query: 113 LYRIITRQA----PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 +Y I T LEK R E + + +G H+F F S S Sbjct: 186 MYLIPTFAFTPLEDFTLEKYRV----SDEKIEEVGEQLKKYIGTHNFHNFTSGKAFTDPS 241 Query: 168 PIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 R I F I+V +SF+ QIR +G + V G + +E+A Sbjct: 242 ANRYIKEFTCEKGFVDDGMEFAVIKVKGQSFMLHQIRKMLGLVLAVVRGLTPPSTVERAF 301 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 Q K P AP GL ++V Y Sbjct: 302 QEP--KLDIPRAPGLGLVLEAVHYD 324 >gi|254583638|ref|XP_002497387.1| ZYRO0F04334p [Zygosaccharomyces rouxii] gi|238940280|emb|CAR28454.1| ZYRO0F04334p [Zygosaccharomyces rouxii] Length = 431 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 94/270 (34%), Gaps = 43/270 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 + Y G Y G QK+ +++G I A+ + GRTD G Sbjct: 82 IALKFSYLGWNYNGLAVQKDVTPLPTVEGVIIDALMKCRLVASSNVQDFRFSRCGRTDKG 141 Query: 55 VHALRQVAHFDL------VREWVPVILCKALNA----YLKISDTISILNLSIVDKQ-FHA 103 V A+ QV ++ + P + L + + I I + + + F A Sbjct: 142 VSAMNQVISLEVRSNLSDEEQKDPSNDTRELQYAQILNHLLPEDIKISAMCLRPPEGFDA 201 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 R+S R Y Y K L + M+ AA G HDF F + Sbjct: 202 RYSCEYRHYKYLFS----------------GKGLMLDRMQKAAALYHGEHDFRNFCKLDG 245 Query: 163 -CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ R I ++ N+ +V +FL Q+R + L LVG G + + Sbjct: 246 SKQITNYTRNILGSEIQHISDNMYCFDLVGSAFLWHQVRCMMAILFLVGQGLEEPSVITN 305 Query: 221 ALQAQDRKECGP---LAPPEGLYFDSVEYS 247 L D+ P +A L ++ Sbjct: 306 LLDV-DKTPQKPIYEMASDLPLILYDCKFP 334 >gi|195449703|ref|XP_002072187.1| GK22713 [Drosophila willistoni] gi|194168272|gb|EDW83173.1| GK22713 [Drosophila willistoni] Length = 412 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 37/270 (13%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL------VTGEIVVVHG---AGRTDSGV 55 +++ Y G+ YFG QR +I+ + K + + E V + A RTD GV Sbjct: 67 AILLSYCGANYFGMQRNPGMQTIEEELFKVMLKHKWITEDSFEQVQIACFQRAARTDKGV 126 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L + + L + I + + V K F+A+ R+Y Y Sbjct: 127 SAARQVCSVKLPDDLDLKAFNEDL------PEQIRLFGVERVTKGFNAKDQCNARTYTYT 180 Query: 116 IIT-----------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + T ++A E+ + P+ L + +R Q G +F F S Sbjct: 181 LPTVAFAPCQSESDKEAQPPEEQSTYCISPEHL--QKVRETLQLYEGTKNFHNFTSKKNF 238 Query: 165 -ASSPIRTIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 S R I F + + ++V +SF+ QIR VG + G T++ Sbjct: 239 LDPSAKRFIMLFSCSDPFKSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTST 298 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 LE+AL + + P+AP GL D+V Y Sbjct: 299 LERALTEE--RLDLPMAPGLGLVLDTVHYE 326 >gi|281200681|gb|EFA74899.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500] Length = 1052 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 100/299 (33%), Gaps = 76/299 (25%) Query: 3 RY-CMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT----GEIVVVHG---AGRTDS 53 RY + + Y G Y G+ Q+ +I+G + +A+ + +GRTD Sbjct: 767 RYIALKVAYLGWDYHGFAAQQITEETIEGHLIRALQKTCLINDIKNCNYSKYALSGRTDK 826 Query: 54 GVHALRQVAHFDLVREW-------------------------------VPVILCKALNAY 82 GV A QV + K LN Sbjct: 827 GVSAFGQVISLYVRSNLTEGNDLIPPTVIDDEAIAKKKANLLKNKKTHEEFQFVKMLNGV 886 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 L I +L S + F+ARFS + R+Y Y + P +LD M Sbjct: 887 L--PPYIRVLGWSPIPFHFNARFSTLYRTYKY----------------FFDPSNLDLNLM 928 Query: 143 RIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFDVNSFG-------NLIEIRVVARSFL 194 + A + +G HDF+ F I + S R I FD+ + + +FL Sbjct: 929 KEAGKSYIGEHDFSNFCKIDLESVKSFTRVILSFDIQPVESGDFSTSGMYVATICGYAFL 988 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE------GLYFDSVEYS 247 QIR + L L+G K+ +T + L G + PP L Y Sbjct: 989 WHQIRCMMAMLFLIGQKKFPTTIIADLLDL----SKGIVKPPYEMASEVPLVLFDCGYE 1043 >gi|125773069|ref|XP_001357793.1| GA17995 [Drosophila pseudoobscura pseudoobscura] gi|54637526|gb|EAL26928.1| GA17995 [Drosophila pseudoobscura pseudoobscura] Length = 409 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQ+ L E +A NA L + I + + V K F+A+ R+Y Y Sbjct: 133 SAARQICSVKLPEELD----LEAFNADL--PEQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTI 172 + T A + + I L + ++ + G +F F S S R I Sbjct: 187 LPTVAFASCEAESEQDTFRITPEL-LDRVKETLKLYEGTKNFHNFTSKKNFLDPSAKRFI 245 Query: 173 DHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 F + + ++V +SF+ QIR VG + G T+ L++AL + Sbjct: 246 MAFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLDRALTEE- 304 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 + P+AP GL D+V Y Sbjct: 305 -RLDLPMAPGLGLVLDTVHYE 324 >gi|330804770|ref|XP_003290364.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum] gi|325079531|gb|EGC33127.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum] Length = 449 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 97/303 (32%), Gaps = 79/303 (26%) Query: 2 IRY-CMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGV 55 RY + Y G Y G+ Q +I+G + KA+ + + +GRTD GV Sbjct: 67 RRYVAFKVSYVGWPYHGFAAQDCTDETIEGHLIKALKRTSLISDIKTSNYAKSGRTDKGV 126 Query: 56 HALRQVAHFDLVREWVP-----------------------------------------VI 74 A QV + Sbjct: 127 SAFGQVISLYVRSNLTEGEGIIAPLDQSGGPISNRPSKNNNNNSNSNNQKQQNKAKEEFP 186 Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 K LN L I +L + + F++RFS + R+Y Y Sbjct: 187 YVKMLNGVL--PPEIRVLGWAPIPFHFNSRFSTLFRTYKYFFTLN--------------- 229 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFDVNS---FGNLIEIRVVA 190 ++D M+ A H +G HDF+ F + + S R I F + +L + Sbjct: 230 -NMDLNLMKEAGNHYLGEHDFSNFCKMDIENVKSFKRVILEFSIEPVNNHNDLYVATIKG 288 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE------GLYFDSV 244 +FL QIR + L L+G K+ + + + L + G PP L Sbjct: 289 YAFLWHQIRCMMAMLFLIGQKKFPVSIIPELLDTSN----GITKPPYEMASEIPLVLFDC 344 Query: 245 EYS 247 Y Sbjct: 345 GYE 347 >gi|170072176|ref|XP_001870114.1| tRNA pseudouridine synthase A [Culex quinquefasciatus] gi|167868280|gb|EDS31663.1| tRNA pseudouridine synthase A [Culex quinquefasciatus] Length = 431 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 95/260 (36%), Gaps = 26/260 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTDSGVH 56 +++ Y+G YFG QR +I+ + A+ + + A RTD GV Sbjct: 98 ILMGYSGVNYFGMQRNPGTKTIEEELLVAMLKNEWISDEAFKQPQQIQFQRAARTDKGVS 157 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV L L K L + I + + V K F+++ + R+Y Y + Sbjct: 158 AATQVVSIKLPENLDIAGLNKDL------PEQIRVFAVKRVTKGFNSKSNCDARTYTYTL 211 Query: 117 ITRQAPLALEKGRAWLIPKSLD-CENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTIDH 174 T E+ D + ++ + G +F F S + R I Sbjct: 212 PTVAFAAHDEEVSVETYRAPEDRIQKVQETLKLFEGTKNFHNFTSRKEFIDPSVKRFIMS 271 Query: 175 FDVN----SFGNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F+ G +E ++ +SF+ QIR VG V G + KA + + Sbjct: 272 FECEAPFVPEGTTVEFATIKIKGQSFMLHQIRKMVGLTLAVVRGLTPPETIMKAFE--ET 329 Query: 228 KECGPLAPPEGLYFDSVEYS 247 + P AP GL + Y Sbjct: 330 RYGVPTAPGLGLVLSRIHYE 349 >gi|76803149|ref|YP_331244.1| tRNA pseudouridine synthase A [Natronomonas pharaonis DSM 2160] gi|121697999|sp|Q3IMP6|TRUA_NATPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76559014|emb|CAI50612.1| tRNA-pseudouridine synthase [Natronomonas pharaonis DSM 2160] Length = 267 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 98/253 (38%), Gaps = 32/253 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVH 56 +R I Y+G+G+ G+QRQ +G +++ ++ +A+ + G AGRTD+GV Sbjct: 1 MR-AFRIAYDGTGFRGFQRQPHGETVENALFEALSSLGVAFEDGRPPGYAAAGRTDAGVS 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q F+ +P +ALN L ++ + V FHA A R+Y Y + Sbjct: 60 ARAQTVAFEAPAWLLP----RALNGEL--PASVRAWAAADVGDAFHATHDATARAYRYFL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P A D R A L G HDF F RT+ Sbjct: 114 Y-APEPSA-------------DTTRARAACARLSGSHDFHNFT---PDDRGTERTL-SMR 155 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC--GPLA 234 + G + + A F +R V ++ V G+ + L +AL A Sbjct: 156 LRRQGPFLVVDCRAGGFARQLVRRLVAAVAAVARGERPLSFLGRALDDDPLSGADGIAAA 215 Query: 235 PPEGLYFDSVEYS 247 PPE L V Y Sbjct: 216 PPEPLLLADVVYP 228 >gi|313231689|emb|CBY08802.1| unnamed protein product [Oikopleura dioica] Length = 443 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 100/267 (37%), Gaps = 31/267 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------------GEIVVVHGAG 49 + ++I Y G Y G Q + +IEK +F + Sbjct: 82 KVAILISYCGKNYHGLQHNPGDDKV-DTIEKRVFQALVAAKVVYSNVINDRKKCAYQSCS 140 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A+ VA + +P LC+ +NA+L D I + + V K F A+ Sbjct: 141 RTDKGVSAIGNVASL---KCKIPKNLCELVNAHL--PDDIRLTSFEQVTKGFCAKKRCTH 195 Query: 110 RSYLYRIITRQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-S 166 R+Y Y T ++ ++ I E +R + +G + F S Q Sbjct: 196 RTYSYYCPTICFGSKEDWDRPSSFRISTE-KLEGVRELLKKYIGTRSYHNFTSGKRQGDE 254 Query: 167 SPIRTIDHFDVN------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I F + + +E+RVV +SF+ QIR VG + E+ Sbjct: 255 SAKRHILDFRIQGDPFICNEWEYVELRVVGQSFMIHQIRKMVGLIIARAGNHCQDDHWER 314 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 A Q E P AP GL V Y Sbjct: 315 AFQRP--FEDVPKAPGNGLVLRQVHYD 339 >gi|18376136|emb|CAD21201.1| related to pseudouridine synthase 3 [Neurospora crassa] Length = 669 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 74/344 (21%), Positives = 101/344 (29%), Gaps = 102/344 (29%) Query: 4 YCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL-----------VTGEIVVVHGAGR 50 + Y G Y G++ Q SI+ + KA+ V GR Sbjct: 142 IALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKCGR 201 Query: 51 TDSGVHALRQVAHFDLVRE----------------------------------------- 69 TD GV A QV + Sbjct: 202 TDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAAAEVDHQ 261 Query: 70 ---WVPVI----LCKALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT--- 118 W P+ C+ LN L I I+ + + F ARFS R Y Y Sbjct: 262 KPEWDPIADEIPYCRVLNRLL--PPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAF 319 Query: 119 RQAPLALEKGRAWLIPKS------LDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIR 170 P LE A KS LD + MR AA+ G HDF F I Q ++ R Sbjct: 320 APMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSR 379 Query: 171 TIDHFDVNSFGNL-------------------------IEIRVVARSFLHTQIRSFVGSL 205 + D+ +L V +FL QIR V L Sbjct: 380 RVFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVAVL 439 Query: 206 KLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 LVG G + +++ L + RK +A L + Sbjct: 440 FLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFP 483 >gi|85083865|ref|XP_957207.1| hypothetical protein NCU01784 [Neurospora crassa OR74A] gi|28918294|gb|EAA27971.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 608 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 74/344 (21%), Positives = 101/344 (29%), Gaps = 102/344 (29%) Query: 4 YCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL-----------VTGEIVVVHGAGR 50 + Y G Y G++ Q SI+ + KA+ V GR Sbjct: 81 IALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKCGR 140 Query: 51 TDSGVHALRQVAHFDLVRE----------------------------------------- 69 TD GV A QV + Sbjct: 141 TDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAAAEVDHQ 200 Query: 70 ---WVPVI----LCKALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT--- 118 W P+ C+ LN L I I+ + + F ARFS R Y Y Sbjct: 201 KPEWDPIADEIPYCRVLNRLL--PPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAF 258 Query: 119 RQAPLALEKGRAWLIPKS------LDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIR 170 P LE A KS LD + MR AA+ G HDF F I Q ++ R Sbjct: 259 APMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSR 318 Query: 171 TIDHFDVNSFGNL-------------------------IEIRVVARSFLHTQIRSFVGSL 205 + D+ +L V +FL QIR V L Sbjct: 319 RVFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVAVL 378 Query: 206 KLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 LVG G + +++ L + RK +A L + Sbjct: 379 FLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFP 422 >gi|76156463|gb|ABA40375.1| SJCHGC06804 protein [Schistosoma japonicum] Length = 334 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 104/262 (39%), Gaps = 26/262 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y+G GY+G QR +I+G + KA+F + V A +TD V Sbjct: 50 AILMMYSGWGYYGMQRGPIYPTIEGELSKALFTCGQLVNVTSEEHKKVNFQRASKTDKYV 109 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL QV L + L LN L I IL++ V + F + S R Y Y Sbjct: 110 SALGQVCSLKL---YDDADLLNKLNTAL--PQDIRILDIIRVTRSFSSYNSCTHRVYDYL 164 Query: 116 IIT---RQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIR 170 + T L+L W + + + G H+F F S S R Sbjct: 165 LPTFALSSGNLSLSDSTCWTYRVTAEKITKLNNLLERYKGTHNFYNFTSGRLPTDKSCYR 224 Query: 171 TIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 I + IR++ +SF+ Q+R +G + + G T D+ + + Sbjct: 225 HIKSVECIPTFLLGEHEYTVIRIIGQSFMLHQVRKMIGLVLGILRGYAT-EDVFDIVFCK 283 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 +R + P AP GL + V++S Sbjct: 284 ERVDI-PKAPGLGLMLNQVDFS 304 >gi|301618506|ref|XP_002938660.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Xenopus (Silurana) tropicalis] Length = 331 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 27/222 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSI---QGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y G+ Y G S+ Q +E A + V + RTDSGVHA+ Sbjct: 7 RYLVFFQYYGTKYSGVMETPVTQSVLGVQNYLEMAAQKLRPVGTVKFFISSRTDSGVHAI 66 Query: 59 RQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + IL +ALN +L+ + I +L V FHAR A+ R+Y+ Sbjct: 67 CNSAHVDIQRANGKPPFTEDILVQALNHHLQ-PEPIRLLKAVRVCDNFHARHKALSRTYV 125 Query: 114 YRIITRQAP---LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSP 168 YR+ + E+ W +P SL+ + A++ L+G H+F+ FRS + + SP Sbjct: 126 YRVAAGCSHSELPVFEENLCWAVPGSLNVAAIHEASEMLLGTHNFSAFRSANSENVFKSP 185 Query: 169 IRTIDHFDVN------------SFGNLIEIRVVARSFLHTQI 198 I+T+ D+ + ARSFL+ Q+ Sbjct: 186 IKTLQQADITPSSGILTHHWQYRNLQFWDFTFRARSFLYKQV 227 >gi|68072249|ref|XP_678038.1| tRNA pseudouridine synthase [Plasmodium berghei strain ANKA] gi|56498378|emb|CAH98757.1| tRNA pseudouridine synthase, putative [Plasmodium berghei] Length = 281 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 32/239 (13%) Query: 17 GWQRQK-NGSSIQGSIEKAIF---LVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP 72 G QK N ++++ + + + L++ RTD GV A L ++ Sbjct: 1 GSAYQKDNNNTVENKLIEKLQQLDLISDSNCSFSRVSRTDKGVSARMNALTIRLKNKYPH 60 Query: 73 VIL-------CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + K LN L I I+++ V F AR + I+R+Y+Y I Sbjct: 61 LSISIIEKIYLKELNKKL---KNIQIIHIQCVPNNFDARLNCIQRTYVYFFIN------- 110 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLI 184 K+ + M A + +G H+F+ F +S IRTI F++ + N Sbjct: 111 ---------KNYNITKMNEATKIFLGEHNFSNFCKKRKNNTSFIRTIHKFEIKNIDQNFY 161 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFD 242 ++ SFL+ QIR V +L LVG + D++ L+ + + +A GL Sbjct: 162 YFKIKGTSFLYNQIRHMVAALFLVGKNQLDGQDIKSMLENNSIKNKNYKIADECGLLLY 220 >gi|116199417|ref|XP_001225520.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51] gi|88179143|gb|EAQ86611.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51] Length = 553 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 97/299 (32%), Gaps = 57/299 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAI-----------FLVTGEIVVVHGAGR 50 + + Y G Y G++ Q S +++ + +A+ V GR Sbjct: 110 IALKLAYLGKRYGGFEYQAGVSVSTVEEELWRALAKSCLIWPDDPSRVDFAPWEYSKCGR 169 Query: 51 TDSG----VHALRQVAHFDLVREWVPVI----LCKALNAYLKISDTISILNLSIV-DKQF 101 TD G V R D R W PV + LN L I +L + + F Sbjct: 170 TDKGAGVEVERGRGRGEEDGKRAWDPVADEINYPRILNRLL--PPDIRVLAWAPTLPEDF 227 Query: 102 HARFSAIRRSYLYRIIT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 ARFS R Y Y P++++ R LD + MR AA+ G HDF F Sbjct: 228 SARFSCRERQYRYFFTQPAFAPLPISVDPERKKGSEGWLDIDAMRKAAKLFEGVHDFRNF 287 Query: 159 RSIH--CQASSPIRTIDHFDVNSFGN--------------------------LIEIRVVA 190 + Q S+ R + DV + + V Sbjct: 288 CKVDGVKQISNFKRRMFEADVVEVEDAGSALPYLAQQGFKPESLVGGTTYPKVYYFHVRG 347 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE--GLYFDSVEYS 247 +FL QIR V L LVG G + + L + A E L + Sbjct: 348 SAFLWHQIRHMVAILFLVGQGLEKPSIVTDLLDVEKNPRKPNYAMAEEVPLVLWDCIFP 406 >gi|118782859|ref|XP_312543.3| AGAP002409-PA [Anopheles gambiae str. PEST] gi|116129767|gb|EAA08062.3| AGAP002409-PA [Anopheles gambiae str. PEST] Length = 451 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 101/261 (38%), Gaps = 28/261 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTDSGVH 56 +++ Y+G YFG QR +I+ + +A+ + + A RTD GV Sbjct: 115 ILLGYSGVNYFGMQRNPGTKTIEEDLLRAMQKREWINDEGFRQPQQIQFQRAARTDKGVS 174 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV L +ALN+ L + I + + V K F+++ + R+Y Y + Sbjct: 175 AAMQVVSIKLPDNLD----IEALNSEL--PEDIRVYAVKRVTKGFNSKTNCDARTYTYTL 228 Query: 117 ITRQAPLALEK--GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTID 173 T EK + + +P + VG +F F S + R I Sbjct: 229 PTIAFAPNEEKVDIQTYRLPAER-LARVNEVLALYVGTKNFHNFTSRKEFLDPSVKRFIM 287 Query: 174 HFDVNS-------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 F+ + I++ +SF+ QIR VG V G S +EKA QD Sbjct: 288 SFECDPPFLPEGSTAEFATIKIKGQSFMLHQIRKMVGLTIAVVRGLAESDIIEKAF-GQD 346 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R P AP GL + Y Sbjct: 347 R-YGIPTAPGLGLVLSRIHYD 366 >gi|170068141|ref|XP_001868750.1| pseudouridylate synthase [Culex quinquefasciatus] gi|167864259|gb|EDS27642.1| pseudouridylate synthase [Culex quinquefasciatus] Length = 470 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 95/259 (36%), Gaps = 44/259 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G + G+ Q++ ++I+ + A+ V E H GRTD GV A Sbjct: 76 ILLRFFYLGWDFQGYATQEDSANTIEHHLFNALTRVCLIESRESSNYHRCGRTDKGVSAF 135 Query: 59 RQVA------HFDLVREWVPVILCKALNA----YLKISDTIS-ILNLSIVDKQFHARFSA 107 QV F + P L LN + I + + + + ARF Sbjct: 136 HQVVSLDVRSKFPPESQLAPESLQNELNYCQLLNRVLPAEIRCVAWMPTANPNYSARFDC 195 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQA 165 R+Y Y + SLD + MR + LVG HDF + Sbjct: 196 RSRTYRY----------------FFPRGSLDVDAMRKGCEFLVGSHDFRNLCKMDVGNGV 239 Query: 166 SSPIRTIDHFDVN--------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + R + + + S +++ + ++FL Q+R + L LVG G+ T Sbjct: 240 VTFQRNVHYAVIRDSLKDGGDSSYDMLYFELRGKAFLWHQVRCIMAILILVGQGREDPTV 299 Query: 218 LEKALQAQD--RKECGPLA 234 + + L + RK LA Sbjct: 300 IRELLDVEKNPRKPQYSLA 318 >gi|307214388|gb|EFN89459.1| tRNA pseudouridine synthase A [Harpegnathos saltator] Length = 364 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 95/278 (34%), Gaps = 46/278 (16%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVHAL 58 + Y G Y+G QR +I+ + A+ + A RTD GV A+ Sbjct: 2 LGYLGKNYYGMQRNPGMKTIEEDLVNALLKANLITTEQFENLRTINFQRAARTDKGVSAV 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 RQ+ L I+ + + D I + + V K F+++ R+Y Y I + Sbjct: 62 RQIVSLKLPENPDKTIINQ------FLPDVIRVFGIKRVTKGFNSKNQCDARTYRYIIPS 115 Query: 119 -------------RQAPLALEK-------GRAWLIPKSLDCENMRI---AAQHLVGRHDF 155 + E+ I L E++ + G H+F Sbjct: 116 FTFAMEDQSLLKMGEEVDINERIKQISTIDGEPYIDYRLSIESLNRLNSILKLFEGTHNF 175 Query: 156 TTFRSI----HCQASSPIRTIDHFD--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 F S +A I D V+ + + V +SF+ QIR V ++ V Sbjct: 176 HNFTSKTKPLDPRARRYIINFHCVDTFVSKGIEFVVLEVKGQSFMLHQIRKMVATVIAVA 235 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +A + K P+AP GL V Y Sbjct: 236 RNIIPEETINEAF--KTVKMEIPIAPSLGLCLCHVHYD 271 >gi|270605639|ref|ZP_06221621.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270318160|gb|EFA29385.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 131 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 61/106 (57%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M+ A Q L+G HDF++FR+ CQ+ +P R + H +V+ G I + + A +F+H +R+ Sbjct: 1 MQQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIGQYIIVDIQANAFVHHMVRNI 60 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VGSL VG G ++ L ++R+ P A P+GLY V Y Sbjct: 61 VGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYLVDVIYP 106 >gi|150400596|ref|YP_001324362.1| tRNA pseudouridine synthase A [Methanococcus aeolicus Nankai-3] gi|150013299|gb|ABR55750.1| tRNA pseudouridine synthase A [Methanococcus aeolicus Nankai-3] Length = 310 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 33/248 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 Y + I Y+G+ G+Q + +++ I A+ E + GRTD+GV AL Sbjct: 39 YILKIAYDGNN-DGFQSHPHKKNNVCDIIINALLKCGYMDKEETKPLLRGGRTDNGVLAL 97 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 +L +E + + L + +L S + + ++ R Y Y + Sbjct: 98 GNFIIVNLNQEPILSHVYAKLKYT-----GVWVLGYSKISELPEIKY----RHYKYILPN 148 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDV 177 + M A L+G H F + +P+RTI + Sbjct: 149 EGQ----------------NINLMIEGANKLIGTHSFHNLSKRDNTKNKNPLRTIYDIKI 192 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I I + ++FL +R V +L VG ++K L + E AP Sbjct: 193 KENDFFITIDIFGKNFLWNMVRRIVTALSEVGKENKPLNWIDKLLDI-NHTEGVAPAPAN 251 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 252 GLILVDVK 259 >gi|302899152|ref|XP_003047991.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256728923|gb|EEU42278.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 530 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 93/333 (27%), Gaps = 95/333 (28%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFL-----------VTGEIVVVHGAGR 50 + + Y G Y G++ Q N SI+ + A+ V E GR Sbjct: 57 IALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPKDERVVDFECCEYSKCGR 116 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALN------------------------------ 80 TD GV A QV + + L+ Sbjct: 117 TDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGDAMVVDEPTGENGEEEDYIETSSFDPI 176 Query: 81 ---------AYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRIIT---RQAPLALEK 127 + I IL F ARFS R Y Y P A Sbjct: 177 KDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPTAGGA 236 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNSFGN--- 182 W LD E MR AA+ G HDF F I Q ++ +R I D+ + Sbjct: 237 KNGW-----LDIEAMRDAAKRYEGEHDFRNFCKIDPGKQITNFVRNIFEADIKEVRDVSS 291 Query: 183 -------------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + +V +FL QIR VG L LVG Sbjct: 292 ALPYLSGSQYAPAGGVVDKDAVHPKVYMFQVRGSAFLWHQIRHMVGVLFLVGQRLEKPEV 351 Query: 218 LEKALQAQDRKECGP---LAPPEGLYFDSVEYS 247 + L + C P +A L + Sbjct: 352 ISTLLDVA-KSPCKPNYVMADEVPLVLWDCIFP 383 >gi|84996449|ref|XP_952946.1| tRNA-pseudouridine synthase I [Theileria annulata strain Ankara] gi|65303943|emb|CAI76322.1| tRNA-pseudouridine synthase I, putative [Theileria annulata] Length = 480 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 65/351 (18%), Positives = 108/351 (30%), Gaps = 105/351 (29%) Query: 2 IRYCMIIEYNGSGYFGWQ----------RQKN-----GSSIQGSIEKAIFLVTG------ 40 +I+ Y+G+ Y G Q N +SI + K I ++ G Sbjct: 107 TNLILIVSYDGTFYHGMAGPMIFLKDYGIQVNFDNDKVNSINNELLKTITMLHGYFGNKR 166 Query: 41 -------------------------------------------EIVVVHGAGRTDSGVHA 57 + + RTD GVH+ Sbjct: 167 KLKKKNLRELSKKIKSKDEDSTYINGYNDEENTSSPDLLEEYARRFTLITSSRTDRGVHS 226 Query: 58 LRQVAHFDLVREWVPVILCKALNA----------------YLKISDTISILNL-SIVDKQ 100 + V+ +LV E C+ L+ ++ I + ++ + + Sbjct: 227 MGTVSLINLVSEIYLFQACQYLSFDKKFNFDSLEEFQDSLNKRLPSDIRVTSVITPPHDE 286 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWL-----------------IPKSLDCENMR 143 F+ R I +SY Y++ P E+ W + E ++ Sbjct: 287 FNVRHHNIGKSYSYKVDLSPNPSLFERNHYWQIMSDTHFVNTLLRKYRDVKAPFSFEKLK 346 Query: 144 IAAQHLVGRHDFTTFRS-----IHCQASSPIRTIDHFDV--NSFGNLIEIRVVARSFLHT 196 AA+ G+H+F FR + PI TI + +EI V FL+ Sbjct: 347 EAARVFHGKHNFEAFRKNCRGNERDKIIDPICTIHSIEFVNIPQDKKVEIIVNGDRFLYK 406 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +R V L L G +++AL P AP GLY V + Sbjct: 407 MVRCIVSHLILAGFNVIKPDQIKRALDNATEIPNIPYAPAHGLYLKKVFFE 457 >gi|159487841|ref|XP_001701931.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158281150|gb|EDP06906.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 287 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 99/297 (33%), Gaps = 71/297 (23%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV---------TGEIVVVHGAGR 50 RY + + Y G + G+ RQ N ++I+G + A+ + GR Sbjct: 10 TRYVALELMYVGWAFQGFARQDNTENTIEGVLFSALRKTKLIPEAAAKPISELAYSRCGR 69 Query: 51 TDSGVHALRQVAHFDLVREWVP-----------------------------VILCKALNA 81 TD GV AL QV L P + +N Sbjct: 70 TDRGVSALGQVVALQLRSCARPGGGGLGYHDPSMCGPARESLQCPSWCVQEFDYPRLINK 129 Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 L + IL + V F+AR ++Y+ SLD + Sbjct: 130 AL--PPEVRILGWTPVPADFNARCGGRAGEWVYQ------------------QHSLDIQA 169 Query: 142 MRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNSF--------GNLIEIRVVARS 192 MR AA H +G HDF F S R I F V + + V + Sbjct: 170 MRTAAAHFIGEHDFRNFCKPDVATVRSFRRRILSFTVEPVTTSAADAAHQVYALTVRGTA 229 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 FL Q+R L +VG G+ + + L +A RK +AP E L + + Sbjct: 230 FLWHQVRCMAAILLMVGRGQEAPDVVARLLDVEACPRKPQYSMAPEEPLLLYACGFP 286 >gi|289620363|emb|CBI53221.1| unnamed protein product [Sordaria macrospora] Length = 603 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 98/337 (29%), Gaps = 95/337 (28%) Query: 4 YCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL-----------VTGEIVVVHGAGR 50 + Y G Y G++ Q SI+ + KA+ V GR Sbjct: 81 IALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLVFPERPDEVDFGPWEYSKCGR 140 Query: 51 TDSGVHALRQVAHFDLVRE----------------------------------------- 69 TD GV A QV + Sbjct: 141 TDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGGNGGDDVVMTEPQQQEAEKATDVEHQKPE 200 Query: 70 WVPVI----LCKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIIT---RQA 121 W P+ C+ LN L I I+ + F ARFS R Y Y Sbjct: 201 WDPIADEVPYCRVLNRLL--PPDIRIMAWAPALPPNFSARFSCRERQYRYFFTQPAFAPM 258 Query: 122 PLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVN 178 P +LE + LD MR AA+ G HDF F I Q ++ R I D+ Sbjct: 259 PSSLEPLAKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDIV 318 Query: 179 SFGNL--------------------------IEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 ++ V +FL QIR V L LVG G Sbjct: 319 EVKDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGL 378 Query: 213 WTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 + +++ L + RK +A L + Sbjct: 379 EPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFP 415 >gi|224118612|ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|222873619|gb|EEF10750.1| predicted protein [Populus trichocarpa] Length = 428 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 107/315 (33%), Gaps = 72/315 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-------------VHGA 48 + + +++ Y+G + GWQ+Q +++QG +EK++ E A Sbjct: 105 VTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVA 164 Query: 49 GRTDSGVHALRQVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL+QV F R+ P + A+N + + ++S V + FH FSA Sbjct: 165 GRTDKGVSALQQVCSFYTWRKDVKPHEIEDAIND--VAPGKVRVESISEVSRAFHPNFSA 222 Query: 108 IRRSYLYRIITRQAPLAL-------------------EKGRAWLI--------------- 133 R YLY ++ + Sbjct: 223 KWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSIISDED 282 Query: 134 -------PKSLDCENMRIAAQHLVGR--------HDFTTFRSIHC-------QASSPIRT 171 P+S + Q L G+ D R++ A + Sbjct: 283 ELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETR 342 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + D ++ + ++A FL +R V + L K + A R+ Sbjct: 343 LPSPDHEKGIRVMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATA 402 Query: 232 PLAPPEGLYFDSVEY 246 P APP+GL V Y Sbjct: 403 PPAPPDGLCLVDVGY 417 >gi|270006513|gb|EFA02961.1| hypothetical protein TcasGA2_TC030541 [Tribolium castaneum] Length = 365 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 95/261 (36%), Gaps = 45/261 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGV 55 + Y G Y G+ Q++ ++ +IE +F + ++ H GRTD + Sbjct: 40 VLLKFLYLGWDYQGYVTQED--TV-NTIEHHVFNALIKTCLIENRSSANYHRCGRTDKDL 96 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 + + CK LN L + I + V+ F ARF R+Y Y Sbjct: 97 RSNG-------DDFESEINYCKILNRVL--PENIQFVAWCPVESAFSARFDCKNRTYKY- 146 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTID 173 + +LD + M+IAA +LVG HDF F + R I Sbjct: 147 ---------------FFPKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNIL 191 Query: 174 HFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQD 226 D++ ++ + + +FL QIR VG L LVG GK + L Sbjct: 192 SVDISLFQEDERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLDITRNP 251 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 RK +A L Y Sbjct: 252 RKPDYHMASEIPLNLYDCHYD 272 >gi|332029057|gb|EGI69071.1| tRNA pseudouridine synthase A [Acromyrmex echinatior] Length = 398 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 98/283 (34%), Gaps = 49/283 (17%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEI------VVVHGAGRTDSGV 55 M++ Y G Y+G QR +I+ + A+ +T E + A RTD GV Sbjct: 46 AMLLGYVGKDYYGMQRNPGMKTIEEDLIIALLKADLITKEQFENTRAINFQRAARTDKGV 105 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+RQ+ L ++ + + D I + + V K F+++ R+Y Y Sbjct: 106 SAIRQIVSLKLPENSNKTVINQ------FLPDAIRVFGIKRVTKGFNSKNQCDARTYRYV 159 Query: 116 IITRQAPLALE-------------------------KGRAWLIPKSLDCENMRIAAQHLV 150 I + ALE K + + + Sbjct: 160 IPS--YAFALEDQSLLKLGEEVDEDERIKQLSIIDGKPYTDYRLSPESLDRLNSILKLFE 217 Query: 151 GRHDFTTF-RSIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGS 204 G H+F F + R I F L + + +SF+ QIR V Sbjct: 218 GSHNFHNFTSKVKPLDPRARRYIISFCCTETFVLNDIELAVLEIKGQSFMLHQIRKMVAI 277 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + + +++A + D+ + PLAP GL V Y Sbjct: 278 VIAIARNMISKETIDEAFKTMDKMDL-PLAPSLGLCLCHVHYD 319 >gi|157115880|ref|XP_001658327.1| pseudouridylate synthase [Aedes aegypti] gi|108876737|gb|EAT40962.1| pseudouridylate synthase [Aedes aegypti] Length = 455 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 101/263 (38%), Gaps = 32/263 (12%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSI-----------EKAIFLVTGEIVVVHGAGRTDSG 54 +++ Y+G Y G QR +I+ + E+A + + A RTD G Sbjct: 120 IVMGYSGVNYLGMQRNPGTKTIEEELLVAMLKHNWISEEAFNQ--PQQIQFQRAARTDKG 177 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A QV L L K L + I + + V K F+++ + R+Y Y Sbjct: 178 VSAATQVVSIKLPDNVDIDALNKDL------PEQIRVFAVKRVTKGFNSKSNCDARTYTY 231 Query: 115 RIITRQAPLALEK--GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRT 171 + T L +K ++ +P+ + + + G +F F S S R Sbjct: 232 TLPTMAFALHEDKVDMESYRVPEER-LKVVEETLKLFEGTKNFHNFTSRKEFIDPSSKRF 290 Query: 172 IDHFDVN----SFGNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F+ G+ +E ++ +SF+ QIR VG V G + KA + Sbjct: 291 IMSFECEAPFVPEGSTVEFATLKIKGQSFMLHQIRKMVGLTLAVVRGLTPQETIVKAFEE 350 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 Q + P AP GL + + Y Sbjct: 351 Q--RYGVPTAPGLGLVLNRIHYE 371 >gi|257461391|ref|ZP_05626487.1| tRNA pseudouridine synthase A [Campylobacter gracilis RM3268] gi|257441114|gb|EEV16261.1| tRNA pseudouridine synthase A [Campylobacter gracilis RM3268] Length = 203 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 91/214 (42%), Gaps = 15/214 (7%) Query: 34 AIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN 93 A+ V G + + RTD GVHALRQV+ + W L + +N + I + + Sbjct: 4 ALGRV-GIFAPLISSSRTDKGVHALRQVSCVECTVHWELPRLKELINRHCA--PYIFVQH 60 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 +S V + FH R+ A+ RSY Y + + P P+ +D + A + +G H Sbjct: 61 ISPVPRDFHPRYDAVARSYRYVL-NHERPSPFLSDFCVFYPR-VDLAALNAALANFIGEH 118 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGK 212 DF F SP+R + SF NL I A FL Q+R V +LK V G+ Sbjct: 119 DFREFMKSGSDIKSPVRKLYVARAYSFRNLTLINFKANGFLRAQVRLMVANALKSVQSGR 178 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + R PP GLY SV Y Sbjct: 179 KI---------SFSRALSRIPFPPNGLYLSSVSY 203 >gi|46205610|ref|ZP_00209946.1| COG0101: Pseudouridylate synthase [Magnetospirillum magnetotacticum MS-1] Length = 193 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 7/162 (4%) Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLV 150 + F ARFSA+ R+Y YR+ A L + + LD M A + L+ Sbjct: 2 HRAAPAPTGFDARFSALHRAYTYRVADDPAQRDPLRREWVLWNRRPLDVAAMDAAVRPLL 61 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-----LIEIRVVARSFLHTQIRSFVGSL 205 G DF +F ++ IR + H + + L+ V A +F H +R+ VG+ Sbjct: 62 GVRDFASFCKPRP-GATTIRELQHLSWSRPADGPDAGLVVAHVRADAFCHNMVRALVGAS 120 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VG+G+ + L ++ R + P GL + V Y Sbjct: 121 LAVGEGRRDVGWPAELLASRRRDAGAGVVPAHGLVLEEVTYP 162 >gi|196008069|ref|XP_002113900.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens] gi|190582919|gb|EDV22990.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens] Length = 385 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 23/260 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ + G+GYFG QR + +I+ + A+F + + A RTD Sbjct: 46 RKVALLLGFCGAGYFGMQRNRGTKTIEEDLINALFKAGAIPEAAKEHEQKMAFQRASRTD 105 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA QV F + +V + +N++L I + V K F+++ + R+Y Sbjct: 106 KGVHAAAQVVSF---KMFVVDDVIAKINSHL--PREIRVFGHFRVTKGFNSKTACDARTY 160 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRT 171 Y + T EK +++ +++R VG +F F S + S R Sbjct: 161 KYVMPTYAFANK-EKKNMYILVIEATIKHVRDILAMYVGTRNFHNFTSKKAYEDDSAKRY 219 Query: 172 IDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 I FD V + + + V +SF+ QIR +G + + G T +EKA + +D Sbjct: 220 IMQFDCGLPFVRNNLEFVTLTVKGQSFMLHQIRKMIGLMIGIVRGDATIEAMEKAWE-KD 278 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R + P AP GL + Y Sbjct: 279 RVDI-PRAPGLGLMLYQLHY 297 >gi|292655987|ref|YP_003535884.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2] gi|291370921|gb|ADE03148.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2] Length = 283 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 32/253 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVH 56 +R + Y+G Y G+QRQ + +++ +I A + E AGRTD+GV Sbjct: 1 MR-AFRVAYDGRPYHGFQRQPDVPTVEDAIFDACRALGVCDDDEEPTDYAAAGRTDAGVS 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL Q F+ P +ALN+ L T+ + FHAR RR Y+Y + Sbjct: 60 ALAQTVAFECPDWCTP----RALNSEL--PGTVRAWADADAPDDFHARHWPTRREYVYDL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + D + + A G HD FR++ +R ID Sbjct: 114 HA--------------PTEGFDDDRAKAAFDACRGDHD---FRNLTPDDHGTVRAIDG-G 155 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLA 234 + G+ + +RV A F +R V ++ VG + ++ AL D E A Sbjct: 156 LTRDGDFLLVRVEAGGFARELVRRLVSLVRAVGSDAAPLSKVDDALGPDHLDGPEGIAPA 215 Query: 235 PPEGLYFDSVEYS 247 PP L +V+Y Sbjct: 216 PPTPLLLTAVDYP 228 >gi|296423394|ref|XP_002841239.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637475|emb|CAZ85430.1| unnamed protein product [Tuber melanosporum] Length = 483 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 99/308 (32%), Gaps = 71/308 (23%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS----SIQGSIEKAIFL--------VTGEIVVVHG---- 47 + I Y G Y G++ N +I+ I KA+ + GE V G Sbjct: 26 IALRIAYLGGNYTGFEYHANSPNTTNTIEEHIFKALLKARLVPCNGIEGEEETVLGWPGD 85 Query: 48 -------AGRTDSGVHALRQVAHFDLVREWV----------------------------P 72 GRTD+GV A QV + Sbjct: 86 EVAEYSKCGRTDTGVSAFGQVIGVRVRSNRPLPKKPTDDVAEEGGEEGKEKTEFDDEKDE 145 Query: 73 VILCKALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + + LN L I +L F ARF+ +R Y Y + Sbjct: 146 LPYPQILNRLL--PKDIRVLAWCPHPPPTFSARFNCQQRHYRYFFTNPAIVPSPNSTV-- 201 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVNSFGN------- 182 +LD + MR AA+ VG HDF F + Q + R I H D+ Sbjct: 202 ---GNLDIDKMREAAKLYVGDHDFRNFCKLDASKQITRFDRVIHHADIVELPQSSPNNNP 258 Query: 183 -LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGL 239 + + +FL Q+R + L L+ G + + + L +++ RK +A L Sbjct: 259 KVYYFELHGSAFLWHQVRHMIAILFLIAQGLEQPSLVTEMLDISKNPRKPMYDIANDRAL 318 Query: 240 YFDSVEYS 247 + Sbjct: 319 VLWDCIFP 326 >gi|241955317|ref|XP_002420379.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36] gi|223643721|emb|CAX41457.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36] Length = 444 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 85/277 (30%), Gaps = 52/277 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M Y G Y G Q +++ KA+ V E V GRTD Sbjct: 86 MRFVAFKFAYLGWNYNGLALQGEPTPLPTVEEMFLKALAKVKLIKEPIEEVKFSRCGRTD 145 Query: 53 SGVHALRQVAHFDLVREWVPVI------------LCKALNAYLKISDTISILNLS-IVDK 99 GV A+ QV D+ LNA L I + ++ Sbjct: 146 KGVSAMNQVISIDVRSNLSLENQANPEFDDQEIDYISVLNANL--PSDIKVHSICLRPPP 203 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 +F ARFS + Y Y + L+ + M A G HDF F Sbjct: 204 EFDARFSCLSCHYRYI----------------FRKQDLNIDLMNQGANLYQGIHDFRNFC 247 Query: 160 SIH--CQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + Q ++ +R I + + + + +FL Q+R V L +G + + Sbjct: 248 KLDGSKQITNFVREIYQAQILHLHQDYYCFDLKGSAFLWHQVRCMVAILFSIGQELESPS 307 Query: 217 DLEKALQAQDRKECGPLAP----PE--GLYFDSVEYS 247 + + P P L E+ Sbjct: 308 IITDLMDMTK----YPTKPQYEMAHDIPLVLYDCEFP 340 >gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720] gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720] Length = 447 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 79/245 (32%), Gaps = 43/245 (17%) Query: 4 YCMIIEYNGSGYFG--WQRQKN-GSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 Y G Y G +Q + +++ I +A+ GRTD G Sbjct: 86 VAFRFAYMGWNYNGLNFQNEPTPLPTVEEEILQAMTKAKLVPEADPASCNFSRCGRTDKG 145 Query: 55 VHALRQVAHFDLVREWVPVILCKA------------LNAYLKISDTISILNLS-IVDKQF 101 V AL QV D+ LNA L I I + F Sbjct: 146 VSALNQVISLDVRSALSKEEHADKEKDVKELPYLTILNALL--PPDIRITAVCLRPPPNF 203 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 +ARFS R Y Y LD + M+ AA G HDF F I Sbjct: 204 NARFSCKYRHYKYL----------------FKKTDLDVDLMQEAALKYEGPHDFRNFCKI 247 Query: 162 H--CQASSPIRTIDHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 Q ++ R + + F + + +FL Q+R V L VG + + + Sbjct: 248 DGSKQITNHCREVYSARIEHFKDDFYVFDLKGTAFLWHQVRCMVAVLFSVGQKLESPSIV 307 Query: 219 EKALQ 223 + L Sbjct: 308 DDLLN 312 >gi|270692650|ref|ZP_06222951.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270316015|gb|EFA28055.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 115 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 61/106 (57%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M+ A Q L+G HDF++FR+ CQ+ +P R + H +V+ G I + + A +F+H +R+ Sbjct: 1 MQQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIGQYIIVDIQANAFVHHMVRNI 60 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VGSL VG G ++ L ++R+ P A P+GLY V Y Sbjct: 61 VGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYLVDVIYP 106 >gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi] Length = 423 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 100/276 (36%), Gaps = 59/276 (21%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 + + I Y G Y G+ Q++ +I+G + A+ E H GRTD GV Sbjct: 60 RKVLLQICYFGWSYHGFAVQEDSPMTIEGHLFNALSRTCLIRSRETSNYHRCGRTDKGVS 119 Query: 57 ALRQVAHFDL-----------------------VREWVPVILCKALNAYLKISDTISILN 93 A RQV +L + CK LN+ L I ++ Sbjct: 120 AFRQVVSIELRSNLLEGPGVFDYPECRAHSRPNPTTNEEIDYCKILNSNL--PPDIQVIA 177 Query: 94 LSI-VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + ++ F ARF R Y Y A D ++ A L+G Sbjct: 178 WAPLTNRDFSARFDCKIREYKYIFPLGAAR---------------DLSRIQEAGAKLLGS 222 Query: 153 HDFTTFRSIHCQAS--SPIRTIDHFDVNSFGN-------LIEIRVVARSFLHTQIRSFVG 203 HDF F + + IR + V+ + L+E+++V +FL QIR V Sbjct: 223 HDFRNFCKMDVSNGVLTYIRRMLEVSVSPLESSSTDSYSLVELKIVGNAFLWHQIRCIVT 282 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L +G G + +++ L + P P GL Sbjct: 283 VLFHIGQGLEEPSLIDELLDVEKH----PRRPQYGL 314 >gi|47206562|emb|CAF94488.1| unnamed protein product [Tetraodon nigroviridis] Length = 181 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 22/177 (12%) Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRI---ITRQAPLAL-EKGRAWLIPK-SLDCENMRIA 145 + + V FHARF A R+Y+YR+ I R++P+ L E G W + LD M A Sbjct: 1 VTHAYCVADNFHARFCAQSRTYVYRVALGICRKSPVPLPEHGFCWNLRDTELDVGGMCEA 60 Query: 146 AQHLVGRHDFTTFRSIHCQA--SSPIRTIDHFDVN-----------SFGNLIEIRVVARS 192 A LVG HDF++FR+++ +P++ +D + +E+ +RS Sbjct: 61 AALLVGVHDFSSFRAVNSDLPFKNPVKRLDAATIQTGVSFAQVHYHRVIPFLELIFTSRS 120 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 FL+ Q+R G+L VG G+ + L++ L+A+D P AP GL+ V+Y Sbjct: 121 FLYKQVRRMTGALVAVGQGRLSVAQLKEVLEARD-SLAYPQGLTAPAHGLFLTRVDY 176 >gi|189236260|ref|XP_974416.2| PREDICTED: similar to pseudouridylate synthase [Tribolium castaneum] Length = 275 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 38/235 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGV 55 + Y G Y G+ Q++ ++ +IE +F + ++ H GRTD GV Sbjct: 58 VLLKFLYLGWDYQGYVTQED--TV-NTIEHHVFNALIKTCLIENRSSANYHRCGRTDKGV 114 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 +L ++ + CK LN L + I + V+ F ARF R+Y Y Sbjct: 115 ISLDLRSNG--DDFESEINYCKILNRVL--PENIQFVAWCPVESAFSARFDCKNRTYKY- 169 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTID 173 + +LD + M+IAA +LVG HDF F + R I Sbjct: 170 ---------------FFPKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNIL 214 Query: 174 HFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 D++ ++ + + +FL QIR VG L LVG GK + L Sbjct: 215 SVDISLFQEDERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLD 269 >gi|91076290|ref|XP_968649.1| PREDICTED: similar to AGAP002409-PA [Tribolium castaneum] Length = 588 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 100/264 (37%), Gaps = 28/264 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTD 52 ++ +++ Y+G+ Y+G QR N +I+ KA++ + + A RTD Sbjct: 255 RKFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQFQRAARTD 314 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A RQV L + + + L + I + + V K F+++ RSY Sbjct: 315 KGVSAARQVVSLKLREDIDISKINEQL------PEVIRVFGIRRVTKGFNSKVQCDSRSY 368 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFRS----IHCQA 165 Y + T LD + Q +G +F F S A Sbjct: 369 TYLLPT--VSFTPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSA 426 Query: 166 SSPIRTI--DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++T+ + V I++ +SF+ QIR VG L V G + L+ L Sbjct: 427 KRYMKTLICEKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLD--LA 484 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 K P AP GL D V Y Sbjct: 485 FGMDKVNIPKAPGLGLLLDYVHYE 508 >gi|50556320|ref|XP_505568.1| YALI0F18216p [Yarrowia lipolytica] gi|49651438|emb|CAG78377.1| YALI0F18216p [Yarrowia lipolytica] Length = 443 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 40/249 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAI--FLVTGEIVVVH-----GAGRT 51 + + Y G Y G Q +I+G+I A+ + E + GRT Sbjct: 84 RKIAIRFSYLGWNYGGLAVQHEDTPLPTIEGTILSAMQRCRLIPESASLFDLDFSRCGRT 143 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQ 100 D GV A QV + + P A N + I I +++ + + Sbjct: 144 DRGVSAFSQVIALKVRSKLSPEEQQDAANDNKELNYIHILNQLLPPDIRIYSVALRLPEG 203 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F +RFS R Y Y + LD + MR AA+ +G HD+ F Sbjct: 204 FDSRFSCEYRHYRY----------------FFHKGDLDIDLMRQAAKLYLGEHDYRNFCK 247 Query: 161 IH--CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + Q + R + ++ ++ + R+FL Q+R + L LVG + Sbjct: 248 VDGSKQLAHHNRVMLEAEIEQLSDDIYYFNLKGRAFLWHQVRCMMAILFLVGQKLEKPSV 307 Query: 218 LEKALQAQD 226 + L + Sbjct: 308 ITDLLNPEK 316 >gi|167524395|ref|XP_001746533.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774803|gb|EDQ88429.1| predicted protein [Monosiga brevicollis MX1] Length = 415 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 101/266 (37%), Gaps = 34/266 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 +Y +++ + G+ Y G QR +I+ ++ +A+ + T + + RTD Sbjct: 32 KYALLMGFQGTSYAGMQRNIGFETIESTLLRALLVTGCIDKNNYETPQSMHFQRCARTDK 91 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA RQV R + LNA L D I I K F+ + + R Y Sbjct: 92 GVHAARQVVAM---RMILTENTVDELNAKL--PDDIRIFGAFRTTKGFNPKNACTGRRYE 146 Query: 114 YRIIT------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y + T + P+ + + + R + +G H F F + + Sbjct: 147 YLLPTYALMPKEKVPVP-----EYRVDEP-KLTWFRETLKRYIGTHKFHNFTAGKSASDD 200 Query: 168 PIRT-IDHFDV----NSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R I F V G + I+V +SF+ QIR +G + G +++ Sbjct: 201 SCRRYITDFTVSEPFEREGIEWVRIQVKGQSFILHQIRKMIGLAVAIVRGHVKDDYMDRC 260 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 D + P P GL+ D V + Sbjct: 261 FS--DERVDVPKIPGLGLFLDCVFFD 284 >gi|213513998|ref|NP_001134221.1| tRNA pseudouridine synthase A [Salmo salar] gi|209731596|gb|ACI66667.1| tRNA pseudouridine synthase A [Salmo salar] Length = 392 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 27/266 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY+G QR +I+ + A+ + + Sbjct: 50 RKVVLLLAYSGKGYYGMQRNAGSSQFKTIEDELVTALIKSGCIPDNHGDDMKKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV L W+ + + +N+ L I +L L V F+++ S Sbjct: 110 RTDKGVSAAGQVVSLKL---WMIEDVMEKINSNL--PPQIRVLGLKRVTGGFNSKNSCDA 164 Query: 110 RSYLYRIITRQA--PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-AS 166 R+Y Y + T K A + + + G H+F F S Sbjct: 165 RTYSYMLPTVAFSPKDYYTKNYAAFRLEPETLQRVNQLFGSYKGTHNFHNFTSQKAAWDP 224 Query: 167 SPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 S R I V EI V +SF+ QIR +G + V G L+++ Sbjct: 225 SARRYITEMSCGEPFVRGGAEFAEITVRGQSFMMHQIRKMIGLVIAVVKGYSGDEVLKRS 284 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 285 W--GEEKVDVPKAPGLGLVLEKVHFD 308 >gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans] gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans] Length = 443 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 39/243 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 89 VAFKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMNACKLVPSMVPQDYNFSRCGRTDKG 148 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLSIVDK-QFHA 103 V A+ QV + N + D I I + + F A Sbjct: 149 VSAMNQVISLHVRSNLTREEQQDEENDGREIDYIHILNQLLPDDIRISAVCLRPPTNFDA 208 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS R Y Y LD + M AA+ G HDF F + Sbjct: 209 RFSCQYRHYRYL----------------FHKDGLDIKKMEEAARMYEGEHDFRNFCKLDG 252 Query: 163 -CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ R I+ + S ++ + ++ +FL Q+R + +L L+G G +T L+ Sbjct: 253 SKQINNYKRNIERSRIISLSEDIYCLDLIGSAFLWHQVRCMMANLFLIGQGLEDTTLLKD 312 Query: 221 ALQ 223 + Sbjct: 313 LMD 315 >gi|270002527|gb|EEZ98974.1| hypothetical protein TcasGA2_TC004829 [Tribolium castaneum] Length = 390 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 100/264 (37%), Gaps = 28/264 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTD 52 ++ +++ Y+G+ Y+G QR N +I+ KA++ + + A RTD Sbjct: 57 RKFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQFQRAARTD 116 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A RQV L + + + L + I + + V K F+++ RSY Sbjct: 117 KGVSAARQVVSLKLREDIDISKINEQL------PEVIRVFGIRRVTKGFNSKVQCDSRSY 170 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFRS----IHCQA 165 Y + T LD + Q +G +F F S A Sbjct: 171 TYLLPT--VSFTPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSA 228 Query: 166 SSPIRTI--DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++T+ + V I++ +SF+ QIR VG L V G + L+ L Sbjct: 229 KRYMKTLICEKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLD--LA 286 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 K P AP GL D V Y Sbjct: 287 FGMDKVNIPKAPGLGLLLDYVHYE 310 >gi|150865972|ref|XP_001385404.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054] gi|149387228|gb|ABN67375.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054] Length = 465 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 91/280 (32%), Gaps = 52/280 (18%) Query: 1 MIRY-----CMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVH 46 M +Y + Y G Y G Q +++ + KA+ + T + Sbjct: 83 MNKYNKRFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMSRLITEPTPDKCKFS 142 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLK----------ISDTISILNLS- 95 GRTD GV A+ QV + N + + + I + + Sbjct: 143 RCGRTDKGVSAMNQVISLVVRSNLNEEEQLLKENDHKEIKYLSIINALLPPDIRMTAVCL 202 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 +F ARFS R Y Y LD E M A +G HDF Sbjct: 203 RPPPKFDARFSCDYRHYRYL----------------FKKHDLDIELMNEACIKYIGSHDF 246 Query: 156 TTFRSIH--CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 F I Q ++ +R + + + + + +FL Q+R V L L+G Sbjct: 247 RNFCKIDGSKQITNYVREVYSMKIIHLKDDFYAVDLKGSAFLWHQVRCMVAILFLIGQKL 306 Query: 213 WTSTDLEKA--LQAQDRKECGPLA---PPEGLYFDSVEYS 247 +T +E L+ K +A P L Y Sbjct: 307 EATTIIEDLFDLEKYPTKPVYEMANDIP---LVLYDCIYP 343 >gi|119504507|ref|ZP_01626586.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2080] gi|119459529|gb|EAW40625.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2080] Length = 226 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 64/109 (58%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 C M A+Q L+G HDF+ FR+ CQA+ P+R I VN G+ + + + A +FL+ + Sbjct: 99 CIAMHNASQILLGEHDFSAFRAAQCQAAHPVRQIFGVSVNRVGDFVILDIEANAFLYHMV 158 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 R+ VGSL++VG G+ +E+ L+ +DR G A GLY S+ Y Sbjct: 159 RNLVGSLQMVGSGQRPPEWIEQLLEGKDRTLGGDTASASGLYLQSITYP 207 >gi|158298322|ref|XP_318500.4| AGAP010807-PA [Anopheles gambiae str. PEST] gi|157014345|gb|EAA13705.4| AGAP010807-PA [Anopheles gambiae str. PEST] Length = 485 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 44/248 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ +I+ + A+ V E + GRTD GV A Sbjct: 76 ILLRFYYLGWDYQGFAAQEDSIETIEHHMFAALKKVCLIESRETSNYNRCGRTDKGVSAF 135 Query: 59 RQVAHFDLVREWVPVILCKALNA----------YLKISDTISILNLSI-VDKQFHARFSA 107 QV D+ ++ P + A N + + I L V+ + ARF Sbjct: 136 HQVISLDVRSKFAPELQLDANNLTNELDYCAMLNRVLPEEIRCLAWMPMVNPAYSARFDC 195 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQA 165 R+Y Y + L+ M +A++LVG HDF + Sbjct: 196 RSRTYRY----------------FFPRGDLNITAMEESARYLVGAHDFRNLCKMDVGNGV 239 Query: 166 SSPIRTIDHFDV-------NSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 S +R+ID + G +++ + + ++FL Q+R + L LVG G+ Sbjct: 240 VSFVRSIDAISIKPSQRDSERDGSSYDMMYLELQGKAFLWHQVRCIMAVLLLVGQGREKP 299 Query: 216 TDLEKALQ 223 + ++ L Sbjct: 300 SVVKDLLD 307 >gi|294790441|ref|ZP_06755599.1| tRNA pseudouridine synthase A [Scardovia inopinata F0304] gi|294458338|gb|EFG26691.1| tRNA pseudouridine synthase A [Scardovia inopinata F0304] Length = 382 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 41/220 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT------GEI------------- 42 +R + Y+G+ + GW RQ + ++QG +E AI V G+ Sbjct: 1 MRLKIDCSYDGTDFHGWARQPDLRTVQGELEAAIAKVLHLWQPAGQTADYPSAFAKALAN 60 Query: 43 --------VVVHGAGRTDSGVHALRQVAHFDLVR--------EWVPVIL--CKALNAYLK 84 + AGRTD+GVHA QV H DL + P AL L+ Sbjct: 61 QSAPVSFWPHLVVAGRTDTGVHARGQVCHLDLDQDLLGRAQGHLDPARFKPWDALTYRLR 120 Query: 85 --ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCEN 141 + D +S+ +S + F ARFSA R Y+YR+ Q + + + +S D + Sbjct: 121 RILPDDLSVSAISPAPEGFDARFSASDRVYVYRVADDQTSYDPRLRSFVLNLRRSTDIQI 180 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 M A +VG HDF +F + + + IR + + G Sbjct: 181 MNTALAEIVGLHDFGSFATPNP-GGTTIREVKYAHWRRVG 219 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D+ G L+E ++A +F H +RS V + VG GK + + R+ Sbjct: 290 YQIDILESG-LLEFTIIADAFAHNMVRSLVNASLQVGMGKKSLEWFLDKIHNPQREGASG 348 Query: 233 LAPPEGLYFDSVEYS 247 AP GL + V Y Sbjct: 349 PAPACGLTLEKVNYP 363 >gi|312385729|gb|EFR30155.1| hypothetical protein AND_00413 [Anopheles darlingi] Length = 443 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 96/261 (36%), Gaps = 27/261 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTDSGVH 56 +++ Y+G YFG QR +I+ + +A+ + + A RTD GV Sbjct: 108 ILLGYSGVDYFGMQRNPGTRTIEEDLLRAMLKQEWINDEGFRQPQQIQFQRAARTDKGVS 167 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV L ALN L I + + V K F+++ + R+Y Y + Sbjct: 168 AAVQVVSIKLPDNLD----VAALNGEL--PPQIRVYAVKRVTKGFNSKTNCDARTYTYTL 221 Query: 117 ITRQAPLALEKGR-AWLIPKSLD-CENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTID 173 T EK D + + +G +F F S + R I Sbjct: 222 PTIAFAANDEKDLDILTYRAPADRLQRVNEVLALYLGTKNFHNFTSRKEFIDPSVKRYIM 281 Query: 174 HFDV-------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 F+ + IR+ +SF+ QIR VG V G + +EKA Q+ Sbjct: 282 EFECGTPFVPDGTTAEFATIRIKGQSFMLHQIRKMVGLTLAVVRGLSQADIIEKAF-GQE 340 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R P AP GL + Y Sbjct: 341 R-YGIPTAPGLGLVLSRIHYD 360 >gi|241713555|ref|XP_002412103.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215505180|gb|EEC14674.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 398 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 65/290 (22%), Positives = 102/290 (35%), Gaps = 68/290 (23%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ ++++ ++ +A+ E H GRTD GV A Sbjct: 4 VALRFLYLGWNYDGYVVQEDTANTVEAALFQALQRTRLLDLRETSNYHRCGRTDKGVSAF 63 Query: 59 RQVAHFDLVREWVP-----------------------VILCKALNAYLKISDTISILNLS 95 QV DL + K LN L I +L + Sbjct: 64 SQVISIDLRSNLTEGPEGTAPSARSIHSVISVARSTELDYVKILNGVL--PPDIRVLAWA 121 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 + F ARF R+Y Y + +L + MR AA+ LVG HDF Sbjct: 122 PAEPSFSARFDCQARTYRYFLP----------------KGNLVVQRMREAAKLLVGEHDF 165 Query: 156 TTFRS--IHCQASSPIRTI---DHFDVNSFGN-------LIEIRVVARSFLHTQIRSFVG 203 + + +R I + +D G+ ++ + +V ++FL Q+R V Sbjct: 166 RNLCKMDVGNGVTRYVRRILSTELYDGEPEGDGGSSGYQMLCLEIVGQAFLWHQVRCIVA 225 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG------LYFDSVEYS 247 L LVG G + K L E P P G L ++ Sbjct: 226 ILLLVGQGLEEPEVVSKLLDV----EAHPCKPQYGMASEIPLVLYDCQFE 271 >gi|66805521|ref|XP_636482.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] gi|60464862|gb|EAL62978.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] Length = 491 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 95/305 (31%), Gaps = 83/305 (27%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G +FG+ Q + +I+ + KA + + +GRTD GV A Sbjct: 87 VAFKLSYVGWPFFGFAAQDCSEETIENYLIKAFLKTSLIPDIKTANYFKSGRTDKGVSAY 146 Query: 59 RQVAHFDLVREW------------------------------------------------ 70 QV + Sbjct: 147 GQVISLYVRSNLKEGEGIIPPKDQSGGPISNRTKSNKTELTKNNDNEKARKGNKKSIEDD 206 Query: 71 VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRA 130 + K LN L I IL + V F+ARFS + R+Y Y Sbjct: 207 EELPYIKMLNGVL--PPEIRILAWAPVPFHFNARFSTLSRTYKY---------------- 248 Query: 131 WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN--LIEIRV 188 + P LD M+ A++ +G H++ F I S +R I FD+ N L + Sbjct: 249 FFNPNGLDLNLMKEASKLYLGEHNYINFCKIDVNVKSFMRVILQFDIEKVENSELYVATI 308 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE------GLYFD 242 +FL QIR + L L+G K + + + L PP L Sbjct: 309 KGFAFLWHQIRCMMAVLFLIGQKKANISLITQLLD----TNKTITKPPYEMASEVPLVLF 364 Query: 243 SVEYS 247 Y Sbjct: 365 DCGYD 369 >gi|14318522|ref|NP_116655.1| Deg1p [Saccharomyces cerevisiae S288c] gi|399356|sp|P31115|PUS3_YEAST RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=Depressed growth-rate protein DEG1; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|836755|dbj|BAA09239.1| depressed growth-rate protein [Saccharomyces cerevisiae] gi|51013845|gb|AAT93216.1| YFL001W [Saccharomyces cerevisiae] gi|285811895|tpg|DAA12440.1| TPA: Deg1p [Saccharomyces cerevisiae S288c] Length = 442 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 83/241 (34%), Gaps = 39/241 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV ++ N + D I I + F A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDA 213 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS + R Y Y I + +L+ E M AA + VG DF F + Sbjct: 214 RFSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYFVGERDFRNFCKLDG 257 Query: 163 -CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ RTI + +V +FL Q+R + L LVG + + Sbjct: 258 SKQITNFKRTIISSKILPLSETFYCFDLVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLR 317 Query: 221 A 221 Sbjct: 318 L 318 >gi|145355737|ref|XP_001422107.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582347|gb|ABP00424.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 308 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 22/259 (8%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 + Y G+GY G QR +I+G +E AI G V A RTD GV Sbjct: 6 AVTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAARTDKGV 65 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ QV +V P + + +NA L + + + V F+A+ RR Y Y Sbjct: 66 SAVGQVVALKMV--LEPSGMVERINAAL--PERFEVFGIDRVTGGFNAKTMCDRRRYEYV 121 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRI--AAQHLVGRHDFTTFR-SIHCQASSPIRTI 172 I TR L A + R+ ++ G H+F + + + R I Sbjct: 122 IPTRAFDPNLGAEGAAEAFAFTEETRSRVDGVLKNYCGTHNFHNYTVKVKPTDAQAKRYI 181 Query: 173 DHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F+ + + +VV +SF+ QIR +G++ V G+ T D + AL + Sbjct: 182 ISFECSAPFEVEGEQFVRCQVVGQSFMLHQIRKLIGTMLAVVRGELTEDDQKFALLTHEF 241 Query: 228 KECGPLAPPEGLYFDSVEY 246 P+AP GL+ Y Sbjct: 242 VPT-PMAPELGLFLCECIY 259 >gi|323305104|gb|EGA58854.1| Deg1p [Saccharomyces cerevisiae FostersB] Length = 431 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 39/241 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 83 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKG 142 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV ++ N + D I I + F A Sbjct: 143 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDA 202 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS + R Y Y I + +L+ E M AA + VG DF F + Sbjct: 203 RFSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYFVGERDFRNFCKLDG 246 Query: 163 -CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ RTI + ++ +FL Q+R + L LVG + + Sbjct: 247 SKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLR 306 Query: 221 A 221 Sbjct: 307 L 307 >gi|190406572|gb|EDV09839.1| tRNA pseudouridine synthase 3 [Saccharomyces cerevisiae RM11-1a] gi|256268860|gb|EEU04212.1| Deg1p [Saccharomyces cerevisiae JAY291] gi|323309245|gb|EGA62466.1| Deg1p [Saccharomyces cerevisiae FostersO] Length = 442 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 39/241 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV ++ N + D I I + F A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDA 213 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS + R Y Y I + +L+ E M AA + VG DF F + Sbjct: 214 RFSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYFVGERDFRNFCKLDG 257 Query: 163 -CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ RTI + ++ +FL Q+R + L LVG + + Sbjct: 258 SKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLR 317 Query: 221 A 221 Sbjct: 318 L 318 >gi|151940762|gb|EDN59149.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789] Length = 442 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 39/241 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV ++ N + D I I + F A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDA 213 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS + R Y Y I + +L+ E M AA + VG DF F + Sbjct: 214 RFSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYFVGERDFRNFCKLDG 257 Query: 163 -CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ RTI + ++ +FL Q+R + L LVG + + Sbjct: 258 SKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLR 317 Query: 221 A 221 Sbjct: 318 L 318 >gi|297742024|emb|CBI33811.3| unnamed protein product [Vitis vinifera] Length = 402 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 64/286 (22%), Positives = 107/286 (37%), Gaps = 47/286 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-------------VHGAGR 50 + +++ Y+G+ + GWQ+Q +++QG +E ++ E V AGR Sbjct: 110 FKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGR 169 Query: 51 TDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GV AL+QV F ++ V V + A+N + ++++S V + FH FSA Sbjct: 170 TDKGVTALQQVCSFYTWKKDVKVQDIEDAING--AAPGKLRVISVSEVSRIFHPNFSAKW 227 Query: 110 RSYLYRIITRQAPL--------------ALEKGRAWLIPKSLDCENMRIAAQHLVGR--- 152 R Y Y + + R P + + + L G+ Sbjct: 228 RHYFYIFPLNDGDDGEQISENEMDIQKISFNENR--KKPSTFSISRVDQLLRQLEGKLLS 285 Query: 153 -----HDFTTFRSIHC-------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 D R+I A + + D ++ I +VA FL +R Sbjct: 286 YKIFARDTKASRNIGPPTECFVFHARATEARLQFSDDGEGTKVMCIELVANRFLRKMVRV 345 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V + L K + A R+ P APP+GL V + Sbjct: 346 LVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGF 391 >gi|156537085|ref|XP_001602396.1| PREDICTED: similar to pseudouridylate synthase [Nasonia vitripennis] Length = 421 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 89/246 (36%), Gaps = 44/246 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ S+I+ + A+ + E H GRTD GV A Sbjct: 73 IFLKFYYLGWDYQGFAAQEDTTSTIEYYLFAALTKSCLIESRETSNYHRCGRTDKGVSAF 132 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ P CK LN L I + S + ARF Sbjct: 133 SQVISLDIRSRLEPEKQDNLSDELHYCKMLNRLL--PKNIRCFSWSPAHPEMSARFDCKF 190 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASS 167 RSY Y + +L+ E M AA+ VG HDF + + Sbjct: 191 RSYKY----------------FFPRGNLNIEAMDKAAKLTVGSHDFRNLCKMDVANGVVN 234 Query: 168 PIRTIDHFDVN----------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 R I + V S ++ E+ + + +FL QIR +G L LVG + Sbjct: 235 FFRNIVNAQVTCIKREDPEKISGYDMCELSIKSNAFLWHQIRCIMGILLLVGREQEKPEV 294 Query: 218 LEKALQ 223 + L Sbjct: 295 ITDLLD 300 >gi|259146190|emb|CAY79449.1| Deg1p [Saccharomyces cerevisiae EC1118] Length = 442 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 39/241 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQNYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV ++ N + D I I + F A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDA 213 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS + R Y Y I + +L+ E M AA + VG DF F + Sbjct: 214 RFSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYFVGERDFRNFCKLDG 257 Query: 163 -CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ RTI + ++ +FL Q+R + L LVG + + Sbjct: 258 SKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLR 317 Query: 221 A 221 Sbjct: 318 L 318 >gi|307177137|gb|EFN66370.1| tRNA pseudouridine synthase 3 [Camponotus floridanus] Length = 345 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 99/271 (36%), Gaps = 45/271 (16%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q+ N +I+ + A+ + E H GRTD GV + Sbjct: 19 ILLKFYYLGWDYHGFTVQEDNNDTIEHHLFTALLKSCCIESRESANYHRCGRTDKGVSSF 78 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ P CK LN L I + V F ARF Sbjct: 79 SQVISLDIRSRLEPENQHNLSEELPYCKILNRLL--PTNIRCIAWCPVSPNFSARFDCKY 136 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASS 167 R+Y Y + +LD + M + ++ +G HDF + + Sbjct: 137 RTYKY----------------FFPKSNLDIDAMDKSVKYAIGDHDFRNICKMDVANGVIN 180 Query: 168 PIRTIDHFDVN---------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 RT+ V+ + N+ E+ + +++FL QIR +G L LVG K + Sbjct: 181 FKRTVIDAKVSMSNQNVEKITGYNMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEII 240 Query: 219 EKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 K L + +K +A L +Y Sbjct: 241 LKLLNIETCPQKPQYNMAHEVPLNLWYCDYE 271 >gi|325115883|emb|CBZ51437.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool] Length = 475 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 82/229 (35%), Gaps = 38/229 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + + Y+GS Y G Q +++G++ A+ ++ +A + Sbjct: 89 FLLKLAYDGSAYSGIAYQGENSAVRTVEGALFDALEK----TCLI-------RDRNAWQP 137 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + + A+ + I I+ + V F ARF R Y Y Sbjct: 138 AKRLFPEENYDYAAVLNAV-----LPGDIRIVASAPVPPGFDARFDCTGRVYKY------ 186 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS 179 + + LD M AAQ VG H+F F + Q +P RT+ F + Sbjct: 187 ----------FFHSEGLDLPRMHRAAQRFVGEHNFRYFCKLDPRQYRNPRRTLTSFAIEP 236 Query: 180 FGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 G+ + RSFL Q+R + +L VG G + L + Sbjct: 237 VGDSACAVATIAGRSFLWHQVRFMMAALLKVGRGTCDEAYIVGLLNRGE 285 >gi|126459314|ref|YP_001055592.1| tRNA pseudouridine synthase ACD [Pyrobaculum calidifontis JCM 11548] gi|166228753|sp|A3MU09|TRUA_PYRCJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126249035|gb|ABO08126.1| Pseudouridylate synthase [Pyrobaculum calidifontis JCM 11548] Length = 257 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 36/248 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + Y+G+ + G+ N +E A+ V G ++ RTD GV A+ Sbjct: 1 MP-YLYRVAYDGALFHGFTGHSNS------VEAALRRVFGH--LLGRGSRTDPGVSAVGN 51 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + L + ++ V + F+ R + R YLY Sbjct: 52 AVL--APSRLPLGYINSRL------PRGVWTWAVAEVGEGFNPRRARRR-RYLYVAP--- 99 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS 179 D E MR A+ G HDF++F + +P + T+D V Sbjct: 100 -------------HWGEDVEAMREVAELFKGTHDFSSFIQFRGERGTPPVTTVDEVGVEV 146 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+ + V + F + QIR ++ G G + +E+ L+ + R P AP EGL Sbjct: 147 AGRLVYLYFVGKGFRNKQIRKMAWAILAAGRGVVSRRYVEELLE-RPRPGAVPSAPAEGL 205 Query: 240 YFDSVEYS 247 +EY Sbjct: 206 ILLDIEYD 213 >gi|46138645|ref|XP_391013.1| hypothetical protein FG10837.1 [Gibberella zeae PH-1] Length = 538 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 96/335 (28%), Gaps = 94/335 (28%) Query: 2 IRY-CMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFL-----------VTGEIVVVHG 47 RY + + Y G Y G++ Q N SI+ + A+ V + Sbjct: 60 TRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPEDERIVDFDCCEYSK 119 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKAL---------------NA----------- 81 GRTD GV A QV + + + NA Sbjct: 120 CGRTDKGVSAFGQVIGLRVRSARPVPKKRRRMSEAGEAMVVDEQSGENAEEEVEDNTPPF 179 Query: 82 -------------YLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIIT---RQAPLA 124 + I IL F ARFS R Y Y P A Sbjct: 180 DPIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPSA 239 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNSFGN 182 W LD E MR AA+ G HDF F I Q ++ RTI D+ + Sbjct: 240 GGARNGW-----LDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNFERTIYEADIEEVQD 294 Query: 183 ----------------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + +V +FL QIR V L L G T Sbjct: 295 VSSALPYLSSPQFAPAEGLPTDDAKYPKVYCFKVRGSAFLWHQIRHMVAVLFLAGQRLET 354 Query: 215 STDLEKALQ-AQDR-KECGPLAPPEGLYFDSVEYS 247 + L A++ K +A L + Sbjct: 355 PDVVTTMLDVAKNPCKPNYVMADEVPLVLWDCIFP 389 >gi|169854752|ref|XP_001834048.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130] gi|116504845|gb|EAU87740.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130] Length = 511 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 95/332 (28%), Gaps = 102/332 (30%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVT-------GEIVVVHGAGRT 51 + + Y G Y G Q + +++G + A+ E GRT Sbjct: 58 RKIALKFSYAGWDYGGLAYQPDDTPLPTVEGVLFDALSTAHLVDSNAGLEGCGWERCGRT 117 Query: 52 DSGVHALRQVAHFDL-----------------VREWVPVILCKALNAYLKISD------- 87 D GV RQ+ + + P A++ + + Sbjct: 118 DRGVSGARQIVSVWVRSALRKEELAEADIRPGPVAFPPNSRRAAMDDDDDLPERVDDEPV 177 Query: 88 ---------------------------------TISILNLSIVDKQFHARFSAIRRSYLY 114 TI + S V F ARFS R Y Y Sbjct: 178 IVNGQDLWKPDTVEPQSRNEHDYVSILNRLLPETIRVSAWSPVPSTFSARFSCNFRHYKY 237 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTI 172 + PK LD M+ AA L+G HDF + Q +S R + Sbjct: 238 ----------------FFTPKGLDIVRMQEAAGRLIGEHDFRNLCKLDPAKQITSFKRKV 281 Query: 173 DHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ------ 225 + NL + +FL+ Q+R + L L+G G + + + L Sbjct: 282 MSAHIERLNDNLHVFNLTGSAFLYHQVRHIMAILFLIGMGMESPSLVSNLLNVTSDSEVP 341 Query: 226 ----------DRKECGPLAPPEGLYFDSVEYS 247 DRK +A L Y Sbjct: 342 RADDLPYEIVDRKPEYQMADGLPLMLWDCGYP 373 >gi|296005181|ref|XP_001351959.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] gi|225631808|emb|CAD51770.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] Length = 312 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 25/221 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVHAL 58 + +++ Y G + G QK N ++++ + + ++ + + RTD GV A Sbjct: 6 NFLILLSYFGMEFNGSAYQKDNDNTVENKLLENLYKLELIDNYDTPLSRVSRTDKGVSAR 65 Query: 59 RQVAHFDLVREWVPVILCK----ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 + L ++ V + + + K I I ++ V F AR + I+R+Y+Y Sbjct: 66 INGINLRLNIKYENVPIFEIEKKYVKELKKKLKNIHIHDIKHVSNTFDARLNCIQRTYVY 125 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I K+ + E M+ AA+ +G HDF+ +S RT+ Sbjct: 126 FFIN----------------KNYNIEKMKKAAKLFIGEHDFSNCCKKGKNVTSNRRTVLK 169 Query: 175 FDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 FD+ + + ++ SFL+ QIR V L LVG G Sbjct: 170 FDIRNIDKHFYYFKIKGISFLYNQIRHMVAILFLVGKGLLD 210 >gi|221054442|ref|XP_002258360.1| tRNA pseudouridine synthase [Plasmodium knowlesi strain H] gi|193808429|emb|CAQ39132.1| tRNA pseudouridine synthase, putative [Plasmodium knowlesi strain H] Length = 306 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 32/253 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIF---LVTGEIVVVHGAGRTDSGVHAL 58 ++ + Y G G+ G QK N ++++ + + L++G RTD GV A Sbjct: 6 KFIIFFSYVGMGFNGSAYQKDNPNTVENRLMDCLHDMNLISGVDQPFSRVSRTDKGVSAR 65 Query: 59 RQVAHFDLVREWVPVIL-------CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 L + L K +N L + ++++ V F AR + I R+ Sbjct: 66 MNALTIRLKIRHPHMTLQDIQRVYVKEINKKL---KNMQVIDIRSVPNFFDARLNCIHRT 122 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 YLY + I K+ + + ++ + VG HDF+ F ++ RT Sbjct: 123 YLY----------------FFIDKNYNFDRIKQGCKLFVGEHDFSNFCKKRKNSTCFRRT 166 Query: 172 IDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA-QDRKE 229 I F+V N ++ SFL+ QIR V +L VG G DL L K+ Sbjct: 167 ILKFEVRRMDKNFHYFKIKGTSFLYNQIRHMVAALFQVGTGNLALGDLANMLNNHPSSKK 226 Query: 230 CGPLAPPEGLYFD 242 +A +GL Sbjct: 227 NFQIANEDGLLLY 239 >gi|294656526|ref|XP_458796.2| DEHA2D07722p [Debaryomyces hansenii CBS767] gi|199431537|emb|CAG86940.2| DEHA2D07722p [Debaryomyces hansenii] Length = 444 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 79/241 (32%), Gaps = 39/241 (16%) Query: 4 YCMIIEYNGSGYFG--WQRQKN-GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G +Q + +++ I KA+ V GRTD G Sbjct: 86 IALRFAYVGWDYNGLNFQYEPTPLPTVEEEILKALAKSKLITQVDPACCNFSRCGRTDKG 145 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV D+ +P + N + I I + +F A Sbjct: 146 VSAMNQVISLDVRSNLIPEDQLSSSNDDKELPYLAILNSLLPTDIRITAVCLRPPPKFDA 205 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS R Y Y LD + M+ A+ G DF F I Sbjct: 206 RFSCSYRHYRYI----------------FRKYDLDLDLMQEGAKRYEGVRDFRNFCKIDG 249 Query: 163 -CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ R + ++ + + +FL Q+R + L VG + ++ Sbjct: 250 SKQITNYKREVLSANIIHLRDDFYIFDLKGSAFLWHQVRCMMAVLFAVGQKLEAPSIIDD 309 Query: 221 A 221 Sbjct: 310 L 310 >gi|195122857|ref|XP_002005927.1| GI20747 [Drosophila mojavensis] gi|193910995|gb|EDW09862.1| GI20747 [Drosophila mojavensis] Length = 500 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 97/266 (36%), Gaps = 46/266 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 M I Y G Y G+ Q++ +I+G + +A+ H GRTD V A Sbjct: 103 VLMKITYFGWDYQGFACQEDSADTIEGYLFRALERTCLIESRATSNYHRCGRTDKEVSAF 162 Query: 59 RQVAHFDLVREWVPVILCK--ALNA--------YLKISDTI-SILNLSIVDKQFHARFSA 107 QV +L + P K +LN + I + + + + + ARF Sbjct: 163 CQVISINLRSKHSPDTQMKPESLNTEIDYCSLLNRVLPKNIQCVSWMPLRNPDYSARFDC 222 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQA 165 I R+Y Y + LD ++M+ A Q LV DF F +H Sbjct: 223 ISRTYRY----------------YFPKGDLDIDSMQQACQLLVCHGDFRNFCKMDVHNGV 266 Query: 166 SSPIRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 ++ +R + H ++ N + + + A +FL QIR + L LVG Sbjct: 267 TNYMRNLQHAEIRPCDNTERQLEQNSGYIMYYLEIKANAFLWHQIRCIMAVLLLVGQKNE 326 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGL 239 + + K L P GL Sbjct: 327 QPSIITKLLDVGSNPCKPQYTPAIGL 352 >gi|219122763|ref|XP_002181709.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406985|gb|EEC46923.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 421 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 104/340 (30%), Gaps = 97/340 (28%) Query: 5 CMIIEYNGSGYFGW-------QRQKNG-----------------------SSIQGSIEKA 34 + + Y+G ++GW R+ N S+QG I+ Sbjct: 72 LLHVSYDGRQFYGWSSGNDPKDRESNAARPRYSTRSRRRRRNRGNYDGTVRSVQGEIQYC 131 Query: 35 IFLVTG----EIVVVHGAGRTDSGVHALRQVAHFDL-------------VREWVPVILCK 77 + V G + VVV G RTD GVHA +A Sbjct: 132 LSKVYGNIDPQRVVVEGCSRTDKGVHARGMMAQIYCLHETTSPNDDPVVDWSIPGKRQPH 191 Query: 78 ALNA--------------------YLKISDTISILNLSIVDKQ-------------FHAR 104 NA + ISI+ ++ FH Sbjct: 192 PRNATDTSYFTQLPMNLTKLAFTLNRMLPHDISIMGIAPTPHPHVTGCNPAISALPFHPT 251 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFRSI 161 S ++Y Y + ++ W + +++ + A Q L G H+F F+ Sbjct: 252 LSCRHKTYRYVVSVGTRADPTKRLYVWHLDRAISTFSLDQAEQACQILQGSHNFAAFQGA 311 Query: 162 HCQASSPIR-------------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 + + I+ I H + V FL+ IR VG++ V Sbjct: 312 PRGSDNKIKFTMRNTTCQLISIRIQHQSTWLDTETYVVSVTGDRFLYKMIRFLVGTVVGV 371 Query: 209 GDGKWTSTDLEKALQAQDRKE-CGPLAPPEGLYFDSVEYS 247 G GK T ++ L Q R APP L + VEY Sbjct: 372 GTGKLTLDNVAAMLLTQSRNNLQVECAPPHALVLEHVEYD 411 >gi|303288890|ref|XP_003063733.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454801|gb|EEH52106.1| predicted protein [Micromonas pusilla CCMP1545] Length = 313 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 100/263 (38%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + + + Y G GY G QR +I+ +EKAI G V A RTD Sbjct: 2 RKVAIFLAYVGKGYQGMQRNPGAVTIEDELEKAIVAAGGISDLNAGDFAKVQWMRAARTD 61 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ Q +V P + +NA L + V F+A+ RR Y Sbjct: 62 KGVSAVGQCVSLRMV--IDPPGVIDRVNAAL--PEGFEFFGYERVTGGFNAKTMCDRRRY 117 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDC---ENMRIAAQHLVGRHDFTTFR-SIHCQASSP 168 Y + + + P D + + + VG H+F F + S Sbjct: 118 EYVVPVKAFDPRAKNSDDASPPFEFDETMRQRVNKILGNYVGTHNFHNFTVRVSPDEPSA 177 Query: 169 IRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R I FD ++ + VV +SF+ QIR +G + V G W+ D AL Sbjct: 178 MRYIISFDCSAPFVVDGVAFVRCVVVGQSFMLHQIRKLIGMMLGVIRGAWSEEDQLFALN 237 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 ++ P+AP GL+ Y Sbjct: 238 TKE-SVNVPMAPELGLFLCECIY 259 >gi|323337774|gb|EGA79017.1| Deg1p [Saccharomyces cerevisiae Vin13] Length = 442 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 39/241 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQBYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTISILNLS-IVDKQFHA 103 V A+ QV ++ N + D I I + F A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDA 213 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH- 162 RFS + R Y Y I + +L+ E M AA + VG DF F + Sbjct: 214 RFSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYFVGERDFRNFCKLDG 257 Query: 163 -CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ RTI + ++ +FL Q+R + L LVG + + Sbjct: 258 SKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLR 317 Query: 221 A 221 Sbjct: 318 L 318 >gi|294461715|gb|ADE76416.1| unknown [Picea sitchensis] Length = 448 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 113/315 (35%), Gaps = 74/315 (23%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-------------VVVHGAGR 50 + +++ Y+G+ + GWQ+Q +++QG +EK++ E V AGR Sbjct: 126 FKIVLSYDGNLFDGWQKQPGMNTVQGLVEKSLGKFVDEKKAQELEAKKASVEAAVAVAGR 185 Query: 51 TDSGVHALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GV A +QV F R + + +NA + ++++S V ++FH FSA Sbjct: 186 TDKGVSAFQQVCSFYTWRKDTSLEDIESEINAAAL--GKLKVVSISEVSREFHPNFSAKW 243 Query: 110 RSYLYRIITRQ----------------------------------------APLALEKGR 129 R YLY + + A K + Sbjct: 244 RRYLYILPLKDGEGNKTVVDGGSPVTYDSLCLADEGGNQSTDMNVINMEAMNISATGKHQ 303 Query: 130 AWLIPKSLDCENMRIAAQHLVGR--------HDFTTFRSIHCQASSPIRTIDHF------ 175 A + P + + + + Q L G+ D RS + Sbjct: 304 ASVKPHNFNVDTVNQLLQQLEGQSLSYRIFARDTQASRSRGPATECFMHHARAAVATLPY 363 Query: 176 ---DVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D S G + + +VA FL +R V + T +L K + A R+ Sbjct: 364 MGQDHTSKGRTVMCVELVANRFLRKMVRVLVATAVREAAAGATPDNLLKLMHATCRRASA 423 Query: 232 PLAPPEGLYFDSVEY 246 P APPEGL + Y Sbjct: 424 PPAPPEGLCLVDIGY 438 >gi|134114618|ref|XP_774017.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256647|gb|EAL19370.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var. neoformans B-3501A] Length = 514 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 96/321 (29%), Gaps = 90/321 (28%) Query: 4 YCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV-------TGEIVVVHGAG 49 ++I Y+G Y G Q +++ + A+ E G Sbjct: 75 IALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGRCG 134 Query: 50 RTDSGVHALRQVAHFDL------------------------------------------- 66 RTD GV QV + + Sbjct: 135 RTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAVEPEVEKMEKTVIVQEDEEKGVK 194 Query: 67 ---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 R+ K LN+ L +I IL S + F +RFS R Y Y Sbjct: 195 EKKSKVIQPPRQPSEFPYPKLLNSVL--PPSIRILAWSPIPASFDSRFSCTYRHYRYAFH 252 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHF 175 TR P + E LD E MR AQ L+G HD+ F + Q + R + Sbjct: 253 TRPTPTSPE----------LDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTRGVLKA 302 Query: 176 DVNSF------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 ++ ++ +FL Q+R + L LVG + + L + R Sbjct: 303 WFEGGESQGVGDGMMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVK-RFP 361 Query: 230 CGP---LAPPEGLYFDSVEYS 247 P + P L Y Sbjct: 362 SKPNYTMGHPLPLTLHHCGYP 382 >gi|328876653|gb|EGG25016.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum] Length = 542 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 33/275 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 + + Y+G+ Y G Q+ S+I+ +EKA F + + RTD Sbjct: 117 KIAFCVGYSGTNYCGMQKNWGYSTIEEELEKACFKTGSISPNNFYSQRKIDWIRCARTDK 176 Query: 54 GVHALRQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+R + L + L A+N++L + I + + V+ FHA+ RSY Sbjct: 177 GVSAVRNMVSCKLEYDPPTLEELKNAINSHL--PEDIKVFGIKRVNNSFHAKNCVDGRSY 234 Query: 113 LYRIITRQAPLALE---KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSP 168 LY T + + ++ + + +G H F + S S Sbjct: 235 LYITPTFAFEPVHATSGRPETYKFDET-ERSRVNSMLAMFLGTHKFHNYTSRKDSGDPSA 293 Query: 169 IRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGD---------GKWT 214 RT+ F + + I ++ SF+ QIR +G + V + Sbjct: 294 KRTMSLFQCSEPFVMEGIEFVSINIIGGSFMLHQIRKMIGFVMSVMRRGFFWEKNNDTES 353 Query: 215 STDLEKALQA--QDRKECGPLAPPEGLYFDSVEYS 247 + K + A R+ P+AP GL D+ + Sbjct: 354 LDYVRKIITATLCHRQFNLPMAPGTGLMLDACLFD 388 >gi|302023348|ref|ZP_07248559.1| tRNA pseudouridine synthase A [Streptococcus suis 05HAS68] Length = 124 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 2/123 (1%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DVNSFGNLI 184 + A P LD + A Q LVG HDFT F + +RTI + + + Sbjct: 1 RHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTIKAASMEYDQRRQFL 60 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A GLY + Sbjct: 61 IFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRSLAGPTAAGNGLYLKEI 120 Query: 245 EYS 247 Y Sbjct: 121 IYE 123 >gi|70166599|ref|NP_001002019.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo sapiens] gi|70166634|ref|NP_001002020.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo sapiens] gi|12804097|gb|AAH02901.1| Pseudouridylate synthase 1 [Homo sapiens] gi|123989720|gb|ABM83888.1| pseudouridylate synthase 1 [synthetic construct] gi|123999259|gb|ABM87208.1| pseudouridylate synthase 1 [synthetic construct] gi|158257916|dbj|BAF84931.1| unnamed protein product [Homo sapiens] gi|311347139|gb|ADP90495.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347142|gb|ADP90497.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347145|gb|ADP90499.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347148|gb|ADP90501.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347151|gb|ADP90503.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347154|gb|ADP90505.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347157|gb|ADP90507.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347160|gb|ADP90509.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347163|gb|ADP90511.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347166|gb|ADP90513.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347169|gb|ADP90515.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347172|gb|ADP90517.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347175|gb|ADP90519.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347178|gb|ADP90521.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347181|gb|ADP90523.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347184|gb|ADP90525.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347187|gb|ADP90527.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347190|gb|ADP90529.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347193|gb|ADP90531.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347196|gb|ADP90533.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347199|gb|ADP90535.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347202|gb|ADP90537.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347205|gb|ADP90539.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347208|gb|ADP90541.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347211|gb|ADP90543.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347214|gb|ADP90545.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347217|gb|ADP90547.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347220|gb|ADP90549.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347223|gb|ADP90551.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347226|gb|ADP90553.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347229|gb|ADP90555.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347232|gb|ADP90557.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347235|gb|ADP90559.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347238|gb|ADP90561.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347241|gb|ADP90563.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347244|gb|ADP90565.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347247|gb|ADP90567.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347250|gb|ADP90569.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347253|gb|ADP90571.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347256|gb|ADP90573.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] Length = 399 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 56 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 115 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 116 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDA 170 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 171 RTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQD 228 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I IRV +SF+ QIR VG + + G + LE+ Sbjct: 229 PSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 288 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 289 SW--GTEKVDVPKAPGLGLVLERVHFE 313 >gi|114647862|ref|XP_001139560.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan troglodytes] Length = 427 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 84 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 143 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 144 RTDKGVSAAGQVVSL---KVWLIEDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDA 198 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 199 RTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQD 256 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I IRV +SF+ QIR VG + + G + LE+ Sbjct: 257 PSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 316 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 317 SW--GTEKVDVPKAPGLGLVLERVHFE 341 >gi|58271292|ref|XP_572802.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans JEC21] gi|57229061|gb|AAW45495.1| pseudouridylate synthase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 514 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 96/321 (29%), Gaps = 90/321 (28%) Query: 4 YCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV-------TGEIVVVHGAG 49 ++I Y+G Y G Q +++ + A+ E G Sbjct: 75 IALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGRCG 134 Query: 50 RTDSGVHALRQVAHFDL------------------------------------------- 66 RTD GV QV + + Sbjct: 135 RTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAVEPEVEKMEKTVIVQEDEEKGVK 194 Query: 67 ---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 R+ K LN+ L +I IL S + F +RFS R Y Y Sbjct: 195 EKKSKVIQPPRQPSEFPYPKLLNSVL--PPSIRILAWSPIPASFDSRFSCTYRHYRYAFH 252 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHF 175 TR P + E LD E MR AQ L+G HD+ F + Q + R + Sbjct: 253 TRPTPTSPE----------LDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTRGVLKA 302 Query: 176 DVNSF------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 ++ ++ +FL Q+R + L LVG + + L + R Sbjct: 303 WFEGGKSQGVGDGMMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVK-RFP 361 Query: 230 CGP---LAPPEGLYFDSVEYS 247 P + P L Y Sbjct: 362 SKPNYTMGHPLPLTLHHCGYP 382 >gi|324501041|gb|ADY40469.1| tRNA pseudouridine synthase tag-124 [Ascaris suum] gi|324504466|gb|ADY41930.1| tRNA pseudouridine synthase tag-124 [Ascaris suum] Length = 388 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 101/288 (35%), Gaps = 69/288 (23%) Query: 10 YNGSGYFGW-QRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHALRQVA-- 62 Y G Y G Q+Q ++++ I+ A+ + +GRTD GV A RQ+A Sbjct: 4 YYGWEYEGLVQQQDTVNTVEEVIKDALLRTRLIESWNKCEWIRSGRTDKGVSAFRQIASL 63 Query: 63 ----------HFDLVREWVPVI----------LCKALNAYLKISDTISILNLSIVDKQFH 102 H P K LN L I +L + V F+ Sbjct: 64 IVRSSDPEGEHVFWPENADPHSRITPPHSELMYLKMLNGVL--PKNIRVLAWAPVALDFN 121 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARFS +R Y Y A +G D E +R A L+G HDF I Sbjct: 122 ARFSCTKRVYKY---------AFPRG-------DFDLEAIRKACSLLIGEHDFRNICRID 165 Query: 163 CQAS----SPIRTI------------DHFDVNSFGN------LIEIRVVARSFLHTQIRS 200 + S +R + + +V+S L+E +++ FL QIR Sbjct: 166 LNKARVEMSYVRMVFDASISVVLESGERVEVSSEPEPHSPYSLVEFTMISSGFLWHQIRC 225 Query: 201 FVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 + + +G G + + L + RK LAP L Y Sbjct: 226 VMALMYEIGKGNEKPEVISELLDIEKTPRKPAYGLAPSSPLCLFDCSY 273 >gi|307184937|gb|EFN71202.1| tRNA pseudouridine synthase A [Camponotus floridanus] Length = 330 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 100/287 (34%), Gaps = 50/287 (17%) Query: 1 MIRYC-----MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVH 46 M + +++ Y G Y+G QR +I+ + A+ + Sbjct: 40 MQKIKRKNHAILLGYLGKDYYGMQRNPGMKTIEEDLVTALLKADLITTEHFKNIRSISFQ 99 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 A RTD GV A+RQ+ L + ++ K L D I I + V K F+++ Sbjct: 100 RAARTDKGVSAIRQIVSLKLPEKPDKTVINKFL------PDVIKIFGIKRVTKGFNSKNQ 153 Query: 107 AIRRSYLYRIIT---RQAPLALEK------------------GRAWLIPK--SLDCENMR 143 R+Y Y I T L L K G++++ + + Sbjct: 154 CDARTYRYIIPTFAFAPEDLTLLKIGEEINEEERIKQLSTIDGKSYVDYRLSPESLNRLN 213 Query: 144 IAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQ 197 + + G H+F F + R I F + + +SF+ Q Sbjct: 214 SILKLMEGTHNFHNFTSKVKPLDPRAQRYIIKFHCVETFISNGMEFAILEIKGQSFMLHQ 273 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 IR V + + + + +A + DR E P+AP GL V Sbjct: 274 IRKMVAVVVGIARNIISEEIINEAFKTMDRLEI-PIAPSLGLCLCHV 319 >gi|70166645|ref|NP_079491.2| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Homo sapiens] gi|114152895|sp|Q9Y606|TRUA_HUMAN RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|18027830|gb|AAL55876.1|AF318369_1 unknown [Homo sapiens] gi|94466373|gb|AAH09505.2| Pseudouridylate synthase 1 [Homo sapiens] gi|94466377|gb|AAH19320.2| Pseudouridylate synthase 1 [Homo sapiens] gi|193786660|dbj|BAG51983.1| unnamed protein product [Homo sapiens] gi|261860288|dbj|BAI46666.1| pseudouridylate synthase 1 [synthetic construct] gi|311347138|gb|ADP90494.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347141|gb|ADP90496.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347144|gb|ADP90498.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347147|gb|ADP90500.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347150|gb|ADP90502.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347153|gb|ADP90504.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347156|gb|ADP90506.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347159|gb|ADP90508.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347162|gb|ADP90510.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347165|gb|ADP90512.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347168|gb|ADP90514.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347171|gb|ADP90516.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347174|gb|ADP90518.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347177|gb|ADP90520.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347180|gb|ADP90522.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347183|gb|ADP90524.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347186|gb|ADP90526.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347189|gb|ADP90528.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347192|gb|ADP90530.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347195|gb|ADP90532.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347198|gb|ADP90534.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347201|gb|ADP90536.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347204|gb|ADP90538.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347207|gb|ADP90540.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347210|gb|ADP90542.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347213|gb|ADP90544.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347216|gb|ADP90546.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347219|gb|ADP90548.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347222|gb|ADP90550.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347225|gb|ADP90552.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347228|gb|ADP90554.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347231|gb|ADP90556.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347234|gb|ADP90558.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347237|gb|ADP90560.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347240|gb|ADP90562.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347243|gb|ADP90564.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347246|gb|ADP90566.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347249|gb|ADP90568.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347252|gb|ADP90570.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347255|gb|ADP90572.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] Length = 427 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 84 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 143 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 144 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDA 198 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 199 RTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQD 256 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I IRV +SF+ QIR VG + + G + LE+ Sbjct: 257 PSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 316 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 317 SW--GTEKVDVPKAPGLGLVLERVHFE 341 >gi|4455035|gb|AAD21042.1| pseudouridine synthase 1 [Homo sapiens] Length = 365 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 22 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 81 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 82 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDA 136 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 137 RTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQD 194 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I IRV +SF+ QIR VG + + G + LE+ Sbjct: 195 PSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 254 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 255 SW--GTEKVDVPKAPGLGLVLERVHFE 279 >gi|119618938|gb|EAW98532.1| pseudouridylate synthase 1, isoform CRA_c [Homo sapiens] Length = 432 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 89 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 148 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 149 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDA 203 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 204 RTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQD 261 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I IRV +SF+ QIR VG + + G + LE+ Sbjct: 262 PSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 321 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 322 SW--GTEKVDVPKAPGLGLVLERVHFE 346 >gi|73994983|ref|XP_852307.1| PREDICTED: similar to tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Canis familiaris] Length = 409 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 101/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 61 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRCA 120 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 121 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCDA 175 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 176 RTYFYMLPT--FAFAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQKGPQE 233 Query: 166 SSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 +S R I + V I+V +SF+ QIR VG L + G + LE+ Sbjct: 234 ASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVLER 293 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + D K P AP GL + V + Sbjct: 294 SW--GDAKVDVPKAPGLGLVLERVHFE 318 >gi|195055095|ref|XP_001994456.1| GH16145 [Drosophila grimshawi] gi|193892219|gb|EDV91085.1| GH16145 [Drosophila grimshawi] Length = 395 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 103/263 (39%), Gaps = 28/263 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 61 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHNWITEDSFKQVQIASFQRAARTDKGV 120 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E V K L +TI + + V K F+A+ R+Y Y Sbjct: 121 SAARQVCSIKLPDELDLVAFNKDL------PETIRLFGVERVTKGFNAKEQCNARTYTYT 174 Query: 116 IITRQAPLALE----KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIR 170 + + E + +A E + + G +F F S S R Sbjct: 175 LPSIAFAGCNEQQNQQDQATFRLTPALHEQICETLKLYEGTKNFHNFTSKKNFLDPSAKR 234 Query: 171 TIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 I F ++ + ++V +SF+ QIR VG + G T LE+AL Sbjct: 235 FIMSFTSSAPFHSPQGIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTRITLERALTE 294 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 + + P+AP GL D+V Y Sbjct: 295 E--RLDLPMAPGLGLVLDTVHYE 315 >gi|323454992|gb|EGB10861.1| hypothetical protein AURANDRAFT_62396 [Aureococcus anophagefferens] Length = 321 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 95/256 (37%), Gaps = 29/256 (11%) Query: 19 QRQKN-GSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREW----VP 72 Q ++QG + A+ G + GA RTD+GVHA Q AH DL Sbjct: 66 AVQPGRARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPL 125 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQ----------FHARFSAIRRSYLYRIITRQ-A 121 +L +N L D + +L +HA +A + Y YR+ R+ + Sbjct: 126 ELLEHQINRLL--PDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGS 183 Query: 122 PLALEKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRS------IHCQASSPIRTIDH 174 L + + +++D + A VG HDF F + A S R+I Sbjct: 184 ADPLGRLYRGHVAYRAVDFGRLDDALACFVGEHDFAAFANNAPGVDPSGAARSTTRSIRS 243 Query: 175 FDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP- 232 + + G + L+ +R+ VG+ V DG + L R+ P Sbjct: 244 ATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPA 303 Query: 233 -LAPPEGLYFDSVEYS 247 AP GL + V Y Sbjct: 304 KAAPACGLCLEEVYYD 319 >gi|109099290|ref|XP_001113470.1| PREDICTED: tRNA pseudouridine synthase A-like [Macaca mulatta] Length = 483 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 140 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 199 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 200 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDA 254 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 255 RTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQE 312 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I IRV +SF+ QIR VG + + G + LE+ Sbjct: 313 PSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 372 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 373 SW--GTEKVDVPKAPGLGLVLERVHFE 397 >gi|307212020|gb|EFN87913.1| tRNA pseudouridine synthase 3 [Harpegnathos saltator] Length = 368 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 93/245 (37%), Gaps = 43/245 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ + A+ + E H GRTD GV + Sbjct: 19 ILLKLYYLGWNYDGFTVQEDSNATIEHHLFAALTKSCCIESRETSNYHRCGRTDKGVSSF 78 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ + P CK LN L I + + F ARF Sbjct: 79 CQVISLDIRSKLEPEQQSNLSKELPYCKILNKLL--PTNIRCIAWCPISSDFSARFDCKY 136 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASS 167 R Y Y + +LD + M A ++++G DF + ++ Sbjct: 137 RKYKY----------------FFPRGNLDIDAMDKAVKYVIGEFDFRNICKMDVANGVTN 180 Query: 168 PIRTI---------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 R + D ++ ++ E+ + +++FL QIR +G L LVG + + Sbjct: 181 FKRKVIDAKISMNNQAVDKSTGYDICELEITSQAFLWHQIRCLMGILLLVGKKREEPEII 240 Query: 219 EKALQ 223 K L Sbjct: 241 SKLLD 245 >gi|322709808|gb|EFZ01383.1| putative pseudouridine synthase 3 [Metarhizium anisopliae ARSEF 23] Length = 564 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 99/340 (29%), Gaps = 98/340 (28%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVT-----------GEIVVVHGAGR 50 + + Y G Y G++ Q N SI+ + A+ + GR Sbjct: 81 IALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTRACLIFPEDERIVQFDCCEYSKCGR 140 Query: 51 TDSGVHALRQVAHFDLVREWVPVI------------------------------------ 74 TD GV A QV + Sbjct: 141 TDRGVSAFGQVIGLKVRSNRPLPKKRAETDVAAAEDIALADADPQGVKQAEEEVEAQEED 200 Query: 75 -----------LCKALNAYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRIIT---R 119 + LN L D I IL F ARFS R Y Y Sbjct: 201 KPFDDIHDELCYPRILNRLL--PDDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFA 258 Query: 120 QAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHF 175 P +L+ A K+ LD + MR AA+ G HDF F I Q ++ R I Sbjct: 259 PDPTSLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFHRRIFES 318 Query: 176 DVNS--------------------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 D+ + + V +FL QIR V L LVG Sbjct: 319 DIVEVQGAGSVMPYLQTPGFSSPGLEGSGPYPKVYYFHVRGSAFLWHQIRHMVAVLFLVG 378 Query: 210 DGKWTSTDLEKALQ-AQDR-KECGPLAPPEGLYFDSVEYS 247 G + T + + L A++ + +A L + Sbjct: 379 QGLESPTVISELLDTAKNPGRPSYVMADEVPLVLWDCIFP 418 >gi|315928911|gb|EFV08168.1| tRNA pseudouridine synthase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 186 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 6/191 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 ASVECGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHS 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + PK D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 175 Query: 181 GNLIEIRVVAR 191 + A Sbjct: 176 KDFSIFHFKAN 186 >gi|164659606|ref|XP_001730927.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966] gi|159104825|gb|EDP43713.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966] Length = 604 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 56/276 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAIFLV-------TGEIVVVHGAGR 50 + + Y+G Y G Q +++ +I +A+ + + V GR Sbjct: 80 RKIALRFCYDGGSYSGLAAQMGQMTPLPTVEETIWEALCTARLVDATKSMDDVDWSRCGR 139 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKA----------------------LNAYLKISDT 88 TD+GV A QV + V + LN L T Sbjct: 140 TDAGVSAAGQVVALWIRSRCVDERPLRYKTGEAAIPLTDTSDEELPYVATLNRLL--PPT 197 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQ 147 I I S V F ARF + R Y Y + L + LD + MR AA Sbjct: 198 IRIQAWSPVRPTFSARFDCVYRHYKYFFTLGAPSTLVWQPESLSQFSGRLDLDRMRDAAA 257 Query: 148 HLVGRHDFTTFRSIHC--QASSPIRTIDHFDVNS------------------FGNLIEIR 187 LVG HDF + Q ++ R ID ++ + + Sbjct: 258 RLVGEHDFRNMCKVDASKQITNFRRRIDGASIDPVCRGWSDRPIPAPDPHSTDEPMYVLN 317 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + +FL+ Q+R + L +VG + +++ L Sbjct: 318 LRGSAFLYHQVRHIMAVLFMVGARLEDPSIVDELLN 353 >gi|256371245|ref|YP_003109069.1| tRNA pseudouridine synthase [Acidimicrobium ferrooxidans DSM 10331] gi|256007829|gb|ACU53396.1| tRNA pseudouridine synthase [Acidimicrobium ferrooxidans DSM 10331] Length = 294 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 95/249 (38%), Gaps = 9/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +++ Y+G + G Q ++ G++ A+ LV + AGRTD+GVHA Q+ Sbjct: 7 LLLVVGYDGREFAGAAPQPGVRTVVGALRSALELVLQRPTSLAIAGRTDAGVHARAQLVS 66 Query: 64 FDL-VREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRII--- 117 L E + + L L + + + ++ AR A R YLYR+ Sbjct: 67 VPLQPGERARLGDVERLCGRLGRLAGRGLWVRSAGVLPGSVDARRVARWRHYLYRLDLGH 126 Query: 118 -TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 R+ + LE L+ + + A L G D T R + Sbjct: 127 GDRRGRVILEP--TAWACGPLELDVLAGALATLRGDLDATGLCRAGAAGGYRRRVLSTRV 184 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ V+ SF H +R VG+ V G+ + + +R +APP Sbjct: 185 WARARDRVDVSVIGVSFCHEFVRRAVGNAVAVAQGRLDGERWREGVDRGERALLATVAPP 244 Query: 237 EGLYFDSVE 245 GL V Sbjct: 245 WGLSLWRVG 253 >gi|256087148|ref|XP_002579738.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665217|emb|CAZ35977.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 413 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 30/264 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y+G GY+G QR +I+G + KA+F + V A +TD V Sbjct: 41 AILLMYSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSV 100 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL QV L + L LN L + I +L++ V + F + S R Y Y Sbjct: 101 SALGQVCSMQLKEDTD---LLSKLNNSL--PENIRVLDIIRVTRGFSSYSSCTHRIYDYL 155 Query: 116 IIT---RQAPLALEKGRAWLIPKSLDCENM---RIAAQHLVGRHDFTTFRSIH-CQASSP 168 + T A +L W L E + + G H+F F S S Sbjct: 156 LPTFALSPATSSLNDSTCWTYR--LTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSC 213 Query: 169 IRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 R I + IR+ +SF+ QIR +G V G T + + Sbjct: 214 SRYIISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYAT-EAVFDIVF 272 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 ++ R + P AP GL + V++S Sbjct: 273 SKARIDI-PKAPGLGLMLNQVDFS 295 >gi|256087146|ref|XP_002579737.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665216|emb|CAZ35976.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 428 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 30/264 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y+G GY+G QR +I+G + KA+F + V A +TD V Sbjct: 56 AILLMYSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSV 115 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL QV L + L LN L + I +L++ V + F + S R Y Y Sbjct: 116 SALGQVCSMQLKEDTD---LLSKLNNSL--PENIRVLDIIRVTRGFSSYSSCTHRIYDYL 170 Query: 116 IIT---RQAPLALEKGRAWLIPKSLDCENM---RIAAQHLVGRHDFTTFRSIH-CQASSP 168 + T A +L W L E + + G H+F F S S Sbjct: 171 LPTFALSPATSSLNDSTCWTYR--LTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSC 228 Query: 169 IRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 R I + IR+ +SF+ QIR +G V G T + + Sbjct: 229 SRYIISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYAT-EAVFDIVF 287 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 ++ R + P AP GL + V++S Sbjct: 288 SKARIDI-PKAPGLGLMLNQVDFS 310 >gi|321261750|ref|XP_003195594.1| pseudouridylate synthase [Cryptococcus gattii WM276] gi|317462068|gb|ADV23807.1| pseudouridylate synthase, putative [Cryptococcus gattii WM276] Length = 511 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 95/318 (29%), Gaps = 87/318 (27%) Query: 4 YCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV-------TGEIVVVHGAG 49 ++I Y+G Y G Q +++ + A+ E G Sbjct: 75 IALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGRCG 134 Query: 50 RTDSGVHALRQVAHFDL------------------------------------------- 66 RTD GV QV + + Sbjct: 135 RTDRGVSGEGQVINLWVRSSRRRDDGGGELGDGWRDAAEPEVEKPVVVQEDGEAKGQEKK 194 Query: 67 ------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 R+ K LN+ L +I +L S + F +RFS R Y Y TR Sbjct: 195 SKIVQPTRQPSEFPYPKLLNSVL--PPSIRVLAWSPIPSSFDSRFSCTYRHYRYAFHTRP 252 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFDVN 178 P + E LD E M AQ L+G HD+ F + Q + R + Sbjct: 253 TPTSPE----------LDLELMSQGAQLLLGEHDYRNFCKLDGSKQIENHTRGVLKAWFE 302 Query: 179 S------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++ ++ +FL Q+R V L L+G + + L +R P Sbjct: 303 GGESQGVGEGMMVFNLIGTAFLWHQVRHIVAVLFLIGAKLEPPSIVSDLLDV-ERFPSKP 361 Query: 233 ---LAPPEGLYFDSVEYS 247 + P L Y Sbjct: 362 NYTMGHPLPLTLHHCGYP 379 >gi|159479156|ref|XP_001697664.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158274274|gb|EDP00058.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 382 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 50/233 (21%) Query: 10 YNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 Y+GS + G+Q Q ++QG +E+ + + G+ RTD G HA QV HFD+ Sbjct: 29 YDGSEFAGFQFQPGKVRTVQGELERCAKRLFVGCSRMVGSSRTDGGAHAYGQVVHFDVYG 88 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 E + L + + +L LS ++ F + FSA ++Y+Y+ P ++ Sbjct: 89 ERDNLE-SDTLYYNSFLPPDVRVLELSYAEEGFDSHFSACGKTYIYKFAAG-LPDPMQAK 146 Query: 129 RAWLIPK----------------SLDCENMRIAAQHLVGRHDFTTFRSIH---------- 162 W + LD M A Q L+GRHDF+ F Sbjct: 147 YRWWVYDRWCERSRGKPSKLSDIRLDVGAMCEAGQLLLGRHDFSAFMDAKRPAGLGSAKR 206 Query: 163 --------------CQASSPIRTIDHFDVNS------FGNLIEIRVVARSFLH 195 A + R + H + G + + V FL+ Sbjct: 207 KNPKLAERGIKPERTSAKNT-RILSHLSITEGVSALSGGQEVTMEVTGNGFLY 258 >gi|322698560|gb|EFY90329.1| putative pseudouridine synthase 3 [Metarhizium acridum CQMa 102] Length = 564 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 101/340 (29%), Gaps = 98/340 (28%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAI---FLVTGEI--------VVVHGAGR 50 + + Y G Y G++ Q N SI+ + A+ L+ E GR Sbjct: 81 IALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTRACLIFPEDERIVQFNCCEYSKCGR 140 Query: 51 TDSGVHALRQVAHFDLVREWVPVI------------------------------------ 74 TD GV A QV + Sbjct: 141 TDRGVSAFGQVIGLKVRSNRPLPKNGSKTDVAAAEDIAMAEAGPQGGKQAEEDVEVQEEE 200 Query: 75 -----------LCKALNAYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRIIT---R 119 + LN L D I IL F ARFS R Y Y Sbjct: 201 KPFDDIHDELCYPRILNRLL--PDDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFA 258 Query: 120 QAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHF 175 P +L+ A K+ LD + MR AA+ G HDF F I Q ++ R I Sbjct: 259 PDPASLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFRRRIFES 318 Query: 176 DVNSFGN--------------------------LIEIRVVARSFLHTQIRSFVGSLKLVG 209 D+ + + V +FL QIR V L LVG Sbjct: 319 DIVEVQDASSVMPYLQTSGFSPPGLQGSGPYPKVYYFHVRGSAFLWHQIRHMVAILFLVG 378 Query: 210 DGKWTSTDLEKALQ-AQDR-KECGPLAPPEGLYFDSVEYS 247 G + T + + L A++ + +A L + Sbjct: 379 QGLESPTVVSELLDTAKNPGRPSYVMADEVPLVLWDCIFP 418 >gi|71985046|ref|NP_496062.3| Temporarily Assigned Gene name family member (tag-124) [Caenorhabditis elegans] gi|1353139|sp|Q09524|TG124_CAEEL RecName: Full=Probable tRNA pseudouridine synthase tag-124; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|3875428|emb|CAA87378.1| C. elegans protein E02H1.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 402 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 97/290 (33%), Gaps = 63/290 (21%) Query: 2 IRYCMIIE--YNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSG 54 R + I+ Y G + G +Q + ++++ I +A+ GRTD G Sbjct: 28 PRRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHLIEDWTKCDFSRCGRTDKG 87 Query: 55 VHALRQVAHFDLVREWV------------------------PVILCKALNAYLKISDTIS 90 V A +Q A + + K LN L TI Sbjct: 88 VSAFKQTAAMVVRSLCPGDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVL--PKTIR 145 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 + + V + F+ARF RR+Y Y L+ E MR A+ LV Sbjct: 146 VFAWAPVAQTFNARFDCNRRTYKYSFA----------------KADLNLEKMRQGAELLV 189 Query: 151 GRHDFTTFRSIHCQAS----SPIRTIDHFDVNS--------FGNLIEIRVVARSFLHTQI 198 G HDF+ F I S +R + V +++E+ V FL I Sbjct: 190 GEHDFSNFCQIDMNEKRLLQSYVRKVYEVKVEQVSTHPENDMYSMVELTVSGSGFLWHMI 249 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 R V L+ +G + + + L + + LA L Y Sbjct: 250 RYIVTILQEIGRENEQPSLISQLLDLKKYPSRPQYTLASDTPLCLFDCGY 299 >gi|297693488|ref|XP_002824050.1| PREDICTED: tRNA pseudouridine synthase A-like [Pongo abelii] Length = 424 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 81 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 140 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 141 RTDKGVSAAGQVVSL---KVWLIDNILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDA 195 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 196 RTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQE 253 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I IRV +SF+ QIR VG + + G LE+ Sbjct: 254 PSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPECVLER 313 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 314 SW--GTEKVDVPKAPGLGLVLERVHFE 338 >gi|290987319|ref|XP_002676370.1| predicted protein [Naegleria gruberi] gi|284089972|gb|EFC43626.1| predicted protein [Naegleria gruberi] Length = 477 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 99/287 (34%), Gaps = 54/287 (18%) Query: 2 IRYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVTG---------EIVVVHGA 48 R + I Y G+ Y G Q N +++ ++ KA+ G V H + Sbjct: 116 RRVAIFIGYLGTNYNGSQTSNFTNPNVKTVEETVFKALCQAGGVSGDNSTDMNKVHFHRS 175 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GVHA V L+ + + L + + I V K F+A+ Sbjct: 176 SRTDKGVHAASNVLEMKLLMKPGLEEEMRKL-----LPEDIVFYGYKKVSKSFNAKEHCT 230 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLD------------------------CENMRI 144 R+Y Y + A K W ++D E Sbjct: 231 ARTYEYLLP-AFALSPDPKAATWFGQINIDKITKEDVESENLNDIYNYDPTDEQIEKANR 289 Query: 145 AAQHLVGR---HDFTTFRSIHCQASSPIRTIDHFDVNSFGNL-----IEIRVVARSFLHT 196 ++ VG H++T S R I F+ + + +++ V SF++ Sbjct: 290 VLKNFVGTNSFHNYTQLTKAKPN--SFNRHITKFECSKAFEIDGMKVVKLTVTGSSFIYN 347 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 QIR VG + V G +D ++ ++ PLAP GL Sbjct: 348 QIRKMVGFMIAVMRGSLNESDFSTSVD-KEVTANVPLAPANGLLLCE 393 >gi|330793042|ref|XP_003284595.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum] gi|325085509|gb|EGC38915.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum] Length = 473 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 100/270 (37%), Gaps = 31/270 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 + +++ Y G Y G Q+ +I+ +E AIF G + RTD Sbjct: 69 KVAVLLGYLGKNYAGMQKNPGLRTIEEELEMAIFKAGGILPDNLYFQHKIDWVRCARTDK 128 Query: 54 GVHALRQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV ALR V + + KALN L + I + + V+ FHA+ RSY Sbjct: 129 GVSALRNVVSLKMEVGPPELDEMVKALNKLL--PEDIHVFKIMRVNNSFHAKNGVDARSY 186 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDC--ENMRIAAQHLVGRHDFTTFRSIH-CQASSPI 169 +Y T + K + E + + +G H F + S S Sbjct: 187 VYVCPTSAFEPKFATNKLVEPFKFTEETRETLNRVLSYYLGNHRFHNYTSRKESNDVSVF 246 Query: 170 RTIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLV--------GDGKWTS- 215 R I F+ + ++ I V+ SF+ QIR +G L K ++ Sbjct: 247 RKIIKFECSVPFILEGVEMVSINVIGESFMLHQIRKMIGCLMSFMRKGIFQDAQDKESAF 306 Query: 216 TDLEKALQAQDRKE--CGPLAPPEGLYFDS 243 + K ++A + P+AP GL D Sbjct: 307 DQIRKYIEATFYHQPLNLPVAPGAGLLLDH 336 >gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis] Length = 471 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 100/303 (33%), Gaps = 61/303 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHAL 58 +++ Y G G+ Q N ++++ I KA+ + + E GRTD V A Sbjct: 39 IALMVAYLGWDLDGFCAQNNSQNTVESKIFKALIETKLIQSLETANYSRCGRTDKTVSAF 98 Query: 59 RQV------------AHFDLVREWVPVI----------------LCKALNAYLKISDTIS 90 QV + P K LN+ L I Sbjct: 99 SQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDYAKILNSVL--PQEIR 156 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQ------------APLALEKGRAWLIPKSLD 138 +L + V++ F+AR++ R Y Y A+ + ++ Sbjct: 157 VLAWAPVERTFNARYNCTSRQYKYFFPKGALNLKVSTVVDFLHFSAIVALFSNFRRGTIC 216 Query: 139 C--ENMRIAAQHLVGRHDFTTFRS---IHCQASSPIRTIDHFDVNSFG-------NLIEI 186 + M A++ L+G HDF F + S +RT+ L Sbjct: 217 VYFQLMEQASKRLIGEHDFRNFCKIDMSKNEIQSCVRTVFDVQFTKVNAGGLNSRTLCCF 276 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSV 244 +VA +FL QIR + L +G+GK +E L + K + L Sbjct: 277 TIVANAFLWHQIRCIMSVLFAIGEGKEQPDVIEWLLNTELCPAKPQYSMVVGWPLVLYGC 336 Query: 245 EYS 247 +Y Sbjct: 337 QYD 339 >gi|74149634|dbj|BAE36440.1| unnamed protein product [Mus musculus] Length = 393 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S + Sbjct: 165 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPRE 222 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 223 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 282 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 283 SW--GEEKVDVPKAPGLGLVLERVHFE 307 >gi|268529206|ref|XP_002629729.1| C. briggsae CBR-TAG-124 protein [Caenorhabditis briggsae] gi|187038647|emb|CAP22290.1| CBR-TAG-124 protein [Caenorhabditis briggsae AF16] Length = 401 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 93/290 (32%), Gaps = 63/290 (21%) Query: 2 IRYCMIIE--YNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGE----IVVVHGAGRTDSG 54 R + I+ Y G + G +Q N ++++ + +A+ GRTD G Sbjct: 28 PRRKIAIQFFYLGWEHDGLVQQPNTQNTVEHHLMEALIKTHIIEDSIKCDFSRCGRTDKG 87 Query: 55 VHALRQVAHFDLVREWVPVI------------------------LCKALNAYLKISDTIS 90 V A +Q A F K LN L TI Sbjct: 88 VSAFKQTAAFLARSTCPDHPNVFWSDSTAEDVKNSYKSKDEELPYIKMLNGVL--PKTIR 145 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 + + V F+ARF RR+Y Y LD E MR AA+ L+ Sbjct: 146 VFAWAPVAPTFNARFDCNRRTYKYSFP----------------KAGLDLEKMREAAKLLI 189 Query: 151 GRHDFTTFRSIHCQA----SSPIRTIDHFDVNS--------FGNLIEIRVVARSFLHTQI 198 G HD++ F I S R I V +++E+ V FL I Sbjct: 190 GEHDYSNFCQIDMNKMRLEQSYTRKIYDVTVEQVSTHSENDIYSMVELTVSGSGFLWHMI 249 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQ-AQDRKECGPLAPPE-GLYFDSVEY 246 R V L+ V G + + L ++ + L Y Sbjct: 250 RYIVTVLQEVARGNEQPSLVSDLLDLSKYPSRPHYTLSSDTPLCLFDCGY 299 >gi|149063709|gb|EDM14032.1| pseudouridine synthase 1, isoform CRA_c [Rattus norvegicus] Length = 402 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 59 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 118 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 119 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 173 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL---VGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ + L G H+F F S + Sbjct: 174 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPRE 231 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 232 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 291 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 292 SW--GEEKVDVPKAPGLGLVLERVHFE 316 >gi|148688059|gb|EDL20006.1| pseudouridine synthase 1, isoform CRA_d [Mus musculus] Length = 402 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 59 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 118 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 119 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 173 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S + Sbjct: 174 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPRE 231 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 232 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 291 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 292 SW--GEEKVDVPKAPGLGLVLERVHFE 316 >gi|10086461|gb|AAG12521.1|AC015446_2 Putative pseudouridine synthase [Arabidopsis thaliana] Length = 442 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 95/304 (31%), Gaps = 77/304 (25%) Query: 3 RY-CMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGV 55 RY + I Y G ++G+ + SI+ + KA+ + GRTD GV Sbjct: 90 RYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGV 149 Query: 56 HALRQVAHFDL-------------------------------------------VREWVP 72 + Q + L E Sbjct: 150 SSTGQFKNQFLIVLMFFQNPVMGAFPNVYKVIALFLRSRLKSPPGDSKAQVNGRTGERPE 209 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 + LN L D I ++ S FHARFS R Y Y Sbjct: 210 YDYVRVLNRAL--PDDIRVIGWSPAPIDFHARFSCYAREYKYFFW--------------- 252 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVN------SFGNLIE 185 ++L+ M A + +G HDF F + R + F+V+ L Sbjct: 253 -RQNLNLSAMDFAGKKFIGEHDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCT 311 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDS 243 + +FL QIR V L ++G G + ++ L + RK LA L + Sbjct: 312 FTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRT 371 Query: 244 VEYS 247 E+ Sbjct: 372 CEFE 375 >gi|327283197|ref|XP_003226328.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Anolis carolinensis] Length = 406 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 101/270 (37%), Gaps = 36/270 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------------IVVVHGA 48 + +++ Y+G GY G QR G+S +IE + L + + Sbjct: 61 RKIVLLVAYSGKGYHGMQRNV-GNSQFKTIEDDLVLALIQSGCIPENHGEDMKKMSFQRC 119 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A Q+ + W+ + + +N +L I IL L V F+++ Sbjct: 120 ARTDKGVSAAGQIVSL---KVWLIEDILQKINNHL--PPHIRILGLKRVTGGFNSKNKCD 174 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPK--SLDCENM---RIAAQHLVGRHDFTTFRS-IH 162 R+Y Y + T A L+ E + G H+F F S Sbjct: 175 ARTYSYMLPT----FAFAHKDCDFQDHTFHLNTETLATVNRLLAGYKGTHNFHNFTSQKG 230 Query: 163 CQASSPIRTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + S R I V ++V +SF+ QIR +G + + G + + Sbjct: 231 PKDPSAKRYIMEMYCEEPFVRQGMEFAVMKVKGQSFMMHQIRKMIGLVIAIVKGYASESI 290 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +E++ + K P AP GL + V + Sbjct: 291 MEQSW--GEEKVDVPKAPGLGLVLERVHFE 318 >gi|30692743|ref|NP_198390.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|27311599|gb|AAO00765.1| putative protein [Arabidopsis thaliana] gi|30725698|gb|AAP37871.1| At5g35400 [Arabidopsis thaliana] gi|332006580|gb|AED93963.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 420 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 108/319 (33%), Gaps = 76/319 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-------------VVHGA 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ E V A Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL QV F R + P+ + A+N S + ++++S V + FH FSA Sbjct: 153 GRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINK--DASGKLRVVSISKVSRSFHPNFSA 210 Query: 108 IRRSYLYRIITRQAPLALEKG--------------------------------------- 128 R YLY A + G Sbjct: 211 KWRRYLYIFPLDDAEPLRKSGENHENFIFDENKKKQRNGLLSEEIAEEVIMSEDDELEIE 270 Query: 129 ------RAWLIPKSLDCENMRIAAQHLVGR--------HDFTTFRSIHCQASSPIRTIDH 174 P + QHL G+ D R+ + Sbjct: 271 ETSNALEVVEKPSDFSVSKVDQLLQHLQGKVLSYKMFARDTKAARNEGPPTECFMYHARA 330 Query: 175 FDVN-------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 ++ ++ + +VA FL +R V + L K L+A R Sbjct: 331 AEIRLSSSDCVEGRRVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLLEASCR 390 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P AP EGL V Y Sbjct: 391 RATAPPAPSEGLCLFDVGY 409 >gi|301605366|ref|XP_002932295.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana) tropicalis] Length = 394 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 33/269 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAI---------FLVTGEIVVVHGAG 49 ++ +++ Y G GY+G Q N +I+ ++ A+ F + + + Sbjct: 69 RKFAIMLAYCGRGYYGMQMDLTRPNFPTIESALISALIQARCIPEMFYMQMKQLKFQRCA 128 Query: 50 RTDSGVHALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV AL Q+ L P + +N++L I I+++ V K F + Sbjct: 129 RTDKGVSALSQLVSVRLLPSCSNP---VEKINSHL--PPEILIIDMKRVTKGFCPKKMCD 183 Query: 109 RRSYLYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC- 163 +RSY Y + T AP + +P+ D N+ G H+F F S Sbjct: 184 KRSYSYMVPTFALSCCAPSVPDSNF--RMPRE-DFHNINNLLSFYKGTHNFHNFTSRKAF 240 Query: 164 QASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + S R + + +I + +SF+ QIR VG + + G + L Sbjct: 241 EDPSSFRHMLDVSCSEPFVFHGTEFAQIHITGQSFMLYQIRKMVGLIIAIAQGIVPADFL 300 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + +Q + K P AP GL + V + Sbjct: 301 PQCMQRE--KINIPPAPGLGLVLERVHFD 327 >gi|149063707|gb|EDM14030.1| pseudouridine synthase 1, isoform CRA_a [Rattus norvegicus] Length = 393 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL---VGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ + L G H+F F S + Sbjct: 165 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPRE 222 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 223 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 282 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 283 SW--GEEKVDVPKAPGLGLVLERVHFE 307 >gi|70906472|ref|NP_001020733.1| tRNA pseudouridine synthase A, mitochondrial isoform 3 [Mus musculus] gi|4455033|gb|AAD21041.1| pseudouridine synthase 1 [Mus musculus] gi|11464734|gb|AAG35308.1| pseudouridine synthase 1 [Mus musculus] gi|148688058|gb|EDL20005.1| pseudouridine synthase 1, isoform CRA_c [Mus musculus] Length = 393 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S + Sbjct: 165 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPRE 222 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 223 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 282 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 283 SW--GEEKVDVPKAPGLGLVLERVHFE 307 >gi|26354378|dbj|BAC40817.1| unnamed protein product [Mus musculus] Length = 393 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S + Sbjct: 165 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPRE 222 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 223 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 282 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 283 SW--GEEKVDVPKAPGLGLVLERVHFE 307 >gi|40882706|gb|AAR96247.1| putative pseudouridine synthase [Oryza sativa Japonica Group] gi|108708473|gb|ABF96268.1| tRNA pseudouridine synthase A family protein [Oryza sativa Japonica Group] Length = 411 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 86/246 (34%), Gaps = 47/246 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y G ++G+ + + +++ I KA+ + + GRTD GV A Sbjct: 94 IALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSA 153 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV L L N F ARFS + R Y Y Sbjct: 154 TGQVISLFLRSNIKDAKLDVLDNK----------------SGDFLARFSCLGREYKYLFW 197 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFD 176 L+ M+ AA +G HD+ F + S+ R I F+ Sbjct: 198 ----------------KGDLNISEMQKAALKFIGEHDYRNFCKMDAANVSNYRRHITDFN 241 Query: 177 VNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRK 228 ++++ L I + +FL Q+R V L L+G G T ++ L RK Sbjct: 242 ISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLETPCIVDSLLDITKTPRK 301 Query: 229 ECGPLA 234 +A Sbjct: 302 PQYKMA 307 >gi|125544113|gb|EAY90252.1| hypothetical protein OsI_11824 [Oryza sativa Indica Group] Length = 403 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 86/246 (34%), Gaps = 47/246 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y G ++G+ + + +++ I KA+ + + GRTD GV A Sbjct: 94 IALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSA 153 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV L L N F ARFS + R Y Y Sbjct: 154 TGQVISLFLRSNIKDAKLDVLDNK----------------SGDFLARFSCLGREYKYLFW 197 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFD 176 L+ M+ AA +G HD+ F + S+ R I F+ Sbjct: 198 ----------------KGDLNISEMQKAALKFIGEHDYRNFCKMDAANVSNYRRHITDFN 241 Query: 177 VNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRK 228 ++++ L I + +FL Q+R V L L+G G + ++ L RK Sbjct: 242 ISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLESPCIVDSLLDITKTPRK 301 Query: 229 ECGPLA 234 +A Sbjct: 302 PQYKMA 307 >gi|156538138|ref|XP_001608257.1| PREDICTED: similar to pseudouridylate synthase [Nasonia vitripennis] Length = 437 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 101/285 (35%), Gaps = 48/285 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 Y M++ Y G Y+G QR ++I+ + KA+ T + + A RTD Sbjct: 73 NYAMMLGYCGKNYYGMQRNPGFNTIEEELIKAMLKADLITSEAFETIQNINFQRAARTDK 132 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+RQV L + + + L + I + + V K F+++ R+Y Sbjct: 133 GVSAVRQVVSLKLPEDPSKDSINETL------PEDIRVFAIKRVTKGFNSKSQCDARTYS 186 Query: 114 YRIIT--------------RQAPLALEK--------GRAWLIPKSLDC--ENMRIAAQHL 149 Y + T + ++ G+ + + E + + L Sbjct: 187 YTMPTFALAPENLELFQEMSEYNDVEKRMEQLSTIDGKPFHEYRLPQERKEKLTELLKVL 246 Query: 150 VGRHDFTTF-RSIHCQASSPIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVG 203 G H+F F + R I F I ++V +SF+ QIR V Sbjct: 247 EGTHNFHNFTSKVLPLDPRAKRYIMSFIAEEPFLVNNMEFITLKVKGQSFMLHQIRKMVA 306 Query: 204 SLKLVGDGKWTSTDLEK-ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + V + EK + K +AP GL + V Y Sbjct: 307 MVIGVIRNIVPREEFEKTVFEQA--KYDITIAPSLGLMLNIVHYD 349 >gi|320165424|gb|EFW42323.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 387 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 29/268 (10%) Query: 3 RYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 R+ + +EY+G+ + G + S+ +++AI T + V + RTD+GVHAL Sbjct: 79 RFLLAVEYDGTAFSGVAASPDEPPDRPSVGSVLDRAIAQATRQDARVTFSSRTDAGVHAL 138 Query: 59 RQVAHF-----------DLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARF 105 H ++W P+ L A+N + + + +S+ + V +Q HARF Sbjct: 139 WNTCHVDIEPRTRRGDLMTQQQWTPLALGSAINYFSRGKVPYPMSVRAVCAVPEQVHARF 198 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 +A +R Y+YR++ ++ A + + + E++ A + F + Sbjct: 199 NATQRVYIYRVVVGESSAASVFDLRYHLTAAPIDESLVQARTT---TRHISQFSVQIDKH 255 Query: 166 SSPIRTIDHF-DVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + D S + + + FL+ Q+R VG + V GK T DL Sbjct: 256 KTDNPWANSLPDALSKPTVALTFTIRGSGFLYHQVRIMVGHVLSVASGKSTLADLVHL-- 313 Query: 224 AQDRKECGP----LAPPEGLYFDSVEYS 247 +D + + P GL V Y Sbjct: 314 -RDNPQVIHLHKDMLPAHGLCLKEVCYD 340 >gi|195171697|ref|XP_002026640.1| GL11833 [Drosophila persimilis] gi|194111566|gb|EDW33609.1| GL11833 [Drosophila persimilis] Length = 421 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 93/264 (35%), Gaps = 46/264 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ + +A+ H GRTD V A Sbjct: 104 VLLKLTYFGWDYQGFACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 163 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + ARF Sbjct: 164 CQVISIDLRSKHTPDTQLEPASLSSEIDYCGLLNRVL--PKNIQCVAWMPLRSPVYSARF 221 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 RSY Y + LD E MR A + LVG DF F +H Sbjct: 222 DCTSRSYRY----------------YFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHN 265 Query: 164 QASSPIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + IR + V NS ++ + + A +FL QIR + L LVG + Sbjct: 266 GVTKFIRNLQAARVEPCVEMLNNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQRRELP 325 Query: 216 TDLEKALQAQDRKECGPLAPPEGL 239 + L + P GL Sbjct: 326 RIVSDLLDVETNPCKPQYTPALGL 349 >gi|328780691|ref|XP_624092.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis mellifera] Length = 389 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 57/283 (20%), Positives = 96/283 (33%), Gaps = 48/283 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSG 54 + M++ Y G Y G Q + +I+GS+ A+ + + A RTD G Sbjct: 49 FVMVLGYLGKNYSGMQINRGIKTIEGSLLSALLKADFITKNEFEDLKEIKFQRAARTDKG 108 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+RQ+ L + K L I + ++ V + F+++ R+Y Y Sbjct: 109 VSAVRQIVSLQLPNHVNKEDINKHL------PKDIKVFDIKRVTRNFNSKNKCDARTYRY 162 Query: 115 RIIT----RQAPLALE---------------------KGRAWLIPKSLDCENMRIAAQHL 149 + T + P L+ K S + + + Sbjct: 163 VLPTFALASEDPSFLQMDKEEEIDEEKRLEKLSMIDGKPYNEFRLNSDMLDKLNEILKLF 222 Query: 150 VGRHDFTTF-RSIHCQASSPIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVG 203 G H+F F I R I +F + + V +SF+ QIR V Sbjct: 223 EGTHNFHNFTSKIRPMDPRAKRYIVYFRCIETFIANNMEFVVLEVQGQSFMLHQIRKMVS 282 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + T ++ A + P+AP GL V Y Sbjct: 283 LIIGICRNIITIDFVKDAFSLEKVD--IPIAPGLGLSLHFVHY 323 >gi|222625021|gb|EEE59153.1| hypothetical protein OsJ_11064 [Oryza sativa Japonica Group] Length = 403 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 86/246 (34%), Gaps = 47/246 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y G ++G+ + + +++ I KA+ + + GRTD GV A Sbjct: 94 IALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSA 153 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV L L N F ARFS + R Y Y Sbjct: 154 TGQVISLFLRSNIKDAKLDVLDNK----------------SGDFLARFSCLGREYKYLFW 197 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFD 176 L+ M+ AA +G HD+ F + S+ R I F+ Sbjct: 198 ----------------KGDLNISEMQKAALKFIGEHDYRNFCKMDAANVSNYRRHITDFN 241 Query: 177 VNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRK 228 ++++ L I + +FL Q+R V L L+G G T ++ L RK Sbjct: 242 ISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLETPCIVDSLLDITKTPRK 301 Query: 229 ECGPLA 234 +A Sbjct: 302 PQYKMA 307 >gi|125811944|ref|XP_001362058.1| GA15853 [Drosophila pseudoobscura pseudoobscura] gi|54637235|gb|EAL26638.1| GA15853 [Drosophila pseudoobscura pseudoobscura] Length = 497 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 93/264 (35%), Gaps = 46/264 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ + +A+ H GRTD V A Sbjct: 104 VLLKLTYFGWDYQGFACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 163 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + ARF Sbjct: 164 CQVISIDLRSKHTPDTQLEPASLSSEIDYCGLLNRVL--PKNIQCVAWMPLRSPVYSARF 221 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 RSY Y + LD E MR A + LVG DF F +H Sbjct: 222 DCTSRSYRY----------------YFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHN 265 Query: 164 QASSPIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + IR + V NS ++ + + A +FL QIR + L LVG + Sbjct: 266 GVTKFIRNLQAARVEPCVEMLNNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQRRELP 325 Query: 216 TDLEKALQAQDRKECGPLAPPEGL 239 + L + P GL Sbjct: 326 RIVSDLLDVETNPCKPQYTPALGL 349 >gi|70906470|ref|NP_062674.2| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Mus musculus] gi|114152896|sp|Q9WU56|TRUA_MOUSE RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|112180429|gb|AAH34359.2| Pseudouridine synthase 1 [Mus musculus] gi|148688056|gb|EDL20003.1| pseudouridine synthase 1, isoform CRA_a [Mus musculus] Length = 423 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S + Sbjct: 195 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPRE 252 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 253 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 312 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 313 SW--GEEKVDVPKAPGLGLVLERVHFE 337 >gi|50756277|ref|XP_415090.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 409 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + + Sbjct: 64 RKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRCA 123 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A Q+ + + + + +N +L I IL L V F+++ Sbjct: 124 RTDKGVSAAGQIVSL---KVRLIDDILEKINNHL--PSHIRILGLKRVTGGFNSKNKCDA 178 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E + G H+F F S + Sbjct: 179 RTYAYMLPT--FAFAHKDHDVQEEAHRLSRETLEKVNSLLARYKGTHNFHNFTSQKGPKD 236 Query: 166 SSPIRTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I V I+V +SF+ QIR +G + + G + +E+ Sbjct: 237 PSARRYIMEMYCGEPFVREGIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPESIIER 296 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 297 SW--GEEKVDVPKAPGLGLVLERVHFE 321 >gi|195552156|ref|XP_002076382.1| GD15210 [Drosophila simulans] gi|194202031|gb|EDX15607.1| GD15210 [Drosophila simulans] Length = 498 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 93/264 (35%), Gaps = 46/264 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 101 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 160 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + ARF Sbjct: 161 CQVISIDLRSKHPPESQLDPTSLSSEIDYCGLLNRVL--PKNIQCVAWMPLRSPVYSARF 218 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 + RSY Y + LD MR A LV DF F +H Sbjct: 219 DCVSRSYRY----------------YFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHN 262 Query: 164 QASSPIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++ +R + V NS ++ + + A +FL QIR + L LVG K Sbjct: 263 GVTNYMRNLQSARVEACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKEKP 322 Query: 216 TDLEKALQAQDRKECGPLAPPEGL 239 + L + P GL Sbjct: 323 AVISDLLDVESNPCKPQYTPAIGL 346 >gi|171741245|ref|ZP_02917052.1| hypothetical protein BIFDEN_00320 [Bifidobacterium dentium ATCC 27678] gi|171276859|gb|EDT44520.1| hypothetical protein BIFDEN_00320 [Bifidobacterium dentium ATCC 27678] Length = 219 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 28/201 (13%) Query: 71 VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGR 129 V L + L L + I+I ++ + F ARFSA+ R+Y+YRI R + +G Sbjct: 5 PVVALTRRLQRML--PNDITIHGINEAPQGFDARFSALERTYVYRIADRSSEIDPRMRGF 62 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN------- 182 + LD E M AA +G HDF +F + + + IR + Sbjct: 63 VLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNP-GGTTIREVKTAYWRRIPQRPLVDGE 121 Query: 183 ---------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 L +VA +F +RS V VG GK + + R Sbjct: 122 MTMGERYRTPSMESGLACFTIVADAFARNMVRSLVNGCVQVGIGKRSLDWFADKMATPLR 181 Query: 228 K-ECGPLAPPEGLYFDSVEYS 247 + GP+AP +GL + +EY Sbjct: 182 EGSTGPIAP-QGLTLEHIEYP 201 >gi|70906466|ref|NP_001020734.1| tRNA pseudouridine synthase A, mitochondrial [Rattus norvegicus] gi|182676393|sp|Q4KM92|TRUA_RAT RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|149063708|gb|EDM14031.1| pseudouridine synthase 1, isoform CRA_b [Rattus norvegicus] gi|171847186|gb|AAI61821.1| Pseudouridylate synthase 1 [Rattus norvegicus] Length = 423 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL---VGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ + L G H+F F S + Sbjct: 195 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPRE 252 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 253 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 312 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 313 SW--GEEKVDVPKAPGLGLVLERVHFE 337 >gi|76638649|ref|XP_593895.2| PREDICTED: pseudouridylate synthase 1 isoform 1 [Bos taurus] gi|297484682|ref|XP_002694500.1| PREDICTED: pseudouridylate synthase 1 [Bos taurus] gi|296478661|gb|DAA20776.1| pseudouridylate synthase 1 [Bos taurus] Length = 433 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 90 RKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 149 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 150 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 204 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENM---RIAAQHLVGRHDFTTFRS-IHCQA 165 R+Y+Y + T A + + L E + G H+F F S Sbjct: 205 RTYVYMLPT--FAFAHKDHDSQDETYRLSAETLGRVNRLLACYKGTHNFHNFTSQKGPHE 262 Query: 166 SSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I + V I+V +SF+ QIR VG + + G + LE+ Sbjct: 263 PSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLER 322 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 323 CW--GEAKVDVPKAPGLGLVLERVHFE 347 >gi|149634330|ref|XP_001510884.1| PREDICTED: similar to Pseudouridine synthase 1 [Ornithorhynchus anatinus] Length = 469 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 32/268 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY+G QR +I+ + A+ + + Sbjct: 100 RKIVLLMAYSGKGYYGMQRHVGSSQFKTIEDDLVSALVQSGCIPENHGDDMKKMSFQRCA 159 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A Q+ + W+ + + +N++L I IL L V F+++ + Sbjct: 160 RTDKGVSAAGQIVSL---KVWLIDNILEKINSHL--PSQIRILGLKRVTGGFNSKNNCTA 214 Query: 110 RSYLYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQ 164 R+Y Y + T + ++ L P+ L E + G H F F S + Sbjct: 215 RTYFYMLPTLAFAHKDHDPQDETYR-LSPEVL--ERVNRLLACYKGTHHFHNFTSQKGPK 271 Query: 165 ASSPIRTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 +S +R I V I+V +SF+ QIR +G + + G + +E Sbjct: 272 DASGMRYIMEMYCEEPFVREGMEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYADQSVME 331 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ + K P AP GL + V + Sbjct: 332 RSW--GEEKVDIPKAPGLGLVLERVHFE 357 >gi|112180395|gb|AAH21446.2| Pseudouridine synthase 1 [Mus musculus] Length = 423 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S + Sbjct: 195 RTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPRE 252 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I I+V +SF+ QIR VG + + G + LE+ Sbjct: 253 PSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLER 312 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 313 SW--GEEKVDVPKAPGLGLVLERVHFE 337 >gi|291415803|ref|XP_002724139.1| PREDICTED: pseudouridylate synthase 1-like, partial [Oryctolagus cuniculus] Length = 391 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 102/268 (38%), Gaps = 32/268 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 57 RKIVLLLAYSGKGYHGMQRNVGSSQFRTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 116 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 117 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 171 Query: 110 RSYLYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQ 164 R+Y Y + T + ++ L ++L + + G H F F S + Sbjct: 172 RTYFYMLPTFAFAHKDRDPQDETYR-LSAETL--QRVNRLLACYQGTHSFHNFTSQKGPR 228 Query: 165 ASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 S R I + V IRV +SF+ QIR VG + + G + LE Sbjct: 229 EPSARRYILQMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 288 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ D K P AP GL + V + Sbjct: 289 RSW--GDEKVDVPKAPGLGLVLERVHFE 314 >gi|332520423|ref|ZP_08396885.1| Pseudouridine synthase I, TruA, alpha/beta domain [Lacinutrix algicola 5H-3-7-4] gi|332043776|gb|EGI79971.1| Pseudouridine synthase I, TruA, alpha/beta domain [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 12/222 (5%) Query: 36 FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNL 94 F++ G+ +GRTD+ V A L K N L I L + Sbjct: 8 FILEGKRFKSLASGRTDAMVSAEETAIELFLYEPIEDQKAFLKLFNTNL--PQDIRALEI 65 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 + VD +F+ + + Y+Y I LD E M+I A+ G H Sbjct: 66 TEVDAKFNIINNPKVKEYIYLFAFGDKFHPFCAPILTTILDDLDVEIMKIGAKLFEGEHY 125 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSF---------GNLIEIRVVARSFLHTQIRSFVGSL 205 T+ R I ++ +RV + F+ QIR +G+L Sbjct: 126 LKTYCYKPSNNGIYTREILTCEIVENTIYTANFFPKKSYLLRVRGKGFMRNQIRLMMGTL 185 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +G GK T D++ +L+ + + +AP GL S+++ Sbjct: 186 IDLGKGKLTLEDIKASLEPDNTIKMEYIAPASGLILKSLKFD 227 >gi|198429149|ref|XP_002129315.1| PREDICTED: similar to Pseudouridylate synthase 3 [Ciona intestinalis] Length = 510 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 99/311 (31%), Gaps = 82/311 (26%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG------SSIQGSIEKAIFLVT---------GEIVVVH 46 R + + Y G Y G+ K+ SI +E+ + G ++ Sbjct: 101 RRIALKVLYLGWDYVGYAFTKSSLAFSKPESISNVVERVLLEALLRQQLITGVGSVLNFD 160 Query: 47 GAGRTDSGVHALRQVAHFDL--------------------------------------VR 68 AGRTD V L QV ++ Sbjct: 161 RAGRTDRQVSGLSQVVSVNVRSNLNKGHGVWYPKVEGSDNVGNTKPETEYFEDGFPVSDT 220 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 L + I IL S V K F R+ R+Y Y Sbjct: 221 TLDDGELPYVSLLNQALPPDIRILAWSPVKKTFSPRYQCRSRTYRY-------------- 266 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--SSPIRTIDHFDVNSFG----- 181 + S+D E M AAQ VGRHD F + + + +RTI+ V F Sbjct: 267 --AFVRGSMDIELMNEAAQKFVGRHDMRNFCKVSSENAYRTYVRTINSIKVEEFNQTNLP 324 Query: 182 --NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP---P 236 ++ + A S+++ QIR + L +G G+ + +++ L ++ P P Sbjct: 325 ECDICVATISAESYVYKQIRRMMSILGRIGSGEIPPSTIDEMLDV-EKNPKKPSFKSWTP 383 Query: 237 EGLYFDSVEYS 247 L E+ Sbjct: 384 LNLTLIDAEFD 394 >gi|224071794|ref|XP_002194956.1| PREDICTED: similar to pseudouridylate synthase 1 [Taeniopygia guttata] Length = 474 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 98/267 (36%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + + Sbjct: 128 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRCA 187 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A Q+ + + + + +N +L I IL L V F+++ Sbjct: 188 RTDKGVSAAGQIVSL---KVRLIDDILEKINNHL--PSHIRILGLKRVTGGFNSKNKCDA 242 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + LD E + G H+F F S + Sbjct: 243 RTYSYMLPT--FAFAHKDHDVQEELFRLDRDTLERVNRLLACYKGTHNFHNFTSQKGPRD 300 Query: 166 SSPIRTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I V I+V +SF+ QIR +G + + G + +E+ Sbjct: 301 PSAKRYIMEMYCGEPFVRENVEFAVIQVRGQSFMMHQIRKMIGLVIAIVKGYAAESIMER 360 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 361 SW--GEEKVDVPKAPGLGLVLEKVHFE 385 >gi|324517253|gb|ADY46767.1| tRNA pseudouridine synthase-like protein 1 [Ascaris suum] Length = 315 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 107/291 (36%), Gaps = 47/291 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHAL 58 RY + I Y+GS + + +G + + + F GE + A RTD GVHAL Sbjct: 5 RRYLLWISYDGSRFPEMAKGGSGYGVLDFLTTILRSSFPNVGERLKSSAASRTDRGVHAL 64 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTIS---------ILNLSIVDKQFHARFSAIR 109 R + E+ + K L ++I+ IL+ V F AR + Sbjct: 65 RNAIIIQVPLEYGILDQRKD--TLLAEWNSIAEQCKPKALQILDFHTVSPGFSARRNVSY 122 Query: 110 RSYLYRIITRQAPLAL-------------EKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 R Y YR+ A E+ AW++P D + A G H+ Sbjct: 123 RCYKYRVCVALTSDAWQRFKEKPSLMHYAERDYAWILPPGFDLYKAQQACSIFKGTHNMA 182 Query: 157 TF-------RSIHCQASSPIRTIDHFDVNSFGN---------LIEIRVVARSFLHTQIRS 200 +F R + S IR + H + + +++ SFL Q+R Sbjct: 183 SFFKHRERDRRKENEYPSAIRHMRHVAITGGEPRCIDDADHAFYDFSIISTSFLREQVRR 242 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGP----LAPPEGLYFDSVEYS 247 +G + G+ + +E L+ +AP +GL+ ++V Y Sbjct: 243 MIGIIVAHAYGRVSRELIEWLLKNPHPTNFFTRRLLIAPAQGLFLENVVYD 293 >gi|332254114|ref|XP_003276176.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Nomascus leucogenys] Length = 421 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 98/268 (36%), Gaps = 31/268 (11%) Query: 2 IRYCMIIEYNGSGYFGWQ-RQKN---GSSIQGSIEKAIFL---------VTGEIVVVHGA 48 + +++ Y+G GY G Q R +I+ + A+ + Sbjct: 77 RKIVLLMAYSGKGYHGMQWRNLGSLQAQTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 136 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 137 ARTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCD 191 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQ 164 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 192 ARTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 249 Query: 165 ASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 S R I IRV +SF+ QIR VG + + G + LE Sbjct: 250 EPSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 309 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ ++ P AP GL + V + Sbjct: 310 RSWGSEKVD--VPKAPGLGLVLERVHFE 335 >gi|194043580|ref|XP_001928625.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2 [Sus scrofa] gi|311270525|ref|XP_003132902.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Sus scrofa] Length = 400 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 57 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 116 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 117 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 171 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENM---RIAAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E + G H+F F S + Sbjct: 172 RTYFYMLPT--FAFAHKDHDVQDETYRLSTETLQRVNRLLACYKGTHNFHNFTSQKGPRE 229 Query: 166 SSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I + V I+V +SF+ QIR VG + + G + LE+ Sbjct: 230 PSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPESVLER 289 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 290 SW--GEAKVDVPKAPGLGLVLERVHFE 314 >gi|301091109|ref|XP_002895746.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4] gi|262096658|gb|EEY54710.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4] Length = 470 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 110/301 (36%), Gaps = 60/301 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 RY + + + G Y G Q + +I+ +E+A+F G + + A RTD Sbjct: 71 RRYGLWVAFCGKNYCGMQMNEGVKTIEAELERALFEAGGIAESNYGYLQKIGWSRAARTD 130 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA Q+ L ++A L + I ++++ V K F+A+ + +R+Y Sbjct: 131 KGVHAAGQLLTAKLHVGDDIAGFMAKVDAAL--PEDIRVMHMVTVTKNFNAKMTCDQRTY 188 Query: 113 LYRII----------------------TRQAPL------------------ALEKGRAWL 132 Y T Q P LE +A+ Sbjct: 189 EYLAPTFIFGKRMRSSASKNEEKQAEGTNQWPSNLRDSEEGFDSNVVIDNTTLEAHKAFR 248 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS-----FGNLIEI 186 + + E + + VG H+F F + R I F+ + + Sbjct: 249 LSDEI-LEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQNDMEWVRL 307 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 RVV +SFL IR +G+ V G + +E+A++ K P AP GLY + Sbjct: 308 RVVGQSFLLHHIRKMIGTAVEVVSGVSDPSTIERAMELT--KMDLPKAPSVGLYLAQAHF 365 Query: 247 S 247 Sbjct: 366 E 366 >gi|316969725|gb|EFV53781.1| tRNA pseudouridine synthase A [Trichinella spiralis] Length = 380 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 100/260 (38%), Gaps = 62/260 (23%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----------------TGEIV 43 M RY Y GS + G Q Q N ++QG +E ++ GE Sbjct: 71 MPRYFFNFAYLGSRFSGSQSQPNQLTVQGVLEVSLIKFAYFDCRQNVLAMILLSPLGEEP 130 Query: 44 VVHGAGRTDSGVHALRQVAHFDL--VREWVPVILCKALNAYL-KISDTISILNLSIVDKQ 100 + + RTD+GVHA A DL R++ L ALN+ L K+ I I + V Sbjct: 131 RWYFSSRTDAGVHAFMNTATVDLDPERDFDSDYLKSALNSMLTKLDMEIRINSCRRVSGG 190 Query: 101 FHARFSAIRRSYLYRIIT----------------------RQAPLALEKGRAWLIPKSLD 138 F AR A+ R YLYR+ + +E RAW + + + Sbjct: 191 FCARRHALEREYLYRLAILKPEFESDHHKQTNNTSTTQNAHHSLPLIEHRRAWALSSAFN 250 Query: 139 CENMRIAAQHLVGRHDFTTFRS------IHCQASSPIRTIDHFDV--------------N 178 E R AA G H+F +F + + ++ I D+ + Sbjct: 251 HERFRKAALMFQGSHNFASFMTNSVGNLDRPTGIATVKNISRLDIDFGKALMDSKHEPCS 310 Query: 179 SFGNLIEIRVVARSFLHTQI 198 F N ++ V+RSFL+ Q+ Sbjct: 311 DFFNFFDVSFVSRSFLYNQV 330 >gi|321464475|gb|EFX75483.1| hypothetical protein DAPPUDRAFT_323292 [Daphnia pulex] Length = 429 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 48/260 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ +I+ + KA+ + E H GRTD GV + Sbjct: 69 VLLQVAYVGWDYAGFVVQEHTEKTIEAEVFKALEKTRLLESRETSNYHRCGRTDKGVSSF 128 Query: 59 RQVAHFDLVR--------EWVPVILCKALNA---------YLKISDTISILNLSIVDKQF 101 Q DL K N + I ++ + +++ Sbjct: 129 GQAISIDLRSNLSEGKGVFIPDGHQAKVGNTVEIDYVGILNKVLPPEIRMIAWAPINQSL 188 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS- 160 ARF +R+Y Y + +L+ E MR+A+Q L+G HDF Sbjct: 189 SARFDCRQRTYHY----------------YFPKANLNIERMRVASQSLIGEHDFRNLCKM 232 Query: 161 -IHCQASSPIRTIDHFDVNSFGN-------LIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + R I + + + +I ++++ ++FL Q+R V L L+G GK Sbjct: 233 DVGNGVIKFDRRIMDIQIEAIDDDKANSYSMIRLKLIGQAFLWHQVRCIVAILFLIGQGK 292 Query: 213 WTSTDLEKALQAQDRKECGP 232 +T +++ L +R P Sbjct: 293 EETTIIQELLNV-ERNPRKP 311 >gi|296213295|ref|XP_002753209.1| PREDICTED: tRNA pseudouridine synthase A [Callithrix jacchus] Length = 428 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 85 RKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 144 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N +L I IL L V F+++ Sbjct: 145 RTDKGVSAAGQVVSL---KVWLIDGILEKINRHL--PSHIRILGLKRVTGGFNSKNKCDA 199 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E ++ G H+F F S Q Sbjct: 200 RTYCYLLPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYEGTHNFHNFTSQKGPQE 257 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I IRV +SF+ QIR VG + + G + LE+ Sbjct: 258 PSARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESLLER 317 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + K P AP GL + V + Sbjct: 318 SW--GTEKVDVPKAPGLGLVLERVHFE 342 >gi|156405521|ref|XP_001640780.1| predicted protein [Nematostella vectensis] gi|156227916|gb|EDO48717.1| predicted protein [Nematostella vectensis] Length = 300 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 89/258 (34%), Gaps = 35/258 (13%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDSGV 55 ++I Y G GY G Q +I+ + A+ + RTD GV Sbjct: 5 ALLISYCGVGYAGMQINPGVRTIEEQLINALHQAEVITDDAKECLGKMSFQRCARTDKGV 64 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV + L +N++L I I + K F + + R+Y Y Sbjct: 65 SAARQVVSLKISA---LSSLLPKINSFL--PPEIRIFGMIKTTKAFDCKQNCSARTYEYL 119 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDH 174 T A K K E + A + G ++ F S + S R I Sbjct: 120 TPT----FAFAKDYVSRTEK---IEEINKALSNYKGTKNYHNFTSGKKFEDPSANRYIIS 172 Query: 175 FDV----NSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 F G + + V +SF+ QIR +G + V G S+ + Sbjct: 173 FKCGKPFERNGREFVVLTVKGQSFVLHQIRKMIGLVIAVVRGVAPSSTFDLI-------- 224 Query: 230 CGPLAPPEGLYFDSVEYS 247 P AP GL D+V + Sbjct: 225 DIPKAPALGLVLDTVHFD 242 >gi|119618936|gb|EAW98530.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens] gi|119618939|gb|EAW98533.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens] Length = 338 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 94/261 (36%), Gaps = 30/261 (11%) Query: 8 IEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 + Y+G GY G QR +I+ + A+ + RTD GV Sbjct: 1 MAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A QV + W+ + + +N++L I IL L V F+++ R+Y Y Sbjct: 61 SAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNRCDARTYCYL 115 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQASSPIRT 171 + T A + L E ++ G H+F F S Q S R Sbjct: 116 LPT--FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRY 173 Query: 172 IDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 I IRV +SF+ QIR VG + + G + LE++ Sbjct: 174 ILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW--GT 231 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 K P AP GL + V + Sbjct: 232 EKVDVPKAPGLGLVLERVHFE 252 >gi|291227559|ref|XP_002733751.1| PREDICTED: PseudoUridine Synthase family member (pus-1)-like [Saccoglossus kowalevskii] Length = 320 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 25/258 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ Y+G GY G QR K +I+G + KAI + + RTD Sbjct: 56 RKVVLLLSYSGKGYMGMQRNKGVETIEGDLIKAIVTAGAVPQSHADIPQKMQFQRCARTD 115 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+RQV + + + +N L +I ++ F+A+ + R+Y Sbjct: 116 KGVSAVRQVVSL---KMMLVDNAVEQINNSL--PPSIRVITYKRTTGGFNAKNTCSHRTY 170 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRT 171 Y + T + + + + + G H+F F S S +R Sbjct: 171 SYLMPTFALSSNCNENY--RVTDEVHQKA-QDLLNCYKGTHNFHNFTSGKAFTEQSAMRF 227 Query: 172 IDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + +V+ + I ++ +SF+ QIR +G + + G + L+K +A Sbjct: 228 MRELNVSQAFVRCGLEFVVITIIGQSFMIHQIRKMIGLVIAIIRGVAPKSTLDKCWEAG- 286 Query: 227 RKECGPLAPPEGLYFDSV 244 K P AP GL ++V Sbjct: 287 -KMDIPKAPSLGLMLENV 303 >gi|10640247|emb|CAC12061.1| tRNA-pseudouridine synthase I related protein [Thermoplasma acidophilum] Length = 257 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 94/247 (38%), Gaps = 33/247 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y Y GS + G+QR S++ +I + +G + A RTD V AL Sbjct: 6 MTNYAFKFGYEGSYFTGFQRGNGDHSVEDTIIDTL-KASGFDYAIKAAARTDRYVSALSN 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L P + +N+ + D I + + + V F+ R ++Y Y I Sbjct: 65 V--FSLETGRSPEAVAGLINSRI---DHIYVHSYAEVPDDFNPRH-CTFKTYRYYI---- 114 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LDC ++ I +G HDF F + + + +RTI + + Sbjct: 115 ------------LRQDLDCISLDINLGKFIGTHDFRRF--VRADSRNTVRTIINASCKND 160 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + ARSFL QIR+ V + +R +A + L Sbjct: 161 NGLLYLEFSARSFLWNQIRTMVAFILD----NIGVE--TDPFSTSERY--PRVARAQNLL 212 Query: 241 FDSVEYS 247 + Y Sbjct: 213 LWDIYYD 219 >gi|19922728|ref|NP_611646.1| CG3045 [Drosophila melanogaster] gi|7291383|gb|AAF46811.1| CG3045 [Drosophila melanogaster] gi|16182987|gb|AAL13605.1| GH14326p [Drosophila melanogaster] gi|220945178|gb|ACL85132.1| CG3045-PA [synthetic construct] gi|220955082|gb|ACL90084.1| CG3045-PA [synthetic construct] Length = 499 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 93/265 (35%), Gaps = 47/265 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 101 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALARTCLIESRATSNYHRCGRTDKEVSAF 160 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + ARF Sbjct: 161 CQVISIDLRSKHPPESQLDPTALSSEIDYCGLLNRVL--PKNIQCVAWMPLRSPVYSARF 218 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 + R+Y Y + LD MR A LV DF F +H Sbjct: 219 DCVSRTYRY----------------YFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHN 262 Query: 164 QASSPIRTIDHFDV---------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 ++ +R + V NS ++ + + A +FL QIR + L LVG K Sbjct: 263 GVTNYMRNLQSARVEACDQTNHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKEN 322 Query: 215 STDLEKALQAQDRKECGPLAPPEGL 239 + L + P GL Sbjct: 323 PGVISDLLDVESNPCKPQYTPAIGL 347 >gi|16082568|ref|NP_394390.1| tRNA pseudouridine synthase A [Thermoplasma acidophilum DSM 1728] gi|24212586|sp|Q9HJN5|TRUA_THEAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 252 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 94/247 (38%), Gaps = 33/247 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y Y GS + G+QR S++ +I + +G + A RTD V AL Sbjct: 1 MTNYAFKFGYEGSYFTGFQRGNGDHSVEDTIIDTL-KASGFDYAIKAAARTDRYVSALSN 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L P + +N+ + D I + + + V F+ R ++Y Y I Sbjct: 60 V--FSLETGRSPEAVAGLINSRI---DHIYVHSYAEVPDDFNPRH-CTFKTYRYYI---- 109 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LDC ++ I +G HDF F + + + +RTI + + Sbjct: 110 ------------LRQDLDCISLDINLGKFIGTHDFRRF--VRADSRNTVRTIINASCKND 155 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + ARSFL QIR+ V + +R +A + L Sbjct: 156 NGLLYLEFSARSFLWNQIRTMVAFILD----NIGVE--TDPFSTSERY--PRVARAQNLL 207 Query: 241 FDSVEYS 247 + Y Sbjct: 208 LWDIYYD 214 >gi|281340805|gb|EFB16389.1| hypothetical protein PANDA_012338 [Ailuropoda melanoleuca] Length = 359 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 100/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 28 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRCA 87 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 88 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCDA 142 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E +R G H+F F S Sbjct: 143 RTYFYMLPT--FAFAHKDHDVQDERYRLSAETLRRVNGLLACYRGTHNFHNFTSQKGPHE 200 Query: 166 SSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 +S R I + V I+V +SF+ QIR VG + V G + LE+ Sbjct: 201 ASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLER 260 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 261 SW--GEAKVDVPKAPGLGLVLERVHFE 285 >gi|194882124|ref|XP_001975163.1| GG20714 [Drosophila erecta] gi|190658350|gb|EDV55563.1| GG20714 [Drosophila erecta] Length = 497 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 95/264 (35%), Gaps = 46/264 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 100 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALSRTCLIDSRANSNYHRCGRTDKEVSAF 159 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + ARF Sbjct: 160 CQVISIDLRSKHSPEFQLDPTALSTEIDYCGLLNRVL--PKNIQCVAWMPLRSPVYSARF 217 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 + RSY Y + LD M A L DF F +H Sbjct: 218 DCVSRSYRY----------------YFPKGDLDIGAMSQACDLLERHADFRNFCKMDVHN 261 Query: 164 QASSPIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++ +R + V NS ++ + + A +FL QIR + L LVG K + Sbjct: 262 GVTNYMRNLQSARVVACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKESP 321 Query: 216 TDLEKALQAQDRKECGPLAPPEGL 239 T + + L + +P GL Sbjct: 322 TVISELLDVESNPCKPQYSPAIGL 345 >gi|251823909|ref|NP_001156523.1| tRNA pseudouridine synthase A [Ovis aries] gi|238815029|gb|ACR56711.1| pseudouridylate synthase 1 [Ovis aries] Length = 400 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 100/274 (36%), Gaps = 44/274 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 57 RKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 116 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 117 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 171 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL----------VGRHDFTTFR 159 R+Y Y + T A L E R++A+ L G H+F F Sbjct: 172 RTYFYMLPT----FAF-----AHKDHDLQDETYRLSAETLGRVNRLLACYKGTHNFHNFT 222 Query: 160 S-IHCQASSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S S R I + V I+V +SF+ QIR VG + + G Sbjct: 223 SQKGPHEPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYA 282 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 LE+ + K P AP GL + V + Sbjct: 283 PEGVLERCW--GEAKVDVPKAPGLGLVLERVHFE 314 >gi|301775629|ref|XP_002923235.1| PREDICTED: tRNA pseudouridine synthase A-like [Ailuropoda melanoleuca] Length = 426 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 100/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 89 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRCA 148 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 149 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCDA 203 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E +R G H+F F S Sbjct: 204 RTYFYMLPT--FAFAHKDHDVQDERYRLSAETLRRVNGLLACYRGTHNFHNFTSQKGPHE 261 Query: 166 SSPIRTI-----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 +S R I + V I+V +SF+ QIR VG + V G + LE+ Sbjct: 262 ASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLER 321 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 322 SW--GEAKVDVPKAPGLGLVLERVHFE 346 >gi|126323933|ref|XP_001378494.1| PREDICTED: similar to Pseudouridine synthase 1 [Monodelphis domestica] Length = 435 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL------VTGEIVV---VHGAG 49 + +++ Y+G GY G QR +I+ + A+ GE + Sbjct: 100 RKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVFALVQSGCIPENHGEDMRKMAFQRCA 159 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A Q+ + W+ + + +N++L I IL L V F+++ Sbjct: 160 RTDKGVSAAGQIVSL---KVWLIDNILEKINSHL--PSHIRILGLKRVTGSFNSKNRCDA 214 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T A + L E + G H F F S + Sbjct: 215 RTYFYMLPT--FAFAHKDHDVQDETYRLSSETLEKVNQLLASYKGTHSFHNFTSQKGPKE 272 Query: 166 SSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I V I+V +SF+ QIR VG + + G + +E+ Sbjct: 273 PSARRYIMEMHCEAPFVREGMEFAVIKVKGQSFMMHQIRKMVGLVIAIMKGYVPESVMER 332 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 333 SW--GEEKVDIPKAPGLGLVLERVHFE 357 >gi|308507857|ref|XP_003116112.1| CRE-PUS-1 protein [Caenorhabditis remanei] gi|308251056|gb|EFO95008.1| CRE-PUS-1 protein [Caenorhabditis remanei] Length = 438 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 96/267 (35%), Gaps = 25/267 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---------VHGAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ + +A+ A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMEKAGWITAAQRDKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V A RQ+ L R+ A + D I + + FH + R+Y Sbjct: 94 AVSAARQMCGMQLPRDDDKYQTDGAGVLNNLLPDDIRVFGMRRTINFFHPQKQCDYRTYS 153 Query: 114 YRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRT 171 Y + A A+ +PK + G H+F + + S R Sbjct: 154 YTCPSFVFAKPTELTNSAFRLPKET-LAEVNDILSIYKGTHNFFNYTAKRAYNDMSSNRY 212 Query: 172 IDHFDVNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 I F+ ++I V +SF+ QIR VG + V + +++ Sbjct: 213 IVSFECKEPFLFRDEFRKEDVEFVQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQR 272 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + Q + P+AP GL + Y Sbjct: 273 SFEGQ--RMDIPMAPGLGLLLERTHYD 297 >gi|268568248|ref|XP_002647980.1| C. briggsae CBR-PUS-1 protein [Caenorhabditis briggsae] gi|187040672|emb|CAP20635.1| CBR-PUS-1 protein [Caenorhabditis briggsae AF16] Length = 437 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 92/266 (34%), Gaps = 23/266 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---------VHGAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ + +A+ A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMEKAGWITAAQREKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V A RQ+ L R+ + + + I + + FH + R+Y Sbjct: 94 AVSAARQMCGMQLPRDDEKYKVDGPGILNNLLPNDIRVFGMKRTINFFHPQKQCDYRTYS 153 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTI 172 Y T E A + G H+F + + S R I Sbjct: 154 YTCPTFVFAKPTELTNAAFRISKETLAEVNDILSIYKGTHNFFNYTAKRAYDDMSSNRYI 213 Query: 173 DHFDVNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 F+ I+I V +SF+ QIR VG + V + ++++ Sbjct: 214 VSFECKEPFLFRDEFRKEDVEFIQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQRS 273 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 + Q + P+AP GL + Y Sbjct: 274 FEGQ--RMDIPMAPGLGLLLERTHYD 297 >gi|56693277|ref|NP_001008603.1| tRNA pseudouridine synthase A [Danio rerio] gi|56269412|gb|AAH86827.1| Pseudouridine synthase 1 [Danio rerio] Length = 376 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 100/264 (37%), Gaps = 26/264 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAI---------FLVTGEIVVVHGAGR 50 + +++ Y+G GY+G QR +I+ + A+ + + + R Sbjct: 41 KVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRSAR 100 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GV A+ +V + W+ + + +NA+L I +L V F+++ + R Sbjct: 101 TDKGVSAVGRVVSL---KVWMIENILEKINAHL--PPRIRVLGCKRVTGGFNSKNNCYAR 155 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLD-CENMRIAAQHLVGRHDFTTFRS-IHCQASSP 168 +Y Y + T + D + + G H+F F S + S Sbjct: 156 TYSYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFCLYKGTHNFHNFTSQKGHRDPSA 215 Query: 169 IRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R I H + I V +SF+ QIR +G + V G +EK+ Sbjct: 216 MRYITHMSCGEPFIRKDVEFAVITVRGQSFMMHQIRKMIGLVIAVVKGYVDEGVMEKSW- 274 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 + K AP GL + V + Sbjct: 275 -GEEKVGVSKAPGLGLVLERVHFD 297 >gi|195488597|ref|XP_002092382.1| GE11697 [Drosophila yakuba] gi|194178483|gb|EDW92094.1| GE11697 [Drosophila yakuba] Length = 497 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 93/264 (35%), Gaps = 46/264 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 100 VLLKITYFGWDYQGFACQEDSNDTIEANLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 159 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + ARF Sbjct: 160 CQVISIDLRSKHPPESQLDPTAISTEIDYCGLLNRVL--PKNIQCVAWMPLRSPVYSARF 217 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 + RSY Y + LD M A LV DF F +H Sbjct: 218 DCVSRSYRY----------------YFPKGDLDIAAMSKACDLLVRHADFRNFCKMDVHN 261 Query: 164 QASSPIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++ +R + V NS ++ + + A +FL QIR + L LVG K Sbjct: 262 GVTNYMRNLQSARVEACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENP 321 Query: 216 TDLEKALQAQDRKECGPLAPPEGL 239 + K L + P GL Sbjct: 322 AVISKLLDVESNPCKPQYTPAIGL 345 >gi|256087150|ref|XP_002579739.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665218|emb|CAZ35978.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 369 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 100/259 (38%), Gaps = 30/259 (11%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGVHALRQ 60 Y+G GY+G QR +I+G + KA+F + V A +TD V AL Q Sbjct: 2 YSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVSALGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-- 118 V L + L LN L + I +L++ V + F + S R Y Y + T Sbjct: 62 VCSMQLKEDTD---LLSKLNNSL--PENIRVLDIIRVTRGFSSYSSCTHRIYDYLLPTFA 116 Query: 119 -RQAPLALEKGRAWLIPKSLDCENM---RIAAQHLVGRHDFTTFRSIH-CQASSPIRTID 173 A +L W L E + + G H+F F S S R I Sbjct: 117 LSPATSSLNDSTCWTYR--LTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCSRYII 174 Query: 174 HFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + IR+ +SF+ QIR +G V G T + + ++ R Sbjct: 175 SAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYAT-EAVFDIVFSKARI 233 Query: 229 ECGPLAPPEGLYFDSVEYS 247 + P AP GL + V++S Sbjct: 234 DI-PKAPGLGLMLNQVDFS 251 >gi|301604562|ref|XP_002931922.1| PREDICTED: tRNA pseudouridine synthase A [Xenopus (Silurana) tropicalis] Length = 399 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 102/267 (38%), Gaps = 30/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + +A+ L + + Sbjct: 55 RKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDELVQALVLSGCIPDNHAEDMKKMSFQRCA 114 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + + +N L I IL L V +F+++ S Sbjct: 115 RTDKGVSAAGQVVSL---KIWLIDNVVEKINENL--PSHIRILGLKRVTGRFNSKNSCDA 169 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENM---RIAAQHLVGRHDFTTFRS-IHCQA 165 R+Y Y + T + + A L E + G +F F S + Sbjct: 170 RTYSYTLPT--FAFSHKDKEAQDENFRLSQETLNRVNELLALYKGTRNFHNFTSQKGPRD 227 Query: 166 SSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I L I+V +SF+ QIR +G + V G ++ +E+ Sbjct: 228 PSAKRYIMEMHCEPPFQQGGLELAVIKVKGQSFMMHQIRKMIGLVIAVVKGFAPTSIIER 287 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP GL + V + Sbjct: 288 SW--GEEKVDIPKAPGLGLVLERVHFE 312 >gi|226468594|emb|CAX69974.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum] Length = 388 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 92/279 (32%), Gaps = 60/279 (21%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G Q ++ + A+ GRTD GV + Sbjct: 71 IALKLSYLGWQYCGLVPQGCYTLTVMDRLLDALEKAKLIENRSECSFSVCGRTDKGVSGI 130 Query: 59 RQVA-------------------HFDLVREWVPVI---LCKALNAYLKISDTISILNLSI 96 QV R+ VP LN L I +L S Sbjct: 131 CQVVSFVSRSVVAEGVGVIEDSGCRISERQEVPDKEMDFVSILNRNL--PRDIRVLAWSP 188 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 V +F+ARF RRSY Y LD E+M A LVG HDF Sbjct: 189 VSPEFNARFDCRRRSYEYYFPES----------------GLDIESMIDAGNRLVGVHDFR 232 Query: 157 TFRSIHCQAS--SPIRTIDHFDVN------SFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 F + + S +R I +N L + V A FL+ QIR L +V Sbjct: 233 NFCASRIEKDTVSFVREIFEVVINVVDSSDHHTKLYCLCVSASGFLYHQIRYIASILFMV 292 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G G + + ++ L A P+ Y + +Y Sbjct: 293 GRGYESPSVIDDMLD-----LTKTPAKPQ--YQLAADYP 324 >gi|326774000|ref|ZP_08233282.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] gi|326636139|gb|EGE37043.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] Length = 169 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 11/149 (7%) Query: 109 RRSYLYRIITRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y YRI AP + +P +LD E M +A+ L+G HDF ++ + ++ Sbjct: 2 SRRYTYRIADAAAPRDPARRATVLWLPDALDVEAMDASARALLGEHDFLSYCKPR-EGAT 60 Query: 168 PIRTIDHFDVNSFG---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 IRT+ L+ + VVA +F H+ +RS VG+ VG G+ T Sbjct: 61 TIRTLRTLQWRRIEAGPDAGPESGLVTLSVVADAFCHSMVRSLVGAGLAVGQGRKPVTWP 120 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L A+ R+ P+APP GL + V Y Sbjct: 121 RELLDARTRQSAAPVAPPHGLTLEEVTYP 149 >gi|194755854|ref|XP_001960194.1| GF13245 [Drosophila ananassae] gi|190621492|gb|EDV37016.1| GF13245 [Drosophila ananassae] Length = 492 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 87/248 (35%), Gaps = 46/248 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G Q++ + +I+ + +A+ H GRTD V A Sbjct: 100 VLLKVSYFGWDYQGLACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 159 Query: 59 RQVAHFDLVREWVPVILCKA------------LNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P A LN L I + + + + ARF Sbjct: 160 CQVISIDLRSKHPPESQLDATSISSEIDYCGLLNRVL--PKNIQCVAWMPLRSPVYSARF 217 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 + R+Y Y + LD M+ A HLV DF F +H Sbjct: 218 DCVARTYRY----------------YFPKGDLDIPAMQEACNHLVRHADFRNFCKMDVHN 261 Query: 164 QASSPIRTIDHFDVN--------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++ R + V S ++ + + A +FL QIR + L LVG K Sbjct: 262 GVTNYTRNLQSARVEACEETLTDSGYDMYYLEIQANAFLWHQIRCIMAVLILVGQKKEKP 321 Query: 216 TDLEKALQ 223 + + L Sbjct: 322 SVVTDLLD 329 >gi|300709217|ref|XP_002996775.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01] gi|239606099|gb|EEQ83104.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01] Length = 313 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 19/221 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++I Y+G Y G K+G SI I+ A+ L T +V+ AGRTD GV A+ VA Sbjct: 39 IALLISYHGEKYRGLAECKDGDSIGNRIKNALLLSTLADHIVY-AGRTDKGVSAIGMVAS 97 Query: 64 FDLVREWVPVILCKALN------------AYLKISDTISILNLSIVDKQFHARFSAIRRS 111 + LN + + I ++ + V+ F ARF+ I+R Sbjct: 98 VKIKSLLRENTSRYFLNDDDNHEFNYQAILNNYLPEDIRVIGWAPVEDGFSARFTCIKRK 157 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y Y P K I D M Q ++ +F +++ RT Sbjct: 158 YRYYFTN---PFVKIKN---QIRLKYDINKMEEMCQKILTLKNFYNLSKHSDKSARYNRT 211 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +D + G+L + + A+SFLH +R L++ G + Sbjct: 212 VDICQIIKEGDLYYLDIQAKSFLHNMVRKIFWVLEMAGKDE 252 >gi|195346649|ref|XP_002039870.1| GM15659 [Drosophila sechellia] gi|194135219|gb|EDW56735.1| GM15659 [Drosophila sechellia] Length = 498 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 93/264 (35%), Gaps = 46/264 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 101 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 160 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + ARF Sbjct: 161 CQVISIDLRSKHPPESQLDPTSLSSEIDYCGLLNRVL--PKNIQCVAWMPLRSSVYSARF 218 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 + RSY Y + LD MR A LV DF F +H Sbjct: 219 DCVSRSYRY----------------FFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHN 262 Query: 164 QASSPIRTIDHFDV--------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++ +R + V NS ++ + + A +FL QIR + L LVG K Sbjct: 263 GVTNYMRNLQSARVEACDENHTNSGYDMYYLEIRANAFLWHQIRCIMAVLILVGQKKEKP 322 Query: 216 TDLEKALQAQDRKECGPLAPPEGL 239 + L + P GL Sbjct: 323 AIISDLLNVESNPCKPQYTPAIGL 346 >gi|17565126|ref|NP_507242.1| PseudoUridine Synthase family member (pus-1) [Caenorhabditis elegans] gi|3880517|emb|CAA16518.1| C. elegans protein W06H3.2a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 415 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 92/266 (34%), Gaps = 23/266 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---------VHGAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ + +A+ A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V A RQ+ L R+ A + I + + FH + R+Y Sbjct: 94 AVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRTTNFFHPQKQCDHRTYS 153 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTI 172 Y + E + + +G H+F + + S R I Sbjct: 154 YTCPSFVFAKPTELTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYDDMSSNRYI 213 Query: 173 DHFDVNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 F+ ++I + +SF+ QIR VG + V + ++++ Sbjct: 214 ISFECKEPFLFRDDFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELHLKSSIQRS 273 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 + Q + P+AP GL + Y Sbjct: 274 FEGQ--RMDIPMAPGLGLLLERTHYD 297 >gi|302851624|ref|XP_002957335.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] gi|300257294|gb|EFJ41544.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] Length = 642 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 92/259 (35%), Gaps = 50/259 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y G Y G+ RQ N + +IE R GV AL + Sbjct: 111 VALELMYVGWSYQGFARQDNT---ENTIEA------------SSVKRGWGGVVALNLRSV 155 Query: 64 FDLVREWVPVIL----CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + P+ L + +N L + +L + V + F++ Y+Y Sbjct: 156 ARVDEPEAPLELEYDYPRLVNKAL--PPDVRVLGWTAVPENFNS-------RYVY----- 201 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVN 178 P E SLD + MR AA VG HDF F S R I F ++ Sbjct: 202 -HPDPPES-----CRYSLDIDAMRAAAARFVGEHDFRNFCKPDVATVRSFRRRILSFTLD 255 Query: 179 SFG--------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRK 228 + I V +FL Q+R L +VG G+ + + L +A RK Sbjct: 256 PVPTSSSDGAHRVFAITVRGTAFLWHQVRCMAAVLLMVGRGQERPEVVSELLDVEAHPRK 315 Query: 229 ECGPLAPPEGLYFDSVEYS 247 +AP E L + +S Sbjct: 316 PQYSMAPEEPLLLYACGFS 334 >gi|260781560|ref|XP_002585875.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae] gi|229270936|gb|EEN41886.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae] Length = 312 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 85/229 (37%), Gaps = 53/229 (23%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+Q Q+ ++I+ + +A+ + H GRTD GV A Sbjct: 70 VALKVAYLGWSYDGFQSQETTDNTIEARLFEALTKTRLIEKRQSSNYHRCGRTDKGVSAF 129 Query: 59 RQVAHFDLVREWV----------------------PVILCKALNAYLKISDTISILNLSI 96 QV DL + LN L I +L + Sbjct: 130 GQVISLDLRTNLTDGAGVIPRPEGTANHREGDKTTEIKYVYILNKVL--PPDIRVLAWAP 187 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 VD F ARFS +R+Y Y + +LD ++M +A Q LVG HDF Sbjct: 188 VDPDFSARFSCQQRTYKY----------------FFPKGNLDIQSMHLAGQKLVGEHDFR 231 Query: 157 TFRSIH--CQASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQ 197 F + + + IR I V G + E +VV +FL Q Sbjct: 232 NFCKMDVANRVVTFIRRIISTHVCVTGEETGGYQMCEFQVVGNAFLWHQ 280 >gi|321464083|gb|EFX75094.1| hypothetical protein DAPPUDRAFT_12957 [Daphnia pulex] Length = 319 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 31/265 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 ++ +++ Y+G Y G Q +++G + +A + + + V A RTD Sbjct: 4 KFAILLSYSGQNYLGMQFNHGFKTVEGELFQAFMKLEIMDDESFKSPQTVHFQRAARTDK 63 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+RQV + L LN+ L + I + + V F+++ + RSY Sbjct: 64 GVSAVRQVISLKIRT--PDEDLVNQLNSLL--PNCIKVFAMRKVTGGFNSKIACDSRSYS 119 Query: 114 YRIITRQAPLALEKGRA-----WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 Y + T A + + + + + G ++ F S Q S Sbjct: 120 YVMPT----FAFTSKEVAPTHGYRVTSKI-LDEVNSLLSVFKGTRNYHNFTSGRPAQDPS 174 Query: 168 PIRTIDHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 R I F ++I + +SF+ QIR +G V G L+KA Sbjct: 175 CKRYITQFSCGDPFMIKEVEFVKITIKGQSFMLHQIRKMIGLTISVMRGFVPREILDKAF 234 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 + + P AP L + Y Sbjct: 235 --KMERVNVPTAPSLNLLLEEPHYD 257 >gi|158298879|ref|XP_319023.4| AGAP009903-PA [Anopheles gambiae str. PEST] gi|157014098|gb|EAA14028.4| AGAP009903-PA [Anopheles gambiae str. PEST] Length = 457 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 94/244 (38%), Gaps = 46/244 (18%) Query: 50 RTDSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKIS-DTISILNLSIVDKQFHAR 104 RTD+GVHAL H DL R + + K LN + ++ IL+ V FHAR Sbjct: 11 RTDTGVHALHNTVHVDLQRPNGKPYDSDRITKTLNRAFEKDGQSLRILSTVRVPASFHAR 70 Query: 105 FSAIRRSYLYRI----------------ITRQAPLALEKGRAWLI-PKSLDCENMRIAAQ 147 A R+YLYR+ + E R + + D A+ Sbjct: 71 LCAKSRTYLYRLAVLKREYARESGRQQHPHARFIPIEEHDRCYFLGHSEFDINAFASVAR 130 Query: 148 HLVGRHDFTTFRSIHC------QASSPIRTIDHFDVNS---------------FGNLIEI 186 G HDF TF ++ +A +R ID V + + ++ Sbjct: 131 MFEGMHDFRTFMAVAKGNPRQQEAMHSLRRIDQITVERGHTMTAAFNRERTEHYYDFWDV 190 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFDS 243 R+ RSFL+ Q+R VG+ +G+ T D+ + L + +AP LY Sbjct: 191 RIRGRSFLYRQVRRMVGAWVAAAEGRITERDIYRMLTVPSQNSWCSNVFVAPAYALYLCH 250 Query: 244 VEYS 247 VEY Sbjct: 251 VEYD 254 >gi|225427081|ref|XP_002275354.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 448 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 63/315 (20%), Positives = 107/315 (33%), Gaps = 74/315 (23%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-------------VHGAGR 50 + +++ Y+G+ + GWQ+Q +++QG +E ++ E V AGR Sbjct: 125 FKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGR 184 Query: 51 TDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GV AL+QV F ++ V V + A+N + ++++S V + FH FSA Sbjct: 185 TDKGVTALQQVCSFYTWKKDVKVQDIEDAING--AAPGKLRVISVSEVSRIFHPNFSAKW 242 Query: 110 RSYLYRIITRQAPL--------------ALEKGR-------------------------- 129 R Y Y + + Sbjct: 243 RHYFYIFPLNDGDDGEQISENEMDIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDG 302 Query: 130 ---AWLIPKSLDCENMRIAAQHLVGR--------HDFTTFRSIHC-------QASSPIRT 171 + P + + + L G+ D R+I A + Sbjct: 303 EFESRKKPSTFSISRVDQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEAR 362 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + D ++ I +VA FL +R V + L K + A R+ Sbjct: 363 LQFSDDGEGTKVMCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATA 422 Query: 232 PLAPPEGLYFDSVEY 246 P APP+GL V + Sbjct: 423 PPAPPDGLCLIDVGF 437 >gi|312221288|emb|CBY01228.1| similar to pseudouridylate synthase 3 [Leptosphaeria maculans] Length = 597 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 67/365 (18%), Positives = 91/365 (24%), Gaps = 121/365 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---------------------- 37 + Y G Y G++ KN +I+ + KA+ Sbjct: 72 IALKFAYLGQRYNGFEHHKNNSTPLPTIEEELWKALVKTRLINPIPTQGDATGYSRVDRK 131 Query: 38 -----------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV--------------- 71 V E GRTD GV A QV + Sbjct: 132 TFAAWDREGADVNWEGCEYSKCGRTDRGVSAFGQVIGVRVRSNRPLPKTAKAQDELSASE 191 Query: 72 ---------------PVILCKALN-----------AYLKISDTISILNLSI-VDKQFHAR 104 P K+ N + I + F AR Sbjct: 192 QAKTSEEPISMADSEPETEGKSFNDLTDELPYIQHLNRVLPPDIRVYAWCPNPPPDFSAR 251 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKS-----------LDCENMRIAAQHLVGRH 153 FS R Y Y + S LD E MR Q L+G H Sbjct: 252 FSCKERRYKYFFTNPSFAPVPGSSGVYNTHTSSPTATRTREGWLDIEAMRKGCQQLIGLH 311 Query: 154 DFTTFRSIHC--QASSPIRTIDHFD---------------------------VNSFGNLI 184 DF F I Q S+ R I H D V L Sbjct: 312 DFRNFCKIDASKQLSNFQRRIFHADIEEVSPLSIPSFLSHPALQSPWANSPAVEQQPKLY 371 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFD 242 + +FL Q+RS + L L+G G + + L A + +A L Sbjct: 372 SFTLHGSAFLWHQVRSLIAVLFLIGQGLEPPSLISSLLDISANPTRPKYEMASDAPLVLW 431 Query: 243 SVEYS 247 + Sbjct: 432 DCIFP 436 >gi|290562699|gb|ADD38745.1| tRNA pseudouridine synthase 3 [Lepeophtheirus salmonis] Length = 420 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 93/277 (33%), Gaps = 60/277 (21%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 + I Y G Y G+ Q++ +I+ + KA+ E H GRTD GV Sbjct: 58 RKVLFQITYFGWNYHGFTTQEDSCMTIEAHLFKALLTTCLIQSRETSNYHRCGRTDKGVS 117 Query: 57 ALRQVAHFDL---------------------VREWVPVILCKALNAYLKISDTISILNLS 95 A RQV D+ + K +N+ L I ++ + Sbjct: 118 AFRQVISIDVRTNLKEGIGVFDYPDCKADSRPDMPHEIDYIKIINSNL--PPDIQLIAWT 175 Query: 96 IV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 +++ ARF +R+Y Y M A LVG HD Sbjct: 176 PAQNRELSARFDCKKRTYKYFFPLGSIKS---------------LSKMNEAGAKLVGSHD 220 Query: 155 FTTFRSIHC------------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 F F + S+ + +S +L ++V +FL QIR V Sbjct: 221 FRNFCKMDVSNGVLTYIRRMVNVSTSVLEPSKEKESSPYDLCVLKVEGNAFLWHQIRCIV 280 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L +G G+ +++ L + P P GL Sbjct: 281 TVLFHIGQGREEPELIDELLDIEK----NPCRPQYGL 313 >gi|195429481|ref|XP_002062787.1| GK19511 [Drosophila willistoni] gi|194158872|gb|EDW73773.1| GK19511 [Drosophila willistoni] Length = 495 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 90/250 (36%), Gaps = 48/250 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 109 VLLKVTYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRANSNYHRCGRTDKEVSAF 168 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL ++ C LN L I + + + + ARF Sbjct: 169 CQVISIDLRSKYPAESQLDPTSLATEIDYCGLLNRVL--PKNIQCVAWMPLRSPVYSARF 226 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 I RSY Y + LD E M+ A Q LV DF F +H Sbjct: 227 DCIARSYRY----------------YFPKGDLDIEAMQEACQLLVNHADFRNFCKMDVHN 270 Query: 164 QASSPIRTIDHFDVNSFGN----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 +S +R + V + + + A +FL QIR + L LVG K Sbjct: 271 GVTSFMRNLQAARVQPCEQTRNEKVSGYAMFYLEIKANAFLWHQIRCIMAILLLVGQRKE 330 Query: 214 TSTDLEKALQ 223 S+ + L Sbjct: 331 KSSIISDLLD 340 >gi|310794568|gb|EFQ30029.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001] Length = 570 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 91/345 (26%), Gaps = 110/345 (31%) Query: 4 YCMIIEYNGSGYFGW--QRQKNGSSIQGSIEKAIFL-----------VTGEIVVVHGAGR 50 + + Y G Y G+ + +I+G + A+ V + GR Sbjct: 94 IALKLAYLGKRYGGFEYAASASLPTIEGELWNALTKACLIFPEDPDVVNFDCCEYSKCGR 153 Query: 51 TDSGVHALRQVAHFD--------------------------------------------- 65 TD GV A QV Sbjct: 154 TDRGVSAFGQVIGLRVRSNKPLPKKPEEEAAAAEAEEGDTAMAGTAEEEEKKKRQEQTQK 213 Query: 66 --------LVREWVPVILCKALNAYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRI 116 + K LN L D I I F ARFS R Y Y Sbjct: 214 QKKKPEKEWDDINDEIQYVKVLNRLL--PDDIRITAWCPSPPPDFSARFSCEERQYRYFF 271 Query: 117 ITRQA----------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQ 164 P L +G LD E M AAQ VG HDF F + Q Sbjct: 272 TQPAFTPTAATSDGTPSGLREGY-------LDIEAMNEAAQRFVGDHDFRNFCKVDGSKQ 324 Query: 165 ASSPIRTIDHFDVNSFGN--------------------LIEIRVVARSFLHTQIRSFVGS 204 ++ R + V + + + +FL QIR V Sbjct: 325 ITNFERRMFEASVGEVRDVGSALPYLGCSAADGGQLPKVYSFNIRGTAFLWHQIRHMVTI 384 Query: 205 LKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L LVG + + L + RK LA L + + Sbjct: 385 LFLVGQRLERPELVTELLDVEKSPRKPNYDLAHETPLVLWNCVFP 429 >gi|159117386|ref|XP_001708913.1| Pseudouridine synthase, putative [Giardia lamblia ATCC 50803] gi|157437027|gb|EDO81239.1| Pseudouridine synthase, putative [Giardia lamblia ATCC 50803] Length = 351 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 99/275 (36%), Gaps = 56/275 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 +R +++ ++G+ + G Q GS+++G++ + + T + + + GRTD+ Sbjct: 1 MRVALLVAFHGTAFHGNAYQPTGGSTVEGALFEGLQKTGYLKENETIKDIELERTGRTDA 60 Query: 54 GVHALRQVAHFDLVR----------------------EWVPVIL---------CKALNAY 82 GV A + L + P + C A + Sbjct: 61 GVSAECMLYTLQLGKLVPAVPCLPPHNSRVLGALEGLPIEPSSICIHTSGSATCLAFHLN 120 Query: 83 LKISDTISILNLS-IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 + I +L LS + K F AR S + R Y Y + + +P +L E Sbjct: 121 RVLPSQIRVLGLSTAIPKDFSARHSCVAREYEYILG-------------YNVPPNL-REK 166 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASS-PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 AAQ +G + F F + R I +V N V+ +FL+ Q+R Sbjct: 167 ANSAAQRFLGSNSFHNFCHHERDHKTVYNRQIYCSEVYEHENACIFHVIGSAFLYHQVRY 226 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 L + G + +E L ++ G P Sbjct: 227 MASMLIHIMAGLENESAIEYLL-TKELSISGHSFP 260 >gi|315304909|ref|ZP_07875014.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] gi|313626716|gb|EFR95744.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] Length = 127 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 8 MTRYKAVISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 67 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD KAL IS + + FHARF + + Y Y I Sbjct: 68 QVIHFDSELAISAEKFQKALQVM--TPFDISFITVEETPADFHARFGTVGKEYRYII 122 >gi|303317424|ref|XP_003068714.1| pseudouridylate synthase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240108395|gb|EER26569.1| pseudouridylate synthase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 610 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 99/376 (26%), Gaps = 139/376 (36%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G+ NG +I+ + KA+ Sbjct: 96 IALKFAYLGQRYNGY-EHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNR 154 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFD-------------------------- 65 + E GRTD GV A QV Sbjct: 155 LLRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDIPSSVTP 214 Query: 66 --------------------LVREWVPVILCKALNAYLKISDTISILNLSI-VDKQFHAR 104 + + LN L + I IL F AR Sbjct: 215 VESPLGGLDIDVCDLEAEEAWDDIADELPYIQMLNGVL--PEDIRILAWCPHPPPGFDAR 272 Query: 105 FSAIRRSYLYRIIT-----RQAPLALEKG---------RAWLIPKSLDCENMRIAAQHLV 150 FS R Y Y P K R LD + MR A+ + Sbjct: 273 FSCRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGW----LDIDAMREGAKRFI 328 Query: 151 GRHDFTTFRSIHC--QASSPIRTIDHFDV------------------NSFGNL------- 183 G HDF F + Q ++ +R I H D+ F +L Sbjct: 329 GSHDFRNFCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHLGQQERAA 388 Query: 184 ----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECG 231 V +FL Q+R VG L L+G G + + + L +++ R+ Sbjct: 389 SGGHNAALKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTY 448 Query: 232 PLAPPEGLYFDSVEYS 247 +A L + Sbjct: 449 EIASDAPLVLWDCVFP 464 >gi|316970789|gb|EFV54664.1| tRNA pseudouridine synthase A [Trichinella spiralis] Length = 390 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 90/266 (33%), Gaps = 37/266 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV---------VVHGAGRTDS 53 +Y M + Y G Y G Q N +++ I +A+ + V A RTD Sbjct: 53 KYAMFLAYRGKNYHGMQVNPNVPTVEKYIMEALQKLNLITVDQVVQPSLFKFQRAARTDK 112 Query: 54 GVHALRQVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A +Q+ L LN L K F ++ RSY Sbjct: 113 GVSATKQICSLLLPTIEGKENDTVNLLN------------GLQRATKSFDSKKWCDYRSY 160 Query: 113 LYRI--ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPI 169 Y + + LE+ + L K D E + VG H+F F S S Sbjct: 161 SYTLPSYCFRHQSDLERDKFRLDNK--DIEEINRILMQYVGTHNFYNFTSGKLHKDESCK 218 Query: 170 RTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 R I + + + + +SFL QIR +G + G +K Q Sbjct: 219 RFIIRCECGKRFLYNNIEYLTVDIKGQSFLIHQIRKMIGFCISLIRGDLDPCLQQKVWQN 278 Query: 225 QDRKECGPLAPPEGLYFDSV---EYS 247 + + P AP GL + V Y Sbjct: 279 E--RIKVPKAPSLGLVLEEVRMPHYE 302 >gi|255609446|ref|XP_002539049.1| pseudouridylate synthase, putative [Ricinus communis] gi|223509026|gb|EEF23334.1| pseudouridylate synthase, putative [Ricinus communis] Length = 132 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 52/119 (43%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+G+ + GWQ Q N + +Q +IE AI V GE V +H AGRTDSGVHAL QV Sbjct: 16 MKIAIGIEYHGAYFQGWQSQPNAAGVQDAIEHAIKQVGGETVRLHAAGRTDSGVHALMQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHF+ + NA+L + IL + V FHARFSA RSY Y + + Sbjct: 76 AHFETSVVRPLSAWVRGTNAHL--PAWVRILWATEVAADFHARFSARARSYQYVLHNMR 132 >gi|328771895|gb|EGF81934.1| hypothetical protein BATDEDRAFT_87010 [Batrachochytrium dendrobatidis JAM81] Length = 491 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 98/288 (34%), Gaps = 53/288 (18%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +++ Y G+GY G Q + SI+ + KA+ + RTD GVHA Sbjct: 96 MPKKKVVLLMSYCGTGYQGMQINPDVPSIELDLHKAL--AASGAIAFMRCARTDKGVHAG 153 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV + + + +NA L I + + V +QFHA+ R Y Y + T Sbjct: 154 GQVVSLKM--IIQDSDIIERINARL--PPQIRVWGYARVQQQFHAKHHCDSRIYEYILPT 209 Query: 119 ------RQAPLALEKGRAWL----------------IPKSLDCEN--------------- 141 L K IP+ D E Sbjct: 210 SVLKKVDPTYYPLSKIGVAAGVTFENMGRAKMEPIEIPEHTDNEKETIQGYRTNHQELEE 269 Query: 142 MRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNS-----FGNLIEIRVVARSFLH 195 R VG H++ F + S IR I F + + ++V +SF+ Sbjct: 270 FRAILNEYVGTHNYHNFTIGRKFEDKSSIRYIISFICSEPFQRDNTEWVSLKVKGQSFML 329 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 QIR +G ++ + +Q R P AP GL + Sbjct: 330 HQIRKMIGLAVMMMRTSTPKNLIASTF-SQTRINI-PKAPALGLLLER 375 >gi|242215757|ref|XP_002473691.1| predicted protein [Postia placenta Mad-698-R] gi|220727176|gb|EED81103.1| predicted protein [Postia placenta Mad-698-R] Length = 495 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 102/327 (31%), Gaps = 97/327 (29%) Query: 2 IRYCMIIEYNGSGYFG--WQRQKNG-SSIQGSIEKAIFL------VTG-EIVVVHGAGRT 51 + + YNG+ Y G +Q+ +++ + A+ TG E GRT Sbjct: 48 RKIALKFTYNGADYSGLEFQKTPTTLPTVEAVLFDALVHTRLIDPATGFEGCGWEKCGRT 107 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKAL----------------------------NA-- 81 D GV A QV + + +L NA Sbjct: 108 DRGVSAAGQVISLWVRSALGQARVRTSLEDANVMDVHPTGLEGDLALMGEWDETPTNAAR 167 Query: 82 ----------------YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + TI ++ S V F ARFS R Y Y Sbjct: 168 PATPQATNELRYITLLNNVLPPTIRVIAWSPVGPDFSARFSCRYRHYKY----------- 216 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVNSFG-- 181 + P+ LD M+ AA LVG HDF + Q ++ R I +N Sbjct: 217 -----FFSPEGLDLAAMQDAADRLVGEHDFRNLCKLDPSKQLTTFARKILSARLNPAQAD 271 Query: 182 ---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL---QAQDRKECGP--- 232 L + ++ +FL+ Q+R + L LVG + ++ L AQ R P Sbjct: 272 GASTLYVLDLIGTAFLYNQVRHIMAVLFLVGTKLEHPSVIDALLNVDAAQPRAPSRPGEP 331 Query: 233 ------------LAPPEGLYFDSVEYS 247 +A P L Y Sbjct: 332 FPQVIPSKPEYQMADPLPLMLWECAYD 358 >gi|118395831|ref|XP_001030261.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila] gi|89284557|gb|EAR82598.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila SB210] Length = 297 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 29/251 (11%) Query: 20 RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 RQK +I ++++ + V + + RTD GV+A + F L R+ + + Sbjct: 22 RQKESININIKNQQSLNNFAKQEVFIKSSSRTDVGVNARKHPVQFVLQRDS-----KRGV 76 Query: 80 NAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRI-----ITRQAPLALEKGRAWLI 133 N YL+ + I+I + V +F R +++ Y++ I + PL K ++W I Sbjct: 77 NFYLRDAGDQIAINEVYQVPMEFDVRNDCLQKEYVFYIDSQVGYNWENPLLFYK-QSWCI 135 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIH---CQASSPIRTIDHFDVNSFGNL------- 183 P +D + ++ A Q +GRH+F F S Q + ++ F++ + N Sbjct: 136 PDQIDIDRLKQAFQKYLGRHNFYLFTSPEPFQTQFDLFEKELNSFEITHYPNEHFPKIQS 195 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA-------QDRKECGPLAPP 236 I I V + FL Q+R VG L K L L + R A P Sbjct: 196 IRISVKGKGFLKYQVRYMVGIAVLYAQKKIDENYLNYLLNPTGFIPQDERRNLIRLKAKP 255 Query: 237 EGLYFDSVEYS 247 EGL+ V+Y Sbjct: 256 EGLFLYDVQYD 266 >gi|198427214|ref|XP_002128771.1| PREDICTED: similar to Pseudouridine synthase 1 [Ciona intestinalis] Length = 531 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 96/267 (35%), Gaps = 32/267 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAI---------FLVTGEIVVVHGAG 49 + M+ Y G+ Y G Q + +I+G + +A+ + + A Sbjct: 69 RKVAMLFAYCGANYHGLQMNRGERWIKTIEGDLFQALVDAKVVPSNCVQEPHKMTYKSAS 128 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV QVA L + + +N +L + I ++ + + F+A+ A Sbjct: 129 RTDKGVSTCGQVASLKL---RLNENVVGLINQHL--PEDIVVMAVRRTTQGFNAQLKAEG 183 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENM---RIAAQHLVGRHDFTTFRSIHCQAS 166 R+Y Y + T A + + + + G H F F S Sbjct: 184 RTYSYTLPT----FAFADYGTGNTSYKITEDKLLKVKSILYRYKGTHSFHNFTSGKRMGE 239 Query: 167 -SPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I F+ + I + + +SF+ QIR +G L + +G + Sbjct: 240 MSAQRFIIEFEHGDPFLVQNVEFITLTIKGQSFMLHQIRKMIGLLIAMVNGLAKEQHFIR 299 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 A E P AP GL + V Y Sbjct: 300 AFSEP--LEDIPKAPGTGLVLEKVHYD 324 >gi|315124345|ref|YP_004066349.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018067|gb|ADT66160.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 178 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 6/180 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + + L K LN + I I + V F RF R Y Y I + Sbjct: 60 ASVECGDHFVNLEYLQKQLNKF--SHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHS 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + PK D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPK-FDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 175 >gi|67525425|ref|XP_660774.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4] gi|40744565|gb|EAA63741.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4] Length = 625 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 69/359 (19%), Positives = 100/359 (27%), Gaps = 117/359 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAI------------------------ 35 + Y G Y G + N +I+ + KA+ Sbjct: 128 IALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGDEDVPDRKAKRK 187 Query: 36 ----FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK-------------- 77 F ++ E AGRTD GV A QV + K Sbjct: 188 EIEPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETTRE 247 Query: 78 ------------------ALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT 118 LN L + I +L + F AR+S R Y Y Sbjct: 248 TVADEDWDDIADELPYISLLNKAL--PEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQ 305 Query: 119 ---RQAPLAL----EKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHC--QASS 167 P L KG A + LD + MR AA++ G HDF F + Q + Sbjct: 306 PAFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIEN 365 Query: 168 PIRTIDHFDVN-------------------------------------SFGNLIEIRVVA 190 R I D+ + + Sbjct: 366 FERIIYRADIELLDPRNSPLGYVNRPEFSALNYPDTDSLTQKPAGSVPPGCQVYVFNLQG 425 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 +FL Q+R VG L LVG G + + + + L RK +A L + + Sbjct: 426 SAFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVFP 484 >gi|189241446|ref|XP_973048.2| PREDICTED: similar to CG34140 CG34140-PA [Tribolium castaneum] Length = 258 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 96/243 (39%), Gaps = 48/243 (19%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--------SIQGSIEKAIFLVTGE-IVVVHGAGRTDS 53 RY + Y G+ + G QRQ G ++QG +E A+ + VV+ + RTDS Sbjct: 5 RYLLHFSYIGTPFMGAQRQVTGRMPRPDDPSTVQGQLEMALKRLNPTNDPVVYLSSRTDS 64 Query: 54 GVHALRQVAHFDLVR----EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAI 108 GVHAL H DL R E+ P + LN Y ++ I ++ V FH R +AI Sbjct: 65 GVHALNSTCHVDLYRSNELEYEPKTITICLNRYFDKNEVPIRVIKTYWVPPDFHCRHTAI 124 Query: 109 RRSYLYRIITRQA------------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 R+YLYRI + P+ + + S + + M+ AA+ G HDF Sbjct: 125 SRTYLYRIAIAKTGVTEHATILNLLPIEEYQRCLFFYCDSFNIDEMKEAAKVFEGLHDFR 184 Query: 157 TFRSIHCQASSPI--RTIDHFDVN--------------------SFGNLIEIRVVARSFL 194 TF I R + DV +I V A FL Sbjct: 185 TFMGRGSHDPDKITRRVVTRVDVCDGRALTYSSFSWPRFASGSAENYQFYDIYVQATGFL 244 Query: 195 HTQ 197 + Q Sbjct: 245 YRQ 247 >gi|259485874|tpe|CBF83268.1| TPA: pseudouridylate synthase 3 (AFU_orthologue; AFUA_3G13350) [Aspergillus nidulans FGSC A4] Length = 664 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 69/359 (19%), Positives = 100/359 (27%), Gaps = 117/359 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAI------------------------ 35 + Y G Y G + N +I+ + KA+ Sbjct: 167 IALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGDEDVPDRKAKRK 226 Query: 36 ----FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK-------------- 77 F ++ E AGRTD GV A QV + K Sbjct: 227 EIEPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETTRE 286 Query: 78 ------------------ALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT 118 LN L + I +L + F AR+S R Y Y Sbjct: 287 TVADEDWDDIADELPYISLLNKAL--PEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQ 344 Query: 119 ---RQAPLAL----EKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHC--QASS 167 P L KG A + LD + MR AA++ G HDF F + Q + Sbjct: 345 PAFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIEN 404 Query: 168 PIRTIDHFDVN-------------------------------------SFGNLIEIRVVA 190 R I D+ + + Sbjct: 405 FERIIYRADIELLDPRNSPLGYVNRPEFSALNYPDTDSLTQKPAGSVPPGCQVYVFNLQG 464 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 +FL Q+R VG L LVG G + + + + L RK +A L + + Sbjct: 465 SAFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVFP 523 >gi|320038677|gb|EFW20612.1| pseudouridylate synthase 3 [Coccidioides posadasii str. Silveira] Length = 588 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 100/376 (26%), Gaps = 139/376 (36%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G+ NG +I+ + KA+ Sbjct: 100 IALKFAYLGQRYNGY-EHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNR 158 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFD-------------------------- 65 + E GRTD GV A QV Sbjct: 159 LLRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDIPSSVTP 218 Query: 66 --------------------LVREWVPVILCKALNAYLKISDTISILNLSI-VDKQFHAR 104 + + LN L + I IL F AR Sbjct: 219 VESPPGGLDIDVCDLEAEEAWDDIADELPYIQMLNGVL--PEDIRILAWCPHPPPGFDAR 276 Query: 105 FSAIRRSYLYRIIT-----RQAPLALEKG---------RAWLIPKSLDCENMRIAAQHLV 150 FS R Y Y P K R LD + MR A+ + Sbjct: 277 FSCRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGW----LDIDAMREGAKRFI 332 Query: 151 GRHDFTTFRSIHC--QASSPIRTIDHFDVN------------------------------ 178 G HDF F + Q ++ +R I H D+ Sbjct: 333 GSHDFRNFCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAA 392 Query: 179 SFGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECG 231 S G+ + V +FL Q+R VG L L+G G + + + L +++ R+ Sbjct: 393 SGGHNAALKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTY 452 Query: 232 PLAPPEGLYFDSVEYS 247 +A L + Sbjct: 453 EIASDAPLVLWDCVFP 468 >gi|119186911|ref|XP_001244062.1| hypothetical protein CIMG_03503 [Coccidioides immitis RS] Length = 537 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 67/376 (17%), Positives = 99/376 (26%), Gaps = 139/376 (36%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G+ NG +I+ + KA+ Sbjct: 100 IALKFAYLGQRYNGY-EHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNR 158 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFD-------------------------- 65 + E GRTD GV A QV Sbjct: 159 LLRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDTPSSVTP 218 Query: 66 --------------------LVREWVPVILCKALNAYLKISDTISILNLSI-VDKQFHAR 104 + + LN L + I IL F AR Sbjct: 219 VESPLGGLDIDVSDLEAEEAWDDIADELPYIQMLNGVL--PEDIRILAWCPHPPPGFDAR 276 Query: 105 FSAIRRSYLYRIIT-----RQAPLALEKG---------RAWLIPKSLDCENMRIAAQHLV 150 FS R Y Y P K R LD + MR A+ + Sbjct: 277 FSCRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGW----LDIDAMREGAKRFI 332 Query: 151 GRHDFTTFRSIHC--QASSPIRTIDHFDV------------------NSFGN-------- 182 G HDF F + Q ++ +R I H D+ F + Sbjct: 333 GSHDFRNFCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAA 392 Query: 183 ---------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECG 231 + V +FL Q+R VG L L+G G + + + L +++ R+ Sbjct: 393 SGSHNAALKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTY 452 Query: 232 PLAPPEGLYFDSVEYS 247 +A L + Sbjct: 453 EIASDAPLVLWDCVFP 468 >gi|302854296|ref|XP_002958657.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] gi|300255982|gb|EFJ40260.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] Length = 188 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 19/176 (10%) Query: 7 IIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ Y+G + G+Q Q ++QG +E+ + + GA RTD G HA QV HFD Sbjct: 15 VVAYDGCEFAGFQFQAGKVRTVQGELERGAKRLFHGCSRMVGASRTDGGAHAYGQVVHFD 74 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + AL + + +L LS + F + FS+ ++YLY+ P L Sbjct: 75 VYGTRDSLE-SDALYYNSFLPPDVRVLGLSYAEDGFDSHFSSCGKTYLYKFAAG-LPDPL 132 Query: 126 EKGRAWLIPK----------------SLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 + W + LD M+ AA L+GRHDF+ F A Sbjct: 133 QSKYRWWVYDRWCERSRGKPGKLSDVELDVGLMQQAADMLLGRHDFSAFMDNKRPA 188 >gi|66803188|ref|XP_635437.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] gi|60463746|gb|EAL61924.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] Length = 596 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 104/284 (36%), Gaps = 47/284 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 + +I+ Y+G+ Y G Q+ +++ +E A+F G + V RTD Sbjct: 141 KVAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCARTDK 200 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A+R V + P + ++ I++ ++ V+ FHA+ + RSY+ Sbjct: 201 GVSAIRNVVSLKME-MGPPDFEGMKIALNKELPKDITVFHIMRVNNSFHAKNAVDARSYI 259 Query: 114 YRIITRQAPLALEKGRAWLIPKSLD----------------CENMRIAAQHLVGRHDFTT 157 Y T K ++ ++ + + +G H F Sbjct: 260 YVTPTHVFEPKFSKKNKSIVEEAANGGENNTQPPWKFTSDTLSILNKVLSFYLGNHRFHN 319 Query: 158 FRSIH-CQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKL-VGD 210 + S S R I F + ++ I VV SF+ QIR +G L + Sbjct: 320 YTSRKESNDVSVFRKIHSFVCSEPFVLEGVEMVSINVVGESFMLHQIRKMIGCLISFIRK 379 Query: 211 GKWTSTDLEKALQAQDRKECG------------PLAPPEGLYFD 242 G + D E QA D+ + P+AP GL D Sbjct: 380 GMF--EDCETRDQAFDQIKAYINSTFEHTPLNLPMAPGAGLLLD 421 >gi|159127305|gb|EDP52420.1| pseudouridylate synthase 3 [Aspergillus fumigatus A1163] Length = 610 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 69/358 (19%), Positives = 95/358 (26%), Gaps = 119/358 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 116 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPREL 174 Query: 38 ----VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV---------------------- 71 ++ E AGRTD GV A QV + Sbjct: 175 KPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDVEMTSGGQADDT 234 Query: 72 ----PVILCKALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAPL 123 + + D I IL F ARFS R Y Y P Sbjct: 235 WDDIADEIPYISILNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPTPG 294 Query: 124 AL--------EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTI 172 L +K + + + LD + MR AA++ G HDF F + Q + R I Sbjct: 295 PLGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERII 354 Query: 173 DHFDVN-----------------------------SFGNL--------IEIRVVARSFLH 195 H D+ G + +FL Sbjct: 355 YHADIELLDPKDHPLGYVNQPGFQALQDAPARTSAESGTFTSPAAAKVYVFNLHGSAFLW 414 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL------APPEGLYFDSVEYS 247 Q+R V L LVG G T + L + C P AP L + Sbjct: 415 HQVRHMVSILFLVGQGLEPPTIVRDLLDV-SKNPCKPTYEMASDAP---LVLWDCIFP 468 >gi|70999131|ref|XP_754287.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293] gi|66851924|gb|EAL92249.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293] Length = 610 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 69/358 (19%), Positives = 95/358 (26%), Gaps = 119/358 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 116 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPREL 174 Query: 38 ----VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV---------------------- 71 ++ E AGRTD GV A QV + Sbjct: 175 KPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDVEMTSGGHADDT 234 Query: 72 ----PVILCKALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAPL 123 + + D I IL F ARFS R Y Y P Sbjct: 235 WDDIADEIPYISILNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPTPG 294 Query: 124 AL--------EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTI 172 L +K + + + LD + MR AA++ G HDF F + Q + R I Sbjct: 295 PLGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERII 354 Query: 173 DHFDVN-----------------------------SFGNL--------IEIRVVARSFLH 195 H D+ G + +FL Sbjct: 355 YHADIELLDPKDHPLGYVNQPGFQALQDAPARTSAESGTFTSPAAAKVYVFNLHGSAFLW 414 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL------APPEGLYFDSVEYS 247 Q+R V L LVG G T + L + C P AP L + Sbjct: 415 HQVRHMVSILFLVGQGLEPPTIVRDLLDV-SKNPCKPTYEMASDAP---LVLWDCIFP 468 >gi|255087382|ref|XP_002505614.1| predicted protein [Micromonas sp. RCC299] gi|226520884|gb|ACO66872.1| predicted protein [Micromonas sp. RCC299] Length = 294 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 98/256 (38%), Gaps = 28/256 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + + Y G GY G+QR +I+ +E+AI G V A RTD Sbjct: 5 RKIAAFLAYVGKGYQGFQRNPGARTIEDELERAIVAAGGISADNAGDFTKVQWTRAARTD 64 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ Q +V P + + +NA L + I V F+A+ RR Y Sbjct: 65 KGVSAVGQCIALRMV--LDPPGVLERINAAL--PEGFKIFGYKRVTGGFNAKTMCDRRRY 120 Query: 113 LYRIIT---RQAPLALEK-----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHC 163 Y I T + +A++ + L + + G H+F + + Sbjct: 121 EYVIPTCAFDPRRCLPRREDDKEAKAFVFDEEL-RARVNKILGNYCGTHNFHNYTVRVDP 179 Query: 164 QASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 ++ +R I F+ + VV +SF+ QIR +G++ V G D Sbjct: 180 NDAAAMRYIISFECGEPFVIDGVEFVRTTVVGQSFMLHQIRKLIGTMLCVVRGYLAEEDQ 239 Query: 219 EKALQAQDRKECGPLA 234 AL+ ++ PLA Sbjct: 240 IFALKTKESCSHEPLA 255 >gi|121706104|ref|XP_001271315.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1] gi|119399461|gb|EAW09889.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1] Length = 604 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 68/356 (19%), Positives = 98/356 (27%), Gaps = 117/356 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ I KA+ Sbjct: 112 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEEIWKAMRRTRLIFPTDAEPFDDSRGPRAL 170 Query: 38 ----VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV---------------------- 71 ++ E AGRTD GV A QV + Sbjct: 171 KPYSLSWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPATEVTSDVDMTGLDAPAED 230 Query: 72 -----PVILCKALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAP 122 + + + I IL F ARFS R Y Y P Sbjct: 231 TWDDIADEIPYISMLNRVLPEDIRILAWCPQPPPGFDARFSCRERQYKYFFTQPAFSPTP 290 Query: 123 LAL--------------EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QAS 166 L K R LD + MR AA+H G HDF F + Q Sbjct: 291 GPLGLALQAVDSANKIPAKYREGW----LDIDAMREAAKHFEGVHDFRNFCKLDTSKQIE 346 Query: 167 SPIRTIDHFDVN---------------------------------SFGNLIEIRVVARSF 193 + R I H D+ + + + +F Sbjct: 347 NFERIIYHADIELVDPKHHPLGYVNQPGFQASENSVVGADTVAQATAAQVYVFNLHGSAF 406 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGLYFDSVEYS 247 L Q+R V L LVG G + + + + L +++ RK +A L + + Sbjct: 407 LWHQVRHMVSILFLVGQGLESPSIVAELLDVSKNPRKPTYEMASDAPLVLWNCIFP 462 >gi|302810046|ref|XP_002986715.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii] gi|300145603|gb|EFJ12278.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii] Length = 318 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 98/263 (37%), Gaps = 27/263 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--------TGEIVVVHGAGRTD 52 M + + + Y G+GY G QR ++I+G +E+A+ + + A RTD Sbjct: 1 MEKAALFVVYCGAGYKGMQRNPGAATIEGVLEEALVRAGAIGSNGCSRNWLDWKRAARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 V AL QV R ++ L N +L +I +L V F A+ R Y Sbjct: 61 KEVSALGQVVS---ARLYLTPDLVHRTNEFL--PGSIRLLGFKRVPDDFSAKKMCASRRY 115 Query: 113 LYRIITRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGR-HDFTTFR-SIHCQASSP 168 Y + A + + + D E +G H F F + Sbjct: 116 EYVLPI----FAFDPRTGDDLEEEFLFDFERFNQILGRFLGTDHSFHNFSWRVRPGDREA 171 Query: 169 IRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 RT+ F + I V+ARSF+ QIR VG V T + +AL+ Sbjct: 172 RRTVVEFRAADKIWIGGSEFVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINRALR 231 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 + + P AP GL D Y Sbjct: 232 S-EVDVIVPTAPEVGLLLDESFY 253 >gi|13541901|ref|NP_111589.1| tRNA pseudouridine synthase A [Thermoplasma volcanium GSS1] gi|24212574|sp|Q979R4|TRUA_THEVO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14325334|dbj|BAB60238.1| pseudouridylate synthase I [Thermoplasma volcanium GSS1] Length = 246 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 35/243 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y Y G + G+QR S++ +I KA+ L ++ A RTD GV AL V + Sbjct: 5 YFFKFGYIGYMFTGYQRGNGVKSVEDTIIKALNL--NSPSLIKTAARTDRGVSALSNVFY 62 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R P + +N+ ++ + + + + V+ + R+ ++Y+Y + Sbjct: 63 IETERR--PQDIAGIINSK---NEYVFVHSFAEVEHGRNPRY-CDTKTYMYML------- 109 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 P +C+++ + A +G HDF+ F + +P R+ID + Sbjct: 110 ----------PGETECDSLMVTASGFLGFHDFSKFSKKDTR--NPWRSIDEVKCHRESFG 157 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A+SFL Q+R + + K + +APPE L Sbjct: 158 VVLEFSAKSFLWNQVRRMLAFILEFRGNKIDPFSVSNIY--------SHIAPPENLILKD 209 Query: 244 VEY 246 + Y Sbjct: 210 IVY 212 >gi|330914180|ref|XP_003296528.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1] gi|311331289|gb|EFQ95392.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1] Length = 599 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 63/358 (17%), Positives = 95/358 (26%), Gaps = 114/358 (31%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---------------------- 37 + Y G Y G++ KN +I+ + KA+ Sbjct: 80 IALKFAYLGQKYNGFEHHKNNTTPLPTIEEELWKALVKTRLITPIPTAGGEKESYERIDR 139 Query: 38 ------------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLK- 84 V + GRTD GV A QV + ++ N L+ Sbjct: 140 KTFARWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKALQSPNETLET 199 Query: 85 -------------------------------------ISDTISILNLSIVDK-QFHARFS 106 + I + F ARFS Sbjct: 200 NEDENPPSSPASDSNPPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNPPADFSARFS 259 Query: 107 AIRRSYLYRIITRQAPLAL----EKGRAWLIPKS-----LDCENMRIAAQHLVGRHDFTT 157 R Y Y + P++ LD M+ HLVG HDF Sbjct: 260 CKERRYKYFFTNPCFAPVPGSSGRYNTSSTSPQAMREGWLDINAMKQGCAHLVGLHDFRN 319 Query: 158 FRSIHC--QASSPIRTIDHFDVNSF------------------------GNLIEIRVVAR 191 F I Q ++ R I H D+ L + Sbjct: 320 FCKIDASKQLTNFQRRIFHADIEEVSPLSVPAFLSHPALSTPGLPASEAPKLYSFTLHGS 379 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 +FL Q+RS + L L+G G + + K L +A + +A L + Sbjct: 380 AFLWHQVRSLIAVLFLIGQGLESPDIIPKLLDIEANPTRPKYEMASDAPLVLWDCIFP 437 >gi|300175988|emb|CBK22205.2| unnamed protein product [Blastocystis hominis] Length = 399 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 92/270 (34%), Gaps = 55/270 (20%) Query: 22 KNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHALRQVAHFDLVRE-------- 69 + +S++ +I A+ V GRTD+GV A QV L Sbjct: 17 ADDNSVESAIFSALKRVHLIDDISKCHYQRCGRTDAGVSAFNQVISLYLRSNLRSGVEFV 76 Query: 70 --WVPVILCKALNA-----------------------YLKISDTISILNLSIVDKQFHAR 104 + P I A N + TI I VD+ F AR Sbjct: 77 DEFDPSIPYNAPNTSNQPQSAPSSSTPVTEFDYASVLNKVLPPTIRITGWCPVDRSFSAR 136 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC- 163 +S + + + R + + ++ D E MR A + G HDF F I Sbjct: 137 YSCCGEDWAANLSAGRV------YRYYFLRRNYDVELMRSAVKLFEGEHDFRNFCRIDAV 190 Query: 164 QASSPIRTIDHFDV-------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 RT+ DV +++ + +V R+FL QIR + L LV K T Sbjct: 191 NVCDFTRTVFRGDVVEIRKGETPQHDVLAVEIVGRAFLWHQIRCMMSILFLVASKKEKQT 250 Query: 217 DLEKALQAQDRKECGP---LAPPEGLYFDS 243 + L + C P LA PE L Sbjct: 251 IISDLLDV-SKSPCKPQYHLADPEPLVLYD 279 >gi|325190406|emb|CCA24877.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14] Length = 463 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 72/300 (24%), Positives = 111/300 (37%), Gaps = 60/300 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 RY + Y G Y G Q + ++I+ +E+A+F G + + A RTD Sbjct: 72 RRYGFWVAYCGEKYSGMQLNEGVATIEAELERALFQAGGISDANYGFLQKIGWSRAARTD 131 Query: 53 SGVHALRQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHA 103 GVHA Q+ L + + +NA L I ++++ V K F+A Sbjct: 132 KGVHAAGQLVTAKLSFDSKSSEDRNGEQIKGFIEKINASL--PSDIRVMDMVTVTKNFNA 189 Query: 104 RFSAIRRSYLYRIIT--------RQAPLALEKGRA-WLIPKSLDC--------------- 139 + S R+Y Y I T + ++ +A ++PK+ D Sbjct: 190 KLSCDYRTYEYLIPTFVFAGRQRKDHKDPVKVTQAEEIVPKTTDLHLDVNHQQAYRMSTE 249 Query: 140 --ENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTIDHFDV-------NSFGNLIEIRVV 189 +++ G H F F S S R I F NS I +RV Sbjct: 250 QYDDLNRILAKFEGSHTFHNFTSKLLPTSPKCQRYIVSFKADQPFVPSNSAFEWIRLRVK 309 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK--ALQAQDRKECGPLAPPEGLYFDSVEYS 247 +SFL QIR +G+ + G S +E+ L D P AP GLY + Sbjct: 310 GQSFLLHQIRKMIGTAVDLCAGAAESNVIERVMLLDKMD----LPKAPSVGLYLSEAHFE 365 >gi|115391499|ref|XP_001213254.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624] gi|114194178|gb|EAU35878.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624] Length = 613 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 69/366 (18%), Positives = 99/366 (27%), Gaps = 123/366 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 110 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEELWKALRKTRLIFPTGATADDMREFQEPR 168 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV-------------------- 71 + E AGRTD GV A QV + Sbjct: 169 ALKPYALNWEGCEYSKAGRTDRGVSAFGQVVGIRVRSARPKKKAAVADPGADTPMQDGGE 228 Query: 72 ----------------PVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLY 114 L + + I +L + F ARFS R Y Y Sbjct: 229 GNVTADRSVDDNWDDIADELPYINLLNRVLPEDIRVLAWCPHPPEGFDARFSCRERQYKY 288 Query: 115 RIIT---RQAP-----LALEKGRAWLIPKS----LDCENMRIAAQHLVGRHDFTTFRSIH 162 P +A +PK LD E MR AA+ VGRHDF F + Sbjct: 289 FFTQPAFSPTPGPGGFAPRANDKAGSVPKYREGWLDIEAMREAARMFVGRHDFRNFCKLD 348 Query: 163 C--QASSPIRTIDHFDVN-------------------------------------SFGNL 183 Q + R I H D+ + + Sbjct: 349 TSKQIENFERIIYHSDIELVDPRSTPLGYVAQPGFTALESPSAEQGSGSLETPVPTASQV 408 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGLYF 241 + +FL Q+R V L LVG G + + + L +++ RK +A L Sbjct: 409 YVFSLQGSAFLWHQVRHMVSVLFLVGQGLEKPSIVSELLDVSKNPRKPSYEMASDAPLVL 468 Query: 242 DSVEYS 247 + Sbjct: 469 WDCIFP 474 >gi|242008043|ref|XP_002424822.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis] gi|212508372|gb|EEB12084.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis] Length = 430 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 89/254 (35%), Gaps = 44/254 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G G+ Q+N ++I+ + A+ E GRTD GV A Sbjct: 64 IFLKFCYFGWDTSGFVIQENTSNTIEQFMFDALKKCCLIENIETSNYQKCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWV---------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ + + C LN L I + + V +R Sbjct: 124 SQVISLDVRSKLENPNHENAEQEIEYCSMLNRLL--PPFIKCYSWAHVGSDVGSRHDCSE 181 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASS 167 R+Y Y + +LD MR AA+ L+G HDF + ++ Sbjct: 182 RTYKY----------------YFPKGNLDINLMREAAKSLLGSHDFRNLCKMDVANGITN 225 Query: 168 PIRTIDHFDV---------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 R I + D+ S + ++ FL+ QIRS + L LVG K + + Sbjct: 226 FNRNIIYADIKPCSFLLEKQSGYQFYIFEIKSKCFLYHQIRSIMSVLLLVGQKKESPDII 285 Query: 219 EKALQAQDRKECGP 232 L ++ P Sbjct: 286 NDLLDI-NKNPAKP 298 >gi|219120809|ref|XP_002185636.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582485|gb|ACI65106.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 293 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 98/290 (33%), Gaps = 52/290 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 ++ Y G+ Y G+Q + Q E A+ + +GRTD GVH Sbjct: 1 FLLAYVGTNYGGFQINDGQRTPQAEFELAMLRTRLLLPCNFGSPHKYSWSTSGRTDKGVH 60 Query: 57 ALRQVAHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A QV + + +N L D + +L++ + F A+ R Y Y Sbjct: 61 ACAQVVSAKVELLPDQTMAEVRDEMNTVL--PDDVRVLDVVRTTRNFCAKTQRDRVRYQY 118 Query: 115 RIITRQAPLA-----LEKGRAWLIPK--------------------------SLDCENMR 143 I + A L K + + ++ Sbjct: 119 MIPSFVFADADTLRVLFKDVVGHSNRGQSKAELLLPEELKSIQSALKDFRANPMHIAKLQ 178 Query: 144 IAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS------FGNLIEIRVVARSFLHT 196 A Q G H F F R + + R I+ F V I +V+ +SFL Sbjct: 179 EALQVYEGTHAFHNFSRGVKANEARAARYIERFHVEEPIVFPNGVEWIPTQVLGQSFLLN 238 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 QIR V V G T++ +AL+ Q +AP +GL+ + Y Sbjct: 239 QIRKMVCMAMDVARGVVPLTNVSRALERQS-DVRINVAPAQGLFLEMSYY 287 >gi|326474345|gb|EGD98354.1| pseudouridylate synthase [Trichophyton tonsurans CBS 112818] Length = 614 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 97/380 (25%), Gaps = 147/380 (38%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNYTEVPTIEEELWKALRKTRLIFPTHKNCTEEFSGKDNS 151 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI----------------- 74 + + GRTD GV A QV + Sbjct: 152 PSRPYEIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPADPNPSADLKGGDVMDSVVA 211 Query: 75 -------------------------------LCKALNAYLKISDTISILNLSI-VDKQFH 102 + LN L + I +L + F Sbjct: 212 TESGMADKNTQNGVSDTGAAKGWDDIADELPYIQILNGAL--PEDIRVLAWCPHLPPDFD 269 Query: 103 ARFSAIRRSYLYRIITRQAPLA-----------------LEKGRAWLIPKSLDCENMRIA 145 ARFS +R Y Y L + R LD E MR A Sbjct: 270 ARFSCRQRRYRYFFTQPAFCPTPGARGIVRSPELKDDLSLARPREGW----LDIEAMREA 325 Query: 146 AQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN------------------------- 178 AQ+ VG HDF F + Q ++ +R I D+ Sbjct: 326 AQYFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGPR 385 Query: 179 -------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + G + V +FL QIR VG L LVG G + + + L Sbjct: 386 NTGVPESVNDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVT 445 Query: 226 D--RKECGPLAPPEGLYFDS 243 R+ +A L Sbjct: 446 KNPRRPVYEMASDSPLVLWD 465 >gi|219117902|ref|XP_002179737.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408790|gb|EEC48723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 216 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 82/232 (35%), Gaps = 33/232 (14%) Query: 31 IEKAIFLVTGEIVVV--------HGAGRTDSGVHALRQVAHFDL--VREWVPVILCKALN 80 +EKA+F +V GRTD GV A Q L R K LN Sbjct: 2 VEKALFRALRTSRLVESRASSGYSRCGRTDKGVSAAGQQTDPPLRQQRALREHAYDKILN 61 Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE 140 L D I +L V F ARFSA + ++LD E Sbjct: 62 NLL--PDDIRVLGWIPVSDDFSARFSATS---------------RTYRYFFRRRRTLDVE 104 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQ-ASSPIRTIDHFDV---NSFGNLIEIRVVARSFLHT 196 MR + G HDF F + + + R ID ++ + +V ++FL Sbjct: 105 AMRQGLHRMQGTHDFRNFCKMDVEKVYNFERRIDKAEIVNMERDTGVSYFLIVGQAFLWH 164 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQ-AQDR-KECGPLAPPEGLYFDSVEY 246 QIR L +G G T + L AQ+ K PLA + L Y Sbjct: 165 QIRYMASILFAIGQGLETPELVTAMLDIAQNPGKPAYPLADEQPLVLHDCGY 216 >gi|50294374|ref|XP_449598.1| hypothetical protein [Candida glabrata CBS 138] gi|49528912|emb|CAG62574.1| unnamed protein product [Candida glabrata] Length = 317 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 96/271 (35%), Gaps = 40/271 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDSGV 55 +++ Y G+GY G Q +I + KA+ A RTD GV Sbjct: 2 ALVLGYLGTGYQGIQYNPPAHTIDNELFKALVATNCISQSNSDDFSKSSFSRATRTDKGV 61 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HAL + + R VP + LN L D I I ++ V K+F+AR A R Y Y Sbjct: 62 HALTNLVALKMQRYEVPQQVKAELNEIL--PDDIRIWDVVPVKKKFNARVMAGTRHYRYV 119 Query: 116 IITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSP--IR 170 I T + + + NM +G H++ F R A SP +R Sbjct: 120 IPTFLLQCGPHSDLSTSQLARFKNIWNM------FLGTHNYYNFTPRRKDTNADSPQNMR 173 Query: 171 TIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + V+ + I + +SFL QIR V + T + L+ Sbjct: 174 HMYSIQVSDPFTIAGSTQWLSIAIHGQSFLLHQIRKMVHYALSEYHRSSSDTKSMELLET 233 Query: 225 QDRKEC------------GPLAPPEGLYFDS 243 D PLAP GLY Sbjct: 234 VDPDLTSATALDTPTEQYIPLAPAAGLYLHH 264 >gi|302818082|ref|XP_002990715.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii] gi|300141453|gb|EFJ08164.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii] Length = 318 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 97/263 (36%), Gaps = 27/263 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--------TGEIVVVHGAGRTD 52 M + + + Y G+GY G QR +I+G +E+A+ + + A RTD Sbjct: 1 MEKAALFVVYCGAGYKGMQRNPGALTIEGVLEEALGRAGAIGSNGCSRNWLDWKRAARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 V AL QV R ++ L N +L +I +L V F A+ R Y Sbjct: 61 KEVSALGQVVS---ARLYLTPDLVHRTNEFL--PGSIQLLGFKRVPDDFSAKKMCDSRRY 115 Query: 113 LYRIITRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGR-HDFTTFR-SIHCQASSP 168 Y + A + + + D E +G H F F + Sbjct: 116 EYVLPV----FAFDPRTGDDLEEEFLFDFERFNQILGRFLGTDHSFHNFSWRVRPGDREA 171 Query: 169 IRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 RT+ F + I V+ARSF+ QIR VG V T + +AL+ Sbjct: 172 RRTVVEFRAADKIWIGGSEFVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINRALR 231 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 + + P AP GL D Y Sbjct: 232 S-EVDVIVPTAPEVGLLLDESFY 253 >gi|169604989|ref|XP_001795915.1| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15] gi|160706683|gb|EAT86574.2| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15] Length = 475 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 58/350 (16%), Positives = 92/350 (26%), Gaps = 106/350 (30%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---------------------- 37 + Y G Y G++ KN +I+ + KA+ Sbjct: 74 IALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTRLINPIPTTGDTADYNKADRK 133 Query: 38 -----------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV--------------- 71 V + GRTD GV A QV + Sbjct: 134 TFATWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNRPLPKQPAKEPESQENP 193 Query: 72 -------------PVILCKALN-----------AYLKISDTISILNLSI-VDKQFHARFS 106 P K N + I + + F ARFS Sbjct: 194 PAAEDELDILDSEPDAATKHFNEVTDELPYIQLLNRVLPPDIRVYAWCPNPPENFSARFS 253 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKS------LDCENMRIAAQHLVGRHDFTTFRS 160 R Y Y + P S LD M++A + L+G HDF Sbjct: 254 CKERRYKYFFTNPCFAPVPGSAGTYHTPSSPMREGTLDIAAMQLACESLIGLHDFRNMCK 313 Query: 161 IHC--QASSPIRTIDHFDVNS-------------------FGNLIEIRVVARSFLHTQIR 199 I Q ++ R I + + + + +FL Q+R Sbjct: 314 IDASKQLTNFKRRIFYAGIEEVSPLSVPSYLSHGAIAPPDQPKMYAFVLHGSAFLWHQVR 373 Query: 200 SFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 S V L L+G + +++ L + + +A L + Sbjct: 374 SIVAILFLIGQRLEPPSLVQQLLDIETNPTRPKYEMASDAPLVLWDCIFP 423 >gi|327307008|ref|XP_003238195.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] gi|326458451|gb|EGD83904.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] Length = 614 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 97/380 (25%), Gaps = 147/380 (38%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNYTEVPTIEEELWKALRKTRLIFPTHKDCTEEFSGKDNS 151 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI----------------- 74 + + GRTD GV A QV + Sbjct: 152 PSRPYAIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPAEPNPPVELKGGDVVNSVVA 211 Query: 75 -------------------------------LCKALNAYLKISDTISILNLSI-VDKQFH 102 + LN L + I +L + F Sbjct: 212 TESGMGDKNTQSGVSDTGEAKGWDDIADELPYIQILNGAL--PEDIRVLAWCPHLPPDFD 269 Query: 103 ARFSAIRRSYLYRIITRQAPLA-----------------LEKGRAWLIPKSLDCENMRIA 145 ARFS +R Y Y L + R LD E MR A Sbjct: 270 ARFSCRQRRYRYFFTQPAFCPTPGTRGIVRSPELKDDLSLARPREGW----LDIEAMRKA 325 Query: 146 AQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN------------------------- 178 AQ+ VG HDF F + Q ++ +R I D+ Sbjct: 326 AQYFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGPR 385 Query: 179 -------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + G + V +FL QIR VG L LVG G + + + L Sbjct: 386 NTGVPGSINDINSAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVT 445 Query: 226 D--RKECGPLAPPEGLYFDS 243 R+ +A L Sbjct: 446 KNPRRPVYEMASDSPLVLWD 465 >gi|302656723|ref|XP_003020113.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517] gi|291183894|gb|EFE39489.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517] Length = 614 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 97/380 (25%), Gaps = 147/380 (38%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNYTEAPTIEEELWKALRKTHLIFPTHKDCTEEFSGKDNS 151 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI----------------- 74 + + GRTD GV A QV + Sbjct: 152 PSRPYAIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPADPNPPADLEEGDVMDSDVA 211 Query: 75 -------------------------------LCKALNAYLKISDTISILNLSI-VDKQFH 102 + LN L + I +L + F Sbjct: 212 TESGMGDRNTQSGVSDTGEAKGWDDIADELPYIQILNGAL--PEDIRVLAWCPHLPPDFD 269 Query: 103 ARFSAIRRSYLYRIITRQAPLA-----------------LEKGRAWLIPKSLDCENMRIA 145 ARFS +R Y Y L + R LD E MR A Sbjct: 270 ARFSCRQRRYRYFFTQPAFCPTPGARGIVRSSELKDDLSLARLREGW----LDIEAMREA 325 Query: 146 AQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN------------------------- 178 AQ+ VG HDF F + Q ++ +R I D+ Sbjct: 326 AQYFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGPR 385 Query: 179 -------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + G + V +FL QIR VG L LVG G + + + L Sbjct: 386 NTGVPESIDDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVT 445 Query: 226 D--RKECGPLAPPEGLYFDS 243 R+ +A L Sbjct: 446 KNPRRPVYEMASDSPLVLWD 465 >gi|189193015|ref|XP_001932846.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978410|gb|EDU45036.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 599 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 66/360 (18%), Positives = 94/360 (26%), Gaps = 118/360 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---------------------- 37 + Y G Y G++ KN +I+ + KA+ Sbjct: 80 IALKFAYLGQKYNGFEHHKNNTTPLPTIEEELWKALVKTRLITPIPTAGGETESYERIDR 139 Query: 38 ------------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI----------- 74 V + GRTD GV A QV + Sbjct: 140 KTFARWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKAPQSPEETPET 199 Query: 75 -----------------------------LCKALNAYLKISDTISILNLSIVDK-QFHAR 104 + LN L I + F AR Sbjct: 200 NEEESPPSSPSSDSKPPPKPFNDLTDELPYIQLLNRVL--PPDIRVYAWCPNPPADFSAR 257 Query: 105 FSAIRRSYLYRIITRQ-APLALEKGRAWLIPKS--------LDCENMRIAAQHLVGRHDF 155 FS R Y Y AP+ GR LD M+ HLVG HDF Sbjct: 258 FSCKERRYKYFFTNPCFAPVPGSSGRYNTSSTPPQAMREGWLDINAMKQGCAHLVGLHDF 317 Query: 156 TTFRSIHC--QASSPIRTIDHFDVNSF------------------------GNLIEIRVV 189 F I Q ++ R I H D+ L + Sbjct: 318 RNFCKIDASKQLTNFQRRIFHADIEEVSPLSVPAFLSHPALTAPGLPASEAPKLYSFTLH 377 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 +FL Q+RS + L L+G G + + + L +A + +A L + Sbjct: 378 GSAFLWHQVRSLIAVLFLIGQGLESPDIIPQLLDIEANPTRPKYEMASDAPLVLWDCIFP 437 >gi|167967303|ref|ZP_02549580.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] Length = 243 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 2/136 (1%) Query: 113 LYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 +YR+ T + + P+ LD + M A++ L+G HDF F H + ++ IR Sbjct: 1 MYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFCR-HREGATTIRD 59 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + D + G L+ V A +F + +RS VG+L VG+ + +T + L A R Sbjct: 60 LQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDF 119 Query: 232 PLAPPEGLYFDSVEYS 247 +AP GL V+Y Sbjct: 120 AVAPAHGLTLIQVDYP 135 >gi|195382396|ref|XP_002049916.1| GJ20484 [Drosophila virilis] gi|194144713|gb|EDW61109.1| GJ20484 [Drosophila virilis] Length = 509 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 88/252 (34%), Gaps = 50/252 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ +I+ + +A+ H GRTD V A Sbjct: 100 VLIKVMYFGWDYQGFACQEDSMDTIEAYLFRALIRTCLIESRATSNYHRCGRTDKEVSAF 159 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + + ARF Sbjct: 160 CQVISIDLRSKHAPDVQMEPEALSSEIDYCSLLNRVL--PKNIQCVSWMPLRNPAYSARF 217 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 I R+Y Y + LD E MRIA Q LV DF F +H Sbjct: 218 DCISRTYRY----------------YFPKGDLDIEAMRIACQSLVCHGDFRNFCKMDVHN 261 Query: 164 QASSPIRTIDHFDVNSFGN------------LIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 ++ +R + + N + + + +FL QIR + L LVG Sbjct: 262 GVTNYMRNLQGAAIKPCDNTDIQMHSNSGYAMYYLEIQGNAFLWHQIRCIMAVLLLVGQK 321 Query: 212 KWTSTDLEKALQ 223 + K L Sbjct: 322 HEQPCVISKLLD 333 >gi|307211854|gb|EFN87801.1| tRNA pseudouridine synthase A [Harpegnathos saltator] Length = 270 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 44/243 (18%) Query: 22 KNGSSIQGSIEKAIFLVTGEIV---VVHGAGRTDSGVHALRQVAHFDLVREW----VPVI 74 ++G ++QG++E A+ + + ++ + RTD+GVHAL H +L ++ Sbjct: 2 RDGDTVQGALEAALLNILPKTTIRPNIYLSSRTDAGVHALCNAGHVELENKYNVLYKDDN 61 Query: 75 LCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP-----LALEKG 128 + +N Y TI +L + V FHAR S R+Y+YR + + P ++ Sbjct: 62 IKAFVNRYFNKCGHTIRLLEFTPVTNDFHARGSCKSRTYIYRFMIPKVPGEQRIPLVDAP 121 Query: 129 RAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 +L+ D + ++ Q +G DFTTF S+ S R I++ Sbjct: 122 HTYLVKAHDFDVDRVKCGTQLFMGVKDFTTFSSM----SITNRKIEY------------- 164 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSV 244 +R VG+L +G K T D+ LQ P AP GL+ ++ Sbjct: 165 ----------VRRMVGALISLGLRKITEKDINVMLQVPSHHNWNPRASSAPANGLHLVNL 214 Query: 245 EYS 247 EY Sbjct: 215 EYD 217 >gi|168049023|ref|XP_001776964.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671665|gb|EDQ58213.1| predicted protein [Physcomitrella patens subsp. patens] Length = 680 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 75/211 (35%), Gaps = 16/211 (7%) Query: 46 HGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 H R + ++ F LN L + I +L V F+ARF Sbjct: 350 HSGDRVAMARASRKEEEQFARTAYEDEYDYVGILNRAL--PEDIRVLGWCPVPPGFNARF 407 Query: 106 SAIRRSYLYR-IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC- 163 S + R Y Y I A+ ++ M+ A + G HDFT F + Sbjct: 408 SCMYREYKYFFIDDGLNIDVWTLIYAFNRQYNV----MKFACKQFEGEHDFTNFCKMDAA 463 Query: 164 QASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + +RTI HFD+ + + V +FL Q+R L +VG G T Sbjct: 464 NVHNYMRTITHFDIIPSNEKWGGKSVWIMNVKGTAFLWHQVRCMAAVLFMVGAGHEKPTI 523 Query: 218 LEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 +E+ L + RK +A L Y Sbjct: 524 VEELLDVKKIVRKPQYIMASETPLLLFHCGY 554 >gi|317027085|ref|XP_001400055.2| pseudouridylate synthase 3 [Aspergillus niger CBS 513.88] Length = 608 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 67/363 (18%), Positives = 96/363 (26%), Gaps = 122/363 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 109 IALKFAYLGQRYNGL-EHANGNATPLPTIEEEMYKALRKTRLIFPTDTTGDEFVESYAPR 167 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP------------------- 72 + + AGRTD GV A QV + Sbjct: 168 ETKPYYINWDGCEYSKAGRTDRGVSAFGQVIGIRVRSARPKRDEVVQSDENADTTMQNTD 227 Query: 73 --------------VILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLYRII 117 L + + I +L + F ARFS R Y Y Sbjct: 228 EANASVDDGWDDIKDELPYVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCGERHYKYFF- 286 Query: 118 TRQAPLALEKGRAWLIPKS------------LDCENMRIAAQHLVGRHDFTTFRSIH--C 163 T+ A G + +P+ LD E MR AA++ G HDF F + Sbjct: 287 TQPAFSP-TPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNFCKLDVTK 345 Query: 164 QASSPIRTIDHFDVN-------------------------------------SFGNLIEI 186 Q S R I D+ + + Sbjct: 346 QIESFYRDIFRADIELLDARTNPLGYVTQPEFQARPASGADESAESSAAPLPTAAQVYVF 405 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSV 244 + +FL Q+R V L LVG G + ++ L RK +A L Sbjct: 406 HLEGSAFLWHQVRHMVNVLFLVGQGLEEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDC 465 Query: 245 EYS 247 Y Sbjct: 466 IYP 468 >gi|297619849|ref|YP_003707954.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing protein [Methanococcus voltae A3] gi|297378826|gb|ADI36981.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Methanococcus voltae A3] Length = 271 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 29/247 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHALRQ 60 Y + Y+G Y +Q Q + ++ + + ++ ++ GRTD GV AL Sbjct: 2 YIFKVAYDG-RYS-FQLQPHEKTVCDILTNILVDCGYLSEFKKPLYYGGRTDLGVSALGN 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +DL +E + + + I +L +++ + + R Y Y + Sbjct: 60 FVIYDLDKEPILTHIYSKCKGF-----GIWVLGYQKINEFPNVEY----RHYRYILPKVD 110 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNS 179 A D + ++ ++ L+G H F + P+RTI V Sbjct: 111 AYGNFH-----------DMDKIKKVSECLIGTHSFHNLSKRDKTKNRDPVRTIYDITVED 159 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGPLAPP 236 I + + +SFL +R +G + VG + T+ ++E+ + K P++ Sbjct: 160 NEYFITLNIYGKSFLWNMVRKIIGLISNVGISEMTNEEIEEYMDKVFNPSIKVGSPISSA 219 Query: 237 EGLYFDS 243 EGL Sbjct: 220 EGLVLVE 226 >gi|296412959|ref|XP_002836186.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629994|emb|CAZ80377.1| unnamed protein product [Tuber melanosporum] Length = 454 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 28/260 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 + ++I Y G+GY G Q SI+ + +A + + RTD Sbjct: 92 KVAVLIGYCGTGYRGMQLNPPHKSIESDLFEAFVQAGAISKANSDDPKKSSLVRCARTDK 151 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N+YL + I + + F + R Y Sbjct: 152 GVHAAGNVISLKL--IIEDPDITEKINSYL--PEQIRVWGIVRTVGSFSSYHQCDSRRYE 207 Query: 114 YRIITRQAPLALEKGR----AWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASS 167 Y + + K + I PK L + +R + G H+F F S Sbjct: 208 YLVPSHCFIPPHPKSYLAKKTYRISPKRL--QRVREGFRSYEGTHNFHNFTIQKTFNDPS 265 Query: 168 PIRTIDHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 R I F+V + + +RV +SF+ QIR VG + +V +++ Sbjct: 266 SKRFIKSFEVLDPIIINNTEWLSLRVHGQSFMMHQIRKMVGMVMMVVRTGCPLERIKE-- 323 Query: 223 QAQDRKECGPLAPPEGLYFD 242 R P AP GL + Sbjct: 324 ACGPRVVSIPKAPSLGLLLE 343 >gi|2160170|gb|AAB60733.1| F21M12.19 gene product [Arabidopsis thaliana] Length = 250 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 55/201 (27%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G ++ D+GVHAL V Sbjct: 55 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQ-------------------DAGVHALSNV 95 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSA-- 107 H D+ R P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 96 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 155 Query: 108 ---------------------IRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIA 145 Y YR+++ P LEK R W +P+ L+ M+ A Sbjct: 156 RTVLGYDLKVYSLQLEIENLFTHCRYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEA 215 Query: 146 AQHLVGRHDFTTFRSIHCQAS 166 + LVG HDF++FR+ CQ Sbjct: 216 CRVLVGSHDFSSFRAAGCQVK 236 >gi|47208274|emb|CAF91572.1| unnamed protein product [Tetraodon nigroviridis] Length = 375 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 26/235 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAGR 50 + +++ Y+G GY+G QR +I+ + A+ + + R Sbjct: 76 KVALLLAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPENHAEDMKKMSFQRCAR 135 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GV A QV L W+ L + +N +L I +L + V + F+++ + R Sbjct: 136 TDKGVSAAGQVVSLKL---WLIDDLAEKINQHL--PPQIRVLGVKRVTQGFNSKNNCDAR 190 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL---VGRHDFTTFRSIH-CQAS 166 +Y Y + T + L E ++ + G H+F F S Sbjct: 191 TYAYMLPTVAFAPKDSDAASDAASFRLQPETLQRVNRLFALYKGTHNFHNFTSQKAPNDP 250 Query: 167 SPIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 S R + H I V +SF+ QIR +G + V G Sbjct: 251 SARRYVTHVCCGEPFMGGDTEFAVITVRGQSFMLHQIRKMIGLVIAVVKGYAREE 305 >gi|296824052|ref|XP_002850540.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480] gi|238838094|gb|EEQ27756.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480] Length = 614 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 98/380 (25%), Gaps = 147/380 (38%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL----------------VTGEI 42 + Y G Y G NG +I+ + KA+ V Sbjct: 93 IALKFAYLGKRYNGL-EHANGNFTEVPTIEEELWKALRKTRLIFPTHKDCIDDFAVPSRP 151 Query: 43 VVVH-------GAGRTDSGVHALRQVAHFD------------------------------ 65 +H GRTD GV A QV Sbjct: 152 QSIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLKPAAPSLAAEGKGKRTTGSAAAAVSE 211 Query: 66 ----------------------LVREWVPVILCKALNAYLKISDTISILNLSI-VDKQFH 102 + + LN L D I +L F Sbjct: 212 PGDENILGSFDVSDKEEAKAPVWDDIADELPYIQILNGAL--PDDIRVLAWCPHPPPDFD 269 Query: 103 ARFSAIRRSYLYRIITRQAPLA-----------------LEKGRAWLIPKSLDCENMRIA 145 ARFS +R Y Y A L K R LD E MR A Sbjct: 270 ARFSCRQRRYRYFFTQPAFCPAPGARGIVRAPELKQDLSLPKLREGW----LDIEAMREA 325 Query: 146 AQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDV------------------NSFGN--- 182 AQH VG HDF F + Q ++ +R I D+ F N Sbjct: 326 AQHFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQKTPLGFVQMPGFEQFDNSPR 385 Query: 183 -----------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + V +FL QIR VG L LVG G + + + L Sbjct: 386 NTGVSESVSDTSPAAAKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEPPSIVPQLLDVT 445 Query: 226 D--RKECGPLAPPEGLYFDS 243 R+ +A L Sbjct: 446 KNPRRPVYEMASDSPLVLWD 465 >gi|11464733|gb|AAG35307.1| pseudouridine synthase 1 [Mus musculus] Length = 411 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 97/285 (34%), Gaps = 48/285 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDS------------------GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 RTD GV A QV + W+ + +N++L I I Sbjct: 110 RTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRI 164 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQH 148 L L V F+++ R+Y Y + T A + L E ++ Sbjct: 165 LGLKRVTGGFNSKNKCDARTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLAC 222 Query: 149 LVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFV 202 G H+F F S + S R I I+V +SF+ QIR V Sbjct: 223 YKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMV 282 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G + + G + LE++ + K P AP GL + V + Sbjct: 283 GLVVAIVKGYAPESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 325 >gi|260817697|ref|XP_002603722.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae] gi|229289044|gb|EEN59733.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae] Length = 352 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 22/261 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++ Y+G GY G QR + +I+ + A + + + RTD Sbjct: 42 RKVACLLAYSGVGYMGMQRNQGFKTIEEDLLAAFYKAGAIPKDHMDCMQKMHFQRCARTD 101 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A Q+ + ++ + +N L ++I ++ + F ++ + R+Y Sbjct: 102 KGVSAAGQIVSL---KMYMIEDAVQKINDCLA--ESIRLIGIKRTTNGFDSKNACDARTY 156 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRT 171 +Y + T E+ E + G H+F F S + S R Sbjct: 157 MYVLPTYSFAPTKEETEQDFRATDDVMEKVNDVLSAYKGTHNFHNFTSGKKFKDPSAKRY 216 Query: 172 IDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 I V I + +SF+ QIR +G + + G + LE+A Q Sbjct: 217 IIESKCLDTFVRDDIEWTVISIKGQSFMIHQIRKMIGMMLAIVRGLAPRSMLERAWQEG- 275 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 K P AP GL D V + Sbjct: 276 -KCDIPKAPGLGLVLDKVHFD 295 >gi|194696534|gb|ACF82351.1| unknown [Zea mays] Length = 257 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 68/187 (36%), Gaps = 27/187 (14%) Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 + K LN L I +L V FHARF+ + R Y Y Sbjct: 5 RSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFTCLSREYKYLFW------------ 50 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS------FGN 182 LD M+ AA +G HDF F + S+ R I F +++ Sbjct: 51 ----KGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDE 106 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLY 240 L + + +FL Q+R V L L+G G + + ++ L RK +AP L Sbjct: 107 LCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLI 166 Query: 241 FDSVEYS 247 S + Sbjct: 167 LQSCLFD 173 >gi|148688057|gb|EDL20004.1| pseudouridine synthase 1, isoform CRA_b [Mus musculus] Length = 452 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 97/285 (34%), Gaps = 48/285 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 91 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 150 Query: 50 RTDS------------------GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 RTD GV A QV + W+ + +N++L I I Sbjct: 151 RTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRI 205 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQH 148 L L V F+++ R+Y Y + T A + L E ++ Sbjct: 206 LGLKRVTGGFNSKNKCDARTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLAC 263 Query: 149 LVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFV 202 G H+F F S + S R I I+V +SF+ QIR V Sbjct: 264 YKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMV 323 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G + + G + LE++ + K P AP GL + V + Sbjct: 324 GLVVAIVKGYAPESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 366 >gi|67481869|ref|XP_656284.1| tRNA pseudouridine synthase [Entamoeba histolytica HM-1:IMSS] gi|56473473|gb|EAL50898.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS] Length = 401 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 103/268 (38%), Gaps = 30/268 (11%) Query: 4 YCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 +I Y G GYFG N +I+G IE A++ + V RTD Sbjct: 43 VAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDK 102 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A + + + + +N++L +TI I ++ V F+A+ R+Y Sbjct: 103 GVSAANNLISL---KMGLDGNYIERINSFL--PETIRIQDVVKVSHSFNAKTRVDSRTYE 157 Query: 114 YRIIT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----RSIHCQAS 166 Y + ++ + P+ D + + V H+F + + + Sbjct: 158 YIFPSYAIQKIDSEHPEINVEYNPQQEDIDYFNSVISNYVKTHNFQNYTFNTKETKADSK 217 Query: 167 SPIRTIDHFD---VNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 S R I V G N+I + + +SF+ QIR +G ++ + + + + + Sbjct: 218 SNNRYIISMSAQLVQRNGLNVIAVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQMNEIM 277 Query: 223 QAQ----DRKECGPLAPPEGLYFDSVEY 246 + + + P AP GL+ D + Sbjct: 278 KTSFTLINWRSVIPTAPAHGLFLDQCHF 305 >gi|167383737|ref|XP_001736651.1| tRNA pseudouridine synthase A [Entamoeba dispar SAW760] gi|165900832|gb|EDR27064.1| tRNA pseudouridine synthase A, putative [Entamoeba dispar SAW760] Length = 403 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 103/268 (38%), Gaps = 30/268 (11%) Query: 4 YCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 +I Y G GYFG N +I+G IE A++ + V RTD Sbjct: 45 VAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDK 104 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A + + + + +N++L +TI I ++ V F+A+ R+Y Sbjct: 105 GVSAANNLISL---KMGLDGNYIERINSFL--PETIRIQDVVKVSHSFNAKTRVDSRTYE 159 Query: 114 YRIIT---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----RSIHCQAS 166 Y + ++ + P+ D + + V H+F + + + Sbjct: 160 YIFPSYAIQKIDSEHPEINVEYNPQQEDVDYFNSVISNYVKTHNFQNYTFNTKETKADSK 219 Query: 167 SPIRTIDHFD---VNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 S R I V G N+I + + +SF+ QIR +G ++ + + + + + Sbjct: 220 SNNRYIISMSAQLVQRNGLNVIAVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQMNEIM 279 Query: 223 QAQ----DRKECGPLAPPEGLYFDSVEY 246 + + + P AP GL+ D + Sbjct: 280 KTSFTLINWRSVIPTAPAHGLFLDQCHF 307 >gi|70906468|ref|NP_001020732.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Mus musculus] Length = 441 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 97/285 (34%), Gaps = 48/285 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDS------------------GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 RTD GV A QV + W+ + +N++L I I Sbjct: 140 RTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRI 194 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI---AAQH 148 L L V F+++ R+Y Y + T A + L E ++ Sbjct: 195 LGLKRVTGGFNSKNKCDARTYCYMLPT--FAFAHKDRDVQDESYRLSAETLQQVNRLLAC 252 Query: 149 LVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFV 202 G H+F F S + S R I I+V +SF+ QIR V Sbjct: 253 YKGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMV 312 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G + + G + LE++ + K P AP GL + V + Sbjct: 313 GLVVAIVKGYAPESVLERSW--GEEKVDVPKAPGLGLVLERVHFE 355 >gi|294949997|ref|XP_002786409.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC 50983] gi|239900701|gb|EER18205.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC 50983] Length = 427 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 102/282 (36%), Gaps = 53/282 (18%) Query: 5 CMIIEYNGSGYFGWQRQKNGS------SIQGSIEKAIF---------LVTGEIVVVHGAG 49 + + Y+G G G Q Q N +I+G +KA+ L + + A Sbjct: 76 LVALGYSGEGLKGMQIQTNEKGEEIHSTIEGIFQKALLATNLSTEEILADKKKLKFSRAA 135 Query: 50 RTDSGVHALRQVAHFDLV------------------REWVPVILCKALNAYLKISDTISI 91 RTD GVHA + L + KALN +L+ + + Sbjct: 136 RTDKGVHAALNILALALPVTLDKTLPQGEGDATRNVWTFDEKKNVKALNDFLE-PLNMQV 194 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + V +F AR RR Y Y + + + D + VG Sbjct: 195 FGIQRVSNKFDARKQCERRRYEYLLPE------------FALDGKADAAKLEEVMSQYVG 242 Query: 152 R-HDFTTFR-SIHCQASSPIRTIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSL 205 + +F F I + S R I I I++V +SFL QIR +G Sbjct: 243 KNKNFFNFTAKIPAEDPSAKRHIISITCQPTEIDANTFIRIQLVGQSFLLHQIRKMIGLA 302 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V G +E+ L A++RK LAP EGL+ D V + Sbjct: 303 VEVCRGSAPEGAIEECLAAKERKHI-HLAPAEGLFLDRVYFD 343 >gi|225463117|ref|XP_002264487.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1520 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 70/185 (37%), Gaps = 27/185 (14%) Query: 72 PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + + LN L I ++ V FHARFS + R Y Y Sbjct: 1268 EIDYMRVLNRVL--PKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRG------------ 1313 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFGN------LI 184 +L+ M A + VG HDF F + + R I F++ N L Sbjct: 1314 ----NLNILAMESAGKKFVGEHDFRNFCKMDAVNVHNYRRHIISFEIAPTNNRYDGNQLW 1369 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFD 242 I++ +FL Q+R V L ++G G + ++ L + RK +AP L + Sbjct: 1370 AIKIKGSAFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIPLVLE 1429 Query: 243 SVEYS 247 S E+ Sbjct: 1430 SCEFE 1434 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 8/100 (8%) Query: 3 RY-CMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGV 55 RY + + Y G ++G+ + + +++ I KA+ + + GRTD GV Sbjct: 81 RYVALKVMYFGPRFYGFASEAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKGV 140 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLS 95 ++ QV L + + N+ + + + +L Sbjct: 141 SSVGQVIALFLRSNLKEIG-AREENSKEVVPEEQYVRDLE 179 >gi|238489663|ref|XP_002376069.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357] gi|220698457|gb|EED54797.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357] Length = 656 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 68/371 (18%), Positives = 95/371 (25%), Gaps = 132/371 (35%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 150 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEEMWKALRKTRLIFPENGEADGFEDTRGPR 208 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV-------------------- 71 + E AGRTD GV A QV + Sbjct: 209 ELKPYLINWEGCQYSKAGRTDRGVSAFGQVIGLRVRSARPKRDDVAQADPSSDTTMQTGE 268 Query: 72 ----------------PVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLY 114 L + + I +L + F ARFS R Y Y Sbjct: 269 EASALDDAAQDNWDDIADELPYVSILNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYKY 328 Query: 115 RII-----------------TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 +A + K R LD E MR AA++ G HDF Sbjct: 329 FFTQPAFSPTPGPLGFTSRANNKAGDSRAKYREGW----LDIEAMREAAKYFEGVHDFRN 384 Query: 158 FRSIHC--QASSPIRTIDHFDVN------------------------------------- 178 F + Q + R I H D+ Sbjct: 385 FCKLDTSKQIENFERVIYHSDIELLDPRSSPLGYVSQPGFQALEDPAAQQTPGSPESPSP 444 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPP 236 + + + +FL Q+R VG L LVG G T + L RK +A Sbjct: 445 TPSQVYVFNLRGSAFLWHQVRHMVGILFLVGQGLEPPTIVPDLLDITKNPRKPTYEMASD 504 Query: 237 EGLYFDSVEYS 247 L + + Sbjct: 505 APLVLWNCVFP 515 >gi|296187337|ref|ZP_06855732.1| tRNA pseudouridine synthase A domain protein [Clostridium carboxidivorans P7] gi|296047859|gb|EFG87298.1| tRNA pseudouridine synthase A domain protein [Clostridium carboxidivorans P7] Length = 120 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 7/115 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M M+I+Y+GS Y GWQ+Q + S+IQ IE + +TGE + V G GRTD+GV Sbjct: 1 MRNLKMLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HA VA+F + K L Y + + I + +L ++FHAR++A + Sbjct: 61 HAENYVANFHTDSILTVEDMLKYL--YEFLPEDIVVKSLRDTSERFHARYNAKYK 113 >gi|253744705|gb|EET00865.1| Pseudouridylate synthase, putative [Giardia intestinalis ATCC 50581] Length = 507 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 95/323 (29%), Gaps = 95/323 (29%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIF-------LVTGEIVVVHGAGRTDSGV 55 + + Y+G+ Y G +Q N +I+ + A+ T + +GRTD GV Sbjct: 72 IAIQVCYDGTEYAGLAQQSNKEYTIEELLLNALRDAALIPQHATANDIHFERSGRTDRGV 131 Query: 56 HALRQVAHFD--------LVREWVPVILCKALNA-------------------------- 81 A QV F R + Sbjct: 132 IAAGQVFSFYARTNNKEITPRPIPAPDPRFYRDRRDGMAPPTKPNDNFDETRGGDTVSVG 191 Query: 82 --------------------YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +++ +TI +L + VD+ F AR S R Y+Y Sbjct: 192 KEPELKQVPQEVEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYIYTFGQV-- 249 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNSF 180 SL+ + M A LVG HDF + R I + Sbjct: 250 -------------GSLNIQRMAEACTTLVGFHDFRNICKPSLDNVKTFERVIFSCQLEID 296 Query: 181 GNLIEIR---------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 G E V +FL+ Q+R L +G + + L Sbjct: 297 GQPYECEGSRAAVSEDSSLSLVVCGSAFLYHQVRCIASLLLHIGAELEPPSIISDLLDVT 356 Query: 226 DR--KECGPLAPPEGLYFDSVEY 246 K P+AP E L F+ EY Sbjct: 357 RFPGKPDYPIAPGELLIFEKAEY 379 >gi|313223412|emb|CBY40401.1| unnamed protein product [Oikopleura dioica] Length = 307 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 29/233 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------------GEIVVVHGAG 49 + ++I Y G Y G Q + +IEK +F + Sbjct: 82 KVAILISYCGKNYHGLQHNPGDDKV-DTIEKRVFQALVAAKVVYSNVINDRKKCAYQSCS 140 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A+ VA + +P LC+ +NA+L D I + + V K F A+ Sbjct: 141 RTDKGVSAIGNVASL---KCKIPKNLCELVNAHL--PDDIRLTSFEQVTKGFCAKKRCTH 195 Query: 110 RSYLYRIITRQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-S 166 R+Y Y T ++ ++ I E +R + +G + F S Q Sbjct: 196 RTYSYYCPTICFGSKEDWDRPSSFRISAE-KLEGVRELLKKYIGTRSYHNFTSGKRQGDE 254 Query: 167 SPIRTIDHFDVN------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S R I F + + +E+RVV +SF+ QIR VG + W Sbjct: 255 SAKRHILDFRIQGDPFICNEWEYVELRVVGQSFMIHQIRKMVGLIIARAGNHW 307 >gi|119490947|ref|XP_001263134.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181] gi|119411294|gb|EAW21237.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181] Length = 610 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 74/360 (20%), Positives = 99/360 (27%), Gaps = 123/360 (34%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 116 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPREL 174 Query: 38 ----VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA--------------- 78 ++ E AGRTD GV A QV + +A Sbjct: 175 KPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAEATSDVEMTSGAHADDT 234 Query: 79 -------------LNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQA 121 LN L D I IL F ARFS R Y Y Sbjct: 235 WDDIADEIPYISMLNRVL--PDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPT 292 Query: 122 PLAL--------EKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIR 170 P L +K + + + LD + MR AA++ G HDF F + Q + R Sbjct: 293 PGPLGFAMRGSGDKNASAQLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFER 352 Query: 171 TIDHF-------------DVNSFG------------------------NLIEIRVVARSF 193 I H VN G + + +F Sbjct: 353 IIYHAGIELLDPKNHPLGYVNQPGFQALQDAPAGTDAESGTITNSAAAKVYVFNLHGSAF 412 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL------APPEGLYFDSVEYS 247 L Q+R V L LVG G T + L + C P AP L + Sbjct: 413 LWHQVRHMVSILFLVGQGLEPPTIVRDLLDV-SKNPCKPTYEMASDAP---LVLWDCIFP 468 >gi|195026984|ref|XP_001986382.1| GH21331 [Drosophila grimshawi] gi|193902382|gb|EDW01249.1| GH21331 [Drosophila grimshawi] Length = 503 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 89/257 (34%), Gaps = 58/257 (22%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--------HGAGRTDSGV 55 + + Y G Y G+ Q++ + +IE +F ++ H GRTD V Sbjct: 99 VLLKVMYFGWDYQGFACQEDSN---ETIEAFLFRALIRTCLIESRATSNYHRCGRTDKEV 155 Query: 56 HALRQVAHFDLVREWVPV------------ILCKALNAYLKISDTI-SILNLSIVDKQFH 102 A QV DL + P C LN L I + + + + + Sbjct: 156 SAFCQVISIDLRSKHAPDVQLESDSLATEIDYCSLLNRVL--PKNIQCVSWMPLRNHVYS 213 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-- 160 ARF I R+Y Y + LD E MR+A +V DF F Sbjct: 214 ARFDCISRTYRY----------------YFPKGDLDIEAMRMACDLIVCHGDFRNFCKMD 257 Query: 161 IHCQASSPIRTIDHFDVNSFGN--------------LIEIRVVARSFLHTQIRSFVGSLK 206 +H ++ +R + + + + + + A +FL QIR + L Sbjct: 258 VHNGVTNYMRNLQAARIQACEGTAVEVENDLNSGYTMYYLEIQANAFLWHQIRCIMAVLL 317 Query: 207 LVGDGKWTSTDLEKALQ 223 LVG + K L Sbjct: 318 LVGQKHEEPVIISKLLD 334 >gi|308161029|gb|EFO63491.1| Pseudouridylate synthase, putative [Giardia lamblia P15] Length = 515 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 97/319 (30%), Gaps = 91/319 (28%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV-------TGEIVVVHGAGRTDSGV 55 + + Y+G+ Y G +Q N +I+ + A+ T V +GRTD GV Sbjct: 83 IAIQVCYDGTEYAGLAQQPNKEYTIEELLLNALRDAALIPQYATASDVHFERSGRTDRGV 142 Query: 56 HALRQVAHF--------DLVREWVPVILCKALNA-------------------------- 81 A QV F + + Sbjct: 143 SAAGQVFSFYARTNNKAMTPQSIPVPDPRFYRDRRDGLTPPAKPNDNVDGDLVNSEKEPE 202 Query: 82 ----------------YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +++ +TI +L + VD+ F AR S R Y+Y Sbjct: 203 LKQVPQEQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRHYIYTFGQI------ 256 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFGNLI 184 SL+ M A LVG HDF + + R I + G Sbjct: 257 ---------GSLNIRRMAEACTKLVGFHDFRNICKPSLDSIKTFERVIFSCYLEIDGQPY 307 Query: 185 EIR---------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-- 227 E V +FL+ QIR L +G + + L ++ Sbjct: 308 ECENDRMVIKENSSLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNIENFPG 367 Query: 228 KECGPLAPPEGLYFDSVEY 246 K P+AP E L F+ EY Sbjct: 368 KPDYPIAPGELLLFEKAEY 386 >gi|317137489|ref|XP_003190065.1| pseudouridylate synthase 3 [Aspergillus oryzae RIB40] Length = 617 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 68/371 (18%), Positives = 95/371 (25%), Gaps = 132/371 (35%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 111 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEEMWKALRKTRLIFPENGEADGFEDTRGPR 169 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV-------------------- 71 + E AGRTD GV A QV + Sbjct: 170 ELKPYLINWEGYQYSKAGRTDRGVSAFGQVIGLRVRSARPKRDDVAQADPSSDTTMQTGE 229 Query: 72 ----------------PVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLY 114 L + + I +L + F ARFS R Y Y Sbjct: 230 EASALDDTAQDNWDDIADELPYVSILNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYKY 289 Query: 115 RII-----------------TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 +A + K R LD E MR AA++ G HDF Sbjct: 290 FFTQPAFSPTPGPLGFTSRANNKAGDSRAKYREGW----LDIEAMREAAKYFEGVHDFRN 345 Query: 158 FRSIHC--QASSPIRTIDHFDVN------------------------------------- 178 F + Q + R I H D+ Sbjct: 346 FCKLDTSKQIENFERVIYHSDIELLDPRSSPLGYVSQPGFQALEDPAAQQTPGSPESPSP 405 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPP 236 + + + +FL Q+R VG L LVG G T + L RK +A Sbjct: 406 TPSQVYVFNLRGSAFLWHQVRHMVGILFLVGQGLEPPTIVPDLLDITKNPRKPTYEMASD 465 Query: 237 EGLYFDSVEYS 247 L + + Sbjct: 466 APLVLWNCVFP 476 >gi|71021049|ref|XP_760755.1| hypothetical protein UM04608.1 [Ustilago maydis 521] gi|46100185|gb|EAK85418.1| hypothetical protein UM04608.1 [Ustilago maydis 521] Length = 913 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 103/324 (31%), Gaps = 94/324 (29%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--------NGSSIQGSIEKAIFLVTGEIVVV-------H 46 + + Y+G+GY G Q + +++G + A+ + Sbjct: 129 RKIALRFSYDGAGYSGLAAQNTTVPGSGSSLPTVEGVLWDALCTARLVDPALGMDGAGFS 188 Query: 47 GAGRTDSGVHALRQVAHFDLVR----EWVP------------------------VILCKA 78 GRTD GV A QV + +W L + Sbjct: 189 RCGRTDRGVSAAGQVVALWVRSKKLNQWPDRLEHQEQFSPLASSLLSKPSPQEWDDLQEK 248 Query: 79 LNAYLK-------------ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 NA L+ + +I I S V F +RF + R Y Y L Sbjct: 249 RNAKLEGTELPYVQILNRILPSSIRIQAWSPVRSNFSSRFDCVYRHYKYFFPAGPPRLFY 308 Query: 126 EK--------GRAWLI-------PKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSP 168 + G A+ + LD MR AA+ L+G HDF I Q ++ Sbjct: 309 PRSKTINGEDGVAFSVGGGQDAGATRLDIALMRDAARRLLGEHDFRNLCKIDASKQITNY 368 Query: 169 IRTIDHFDVNS---------------------FGNLIEIRVVARSFLHTQIRSFVGSLKL 207 R ID ++ ++ + + +FL+ Q+R+ + L L Sbjct: 369 RRRIDGVSIDRVSSHWPSKNDGVEDDDGGEEGEEHMYVLNLRGTAFLYHQVRNIMAILFL 428 Query: 208 VGDGKWTSTDLEKALQAQDRKECG 231 VG + +E+ + + + Sbjct: 429 VGARLEPPSVIEELMNTESGRIAA 452 >gi|154276726|ref|XP_001539208.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150414281|gb|EDN09646.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 555 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 101/333 (30%), Gaps = 90/333 (27%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGV 55 + Y G Y G+ NG +I+ + KA+ + + V G T+ Sbjct: 92 IALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGVSSTEPST 150 Query: 56 H----ALRQVA-------------HFDLVREWVPVI--LCKALNAYLKISDTISILNLSI 96 A + + W + L + + I +L Sbjct: 151 ATSTDAYNSGVENLLGGLSLSGSENSETEDSWDDIADELPYITILNRVLPEDIRVLAWCP 210 Query: 97 -VDKQFHARFSAIRRSYLYRIIT---RQAPLAL---EKGRAWLI-------PKS------ 136 F ARFS R Y Y P L ++GR P + Sbjct: 211 NPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLGEGSGAPHNEQFREG 270 Query: 137 -LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN--------------- 178 LD E MR A++L+G HDF F + Q ++ +R I H D+ Sbjct: 271 WLDIEAMRKGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLDPKTKPLSYLRQH 330 Query: 179 ----------------SFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 S G+ + I + +FL Q+R L LVG G + Sbjct: 331 EFTTFDTENDKAAANGSIGDPSSNLKVYSITIHGSAFLWHQVRHLAAILFLVGQGLEAPS 390 Query: 217 DLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 + + L + R+ +A L + Sbjct: 391 IIPELLDVEKHPRRPTYEIASDTPLVLWDCIFP 423 >gi|207345339|gb|EDZ72195.1| YGL063Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 330 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 99/311 (31%), Gaps = 79/311 (25%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F V + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY-- 114 A+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 61 AMLNLLSLKITLREDTVA---KLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYLI 115 Query: 115 --RIITRQAPLALEKGRAWLIPKS------LD--------------CENMRIAAQHL--- 149 I+ +L + D ++ AQ L Sbjct: 116 PEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQKLSES 175 Query: 150 -----------------------------------VGRHDFTTFRSIH-CQASSPIRTID 173 VG H+F F + S R I Sbjct: 176 DPLVQDYVGLLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIK 235 Query: 174 HFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V+ I +R+ +SF+ QIR V L + + A RK P Sbjct: 236 KVVVSQASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYI-P 294 Query: 233 LAPPEGLYFDS 243 AP +GL + Sbjct: 295 RAPAQGLLLEG 305 >gi|289742875|gb|ADD20185.1| pseudouridylate synthase [Glossina morsitans morsitans] Length = 444 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 97/276 (35%), Gaps = 52/276 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ ++I+ + KA+ H GRTD V A Sbjct: 57 VLLKFLYFGWDYQGFACQEDSNNTIEFHLFKALTRTCLIESRSSANYHRCGRTDKKVSAF 116 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTISILNLSIVDKQ-FHARF 105 QV DL ++ C +N L I ++ + F ARF Sbjct: 117 CQVISIDLRSKFPEKQQFEESCLEKEIDYCGIMNRVL--PKNIRCISWMPIRNHLFSARF 174 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 I R+Y Y + +L+ M+ A + L DF +H Sbjct: 175 DCITRTYRY----------------FFPKGNLNITAMQDACKLLQRHTDFRNLCKMDVHN 218 Query: 164 QASSPIRTIDHFDV----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 ++ +R I+ +V N + + + A +FL QIR + L L+G K Sbjct: 219 GVTNYVRHIEAANVRLCPHQNESKNKGYAMHYLEIKANAFLWHQIRCIMTVLLLIGQEKE 278 Query: 214 TSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 + + + L ++ C P A L E+ Sbjct: 279 EPSVINELLNV-EKNPCKPQYTPAMGFPLNLYHCEF 313 >gi|258563566|ref|XP_002582528.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237908035|gb|EEP82436.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 615 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 65/382 (17%), Positives = 98/382 (25%), Gaps = 146/382 (38%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G+ NG +I+ + KA+ Sbjct: 98 IALKFAYLGQRYNGY-EHANGNITPLPTIEEELWKALRKARLIFPHIVENSENVDESGSR 156 Query: 38 -------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV------------------- 71 ++ E GRTD GV A QV + Sbjct: 157 SLSRPYSISWEGCDYSKCGRTDRGVSAFGQVVGVRVRSSRPKKTVEPVATPDTSTSVTPK 216 Query: 72 -------------------------------PVILCKALNAYLKISDTISIL-NLSIVDK 99 + + LN L + I IL Sbjct: 217 LISKDVESPFGGLGIDVSELEVEEKWDDVADELPYIQMLNGVL--PEDIRILAWCPRPPP 274 Query: 100 QFHARFSAIRRSYLYRIIT---RQAPLALEKGRAWLIPKS------------LDCENMRI 144 F ARFS R Y Y P L + + LD + MR Sbjct: 275 DFDARFSCRERRYRYFFTQPAFCPTPGPL-----GFVKRPGDTPGSKMREGWLDIDAMRE 329 Query: 145 AAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDV------------------NSFGN-- 182 A+ +G HDF F + Q ++ +R I H D+ + N Sbjct: 330 GAKRYIGSHDFRNFCKVDASKQITNFVRKISHADIQVLDAKNLPPAFLAQQGFQQYENVD 389 Query: 183 ---------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQ 225 + V +FL Q+R V L L+G G + + + L Sbjct: 390 RELRDSSDVQDPALKVYYFSVHGSAFLWHQVRHMVAVLFLIGQGLEPPSIVSQLLDVSTN 449 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 R+ +A L + Sbjct: 450 PRRPTYDIASDAPLVLWDCVFP 471 >gi|302686228|ref|XP_003032794.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8] gi|300106488|gb|EFI97891.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8] Length = 561 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 61/293 (20%), Positives = 98/293 (33%), Gaps = 58/293 (19%) Query: 5 CMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSG 54 ++I + GSGY G Q Q +I+ + A V V + A RTD+G Sbjct: 133 AVLIGFCGSGYNGMQIQKPPAKTIENELFDAFVRVGAVSRDNSDDPVKVGLKRAARTDAG 192 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA + L+ V A ++ I + + V F AR R Y Y Sbjct: 193 VHAAGNLVSLKLITAIPGVPDLVA-RVNEELPPQIRMWGFTRVTNSFEARQMCDSRKYTY 251 Query: 115 RII--------------------TRQAPLA------------------LEKGRAWLIPKS 136 AP+ +++ R W +P Sbjct: 252 FFPSYMLIPPKPGTGNHTNLQQFCEDAPVPALDHPFWQGHTEDDPETEMQRKRLWRLPSD 311 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFD-----VNSFGNLIEIRVVA 190 E +R A+ G H+F F Q S +R + + V I + + Sbjct: 312 -KLEALRRTAEKFEGTHNFHNFTVGRTFQDRSCMRYMKKIEIADPVVYGDTEWIAVTLHG 370 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +SF+ QIR + +L L ++ +++ A R P P GL + Sbjct: 371 QSFMLHQIRKMMSALVLSVRNDTPASVMDELYGA--RTSFIPKMPSLGLLLEH 421 >gi|315055729|ref|XP_003177239.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893] gi|311339085|gb|EFQ98287.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893] Length = 616 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 71/378 (18%), Positives = 98/378 (25%), Gaps = 141/378 (37%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNFTEVPTIEEELWKALRKTRLIFPTHKDCTEEFSGKDSS 151 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI----------------- 74 + + GRTD GV A QV + Sbjct: 152 PSRPYSIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPADSSPPTEANGGDAMDSAVA 211 Query: 75 ---------------------------------LCKALNAYLKISDTISILNLSI-VDKQ 100 + LN L + I +L + Sbjct: 212 VELGTGDENRRSGVPGTGEAKAAVWDDIADELPYIQILNGAL--PEDIRVLAWCPHLPAD 269 Query: 101 FHARFSAIRRSYLYRIITRQA-PLALEKGRAWL--------IPKS----LDCENMRIAAQ 147 F ARFS +R Y Y P +G P+ LD E MR AAQ Sbjct: 270 FDARFSCRQRRYRYFFTQPAFCPTPGARGIVRAPELKDDPSSPRPREGWLDIEAMREAAQ 329 Query: 148 HLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN--------------------------- 178 + VG HDF F + Q ++ +R I D+ Sbjct: 330 YFVGSHDFRNFCKVDTSKQITNFVRRILRADLELVDPQRTPLGFVQMPGFERLENSPRNT 389 Query: 179 ---SFGNLIE--------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD- 226 N I V +FL QIR VG L LVG G + + + L Sbjct: 390 GIPEGPNDINPAASKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKN 449 Query: 227 -RKECGPLAPPEGLYFDS 243 R+ +A L Sbjct: 450 PRRPVYEMASDSPLVLWD 467 >gi|156087442|ref|XP_001611128.1| tRNA pseudouridine synthase [Babesia bovis T2Bo] gi|154798381|gb|EDO07560.1| tRNA pseudouridine synthase, putative [Babesia bovis] Length = 414 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 96/306 (31%), Gaps = 67/306 (21%) Query: 6 MIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAI---------FLVTGEIVVVHGAGRT 51 +++ Y G+ Y G+Q Q++ +++ + A+ + + A RT Sbjct: 31 IVLSYIGTNYHGFQIQRDAGDDGIDTVEARVINALVTTDAIHGSHKNNLGKLQLSKASRT 90 Query: 52 DSGVHALRQVAHFDLVREWV---------PVILCKALNAYLKISDTISILNLSIVDKQFH 102 D GVHA + L LN L D I + V + F Sbjct: 91 DKGVHAACTYIGGRFELSHLSAGEPGISKEQCLVSRLNTVL--PDDIRCFQVLRVTRGFC 148 Query: 103 ARFSAIRRSYLYRII---------------------TRQAPLALEKGRAWLIPKSL---- 137 AR +R Y Y I T R + K L Sbjct: 149 ARSMCSKRMYEYVIPLSLLRYRYVCGEDDNKRTFEKTSNLMNLHMNSRQNIHCKRLSSVA 208 Query: 138 -----------DCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG---- 181 D ++ G HDF F + + R I V Sbjct: 209 LHEGTTEERDVDMVLLQSILSDYCGSHDFKNFTQRQKVEEKTTQRFIHEIKVEGSESIGI 268 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + +SFL+ QIR +G V G ++ AL ++ PLAP EGL+ Sbjct: 269 NAVRVIITGQSFLYNQIRKMIGLGYAVYLGVAPRCAIKFAL-SKWHAVNTPLAPAEGLFL 327 Query: 242 DSVEYS 247 + Sbjct: 328 HHPYFD 333 >gi|145545961|ref|XP_001458664.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426485|emb|CAK91267.1| unnamed protein product [Paramecium tetraurelia] Length = 351 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 104/285 (36%), Gaps = 51/285 (17%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIF---LVTGEIVV------VHGAGR 50 + + YNG+ Y G Q QK +++ + +A+ L+ + R Sbjct: 8 QKVLLTFGYNGANYHGLQIQKGVEFETVESKLFQALKDSNLIMEQNANDLSKSGWSRGAR 67 Query: 51 TDSGVHALRQVAHFDLV---------------------REWVPVILCKALNA-YLKISDT 88 TD GVHAL L R+ V K LN + + Sbjct: 68 TDKGVHALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNVINSNLPND 127 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I + ++ +V + F R +A R Y Y AP+++ + E + + Sbjct: 128 IKVHSIKLVTQGFDVRKNARYRFYEYI-----APVSIYSDK----KGEEILEKVSNLVKK 178 Query: 149 LVGRHDFTTF-RSIHCQASSPIRTIDHFDVN----SFGNLIEIRVVARSFLHTQIRSFVG 203 VG H+F + R + +R I V + + +SF++ QIR +G Sbjct: 179 FVGTHNFHNYSRGMKYTDPQSMRYILSIQVELFKCQDREFFKFLIHGQSFIYHQIRKMMG 238 Query: 204 SLKLVGDGKWTSTDLEK-ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + + T ++ + Q R LAP EGL+ + + + Sbjct: 239 IVIQIFQEELPDTFIDNTFFKNQLR---IILAPAEGLFLNRISFE 280 >gi|323337610|gb|EGA78855.1| Pus2p [Saccharomyces cerevisiae Vin13] Length = 406 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 99/311 (31%), Gaps = 79/311 (25%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F V + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY-- 114 A+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 61 AMLNLLSLKITLREDTVA---KLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYLI 115 Query: 115 --RIITRQAPLALEKGRAWLIPKS------LD--------------CENMRIAAQHL--- 149 I+ +L + D ++ AQ L Sbjct: 116 PEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQKLSES 175 Query: 150 -----------------------------------VGRHDFTTFRSIH-CQASSPIRTID 173 VG H+F F + S R I Sbjct: 176 DPLVQDYVGLLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIK 235 Query: 174 HFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V+ I +R+ +SF+ QIR V L + + A RK P Sbjct: 236 KVVVSQASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYI-P 294 Query: 233 LAPPEGLYFDS 243 AP +GL + Sbjct: 295 RAPAQGLLLEG 305 >gi|302789057|ref|XP_002976297.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii] gi|300155927|gb|EFJ22557.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii] Length = 175 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 20/164 (12%) Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 + I +L V FHARFS + R Y Y + I L+ + Sbjct: 9 NRALPADIRVLGWCPVPPGFHARFSCLYREYKY----------------FFIDDGLNIDA 52 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIR 199 M+ A+Q L+G HDF F + + R I FD+ L + V +FL Q+R Sbjct: 53 MKQASQRLLGEHDFRNFCKMDADNIHNYTRQILAFDILPIEECLWVMHVRGNAFLWHQVR 112 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYF 241 L ++G G T T ++ L RK +AP L Sbjct: 113 CMAAVLFMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVL 156 >gi|123483294|ref|XP_001323995.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121906870|gb|EAY11772.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 346 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 99/271 (36%), Gaps = 37/271 (13%) Query: 3 RYCMI---------IEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGE-------IVV 44 RY + Y G+GY G Q + +I + + + + E + Sbjct: 23 RYLITKKPACVVIYFRYIGTGYHGLQYNEKVRTIDSDLFEGLEKSGILPEGSYKRRGKIA 82 Query: 45 VHGAGRTDSGVHALRQVAHF--DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 + A RTD+GVHA Q+ F + + + + +N L TI I++ + F Sbjct: 83 WNEASRTDAGVHACGQLICFKSYEICDMECSQIPELINKNLPSDSTIKIMSCLCTNSPFP 142 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 + A R Y Y + + P LD + +G+H+F + + Sbjct: 143 VKDFATHRKYNYLLP--------LHVFSSTDPDHLDYLR-QKICPLFIGQHNFHNYTNGT 193 Query: 163 CQA-SSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + R I F + + + SF+ QIR + + + T Sbjct: 194 PKTYKGAQRFITDFTFGDVFTINGEEYVLFYIRGISFMLNQIRKMISMVTAASFNQVTPE 253 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ ++L + + L P +GL+ D +EY Sbjct: 254 EVSRSLTEETCR--IQLLPGDGLFLDQIEYE 282 >gi|270719040|ref|ZP_06223281.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270315483|gb|EFA27724.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 96 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDK 99 HF+ NA L D I++ VD Sbjct: 61 VHFETNAVRPEKAWAFGTNANL--PDDIAVSWAKQVDD 96 >gi|169838040|ref|ZP_02871228.1| tRNA pseudouridine synthase A [candidate division TM7 single-cell isolate TM7a] Length = 154 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 4/154 (2%) Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 ++ F+ARF A R+YLY + + E + + ++ E + +G+HDF+ Sbjct: 1 ANENFNARFDAKNRAYLYIMRAEKDITPFESNYITGLKEKVEAEKFQKIMDSFIGKHDFS 60 Query: 157 TFRSIHCQASSPIRTIDHFDV---NSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +F +P+R I + FG N + I + FL T +R +GS V GK Sbjct: 61 SFMKKDKAYRNPVREIFYIKCYYDKKFGKNQVNIEICGNGFLKTMVRIMIGSALTVYFGK 120 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + K L+ D LAP EGLY V Y Sbjct: 121 EKEDYIIKRLKNPDADNKKILAPSEGLYLYKVNY 154 >gi|310821765|ref|YP_003954123.1| tRNA pseudouridylate synthase [Stigmatella aurantiaca DW4/3-1] gi|309394837|gb|ADO72296.1| tRNA pseudouridylate synthase [Stigmatella aurantiaca DW4/3-1] Length = 252 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 88/230 (38%), Gaps = 18/230 (7%) Query: 28 QGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD 87 Q ++E + TG V AGRTD GVHA QV L P L + Sbjct: 2 QSTLEAVL-RSTGVPATVMPAGRTDRGVHARMQVVSLRLEAGDTPEALAAR--LPALLPP 58 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW-------LIPKSLDCE 140 + + + FHA++SA ++Y YR+ + L +++ E Sbjct: 59 DLGVCAVRRPPPSFHAQWSAAGKTYCYRVQLGGRVSETWRPYVLEAAEEPRLAQRAIAPE 118 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIR 199 + Q VG+ DF F + RT++ V+ G L EI++ SF Q+R Sbjct: 119 RLAELLQGAVGQRDFWAFHASSSPRKP--RTLESATVHELEGGLFEIQLRGDSFARYQVR 176 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--LAPPEGLYFDSVEYS 247 VGS L G+ AL++ E P A GL V Y Sbjct: 177 YLVGSALLTAAGQLPEAQWRAALES---AEAIPGLRAAAAGLILWEVRYP 223 >gi|330443553|ref|NP_011452.2| Pus2p [Saccharomyces cerevisiae S288c] gi|1403093|emb|CAA56699.1| pseudouridine synthase 2 [Saccharomyces cerevisiae] gi|329138894|tpg|DAA08039.2| TPA: Pus2p [Saccharomyces cerevisiae S288c] Length = 370 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 99/311 (31%), Gaps = 79/311 (25%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F V + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY-- 114 A+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 61 AMLNLLSLKITLREDTVA---KLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYLI 115 Query: 115 --RIITRQAPLALEKGRAWLIPKS------LD--------------CENMRIAAQHL--- 149 I+ +L + D ++ AQ L Sbjct: 116 PEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQKLSES 175 Query: 150 -----------------------------------VGRHDFTTFRSIH-CQASSPIRTID 173 VG H+F F + S R I Sbjct: 176 DPLVQDYVGLLSGTLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIK 235 Query: 174 HFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V+ I +R+ +SF+ QIR V L + + A RK P Sbjct: 236 KVVVSQASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYI-P 294 Query: 233 LAPPEGLYFDS 243 AP +GL + Sbjct: 295 RAPAQGLLLEG 305 >gi|151943741|gb|EDN62051.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789] gi|190407023|gb|EDV10290.1| pseudouridine synthase [Saccharomyces cerevisiae RM11-1a] gi|256269708|gb|EEU04978.1| Pus2p [Saccharomyces cerevisiae JAY291] gi|259146442|emb|CAY79699.1| Pus2p [Saccharomyces cerevisiae EC1118] gi|323333685|gb|EGA75078.1| Pus2p [Saccharomyces cerevisiae AWRI796] gi|323348667|gb|EGA82910.1| Pus2p [Saccharomyces cerevisiae Lalvin QA23] gi|323354937|gb|EGA86768.1| Pus2p [Saccharomyces cerevisiae VL3] Length = 370 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 99/311 (31%), Gaps = 79/311 (25%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F V + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY-- 114 A+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 61 AMLNLLSLKITLREDTVA---KLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYLI 115 Query: 115 --RIITRQAPLALEKGRAWLIPKS------LD--------------CENMRIAAQHL--- 149 I+ +L + D ++ AQ L Sbjct: 116 PEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQKLSES 175 Query: 150 -----------------------------------VGRHDFTTFRSIH-CQASSPIRTID 173 VG H+F F + S R I Sbjct: 176 DPLVQDYVGLLSGTLSGYCLPPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIK 235 Query: 174 HFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V+ I +R+ +SF+ QIR V L + + A RK P Sbjct: 236 KVVVSQASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYI-P 294 Query: 233 LAPPEGLYFDS 243 AP +GL + Sbjct: 295 RAPAQGLLLEG 305 >gi|323305032|gb|EGA58786.1| Pus2p [Saccharomyces cerevisiae FostersB] Length = 370 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 99/311 (31%), Gaps = 79/311 (25%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F V + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY-- 114 A+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 61 AMLNLLSLKITLREDTVA---KLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYLI 115 Query: 115 --RIITRQAPLALEKGRAWLIPKS------LD--------------CENMRIAAQHL--- 149 I+ +L + D ++ AQ L Sbjct: 116 PEFILIGPPRSSLLHRNVGGCYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQKLSES 175 Query: 150 -----------------------------------VGRHDFTTFRSIH-CQASSPIRTID 173 VG H+F F + S R I Sbjct: 176 DPLVQDYVGLLSGTLSGYCLPPSKLDAFEAAMQDYVGTHNFHNFTTGKLWGDPSAQRHIK 235 Query: 174 HFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V+ I +R+ +SF+ QIR V L + + A RK P Sbjct: 236 KVVVSQASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYI-P 294 Query: 233 LAPPEGLYFDS 243 AP +GL + Sbjct: 295 RAPAQGLLLEG 305 >gi|253742628|gb|EES99427.1| Pseudouridine synthase, putative [Giardia intestinalis ATCC 50581] Length = 351 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 97/285 (34%), Gaps = 59/285 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 ++ ++I +NG+ + G Q G +++G++ + + T + + AGRTD+ Sbjct: 1 MKVALLIAFNGTAFCGNAFQPAGGLTVEGALLDGLQKLGYVKADKTIRDIGLERAGRTDA 60 Query: 54 GVHALRQVAHFDLVREWV-----PVILCKALN--------------------------AY 82 GV A + L R P+ + +N Sbjct: 61 GVSAECMLYTVCLSRSIPEAPQFPLHNPRTINGLKASPLEPSSIYISAMGPATCLVFHFN 120 Query: 83 LKISDTISILNL-SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE- 140 + I +L + + + + F R S R Y Y + LD Sbjct: 121 RVLPPQIRVLGVMTALPENFSPRHSCAAREYEYILG---------------YNIPLDLCT 165 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 AAQ +G + F F + R + +V N+ VV +FL+ Q+R Sbjct: 166 KANSAAQRFLGSNSFHNFCHWEKEQELVYNRQVYCSEVYVRENVCIFHVVGSAFLYHQVR 225 Query: 200 SFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFD 242 L + G + +E L + + PL P + L F Sbjct: 226 YMASMLAHIMAGLERESIIEYLLTTEQLRPRRSFPLLPSQYLTFK 270 >gi|321468438|gb|EFX79423.1| hypothetical protein DAPPUDRAFT_319620 [Daphnia pulex] Length = 424 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 85/234 (36%), Gaps = 56/234 (23%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS---------SIQGSIEKAIFLVTGEIVV------- 44 M RY + Y+G+ + G QRQ SIQ +EK I Sbjct: 1 MQRYLIKFSYSGTRFRGLQRQPGEIYNDEIPYRASIQTILEKGILRFLQHKKSATSFEPG 60 Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 V + RTD GVH+ +AH DL L K +N N+ V FHAR Sbjct: 61 VQFSSRTDQGVHSFCNLAHVDLE-------LLKNVN------------NVEAVPSTFHAR 101 Query: 105 FSAIRRSYLYRIITRQ----APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR- 159 +S+ R YLYRI +E + + I K + + G DF +F Sbjct: 102 YSSYSRHYLYRIGVTPQDVKCHPVIEWRKCYFIEKPFCLDKAIEVCKLFEGTKDFASFCH 161 Query: 160 --SIHCQASSPIRTIDHFDVNSFG--------------NLIEIRVVARSFLHTQ 197 S +RTID F + + + + +RSF++ Q Sbjct: 162 GISGRPPGYPTVRTIDAFHIKPGRPLFDPLYDPLYSGIDFYDFHIKSRSFMYRQ 215 >gi|226288982|gb|EEH44494.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18] Length = 574 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 98/339 (28%), Gaps = 95/339 (28%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVH 56 + Y G Y G++ +I+ + KA+ + + V G + + V Sbjct: 95 IALKFAYLGQRYGGYEHSNGNITPLPTIEEELWKALRKARLIFPQSVEGDGQAQVERAVA 154 Query: 57 ----------ALRQVAHFDL---------------VREWVPVILCKALNAYLKISDTISI 91 A R A L + + L + + I + Sbjct: 155 TPEISSTTPDAYRSGAETPLVGASGCASEESDNEDEWDDIADELPYITILNKVLPEDIRV 214 Query: 92 LNLSIVDK-QFHARFSAIRRSYLYRIIT-----RQAPLALEKGRAWL-------IPKS-- 136 L F ARFS R Y Y PL K + P + Sbjct: 215 LAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGSDQKSSGSDSYPSTEL 274 Query: 137 ----LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN------------ 178 LD E MR A++L+G HDF F I Q ++ +R I H D+ Sbjct: 275 REGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQITNHVRHIYHADIELLDPQTKPLSYL 334 Query: 179 ----------------------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 S + I + +FL Q+R L L+G Sbjct: 335 GQPEFQALEAGNGEVDRNLVTKDSLLSSSNMKIYSITIHGSAFLWHQVRHLAAILFLIGQ 394 Query: 211 GKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 G + + + L + R+ +A L + Sbjct: 395 GLERPSIIPELLDIEKNPRRPTYEIASDAPLVLWDCIFP 433 >gi|83305357|sp|P53167|PUS2_YEAST RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA pseudouridylate synthase 2; AltName: Full=tRNA-uridine isomerase 2 gi|1322568|emb|CAA96766.1| PUS2 [Saccharomyces cerevisiae] Length = 370 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 99/311 (31%), Gaps = 79/311 (25%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F V + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY-- 114 A+ + + V LNA L I + + V+K+F+AR + R Y Y Sbjct: 61 AMLNLLSLKITLREDTVA---KLNAAL--PPEIRVWGIQPVNKKFNARSACDSRWYQYLI 115 Query: 115 --RIITRQAPLALEKGRAWLIPKS------LD--------------CENMRIAAQHL--- 149 I+ +L + D ++ AQ L Sbjct: 116 PEFILIGPPRSSLLHRNVGGSYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQKLSES 175 Query: 150 -----------------------------------VGRHDFTTFRSIH-CQASSPIRTID 173 VG H+F F + S R I Sbjct: 176 DPLVQDYVGLLSGTLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIK 235 Query: 174 HFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V+ I +R+ +SF+ QIR V L + + A RK P Sbjct: 236 KVVVSQASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYI-P 294 Query: 233 LAPPEGLYFDS 243 AP +GL + Sbjct: 295 RAPAQGLLLEG 305 >gi|308813608|ref|XP_003084110.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri] gi|116055993|emb|CAL58526.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri] Length = 450 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 92/260 (35%), Gaps = 34/260 (13%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 + Y G+GY G QR +I+G +E AI G V A RTD GV Sbjct: 45 ALTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAARTDKGV 104 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ QV +V P + +N L + + + V Y Y Sbjct: 105 SAVGQVIALKMV--MEPDGMLARINEAL--PERFEVFGIDRVTGG-----------YEYV 149 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL---VGRHDFTTFR-SIHCQASSPIRT 171 I T L A + E R + L G H+F + + + R Sbjct: 150 IPTWAFDPNLFVEGAEKEKFTFTEETRRRVERVLGNYCGTHNFHNYTVKVKPTDAQAKRY 209 Query: 172 IDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 I F+ + + VV +SF+ QIR +G++ V G D + A+ + Sbjct: 210 ILSFECSQPFEVDGEEFVRCEVVGQSFMLHQIRKLIGTMLAVMRGTLDEDDQKFAILSHQ 269 Query: 227 RKECGPLAPPEGLYFDSVEY 246 P+AP GL+ Y Sbjct: 270 FVPT-PMAPELGLFLCECIY 288 >gi|224000315|ref|XP_002289830.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975038|gb|EED93367.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 323 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 112/308 (36%), Gaps = 67/308 (21%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTDSGVH 56 +++ + G+ Y G+Q ++Q +IE +F + RTD GVH Sbjct: 1 ILVSFLGTNYSGFQINSTQHTLQAAIELGLFKAGLISPSNFGWPSKYSWSNSARTDKGVH 60 Query: 57 ALRQVAHFD--LVREWVPVILCKALNAYL-----KISDTISILNLSIVDKQFHARFSAIR 109 A QV ++ V + LNA + + I +L++ V + F AR + + Sbjct: 61 AAAQVVSMKGEMIFHSDTVSIEDQLNAMREKVNEHLPNDIRVLDIERVTRAFCARTNRDK 120 Query: 110 RSYLYR-----------------------IITRQAPL------------------ALEKG 128 Y Y I ++ +++ Sbjct: 121 VRYQYMVPSFMFSSREEICCAFGNIGETAIEDAKSRAKITPMEASNIVQDAVTDEVMQQA 180 Query: 129 RAWLIPKSLDCENM---RIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFD-----VNS 179 R LI ++ + M R + G H F + R + +S R I F V Sbjct: 181 RGKLIGYRVNDDQMERLRSGLKVFEGTHTFHNYTRRLGSDNASASRYIISFAPLDPIVVD 240 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I +++V +SFL QIR + + + G T ++++L+ R + +AP +GL Sbjct: 241 GTEWIPVQIVGQSFLLNQIRKMISAAVDLARGTVTHEQIQQSLKKGSRMKVN-VAPAQGL 299 Query: 240 YFDSVEYS 247 + D + Sbjct: 300 FLDRSYFE 307 >gi|257076635|ref|ZP_05570996.1| tRNA pseudouridine synthase A [Ferroplasma acidarmanus fer1] Length = 250 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 37/246 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y + Y+G+ + G+QR +S++ SI K + G + A RTD V A V Sbjct: 1 MYYLIKYGYDGTSFTGFQRGNGENSVEDSIIKILKK-YGIGNNIESAARTDRYVSARGNV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 D + LNA + F +SA+ R Sbjct: 60 MLVDTDTNI--GNVMGILNA--------------RIPGMFFYSYSALDRYL-------NP 96 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K +++I +++D + VG+HDF F + + + +RTI + ++ Sbjct: 97 RHNSMKQYSYIITENIDISRVMETLGEFVGQHDFVNFCKLDSR--NTVRTIKSINYSTRN 154 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + RSF+ QIRS + + GK LE + LA PE L Sbjct: 155 GFYIINIQGRSFVWHQIRSMMAFALM---GKKHPFSLE--------NKFTYLASPEPLVL 203 Query: 242 DSVEYS 247 + Y Sbjct: 204 MDISYD 209 >gi|223996591|ref|XP_002287969.1| hypothetical protein THAPSDRAFT_268327 [Thalassiosira pseudonana CCMP1335] gi|220977085|gb|EED95412.1| hypothetical protein THAPSDRAFT_268327 [Thalassiosira pseudonana CCMP1335] Length = 369 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 82/281 (29%), Gaps = 60/281 (21%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y+G+ + K V +V+ RTD+GVHA VA F Sbjct: 100 LKIAYDGTH---------------LLAKVYGNVNPNQIVMDSCSRTDAGVHATHLVAQFY 144 Query: 66 LVRE--------WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L LN L + ++ S FH ++Y+Y+ Sbjct: 145 CYSTNLSNDMEVTSLSKLVFVLNRML--PPDVRVMAASPAPFAFHPTLHVRSKTYIYQFA 202 Query: 118 TRQAPLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHD-FTTFRSIHCQASSPIRTIDHF 175 + W + S M D +FR + S I+ Sbjct: 203 IGPVHDPIRSQYVWHLDGSSGRAVGMN--GSRFCLERDGGISFRPVDNFMSDSSNAINGL 260 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL------------- 222 + + FL+ +R+ VG++ VG G D++ AL Sbjct: 261 --MESPQSFSVVITGDRFLYKMVRNIVGTIVAVGCGHLEVNDVQMALHTGKWGDNIGAVE 318 Query: 223 QAQDRKECGPL----------------APPEGLYFDSVEYS 247 + + + AP GL VEY Sbjct: 319 EEESKSSDDFTSSHVKSNSTCIIRRICAPARGLSLHEVEYP 359 >gi|308159447|gb|EFO61978.1| Pseudouridine synthase, putative [Giardia lamblia P15] Length = 351 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 98/289 (33%), Gaps = 57/289 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 +R +++ +NG+ + G Q S+++ ++ + + + T + + GRTD+ Sbjct: 1 MRAALLVAFNGAAFRGNAYQPTRDSTVERALFEGLQRIGYLKENETIRDIELERTGRTDA 60 Query: 54 GVHALRQVAHFDLVREWV-----PVILCKALNA--------------------------Y 82 GV A + L + P +AL A Sbjct: 61 GVSAECMLYTVRLSKIIPDVPHLPPHNPRALGALEAFPIESSSIYVHTSGIATCLVFHLN 120 Query: 83 LKISDTISILNL-SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 + + +L L + + K F AR S + R Y Y + + E Sbjct: 121 RVLPSQVRVLGLLTAIPKDFSARHSCVAREYEYIL--GYNIPPHLR------------EK 166 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASS-PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 AA+ +G + F F + R I +V N+ V+ +FL+ Q+R Sbjct: 167 ANSAARRFLGSNSFHNFCHHEKDHKTVYNRQIYCSEVYEHENVCIFHVIGSAFLYHQVRY 226 Query: 201 FVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 L + G + +E L + PL P + L F Y Sbjct: 227 MASMLVHIMAGLERESAIEYLLTKELSTFGHSLPLVPSQYLTFKCGWYP 275 >gi|159118829|ref|XP_001709633.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803] gi|157437750|gb|EDO81959.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803] Length = 531 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 93/325 (28%), Gaps = 97/325 (29%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIF-------LVTGEIVVVHGAGRTDSGV 55 + + Y+G+ Y G +Q N +I+ + A+ V +GRTD GV Sbjct: 93 IAIQVCYDGTEYAGLAQQPNREYTIEELLLNALRGAALIPQHAEASDVHFERSGRTDRGV 152 Query: 56 HALRQVAHFDL----------VREWVPVILCKALNAYLKIS------------------- 86 A QV F + + L Sbjct: 153 SAAGQVFSFYVRTNNKGMGPQPIPAPDPRFYRDRRDGLTPPAKPSDSATDDRGADGDLVN 212 Query: 87 ---------------------------DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +TI +L + VD+ F AR S R Y+Y Sbjct: 213 AEKEPELKQVPQEQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYVYMFGEV 272 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVN 178 SL+ M A LVG HDF + + R I + Sbjct: 273 ---------------GSLNIRRMAEACTKLVGFHDFRNICKPSLDSIKTFERVIFSCFLE 317 Query: 179 SFGNLIEIR---------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 G + V +FL+ QIR L +G + + L Sbjct: 318 IDGQPYDCENDRMAMKENSTLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLN 377 Query: 224 AQDR--KECGPLAPPEGLYFDSVEY 246 + K P+AP E L F+ EY Sbjct: 378 VEQFPGKPDYPIAPGELLLFERAEY 402 >gi|256087925|ref|XP_002580112.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665620|emb|CAZ36351.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 1304 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 75/227 (33%), Gaps = 49/227 (21%) Query: 36 FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREW----------------------VPV 73 F+ GRTD GV + QV + Sbjct: 959 FIFDRNECDFSVCGRTDRGVSGMCQVISLVSRSLIARGVGVIEDSGPCISERQDVPDEEM 1018 Query: 74 ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 ALN L I +L S V F ARF +RSY Y Sbjct: 1019 DYVSALNRNL--PRDIRVLAWSPVSPDFSARFMCCKRSYEYYFPES-------------- 1062 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS--PIRTIDHFDVNSFGN------LIE 185 LD ++M A LVG HDF F + + + IR I V+ + L Sbjct: 1063 --GLDIKSMIDAGNRLVGVHDFRNFCASRIEKDTVTFIREIFEVVVSDVDSCDHHSKLCR 1120 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 I + A FL+ QIR + L +VG G + + ++ L + P Sbjct: 1121 ISISASGFLYHQIRFVMSILFMVGRGYESPSVVDDMLDL-SKTPAKP 1166 >gi|49899182|gb|AAH75766.1| Zgc:56653 protein [Danio rerio] Length = 386 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 82/247 (33%), Gaps = 61/247 (24%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 60 VALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKLIQDRQTSCYHRCGRTDKGVSAF 119 Query: 59 RQVAHFDLVREW---------------------VPVILCKALNAYLKISDTISILNLSIV 97 QV DL + K LN L I IL + V Sbjct: 120 SQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVL--PQDIRILQWAPV 177 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 + F ARF R+Y Y + LD E M AA+ G HDF Sbjct: 178 ESGFSARFDCQSRTYRY----------------YFPRGDLDLELMAEAAKRYEGTHDFRN 221 Query: 158 FRSIHCQASSPIRTIDHFDVN---------------SFGNLIEIRVVARSFLHTQIRSFV 202 + + +P + V+ EI + +F +++ V Sbjct: 222 LCKMDVE-KNPRKPQYSMAVDYPLALYDCHFEGVNWRNETEEEIHI-LNTFHQHWVQNAV 279 Query: 203 GSLKLVG 209 + L+G Sbjct: 280 KTQILLG 286 >gi|149756822|ref|XP_001493954.1| PREDICTED: similar to tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Equus caballus] Length = 351 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 89/252 (35%), Gaps = 30/252 (11%) Query: 17 GWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGVHALRQVAHF 64 G QR +I+ + A+ + RTD GV A QV Sbjct: 27 GMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSL 86 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + W+ + + +N++L I IL L V F+++ R+Y Y + T A Sbjct: 87 ---KVWLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDARTYFYMLPT--FAFA 139 Query: 125 LEKGRAWLIPKSLDCENM---RIAAQHLVGRHDFTTFRS-IHCQASSPIRTI-----DHF 175 + L E + G H+F F S + S R I + Sbjct: 140 HKDRDVQDETYRLTAETLQSVNRLLACYKGTHNFHNFTSQKGPREPSAQRYILDMYCEEP 199 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V I+V +SF+ QIR VG + + G + L ++ + K P AP Sbjct: 200 FVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLARSW--GEAKVDVPKAP 257 Query: 236 PEGLYFDSVEYS 247 GL + V + Sbjct: 258 GLGLVLERVHFE 269 >gi|170086730|ref|XP_001874588.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649788|gb|EDR14029.1| predicted protein [Laccaria bicolor S238N-H82] Length = 525 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 95/294 (32%), Gaps = 56/294 (19%) Query: 2 IRY-----CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHG 47 RY +++ + GSGY G Q + +I+G++ A+ V V + Sbjct: 93 PRYPKRQCALLVGFCGSGYSGMQMYGHTRTIEGALFGALVKVGAVSQDNADDPVKVALAR 152 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A RTD+GVHA + ++ + A ++ I + F+AR Sbjct: 153 AARTDAGVHAAGNLVSLKMIITVPGIKDLVA-RINEELPPEIRLWGYVRTQNSFNARLVC 211 Query: 108 IRRSYLYRIITRQAPLA-------------------------------LEKGRAWLIPKS 136 R Y Y T L + R W + Sbjct: 212 DSRKYTYFFPTYLMIPPKPGTGLHRVLQLPSQPHSFWEGAISDSFQDDLRRKRCWRTGQE 271 Query: 137 LDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNS-----FGNLIEIRVVA 190 + +R A+ G H+F F + S R + +V+ I + Sbjct: 272 -QVQKLRELAKGYEGTHNFHNFTVGREFKERSNHRFMKQIEVSDPVVYGDTEWISVMFHG 330 Query: 191 RSFLHTQIRS-FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +SF+ Q+R + L + + + +++ R P P GL + Sbjct: 331 QSFMLHQVRRLMMSMLVMTCRTETSPQIIDEL--YGPRNVFVPKMPSLGLLLEH 382 >gi|321265516|ref|XP_003197474.1| pseudouridylate synthase [Cryptococcus gattii WM276] gi|317463954|gb|ADV25687.1| Pseudouridylate synthase, putative [Cryptococcus gattii WM276] Length = 560 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 94/309 (30%), Gaps = 71/309 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFL---------VTGEIVVVHGAGRT 51 R ++I Y G+GY G Q Q + +I+G I A+ V V + A RT Sbjct: 123 RRCAVLIGYCGTGYQGMQIQDHTDRTIEGEIFAALVKAGAVSADNAVDARKVDIARAART 182 Query: 52 DSGVHALRQVAHF--DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 D+GVHA V A + D I + K F+AR +A Sbjct: 183 DAGVHAAGNVISIKMITEPPLPEGFKNVAEYVNTFLPDQIRMWGWVRTVKSFNARTAADS 242 Query: 110 RSYLYRIIT---------------------------RQAPLAL----------------- 125 R Y Y + + + P + Sbjct: 243 RIYEYLLPSYCLIPPHKDDPLAKHLDISSPDWREIVGEYPCSFADARLPMPTSDEGEVDP 302 Query: 126 ------EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT------ID 173 E+ R W + + R G H+F + ++ + Sbjct: 303 KVRGEYERKRKWRVDERT-LNRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIQLEVK 361 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V I +++ +SF+ QIR + L + L + + K P Sbjct: 362 EPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGPK--KIHIPK 419 Query: 234 APPEGLYFD 242 APP GL + Sbjct: 420 APPLGLLLE 428 >gi|328861209|gb|EGG10313.1| hypothetical protein MELLADRAFT_76951 [Melampsora larici-populina 98AG31] Length = 568 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 64/371 (17%), Positives = 104/371 (28%), Gaps = 135/371 (36%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAI----------------------- 35 + + I Y G + G Q ++++G + KA+ Sbjct: 87 RKIALQIVYQGWNHGGLAWQPEITPLTTVEGELFKALLSARLVEMSEEFQEEDREEILKT 146 Query: 36 ----FLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILC--------------- 76 V E AGRTD+GV QV + + L Sbjct: 147 EEWREAVDLEGWEYSRAGRTDAGVSGSGQVVSLWVRSNLLDSKLRQELLDSKQSPPGSFR 206 Query: 77 ------------------KALNA----------------YLKISDTISILNLSIVDKQFH 102 K LN+ + ++I ++ S V +F Sbjct: 207 DPEGFERSTDEENEEVHPKILNSSISNKPQEELPYISILNSLLPESIKVIAWSPVSTEFD 266 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARFS R Y Y + +SLD E MR A+ L+G HDF + Sbjct: 267 ARFSCKGRHYKY----------FFTKFESDLNQSLDIEMMREGAKKLIGEHDFRNLCKLD 316 Query: 163 C--QASSPIRTIDHFDVN---------------------------SFGNLIEIRVVARSF 193 Q + R I ++N + + +F Sbjct: 317 KSKQIENFKREIYSAEINLVDENAIGPEFNKNDGLEGSVGQDGLGEKNQMYVFDLRGSAF 376 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKAL-----------------QAQDRKECGPLAPP 236 L+ Q+R+ + L L+G + ++ L + DRK +A Sbjct: 377 LYNQVRNIMAILFLIGSRLESPNLIDGLLYTDSSAQKPEGLGLITDEFVDRKPEMAIASE 436 Query: 237 EGLYFDSVEYS 247 L Y Sbjct: 437 LPLLLWDCIYP 447 >gi|38639411|gb|AAR25833.1| tRNA pseudouridine synthase A [Buchnera aphidicola (Tetraneura caerulescens)] Length = 107 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 51/93 (54%) Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F+ FR+ +CQ+ + R I D+ + I + A +FL+ +R+ VGSL VG + Sbjct: 1 FSGFRAKNCQSKTAFRKIIRLDIFRKNFFVIIEIEANAFLYKMVRNIVGSLIEVGLKRKN 60 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + ++ L++++RK GP A GLY V+Y Sbjct: 61 VSWIDTILKSKNRKLSGPTASANGLYLVYVDYP 93 >gi|330902540|gb|EGH33555.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 231 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ +G ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD E N L +S+ ++ SA R +R+ Sbjct: 68 VHFDTQAERTLKAWVMGANINL--PHDVSVTWARVMPAS-----SAAGRPSSWRLP 116 >gi|58262434|ref|XP_568627.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans JEC21] gi|57230801|gb|AAW47110.1| pseudouridylate synthase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 560 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 97/309 (31%), Gaps = 71/309 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFL---------VTGEIVVVHGAGRT 51 R ++I Y G+GY G Q Q + +I+G + A+ + V + A RT Sbjct: 123 RRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDIARAART 182 Query: 52 DSGVHALRQVAHF-DLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 D+GVHA V + +P A + D I + K F+AR +A Sbjct: 183 DAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWGWVRTVKSFNARTAADS 242 Query: 110 RSYLYRIIT---------------------------RQAPLAL----------------- 125 R Y Y + + + P + Sbjct: 243 RIYEYLLPSYCLIPPHKDDSLAKHLDLSSPDWREIVGEGPCSFADARLPMPTSDEGEVDP 302 Query: 126 ------EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT------ID 173 E+ R W + + R G H+F + ++ + Sbjct: 303 KVRGEYERKRKWRVDEKT-LGRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIKLEVK 361 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V I +++ +SF+ QIR + L + L + + K P Sbjct: 362 EPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGPK--KIHIPK 419 Query: 234 APPEGLYFD 242 APP GL + Sbjct: 420 APPLGLLLE 428 >gi|134118796|ref|XP_771901.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254505|gb|EAL17254.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var. neoformans B-3501A] Length = 560 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 97/309 (31%), Gaps = 71/309 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFL---------VTGEIVVVHGAGRT 51 R ++I Y G+GY G Q Q + +I+G + A+ + V + A RT Sbjct: 123 RRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDIARAART 182 Query: 52 DSGVHALRQVAHF-DLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 D+GVHA V + +P A + D I + K F+AR +A Sbjct: 183 DAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLPDQIRMWGWVRTVKSFNARTAADS 242 Query: 110 RSYLYRIIT---------------------------RQAPLAL----------------- 125 R Y Y + + + P + Sbjct: 243 RIYEYLLPSYCLIPPHKDDSLAKHLDLSSPDWREIVGEGPCSFADARLPMPTSDEGEVDP 302 Query: 126 ------EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT------ID 173 E+ R W + + R G H+F + ++ + Sbjct: 303 KVRGEYERKRKWRVDEKT-LGRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIKLEVK 361 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 V I +++ +SF+ QIR + L + L + + K P Sbjct: 362 EPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGPK--KIHIPK 419 Query: 234 APPEGLYFD 242 APP GL + Sbjct: 420 APPLGLLLE 428 >gi|154418432|ref|XP_001582234.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121916468|gb|EAY21248.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 345 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 28/260 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDSG 54 ++ Y G+ Y G Q+ + +++ + +A+ + A RTD+G Sbjct: 29 IILLYRYIGTQYHGLQQNIDTHTVEKELFQALISAGFLSDQANCNLNRIKWSEASRTDAG 88 Query: 55 VHALRQVAHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VHA QV F + + +N L + I I+ + +QF+A+ A R+Y Sbjct: 89 VHACAQVLSFKASGLKGICIADIPDLINKQLPRTSDIEIITCITLRRQFYAQKFAESRNY 148 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRT 171 + + T + +L L +G ++ F S ++ S +R Sbjct: 149 NFLLPTNAFSSNSIEHLNYLRTSIL---------PLFIGWLNYHNFTSNKSASNPSSMRK 199 Query: 172 IDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 ID F + + SF+ QIR + ++ + ++++ L + Sbjct: 200 IDVFTFTDPFEVEGVEFVLFTIHGESFMLNQIRKMIATVISASHNYIGAEEVKRCLSEE- 258 Query: 227 RKECGPLAPPEGLYFDSVEY 246 + P +GL D V+Y Sbjct: 259 -GWSIKMCPGDGLMLDHVDY 277 >gi|326929552|ref|XP_003210926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Meleagris gallopavo] Length = 596 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 20/217 (9%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 + + RTD GV A Q+ + + + + +N +L I IL L V Sbjct: 173 KKMSFQRCARTDKGVSAAGQIVSL---KVRLIDDILEKINNHL--PSHIRILGLKRVTGG 227 Query: 101 FHARFSAIRRSYLYRIIT----RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 F+++ R+Y Y + T + E+ A+ + + E + G H+F Sbjct: 228 FNSKNKCDARTYAYMLPTFAFAHKDHDVQEE--AYRLSRET-LEKVNSLLACYKGTHNFH 284 Query: 157 TFRS-IHCQASSPIRTIDHF-----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 F S + S R I V I+V +SF+ QIR +G + + Sbjct: 285 NFTSQKGPKDPSARRYIMEMYCGEPFVRENIEFAVIKVKGQSFMMHQIRKMIGLVIAIVK 344 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G + +E++ + K P AP GL + V + Sbjct: 345 GYAPESVIERSW--GEEKVDVPKAPGLGLVLERVHFE 379 >gi|237844499|ref|XP_002371547.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49] gi|211969211|gb|EEB04407.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49] Length = 370 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 21/148 (14%) Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 LNA L I I+ + V F ARF R Y Y + + LD Sbjct: 22 LNAVL--PGDIRIVASAPVSPTFDARFDCTGRVYKY----------------FFHSEGLD 63 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFGNLI--EIRVVARSFLH 195 + M AAQ VG H+F F + Q +P RT+ F V S G+ + + RSFL Sbjct: 64 LQRMHQAAQRFVGEHNFRYFCKLDPRQYRNPRRTLTSFAVESAGDGVCAVATIAGRSFLW 123 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 Q+R + +L VG G + + L+ Sbjct: 124 HQVRFMMAALLKVGRGSCDESYIVDLLK 151 >gi|207345658|gb|EDZ72410.1| YFL001Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 315 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 66/195 (33%), Gaps = 30/195 (15%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTIS 90 + GRTD GV A+ QV ++ N + D I Sbjct: 13 QDYKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIR 72 Query: 91 ILNLS-IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL 149 I + F ARFS + R Y Y I + +L+ E M AA + Sbjct: 73 ISAVCLRPPPNFDARFSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYF 116 Query: 150 VGRHDFTTFRSIH--CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLK 206 VG DF F + Q ++ RTI + ++ +FL Q+R + L Sbjct: 117 VGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILF 176 Query: 207 LVGDGKWTSTDLEKA 221 LVG + + Sbjct: 177 LVGQSLEVPEIVLRL 191 >gi|169849317|ref|XP_001831362.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130] gi|116507630|gb|EAU90525.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130] Length = 568 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 95/298 (31%), Gaps = 68/298 (22%) Query: 5 CMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 ++I + GSGY G Q Q + +I+G + +A+ V V + A RTD+ Sbjct: 137 ALLIGFCGSGYSGMQIQPMDSVKTIEGVLFQALVKVGAVSQDNADDPVKVALARAARTDA 196 Query: 54 GVHALRQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V ++ V L A+N L I F+ARF R Y Sbjct: 197 GVHAAGNVVSMKMISTIPGVPDLVAAVNEQL--PPEIRFWGFVRTQNSFNARF----RKY 250 Query: 113 LYRII--------------------------TRQAP-LALE--------------KGRAW 131 Y T P + R W Sbjct: 251 TYFFPSYLLIPPKPGSGLDERLKAFNESLGDTVPRPIHPFWADAPGNSTKEEDLIRKRRW 310 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIR-----TIDHFDVNSFGNLIE 185 + E +R A+ G H+F F + S R TI+ V I Sbjct: 311 RVDSGP-IERLRETARRYEGTHNFHNFTVGRDFKDRSNFRFMKSITIEDPVVYGETEWIS 369 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +SF+ QIR + L L +++ + + P P GL + Sbjct: 370 VLFHGQSFMLHQIRKMMSGLVLSCRTGAPPEVIDQLYNEE--QVFVPKMPSLGLLLEE 425 >gi|302495964|ref|XP_003009994.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371] gi|291173519|gb|EFE29349.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371] Length = 409 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 73/238 (30%), Gaps = 66/238 (27%) Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + LN L + I +L + F ARFS +R Y Y Sbjct: 29 WDDIADELPYIQILNGAL--PEDIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPT 86 Query: 125 -----------------LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QA 165 LE+ R LD E MR AAQ+ VG HDF F + Q Sbjct: 87 PGARGIVRSSELKDDLSLERPREGW----LDIEAMREAAQYFVGSHDFRNFCKVDTSKQI 142 Query: 166 SSPIRTIDHFDVN--------------------------------------SFGNLIEIR 187 ++ +R I D+ + G + Sbjct: 143 TNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGSRNTGVPENINDINPAAGKVYSFT 202 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDS 243 V +FL QIR VG L LVG G + + + L R+ +A L Sbjct: 203 VHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPRRPVYEMASDSPLVLWD 260 >gi|67624003|ref|XP_668284.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54659475|gb|EAL38050.1| hypothetical protein Chro.80602 [Cryptosporidium hominis] Length = 210 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 70/187 (37%), Gaps = 22/187 (11%) Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK 135 + LN L I ++ V F ARF R Y Y PL E+ + PK Sbjct: 1 MEMLNGVL--PWDIRVIGYCEVRPDFSARFDCEYRLYKYFF-----PLNHERTKISKFPK 53 Query: 136 --SLDCENMRIAAQHLVGRHDFTTFRSIH---CQASSPIRTIDHFDVNSFGNLIEI---R 187 M IAA+ +G HD+ F + + + IRTI FD+N Sbjct: 54 IPPEQVPLMDIAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDINFVDENRTFAVAT 113 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP----LAPPEGLYFDS 243 + +FL Q+R +G L +G K+ + + L ++K +A GL Sbjct: 114 IKGSAFLWHQVRLMMGILFEIGQQKFNPEVITQMLTDVEQKNIAELSFQMATELGLVLWD 173 Query: 244 V---EYS 247 EY Sbjct: 174 CVFKEYD 180 >gi|156040419|ref|XP_001587196.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980] gi|154696282|gb|EDN96020.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980 UF-70] Length = 592 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 68/217 (31%), Gaps = 42/217 (19%) Query: 71 VPVILCKALNAYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRIIT---RQAPLALE 126 + + LN L I IL F ARFS R Y Y P LE Sbjct: 222 DEIPYPQVLNRLL--PPDIRILAWCPSPPVDFSARFSCRERRYRYFFTQPAFSPIPSQLE 279 Query: 127 KGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNSFGN 182 G + K LD E MR AA+ G HDF F + Q ++ R I + ++ + Sbjct: 280 HGASASKMKDGWLDIEAMREAAKLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVKD 339 Query: 183 L------------------------------IEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + +FL Q+R V L LVG G Sbjct: 340 YTSSLAYVNGDSFLDDSIRSKIDGESKAPKVYTFDLHGSAFLWHQVRHMVAILFLVGQGL 399 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEYS 247 + + + L + + +A L + Sbjct: 400 EKPSVVSELLDVEKNPGRPAYEMATDTPLVLWDCIFP 436 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 19/90 (21%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL----------------VTGEIVV 44 + + Y G Y G++ + ++I+ + +A+ V E Sbjct: 60 IALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPMAPGEVNWEGCE 119 Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVI 74 GRTD GV A QV + Sbjct: 120 YSKCGRTDKGVSAFGQVIGIRVRSNRPLAK 149 >gi|323348774|gb|EGA83014.1| Deg1p [Saccharomyces cerevisiae Lalvin QA23] Length = 315 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 66/195 (33%), Gaps = 30/195 (15%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN----------AYLKISDTIS 90 + GRTD GV A+ QV ++ N + D I Sbjct: 13 QNYKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIR 72 Query: 91 ILNLS-IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL 149 I + F ARFS + R Y Y I + +L+ E M AA + Sbjct: 73 ISAVCLRPPPNFDARFSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYF 116 Query: 150 VGRHDFTTFRSIH--CQASSPIRTIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLK 206 VG DF F + Q ++ RTI + ++ +FL Q+R + L Sbjct: 117 VGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILF 176 Query: 207 LVGDGKWTSTDLEKA 221 LVG + + Sbjct: 177 LVGQSLEVPEIVLRL 191 >gi|154320712|ref|XP_001559672.1| hypothetical protein BC1G_01828 [Botryotinia fuckeliana B05.10] gi|150853517|gb|EDN28709.1| hypothetical protein BC1G_01828 [Botryotinia fuckeliana B05.10] Length = 575 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 69/225 (30%), Gaps = 44/225 (19%) Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRIIT---R 119 D + + LN L I IL F ARFS R Y Y Sbjct: 215 LDFDHITDEIPYPQVLNRLL--PPDIRILAWCPSPPIDFSARFSCRERRYRYFFTQPAFS 272 Query: 120 QAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHF 175 P LE G + K LD + MR AA+ G HDF F + Q ++ R I + Sbjct: 273 PIPSQLEHGTSASKMKDGWLDIDAMREAARLYEGLHDFRNFCKVDPGKQITNFERRIFYA 332 Query: 176 DVNSFGNL------------------------------IEIRVVARSFLHTQIRSFVGSL 205 ++ + + +FL Q+R V L Sbjct: 333 NIEEVDDYTSSLAYVNGGSFLDESVRSKADGEIKAPKIYTFDLHGSAFLWHQVRHMVAIL 392 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEYS 247 LVG G + + + L ++ P A L + Sbjct: 393 FLVGQGLEKPSVVTELLDV-EKNPGRPTYEMATDTPLVLWDCIFP 436 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 19/87 (21%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL----------------VTGEIVV 44 + + Y G Y G++ + ++I+ + +A+ V E Sbjct: 60 IALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPLAPGEVNWEGCE 119 Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWV 71 GRTD GV A QV + Sbjct: 120 YSKCGRTDKGVSAFGQVIGIRVRSNRP 146 >gi|325182027|emb|CCA16480.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 209 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 41/201 (20%) Query: 84 KISDTISILNLSIVDKQFHARFSAIR---RSYLYRIITRQAPLALEKGRAWLIPKSLDCE 140 ++ TI + L+ + ++F F+ IR + Y+Y I P +W + K ++ Sbjct: 4 RLPSTIRVHCLAPL-EEFVDDFTRIRPRYKRYVYYIQQGARPDLELSKYSWFLRKRIEPT 62 Query: 141 NMRIAAQHLVGRHDFTTFR---SIHCQASSPIRTIDHFDVN------------------- 178 ++ A L+G HDF F + + S RT+ V Sbjct: 63 RLQQALNFLLGTHDFEPFSQGLGMVLEGKSTTRTLYQASVTLKRNVNFCLDPAVCGSGDT 122 Query: 179 -------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + + I I +VA FL +R VGSL+L+G+G ++ + L++Q Sbjct: 123 VNNQAKLCDMEGKTLTHFICIELVANGFLRHMVRRIVGSLRLIGEGSQHPQEMHRILKSQ 182 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 E GP AP +GL+ + + Sbjct: 183 V--EAGPSAPAKGLWLQQIWF 201 >gi|123438137|ref|XP_001309856.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121891601|gb|EAX96926.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 365 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 92/265 (34%), Gaps = 37/265 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSGVH 56 + Y G+ Y G ++ +++A+ + T + + RTD+GVH Sbjct: 40 IALCYGYLGTNYHGSSLHDQDKTVTLELQEALVNLGVISPNRTKGALKWSESSRTDTGVH 99 Query: 57 ALRQVAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A +QVA F L L + + L + I + F+A+ SA R Y Y Sbjct: 100 AAKQVATFRLVLPEGVKVKDLPRLIQKQLSKNSPIRVWAAVKPGIIFNAQQSASSRRYHY 159 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIA--AQHLVGRHDFTTFRSIHCQA--SSPIR 170 + +++D N A VGRH + + + I+ Sbjct: 160 LLPVN-----------TFSSENIDHLNYLRAKICPIFVGRHQYANYTRHITDELLHTSIK 208 Query: 171 TIDHFDVNSFGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 TI F + + + SF+ QIR + ++ V T DL+ L Sbjct: 209 TISEFTFTDPFDVNGTKYVLFTISGNSFMLNQIRKMIAAVLAVSHHLMTEDDLKDTLTET 268 Query: 226 D---RKECGPLAPPEGLYFDSVEYS 247 + G GL+ D V + Sbjct: 269 RWLLPRLIGT-----GLFLDQVFFE 288 >gi|170583043|ref|XP_001896407.1| tRNA pseudouridine synthase family protein [Brugia malayi] gi|158596407|gb|EDP34752.1| tRNA pseudouridine synthase family protein [Brugia malayi] Length = 234 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 48/207 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R ++ Y G Y G Q+ +++ + KA+ E + +GRTD GV Sbjct: 30 RRIALMFMYFGWEYNGLVEQREIARTVEEEMRKALIKTKLVENWENCSWNRSGRTDKGVS 89 Query: 57 ALRQVAHFDLVREWVP---------------------VILCKALNAYLKISDTISILNLS 95 A +QVA + + K LN+ L I +L + Sbjct: 90 AFKQVASVIVRSNEPEGEGVFWPNVAHASSETAMKGELQYVKMLNSTL--PTNIRVLAWA 147 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V + F AR++ +R+Y Y A + + + E MR A Q LVG HDF Sbjct: 148 PVPRNFSARYNCTQRTYTY---------AFPRT-------NFNIEAMRQACQFLVGEHDF 191 Query: 156 TTFRSIHCQAS----SPIRTIDHFDVN 178 F I + IRTI + D++ Sbjct: 192 RNFCRIDMNKKRVEMNYIRTITYADIS 218 >gi|145606084|ref|XP_370178.2| hypothetical protein MGG_06675 [Magnaporthe oryzae 70-15] gi|145013810|gb|EDJ98451.1| hypothetical protein MGG_06675 [Magnaporthe oryzae 70-15] Length = 694 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 98/362 (27%), Gaps = 120/362 (33%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFL--------------VTGEIVV 44 RY + + Y G Y G + Q +G +I+ + KA+ V ++ Sbjct: 165 TRYIALKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCD 224 Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDT------------ISIL 92 GRTD GV A QV + L K + +++ + Sbjct: 225 YSKCGRTDRGVSAFGQVVALRVKSNKP---LRKKKQSAVQLDQDGSGEAASASTGAVDAA 281 Query: 93 NLSIVDKQ-------------FHARFSAIRRSYLYRIITR------------QAPLA--- 124 +V + A + A + +++ P Sbjct: 282 GAQVVPEDSQPGQEDEQEGEEDDAPYPADKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFS 341 Query: 125 -----LEKGRAWLIPKS--------------------------LDCENMRIAAQHLVGRH 153 E+ + + LD + MR AA+ G H Sbjct: 342 ARHSCHERQYRYFFTQPIFSPVPARLDGVMGYKEPGSTHKDGYLDLDAMREAARLFEGEH 401 Query: 154 DFTTFRSIHC--QASSPIRTIDHFDVNSFGN-------------------------LIEI 186 DF F I Q S+ R I + + Sbjct: 402 DFRNFCKIDASKQISNFKRLIREASIVEVPEAASSLPYLDTPDFRPSGEDSQARPKVYYF 461 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSV 244 V +FL QIR + L LVG + + + L + K P+A L Sbjct: 462 HVRGSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDC 521 Query: 245 EY 246 Y Sbjct: 522 LY 523 >gi|213622913|ref|ZP_03375696.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 91 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 34/81 (41%), Positives = 45/81 (55%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYL 83 HF+ +NA L Sbjct: 71 HFETTALRKDAAWTLGVNANL 91 >gi|84997902|ref|XP_953672.1| tRNA pseudouridine synthase [Theileria annulata] gi|65304669|emb|CAI72994.1| tRNA pseudouridine synthase, putative [Theileria annulata] Length = 478 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 101/343 (29%), Gaps = 100/343 (29%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTG---------EIVV 44 +Y + Y G+GY G+Q+Q +++G++E +F + + Sbjct: 69 TKYVIAFGYLGTGYHGYQKQVEYKTGEMDKVKTVEGTLENCLFRIGAINEAFRNMTHKLQ 128 Query: 45 VHGAGRTDSGVHA----LRQVAHFDLVREWV----------------------------- 71 + RTD GVHA L + ++ Sbjct: 129 MSKCSRTDKGVHAACTYLGGRFNIEMEDVPEDHVPQVNNHSEINNSSKPDTSDNVELQSD 188 Query: 72 -----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR--QAPLA 124 + LNA L + I + V K F AR +R Y Y I Sbjct: 189 GKLSKEEKFVQRLNAAL--PEDIRCFKIQRVTKGFDARSLCSKRKYEYIIPEWLLSKKFV 246 Query: 125 LEKGRAWLIPKSLDC-----------------------------------ENMRIAAQHL 149 L ++L+ + + Sbjct: 247 LPNEEHEKHFRNLEVIFEENTKTKDIIKLSKLNDTLYEVKGGFEETEIEHSRLYEILKLY 306 Query: 150 VGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGS 204 G H+F F + ++ R I + S +++I +V +SFL+ QIR + Sbjct: 307 QGTHNFHNFTVKQKEEINNTSRFIHKISIKSHKIQELEVVKILIVGQSFLYNQIRKMISL 366 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V G +E +L + L P EGL + Sbjct: 367 ALQVYLGIAPKNSVEFSLN-KSHFLNINLVPSEGLILHHPYFD 408 >gi|224007493|ref|XP_002292706.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971568|gb|EED89902.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 437 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 101/322 (31%), Gaps = 83/322 (25%) Query: 3 RYCMIIEYNGSGYFGWQRQKN--------------------GSSIQGSIEKAIFLVTGE- 41 + + Y G + GW+ Q++ S+QG++ + + G+ Sbjct: 120 NLKLTVAYRGLDFCGWEDQRHELYRSDASGAVKQSAVEEEVLPSVQGTLVDILDPLLGKK 179 Query: 42 ---------------------------IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI 74 + + AGRTD+GV A+ QV R + Sbjct: 180 ATHHNDCKHLEQQAKYNPNFQKKTKVMPIEIKVAGRTDTGVSAISQVCRIRTYRTDIGES 239 Query: 75 ------------LCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRII-TRQ 120 + +N ++ + + + I ++ V FH F A R+Y+Y I Sbjct: 240 TNNNTGEGLEKFVQNLVNYEMQQLGEGLRIRDVERVKHDFHPTFDASCRAYIYLIDVNDD 299 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHFDVN- 178 A A+ I + + L G+ D+ + + + T+ H Sbjct: 300 ASDAITPKITRHI-----VPKLNSVLKTLEGKELDYLAMSHGKVKTQTTLCTLLHARAGI 354 Query: 179 ------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD--LEKALQA 224 I I +V FL +R V + G D L L + Sbjct: 355 VEWKCNNDSESPKRKQAICIELVGDRFLRRMVRLLVATALREASGADGCDDNALLNILTS 414 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 DR APP+GL F Y Sbjct: 415 MDRTYRARAAPPDGLIFVGAGY 436 >gi|148683103|gb|EDL15050.1| mCG23338, isoform CRA_a [Mus musculus] Length = 130 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-------------NLIE 185 M+ AAQHL+G HDF+ F+S ++ +RT+ V+ Sbjct: 1 MAAMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWT 60 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDS 243 + ++SFL+ Q+R L VG G T ++ L++QD K +AP GL+ S Sbjct: 61 LEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLFLKS 120 Query: 244 VEYS 247 V Y Sbjct: 121 VLYD 124 >gi|66812718|ref|XP_640538.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4] gi|60468568|gb|EAL66571.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4] Length = 504 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 108/319 (33%), Gaps = 91/319 (28%) Query: 4 YCMIIEYNGSGYF--GWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 M+ Y+G+GY+ G+Q SI+ IEK +F + + + RTD Sbjct: 91 VAMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHSSRTD 150 Query: 53 SGVHALRQVAHFD------LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 GVH+L V + + +N YL +I + + V + F AR Sbjct: 151 KGVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYL--PSSIRLFSACKVSRSFQARKK 208 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG---RHDFTTFRSIH- 162 I RSY Y + + ++ + M Q+ +G H+FT+ R+ + Sbjct: 209 GIERSYNYMVPSE-------------YLNNIKIDEMNKILQNFIGINSYHNFTSKRNTYL 255 Query: 163 ------------------------------------------------CQASSPIRTIDH 174 S+ IR I Sbjct: 256 SNNNNKNHEKDEKDEEDGDEEEEEDDEVEVENSNNNNSNYRLNEKLLFRNNSTNIRNIKS 315 Query: 175 FDVN------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 F V + ++ SF+ QIR VG + G T LE +L++ Sbjct: 316 FYVENEIIEIKGKGWYKFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLKSP-FS 374 Query: 229 ECGPLAPPEGLYFDSVEYS 247 C P APP LY +V++ Sbjct: 375 ICVPTAPPFPLYLFNVKFD 393 >gi|194389944|dbj|BAG60488.1| unnamed protein product [Homo sapiens] Length = 142 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 15/121 (12%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-------------NLIEIR 187 M+ AAQHL+G HDF+ F+S SP+RT+ V+ + Sbjct: 3 AMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLE 62 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVE 245 ++SFL+ Q+R L VG G ++ L++QD K +AP GL+ SV Sbjct: 63 FESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVL 122 Query: 246 Y 246 Y Sbjct: 123 Y 123 >gi|297805092|ref|XP_002870430.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297316266|gb|EFH46689.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 420 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 16/141 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--------FLVTGEIV-----VVHGA 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ + + V A Sbjct: 93 VNFKIVLSYNGTSFDGWQKQPDLHTVQGVVEKSLGGFVDDRKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL QV F R + P+ + A+N S + ++++S V + FH FSA Sbjct: 153 GRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINK--DASGKLRVVSISKVSRSFHPNFSA 210 Query: 108 IRRSYLYRIITRQAPLALEKG 128 R YLY A E G Sbjct: 211 KWRRYLYIFPLDDAESLHESG 231 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 30/76 (39%) Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + D ++ + +VA FL +R V + + L K L+A R+ Sbjct: 334 RLSCSDCVEGRRVMCVELVANRFLRKMVRVLVATSIREAAAGAENDALLKLLEASCRRAT 393 Query: 231 GPLAPPEGLYFDSVEY 246 P AP EGL V Y Sbjct: 394 APPAPSEGLCLFDVGY 409 >gi|242781979|ref|XP_002479909.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500] gi|218720056|gb|EED19475.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500] Length = 621 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 81/277 (29%), Gaps = 64/277 (23%) Query: 27 IQGS-IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI 85 +Q +E +I T E + V A + + LN L Sbjct: 211 VQQVDVEASIVDSTEENIGS------APSVEANETEVDDGWDDIRDELPYIQILNGVL-- 262 Query: 86 SDTISILNLSI-VDKQFHARFSAIRRSYLYRIITRQAPLA-----LEKGRAWL--IPKS- 136 I IL F ARFS R Y Y + A I K Sbjct: 263 PRDIRILAWCPNPPPDFDARFSCRERQYRYFFTQPAFNPVPGELGFLRSAAHHRGIAKKE 322 Query: 137 -----LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDH--------------- 174 LD E MR A + +GRHDF F + Q + R I H Sbjct: 323 LRDGWLDIEAMREACKQYIGRHDFRNFCRVDTSKQIENFERIIYHASIDLVDPNQHPLGF 382 Query: 175 ------------FDVNSFGN----------LIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 D+++ GN + + +FL Q+R V L LVG G Sbjct: 383 VGSKEFQPTRNLVDLDNEGNVNEERPSTPLVYTFTLHGSAFLWHQVRHMVAILFLVGQGV 442 Query: 213 WTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 + + + L RK +A L + Sbjct: 443 EDPSIVSELLDVSKHPRKPTYEMASDAPLVLWDCVFP 479 Score = 45.2 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 32/99 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G+ NG +I+ I KA+ Sbjct: 90 IALKFAYLGQRYNGF-EHANGNITPLPTIEEEIWKALRKTRLIFPTTSSSMELDFNKDDR 148 Query: 38 -----VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV 71 ++ + GRTD GV A QV + Sbjct: 149 ARPFDLSWDGCQYSKCGRTDRGVSAFGQVIGIRVRSARP 187 >gi|242096622|ref|XP_002438801.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor] gi|241917024|gb|EER90168.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor] Length = 318 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 89/228 (39%), Gaps = 30/228 (13%) Query: 48 AGRTDSGVHALRQVAHFDLVREWVPV-ILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 AGRTD GV AL+QV F R+ V + A+N D + L++S V ++FH FS Sbjct: 82 AGRTDKGVTALQQVCSFYTWRKDVKSGDIKDAINE--AAPDKLKPLHVSEVPREFHPNFS 139 Query: 107 AIRRSYLYRIITRQAPLA----------LEKGRAWLIPKSLDCENMRIAAQHLVGR---- 152 A R Y+Y + LE + P+S D + + L G+ Sbjct: 140 AKWRRYMYIFPLDEDANLILGEAHSSKILENSEHNIKPQSFDVAKVDKILKTLAGKTLSY 199 Query: 153 ----HDFTTFRSI---------HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 D RS+ H +A+ + D ++ + +VA FL +R Sbjct: 200 KMFARDTQASRSVGPPTECFMFHSRAAVAKLHYANEDYKEGMMVMCVELVANRFLRKMVR 259 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V + L ++A DR+ P APPEGL V Y Sbjct: 260 VLVATAIREAAAGAGDDALLNLMEATDRRATAPPAPPEGLCLIDVGYE 307 >gi|260655352|ref|ZP_05860840.1| tRNA pseudouridine synthase A [Jonquetella anthropi E3_33 E1] gi|260629800|gb|EEX47994.1| tRNA pseudouridine synthase A [Jonquetella anthropi E3_33 E1] Length = 113 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 + + L GRHDF+ F +P R + G L+ + V +FL + Sbjct: 1 MDLFAAGCRLLEGRHDFSAFCRQSEVPENPWRRLYSVRFRRRGPLVVVAVCGDAFLTNMV 60 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R +G+L V GK + L L+ R APP GL F V Y Sbjct: 61 RIMMGNLDDVSRGKRSLDWLAGLLEGGRRSSSAMTAPPSGLTFWRVGY 108 >gi|146084629|ref|XP_001465060.1| tRNA pseudouridine synthase A-like protein [Leishmania infantum JPCM5] gi|134069156|emb|CAM67303.1| tRNA pseudouridine synthase A-like protein [Leishmania infantum JPCM5] Length = 525 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 32/201 (15%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKN-------GSSIQG--------------SIEKAI 35 M RY + ++Y GS + GW QR +N G++ +E+A+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNSKDAAPAGNTTTAAADYGTGSRHFAKVVLEEAL 189 Query: 36 FLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISI 91 + V V A ++GV R H D+ E IL +A + +++ Sbjct: 190 AVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPLAV 249 Query: 92 LNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 L+ ++ FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ + Sbjct: 250 LSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLME 309 Query: 151 GRHDFTTFRSIHCQASSPIRT 171 G HD+ F + ++ +R Sbjct: 310 GTHDYGFF--ADSKMANALRR 328 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-- 225 IRT+D +V + + I V +SFL QIR+ V +LK G G W +L+ A Q+ Sbjct: 414 TIRTLDKIEVVRQEDEVLIWFVGQSFLRHQIRNMVSALKAGGHGLWDDQELQHAFQSGFE 473 Query: 226 ------DRKECGPLAPPEGLYFDSVEYS 247 R+ P AP GL VEY Sbjct: 474 VSRKKFKRERLSP-APAHGLTLWDVEYP 500 >gi|17544142|ref|NP_500962.1| hypothetical protein Y73B6BL.29 [Caenorhabditis elegans] gi|15375270|gb|AAK95894.1|AC084197_22 Hypothetical protein Y73B6BL.29 [Caenorhabditis elegans] Length = 322 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 98/300 (32%), Gaps = 54/300 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-VTGEIVV----------VHGAGR 50 RY I Y+GS + + G + + + I + G + R Sbjct: 5 RRYLFWIGYDGSKFPEMAKGGTGFGVMDLLNQTISTSIFGSRCEQTPNCSDRLKFSPSSR 64 Query: 51 TDSGVHALRQVAHFDLVREW-----VPVILCKALNAYLKI-----SDTISILNLSIVDKQ 100 TD+ VHA+R + E+ P + ++ ++ I ++ V Sbjct: 65 TDAKVHAIRNSVICQVPLEYAELDKTPETKKAFMTSWKNTIDVANPGSLEIHDVHSVSAG 124 Query: 101 FHARFSAIRRSYLYR------------IITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQ 147 F R S R Y YR I + E+ AW +P + A + Sbjct: 125 FCIRRSVSYRKYTYRMAVCRSWELWESIRQEPSISCFSERDYAWRLPPGFSAHKVLQAGK 184 Query: 148 HLVGRHDFTTFRSIHCQAS-------SPIRTIDHFDVNSFG---------NLIEIRVVAR 191 G +F + + ++ I H ++ + + +VA+ Sbjct: 185 LFEGEQVMGSFFKHTAREKRYEPISPTALKYIFHVGLSKGEAYSMENDIYDYYNVTIVAK 244 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD----RKECGPLAPPEGLYFDSVEYS 247 SF+ QIR + L + T +E L P+APP+GL+ V Y Sbjct: 245 SFVREQIRRMMSCLVNYSYDRIPLTTIEWLLSNPISSNFFDLGIPVAPPQGLFLTDVVYD 304 >gi|331231235|ref|XP_003328281.1| pseudouridine synthase 3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307271|gb|EFP83862.1| pseudouridine synthase 3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 650 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 65/350 (18%), Positives = 105/350 (30%), Gaps = 125/350 (35%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIF---------------------- 36 + ++I Y G + G Q + S+++G + +A+ Sbjct: 162 RKIALMISYQGELHGGLAWQPDVTRLSTVEGELFRALLVARLVEGAGEFEEQEEEDSERW 221 Query: 37 --LVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREW------------------------ 70 LV AGRTD+GV QV + + Sbjct: 222 RGLVDLNKWGYSRAGRTDAGVSGAGQVVSLWVRSQLRSVPAPFGFLPPKKTDSDDGSEEE 281 Query: 71 ------------------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 + +N+ L +++ +L S V F ARFS R Y Sbjct: 282 PRGESAGPKQEQEQEEAEEELQYHTIINSIL--PNSVRVLAWSPVHHDFDARFSCQARHY 339 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIR 170 Y ++P A LD E M AA L+G HDF F I Q + R Sbjct: 340 KYFFSLYESPQA----------PGLDIEAMNRAADRLIGEHDFRNFCKIDPSKQLAHFRR 389 Query: 171 TIDHFDVN----------------------------------------SFGNLIEIRVVA 190 I ++ L + +V Sbjct: 390 KILSAEIKPVLDPHHHHLLLLQQQQLSGPSGSSEKHPHPQIYPDALAPETNPLFVLDLVG 449 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEG 238 +FL+ +R V L L+G GK + +++ L + ++ A EG Sbjct: 450 TAFLYNMVRHIVSVLFLIGSGKEEISVIDRLLYTEPNEQPSIITTASEEG 499 >gi|308477475|ref|XP_003100951.1| hypothetical protein CRE_16900 [Caenorhabditis remanei] gi|308264295|gb|EFP08248.1| hypothetical protein CRE_16900 [Caenorhabditis remanei] Length = 322 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 101/300 (33%), Gaps = 54/300 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-----------GEIVVVHGAGR 50 RY I Y+GS + + G + + + + E + + R Sbjct: 5 RRYLFWIGYDGSKFPEMAKGGTGFGVMDLLNQTVSTSLFGFRNERKPEQHECLKFSPSSR 64 Query: 51 TDSGVHALRQVAHFDLVREW-----VPVILCKALNAYLKI-----SDTISILNLSIVDKQ 100 TD+ VHA+R + E+ P I + + ++ I ++ V Sbjct: 65 TDAKVHAIRNSVICQIPLEYSELDKTPEIKADYMKKWKSTIDAANPGSLVIRDVHSVSAG 124 Query: 101 FHARFSAIRRSYLYRI----------ITRQAPLAL---EKGRAWLIPKSLDCENMRIAAQ 147 F R S R Y YR+ RQ P E+ AW +P E + A + Sbjct: 125 FCIRRSVSYRKYTYRLAVCRSWELWESIRQEPSIACFSERDYAWRLPPGFSPERLLTAGR 184 Query: 148 HLVGRHDFTTFRSIHCQAS-------SPIRTIDHFDVNSFG---------NLIEIRVVAR 191 G +F + S ++ I H +++ + + +VA+ Sbjct: 185 RFEGEQVMGSFFKHTNREKRFEPITPSALKYILHVGLSNGEAYSINNDIYDYYNVTIVAK 244 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD----RKECGPLAPPEGLYFDSVEYS 247 SF+ QIR + L + ++ L P+APP+GL+ V Y Sbjct: 245 SFVREQIRRMMSCLVNYSYDRIPLATVDWLLNNPISSNFFDMGIPIAPPQGLFLTDVVYD 304 >gi|156097182|ref|XP_001614624.1| tRNA pseudouridine synthase [Plasmodium vivax SaI-1] gi|148803498|gb|EDL44897.1| tRNA pseudouridine synthase, putative [Plasmodium vivax] Length = 241 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 18/153 (11%) Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 ++++ V F AR + I R+YLY + + K+ + E M+ + + Sbjct: 37 VIDMRSVPNFFDARLNCIHRTYLY----------------FFMDKNYNFERMKEGCKLFL 80 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVG 209 G HDF+ F ++ RTI F+V ++ SFL+ QIR V +L +G Sbjct: 81 GEHDFSNFCKKRKNSTCFRRTILKFEVRRMDKKFHYFKIKGTSFLYNQIRHMVAALFQLG 140 Query: 210 DGKWTSTDLEKALQA-QDRKECGPLAPPEGLYF 241 G DL L R + +A +GL Sbjct: 141 TGNLEVEDLANMLNNHPCRDKNFKIADEDGLLL 173 >gi|149024844|gb|EDL81341.1| similar to pseudouridylate synthase-like 1, isoform CRA_b [Rattus norvegicus] Length = 127 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 15/121 (12%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-------------NLIEIRV 188 M+ AAQHL+G HDF+ F+S +RT+ V+ + Sbjct: 1 MQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLEF 60 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++SFL+ Q+R L VG G T ++ L++QD K +AP GL+ SV Y Sbjct: 61 ESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAHGLFLKSVLY 120 Query: 247 S 247 Sbjct: 121 D 121 >gi|268536920|ref|XP_002633595.1| Hypothetical protein CBG05472 [Caenorhabditis briggsae] gi|187035020|emb|CAP25947.1| hypothetical protein CBG_05472 [Caenorhabditis briggsae AF16] Length = 322 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 100/300 (33%), Gaps = 54/300 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-----------VTGEIVVVHGAGR 50 RY I Y+GS + + G + + + + + + + R Sbjct: 5 RRYLFWIRYDGSKFPEMAKGGTGFGVMDLLNQTVSQSIFGPRREQHPEQKDKLKFSPSSR 64 Query: 51 TDSGVHALRQVAHFDLVREW-----VPVILCKALNAYLKI-----SDTISILNLSIVDKQ 100 TD+ VHA+R + E+ P + + + I ++ IL+ V Sbjct: 65 TDAKVHAIRSSVICQVPLEFADLDKCPETKIQYMRTWKSIIDAANPGSLEILDAHSVSAG 124 Query: 101 FHARFSAIRRSYLYRIITRQAPLAL-------------EKGRAWLIPKSLDCENMRIAAQ 147 F R S R Y YR+ ++ E+ AW +P E + A + Sbjct: 125 FCIRRSVSYRKYTYRLAVCRSWDLWDTIRQEPSIACFSERDYAWRLPPGFSPERLLRAGK 184 Query: 148 HLVGRHDFTTF-----RSIHCQASSPIRTIDHFDV-----------NSFGNLIEIRVVAR 191 G +F R + SP F V N + + +VA+ Sbjct: 185 IFEGEQVMGSFFKHTNREKRTEPISPSALKYIFYVGLSNGEAYSVENDIYDYYNVTIVAK 244 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD----RKECGPLAPPEGLYFDSVEYS 247 SF+ QIR + L + + + L+ P+APP+GLY V Y Sbjct: 245 SFVREQIRRMISCLVNYSYDRIPLSTVNWLLKNPISSNFYDMGIPVAPPQGLYLTDVVYD 304 >gi|74216027|dbj|BAE23701.1| unnamed protein product [Mus musculus] Length = 347 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 86/255 (33%), Gaps = 52/255 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++ Y+G GY G Q GV A QV Sbjct: 50 RKIVLLMAYSGKGYHGMQ----------------------------------GVSAAGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + W+ + +N++L I IL L V F+++ R+Y Y + T Sbjct: 76 VSL---KVWLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDARTYCYMLPT--F 128 Query: 122 PLALEKGRAWLIPKSLDCENMRI---AAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDV 177 A + L E ++ G H+F F S + S R I Sbjct: 129 AFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYC 188 Query: 178 NSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 I+V +SF+ QIR VG + + G + LE++ + K P Sbjct: 189 EEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW--GEEKVDVP 246 Query: 233 LAPPEGLYFDSVEYS 247 AP GL + V + Sbjct: 247 KAPGLGLVLERVHFE 261 >gi|157868264|ref|XP_001682685.1| tRNA pseudouridine synthase A-like protein [Leishmania major] gi|68126140|emb|CAJ07193.1| tRNA pseudouridine synthase A-like protein [Leishmania major strain Friedlin] Length = 525 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 36/203 (17%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKN-------GSS----------------IQGSIEK 33 M RY + ++Y GS + GW QR +N G++ + +E+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNNKDAAPVGNTATAAADYGAGSRHFAKV--VLEE 187 Query: 34 AIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTI 89 A+ + V V A ++GV R H D+ E IL +A + + Sbjct: 188 ALGVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPL 247 Query: 90 SILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 ++L+ ++ FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ Sbjct: 248 AVLSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARL 307 Query: 149 LVGRHDFTTFRSIHCQASSPIRT 171 + G HD+ F + ++ +R Sbjct: 308 MEGTHDYGFF--ADSKMANALRR 328 Score = 76.8 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 9/88 (10%) Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-- 225 IRT+D +V + + I V +SFL QIR+ V LK G G W +L+ A Q+ Sbjct: 414 TIRTLDKIEVVRQEDEVLIWFVGQSFLRHQIRNMVSVLKAGGHGLWDDQELQHAFQSGFE 473 Query: 226 ------DRKECGPLAPPEGLYFDSVEYS 247 R+ P AP GL VEY Sbjct: 474 VSRKKFKRERLSP-APVHGLTLWDVEYP 500 >gi|48477852|ref|YP_023558.1| tRNA pseudouridine synthase A [Picrophilus torridus DSM 9790] gi|62901313|sp|Q6L0Y7|TRUA_PICTO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|48430500|gb|AAT43365.1| tRNA pseudouridine synthase A [Picrophilus torridus DSM 9790] Length = 251 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 38/246 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+G+ + G+ R + +S++ I + + A RTD V A V Sbjct: 7 MHLLIKYGYDGTKFEGFDRSNSKNSVESVIINVLSEYNITK-NIESAARTDKNVSAAGNV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + P + LN +K + FH+ + + SY+ Sbjct: 66 FYIKTEER--PEKILGILNGNIK-------------NMFFHSYY--LSNSYI------NP 102 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 K ++IP +D ++ +G HDFT F +P+RTI+ + + Sbjct: 103 RYNSMKIYKYIIPYRID-SRLKNNIARFLGTHDFTNFSK--NDYRNPVRTINKIEFEEYN 159 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + +SF+ Q+RS +G + D + LA PE L Sbjct: 160 DFTVVNFYGKSFVWHQLRSIIGFAM------HSDEDPFSI-----KYHNRFLAEPEPLIL 208 Query: 242 DSVEYS 247 + Y Sbjct: 209 YDIIYD 214 >gi|71033963|ref|XP_766623.1| tRNA pseudouridine synthase [Theileria parva strain Muguga] gi|68353580|gb|EAN34340.1| tRNA pseudouridine synthase, putative [Theileria parva] Length = 475 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 99/340 (29%), Gaps = 97/340 (28%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTG---------EIVV 44 +Y + Y G+ Y G+Q+Q +++G++E +F + + Sbjct: 69 TKYVISFGYVGTAYHGYQKQVEYKTGEMDKVKTVEGTLENCLFRIGAINEAFRNMTHKLQ 128 Query: 45 VHGAGRTDSGVHA----LRQVAHFDLVREWV----------------------------- 71 + RTD GVHA L + D+ Sbjct: 129 MSKCSRTDKGVHAACTYLGGRFNIDVEDLSDDVVSQAKNHPSESNGELSNNLESTKDQKL 188 Query: 72 --PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT----------R 119 LN+ L + I + V K F AR +R Y Y I Sbjct: 189 SNEDKFVLRLNSVL--PEDIRCFKIQRVTKGFDARTLCSKRKYEYIIPEWILSKKFVVPN 246 Query: 120 QAPLALEKGRAWLIPKSL---------------------------DCENMRIAAQHLVGR 152 + L + ++L D + + G Sbjct: 247 EDHENLFRNLELFFEENLKTRDTIKLSKLNESLYEVKGEYEKTEIDHKRLEEILNFYQGT 306 Query: 153 HDFTTFR-SIHCQASSPIRTIDHFDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKL 207 H F F ++ R I + S ++++I +V +SFL+ QIR + Sbjct: 307 HSFHNFTVKQKEDINNSSRFIHKIYIKSDKLQELDVVKILIVGQSFLYNQIRKMISLALQ 366 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V LE +L + L P EGL + Sbjct: 367 VYLKIAPKNSLEFSLN-KSHILNINLVPSEGLILHHPYFD 405 >gi|157822927|ref|NP_001102169.1| tRNA pseudouridine synthase-like 1 [Rattus norvegicus] gi|149024843|gb|EDL81340.1| similar to pseudouridylate synthase-like 1, isoform CRA_a [Rattus norvegicus] Length = 127 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 15/121 (12%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-------------NLIEIRV 188 M+ AAQHL+G HDF+ F+S +RT+ V+ + Sbjct: 1 MQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLEF 60 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++SFL+ Q+R L VG G T ++ L++QD K +AP GL+ SV Y Sbjct: 61 ESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAHGLFLKSVLY 120 Query: 247 S 247 Sbjct: 121 D 121 >gi|322498495|emb|CBZ33568.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 525 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 36/203 (17%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKN-------GSS----------------IQGSIEK 33 M RY + ++Y GS + GW QR +N G++ + +E+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNSKDAAPAGNTATAAADYGTGSRHFAKV--VLEE 187 Query: 34 AIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTI 89 A+ + V V A ++GV R H D+ E IL +A + + Sbjct: 188 ALAVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPL 247 Query: 90 SILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 ++L+ ++ FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ Sbjct: 248 AVLSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARL 307 Query: 149 LVGRHDFTTFRSIHCQASSPIRT 171 + G HD+ F + ++ +R Sbjct: 308 MEGTHDYGFF--ADSKMANALRR 328 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-- 225 IRT+D +V + + I V +SFL QIR+ V +LK G G W +L+ A Q+ Sbjct: 414 TIRTLDKIEVVRQEDEVLIWFVGQSFLRHQIRNMVSALKAGGHGLWDDQELQHAFQSGFE 473 Query: 226 ------DRKECGPLAPPEGLYFDSVEYS 247 R+ P AP GL VEY Sbjct: 474 VSRKKFKRERLSP-APAHGLTLWDVEYP 500 >gi|58699252|ref|ZP_00374050.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58534228|gb|EAL58429.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 100 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 2/101 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQF 101 VAHFD+ +E + A+N +LK S I +VD + Sbjct: 61 VAHFDMEKECELYRIRNAINYHLK-SIPIVCDEHGVVDTDW 100 >gi|322490513|emb|CBZ25774.1| tRNA pseudouridine synthase A-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 525 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 32/201 (15%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKNGSSIQG---------------------SIEKAI 35 M RY + ++Y GS + GW QR +NG + +E+A+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNGKNGASAGSTATAAADYGAGSRHFAKVVLEEAL 189 Query: 36 FLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE--WVPVILCKALNAYLKIS-DTISI 91 + V + A ++GV R H D+ E P + + +L +++ Sbjct: 190 AVALDVPTVSIVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRTTLWLHQRRQPLAV 249 Query: 92 LNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 L+ ++ FHAR + +RR Y YRI+ R AP + G W + + LD M+ A+ + Sbjct: 250 LSCHPCRNQDFHARHNGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLME 309 Query: 151 GRHDFTTFRSIHCQASSPIRT 171 G HD+ F + ++ +R Sbjct: 310 GTHDYGFF--ADSKMANALRR 328 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 9/88 (10%) Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-- 225 IRT+D +V + I I V +SFL QIR+ V LK G G W +L+ A Q+ Sbjct: 414 TIRTLDKIEVVRQEDEILIWFVGQSFLRHQIRNMVSVLKAGGHGLWDDQELQHAFQSGFE 473 Query: 226 ------DRKECGPLAPPEGLYFDSVEYS 247 R+ P AP GL VEY Sbjct: 474 VSRKKFKRERLSP-APVHGLTLWDVEYP 500 >gi|327351094|gb|EGE79951.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ATCC 18188] Length = 718 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 72/229 (31%), Gaps = 63/229 (27%) Query: 82 YLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAPLAL---EKGRA---- 130 + + I +L F ARFS R Y Y P L ++GR Sbjct: 346 NRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQGS 405 Query: 131 ------WLIPKS----LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN 178 + LD E MR A++L+G HDF F + Q ++ +R I H D+ Sbjct: 406 ERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIE 465 Query: 179 ---------------SFGNL-----------------------IEIRVVARSFLHTQIRS 200 FG L I + +FL Q+R Sbjct: 466 LLDPKTKPLSYLGQPGFGPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQVRH 525 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEYS 247 L LVG G + + + L + R+ +A L + Sbjct: 526 LAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVFP 574 Score = 42.9 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 31/116 (26%), Gaps = 42/116 (36%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHG----- 47 M + Y G Y G+ NG +I+ + KA+ + + V G Sbjct: 164 MRFIALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSED 222 Query: 48 ----------------------------AGRTDSGVHALRQVAHFDLVREWVPVIL 75 GRTD GV A QV + + Sbjct: 223 DMGGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRV 278 >gi|239607141|gb|EEQ84128.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ER-3] Length = 664 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 71/229 (31%), Gaps = 63/229 (27%) Query: 82 YLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAPLAL---EKGRA---- 130 + + I +L F ARFS R Y Y P L ++GR Sbjct: 292 NRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQGS 351 Query: 131 ------WLIPKS----LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN 178 + LD E MR A++L+G HDF F + Q ++ +R I H D+ Sbjct: 352 ERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIE 411 Query: 179 --------------------------------------SFGNLIEIRVVARSFLHTQIRS 200 S + I + +FL Q+R Sbjct: 412 LLDPKTKPLSYLGQPGFRPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQVRH 471 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEYS 247 L LVG G + + + L + R+ +A L + Sbjct: 472 LAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVFP 520 Score = 42.9 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 31/116 (26%), Gaps = 42/116 (36%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHG----- 47 M + Y G Y G+ NG +I+ + KA+ + + V G Sbjct: 110 MRFIALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSED 168 Query: 48 ----------------------------AGRTDSGVHALRQVAHFDLVREWVPVIL 75 GRTD GV A QV + + Sbjct: 169 DMGGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRV 224 >gi|261201021|ref|XP_002626911.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081] gi|239593983|gb|EEQ76564.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081] Length = 718 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 71/229 (31%), Gaps = 63/229 (27%) Query: 82 YLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAPLAL---EKGRA---- 130 + + I +L F ARFS R Y Y P L ++GR Sbjct: 346 NRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQGS 405 Query: 131 ------WLIPKS----LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN 178 + LD E MR A++L+G HDF F + Q ++ +R I H D+ Sbjct: 406 ERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIE 465 Query: 179 --------------------------------------SFGNLIEIRVVARSFLHTQIRS 200 S + I + +FL Q+R Sbjct: 466 LLDPKTKPLSYLGQPGFRPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQVRH 525 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEYS 247 L LVG G + + + L + R+ +A L + Sbjct: 526 LAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVFP 574 Score = 42.9 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 31/116 (26%), Gaps = 42/116 (36%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHG----- 47 M + Y G Y G+ NG +I+ + KA+ + + V G Sbjct: 164 MRFIALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSED 222 Query: 48 ----------------------------AGRTDSGVHALRQVAHFDLVREWVPVIL 75 GRTD GV A QV + + Sbjct: 223 DMGGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRV 278 >gi|148693448|gb|EDL25395.1| pseudouridine synthase 3, isoform CRA_a [Mus musculus] Length = 361 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 60/166 (36%), Gaps = 32/166 (19%) Query: 72 PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + LN L I +L + V+ F ARFS + R+Y Y + Sbjct: 38 EIRYTHILNRVL--PADIRVLAWAPVEPSFSARFSCLERTYRY----------------F 79 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFDVN----------- 178 LD M AAQ VG HDF + + RTI V Sbjct: 80 FPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERR 139 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 L + V+ ++FL+ Q+R + L L+G G +++ L Sbjct: 140 QEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 185 >gi|71022667|ref|XP_761563.1| hypothetical protein UM05416.1 [Ustilago maydis 521] gi|46101432|gb|EAK86665.1| hypothetical protein UM05416.1 [Ustilago maydis 521] Length = 615 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 93/313 (29%), Gaps = 76/313 (24%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTD 52 + + Y G GY G Q +I+G I A V V + A RTD Sbjct: 121 RKVAVKFGYCGIGYSGLQINPGVKTIEGDIFDAFCTAGAVSSDNAVNPNKVGLQRAARTD 180 Query: 53 SGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GVHA + L+ + L +N L I I ++ V F+AR S Sbjct: 181 RGVHAAGNLLSLKLILQPQGLKPGETLVDKVNELL--PPFIRIWGVTRVQNGFNARQSCD 238 Query: 109 RRSYLYRIITR----QAP------------------------------------LALEKG 128 R Y Y + T P K Sbjct: 239 SRMYEYLLPTYVFIPPKPGSTMHDMLVRIRQQELARLSESEAHVSTTCLDEIIDHPFWKS 298 Query: 129 RAWLIPKSLDCEN-------------MRIAAQHLVGRHDFTT------FRSIHCQASSPI 169 S+D +R +G H+F FR CQ Sbjct: 299 HGTTSEFSVDMAAKKQYRLTPAHLAKIRSIFNRFLGSHNFYNFTVGKEFRDRSCQRFMKK 358 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 TI + + I+ +SF+ QIR +G L L+G +++ R Sbjct: 359 LTISEPKMIQGVEWLSIKFHGQSFMLHQIRKMIGLLVLIGRTGAAERLVDECF-GPARVH 417 Query: 230 CGPLAPPEGLYFD 242 P AP GL + Sbjct: 418 I-PKAPGLGLLLE 429 >gi|212526856|ref|XP_002143585.1| pseudouridylate synthase 3 [Penicillium marneffei ATCC 18224] gi|210072983|gb|EEA27070.1| pseudouridylate synthase 3 [Penicillium marneffei ATCC 18224] Length = 630 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 73/242 (30%), Gaps = 67/242 (27%) Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVD-KQFHARFSAIRRSYLYRIITRQAPLA 124 + + LN L I IL F ARFS R Y Y T+ A Sbjct: 257 WDDIRDELPYIQVLNGVL--PQDIRILAWCPNPGPDFDARFSCRERQYRYFF-TQPAFNP 313 Query: 125 ------LEKGRAWL--IPKS------LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSP 168 + A I K LD E MR A +H VGRHDF F + Q + Sbjct: 314 IAGELGFLRSAAHHRGIAKKELRDGWLDIEAMREACKHYVGRHDFRNFCRVDTSKQIENF 373 Query: 169 IRTIDHFDVN--------------------------SFGNLI-----------EIRVVAR 191 R I ++ G+ + + Sbjct: 374 ERIIYRASIDLVDPRTNPLGYVGSKDFQPTRNPVDMPNGSNVNEEQPSTPLVYTFTLHGS 433 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL------APPEGLYFDSVE 245 +FL Q+R V L LVG G + + + + L + C P AP L Sbjct: 434 AFLWHQVRHMVAVLFLVGQGVESPSIVPELLDI-SKNPCKPTYEMASDAP---LVLWDCI 489 Query: 246 YS 247 + Sbjct: 490 FP 491 Score = 45.6 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 32/99 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G+ NG +I+ I KA+ Sbjct: 100 IALKFAYLGQRYNGF-EHANGNATPLPTIEEEIWKALRKTRLIFPTTTSPMELSLDRHDR 158 Query: 38 -----VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWV 71 ++ + GRTD GV A QV + Sbjct: 159 TQPFDLSWDGCQYSKCGRTDRGVSAFGQVIGIRVRSARP 197 >gi|295671354|ref|XP_002796224.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] gi|226284357|gb|EEH39923.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] Length = 700 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 68/233 (29%), Gaps = 71/233 (30%) Query: 82 YLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRIIT-----RQAPLALEKG------- 128 + + I +L F ARFS R Y Y PL K Sbjct: 328 NRVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGSDQKSS 387 Query: 129 ----------RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFD 176 R LD E MR A++L+G HDF F I Q ++ +R I H D Sbjct: 388 VSGSSPITELREGW----LDIEAMREGARYLIGTHDFRNFCKIDPSKQITNHVRHIYHAD 443 Query: 177 VN----------------------SFGNL------------------IEIRVVARSFLHT 196 + G L I + +FL Sbjct: 444 IELLDPQTKPLSYLGQPEFQALEARNGELGRNLVSKDSLLSSSNMKIYSITIHGSAFLWH 503 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEYS 247 Q+R L L+G G + + + L + R+ +A L + Sbjct: 504 QVRHLAAILFLIGQGLERPSIIPELLDFEKNPRRPTYEIASDAPLVLWDCIFP 556 >gi|332006581|gb|AED93964.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 471 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 16/136 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-------------VVHGA 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ E V A Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV AL QV F R + P+ + A+N S + ++++S V + FH FSA Sbjct: 153 GRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINK--DASGKLRVVSISKVSRSFHPNFSA 210 Query: 108 IRRSYLYRIITRQAPL 123 R YLY A Sbjct: 211 KWRRYLYIFPLDDAEP 226 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%) Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D ++ + +VA FL +R V + L K L+A R+ P AP Sbjct: 390 DCVEGRRVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAP 449 Query: 236 PEGLYFDSVEY 246 EGL V Y Sbjct: 450 SEGLCLFDVGY 460 >gi|290979041|ref|XP_002672243.1| predicted protein [Naegleria gruberi] gi|284085818|gb|EFC39499.1| predicted protein [Naegleria gruberi] Length = 483 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 105/314 (33%), Gaps = 71/314 (22%) Query: 4 YCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTGE-------------- 41 + + YNG + G Q Q + +I+ + ++ GE Sbjct: 101 FVISFSYNGIPFNGLQIQNGENLVKHPHLLTIEAVLLDILYGSNGESDFEQDETIIRYTK 160 Query: 42 -----IVVVHGAGRTDSGVHALRQVAHFDLV----------REWVPVILCKALN------ 80 + + A RTD GV A+R + ++ LCK LN Sbjct: 161 SKNCKDIRLQRACRTDRGVSAVRNAFACVMTLPNTQNHKDTFKFNNEELCKTLNDRINNH 220 Query: 81 ---AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL 137 L + D I I N+ V +F R YLY + + Sbjct: 221 VRIKNLNLMDQIKIFNIQRVPSRFVLHHWCQFRRYLYVLPLSAL-DLSSRNIITKCNNIF 279 Query: 138 DCE-------NMRIAAQHLVGRHDFTTFR---SIHCQASSP-IRTIDHFDVNSFGNL--I 184 + E + H G H F F +S ++T+ + N G+L + Sbjct: 280 NLETNEQKCQKLNELLGHFEGIHLFHNFTVDAKPGSDSSRRHVKTLKIIEQNLEGDLPHV 339 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWT-----------STDLEKALQAQDRKECGPL 233 I + RSF+ QIR +G++ + G D + L + P+ Sbjct: 340 VIEISGRSFMLHQIRMMIGTVIALMRGMAPNMNTTVQDNTIVNDFFENLFKAQTEVLLPM 399 Query: 234 APPEGLYFDSVEYS 247 AP EGL+ D++++ Sbjct: 400 APSEGLFLDNLDFP 413 >gi|225681814|gb|EEH20098.1| pseudouridylate synthase [Paracoccidioides brasiliensis Pb03] Length = 641 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 71/244 (29%), Gaps = 63/244 (25%) Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYRIIT-----RQ 120 + + L + + I +L F ARFS R Y Y Sbjct: 257 EWDDIADELPYITILNRVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTP 316 Query: 121 APLALEKGRAWLIPKS-------------LDCENMRIAAQHLVGRHDFTTFRSIHC--QA 165 PL K + LD E MR A++L+G HDF F I Q Sbjct: 317 GPLGFLKRGSDQKSSGSDSSPSTELREGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQI 376 Query: 166 SSPIRTIDHFDVN----------------------------------------SFGNLIE 185 ++ +R I H D+ S + Sbjct: 377 TNHVRHIYHADIELLDPQTKPLSYLGQPEFQALEAGNGELDRNLVTKDSLLSSSNMKIYS 436 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDS 243 I + +FL Q+R L L+G G + + + L + R+ +A L Sbjct: 437 ITIHGSAFLWHQVRHLAAILFLIGQGLERPSIIPELLDIEKNPRRPTYEIASDAPLVLWD 496 Query: 244 VEYS 247 + Sbjct: 497 CIFP 500 >gi|154335976|ref|XP_001564224.1| tRNA pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061258|emb|CAM38282.1| tRNA pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 525 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 30/191 (15%) Query: 2 IRYCMIIEYNGSGYFGW----QRQ-------KNGSSIQGS--------------IEKAIF 36 RY + ++Y GS + GW QR G++ G +E+A+ Sbjct: 131 TRYRVDVQYQGSDFDGWYKSVQRTNKKRDAAPAGNTTAGVADYGAGSHHFARVVLEEALA 190 Query: 37 LVTGEI-VVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISIL 92 + V V A ++GV R H D+ E IL ++ + ++IL Sbjct: 191 VALDVPMVGVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRSTLWLHQRRQPLAIL 250 Query: 93 NLSIVDK-QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ + G Sbjct: 251 SCHPCHNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLMEG 310 Query: 152 RHDFTTFRSIH 162 HD+ F Sbjct: 311 THDYGFFADTK 321 Score = 83.3 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA--- 224 +RT+D +V + + I V +SFL QIR+ VG LK G G W +L+ ALQ+ Sbjct: 414 TVRTVDKIEVVRQEDEVLIWFVGQSFLRHQIRNMVGVLKAGGHGLWDDQELQHALQSGFE 473 Query: 225 ----QDRKECGPLAPPEGLYFDSVEYS 247 + ++E P AP GL VEY Sbjct: 474 VSRKKFKRERLPPAPVHGLTLWDVEYP 500 >gi|225560228|gb|EEH08510.1| pseudouridylate synthase [Ajellomyces capsulatus G186AR] Length = 625 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 62/228 (27%) Query: 82 YLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAPLAL---EKGR---AW 131 + + I +L F ARFS R Y Y P L ++GR Sbjct: 266 NRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCL 325 Query: 132 LI----PKS-------LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN 178 P + LD E MR A++L+G HDF F + Q ++ +R I H D+ Sbjct: 326 WEGSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIE 385 Query: 179 ------------SFGNLIEIR-------------------------VVARSFLHTQIRSF 201 + +FL Q+R Sbjct: 386 LLDPKTKPLSYLRQHEFTTFDTENDKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHL 445 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L LVG G + + + L + R+ +A L + Sbjct: 446 AAILFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIFP 493 >gi|81022386|gb|ABB55198.1| tRNA pseudouridine synthase [Enterococcus faecium] Length = 89 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTIS 90 QVA+F E + +N YL I Sbjct: 61 QVANFKTNTEIGLAEMIDFMNRYL--PRDIV 89 >gi|325090241|gb|EGC43551.1| pseudouridylate synthase [Ajellomyces capsulatus H88] Length = 626 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 62/228 (27%) Query: 82 YLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAPLAL---EKGRAWLI- 133 + + I +L F ARFS R Y Y P L ++GR Sbjct: 267 NRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCL 326 Query: 134 ------PKS-------LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN 178 P + LD E MR A++L+G HDF F + Q ++ +R I H D+ Sbjct: 327 GEGSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIE 386 Query: 179 ------------SFGNLIEIR-------------------------VVARSFLHTQIRSF 201 + +FL Q+R Sbjct: 387 LLDPKTKPLSYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHL 446 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L LVG G + + + L + R+ +A L + Sbjct: 447 AAILFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIFP 494 >gi|240278982|gb|EER42488.1| pseudouridylate synthase [Ajellomyces capsulatus H143] Length = 626 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 62/228 (27%) Query: 82 YLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIIT---RQAPLAL---EKGRAWLI- 133 + + I +L F ARFS R Y Y P L ++GR Sbjct: 267 NRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCL 326 Query: 134 ------PKS-------LDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN 178 P + LD E MR A++L+G HDF F + Q ++ +R I H D+ Sbjct: 327 GEGSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIE 386 Query: 179 ------------SFGNLIEIR-------------------------VVARSFLHTQIRSF 201 + +FL Q+R Sbjct: 387 LLDPKTKPLSYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHL 446 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEYS 247 L LVG G + + + L + R+ +A L + Sbjct: 447 AAILFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIFP 494 >gi|168058399|ref|XP_001781196.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667349|gb|EDQ53981.1| predicted protein [Physcomitrella patens subsp. patens] Length = 499 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 23/151 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + +I+ Y G+ Y G QR +I+G +E+A+F V A RTD Sbjct: 57 RKVALILAYCGAAYQGMQRNPGAITIEGELEQALFRADAIAECNFGDMRKVDWMRAARTD 116 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ Q+ LV P L + +N +L I + + V F+A+ +R Y Sbjct: 117 KGVSAIGQIVSARLV--IDPPGLVERVNQHL--PKDIRVFGYTRVTSNFNAKQMCDKRRY 172 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 Y + P+ A D E M+ Sbjct: 173 EYLV-----PVFAFNPHAHH-----DRETMQ 193 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 7/122 (5%) Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDV-----NSFGNLIE 185 + E + VG ++ F + I + S R I F + Sbjct: 311 FVFDDAKLERLNEILGKYVGTRNYHNFTARIKPEDPSAKRYIISFTAGKVIEVQGMQFVP 370 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 VV +SF+ QIR +G+ + G + ++ ALQ+++ P+AP GL+ D Sbjct: 371 CTVVGQSFMLHQIRKMIGTAIAIMRGCVPDSIIDFALQSKN-DVNTPMAPELGLFLDECF 429 Query: 246 YS 247 YS Sbjct: 430 YS 431 >gi|313223491|emb|CBY41917.1| unnamed protein product [Oikopleura dioica] Length = 281 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 38/201 (18%) Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 + GVHA+ V + + + N+++ ++ F A Sbjct: 27 EKGVHAVNNVISLFVNSRLSEDEINE---------------NVTVGERNFVA-------- 63 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 II RQ P + I LD E M+ AA +L+G HDF F + + +R Sbjct: 64 ----IINRQLPDDI------WITSGLDVELMKEAASYLIGEHDFRNFSQAQLERQNTVRV 113 Query: 172 IDHFDVNSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-- 226 D+ N + + A FL+ QIR + L LVG+ ST +++ L + Sbjct: 114 CFAADIKQVPNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLDVEKYP 173 Query: 227 RKECGPLAPPEGLYFDSVEYS 247 R+ A P+GL EY Sbjct: 174 RRPSYKYANPDGLVLIDCEYE 194 >gi|254168636|ref|ZP_04875479.1| tRNA pseudouridine synthase family [Aciduliprofundum boonei T469] gi|197622470|gb|EDY35042.1| tRNA pseudouridine synthase family [Aciduliprofundum boonei T469] Length = 225 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 82/215 (38%), Gaps = 35/215 (16%) Query: 33 KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 KA+ + + + A RTD GV AL V L LNA LK I Sbjct: 2 KALESMGIK--NLKSASRTDRGVSALGNVIWIKTD--IDGKELIGRLNANLK-----HIY 52 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 S + + R+ A R Y Y ++ D + ++ AA G Sbjct: 53 FHSFANLDINPRY-ARIRWYRYHLLDMGQ----------------DMDRLKEAAMIFQGE 95 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 HDF F + + + I DVN G++I I R++L IR V +++ GK Sbjct: 96 HDFRNFTRVR---KNTVIEIKKIDVNKRGSIITIDFYGRNYLWNLIRRIVAAMEAYSLGK 152 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ RK G +APPE L ++Y Sbjct: 153 EFGQEIFTI-----RKNFG-IAPPEPLILMDIQYD 181 >gi|325190643|emb|CCA25138.1| ubiquitin fusion degradation protein putative [Albugo laibachii Nc14] Length = 585 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 102/317 (32%), Gaps = 85/317 (26%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 R ++ YNGS Y G Q N +I+ I KA++ + + + RTD Sbjct: 78 RRVAIVAGYNGSDYHGVQLNPNVPTIEDEIRKAMYHIGALRASNFQDLNKIDWSRSSRTD 137 Query: 53 SGVHALRQVAHFDL---VREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHAR 104 GVHA V L PV L +ALN L I I +++ V F+AR Sbjct: 138 KGVHASTIVFAGKLLLNEDVIDPVTGRVRGLTRALNENL--PPNIRIFSVTRVCNSFNAR 195 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI-------AAQHLVGRHDFTT 157 R Y Y + PLA + M + A + G HDF Sbjct: 196 TECALREYEYFL-----PLAFLSASCITENRQKMRGQMNVMVQGFLSALEQYEGIHDFHN 250 Query: 158 FRSIH----------------------------------CQASSPIRTIDHFD------- 176 + +SP T F Sbjct: 251 YTRSRSHFYKLHEKKNQKFLERKSAAAHGDTLSDSLGGNSDLTSPFDTASKFRPRLPRHR 310 Query: 177 ---VNSFGNLIE---------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 G+LIE + + ++FL QIR +G +ST E +L Sbjct: 311 RAVYQCRGSLIEDFYGEPYVKVHITGQAFLLHQIRCMIGGAISFATDAISSTVFEASLYT 370 Query: 225 QDRKECGPLAPPEGLYF 241 D+ P+AP EGL Sbjct: 371 -DQIVRIPIAPAEGLLL 386 >gi|224011898|ref|XP_002294602.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969622|gb|EED87962.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 394 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 44/202 (21%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQA------PLALEKGRAWLIPKSLDCENM 142 IS +++ V F AR+SA + Y+Y I + P + AWLI +SLD E M Sbjct: 191 ISAFSVTPVPLTFDARYSAKWKRYIYYICSGINNGETVQPFVWSR-YAWLIRESLDYEGM 249 Query: 143 RIAAQHLVG-RHDFTTFRSI-HCQASSPIRTID-----------------HFDVNSFGNL 183 AA+ L G H++ I + + RT+ + + N Sbjct: 250 VDAAKMLSGEEHNYEWMCVIQEGELRNTRRTVHLNIETVPVKVNGNDTMVPYFLQQNENS 309 Query: 184 IEIRVVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--------QAQDRK----- 228 + +VVA S FL+ +R VG L +G + T L++ + + DR+ Sbjct: 310 VVYKVVATSDFFLYKMVRRIVGLLVAIGKKQADLTTLKRCIGVYDKYGAASDDREGERMK 369 Query: 229 ---ECGPLAPPEGLYFDSVEYS 247 + AP +GL D +EY Sbjct: 370 IPVKLLETAPAKGLCLDHIEYD 391 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQV 61 R+ + + ++G+ Y G+Q Q ++IQ IE + + V V G GRTD+GVHA V Sbjct: 39 RFAIRLSFDGTTYSGFQSQPYQNTIQDQIEHRLRNLLKRDTVRVIGWGRTDAGVHAKGAV 98 Query: 62 AHFDLVREWVPVILCKA 78 DL + V +L + Sbjct: 99 VTVDLWGKEVMELLTRR 115 >gi|224011902|ref|XP_002294604.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969624|gb|EED87964.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 394 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 44/202 (21%) Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQA------PLALEKGRAWLIPKSLDCENM 142 IS +++ V F AR+SA + Y+Y I + P + AWLI +SLD E M Sbjct: 191 ISAFSVTPVPLTFDARYSAKWKRYIYYICSGINNGETVQPFVWSR-YAWLIRESLDYEGM 249 Query: 143 RIAAQHLVG-RHDFTTFRSI-HCQASSPIRTID-----------------HFDVNSFGNL 183 AA+ L G H++ I + + RT+ + + N Sbjct: 250 VDAAKMLSGEEHNYEWMCVIQEGELRNTRRTVHLNIETVPVKVNGNDTMVPYFLQQNENS 309 Query: 184 IEIRVVARS--FLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--------QAQDRK----- 228 + +VVA S FL+ +R VG L +G + T L++ + + DR Sbjct: 310 VVYKVVATSDFFLYKMVRRIVGLLVAIGKKQADLTTLKRCIGVYDKYGAASDDRDGERMK 369 Query: 229 ---ECGPLAPPEGLYFDSVEYS 247 + AP +GL D +EY Sbjct: 370 IPVKLLETAPAKGLCLDHIEYD 391 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQV 61 R+ + + ++G+ Y G+Q Q ++IQ IE + + V V G GRTD+GVHA V Sbjct: 39 RFAIRLSFDGTTYSGFQSQPYQNTIQDQIEHRLRNLLKRDTVRVIGWGRTDAGVHAKGAV 98 Query: 62 AHFDLVREWVPVILCKA 78 DL + V +L + Sbjct: 99 VTVDLWGKEVMELLTRR 115 >gi|221113814|ref|XP_002153998.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 267 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 67/194 (34%), Gaps = 38/194 (19%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--------VVVHGAGRTDSG 54 R + Y G Y G Q+ + +IE AIF + GRTD G Sbjct: 80 RIALKFLYLGWDYQGLANQE---TTNNTIEDAIFNAMIKAKLIEDRVLCKYSRCGRTDKG 136 Query: 55 VHALRQVAHFDL---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 V A QV ++ + + LN L I +L + V + F ARF Sbjct: 137 VSAFGQVIALNVRSNTLVSEEEDTREEISYVRLLNKIL--PPEIRMLAFARVPQDFDARF 194 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R Y Y + K +D + M AAQ VG DF F Sbjct: 195 DCDTRMYKY----------------FFPAKRMDIKLMDAAAQKFVGEKDFRNFCKFIILT 238 Query: 166 SSPIRTIDHFDVNS 179 S ++++D F + Sbjct: 239 QSWLKSVDLFKIFE 252 >gi|19075416|ref|NP_587916.1| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe 972h-] gi|74676082|sp|O74451|YCG6_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C16C4.06c gi|6855456|emb|CAA20745.2| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe] Length = 413 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 97/288 (33%), Gaps = 55/288 (19%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 ++ Y G+G+ G Q N +IQ ++ +A V + + + + A RTD GVH Sbjct: 41 CVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAARTDKGVH 100 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A+ V ++ + +N L I + ++ F R Y Y + Sbjct: 101 AIVNVLGLKVLDNQPLPHVVNLVNDIL--PPCIRVWKMARTFNSFSPHTVCDSRVYEYWL 158 Query: 117 ITR----QAPLALEKG-------RAWLIPKSL-------------------------DCE 140 P LE +A+ I ++L + Sbjct: 159 PVSSLLTPRPCTLEAYVIAKASEKAFPINETLSHLANLSKQDCVANSLSEPFRLSKPKLD 218 Query: 141 NMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNS------FGNLIEIRVVARSF 193 ++ A G H F ++ + +S R + V++ +++ +SF Sbjct: 219 FLKHACTMFRGTHRFHSYTTEKGFSDASSRRFLLDVRVDNLHIDKLNRQWVKLIFHGQSF 278 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + QIR VG L + W + L R P AP E L Sbjct: 279 MKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIRI-PRAPAEFLLL 325 >gi|207093371|ref|ZP_03241158.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_AG0C1] Length = 120 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESAL-NALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-TR 119 V F + W L L L I + L K FHARF A +R Y Y + Sbjct: 60 VLSFHAPKHWNASKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRVYRYLLTKNL 115 Query: 120 QAPL 123 + P Sbjct: 116 KTPF 119 >gi|72390962|ref|XP_845775.1| pseudouridylate synthase I [Trypanosoma brucei TREU927] gi|62175816|gb|AAX69943.1| pseudouridylate synthase I, putative [Trypanosoma brucei] gi|70802311|gb|AAZ12216.1| pseudouridylate synthase I, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 618 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 117/353 (33%), Gaps = 116/353 (32%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y G+ + G Q Q + + ++G + +A+ V+GE + RT Sbjct: 26 LCVMYCGTAFRGLQLQAHAPTHHTVEGVLIQALKDAGIVDGVQRGRVSGEEHHFARSCRT 85 Query: 52 DSGVHALRQVAHFDLVREWV-----PVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + + L + LNA+L T+ + ++ V F RF Sbjct: 86 DRGVHAVRNLVCLFVPNSKLEAAGGCDRLPQLLNAHL--PSTVRVERVTTVMGDFIPRFC 143 Query: 107 AIRRSYLYRIIT--------------RQAPLALEKGRAW--------LIPKSLD--CENM 142 + R Y Y I + P A+E R L P D + Sbjct: 144 CVSRIYRYMIPVYALLSPCSSWNEFYAEFPQAVETLRCRAQGGSFIDLCPNEEDKLLAAL 203 Query: 143 R--------IAAQHLVGRHDFTTFRSIHCQA--------------SSPIRTIDHFDVNS- 179 R + A H+VG H F F + + ++ +RT+ ++ Sbjct: 204 RDVVSRGNGLLAHHVVGTHRFHNFSASPGERYGHGWNRKVVMPNDNTSVRTVMRCEIAPR 263 Query: 180 -----------------------FGN-----------------------LIEIRVVARSF 193 G+ + ++ RSF Sbjct: 264 LFLFPQETIGPTRSEYAKSLKIFEGDTAAEGERVVAVSERTFPETALLPYLLFQIEGRSF 323 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L IR VG + V G + +++ L A +R PLAP LY Y Sbjct: 324 LFNMIRKIVGLIIAVLRGAR-ESLMQETLSA-ERHALCPLAPGSFLYLFHSFY 374 >gi|302781376|ref|XP_002972462.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii] gi|300159929|gb|EFJ26548.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii] Length = 428 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 107/332 (32%), Gaps = 101/332 (30%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + + Y G+ Y G Q Q+ S++ +E+AI+ G + V + R Sbjct: 3 NVAIWVGYVGTDYKGLQIQRGVAGIHSVENELEEAIYKAGGISEENYRHLDKVRWKRSSR 62 Query: 51 TDSGVHALRQVAHFDLV-------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 TD GVH+L V L + + + A NAYL ISI + V K F A Sbjct: 63 TDKGVHSLCTVVTMKLEVAVNSWLNDVDGIKIADAFNAYL--PANISIFGVVPVTKSFDA 120 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFT----- 156 R S R+ Y A + + + + +D ++ R + L GRH F Sbjct: 121 RRSCYSRT--YDYYFPAACIGINNESS---SEDVDQRIQDFRRTLKSLEGRHAFHNYTVR 175 Query: 157 ------------------------------TFRSIHCQASSP----------IRTIDHFD 176 +F+ H + +P R D Sbjct: 176 RLYRKSQRRGTYSPSRNLIADEESSEDEEPSFKDTHDEQDNPAADIGEERGAGRRAYWLD 235 Query: 177 VNSFG---------------------------NLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + G +++ IRV SF+ QIR VG+ V Sbjct: 236 ESEEGKDPVKASHFRNVAKCTCEGPEKLNCPSSVVRIRVTGESFMVHQIRKMVGTAIAVF 295 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + PLAPP GL Sbjct: 296 RHVLPEDAIP-VSTCRHARVVLPLAPPHGLVL 326 >gi|19074166|ref|NP_584772.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1] gi|19068808|emb|CAD25276.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1] Length = 345 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 84/250 (33%), Gaps = 45/250 (18%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 R +++ Y+GS Y G Q K+ +++ I + + + + + + RTD Sbjct: 4 RVGLLVGYDGSRYHGLQFNKDLDTVEKKIVECLLRMDAISERNAGDPRKIHIKSSSRTDK 63 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA + + P L L L + I + ++ + K AI R+Y Sbjct: 64 GVHAALNLVSVKIELGVSPE-LVSGLRELLSK-EGIHLYDIVRLTKSIVPSKQAISRTYE 121 Query: 114 YRIIT----------------------------RQAPLALEKGRAWLIPKSLDCENMRIA 145 Y + T R P ++ D Sbjct: 122 YIVPTYFLAEGDFSREVEVLSQGDEECRGDRIGRVYPESMIDSVVGYTSSEDDTRVFSTI 181 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRS 200 Q VG DF F ++ + S R I V+ ++I + +SFL QIR Sbjct: 182 LQKYVGTKDFHNFTKLNNEKGST-RYIKSIIVSDTYTDNGVEYVKISITGQSFLLHQIRK 240 Query: 201 FVGSLKLVGD 210 V L+ Sbjct: 241 MVLFAVLLCR 250 >gi|301105176|ref|XP_002901672.1| ubiquitin fusion degradation protein, putative [Phytophthora infestans T30-4] gi|262100676|gb|EEY58728.1| ubiquitin fusion degradation protein, putative [Phytophthora infestans T30-4] Length = 840 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 99/318 (31%), Gaps = 96/318 (30%) Query: 12 GSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVA 62 G+GY G Q N +I+ I AIF + + RTD GVHA V Sbjct: 2 GTGYHGLQLNDNVKTIEDDIRNAIFQAGAMRESNFEDLGKIDWARSSRTDKGVHAGCIVF 61 Query: 63 H----FDLVREWVP-----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 D + P L +ALNA L + I + + + V K+F AR + + R Y Sbjct: 62 SGKLLIDEENKVDPISGRVHELKEALNASL--PENIRVFSCTRVSKRFSARKNCVLREYE 119 Query: 114 YRIITRQAPLALEKGRAWLIP-KSLD----CENMRIAAQHLVGRHDFTT-------FRSI 161 Y + PL+ +G + D A + G HDF F + Sbjct: 120 YFM-----PLSFLRGSLIGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKV 174 Query: 162 HCQASSP----------------------------------------------------- 168 + Sbjct: 175 QAKKKHYKAHYRRSVAESDDAGVEDNDEDAEEESGIDDYSEESSQFEDEEELTRKLLPRH 234 Query: 169 IRTIDHFDVNSFGNLI-----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 R+I + + I +V ++FL QIR VG V + + + AL Sbjct: 235 RRSIYSCSGSLVPDFCGEPHLRIHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALL 294 Query: 224 AQDRKECGPLAPPEGLYF 241 +R P+AP EGL Sbjct: 295 T-NRIVRVPIAPAEGLVL 311 >gi|170586438|ref|XP_001897986.1| tRNA pseudouridine synthase family protein [Brugia malayi] gi|158594381|gb|EDP32965.1| tRNA pseudouridine synthase family protein [Brugia malayi] Length = 225 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 14/169 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSG 54 Y +++ Y G Y G Q QK+ +I+G + KA+ + A RTD Sbjct: 29 YALLLAYQGKKYNGMQVQKDFPTIEGELFKAMAKCGYICENDVFSPVRFAFQRAARTDRS 88 Query: 55 VHALRQVAHFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L E L A LN +L + I +L + + F A + +R+ Sbjct: 89 VSAARQMCSMRLAPENHEYFLKTATDKLNTHL--PEEIRVLGVRRATRSFKAHKNCDKRT 146 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 Y Y + T A E + + G H+F + S Sbjct: 147 YSYTLPTYAFARADELTTSGFRMSETSIAELNDLLALYKGTHNFFNYTS 195 >gi|323449394|gb|EGB05282.1| hypothetical protein AURANDRAFT_12283 [Aureococcus anophagefferens] Length = 239 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 85/236 (36%), Gaps = 35/236 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + +++ Y G+ Y+G Q+Q + +I+ ++++A+ + A Sbjct: 6 RKLALLLGYRGANYYGLQKQSKESDLPTIELALQEALNRAGAVHEGNQGDLSKIGWSRAA 65 Query: 50 RTDSGVHALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD V A RQV L L + LN L D I + + V K F+ + S Sbjct: 66 RTDKRVSAARQVVSAKLEVENDDVPALLERLNGEL--PDDIKVFDAVRVIKGFNCKQSCD 123 Query: 109 RRSYLYRIIT---------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 RR Y Y + T A A+ + A E +R VG + F Sbjct: 124 RRHYTYLLPTFLLAPDEAIDAAFDAVAQRLAPHRAAPTLLERLRGFLAAYVGTRKYHNFT 183 Query: 160 -SIHCQASSPIRTIDHF----------DVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 + + R I F D +++ VV +SFL IR V Sbjct: 184 NKLKPTDMAAQRFIVSFTADDPTYPSGDAADGAEWVKLDVVGQSFLMHMIRKMVAV 239 >gi|3047089|gb|AAC13601.1| contains similarity to pseudouridylate synthases [Arabidopsis thaliana] gi|10178103|dbj|BAB11490.1| unnamed protein product [Arabidopsis thaliana] Length = 364 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 91/299 (30%), Gaps = 92/299 (30%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-------------VVHGA 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ E V A Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GRTD GV AL Q V + FH FSA Sbjct: 153 GRTDKGVSALNQ------------------------------------VSRSFHPNFSAK 176 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC----- 163 R YLY A L K D + L S Sbjct: 177 WRRYLYIFPLDDAE-PLRKSGENHENFIFDENKKKQRNGLLSEEIAEEVIMSEDDELEIE 235 Query: 164 QASSPIRTIDH---FDVNSFGNLIEIRVVAR----------------------SFLHT-- 196 + S+ + ++ F V+ L++ + + F++ Sbjct: 236 ETSNALEVVEKPSDFSVSKVDQLLQ-HLQGKVLSYKMFARDTKAARNEGPPTECFMYHAR 294 Query: 197 ---------QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R V + L K L+A R+ P AP EGL V Y Sbjct: 295 AAEIRLSSSMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAPSEGLCLFDVGY 353 >gi|71416935|ref|XP_810423.1| tRNA pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70874950|gb|EAN88572.1| tRNA pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 608 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 44/204 (21%) Query: 2 IRYCMIIEYNGSGYFGW----QRQ-------KNGSSI-----------QG---------- 29 RY + ++Y GS + GW RQ +G ++ Q Sbjct: 207 TRYRVDVQYQGSDFDGWWKSTSRQLYRRETLPDG-TVRRVPLTPDTTDQEDSSAKKTMSS 265 Query: 30 ------SIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVREW---VPVILCKAL 79 +E+A+ + V V + GV R HFD+ I+ +A Sbjct: 266 RYHARTVLEEALAVALDVHTVKVVAGVIPEVGVSVRRLCCHFDVPSHIELQPRTIIQRAT 325 Query: 80 NAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 K +++L+ ++ FHAR S +RR Y+YRI+ R AP + G W + + LD Sbjct: 326 MWLEKRQQPLAVLSCQRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAGLQWHVDRHLD 385 Query: 139 CENMRIAAQHLVGRHDFTTFRSIH 162 M+ A+ L G DF F Sbjct: 386 VPRMQRFAKALEGTKDFGYFADPK 409 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 9/104 (8%) Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 G H +R+ IRTID +V + + I V +SFL QIR+ V LK G Sbjct: 482 GAHSREYYRA--STNLPTIRTIDRLEVVRQDDEVLIWFVGKSFLRHQIRNMVSLLKAAGH 539 Query: 211 GKWTSTDLEKALQA-------QDRKECGPLAPPEGLYFDSVEYS 247 G W +L++ALQ+ + ++E P AP GL VEY Sbjct: 540 GLWNELELQQALQSGFEPSRRRFKRERFPPAPVYGLTLWDVEYP 583 >gi|207108295|ref|ZP_03242457.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_CA4C1] Length = 122 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESAL-NALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V F + W L L L I + L K FHARF A +R Y Y + Sbjct: 60 VLSFHAPKHWNASKLFYYLAPKLAPH--IVLKKLEE--KNFHARFDAQKRVYRYLLT 112 >gi|315304866|ref|ZP_07875006.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] gi|313626765|gb|EFR95758.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] Length = 83 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 167 SPIRTIDHFDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 S +RT+ D N + I FL+ +R G+L G G+ + D+ KAL A+ Sbjct: 1 SKVRTLYSIDFYEEDNETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAR 60 Query: 226 DR-KECGPLAPPEGLYFDSVEYS 247 DR K APP+GLY V+Y Sbjct: 61 DRQKLISKTAPPQGLYLWRVDYE 83 >gi|145529301|ref|XP_001450439.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418050|emb|CAK83042.1| unnamed protein product [Paramecium tetraurelia] Length = 297 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 43/234 (18%) Query: 35 IFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV-----------------REWVPVILCK 77 + + + + V RTD GVHAL V L +L + Sbjct: 29 LNADSIKKIGVSRGARTDRGVHALCNVVSLKLQIDQKYCSSMTNNKLVDKWNIDWDLLIQ 88 Query: 78 ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL 137 LN+ L I + + V + F+ + A +R Y Y +P Sbjct: 89 ELNSQL--PSDIKVNAIKHVTQSFNVKHQADQRMYNYI-----SPSFSTVDYV------- 134 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS----FGNLIEIRVVARS 192 + +G H+F + S S R I F V + N ++ ++ S Sbjct: 135 -----QNICNQYLGTHNFHNYTSKKEYNDPSSKRFIQDFRVQNLNFHNENYLKFTILGNS 189 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 F++ QIR +G++ + K + ++ Q +AP +GLY +++ Sbjct: 190 FMYHQIRKIIGTIYQIVQEKKDLSFIQDTFSQQQHSL--YIAPQQGLYLREIKF 241 >gi|4220415|gb|AAD12460.1| Homology to pseudouridine synthetase X02743 [Mycoplasma genitalium] Length = 102 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ Y+G + GW Q N ++IQG +E++ L+ G + V G+GRTD GVHA+ Q Sbjct: 1 MARYLGIVSYDGIYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 H D+ E +L + +N L I + L +V+ FHAR Sbjct: 61 TFHVDINGEINLNLLIRKINQ-LIKPHCI-VKTLVLVNDSFHAR 102 >gi|167590068|ref|ZP_02382456.1| tRNA pseudouridine synthase A [Burkholderia ubonensis Bu] Length = 77 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 43/77 (55%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKA 78 HFD + + Sbjct: 61 VHFDTELDRADFSWVRG 77 >gi|167537271|ref|XP_001750305.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771295|gb|EDQ84964.1| predicted protein [Monosiga brevicollis MX1] Length = 1025 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 71/278 (25%), Gaps = 87/278 (31%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 + + Y G Y G Q + +++ + A+ GRTD GV Sbjct: 33 RKVALRFAYLGEHYRGLAFQDHQADTVEEHLFNALQRACLIDDRTSCEFSRCGRTDKGVS 92 Query: 57 ALRQVAHFDL--------------------------VREWVPVILCKALNAYLKISDTIS 90 AL QVA + + + LN L I Sbjct: 93 ALSQVASLYVRTNLEECTSLKPRTEPLPPKKAEAQREKARQEIDYIHVLNRLL--PHDIR 150 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 + + V F Sbjct: 151 VYAWAPVPADF------------------------------------------------- 161 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 D + + H + + + NL I V +FL QIR V L L+G Sbjct: 162 ---DARSCKKAHNFLRGNMTSATFARNTPYYNLCCITVHGSAFLWHQIRCMVSVLFLIGQ 218 Query: 211 GKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 + + + + L + K +AP L EY Sbjct: 219 QLESPSIVSRLLDVVSLPGKPQYDMAPDLPLVLWDCEY 256 >gi|224007503|ref|XP_002292711.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971573|gb|EED89907.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 162 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 20/146 (13%) Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 + +I IL V +F ARFS +R+Y Y + ++LD Sbjct: 3 NNVLPPSIRILGWCPVSPEFSARFSCGQRTYRY----------------FFPRRNLDLSA 46 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQ---ASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 M Q+++GRHDF ++C+ P I+ + +S ++ + +V ++FL Q Sbjct: 47 MAQGLQYMMGRHDFRNLCKMNCEQNEGEHPVIQPTEQSKPSSSRDMCHVEIVGQAFLWHQ 106 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQ 223 IR + L VG T +++ Sbjct: 107 IRCIMSILFYVGRQLETPQIVQQLFD 132 >gi|198426359|ref|XP_002130657.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine isomerase 3) (tRNA pseudouridylate synthase 3) [Ciona intestinalis] Length = 557 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 28/178 (15%) Query: 82 YLKISDTISILNLSIVD-KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE 140 + I +L + V+ ++F AR + R Y Y + + D Sbjct: 259 NRVLPAEIKVLAWAPVENEEFSARKHCLGREYRY----------------YFHRGNADIT 302 Query: 141 NMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGN--------LIEIRVVAR 191 M AA+ G HDF F + + +R I+HF+++ + R++ Sbjct: 303 AMNEAAKLFCGLHDFRNFGKVNVVNCVNYVRRINHFEISFCDEEKGAGPYRMCFARIIGS 362 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--LQAQDRKECGPLAPPEGLYFDSVEYS 247 F++ Q+RS + L L+G G + + ++ +K L P L + Y Sbjct: 363 GFIYHQVRSMMAVLYLIGVGLEKPEIITELFNIEKHPKKPWFGLVKPHALVLFNSIYP 420 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R + + Y G Y G Q +N +I+ + +A+ V + GRTD V Sbjct: 101 RRIALKVAYLGWDYEGLQENENLDDTIERILREALRRVRLVPADRSIYFSRCGRTDKEVS 160 Query: 57 ALRQVAHFDLVR 68 A QV + Sbjct: 161 AFSQVIVVKVRS 172 >gi|261329198|emb|CBH12177.1| pseudouridylate synthase I, putative [Trypanosoma brucei gambiense DAL972] Length = 618 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 116/353 (32%), Gaps = 116/353 (32%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y G+ + G Q Q + + ++G + +A+ V+GE + RT Sbjct: 26 LCVMYCGTAFRGLQLQAHAPTHHTVEGVLIQALKDAGIVDGVQRGRVSGEEHHFARSCRT 85 Query: 52 DSGVHALRQVAHFDLVREWV-----PVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + + L + LNA+L T+ + ++ V F RF Sbjct: 86 DRGVHAVRNLVCLFVPNSKLEAAGGCDRLPQLLNAHL--PSTVRVERVTTVMGDFIPRFC 143 Query: 107 AIRRSYLYRIIT--------------RQAPLALEKGRAW--------LIPKSLD--CENM 142 + R Y Y I + P A+E R L P D + Sbjct: 144 CVSRIYRYMIPVYALLSPCSSWNEFYAEFPQAVETLRCRAQGGSFIDLCPNEEDKLLAAL 203 Query: 143 R--------IAAQHLVGRHDFTTFRSIHCQA--------------SSPIRTIDHFDVNS- 179 R + A H+VG H F F + ++ +RT+ ++ Sbjct: 204 RDVVSRGNGLLAHHVVGTHRFHNFSVSPGERYGHGWNRKVVMPNDNTSVRTVMRCEIAPR 263 Query: 180 -----------------------FGN-----------------------LIEIRVVARSF 193 G+ + ++ RSF Sbjct: 264 LFLFPQEAIGPTRSEYAKSLKIFEGDTAAEGERVVAVSERTFPETALLPYLLFQIEGRSF 323 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L IR VG + V G + +++ L A +R PLAP LY Y Sbjct: 324 LFNMIRKIVGLIIAVLRGAR-ESLMQETLSA-ERHALCPLAPDSFLYLFHSFY 374 >gi|261333810|emb|CBH16805.1| tRNA pseudouridine synthase A-like protein,putative [Trypanosoma brucei gambiense DAL972] Length = 588 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 97/280 (34%), Gaps = 60/280 (21%) Query: 2 IRYCMIIEYNGSGYFGW----QRQK----------------------------------- 22 RY + ++Y G+ + GW RQ Sbjct: 185 TRYRVDVQYQGNDFDGWWKSTTRQLFRREVGLDGSITRVPVAEPGTIGNAAGASRGETMG 244 Query: 23 ---NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVREW---VPVIL 75 + ++ +E+A+ + V V + GV R H D+ ++ Sbjct: 245 SRYHARTV---LEEALAVALDVNTVRVVAGVIPEVGVSVRRLCCHVDVPSHIELQPRTVI 301 Query: 76 CKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +A K ++IL+ ++ FHAR S +RR Y+YRI+ R AP + G W + Sbjct: 302 QRATMWMEKRQQPLAILSYRRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAGLQWHVD 361 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD + M+ A+ L G DF F + ++ +R S G V +F Sbjct: 362 RHLDVDRMKRFAKALEGTKDFGYF--ADPKMANALRR----AAMSPGGFSTGAVTEENFQ 415 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 G V GK +EK DR P Sbjct: 416 PK----ATGESHRVTRGKAPKVTMEKGPSNLDRAAALPTF 451 Score = 89.1 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA--- 224 +RT+D DV + + I V RSFL QIR+ V LK G G W +L++ALQ+ Sbjct: 477 TVRTVDRLDVVRQDDEVLIWFVGRSFLRHQIRNMVSVLKAAGHGLWNDLELQQALQSGFE 536 Query: 225 ----QDRKECGPLAPPEGLYFDSVEYS 247 + ++E P AP GL VEY Sbjct: 537 PSRHRFKRERFPTAPAYGLTLWDVEYP 563 >gi|294621110|ref|ZP_06700301.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291599346|gb|EFF30372.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] Length = 73 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 35/72 (48%) Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +VN + + FL+ IR VG+L +G+G+ + + +DR GP A Sbjct: 2 EVNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAH 61 Query: 236 PEGLYFDSVEYS 247 PEGLY V+Y Sbjct: 62 PEGLYLYEVKYE 73 >gi|242223970|ref|XP_002477524.1| predicted protein [Postia placenta Mad-698-R] gi|220722803|gb|EED77277.1| predicted protein [Postia placenta Mad-698-R] Length = 407 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 85/279 (30%), Gaps = 62/279 (22%) Query: 19 QRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Q +I+G + A+ V V + A RTD+GVHA V L+ Sbjct: 1 QPDPKLRTIEGVLFNALVKVGAVSQDNADDPIKVNLGRAARTDAGVHAAGNVVSMKLITA 60 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY--------------- 114 V + ++ I + N+ V F+A R Y Y Sbjct: 61 IPGVGDLIS-RVNEELPPEIRLWNVLRVQNSFNA----RTRKYTYFFPSYLMIPPKPGSG 115 Query: 115 ---------------RIITRQAP-----LALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 AP L + R + +P E +R A++ G H+ Sbjct: 116 LFQIAQQNDGNELKHIFWNSPAPEATWQDDLRRKRQYRMPPE-QVEALRAASRKFEGSHN 174 Query: 155 FTTFRS-IHCQASSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 F F S +R I + V + + +SF+ Q R + +L L Sbjct: 175 FHNFTVGRDFGDRSCMRHIKSVEIADPVVYGGTEWVSVLFHGQSFMLHQ-RKMMSALVLA 233 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +E+ R P P GL EY Sbjct: 234 CRTGSPPQTIEEM--YGPRTVFIPKMPALGLLL---EYP 267 >gi|71749392|ref|XP_828035.1| tRNA pseudouridine synthase A-like protein [Trypanosoma brucei TREU927] gi|70833419|gb|EAN78923.1| tRNA pseudouridine synthase A-like protein [Trypanosoma brucei] Length = 579 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 97/280 (34%), Gaps = 60/280 (21%) Query: 2 IRYCMIIEYNGSGYFGW----QRQK----------------------------------- 22 RY + ++Y G+ + GW RQ Sbjct: 176 TRYRVDVQYQGNDFDGWWKSTTRQLFRREVGLDGSITRVPVAEPGTIGNAAGVSRGETMG 235 Query: 23 ---NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVREW---VPVIL 75 + ++ +E+A+ + V V + GV R H D+ ++ Sbjct: 236 SRYHARTV---LEEALAVALDVNTVRVVAGVIPEVGVSVRRLCCHVDVPSHIELQPRTVI 292 Query: 76 CKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +A K ++IL+ ++ FHAR S +RR Y+YRI+ R AP + G W + Sbjct: 293 QRATMWMEKRQQPLAILSYRRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAGLQWHVD 352 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD + M+ A+ L G DF F + ++ +R S G V +F Sbjct: 353 RHLDVDRMKRFAKTLEGTKDFGYF--ADPKMANALRR----AAMSPGGFSTGAVTEENFQ 406 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 G V GK +EK DR P Sbjct: 407 PK----ATGESHRVTRGKAPKVTMEKGPSNLDRAAALPTF 442 Score = 89.1 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA--- 224 +RT+D DV + + I V RSFL QIR+ V LK G G W +L++ALQ+ Sbjct: 468 TVRTVDRLDVVRQDDEVLIWFVGRSFLRHQIRNMVSVLKAAGHGLWNDLELQQALQSGFE 527 Query: 225 ----QDRKECGPLAPPEGLYFDSVEYS 247 + ++E P AP GL VEY Sbjct: 528 PSRHRFKRERFPTAPAYGLTLWDVEYP 554 >gi|108743218|dbj|BAE95388.1| pseudouridine synthase [Saccharomyces bayanus] Length = 202 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 22/153 (14%) Query: 75 LCKALNAYLKISDTISILNLS-IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 + LN L D I I + F ARFS R Y Y Sbjct: 4 YVQILNQLL--PDDIRISAVCLRPPPGFDARFSCTNRHYKYV----------------FN 45 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFDVNSFGN-LIEIRVVA 190 K LD M AA + +G +DF F + Q ++ R+I + + +V Sbjct: 46 GKHLDITKMSKAASYFLGENDFRNFCKLDGSKQLTNFKRSIVSAKILPVSDTFYCFDLVG 105 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FL Q+R + L LVG + + L Sbjct: 106 SAFLWHQVRCMMAILFLVGQTHEEPEIVLRLLD 138 >gi|312374395|gb|EFR21957.1| hypothetical protein AND_15974 [Anopheles darlingi] Length = 163 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 14/135 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQR-------Q-KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + + Y G+ + G QR Q K+ ++QG IE+A+ + + + RT Sbjct: 1 MNRYLINLSYIGTRFRGIQRKIDKAAGQFKDPHTVQGVIEEALLRLRPVNEPTLKLSSRT 60 Query: 52 DSGVHALRQVAHFDLVR----EWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + + + +N + + I++ V FHAR S Sbjct: 61 DTGVHALHNTVHVDLQRPNGKPYDEDRITQTINRACERDGHALRIISTIRVPDTFHARLS 120 Query: 107 AIRRSYLYRIITRQA 121 A R+YLYR+ +A Sbjct: 121 AKSRTYLYRLAVLKA 135 >gi|221057031|ref|XP_002259653.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193809725|emb|CAQ40427.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 573 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTIDHFDVNS-FGNLIEIRVV 189 D E M+ ++ +G+H+F F + +P I + +++ N+ + + Sbjct: 442 PCDIEKMKECSKLFIGQHNFEFFCGTLKGTEKERKVNPFCNIYYLELHELRSNIYQFVIQ 501 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL+ IR VG+L VG G D++ AL + + AP +GL V + Sbjct: 502 GDRFLYHMIRIIVGTLLQVGVGLLQYQDVQDALHFRKPLKVKLCAPAQGLCLAKVLFP 559 Score = 83.7 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 52/185 (28%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN----------------------------GSSIQGSIEK 33 ++++Y+G+ Y GW +N ++Q +I Sbjct: 103 TNILLVVDYDGTNYSGWTGVENCSDIYLRATRNYKNEITGKKKITKGDSKYDTVQNTILN 162 Query: 34 AIFLVTG----------------EIVVVHGAGRTDSGVHALRQVAHFDLVREWVP----- 72 + + G + G RTD GVHA V + + P Sbjct: 163 CLLQIHGYGYQVKREEEDMKSNLKAFEFIGVSRTDKGVHAKEYVCQYVSYEKPPPCDGNL 222 Query: 73 VILCKALNAYLKISDTISILNLSIVD-KQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + ALN L I IL + F+ RF+ + + Y Y R LE+ AW Sbjct: 223 HKIKMALNGLLN--KDIRILGVLNAPFPDFNVRFNNLGKIYTYNFDIRIPSQPLERNYAW 280 Query: 132 LIPKS 136 + Sbjct: 281 QLYDD 285 >gi|239735631|gb|ACS12725.1| MIP10620p [Drosophila melanogaster] Length = 341 Score = 98.7 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 27/213 (12%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 130 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 189 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E +A NA L I + + V K F+A+ R+Y Y Sbjct: 190 SAARQVCSVKLPEELD----LEAFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 243 Query: 116 IITRQAPLALEK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-------CQ 164 + T EK + I L + ++ + GR TT + Sbjct: 244 LPTVAFAPFEEKVDDVHDTFRISPEL-LQKVKETLKLYEGRRTSTTSPARKAFWILRPSA 302 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 +S P+R H V NL +R+ R+ T+ Sbjct: 303 SSCPLRAASHSGVPRTSNLSHLRLRVRALCCTR 335 >gi|225459791|ref|XP_002284797.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 558 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 39 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTD 98 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P L + LN+ L I I V F+A+ RR Y Sbjct: 99 KGVSAVGQVVSGRF--YIDPPGLVERLNSNL--PPQIRIFGFKRVTASFNAKKFCDRRRY 154 Query: 113 LYRII 117 +Y I Sbjct: 155 VYLIP 159 Score = 69.5 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 7/114 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFD----VNSFG-NLIEIRVVARSF 193 E H VG H+F F I + S R I FD V G ++ VV +SF Sbjct: 366 ERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSF 425 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + QIR +G + + LE AL +D P AP GLY D +S Sbjct: 426 MLHQIRKMIGLAVAIMRNVAPESLLETALL-KDVNINVPTAPEVGLYLDECFFS 478 >gi|147780612|emb|CAN69118.1| hypothetical protein VITISV_031845 [Vitis vinifera] Length = 559 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 27 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTD 86 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P L + LN+ L I I V F+A+ RR Y Sbjct: 87 KGVSAVGQVVSGRF--YIDPPGLVERLNSNL--PPQIRIFGFKRVTASFNAKKFCDRRRY 142 Query: 113 LYRII 117 +Y I Sbjct: 143 VYLIP 147 Score = 69.5 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 7/114 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFD----VNSFG-NLIEIRVVARSF 193 E H VG H+F F I + S R I FD V G ++ VV +SF Sbjct: 367 ERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSF 426 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + QIR +G + + LE AL +D P AP GLY D +S Sbjct: 427 MLHQIRKMIGLAVAIMRNVAPESLLETALL-KDVNINVPTAPEVGLYLDECFFS 479 >gi|124506245|ref|XP_001351720.1| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] gi|23504649|emb|CAD51527.1| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] Length = 681 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTIDHFDVNS-FGNLIEIRVV 189 D ++ A+ +G H+F FR + + TI DV NL + + Sbjct: 550 PCDINKIKECAKLFIGHHNFECFRGTLKGTEKLRKINTFCTIHFLDVYELKNNLYQFVIQ 609 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ IR VG+L VG G D+ AL + AP +GL + + Sbjct: 610 GDRFLYHMIRIIVGTLVQVGVGLLNVEDVRDALHLCKPLKVKLCAPSQGLCLNKI 664 Score = 73.7 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 61/213 (28%), Gaps = 80/213 (37%) Query: 2 IRYCMIIEYNGSGYFGWQ-----------------------RQKNGS-----SIQGSIEK 33 +I+ Y+G+ Y GW RQKN ++Q +I Sbjct: 106 TNLLLIVNYDGTNYNGWTGLENSSEVYLNALQNYKNKKKTERQKNIERKKYSTVQNNILD 165 Query: 34 AIFLVTG--------------------------------------------EIVVVHGAG 49 I + G + G Sbjct: 166 CILKLHGYKYIHNNNNNEHICNSYKVGDTDNYNNAHHNDYNQNNVNGIINNKPFEFIGVS 225 Query: 50 RTDSGVHALRQVAHFDLVREWVP-----VILCKALNAYLKISDTISILNLSIVD-KQFHA 103 RTD GVHA + + + P + ++LN+ L I IL + F+ Sbjct: 226 RTDKGVHAKEYICQYISYEKEPPCDGDMEHIKRSLNSLLN--KDIKILAVLKSPHDHFNI 283 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 RF + Y Y + R LE+ AW + Sbjct: 284 RFHNSGKIYTYNLDIRNPSQPLERNYAWQLYDD 316 >gi|108743226|dbj|BAE95392.1| pseudouridine synthase [Saccharomyces bayanus] Length = 215 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 22/153 (14%) Query: 75 LCKALNAYLKISDTISILNLS-IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 + LN L D I I + F ARFS RR Y Y Sbjct: 4 YVQILNQLL--PDDIRISAVCLRPPPGFDARFSCTRRHYKYV----------------FN 45 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFDVNSFGN-LIEIRVVA 190 + LD M AA + +G +DF F + Q + RTI ++ + +V Sbjct: 46 GRHLDITKMSKAASYFLGENDFRNFCKLDGSKQLTKFKRTIVSAEILPVSDTFYCFDLVG 105 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FL Q+R + L LVG + L Sbjct: 106 SAFLWHQVRCMMAILFLVGQTHEEPEIVLCLLD 138 >gi|115750989|ref|XP_001203430.1| PREDICTED: similar to FKSG32, partial [Strongylocentrotus purpuratus] gi|115923548|ref|XP_794710.2| PREDICTED: similar to FKSG32, partial [Strongylocentrotus purpuratus] Length = 224 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 47/182 (25%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ ++++ + +A+ + + GRTD GV A Sbjct: 65 VALKITYLGWDYHGFVVQEDSNNTVEHHLFEALTKTKLIESRQTSNYSRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREW--------------------VPVILCKALNAYLKISDTISILNLSIVD 98 QV DL + L + I ++ + + Sbjct: 125 GQVIAIDLRTNLLQGVGVIQRLDGTAHERTGNTTEEINYPLMLNRVLPSEIRVIAWTPAE 184 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 FHA R+Y Y LD + M A+Q LVG DF F Sbjct: 185 PSFHA------RTYKYFFPAG----------------DLDTKLMNEASQKLVGTFDFRNF 222 Query: 159 RS 160 Sbjct: 223 CK 224 >gi|41615123|ref|NP_963621.1| hypothetical protein NEQ333 [Nanoarchaeum equitans Kin4-M] gi|42559722|sp|P60354|TRUA_NANEQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|40068847|gb|AAR39182.1| NEQ333 [Nanoarchaeum equitans Kin4-M] Length = 209 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 77/207 (37%), Gaps = 36/207 (17%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD V A + ++ + + + +L ++K + Sbjct: 25 SRTDKYVSARENYFYGNIPK---------------VLPKNVILLGEEPINK-------VL 62 Query: 109 RRSYLYRI----------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + Y Y + + + + + + + M+ AA+H +G+ DFT F Sbjct: 63 SKEYKYFLPKDKAIEQISYLHKVGNIIVRKTKIKVKGLPNLDLMKEAAKHFIGKKDFTNF 122 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 +I +A +P+ TI FD+ + +V FL+ +R + + VG + + Sbjct: 123 -TIEREAKNPLCTIIKFDIEERKDYYVFSIVGDRFLYHMVRKIISFIVSVGYKIYPLEYI 181 Query: 219 EKALQAQDRKECGPL-APPEGLYFDSV 244 + ++R P A P+ L+ + Sbjct: 182 DLVF--KERLNPKPKDADPKFLWLWKI 206 >gi|326482502|gb|EGE06512.1| pseudouridylate synthase [Trichophyton equinum CBS 127.97] Length = 440 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 71/275 (25%), Gaps = 107/275 (38%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNYTEVPTIEEELWKALRKTRLIFPTHKNCTEEFSGKDNS 151 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI----------------- 74 + + GRTD GV A QV + Sbjct: 152 PSRPYEIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPADPNPSADLKGGDVMDSVVA 211 Query: 75 -------------------------------LCKALNAYLKISDTISILNLSI-VDKQFH 102 + LN L + I +L + F Sbjct: 212 TESGMADKNTQNGVSDTGAAKGWDDIADELPYIQILNGAL--PEDIRVLAWCPHLPPDFD 269 Query: 103 ARFSAIRRSYLYRIITRQAPLA-----------------LEKGRAWLIPKSLDCENMRIA 145 ARFS +R Y Y L + R LD E MR A Sbjct: 270 ARFSCRQRRYRYFFTQPAFCPTPGARGIVRSPELKDDLSLARPREGW----LDIEAMREA 325 Query: 146 AQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVN 178 AQ+ VG HDF F + Q ++ +R I D+ Sbjct: 326 AQYFVGSHDFRNFCKVDTSKQITNFVRRILRADIE 360 >gi|167948001|ref|ZP_02535075.1| tRNA pseudouridine synthase A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 67 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 38/65 (58%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I I V A +FLH +R+ G L +G GK + E+ LQ +DR++ G APP GLY Sbjct: 1 MIAIEVHANAFLHHMVRNLAGVLMAIGQGKQEVSWAEEILQLRDRRKGGVTAPPHGLYLT 60 Query: 243 SVEYS 247 V+Y Sbjct: 61 KVDYP 65 >gi|70941666|ref|XP_741093.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56519252|emb|CAH76348.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 493 Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTIDHFDVNS-FGNLIEIRVVAR 191 D + ++ ++ +G H+F FR + + I D+ NL + + Sbjct: 364 DIDKIKECSKLFIGYHNFECFRGTVKGTEKQRTINTFCNIHFLDIYKVKDNLYQFIIQGD 423 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL+ IR VG+L VG G D++ AL AP +GL + + Sbjct: 424 RFLYHMIRIIVGALIQVGVGILNIQDVKDALYNCKPLRVKLCAPAQGLCLKKILFP 479 Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 70/203 (34%) Query: 2 IRYCMIIEYNGSGYFGWQ------------------------------------------ 19 ++I+Y+G+ Y GW Sbjct: 30 TNIILVIDYDGTNYNGWTGIENSSPVYLNAVNGFKNVKNSNICKDTVFEQSEDSETSYNS 89 Query: 20 -RQKNGS---SIQGSIEKAIFLVTG----------------EIVVVHGAGRTDSGVHALR 59 + KN + +IQ I + + G + G RTD GVHA Sbjct: 90 LKNKNENKYNTIQNCILNCLLKIHGYGENPNSIIDQKENDSKPFEFIGVSRTDKGVHAKE 149 Query: 60 QVAHFDLVREWVP-----VILCKALNAYLKISDTISILNLSIVD-KQFHARFSAIRRSYL 113 V + ++ P + +LN L I +L + F+ RF + + Y Sbjct: 150 YVCQYISYKKLPPFNGNLEKIKLSLNRLLN--KDIKVLGVFNAPFNSFNVRFHNLGKIYT 207 Query: 114 YRIITRQAPLALEKGRAWLIPKS 136 Y I R+ LEK +W + Sbjct: 208 YNIDLRKPSQPLEKNFSWQLYDD 230 >gi|169806638|ref|XP_001828063.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|161779191|gb|EDQ31215.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 347 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 56/294 (19%), Positives = 100/294 (34%), Gaps = 55/294 (18%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGR 50 M R + Y G Y G Q ++++ + + + + + + + A R Sbjct: 1 MKRKIAFLWGYCGITYSGIQFNNEINTLEKKLIDILCKLQYISEKNAESAQKIKMKSASR 60 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GV A+ + + + + + L + I + N++ V K F SA R Sbjct: 61 TDKGVSAIFN-VTICKINQELTENINQILKNEFSKAGFI-LYNIARVPKTFIPYRSARSR 118 Query: 111 SYLYRIITRQAPLALEKGRAW------------------LIPKSLD-----------CEN 141 Y Y I L K A + D + Sbjct: 119 EYKYFIPIG----VLNKNIAKSQIDIMQSSENYNISIEKFKHDTFDWLNKSTSNTQIIDK 174 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHT 196 + G HDF F + + Q + IR I H NS +E+ + SF+ Sbjct: 175 LNFILNLFHGNHDFHNFTTQNVQG-TTIRYIKHIYANSIKKINGIEYVEVFLHGDSFIMH 233 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEK---ALQAQDRKECGPLAPPEGLYFDSVEYS 247 QIR + + +T +E+ + +++ P AP E LY ++ + Sbjct: 234 QIRKMIAFAIFMCRNYDDNTIIEQYYNIIFSKN-NYYIPKAPSEYLYLYNIHFD 286 >gi|217074404|gb|ACJ85562.1| unknown [Medicago truncatula] Length = 530 Score = 96.8 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A++ + + RTD Sbjct: 54 RKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTD 113 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P LN+ L I I V F A+ RR Y Sbjct: 114 KGVSAVGQVVSGRF--YIDPPGFVDRLNSNL--PSQIRIFGFKRVTASFSAKKFCDRRRY 169 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + R Sbjct: 170 VYLIPVFALDPCCHRDR 186 Score = 77.9 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFD-----VNSFGNLIEIRVVARSF 193 E + VG H+F F I + S R I FD V ++ +V +SF Sbjct: 329 ERFNNILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSF 388 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + QIR +G + + +EKALQ +D P AP GLY D + Sbjct: 389 MLHQIRKMMGLAVAIMRNCAPESLIEKALQ-KDVSITVPTAPEVGLYLDECFF 440 >gi|269862152|ref|XP_002650725.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220065712|gb|EED43331.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 319 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 72/254 (28%), Gaps = 69/254 (27%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 + + I Y+G Y G Q+ NG SI +E A+ + E + GRTD GV A Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALRSTDLYIESNDIVFCGRTDRGVSAAN 124 Query: 60 QVAHFDL-------------------------------------------VREWVPVILC 76 + + +++ L Sbjct: 125 MIISLKIKSILETYSANPNYHRHIETETYDTYQFNKKEYKRYLLNNSDFEIKKHDAKELP 184 Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 L + I + + V F AR + +R Y Y P L Sbjct: 185 YDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTC---PPQLLPKY------- 234 Query: 137 LDCENMRIAAQHLVGRHDFTTFR---SIHCQASSPIRTIDHFDVNSFGNLIE-----IRV 188 + A + + DF F + + ++ + + + I+ + + Sbjct: 235 ------QEAGRIIYKTEDFYNFCTHSKVDANYKFKLSMLEFVSITPYPSQIQKFLCAMNI 288 Query: 189 VARSFLHTQIRSFV 202 A SF R Sbjct: 289 SAYSFPPNMGRKIF 302 >gi|303389002|ref|XP_003072734.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506] gi|303301876|gb|ADM11374.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506] Length = 345 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 79/245 (32%), Gaps = 47/245 (19%) Query: 2 IRYC--MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGR 50 ++ +++ Y+GS Y G Q K +++ I + + + V + + R Sbjct: 1 MKVRAGLLVGYDGSKYHGLQFNKELDTVEKEIIGCLLEMEVISQRNADDPKKVHIKSSSR 60 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA + + + P L L L + I + ++ + K A+ R Sbjct: 61 TDKGVHAALNLVSVKIEADITPE-LISGLRTLLSRKE-IHLYDIIRLTKSTIPSKQAVFR 118 Query: 111 SYLYRII----------------------------TRQAPLALEKGRAWLIPKSLDCENM 142 +Y Y + TR P + D Sbjct: 119 AYEYIVPTFFLAKGDFDKEVEVLRQKDGECRDGRVTRDYPSDMIDSLVGYTSSEDDLRVF 178 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQ 197 Q G DF F ++ + R I V+ + + + +SFL Q Sbjct: 179 EAILQKYTGTKDFHNFTKLNSE-KGTKRYIKSVIVSDPYVNNGIEYVRVSITGQSFLLHQ 237 Query: 198 IRSFV 202 IR + Sbjct: 238 IRKMM 242 >gi|83317781|ref|XP_731310.1| tRNA-pseudouridine synthase I [Plasmodium yoelii yoelii str. 17XNL] gi|23491305|gb|EAA22875.1| tRNA-pseudouridine synthase I [Plasmodium yoelii yoelii] Length = 497 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFR-----SIHCQASSPIRTIDHFDVNS-FGNLIEIRVVAR 191 D + ++ ++ +G H+F FR + + + I D+ NL + + Sbjct: 368 DIDKIKECSKLFIGYHNFECFRGILKGTEKQRTINTFCNIHFLDIYKLKDNLYQFIIQGD 427 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL+ IR VG+L VG G D++ AL + APP+GL + + Sbjct: 428 RFLYHMIRIIVGTLIQVGVGILNFQDVKDALYNSKPLKVKLCAPPQGLCLKKILFP 483 Score = 75.2 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 65/198 (32%) Query: 2 IRYCMIIEYNGSGYFGWQ------------------------RQKN-------------- 23 ++I+Y+G+ Y GW N Sbjct: 28 TNLILVIDYDGTNYKGWTGIENSSSVYLNAVSGFKNIKRSDNYNANIIEKVEDSDYSFNN 87 Query: 24 ----GSSIQGSIEKAIFLVTG---------------EIVVVHGAGRTDSGVHALRQVAHF 64 ++Q I + + G + G RTD GVHA V + Sbjct: 88 LTKKYETVQNCILNCLLKIHGYGENININNYKETNLKPFEFIGVSRTDKGVHAKEYVCQY 147 Query: 65 DLVREWVPV-----ILCKALNAYLKISDTISILNLSIVD-KQFHARFSAIRRSYLYRIIT 118 ++ P + +LN L I +L + F+ R+ + + Y Y + Sbjct: 148 ISYKKLPPFNGNLKKIKLSLNRLLN--KDIKVLGIFNAPFNNFNVRYHNLGKIYTYNVDL 205 Query: 119 RQAPLALEKGRAWLIPKS 136 R+ LE+ +W + Sbjct: 206 RKPSQPLERNLSWQLYDD 223 >gi|299469782|emb|CBN76636.1| tRNA Pseudouridine Synthase [Ectocarpus siliculosus] Length = 677 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 12/126 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 + ++I Y G+ Y G Q K +I+ +E A++L V AGRTD Sbjct: 192 KVALLISYWGNNYQGLQINKGARTIEAELELALYLAGTISKDNFGNPRKVSWSRAGRTDK 251 Query: 54 GVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA QV L + +N YL D I +++ K F +R R Y Sbjct: 252 GVHAAAQVISVKLTYLNDGERETVEKINKYL--PDDIRAVDIRRAPKSFDSRTRCSGRRY 309 Query: 113 LYRIIT 118 Y + T Sbjct: 310 EYIMPT 315 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 139 CENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVN-----SFGNLIEIRVVARS 192 E++R + +G ++ + + +S R I F + I + V +S Sbjct: 502 LEDLRETLKGFLGTKNYHNYTNHKKATDASCKRLITSFTASDPFEHEGMEWIRLTVGGQS 561 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR V S G+ D K+ + +AP +GLY + Y Sbjct: 562 FIMHQIRKMVASTVDRVRGQSNPEDFTKSFLPEKINLG--IAPSDGLYLERPLYE 614 >gi|326493306|dbj|BAJ85114.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 221 Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 69/208 (33%), Gaps = 28/208 (13%) Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 ++ P + ++N D I L +S V ++FH FSA R YLY + + Sbjct: 5 WRKDIQPGDIKDSINE--AAPDKIKSLVVSEVSREFHPNFSAKWRRYLYIFPLDEDAKPI 62 Query: 126 ---------EKGRAWLIPKSLDCENMRIAAQHLVGR--------HDFTTFRSIHCQAS-- 166 + + +S D + + L G+ D RS A Sbjct: 63 SGDELSSMILENPEYKASRSFDVAKVDKIIRQLEGKMLSYKIFARDTQASRSDGPAAECF 122 Query: 167 -----SPIRTIDHFD--VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + + + D ++ I +VA FL +R V + L Sbjct: 123 MFHSRAAVTKLYSADENCKEGATVMCIELVANRFLRKMVRVLVATTIREAAAGANEDALL 182 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEYS 247 + A R+ P AP EGL V Y Sbjct: 183 NLMDATCRRATAPPAPAEGLCLVDVGYE 210 >gi|302806719|ref|XP_002985091.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii] gi|300147301|gb|EFJ13966.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii] Length = 363 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 13/135 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + + Y+G GY G QR K +I+G +E+A+F + A RTD Sbjct: 1 RKIAIFVSYSGYGYQGMQRNKGCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P + +N++L I +L + V F A+ RR Y Sbjct: 61 KGVSAAGQVVSGRF--FVDPPGFVERVNSHL--PKQIRVLGFTRVTGTFSAKNLCDRRRY 116 Query: 113 LYRIITRQAPLALEK 127 Y + A + Sbjct: 117 EYVLPVFALDPASHR 131 Score = 68.7 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 140 ENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 + Q+ VG F F + + S R I ++ + V+ +SF Sbjct: 193 AKLTKILQNYVGTRYFHNFTCRVKPEDPSTQRYITSYEAGEVFTIQGCKFVRCTVIGQSF 252 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + QIR +G V G T E+A + +D K P+AP GL+ D Y Sbjct: 253 MLHQIRKMIGLAVAVMRGDAPETIFERAFR-RDTKIGVPMAPELGLFLDECLY 304 >gi|302809155|ref|XP_002986271.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii] gi|300146130|gb|EFJ12802.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii] Length = 363 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 13/135 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + + Y+G GY G QR K +I+G +E+A+F + A RTD Sbjct: 1 RKIAIFVSYSGYGYQGMQRNKGCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P + +N++L I +L + V F A+ RR Y Sbjct: 61 KGVSAAGQVVSGRF--FVDPPGFVERVNSHL--PKQIRVLGFTRVTGTFSAKNLCDRRRY 116 Query: 113 LYRIITRQAPLALEK 127 Y + A + Sbjct: 117 EYVLPVFALDPASHR 131 Score = 68.7 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 140 ENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 + Q+ VG F F + + S R I ++ + V+ +SF Sbjct: 193 AKLTKILQNYVGTRYFHNFTCRVKPEDPSTQRYITSYEAGEVFTIQGCKFVRCTVIGQSF 252 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + QIR +G V G T E+A + +D K P+AP GL+ D Y Sbjct: 253 MLHQIRKMIGLAVAVMRGDAPETIFERAFR-RDTKIGVPMAPELGLFLDECLY 304 >gi|303285768|ref|XP_003062174.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456585|gb|EEH53886.1| predicted protein [Micromonas pusilla CCMP1545] Length = 554 Score = 95.3 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 59/342 (17%), Positives = 101/342 (29%), Gaps = 99/342 (28%) Query: 4 YCMIIEYNGSGYFGWQR-----------------------------QKNGSSIQGSIEKA 34 Y + Y G + GW S+ ++++A Sbjct: 205 YKAAVAYYGPAFAGWAWLPSDGATDALFRAPDDERGGGAGGGGAEWTPGAHSVVATMQRA 264 Query: 35 IFLVT--GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN------------ 80 + + + + AGRTD GV AL Q F + + P + A+N Sbjct: 265 LNPLFAGDKERPIQCAGRTDKGVSALAQTVSFWTLNDLDPAEIVAAVNEGSPAGRAGALR 324 Query: 81 ----------------AYLKISDTI-------SILNLSI-VDKQFHARFSAIRRSYLYRI 116 ++ I + + V ++FHA F+A R Y+Y + Sbjct: 325 VPSFQSPPSTPFNSASDAFQLHPDIRSYGTTLRVTSAPEKVTERFHATFAATWRRYVYIL 384 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHF 175 + K +D + + L G+ D T F Q + Sbjct: 385 PINRIDRIDGKTGDGDESYDVDPSAVDAMLRKLSGKTVDATAFARDTPQGKPSSCRVKVA 444 Query: 176 DV--------------------------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 ++ + + +VA FL Q+R V + Sbjct: 445 RAFLSRVPSSVGDGDEEIRDEDETPTNPSTHQPVCVVELVADRFLRKQVRVLVATAAREA 504 Query: 210 DGKWTSTDLEKALQ----AQDRKEC-GPLAPPEGLYFDSVEY 246 + TS L + A++R+ P AP GL F V Y Sbjct: 505 NCGATSDVLLALSRAGGSARERRMATAPPAPAVGLVFAGVGY 546 >gi|258574223|ref|XP_002541293.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704] gi|237901559|gb|EEP75960.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704] Length = 578 Score = 94.9 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 63/187 (33%), Gaps = 24/187 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + + RTD Sbjct: 108 RKVAVLLGYSGTGYHGMQMSTKERTIEGEIFPALVAAGAISKANAMDPKKSSFVRCARTD 167 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L L K +N L S I I + +K F R Y Sbjct: 168 KGVHAAGNVISLKL--IIEDPDLVKKVNDIL--SPQIRIWGIEPTNKGFSCYQFCDSRIY 223 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I T P + + ++ AA+ D R + + I Sbjct: 224 EYLIPTHCFIPP--------HPSTFLAKKLQEAAEK---EGDLEAHRKRQEEVLTYWEDI 272 Query: 173 DHFDVNS 179 D+ + Sbjct: 273 DNEYIKP 279 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 8/103 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 + RA+ IP ++ VG +F + + S R I F ++ Sbjct: 343 FKAKRAYRIP-PARLARVQEVLDLYVGTRNFHNYTIQKTFRDPSAKRVIKSFKISKDPII 401 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + ++V +SF+ QIR V L+ + + Sbjct: 402 IGGTEWLSLKVHGQSFMMHQIRKMVAMAALIVRCGSDPQLIAQ 444 >gi|86139957|ref|ZP_01058522.1| tRNA pseudouridine synthase [Roseobacter sp. MED193] gi|85823375|gb|EAQ43585.1| tRNA pseudouridine synthase [Roseobacter sp. MED193] Length = 113 Score = 94.9 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 4/103 (3%) Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF----GNLI 184 +P L MR A+HL+G++ FTTFRS CQA SP++ +D ++ G + Sbjct: 3 HVLRVPPELYVAAMRNGARHLLGKYYFTTFRSRICQAKSPVKALDALEIEEVEGLAGPEL 62 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + ARS L+ Q+RS VG+L+ VG G WT D++ AL+ +DR Sbjct: 63 RFHLSARSLLYNQVRSIVGTLERVGAGSWTPEDVKTALETRDR 105 >gi|320094550|ref|ZP_08026316.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] gi|319978465|gb|EFW10042.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] Length = 94 Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW Q ++QG +E + + + V AGRTD+GVHA QV Sbjct: 16 VRVRIDLAYDGTRFHGWAAQPGLRTVQGELEAVLSTLVRQPVATTVAGRTDAGVHARHQV 75 Query: 62 AHFDLV 67 AH DL Sbjct: 76 AHVDLP 81 >gi|330924858|ref|XP_003300809.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1] gi|311324870|gb|EFQ91095.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1] Length = 631 Score = 94.5 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 26/207 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + A V + V + RTD Sbjct: 107 RKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFNAFVAAGAISKANAVDPKKVSLVRCARTD 166 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +N++L D I + + F + R Y Sbjct: 167 KGVHAAGNVVSLKL--IIEDEDIVDKINSHLT--DQIRVWGIQRTVGSFSCYQACDSRWY 222 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I T P S + + A+ +D +R+ + ++ + Sbjct: 223 EYLIPTHSFLPP--------HPSSFLGKKLEEFAEK---ENDLEGYRARQAEVANFWPEV 271 Query: 173 DHFDVNSFGNLIEIRVV--ARSFLHTQ 197 + + + ++ + + L+ Sbjct: 272 EEKHIKPILDSLDDSIRPLVQEALYNM 298 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 9/111 (8%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVARS 192 ++ A + +G H + + S R I F V + ++V +S Sbjct: 420 ARVQAALDNYLGTHRYHNYTVHKKYNDKSAQRYIKSFQVAPKPIIINDTEWLSLKVHGQS 479 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 F+ QIR VG L +E + + P AP GL + Sbjct: 480 FMMHQIRKMVGMAALTVRCGTNPKIMEDSF--GNNVVRIPKAPGLGLLLER 528 >gi|331244832|ref|XP_003335055.1| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314045|gb|EFP90636.1| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 547 Score = 94.5 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 58/353 (16%), Positives = 89/353 (25%), Gaps = 123/353 (34%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVHAL 58 I Y G GY G Q +I+G++ A V + A RTD+ V A Sbjct: 2 IGYYGRGYQGSQINPGTKTIEGTLFNAFVRAGCITQDNSTHPNKVGLQRAARTDANVSAC 61 Query: 59 RQVAHFDLVREWVP--------------------------------VILCKALNAYLKIS 86 + L+ L K +N +L Sbjct: 62 CNLISLKLILNPPEIGQDKRMDQVEEEGQEDALHRSLIEQHSQTSYYPLIKHINRFL--P 119 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA------------LEKGRA---- 130 + I + V F+ R R Y Y + T L + R Sbjct: 120 SDMKIWEIIRVQNSFNPRSFCDSRVYEYSLPTWLFLPPKPGSPLHQRLMKLNQNRIKKTG 179 Query: 131 ---------------WLIPKS----------------------LDCENMRIAAQHLVGRH 153 W S + ++ G H Sbjct: 180 EEEEDAEKEEDPEANWWNDHSNLLEKDFKSIQAERRGSYRISQMMIARIKSVLDQFRGTH 239 Query: 154 DFTTFRSIHC-QASSPIRTIDHFDVNSFG------------------------NLIEIRV 188 +F + +R + F V+ I I Sbjct: 240 NFHNLTVGKAFTERNAVRIMKDFTVSEPFLVGGSDPTNPKDDDDHQPLENPPTEWISITF 299 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +SF+ QIR +G L LV + + +++ RK P AP GL Sbjct: 300 HGQSFMLHQIRKMIGLLVLVCRTRTPVSIIKQL--YGPRKVSIPKAPGIGLIL 350 >gi|300175270|emb|CBK20581.2| unnamed protein product [Blastocystis hominis] Length = 310 Score = 94.5 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 78/256 (30%), Gaps = 65/256 (25%) Query: 15 YFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVH--------GAGRTDSGVHALRQVAHFD 65 Y G Q S++ + +F++ E V RTD GV A V Sbjct: 12 YSGMQVNDTRQSVEDKLVDCLFMLDKIEPWNVIKSSKFDWERCSRTDKGVSARSIVVSGK 71 Query: 66 L-------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 L + + LN L + I + + + V K F+ + R+Y Y + Sbjct: 72 LMDYDDEFDSSMQNQLAVEQLNQLL--PEDIRVFSYTRVSKSFNPHLNTHTRTYSYYL-- 127 Query: 119 RQAPLALEKGRAWLIPKS--------LDCENMRIAAQHLVGRHDFTTFR----------- 159 L++ ++ S +D + A +G H + Sbjct: 128 -----PLDQYQSSHYAPSRIIELGVHIDTAKFQKALSVFLGTHSMKNYSGSIQYSLLSCS 182 Query: 160 -------------SIHCQASSPIRTIDHFD--------VNSFGNLIEIRVVARSFLHTQI 198 + C+ S + HF + + + SFL+ QI Sbjct: 183 CDYFVVIEIRISVNSTCEPCSCYFHLCHFSNHIAATPLTIGNERYLHVLLNGNSFLYHQI 242 Query: 199 RSFVGSLKLVGDGKWT 214 R +G V G W+ Sbjct: 243 RKMIGGAVAVSCGSWS 258 >gi|2446915|dbj|BAA22474.1| tRNA pseudouridine synthase I [Synechococcus elongatus PCC 6301] Length = 81 Score = 94.5 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/67 (49%), Positives = 41/67 (61%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVH QV Sbjct: 15 QRIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHRAAQV 74 Query: 62 AHFDLVR 68 AHF+ Sbjct: 75 AHFETTS 81 >gi|189209550|ref|XP_001941107.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977200|gb|EDU43826.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 595 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 26/207 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + A V + V + RTD Sbjct: 98 RKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFNAFVAAGAISKANAVDPKKVSLVRCARTD 157 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +N++L D I + + F + R Y Sbjct: 158 KGVHAAGNVVSLKL--IIEDEDIVDKINSHLT--DQIRVWGIQRTVGSFSCYQACDSRWY 213 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I T P S + + A+ +D +R+ + ++ + Sbjct: 214 EYLIPTHSFLPP--------HPSSFLGKKLEEFAEK---ENDLEGYRARQAEVANFWPEV 262 Query: 173 DHFDVNSFGNLIEIRVV--ARSFLHTQ 197 + + + ++ + + L+ Sbjct: 263 EEKHIKPILDSLDDSIRPLVQEALYNM 289 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 9/111 (8%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVARS 192 ++ A + +G H + + S R I F V + ++V +S Sbjct: 411 ARVQAALNNYLGTHRYHNYTVHKKYNDKSAQRYIKSFQVAPKPIIINDTEWLSLKVHGQS 470 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 F+ QIR VG L +E++ + P AP GL + Sbjct: 471 FMMHQIRKMVGMAALTVRCGTNPEIMEESF--GNNVVRIPKAPGLGLLLER 519 >gi|18394855|ref|NP_564112.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|9558589|gb|AAF88152.1|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapiens gi|4455035 and contains tRNA pseudoridine synthase PF|01416 domain. ESTs gb|T76494, gb|W43440 come from this gene [Arabidopsis thaliana] gi|14334544|gb|AAK59680.1| unknown protein [Arabidopsis thaliana] gi|16323470|gb|AAL15229.1| unknown protein [Arabidopsis thaliana] gi|332191845|gb|AEE29966.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 549 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++ + G GY G Q+ +I+G +E+A+F + RTD Sbjct: 58 RKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSARTD 117 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P + LN+ L D I + V F ++ RR Y Sbjct: 118 KGVSAVGQVVSGRF--YVDPPGFVERLNSKL--PDQIRVFGYKRVAPSFSSKKFCDRRRY 173 Query: 113 LYRII 117 +Y I Sbjct: 174 VYLIP 178 Score = 65.6 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 9/114 (7%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFDVNSF-----GNLIEIRVVARS 192 E + VG H+F F + +A+ P R I F+ N+ + ++ VV +S Sbjct: 319 ERFNRILSYYVGSHNFHNF-TTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQS 377 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 F+ QIR +G + + +E + + +D + P+AP GLY D + Sbjct: 378 FMLHQIRKMIGLAVAIMRNYAPESLIEASFK-KDVRINVPMAPEVGLYLDECFF 430 >gi|195370371|ref|XP_002045883.1| GM20625 [Drosophila sechellia] gi|194121623|gb|EDW43666.1| GM20625 [Drosophila sechellia] Length = 248 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 50 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 109 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTI-SILNLSIVDKQFHARF 105 QV DL + P C LN L I + + + + ARF Sbjct: 110 CQVISIDLRSKHPPESQLDPTSLSSEIDYCGLLNRVL--PKNIQCVAWMPLRSSVYSARF 167 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHC 163 + RSY Y + LD MR A LV DF F +H Sbjct: 168 DCVSRSYRY----------------FFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHN 211 Query: 164 QASSPIRTIDHFDVNSFGN 182 ++ +R + V + Sbjct: 212 GVTNYMRNLQSARVEACDE 230 >gi|310791388|gb|EFQ26915.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001] Length = 614 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 24/199 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + K AI + + RTD Sbjct: 124 RKVAVMVGYSGTGYKGMQINNEEKTIEGDLFKAFVAAGAISKANADDHKKSSLVRCARTD 183 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +NA L + I + + + F + R Y Sbjct: 184 KGVHAAGNVISLKL--IIEDEDIVDKINANL--PEQIRVWGIQRTNNSFSCYQTCDSRWY 239 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y + T L P D + + + + F+ R + Sbjct: 240 EYLLPT----------YCLLPPHP-DSWLWKQLVEVAKEKGYYEEFQKKLADVEGYWREV 288 Query: 173 DHFDVNSFGNLIEIRVVAR 191 D D+ ++ A+ Sbjct: 289 DEKDIKPILERLDPETRAK 307 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 9/109 (8%) Query: 142 MRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVN------SFGNLIEIRVVARSFL 194 ++ A G +F + + S R I F VN + ++V +SF+ Sbjct: 402 LQAALSEYCGTINFHNYTVQKSFKDPSAKRHIKSFQVNTQPIQIRDTEWVSLKVHGQSFM 461 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 QIR VG LV + + + P AP GL + Sbjct: 462 MHQIRKMVGMASLVVRCATPLERIRQ--SYGPTRIAIPKAPGLGLLLER 508 >gi|307136307|gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp. melo] Length = 519 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+ +E+A++L + + RTD Sbjct: 55 RKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTD 114 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P LN+ L S I I V F+A+ RR Y Sbjct: 115 KGVSAVGQVVSGRF--YIDPPGFVDRLNSNL--SPQIRIFGYKRVTASFNAKKFCDRRRY 170 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + R Sbjct: 171 VYLIPVFALDPNCHRDR 187 Score = 73.7 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 7/110 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFD-----VNSFGNLIEIRVVARSF 193 +H VG H+F F + + R I FD V ++ VV +SF Sbjct: 325 ARFNRILKHYVGTHNFHNFTTRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSF 384 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + QIR +G + + +EKALQ +D P AP GLY D Sbjct: 385 MLHQIRKMMGLAVAIMRNCAPESLIEKALQ-KDVNINVPTAPEVGLYLDE 433 >gi|325068064|ref|ZP_08126737.1| tRNA pseudouridine synthase A [Actinomyces oris K20] Length = 89 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ +V E V + AGRTD+GVHA Q Sbjct: 7 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALAIVLREPVRLTVAGRTDAGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISD 87 V H D+ P ++ + Sbjct: 67 VVHLDV----SPEAWAALPGRSERLPE 89 >gi|297850446|ref|XP_002893104.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338946|gb|EFH69363.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 557 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++ + G GY G Q+ +I+G +E+A+F + RTD Sbjct: 58 RKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSARTD 117 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P + LN+ L D I + V F ++ RR Y Sbjct: 118 KGVSAVGQVVSGRF--YVDPPGFVERLNSKL--PDQIRVFGYKRVAPSFSSKKLCDRRRY 173 Query: 113 LYRII 117 +Y I Sbjct: 174 VYLIP 178 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 9/114 (7%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFDVNSF-----GNLIEIRVVARS 192 E + VG H+F F + +A+ P R I F+ N+ + ++ VV +S Sbjct: 317 ERFNRILSYYVGSHNFHNF-TTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQS 375 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 F+ QIR +G V + +E A + +D + P+AP GLY D + Sbjct: 376 FMLHQIRKMIGLAVAVMRNYAPESLIETAFK-KDVRINVPMAPEVGLYLDECFF 428 >gi|414485|gb|AAD12372.1| Homology to pseudouridine synthetase X02743 [Mycoplasma genitalium] Length = 116 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 3/117 (2%) Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-GNLIEIRVVA 190 + + LD E ++ A +G+ +F +F S + IRTI + L+ + Sbjct: 1 QLNQQLDLEKLKADATLFLGKKNFLSFSS--SIHTDSIRTISKITIQKETNQLVRLTFFG 58 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL +Q+R V L + K + K + + C AP GLY +V Y Sbjct: 59 SGFLRSQVRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCGLYLKTVVYE 115 >gi|163783824|ref|ZP_02178806.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] gi|159880914|gb|EDP74436.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] Length = 64 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y G+ Y GWQRQ +IQ IE + ++ V ++ +GRTD+GVHAL QVA Sbjct: 4 NYKLTISYLGTNYHGWQRQPKHITIQQVIEDNLKVLVKHPVKLYASGRTDAGVHALGQVA 63 Query: 63 H 63 + Sbjct: 64 N 64 >gi|223998991|ref|XP_002289168.1| pseudouridylate synthase [Thalassiosira pseudonana CCMP1335] gi|220974376|gb|EED92705.1| pseudouridylate synthase [Thalassiosira pseudonana CCMP1335] Length = 469 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 78/267 (29%), Gaps = 75/267 (28%) Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D+G +A + +W + +AL+ L I + D+ F AR ++ Sbjct: 202 DTG-NANDNIQRKTYTDQW---KIRRALSTRLPPDIVIRSTWIWNGDEAFEARQRISCKT 257 Query: 112 YLYRI-----------------------ITRQAPLALEK----GRAWLIPKSLDCENMRI 144 Y+Y + I P L + W P LD + Sbjct: 258 YVYHLRFRSLTYCSPSTTNNDDTSQLHPICHAGPHLLRRISDQNNVWSSPWPLDPSLLPT 317 Query: 145 AAQHLVGRHDFTTF--------------RSIHCQASSPIRTIDHFDVNSFGNLIE----- 185 A Q VG HDF F R+ + S + F V+ + E Sbjct: 318 ACQLFVGVHDFGNFIHKDDRRGGSTRGKRNATDREKSHSIDLFQFTVDLQLDQYEDRSIP 377 Query: 186 ------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-----QAQDR------- 227 + A+ F +R+ VG + V G D+ L + R Sbjct: 378 PIYDAKFTLKAKGFHRQMVRNLVGFVVDVARGLRLLEDIPMLLTGNAGDEKTRIGDAISS 437 Query: 228 -------KECGPLAPPEGLYFDSVEYS 247 AP GL VEY Sbjct: 438 SIIDASLPSLVNAAPACGLCLAKVEYE 464 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 20 RQKNGS-SIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDLV 67 +Q ++Q +E A+ TG + V GAGRTD GVHA QV FD+ Sbjct: 103 KQNKAPITVQQQLETALHQWTGLSIATLRVRGAGRTDKGVHASGQVVGFDVP 154 Score = 36.0 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 13/18 (72%) Query: 4 YCMIIEYNGSGYFGWQRQ 21 + + IEYNG Y G+QRQ Sbjct: 17 FVLTIEYNGFAYAGFQRQ 34 >gi|326773999|ref|ZP_08233281.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] gi|326636138|gb|EGE37042.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] Length = 113 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Q Sbjct: 7 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALATVLREPVRLTVAGRTDAGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 VAH D+ P ++ + + ++ V Sbjct: 67 VAHLDV----SPEAWAALPGRSQRLPEAALLTRVAGV 99 >gi|308805336|ref|XP_003079980.1| Pseudouridylate synthase (ISS) [Ostreococcus tauri] gi|116058437|emb|CAL53626.1| Pseudouridylate synthase (ISS) [Ostreococcus tauri] Length = 409 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 90/295 (30%), Gaps = 57/295 (19%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS----------SIQGSIEKAIFLVTGEIVVVHGAGRTDS 53 + Y G + G+ + S+ S++ A+ +T + +GRTD Sbjct: 114 FAFRCAYRGVAFAGYAWNADVDGEKEWAFGEASVSASLQWALRDITDKGRPTPSSGRTDR 173 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKIS---DTISILNLSIVDKQFHARFSAIRR 110 GV A F V + L + + + V FHA FSA RR Sbjct: 174 GVSAGASCVSFWTRHPEVTSERIERLVNEESAPGKAGVLRVSEIREVPSSFHATFSAFRR 233 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV---GRHDFTTFRSIHCQASS 167 Y+Y + Q E+ LD M Q L G D F S Sbjct: 234 RYVYVLPKTQK-FGEERTPCAH----LDGATMNRILQPLAEVDGPIDMHAFARGTPPGRS 288 Query: 168 P----------------------------IRTIDHFDVN-------SFGNLIEIRVVARS 192 R+ D+ +++ I + A Sbjct: 289 SEVNFSVARAFDARLPRVALDDPDTHAGIRRSRRDVDITVSDSAAAEDLDVVVIELEADR 348 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDL-EKALQAQDRKECGPLAPPEGLYFDSVEY 246 FL R V + G +S D+ + +A+DR+ P AP GL Y Sbjct: 349 FLRKLARCLVATAAREAAGPPSSDDVLLRIARARDRRLAAPPAPALGLVLAGASY 403 >gi|255539108|ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis] gi|223551320|gb|EEF52806.1| pseudouridylate synthase, putative [Ricinus communis] Length = 584 Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 54 RKMAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDWARSARTD 113 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P L LN+ L I I V F+A+ RR Y Sbjct: 114 KGVSAVGQVISGRF--YVDPPGLVDRLNSIL--PSQIRIFGYKRVTASFNAKKFCDRRRY 169 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + + R Sbjct: 170 VYLIPVFALDPSSHRDR 186 Score = 72.2 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN-----SFGNLIEIRVVARSF 193 E ++ VG H+F F + S R I FD ++ V+ +SF Sbjct: 356 EKFNRILKYYVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGIEFVKCEVIGQSF 415 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + QIR +G + + + ALQ +D K P AP GLY D + Sbjct: 416 MLHQIRKMIGLAVAIMRNCAPESLISTALQ-KDVKINVPTAPEVGLYLDECFF 467 >gi|307107300|gb|EFN55543.1| hypothetical protein CHLNCDRAFT_133992 [Chlorella variabilis] Length = 593 Score = 93.0 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 10/122 (8%) Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNSFG-------NLIEI 186 ++LD M+ AA +G HDF F + Q ++ R + V L+++ Sbjct: 284 EALDVGRMQEAAAFFLGEHDFRNFCKVDVAQVTNFRRRVLDCRVEELPACAWGGRRLLQL 343 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSV 244 + +FL Q+R L +VG G+ + L Q RK LA E L S Sbjct: 344 HIRGTAFLWHQVRCMAAVLLMVGRGEEPPGIVATLLDPQQVPRKPQYTLASEEPLLLYSC 403 Query: 245 EY 246 Y Sbjct: 404 AY 405 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 21/142 (14%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFL-------VTGEIVVVHGAGRTD 52 RY + + Y G Y G+ RQ++ +I+G + A+ + + + GRTD Sbjct: 78 QRYVALELLYLGHAYGGFARQEHTEQTIEGHLFAALRTTRLVPAEASWQELRYSRGGRTD 137 Query: 53 SGVHALRQVAHFDL----------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 GV AL QV L V + LN L I +L + V F Sbjct: 138 KGVSALGQVVALLLRSAARTGEVQPEADVELDYPSLLNRVL--PQDIRVLGWADVPDDFS 195 Query: 103 ARFSAIRRSYLYRIITRQAPLA 124 ARFSA R Y Y I R Sbjct: 196 ARFSAQYREYKYLIAYRPPTPP 217 >gi|164661239|ref|XP_001731742.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966] gi|159105643|gb|EDP44528.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966] Length = 226 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 17/142 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTD 52 + + Y G+ Y G Q +I+G I +A V V + A RTD Sbjct: 77 RKVALFFGYCGTDYSGLQVNPGVKTIEGDIFEAFCRAGAVSKENAVNPNKVQLQRAARTD 136 Query: 53 SGVHALRQVAHFDL----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GVHA + L L +N+ L D I I + V F+AR S Sbjct: 137 RGVHAAGNLLTLKLILDPPNLPPNQTLTTYVNSLL--PDQIRIWGMRRVQSAFNARTSCD 194 Query: 109 RRSYLYRIITRQA--PLALEKG 128 R Y Y + T P A+E+ Sbjct: 195 SRLYEYLLPTYVFLPPKAMERN 216 >gi|302844654|ref|XP_002953867.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f. nagariensis] gi|300260975|gb|EFJ45191.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f. nagariensis] Length = 709 Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 68/213 (31%), Gaps = 49/213 (23%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV---------TGEIVVVHGA 48 M R + Y+G+GYFG QRQ + +++ +E+A+ V Sbjct: 1 MQRVAFVCGYDGAGYFGLQRQPDNTGRPTVEQELERALVAAGALQARHAGALHKVNWSRT 60 Query: 49 GRTDSGVHALRQVAHFDLVR-------------------------EWVPVILCKALNAYL 83 RTD GV A V D+ L +NA L Sbjct: 61 SRTDKGVSAAANVVSLDIPSGAAAAAAAANAAGGRGNSGGGGGGAAADLTPLVNLVNAAL 120 Query: 84 KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 + + + F AR +A R Y Y + +L L+ + + Sbjct: 121 --PSAVKVWTATRPGPNFEARRAAYGRRYEYLVPVWALDPSLT---------PLELKRLN 169 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPI-RTIDHF 175 + + VG H F F S + RTI Sbjct: 170 LILEVFVGSHCFHNFTSEPADDPRELRRTIHRA 202 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQDRKECGPLAPPEGLYF 241 + I V FL QIR VG V + AL A+ P APP GL Sbjct: 437 YVRIVFVGCGFLMHQIRRMVGLALAVARRTAPPDCMRTALDPARPFLITVPTAPPTGLIM 496 Query: 242 DS 243 D Sbjct: 497 DR 498 >gi|320033682|gb|EFW15629.1| tRNA pseudouridine synthase [Coccidioides posadasii str. Silveira] Length = 597 Score = 92.6 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 62/187 (33%), Gaps = 24/187 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + + RTD Sbjct: 114 RKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L L +N L S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKL--IIEDPDLVNKVNNIL--SPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I T P + + + AA+ D ++ + S + Sbjct: 230 EYLIPTHCFLPP--------HPSTFLAKKLLEAAEK---EGDIGDYKKRQEEVLSYWEDV 278 Query: 173 DHFDVNS 179 DH + Sbjct: 279 DHEYIRP 285 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 + +A+ I ++ +G +F + + +S R I F+++ Sbjct: 362 FKAKKAYRIH-PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPII 420 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V LV + + +K P AP Sbjct: 421 IDGTEWLSLKVHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQ--SYGPQKIPIPKAPGL 478 Query: 238 GLYFDS 243 GL + Sbjct: 479 GLLLER 484 >gi|303312455|ref|XP_003066239.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105901|gb|EER24094.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 597 Score = 92.6 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 62/187 (33%), Gaps = 24/187 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + + RTD Sbjct: 114 RKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L L +N L S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKL--IIEDPDLVNKVNNIL--SPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I T P + + + AA+ D ++ + S + Sbjct: 230 EYLIPTHCFLPP--------HPSTFLAKKLLEAAEK---EGDIGDYKKRQEEVLSYWEDV 278 Query: 173 DHFDVNS 179 DH + Sbjct: 279 DHEYIRP 285 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 + +A+ I ++ +G +F + + +S R I F+++ Sbjct: 362 FKAKKAYRIH-PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPII 420 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V LV + + +K P AP Sbjct: 421 IDGTEWLSLKVHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQ--SYGPQKIPIPKAPGL 478 Query: 238 GLYFDS 243 GL + Sbjct: 479 GLLLER 484 >gi|119192942|ref|XP_001247077.1| tRNA pseudouridine synthase 1, putative [Coccidioides immitis RS] Length = 597 Score = 92.6 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 62/187 (33%), Gaps = 24/187 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + + RTD Sbjct: 114 RKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L L +N L S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKL--IIEDPDLVNKVNNIL--SPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I T P + + + AA+ D ++ + S + Sbjct: 230 EYLIPTHCFLPP--------HPSTFLAKKLLEAAEK---EGDIGDYKKRQEEVLSYWEDV 278 Query: 173 DHFDVNS 179 DH + Sbjct: 279 DHEYIRP 285 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 + +A+ I ++ +G +F + + +S R I F+++ Sbjct: 362 FKAKKAYRIH-PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPII 420 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V LV + + +K P AP Sbjct: 421 IDGTEWLSLKVHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQ--SYGPQKIPIPKAPGL 478 Query: 238 GLYFDS 243 GL + Sbjct: 479 GLLLER 484 >gi|50287019|ref|XP_445939.1| hypothetical protein [Candida glabrata CBS 138] gi|74637780|sp|Q6FV05|PUS1_CANGA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49525245|emb|CAG58858.1| unnamed protein product [Candida glabrata] Length = 549 Score = 92.6 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTG---EIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 87 RKVAVMIGYCGTGYHGMQYNPPNPTIEAALFKAFVDAGAISKANSNDLKKNNFMRAARTD 146 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + + + +NA L + I I ++ V+K F R R Y Sbjct: 147 KGVHAGGNLISLKM--IIEDPEIMDKINANL--PEGIRIWDIERVNKAFDCRKMCSSRWY 202 Query: 113 LYRIIT 118 Y + T Sbjct: 203 EYLLPT 208 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN-------SFGNLIEIRVVA 190 R A +G H+F F + S IR + V+ + + I++ Sbjct: 306 LNKFRAAMNQYLGAHNFHNFTLGKEFKDPSAIRFMKEIKVSDPFVIGDAKAEWVSIKIHG 365 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +SF+ QIR + L+ + +A Q K P AP GL + Sbjct: 366 QSFMLHQIRKMISMATLIARCGTPVERISQAFGPQ--KINIPKAPALGLLLE 415 >gi|297850452|ref|XP_002893107.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338949|gb|EFH69366.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 571 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 13/123 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSG 54 ++ + G GY G Q+ +I+G +E+A+F + RTD G Sbjct: 60 VAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPEADRNKPRNYEWARSARTDKG 119 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV P + LN+ L D I + V F ++ RR Y+Y Sbjct: 120 VSAVGQVVSGRF--YVDPPGFVERLNSKL--PDQIRVFGYKRVAPSFSSKKLCDRRRYVY 175 Query: 115 RII 117 I Sbjct: 176 LIP 178 Score = 67.9 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 9/115 (7%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFDVNSF-----GNLIEIRVVAR 191 E + VG H+F F + +A+ P R I F+ N+ + I+ VV + Sbjct: 330 MERFNRILSYYVGSHNFHNF-TTRTKAADPAANRYILSFNANTVINLDGKDFIKCEVVGQ 388 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 SF+ QIR +G V + +E A + +D + P+AP GLY D + Sbjct: 389 SFMLHQIRKMIGLAVAVMRNYAPESLIETAFK-KDVRINVPMAPEVGLYLDECFF 442 >gi|168042339|ref|XP_001773646.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675034|gb|EDQ61534.1| predicted protein [Physcomitrella patens subsp. patens] Length = 445 Score = 92.2 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 63/196 (32%), Gaps = 43/196 (21%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + M + Y G+ Y G Q Q+ +I+ +E AIF G + + R Sbjct: 3 KVAMWLGYVGTRYKGLQIQRGPGSAQTIEEELELAIFKAGGMIESNFGNLSKISWTRSSR 62 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L V + A N +S I + ++ V + F AR Sbjct: 63 TDKGVHSLCTVISMKMEVPEAAWVNDMDGFALADNINFHLSPFIRVFGITPVTRSFRARH 122 Query: 106 SAIRRSYLYR-------IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 R+Y Y I P +E+ R G+H + + Sbjct: 123 DCCTRTYDYLLPAAILGIHPDTVPSQVEQR----------VTKFRSLLHLFEGKHAYHNY 172 Query: 159 RSIHCQASSPIRTIDH 174 IR + Sbjct: 173 ---------TIRRLYR 179 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 166 SSPIRTIDHFDV---NSFGN--LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 SS R + F+ +FG I I + SF+ QIR +G+ V G + Sbjct: 259 SSHFRKVISFNCGMPETFGEAQFIRISITGSSFMVHQIRKMIGTAIAVFHGLLPGDVIPI 318 Query: 221 ALQAQDRKECGPLAPPEGLYFD 242 +L R PLAPP+GL Sbjct: 319 SLARHSR-IVLPLAPPDGLILV 339 >gi|224085970|ref|XP_002307759.1| predicted protein [Populus trichocarpa] gi|222857208|gb|EEE94755.1| predicted protein [Populus trichocarpa] Length = 426 Score = 92.2 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 1 RKIAIFLTYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEHDRGIPKRYDWARSARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P L + L++ L S I I V F+A+ RR Y Sbjct: 61 KGVSAVGQVVSGRF--YIDPPGLVERLHSNL--SPQIRIFGYKRVTGSFNAKKFCDRRRY 116 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + R Sbjct: 117 VYLIPVFALNPCSHRDR 133 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN-----SFGNLIEIRVVARSF 193 E + +G H+F F + S R I FD ++ VV +SF Sbjct: 247 ERFNRILNYYLGSHNFHNFTTRTKAEDPSAQRYIISFDAKTTVAVEGIEFVKCEVVGQSF 306 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + QIR +G + + + ++ ALQ ++ P AP GLY D + Sbjct: 307 MLHQIRKMIGVAVAIMRNCASESLIQTALQ-KNVNINVPTAPEVGLYLDECFF 358 >gi|297842357|ref|XP_002889060.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297334901|gb|EFH65319.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 458 Score = 91.8 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTD 52 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 22 QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P LN+ L + I I V F ++ RR Y Sbjct: 82 KGVSAVGQVVSGRFNV--DPPGFVDRLNSNL--PNQIRIFGYKHVTPSFSSKKFCDRRRY 137 Query: 113 LYRIITRQAPLALEKGR 129 +Y + + R Sbjct: 138 VYLLPVFALDPISHRDR 154 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNS----FG-NLIEIRVVARSF 193 E VG ++F F + R I F N+ G + I+ V+ +SF Sbjct: 274 ERFNRILSCYVGSYNFHNFTTRTKADDPAANRQIISFTANTVINLDGIDFIKCEVLGKSF 333 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + QIR +G + + + ++ A ++D P+AP GLY D + Sbjct: 334 MLHQIRKMMGLAVAIMRNCASESLIQTAF-SKDVNITVPMAPEVGLYLDECFF 385 >gi|326478893|gb|EGE02903.1| tRNA pseudouridine synthase [Trichophyton equinum CBS 127.97] Length = 582 Score = 91.8 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 26/187 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A V + RTD Sbjct: 100 KVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTDK 159 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L I + + K F A R Y Sbjct: 160 GVHAAGNVVSLKL--IIEDPDIVQKINEKLN--PQIRVWGIIPATKGFSAYQFCDSRMYE 215 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTI 172 Y I + P + + M A+ +H D FR + S Sbjct: 216 YLIPSHCFLPP--------HPSTFLAQKMVEMAE----KHGDMEAFRERQAEVESYWEET 263 Query: 173 DHFDVNS 179 D + Sbjct: 264 DKKHIQP 270 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 14/128 (10%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 + + IP + A VG +F + + S R I F ++ Sbjct: 343 FKAKNEYRIPPER-LARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV 401 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAP 235 + ++V +SF+ QIR V + LV G D+++ ++ Q+ + P AP Sbjct: 402 INGTEWLSLKVHGQSFMMHQIRKMVAMVALLVRCG----ADIKRIEESYQNSRIPIPKAP 457 Query: 236 PEGLYFDS 243 GL + Sbjct: 458 GLGLLLER 465 >gi|326469581|gb|EGD93590.1| tRNA pseudouridine synthase [Trichophyton tonsurans CBS 112818] Length = 582 Score = 91.8 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 26/187 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A V + RTD Sbjct: 100 KVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTDK 159 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L I + + K F A R Y Sbjct: 160 GVHAAGNVVSLKL--IIEDPDIVQKINEKLN--PQIRVWGIIPATKGFSAYQFCDSRMYE 215 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTI 172 Y I + P + + M A+ +H D FR + S Sbjct: 216 YLIPSHCFLPP--------HPSTFLAQKMVEMAE----KHGDMEAFRERQAEVESYWEET 263 Query: 173 DHFDVNS 179 D + S Sbjct: 264 DKKHIQS 270 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 14/128 (10%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 + + IP + A VG +F + + S R I F ++ Sbjct: 343 FKAKNEYRIPPER-LARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV 401 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAP 235 + ++V +SF+ QIR V + LV G D+++ ++ Q+ + P AP Sbjct: 402 INGTEWLSLKVHGQSFMMHQIRKMVAMVALLVRCG----ADIKRIEESYQNSRIPIPKAP 457 Query: 236 PEGLYFDS 243 GL + Sbjct: 458 GLGLLLER 465 >gi|42572123|ref|NP_974152.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|332197678|gb|AEE35799.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 356 Score = 91.8 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTD 52 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 22 QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P+ LN+ L + I I V F ++ RR Y Sbjct: 82 KGVSAVGQVVSGRF--IVDPLGFVNRLNSNL--PNQIRIFGYKHVTPSFSSKKFCDRRRY 137 Query: 113 LYRIITRQAPLALEKGR 129 +Y + + R Sbjct: 138 VYLLPVFALDPISHRDR 154 Score = 42.5 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNS----FG-NLIEIRVVARSF 193 E VG ++F F + R I F N+ G + I+ V+ +SF Sbjct: 266 ERFSRILSCYVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSF 325 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + QIR +G + + + ++ A Sbjct: 326 MLHQIRKMMGLAVAIMRNCASESLIQSAF 354 >gi|18411027|ref|NP_565126.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|6573728|gb|AAF17648.1|AC009978_24 T23E18.5 [Arabidopsis thaliana] gi|21592498|gb|AAM64448.1| unknown [Arabidopsis thaliana] gi|21703099|gb|AAM74492.1| At1g76120/T23E18_5 [Arabidopsis thaliana] gi|23308411|gb|AAN18175.1| At1g76120/T23E18_5 [Arabidopsis thaliana] gi|332197677|gb|AEE35798.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 463 Score = 91.8 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTD 52 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 22 QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P+ LN+ L + I I V F ++ RR Y Sbjct: 82 KGVSAVGQVVSGRF--IVDPLGFVNRLNSNL--PNQIRIFGYKHVTPSFSSKKFCDRRRY 137 Query: 113 LYRIITRQAPLALEKGR 129 +Y + + R Sbjct: 138 VYLLPVFALDPISHRDR 154 Score = 59.8 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNS----FG-NLIEIRVVARSF 193 E VG ++F F + R I F N+ G + I+ V+ +SF Sbjct: 266 ERFSRILSCYVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSF 325 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + QIR +G + + + ++ A ++D P+AP GLY D + Sbjct: 326 MLHQIRKMMGLAVAIMRNCASESLIQSAF-SKDVNITVPMAPEVGLYLDECFF 377 >gi|299470490|emb|CBN78481.1| pseudouridylate synthase, putative [Ectocarpus siliculosus] Length = 743 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 35/189 (18%) Query: 2 IRYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVTG---------EIVVVHGA 48 + +++ Y G+ + GWQ+ Q N +++G +E A++ + Sbjct: 29 RKVAIVVGYVGTAFHGWQQSTDAQ-NVRTVEGELETALWKAGAIADSNYGDLNKIGWGRT 87 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQF 101 RTD GVHA + VA L+ LN L D I ++S V K F Sbjct: 88 SRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKL--PDDIRCFSVSKVPKSF 145 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 R R Y Y + L+P R + VG H F + S Sbjct: 146 RGREECTLREYTYYLPRE------------LLPDDEALGKFRELLKLFVGTHSFHNYAST 193 Query: 162 HCQASSPIR 170 + +R Sbjct: 194 KGRQLKEVR 202 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + ++F++ QIR +G G S +E AL+ K PLAP EGL Sbjct: 448 DEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLWSGFVEAALKTP-YKLRVPLAPAEGLV 506 Query: 241 FD 242 + Sbjct: 507 LE 508 >gi|327303396|ref|XP_003236390.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] gi|326461732|gb|EGD87185.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] Length = 580 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 26/187 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A V + RTD Sbjct: 100 KVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTDK 159 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L S I + + K F A R Y Sbjct: 160 GVHAAGNVVSLKL--IIEDPDIVQKINEKL--SPQIRVWGIIPATKGFSAYQFCDSRMYE 215 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTI 172 Y I + P + + M A+ +H D F+ + S Sbjct: 216 YLIPSHCFLPP--------HPSTFLAQKMDEMAE----KHGDMEAFKERQAEVESYWEET 263 Query: 173 DHFDVNS 179 D + Sbjct: 264 DKKHIQP 270 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 14/128 (10%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 + + IP + A VG +F + + S R I F ++ Sbjct: 341 FKAKNEYRIPPER-LARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV 399 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAP 235 + ++V +SF+ QIR V + LV G D+++ ++ Q+ + P AP Sbjct: 400 INGTEWLSLKVHGQSFMMHQIRKMVAMVALLVRCG----ADIKRIEESYQNSRIPIPKAP 455 Query: 236 PEGLYFDS 243 GL + Sbjct: 456 GLGLLLER 463 >gi|300706061|ref|XP_002995341.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01] gi|239604377|gb|EEQ81670.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01] Length = 344 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 89/265 (33%), Gaps = 48/265 (18%) Query: 2 IRYC--MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGR 50 ++ I Y G+GY G Q + ++I+ +I + +F + + + R Sbjct: 1 MKIKAGFCIGYIGTGYSGLQLNGDYNTIEKAISECLFSCSAISSQNAKDPSKIHLKSSSR 60 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA + + + V K L L + I + + + K F I R Sbjct: 61 TDKGVHAAFNLISCKIECQITDVFFQK-LKECLFSKN-IYLYKILRLTKSFIPTNLTISR 118 Query: 111 SYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRI------------------------- 144 +Y Y + T A + LI K L+ + M Sbjct: 119 TYEYILPTYFLAKSNFSAECSDLIAKDLNRDKMTKREYNEKDIEQIFGYLADKDDIKYFC 178 Query: 145 -AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHTQI 198 +G +F F ++ R I + + V I+I + +SFL QI Sbjct: 179 DIFTKFLGTKNFHNFTTL-SNHKGKQRYIKNIEFSNAYVIDDIEYIKITIEGQSFLLHQI 237 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQ 223 R + L+ K + + Sbjct: 238 RKMIYFSVLLCRYKR--NEFSTIFE 260 >gi|170291222|ref|YP_001738038.1| tRNA pseudouridine synthase [Candidatus Korarchaeum cryptofilum OPF8] gi|170175302|gb|ACB08355.1| tRNA pseudouridine synthase [Candidatus Korarchaeum cryptofilum OPF8] Length = 232 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 79/240 (32%), Gaps = 64/240 (26%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y G Y G Q + ++ ++ +A+ G + RTD GV AL +A Sbjct: 8 LRIAYLGWNYHGVVEQPSLPTVGSALREAMES-QGIRAKLRFTSRTDRGVSALDNIAF-- 64 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSI--VDKQFHARFSAIRRSYLYRIITRQAPL 123 P LN+ L I++ ++ + K R+Y Y I Sbjct: 65 ---YRGPAPNVSLLNSEL--PKDIAVWAIATGGIPK-------PKARAYCYAI------- 105 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + ++LD AQ +G + I+ DV S N Sbjct: 106 PFRLSETECVRRALD-----ELAQAGLG------------------KNIERIDVKSGENF 142 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + +SF +IR VG + G+ LAPPEGL Sbjct: 143 TYIEIYGKSFKKNEIRRIVGRALELHLGR-----------------SIGLAPPEGLVLTE 185 >gi|156095520|ref|XP_001613795.1| tRNA pseudouridine synthase [Plasmodium vivax SaI-1] gi|148802669|gb|EDL44068.1| tRNA pseudouridine synthase, putative [Plasmodium vivax] Length = 545 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTIDHFDVNS-FGNLIEIRVV 189 D E ++ + +GRH F FR + +P I +++ N+ + + Sbjct: 414 PCDVEKIKECCKLFLGRHSFELFRGTLKGTEKQKQVNPFCNISFLELHQLRSNIYQFVIQ 473 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL+ IR VG+L VG G + D+ AL + AP +GL + + Sbjct: 474 GDRFLYHMIRIIVGTLVQVGVGLLSYEDVRDALHFSKPLKVKLCAPAQGLCLTKILFP 531 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 63/195 (32%), Gaps = 51/195 (26%) Query: 2 IRYCMIIEYNGSGYFGWQ----------------------RQKNGS----SIQGSIEKAI 35 +I++Y+G+ Y GW ++ G S+Q I + Sbjct: 108 TNLLLIVDYDGTNYSGWTGVENCSDIYLSATRNYKRAATEKKPKGESKCDSVQNVILNCL 167 Query: 36 FLVTG----------------EIVVVHGAGRTDSGVHALRQVAHFDLVREWVP-----VI 74 + G + G RTD GVHA V + P Sbjct: 168 LKIHGYADQWDKHANDVKSNLKAFEFIGVSRTDKGVHAKEYVCQYVSYERPPPCEGNLQK 227 Query: 75 LCKALNAYLKISDTISILNLSIVD-KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 + ALN L I IL + F+ RF+ + Y Y TR LE+ AW + Sbjct: 228 VKMALNGLLNR--DIRILGVLNAPSHDFNVRFNNWGKIYTYNFDTRIPSQPLERNYAWQL 285 Query: 134 PKSLDCE-NMRIAAQ 147 +R +A+ Sbjct: 286 YDDPRFAFLLRESAK 300 >gi|218135247|ref|ZP_03464051.1| hypothetical protein BACPEC_03152 [Bacteroides pectinophilus ATCC 43243] gi|217990632|gb|EEC56643.1| hypothetical protein BACPEC_03152 [Bacteroides pectinophilus ATCC 43243] Length = 83 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + FD++ G I IRV FL+ +R G+L G + T +++AL +R+ GP Sbjct: 6 EKFDLDR-GREIVIRVSGNGFLYNMVRIIAGTLIDAGCKRRTPLSVKEALDGCNRELAGP 64 Query: 233 LAPPEGLYFDSVE 245 APP+GL ++ Sbjct: 65 TAPPQGLTLIEIK 77 >gi|298229126|ref|ZP_06962807.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19F] Length = 57 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVH 56 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVH Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVH 57 >gi|302656568|ref|XP_003020036.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517] gi|291183816|gb|EFE39412.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517] Length = 570 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 26/187 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A V + RTD Sbjct: 100 KVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTDK 159 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L I + + K F A R Y Sbjct: 160 GVHAAGNVVSLKL--IIEDPDIVQKINEKLN--PQIRVWGIIPATKGFSAYQFCDSRMYE 215 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTI 172 Y I + P + + M A+ +H D F+ + S Sbjct: 216 YLIPSHCFLPP--------HPSTFLAQKMVEMAE----KHGDMEAFKERQAEVESYWEET 263 Query: 173 DHFDVNS 179 D + Sbjct: 264 DKKHIQP 270 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 13/114 (11%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVAR 191 + A VG +F + + S R I F ++ + ++V + Sbjct: 354 LARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVVINGTEWLSLKVHGQ 413 Query: 192 SFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAPPEGLYFDS 243 SF+ QIR V + LV G D+++ ++ Q+ + P AP GL + Sbjct: 414 SFMMHQIRKMVAMVALLVRCG----ADIKRIEESYQNSRIPIPKAPGLGLLLER 463 >gi|302509324|ref|XP_003016622.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371] gi|291180192|gb|EFE35977.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371] Length = 573 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 26/187 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A V + RTD Sbjct: 100 KVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTDK 159 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L I + + K F A R Y Sbjct: 160 GVHAAGNVVSLKL--IIEDPDIVQKINEKLN--PQIRVWGIIPATKGFSAYQFCDSRMYE 215 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTI 172 Y I + P + + M A+ +H D F+ + S Sbjct: 216 YLIPSHCFLPP--------HPSTFLAQKMVEMAE----KHGDMEAFKERQAEVESYWEET 263 Query: 173 DHFDVNS 179 D + Sbjct: 264 DKKHIQP 270 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 14/128 (10%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 + + IP + A VG +F + + S R I F ++ Sbjct: 344 FKAKNEYRIPPER-LARINAALALYVGTKNFHNYTIQKTFRDPSARRLIKSFKISRDPVV 402 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAP 235 + ++V +SF+ QIR V + LV G D+++ ++ Q+ + P AP Sbjct: 403 INGTEWLSLKVHGQSFMMHQIRKMVAMVALLVRCG----ADIKRIEESYQNSRIPIPKAP 458 Query: 236 PEGLYFDS 243 GL + Sbjct: 459 GLGLLLER 466 >gi|326527051|dbj|BAK04467.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 572 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + +I+ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 48 RKVAIILAYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRAAPARYEWARAARTD 107 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P LNA L I V F A+ RR Y Sbjct: 108 KGVSAAAQVVSGRF--YVDPPGFIDRLNAKLA--PQIRAFGYVRVTNSFSAKKFCDRRRY 163 Query: 113 LYRII 117 +Y + Sbjct: 164 VYLLP 168 Score = 61.8 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 7/110 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 E +H VG +F F + + R I F NS + + VV +SF Sbjct: 370 EKFNRILKHYVGTRNFHNFTTRTKAEDPAAKRYIISFTANSVVSLDGIDFVRCEVVGQSF 429 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + QIR VG V + +D + P AP GL+ D Sbjct: 430 MLHQIRKMVGLAVAVMRNC-APESIYDVAFRKDIRLNVPTAPEVGLHLDE 478 >gi|302308519|ref|NP_985445.2| AFL105Cp [Ashbya gossypii ATCC 10895] gi|299790670|gb|AAS53269.2| AFL105Cp [Ashbya gossypii ATCC 10895] Length = 528 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + +++ Y G+GY G Q +I+ + +A + A RTD Sbjct: 67 RKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRAARTD 126 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +N +L I + +S V+K F R R Y Sbjct: 127 KGVHAGGNVISLKL--IIEDPAIKDKINEHL--PPGIRVWGISRVNKAFDCRKLCGSRWY 182 Query: 113 LYRIIT 118 Y + T Sbjct: 183 EYLLPT 188 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 11/129 (8%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG---- 181 R++ + + R A + +G H+F + + S +R + V+ Sbjct: 275 HRRSYRVSSA-KLARFREAMKQYLGPHNFHNYTLGKDFKDPSTVRFMKDITVSDPFVIGE 333 Query: 182 ---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I++ +SF+ QIR + LV + + + +K P AP G Sbjct: 334 MKTEWVSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQ--SYGPQKINIPKAPALG 391 Query: 239 LYFDSVEYS 247 L +S Y Sbjct: 392 LLLESPVYE 400 >gi|74693104|sp|Q755C8|PUS1_ASHGO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 Length = 528 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + +++ Y G+GY G Q +I+ + +A + A RTD Sbjct: 67 RKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRAARTD 126 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +N +L I + +S V+K F R R Y Sbjct: 127 KGVHAGGNVISLKL--IIEDPAIKDKINEHL--PPGIRVWGISRVNKAFDCRKLCGSRWY 182 Query: 113 LYRIIT 118 Y + T Sbjct: 183 EYLLPT 188 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 11/129 (8%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG---- 181 R++ + + R A + +G H+F + + S +R + V+ Sbjct: 275 HRRSYRVSSA-KLARFREAMKQYLGPHNFHNYTLGKDFKDPSTVRFMKDITVSRPFVIGE 333 Query: 182 ---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I++ +SF+ QIR + LV + + + +K P AP G Sbjct: 334 MKTEWVSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQ--SYGPQKINIPKAPALG 391 Query: 239 LYFDSVEYS 247 L +S Y Sbjct: 392 LLLESPVYE 400 >gi|218191324|gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indica Group] Length = 581 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 49 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTD 108 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P + LNA L I V F+A+ RR Y Sbjct: 109 KGVSAAAQVVSGRF--YVDPPVFTDRLNAQLA--PQIRAFGYVRVTNSFNAKKFCDRRRY 164 Query: 113 LYRII 117 +Y + Sbjct: 165 VYLLP 169 Score = 68.3 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 7/110 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 E + VG H+F F + + R I F + + I VV +SF Sbjct: 379 ERFNRILKKYVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFIRCEVVGQSF 438 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + QIR +G V + +D P AP GLY D Sbjct: 439 MLHQIRKMIGLAVAVMRNC-APESIYDVAFRKDVNLNVPTAPEVGLYLDE 487 >gi|115447813|ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group] gi|50251324|dbj|BAD28300.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group] gi|50252138|dbj|BAD28134.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group] gi|113537217|dbj|BAF09600.1| Os02g0668400 [Oryza sativa Japonica Group] Length = 581 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 49 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTD 108 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P + LNA L I V F+A+ RR Y Sbjct: 109 KGVSAAAQVVSGRF--YVDPPVFTDRLNAQLA--PQIRAFGYVRVTNSFNAKKFCDRRRY 164 Query: 113 LYRII 117 +Y + Sbjct: 165 VYLLP 169 Score = 68.3 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 7/110 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 E + VG H+F F + + R I F + + I VV +SF Sbjct: 379 ERFNRILKKYVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFIRCEVVGQSF 438 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + QIR +G V + +D P AP GLY D Sbjct: 439 MLHQIRKMIGLAVAVMRNC-APESIYDVAFRKDVNLNVPTAPEVGLYLDE 487 >gi|315050550|ref|XP_003174649.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893] gi|311339964|gb|EFQ99166.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893] Length = 582 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 26/187 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A V + RTD Sbjct: 101 KVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTDK 160 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L I + + K F A R Y Sbjct: 161 GVHAAGNVVSLKL--IIEDPDVVQKINEKLN--PQIRVWGIIPATKGFSAYQFCDSRMYE 216 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTI 172 Y I + P + + M A+ +H D F+ + S Sbjct: 217 YLIPSHCFLPP--------HPSTFLAQKMVEMAE----KHGDMEAFKERQAEVESYWEET 264 Query: 173 DHFDVNS 179 D + Sbjct: 265 DKKHIQP 271 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 14/128 (10%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 E + IP + A VG +F + + +S R I F ++ Sbjct: 343 FEAKNEYRIPPER-LARINAALALYVGTKNFHNYTIQKTFRDASARRLIKSFKISRDPVV 401 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAP 235 + ++V +SF+ QIR V + LV G D+ + ++ Q+ + P AP Sbjct: 402 INGTEWLSLKVHGQSFMMHQIRKMVAMVALLVRCG----ADINRINESYQNSRIPIPKAP 457 Query: 236 PEGLYFDS 243 GL + Sbjct: 458 GLGLLLER 465 >gi|320583409|gb|EFW97622.1| tRNA pseudouridine synthase [Pichia angusta DL-1] Length = 491 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 13/131 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 + + Y G+GY G Q +I+G + A + A RTD Sbjct: 80 KVACYLSYCGTGYHGMQMNPPAKTIEGDLFDAFVKAGAISKNNSNDLKKSSFMRAARTDK 139 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L L + +N+YL D I V+K F R R Y Sbjct: 140 GVHAAGNVISLKL--IIEDPDLVEKINSYL--PDQIRFWGYERVNKSFDCRKVCSSRIYE 195 Query: 114 YRIITRQAPLA 124 Y + T Sbjct: 196 YLMPTYSFLPP 206 Score = 63.3 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 8/115 (6%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS-----FGNLIEIRVVARS 192 +R A + +G H+F F + + S IR + + V+ + I++ +S Sbjct: 296 LNLLRDALKIYLGPHNFHNFTNGKDYKDPSAIRFMKNITVSDPIVVNDQEWVSIKIHGQS 355 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR + LV +E+A + P AP GL + Y Sbjct: 356 FMLHQIRKMIAMATLVVRTGCPLARIEEAFGPEKVN--IPKAPALGLLLEQPVYE 408 >gi|146412075|ref|XP_001482009.1| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC 6260] Length = 477 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRT 51 + +I Y G+GY G Q Q + +I+G + A + A RT Sbjct: 30 KVACMIGYCGTGYNGMQIQNNPDVKTIEGDLFDAFVKAGAISPENADDLKKNAFMRAART 89 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHA V L + + +N++L D I + + +K F R R Sbjct: 90 DKGVHAAGNVISCKL--IIEDQDILQRINSHL--PDQIRVWGIERTNKSFDCRKMCSSRV 145 Query: 112 YLYRIIT 118 Y Y + T Sbjct: 146 YEYLLPT 152 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 8/115 (6%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVN-----SFGNLIEIRVVARS 192 R A + G H+F F + +S R + V+ + I++ +S Sbjct: 262 LNLFREAMKLYEGSHNFHNFTIGKPFKDASSRRYMKETTVSNPFIIEGTEWVSIKIHGQS 321 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR + LV T ++ K P AP GL ++ Y Sbjct: 322 FMLHQIRKMIAMAVLVVRTGCPITRIKDCF--GPTKINIPKAPALGLLLENPVYE 374 >gi|190349084|gb|EDK41674.2| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC 6260] Length = 477 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRT 51 + +I Y G+GY G Q Q + +I+G + A + A RT Sbjct: 30 KVACMIGYCGTGYNGMQIQNNPDVKTIEGDLFDAFVKAGAISPENADDLKKNAFMRAART 89 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHA V L + + +N++L D I + + +K F R R Sbjct: 90 DKGVHAAGNVISCKL--IIEDQDILQRINSHL--PDQIRVWGIERTNKSFDCRKMCSSRV 145 Query: 112 YLYRIIT 118 Y Y + T Sbjct: 146 YEYLLPT 152 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 8/115 (6%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVN-----SFGNLIEIRVVARS 192 R A + G H+F F + +S R + V+ + I++ +S Sbjct: 262 LNLFREAMKLYEGSHNFHNFTIGKPFKDASSRRYMKETTVSNPFIIEGTEWVSIKIHGQS 321 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR + LV T ++ K P AP GL ++ Y Sbjct: 322 FMLHQIRKMIAMAVLVVRTGCPITRIKDCF--GPTKINIPKAPALGLLLENPVYE 374 >gi|169619633|ref|XP_001803229.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15] gi|111058695|gb|EAT79815.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15] Length = 621 Score = 89.5 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 24/177 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI + + RTD Sbjct: 105 RKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFTAFVAAGAISKANADDPKKSSLVRCARTD 164 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +N++L S+ I + + F + R Y Sbjct: 165 KGVHAAGNVISLKL--IIEEEDIVEKINSHL--SEQIRVWGIQRTTGSFSCYQACDSRWY 220 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y I T + + K L+ + D +R+ + ++ Sbjct: 221 EYLIPTHAFLPPHP---SSFLGKKLEEYAEKEG--------DMDAYRARQAEVANFW 266 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Query: 140 ENMRIAAQHLVGR---HDFTTFRSIHCQASSPIRTIDHFDVNSFG------NLIEIRVVA 190 ++ A + +G H++T + S R I F V + ++V Sbjct: 410 ARVQAALNNYLGTRKYHNYTVQKKFSD--KSAQRYIKSFKVAPKPIIINDTEWLSLKVHG 467 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +SF+ QIR VG + L + ++ + P AP GL + Sbjct: 468 QSFMMHQIRKMVGMVALTVRCGSNPDIMIESF--GNTIVRIPKAPGLGLLLER 518 >gi|224061937|ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|222842399|gb|EEE79946.1| predicted protein [Populus trichocarpa] Length = 429 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 17 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYDWARSARTD 76 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P L + L++ L S I V F+A+ RR Y Sbjct: 77 KGVSAVGQVVSGRF--YIDPPGLVERLHSNL--SPQFRIFGYKRVTGSFNAKKFCDRRRY 132 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + R Sbjct: 133 VYLIPVFALDPCSHRDR 149 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFD----VNSFG-NLIEIRVVARSF 193 E + VG H+F F + S R I F+ VN G ++ VV +SF Sbjct: 241 ERFNRILGYYVGSHNFHNFTTRTKAEDPSARRYIVSFEAKTTVNVEGIEFVKCEVVGQSF 300 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + QIR +G + + ++ ALQ +D P AP GLY D + Sbjct: 301 MLHQIRKMIGVAVAIMRNCAPESLIQTALQ-KDVNINVPTAPEVGLYLDECFF 352 >gi|269866402|ref|XP_002652261.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220062857|gb|EED41795.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 268 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 58/204 (28%), Gaps = 61/204 (29%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 + + I Y+G Y G Q+ NG SI +E A+ + E + GRTD GV A Sbjct: 58 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALKSTDLYIESNDIVFCGRTDRGVSAAN 117 Query: 60 QVAHFDL-------------------------------------------VREWVPVILC 76 + + +++ L Sbjct: 118 MIISLKIKSILETYSANPNYHRHIETETYDTYQFNKKEYKRYLLNNSDFEIKKHDAKELP 177 Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 L + I + + V F AR + +R Y Y P L Sbjct: 178 YDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTC---PPQLLPKY------- 227 Query: 137 LDCENMRIAAQHLVGRHDFTTFRS 160 + A + + DF F + Sbjct: 228 ------QEAGRIIYKTEDFYNFCT 245 >gi|255719542|ref|XP_002556051.1| KLTH0H03894p [Lachancea thermotolerans] gi|238942017|emb|CAR30189.1| KLTH0H03894p [Lachancea thermotolerans] Length = 546 Score = 89.5 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + ++I Y G+GY G Q +I+ + + AI + + A RTD Sbjct: 75 RKVAVMIGYCGTGYHGMQYNPPTPTIEAELFRAFVEAGAISQANSKDLKKSGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +N+ L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNVVSLKL--IIEDPDIIAKINSKL--PEGIRVWDIERVNKAFDCRKLCGSRWY 190 Query: 113 LYRIIT 118 Y + T Sbjct: 191 EYLLPT 196 Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (8%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDV-------N 178 RA+ I +S E R A + +G H+F F + S IR + V Sbjct: 283 HRRAYRISESR-LEAFRAAMKQYLGPHNFFNFTLGKEFKDPSAIRFMKEIKVSDPFVIGE 341 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I++ +SF+ QIR + LV + A + Q K P AP G Sbjct: 342 RNTEWVSIKIHGQSFMLHQIRKMISMATLVTRCSCPVDRITDAYKPQ--KINIPKAPALG 399 Query: 239 LYFDSVEYS 247 L + Y Sbjct: 400 LLLECPVYE 408 >gi|296812761|ref|XP_002846718.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480] gi|238841974|gb|EEQ31636.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480] Length = 576 Score = 88.7 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 26/187 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A + + RTD Sbjct: 100 KVIVMLGYSGTGYHGMQLCATEKTIEGDLFAAFVAANAISKANAMDPKKSSFVRCARTDK 159 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L I + + K F A R Y Sbjct: 160 GVHAAGNVVSLKL--IIEDPDIVQKINEKLN--PQIRVWGIIPATKGFSAYQFCDSRMYE 215 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTI 172 Y I + P + + M A+ +H D F+ + + Sbjct: 216 YLIPSHCFLPP--------HPSTFLAQKMVEMAE----KHGDMEAFKQRQAEVETYWEET 263 Query: 173 DHFDVNS 179 D + Sbjct: 264 DKKHIQP 270 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 15/138 (10%) Query: 116 IITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTID 173 I ++ LA + + IP + A VG +F + + S R I Sbjct: 337 IAIKEIRLAYFKAKNEYRIPPER-LARINEALSLYVGTRNFHNYTIQKTFRDPSAKRLIK 395 Query: 174 HFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQAQD 226 F ++ + ++V +SF+ QIR V + LV G D+ + ++ Sbjct: 396 SFKISRDPVVINGTEWLSLKVHGQSFMMHQIRKMVAMVALLVRCG----ADIHRIEESYQ 451 Query: 227 RKECG-PLAPPEGLYFDS 243 R P AP GL + Sbjct: 452 RPRIPIPKAPGLGLLLER 469 >gi|224035593|gb|ACN36872.1| unknown [Zea mays] Length = 199 Score = 88.7 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 9/115 (7%) Query: 142 MRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS------FGNLIEIRVVARSFL 194 M+ AA +G HDF F + S+ R I F +++ L + + +FL Sbjct: 1 MQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFL 60 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEYS 247 Q+R V L L+G G + + ++ L RK +AP L S + Sbjct: 61 WHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFD 115 >gi|312217345|emb|CBX97293.1| similar to tRNA pseudouridine synthase [Leptosphaeria maculans] Length = 615 Score = 88.3 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 24/197 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI + + RTD Sbjct: 108 RKVAVMIGYSGTGYKGMQIDYKQKTIEGDLFNAFVAAGAISKANATDHKKSSLVRCARTD 167 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +N L SD I + + F + R Y Sbjct: 168 KGVHAAGNVVSLKL--IIEDEDIVQKINDNL--SDQIRVWGIQRTVGSFSCYQACDSRWY 223 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I T P S + + A+ +D +RS + ++ + Sbjct: 224 EYLIPTHSFLPP--------HPSSFLGKKLEEYAEK---ENDLEGYRSRQAEVANFWSEV 272 Query: 173 DHFDVNSFGNLIEIRVV 189 + + + ++ + Sbjct: 273 EEKHIKPIRDSLDDSIR 289 Score = 51.8 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 9/115 (7%) Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRV 188 + E ++ A + +G H + + S R I F V + ++V Sbjct: 398 PIRQERVQAALNNYLGTHKYHNYTVQKKFSDKSAQRYIKSFKVAPKPIIINDTEWLSLKV 457 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +SF+ QIR VG L ++++ + P AP GL + Sbjct: 458 HGQSFMMHQIRKMVGMAALSVRCGTDPKIIQESF--GNTVVRIPKAPGLGLLLER 510 >gi|289613362|emb|CBI59671.1| unnamed protein product [Sordaria macrospora] Length = 634 Score = 88.3 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + A + + RTD Sbjct: 126 RKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRCARTD 185 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +N++L D I + + V F + R Y Sbjct: 186 KGVHAAANVLSLKL--IVEDEDIVEKINSHL--PDQIKVWGIQRVTNGFSCYQACDSRWY 241 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDC--ENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y L A L P+ + + AA+ G +D + + Sbjct: 242 EY----------LMPSYALLPPQPQSFLGKKIIDAAKE-KGTYD--EYVDRLDDVKNFWE 288 Query: 171 TIDHFDVNSFGNLIEIRVVA 190 ++ D+ ++ + A Sbjct: 289 EVEKNDIQPILEKMDPEIRA 308 Score = 66.0 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 9/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFG------NLIEIRVVAR 191 E ++ A +G H+F + + S R I F VN + ++V + Sbjct: 417 LEKLQEALNQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWLSLKVHGQ 476 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR V L+ + + + R+ P AP GL + Sbjct: 477 SFMMHQIRKMVAMAVLIVRCGAPMSLINE--SYGPRRISIPKAPGLGLMLER 526 >gi|85091723|ref|XP_959041.1| hypothetical protein NCU07528 [Neurospora crassa OR74A] gi|28920438|gb|EAA29805.1| hypothetical protein NCU07528 [Neurospora crassa OR74A] Length = 625 Score = 88.3 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + A + + RTD Sbjct: 121 RKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +N++L D I + + V F + R Y Sbjct: 181 KGVHAAANVLSLKL--IVEDEDIVDKINSHL--PDQIKVWGIQRVTNGFSCYQACDSRWY 236 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDC--ENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y L A L P+ + + AA+ G +D +R + Sbjct: 237 EY----------LMPSYALLPPQPQSFLGKKIIDAAKE-KGTYDEYMYRL--DDVKNFWE 283 Query: 171 TIDHFDVNSFGNLIEIRVVA 190 ++ D+ ++ + A Sbjct: 284 EVEKNDIQPILEKMDPEIRA 303 Score = 66.4 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 19/157 (12%) Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 + V+++F A+R + ++ + R E ++ A +G H Sbjct: 373 AAKVEREFTPVELAVREVKAAYVAAKR------RYRVTAPR----LEKLQEALNQYLGTH 422 Query: 154 DFTTFRSIHCQA-SSPIRTIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLK 206 +F + + S R I F VN + ++V +SF+ QIR V Sbjct: 423 NFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWLSLKVHGQSFMMHQIRKMVAMAV 482 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 L+ + + + R+ P AP GL + Sbjct: 483 LIVRCGAPMSLVNE--SYGPRRISIPKAPGLGLMLER 517 >gi|159120024|ref|XP_001710229.1| Pseudouridylate synthase 1 [Giardia lamblia ATCC 50803] gi|157438347|gb|EDO82555.1| Pseudouridylate synthase 1 [Giardia lamblia ATCC 50803] Length = 467 Score = 88.3 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 78/224 (34%), Gaps = 37/224 (16%) Query: 4 YCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIF---LVTGEIVVVHG---AGRT 51 + + Y G+ Y G Q Q + +++G I AI ++ G + G RT Sbjct: 41 IAVALGYVGTRYSGSQWQAPSATHPDIRTVEGEIYAAIEAAGILYGRDIKSIGWTRCSRT 100 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D V A V F L +AL +L ISI V +F A+ + R+ Sbjct: 101 DRSVSAAMAVFSFFGPGHLD---LVQALQPHL--PKDISIFGTVRVPPKFSAKMACTSRT 155 Query: 112 YLYRI--------ITRQAPLALEKGRAWLIPKSLD-------CENMRIAAQHLVG--RHD 154 Y Y + +A + +A+ LD E +R A L RHD Sbjct: 156 YEYMMPLVFLLPSSQEEASEPCQDVQAFFSY--LDSPYSAESTETVREACSRLYTAQRHD 213 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 F + + IRT + + + + FL + Sbjct: 214 ILDFLRLDDELQ-KIRTQVRIRASHDSPAVIFDTMLQPFLQQLV 256 >gi|213401667|ref|XP_002171606.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] gi|211999653|gb|EEB05313.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] Length = 453 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSI---EKAIFLVTGEI---VVVHGAGRTDSGV 55 +R +++ Y+G+ Y G Q ++I+ + +A+ L+ + + A RTD GV Sbjct: 41 VRIAVLLGYSGTKYHGIQLNNPHATIERVVLDVFQALGLIRDTDADHISLSRAARTDKGV 100 Query: 56 HALRQVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 HAL V F + + L LN L + I + ++ V F+ R R Y Y Sbjct: 101 HALGNVVSFLVSNFTFTGKELATRLNEKL--PEDIRVWDVLKVPMSFNPRLCCDSRLYEY 158 Query: 115 RIITRQAPLA 124 + + Sbjct: 159 YLPSFALIPP 168 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 143 RIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFD-----VNSFGNLIEIRVVARSFLHT 196 + A + +G H+F F + + S R I V + + + +SF+ Sbjct: 278 QKACEEYIGNHNFHNFTVNQDAASRSSWRYIHSIQLGKPFVYKEWEWVPVFLHGQSFMLH 337 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKAL 222 QIR + +V + + KA Sbjct: 338 QIRKMLAHAIMVVRTAAPISCVTKAF 363 >gi|226506356|ref|NP_001150144.1| LOC100283773 [Zea mays] gi|195637102|gb|ACG38019.1| tRNA pseudouridine synthase family protein [Zea mays] Length = 561 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 52 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTD 111 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P LNA L I V F+A+ RR Y Sbjct: 112 KGVSAAAQVVSGRF--YVDPPGFIDRLNAQLA--PQIRAYGYVRVTNSFNAKKFCDRRRY 167 Query: 113 LYRII 117 LY + Sbjct: 168 LYLLP 172 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 E ++ +G H+F F + + R I F + + + VV +SF Sbjct: 346 ERFNRILKYYIGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSF 405 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + QIR +G V + +D P AP GLY D Sbjct: 406 MLHQIRKMIGLAVAVIRNC-APESIYDVAFRKDVNLNVPTAPEVGLYLDE 454 >gi|223948195|gb|ACN28181.1| unknown [Zea mays] Length = 562 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 52 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTD 111 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P LNA L I V F+A+ RR Y Sbjct: 112 KGVSAAAQVVSGRF--YVDPPGFIDRLNAQLA--PQIRAYGYVRVTNSFNAKKFCDRRRY 167 Query: 113 LYRII 117 LY + Sbjct: 168 LYLLP 172 Score = 67.9 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 E ++ +G H+F F + + R I F + + + VV +SF Sbjct: 347 ERFNRILKYYIGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVSLDGIDFVRCEVVGQSF 406 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + QIR +G V + +D P AP GLY D Sbjct: 407 MLHQIRKMIGLAVAVMRNC-APESIYDVAFRKDVNLNVPTAPEVGLYLDE 455 >gi|213401227|ref|XP_002171386.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] gi|211999433|gb|EEB05093.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] Length = 503 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 13/132 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++ Y G+GY G Q +I+G + +A V + V + A RTD Sbjct: 44 RKVACLVGYCGTGYHGMQLNPPNKTIEGDLFEAFVKVGAVSSYNADDPKKVALARAARTD 103 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L L + +N L TI + ++ F+ R R Y Sbjct: 104 KGVHAAGNVITLKL--ILEDENLIQKVNEVL--PPTIRVWDVIRTINSFNPRTYCESRIY 159 Query: 113 LYRIITRQAPLA 124 Y + + Sbjct: 160 EYLLPSYAFAPP 171 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 8/106 (7%) Query: 143 RIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVN-----SFGNLIEIRVVARSFLHT 196 R A + G H+F F S R I F V+ + ++V +SF+ Sbjct: 288 REAFKRFEGVHNFHNFTVGQSFHDRSSNRVIKSFTVSDPIIIEGTEWLSLKVHGQSFMLH 347 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 QIR V + LV + + + + P P GL + Sbjct: 348 QIRKMVALIMLVVRTGCPLGRIGETF--RKPRVNIPRGPGLGLLLE 391 >gi|323346109|gb|EGA80399.1| Pus1p [Saccharomyces cerevisiae Lalvin QA23] gi|323351939|gb|EGA84478.1| Pus1p [Saccharomyces cerevisiae VL3] Length = 508 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 39 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 98 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + + + + +N L + I + ++ V+K F R R Y Sbjct: 99 KGVHAGGNLISLKM--IIEDPDIKQKINEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 154 Query: 113 LYRIIT 118 Y + T Sbjct: 155 EYLLPT 160 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN-------SFGNLIEIRVVA 190 R + +G H+F F + S IR + V+ + I I++ Sbjct: 258 LAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHG 317 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +SF+ QIR V L+ + +A Q K P AP GL + Sbjct: 318 QSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ--KINIPKAPALGLLLE 367 >gi|323335274|gb|EGA76563.1| Pus1p [Saccharomyces cerevisiae Vin13] Length = 545 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 76 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 135 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + + + + +N L + I + ++ V+K F R R Y Sbjct: 136 KGVHAGGNLISLKM--IIEDPDIKQKINEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 191 Query: 113 LYRIIT 118 Y + T Sbjct: 192 EYLLPT 197 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN-------SFGNLIEIRVVA 190 R + +G H+F F + S IR + V+ + I I++ Sbjct: 295 LAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHG 354 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +SF+ QIR V L+ + +A Q K P AP GL + Sbjct: 355 QSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ--KINIPKAPALGLLLE 404 >gi|323302662|gb|EGA56468.1| Pus1p [Saccharomyces cerevisiae FostersB] Length = 544 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 75 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + + + + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKM--IIEDPDIKQKINEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 190 Query: 113 LYRIIT 118 Y + T Sbjct: 191 EYLLPT 196 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 12/125 (9%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN------ 178 + R + L R + +G H+F F + S IR + V+ Sbjct: 283 HRRRYRICAAKL--AKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIG 340 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I I++ +SF+ QIR V L+ + +A Q K P AP Sbjct: 341 DAQTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ--KINIPKAPAL 398 Query: 238 GLYFD 242 GL + Sbjct: 399 GLLLE 403 >gi|256272816|gb|EEU07786.1| Pus1p [Saccharomyces cerevisiae JAY291] Length = 544 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 75 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + + + + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKM--IIEDPDIKQKINEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 190 Query: 113 LYRIIT 118 Y + T Sbjct: 191 EYLLPT 196 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 12/125 (9%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN------ 178 + R + L R + +G H+F F + S IR + V+ Sbjct: 283 HRRRYRICAAKL--AKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIG 340 Query: 179 -SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I I++ +SF+ QIR V L+ + +A Q K P AP Sbjct: 341 DAQTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ--KINIPKAPAL 398 Query: 238 GLYFD 242 GL + Sbjct: 399 GLLLE 403 >gi|207340711|gb|EDZ68976.1| YPL212Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 544 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 75 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + + + + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKM--IIEDPDIKQKINEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 190 Query: 113 LYRIIT 118 Y + T Sbjct: 191 EYLLPT 196 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN-------SFGNLIEIRVVA 190 R + +G H+F F + S IR + V+ + I I++ Sbjct: 294 LAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHG 353 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +SF+ QIR V L+ + +A Q K P AP GL + Sbjct: 354 QSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ--KINIPKAPALGLLLE 403 >gi|6325044|ref|NP_015112.1| Pus1p [Saccharomyces cerevisiae S288c] gi|3122655|sp|Q12211|PUS1_YEAST RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|1370440|emb|CAA97927.1| PUS1 [Saccharomyces cerevisiae] gi|1403091|emb|CAA56698.1| pseudouridine synthase 1 [Saccharomyces cerevisiae] gi|151942589|gb|EDN60935.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789] gi|190407751|gb|EDV11016.1| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a] gi|259149945|emb|CAY86748.1| Pus1p [Saccharomyces cerevisiae EC1118] gi|285815332|tpg|DAA11224.1| TPA: Pus1p [Saccharomyces cerevisiae S288c] Length = 544 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 75 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + + + + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKM--IIEDPDIKQKINEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 190 Query: 113 LYRIIT 118 Y + T Sbjct: 191 EYLLPT 196 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN-------SFGNLIEIRVVA 190 R + +G H+F F + S IR + V+ + I I++ Sbjct: 294 LAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHG 353 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +SF+ QIR V L+ + +A Q K P AP GL + Sbjct: 354 QSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ--KINIPKAPALGLLLE 403 >gi|308161589|gb|EFO64028.1| Pseudouridylate synthase 1 [Giardia lamblia P15] Length = 467 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 75/224 (33%), Gaps = 37/224 (16%) Query: 4 YCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIF---LVTGEIVVVHG---AGRT 51 + + Y G+ Y G Q Q + +++G I AI L+ G + G RT Sbjct: 41 IAVALGYVGTRYSGSQWQAPSATHPDIRTVEGEIYTAIEAAGLLYGRDIKSIGWTRCSRT 100 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D V A V F V L + + ISI V +F A+ + R+ Sbjct: 101 DKSVSAAMAVFSFFGPGHLDLVQLLQP-----HLPKDISIFGTVRVPPKFSAKMACTSRT 155 Query: 112 YLYRI--------ITRQAPLALEKGRAWLIPKSLD-------CENMRIAAQHLVG--RHD 154 Y Y + + P + +A+ LD E +R A L RHD Sbjct: 156 YEYMMPLVFLLPSSHDKTPALCQDMQAFFSY--LDSPYSAESTETVREACSRLYTAQRHD 213 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 F + + IR + + + + FL + Sbjct: 214 ILDFLRLDDELQE-IRAQARVRASHDSPAVIFDTLLQPFLQQLV 256 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + ++FL QIR +G+L + G + L A Q + + AP L Sbjct: 314 ITICGQAFLMYQIRRMMGALVAILRGWIPVSFLYFAFQTRTKHLRISTAPSPYLLLKQPN 373 Query: 246 YS 247 Y Sbjct: 374 YE 375 >gi|19075946|ref|NP_588446.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe 972h-] gi|74627010|sp|O94396|PUS1_SCHPO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|4008551|emb|CAA22472.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe] gi|6469502|emb|CAB61835.1| pseudouridine synthase [Schizosaccharomyces pombe] Length = 534 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 13/132 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++ Y GSGY G Q +I+G + A + V + A RTD Sbjct: 44 RKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAARTD 103 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L L + +N +L +I + ++ F+ R R Y Sbjct: 104 KGVHAAGNVISLKL--IMEDEKLIEKVNEHL--PPSIRLWDVIRTINSFNPRTYCESRIY 159 Query: 113 LYRIITRQAPLA 124 Y + T Sbjct: 160 EYMVPTYAFVPP 171 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 8/107 (7%) Query: 142 MRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNS-----FGNLIEIRVVARSFLH 195 +R VG H+F F + R I F + I +V +SF+ Sbjct: 324 IRETLNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWISCKVHGQSFML 383 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 QIR + LV ++ A + K P P GL + Sbjct: 384 HQIRKMIALAILVVRTGCPVERIQDAF--KKTKINIPKGPGFGLLLE 428 >gi|322705939|gb|EFY97522.1| tRNA pseudouridine synthase [Metarhizium anisopliae ARSEF 23] Length = 612 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 13/148 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q + +I+ + KAI + RTD Sbjct: 115 RKVAVMIGYSGTGYKGMQVNGDEPTIERDLFRAFIDAKAISKANADDPRKSSLARCARTD 174 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +NA+L + I I + + F+ R Y Sbjct: 175 KGVHAAGNVISLKL--IIEDEDIVEKINAHL--PEQIRIWGIQRTNNSFNCYQYCDSRFY 230 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCE 140 Y + + + + L+ E Sbjct: 231 EYLLPSYCLLPPHPQTYLAKECEKLNKE 258 Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVAR 191 + ++ G ++F F S R I F VN + ++V + Sbjct: 391 LQRLQSVLDKYTGTYNFHNFTIQKTFSDPSARRHIKSFTVNPKPVIIGGTEWLSLKVHGQ 450 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR VG L+ + Q++K P AP GL + Sbjct: 451 SFMMHQIRKMVGLASLMVRCGTALDRVAD--SYQEQKMAIPKAPGLGLLLER 500 >gi|50303379|ref|XP_451631.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74637053|sp|Q6CWQ8|PUS1_KLULA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49640763|emb|CAH02024.1| KLLA0B02244p [Kluyveromyces lactis] Length = 553 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+ + +A + A RTD Sbjct: 99 RKVAVMIGYCGTGYHGMQYNPPNDTIEKELFEAFVRAGAISKANSTDLKKNGFQRAARTD 158 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +N L D I + ++S V+K F R R Y Sbjct: 159 KGVHAGGNVISLKL--IIEDPEVKEKINNEL--PDQIRVWDISRVNKAFDCRKMCSSRWY 214 Query: 113 LYRIIT 118 Y + T Sbjct: 215 EYLLPT 220 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 11/130 (8%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG--- 181 E RA+ I K + R A + G +F F S R + V+ Sbjct: 305 EHKRAYRISKER-LDRFRSALKQYEGTFNFHNFTLGKDFNDPSAKRFMKQITVSEPFVIG 363 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I++ +SF+ QIR + L+ + + K P AP Sbjct: 364 EAKTEWVSIKIHGQSFMLHQIRKMISMATLITRCFSPLERIRQ--AYGQEKINIPKAPAL 421 Query: 238 GLYFDSVEYS 247 GL ++ Y Sbjct: 422 GLLLEAPVYD 431 >gi|320532726|ref|ZP_08033515.1| hypothetical protein HMPREF9057_01391 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135064|gb|EFW27223.1| hypothetical protein HMPREF9057_01391 [Actinomyces sp. oral taxon 171 str. F0337] Length = 57 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Sbjct: 1 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTCALATVVREPVRLTVAGRTDAGVHA 57 >gi|312091557|ref|XP_003147023.1| hypothetical protein LOAG_11456 [Loa loa] gi|307757811|gb|EFO17045.1| hypothetical protein LOAG_11456 [Loa loa] Length = 236 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 14/126 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSG 54 Y +++ Y G Y G Q QK+ +++G + KA+ ++ A RTD Sbjct: 104 YALLLAYQGKKYNGMQVQKDFPTVEGELFKAMAKCGYISEDDILSPVRFAFQRAARTDRS 163 Query: 55 VHALRQVAHFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L E L A LNA L + I ++ + + F A + +R+ Sbjct: 164 VSAARQMCSMRLAPENHEYFLKTASDKLNAQL--PEEIRVMGVRRATRSFKAHKNCDKRT 221 Query: 112 YLYRII 117 Y Y + Sbjct: 222 YSYTLP 227 >gi|242776451|ref|XP_002478840.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC 10500] gi|218722459|gb|EED21877.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC 10500] Length = 580 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 66/204 (32%), Gaps = 26/204 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + ++I Y+G+GY G Q +I+G + A + + RTD Sbjct: 75 KVAVMIGYSGTGYHGMQLSPTEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTDR 134 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E + K +N L S I + IV K F R Y Sbjct: 135 GVHAAGNVVSLKLIVEDPD--IVKKINDNL--SPQIRVWGYEIVTKGFSCYQLCDSRMYE 190 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I T +P + Q D F + ID Sbjct: 191 YLIPTH-----------CFLPPHPSTHLGKKIVQFAEENEDMEGFLQRQEGVLDFWQNID 239 Query: 174 HFDVNSFGNLI--EIRVVARSFLH 195 + + EIR + + L+ Sbjct: 240 ESQIKPILEKVPEEIRRLVQRALY 263 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 10/125 (8%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG--- 181 RA+ IP+S + ++ A VG +F + + S R I F N Sbjct: 347 NAKRAYRIPQSR-LQRVQDALDKYVGTRNFHNYTIQKNFRDPSSKRVIKSFVANKEPIII 405 Query: 182 ---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + ++V +SF+ QIR V + L+ +E+ + P AP G Sbjct: 406 NGTEWVSLKVHGQSFMMHQIRKMVAMVALIVRCGCDPKIIEE--SYGPTRLSIPKAPGLG 463 Query: 239 LYFDS 243 L + Sbjct: 464 LLLEH 468 >gi|328350723|emb|CCA37123.1| tRNA pseudouridine synthase A [Pichia pastoris CBS 7435] Length = 516 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 13/131 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTG---EIVVVHGAGRTDS 53 + +I Y G+GY G Q +I+G + + AI + A RTD Sbjct: 91 KVACLIGYCGTGYHGMQLNPPQKTIEGDLFEAFVESGAISRDNSNDLKKSSFMRAARTDK 150 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V + + + +N+ L TI + +K F R R Y Sbjct: 151 GVHAAGNVISLKM--IIEDEDILEKINSKL--PPTIRVWGYERTNKNFDCRKMCSSRIYE 206 Query: 114 YRIITRQAPLA 124 Y + T Sbjct: 207 YLMPTFSFLPP 217 Score = 68.3 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 8/115 (6%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARS 192 E + A Q +G H+F F H + +S R + V+ + I++ +S Sbjct: 314 LELVNKAMQMYIGHHNFHNFTLGKHFKDASANRYMKEITVSEPFVIEGTEWVSIKIHGQS 373 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR + LV + +A Q+ + P AP GL + Y Sbjct: 374 FMLHQIRKMIAMAALVVRTGCPLGRITEAFQSS--RINIPKAPALGLLLEQPVYE 426 >gi|254566437|ref|XP_002490329.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA [Pichia pastoris GS115] gi|238030125|emb|CAY68048.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA [Pichia pastoris GS115] Length = 509 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 13/131 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTG---EIVVVHGAGRTDS 53 + +I Y G+GY G Q +I+G + + AI + A RTD Sbjct: 84 KVACLIGYCGTGYHGMQLNPPQKTIEGDLFEAFVESGAISRDNSNDLKKSSFMRAARTDK 143 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V + + + +N+ L TI + +K F R R Y Sbjct: 144 GVHAAGNVISLKM--IIEDEDILEKINSKL--PPTIRVWGYERTNKNFDCRKMCSSRIYE 199 Query: 114 YRIITRQAPLA 124 Y + T Sbjct: 200 YLMPTFSFLPP 210 Score = 68.3 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 8/115 (6%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARS 192 E + A Q +G H+F F H + +S R + V+ + I++ +S Sbjct: 307 LELVNKAMQMYIGHHNFHNFTLGKHFKDASANRYMKEITVSEPFVIEGTEWVSIKIHGQS 366 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR + LV + +A Q+ + P AP GL + Y Sbjct: 367 FMLHQIRKMIAMAALVVRTGCPLGRITEAFQSS--RINIPKAPALGLLLEQPVYE 419 >gi|322695818|gb|EFY87620.1| tRNA pseudouridine synthase [Metarhizium acridum CQMa 102] Length = 592 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 13/148 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q + +I+ + KAI + RTD Sbjct: 115 RKVAVMIGYSGTGYKGMQVNGDEPTIERDLFRAFIDAKAISKANADDPRKSSLARCARTD 174 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +NA+L + I I + + F+ R Y Sbjct: 175 KGVHAAGNVISLKL--IIEDEDIVDKINAHL--PEQIRIWGIQRTNNSFNCYQYCDSRFY 230 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCE 140 Y + + + + L+ E Sbjct: 231 EYLLPSYCLLPPHPQTYLAKECEKLNKE 258 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVAR 191 ++ G ++F F S R I F VN + ++V + Sbjct: 380 LRRLQQVLDKYTGTYNFHNFTIQKTFSDPSARRHIKSFTVNPKPIIIGDTEWLSLKVHGQ 439 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR VG L+ T + Q++K P AP GL + Sbjct: 440 SFMMHQIRKMVGLASLMVRCGTTLDRVGD--SYQEQKMAIPKAPGLGLLLER 489 >gi|156836479|ref|XP_001642300.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM 70294] gi|156112794|gb|EDO14442.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM 70294] Length = 562 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 77 RKVAVMVGYCGTGYHGMQYNPPNPTIEDALFKAFVQAGAISKANSNDLKKNGFMRAARTD 136 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + + + + +N L + I + N+ V+K F R R Y Sbjct: 137 KGVHAGGNLISLKM--IIEDPEIKQKINEEL--PNGIKVWNIERVNKAFDCRKMCGSRWY 192 Query: 113 LYRIIT 118 Y + T Sbjct: 193 EYLLPT 198 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 12/125 (9%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG--- 181 + R + + L R A +G H+F F + S IR + V+ Sbjct: 285 HRRRYRISDEKL--TKFRNAMNEYLGAHNFHNFTLGKDFKDPSAIRFMKEIRVSDPFVIG 342 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I I++ +SF+ QIR + LV + + +A Q K P AP Sbjct: 343 AAKTEWISIKIHGQSFMLHQIRKMISMATLVTRCGCPVSRISQAYGPQ--KINIPKAPAL 400 Query: 238 GLYFD 242 GL + Sbjct: 401 GLLLE 405 >gi|212532769|ref|XP_002146541.1| tRNA pseudouridine synthase, putative [Penicillium marneffei ATCC 18224] gi|210071905|gb|EEA25994.1| tRNA pseudouridine synthase, putative [Penicillium marneffei ATCC 18224] Length = 571 Score = 86.8 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 67/204 (32%), Gaps = 26/204 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + ++I Y+G+GY G Q +I+G + A + + RTD Sbjct: 76 KVAVMIGYSGTGYHGMQLSPTEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTDR 135 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E + + +N L S I + V K F R Y Sbjct: 136 GVHAAGNVVSLKLIVEDPD--IVQKINDNL--SPQIRVWGYETVTKGFSCYQLCDSRMYE 191 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I T +P + Q D F + + ID Sbjct: 192 YLIPTH-----------CFLPPHPSTHLGKKTVQLAEENEDMEGFLARQEGVLDFWQNID 240 Query: 174 HFDVNSFGNLI--EIRVVARSFLH 195 ++ + EIR + + L+ Sbjct: 241 ENEIKPILEKVPEEIRRLVQRALY 264 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 10/125 (8%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG--- 181 RA+ IP++ + ++ A +G +F + + S R I F N Sbjct: 338 NAKRAYRIPQNR-LQRVQDALDKYIGTRNFHNYTIQKTFRDPSSKRIIKSFVANKEPIII 396 Query: 182 ---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + ++V +SF+ QIR V + L+ +E+ K P AP G Sbjct: 397 NGTEWVSLKVHGQSFMMHQIRKMVAMVALIVRCGCDPKIIEE--SYGPTKLSIPKAPGLG 454 Query: 239 LYFDS 243 L + Sbjct: 455 LLLEH 459 >gi|154300700|ref|XP_001550765.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10] gi|150856545|gb|EDN31737.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10] Length = 631 Score = 86.8 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 13/136 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDS 53 + ++I Y G+GY G Q +I+G + KA I + + RTD Sbjct: 99 KVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPKKSALIRCARTDK 158 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N++L D I + + F+ R Y Sbjct: 159 GVHAAGNVLSLKL--IIEDPKVVENINSHL--PDQIRVWGIERTTGSFNCYQMCDSRWYE 214 Query: 114 YRIITRQAPLALEKGR 129 Y I T K Sbjct: 215 YLIPTYSFIPPHPKSF 230 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 9/110 (8%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVARS 192 E ++ A VG ++F + + + +S R I F + + + ++V +S Sbjct: 423 ERVQEALNQYVGTYNFHNYTILKSFKDASSKRHIKSFKIGTQPIIIHDTEWLSLKVHGQS 482 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 F+ QIR V LV +++ A K P AP GL + Sbjct: 483 FMMHQIRKMVAMAALVVRCASPMELIKETYTAA--KISIPKAPSLGLLLE 530 >gi|242066426|ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor] gi|241934333|gb|EES07478.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor] Length = 567 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 52 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRAAPRRYDWARAARTD 111 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P LNA L I V F A+ RR Y Sbjct: 112 KGVSAAAQVVSGRF--YVDPPGFIDRLNAQLAS--QIRAYGYVRVTNSFSAKKFCDRRRY 167 Query: 113 LYRII 117 LY + Sbjct: 168 LYLLP 172 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 E ++ VG H+F F + + R I F + + + VV +SF Sbjct: 352 ERFNRILKYYVGTHNFHNFTTRTKAEDPAAKRFIISFGADRVVSLDGIDFVRCEVVGQSF 411 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + QIR +G V + +D P AP GLY D Sbjct: 412 MLHQIRKMIGLAVAVMRNC-APETIYDVAFRKDVNLNVPTAPEVGLYLDE 460 >gi|302803171|ref|XP_002983339.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii] gi|300149024|gb|EFJ15681.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii] Length = 437 Score = 86.0 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 101/328 (30%), Gaps = 95/328 (28%) Query: 3 RYCMIIEYNGSGYFG---------WQRQKNGSSIQGSIEKAIFLVTG---------EIVV 44 + M I Y G+GY G + ++I+ ++KAI+ G V Sbjct: 31 KVAMWIGYVGTGYKGNHCSLFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHMKVG 90 Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVI-------LCKALNAYLKISDTISILNLSIV 97 + RTD GVH+L V + + +N +L I + + V Sbjct: 91 WARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADRINRHL--PQCIRVFGVVPV 148 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 K F R + RSY Y + + + + + K L E R+ + G H F Sbjct: 149 SKTFRPRMACSERSYDYFLP--ALCVGINQRVSTCEIKQL-LEQFRLQLKLFEGEHPFHN 205 Query: 158 FRSIHC------------------------------------------QASSPIRTIDHF 175 + Q SP + Sbjct: 206 YTIRRNYGKPKQQDLNWRTRTPIAADNSSSSEEEDEDGDADEPRLRVQQKPSPAYWLQEL 265 Query: 176 D--------------------VNSFGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKW 213 D + FG+ + +R V SF+ QIR +G+ V Sbjct: 266 DPTDRITSQHYRKIIRCSCGDIEKFGDTLALRVSVTGASFMVHQIRKMIGTAVAVTRKLL 325 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ +L + + P+AP EGL Sbjct: 326 PPDIIQMSL-CRHSRIVLPIAPCEGLTL 352 >gi|156084710|ref|XP_001609838.1| RNA pseudouridine synthase A 2 [Babesia bovis T2Bo] gi|154797090|gb|EDO06270.1| RNA pseudouridine synthase A 2, putative [Babesia bovis] Length = 295 Score = 85.6 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 68/237 (28%), Gaps = 85/237 (35%) Query: 2 IRYCMIIEYNGSGYFGW----------------------QRQKNG-SSIQGSIEKAIFLV 38 M +EY+G Y G+ +QK SI I +A+ ++ Sbjct: 54 TNIVMTVEYDGGEYSGFVGPNHFYNEEKAKMLATVVMPRTKQKGVLKSISNEISRAMAII 113 Query: 39 TG-------------------------------------EIVVVHGAGRTDSGVHALRQV 61 G + + RTD GVHA Sbjct: 114 HGYMPKSRKKKRTNCEPLTTELEENNEDDVHCPDTLPPERRFTLIASSRTDKGVHATETA 173 Query: 62 AHFDLVREWVP-----VILCKALNAYLKISDTISILNLSIVDK-QFHARFSAIRRSYLYR 115 + + P + +N L D I + + FH RF + + Y Y+ Sbjct: 174 CQYLSFDKEPPYNGDIDAIMDKVNRLL--PDDIRVTAMIHAPTLDFHVRFDNLGKHYTYK 231 Query: 116 IITRQAPLALEKGRAWL-----------------IPKSLDCENMRIAAQHLVGRHDF 155 + + P E+ W + + E+M+ A + G H+F Sbjct: 232 VDISETPNIFERKYYWQIMKDSQFRNTLMKKYNDVRQHFSFESMQKGANVIQGTHNF 288 >gi|254583001|ref|XP_002499232.1| ZYRO0E07106p [Zygosaccharomyces rouxii] gi|238942806|emb|CAR30977.1| ZYRO0E07106p [Zygosaccharomyces rouxii] Length = 537 Score = 85.6 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 13/126 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTD 52 + ++I Y G+GY G Q +I+ + AI + A RTD Sbjct: 75 RKVAVMIGYCGTGYHGMQHNPPNLTIESELFTAFVEAGAISKANSTDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + L + + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKL--IIEDPQIKEKINEKL--PEGIRVWDIKRVNKAFDCRKMCSSRWY 190 Query: 113 LYRIIT 118 Y + T Sbjct: 191 EYLLPT 196 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-------NLIEIRVVA 190 + R + +G H+F F + SS +R + V+ + I++ Sbjct: 294 LKKFRSTMEQYLGAHNFHNFTLGKDFKESSAVRYMKEIKVSEPFVIGDAKTEWVSIKIHG 353 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +SF+ QIR + L+ + + +A Q K P AP GL + Sbjct: 354 QSFMLHQIRKMISMATLMTRCGCPTDRISEAYGPQ--KLNIPKAPALGLLLE 403 >gi|253744083|gb|EET00338.1| Pseudouridylate synthase 1 [Giardia intestinalis ATCC 50581] Length = 465 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 79/222 (35%), Gaps = 35/222 (15%) Query: 4 YCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIF---LVTGEIVVVHG---AGRT 51 + + Y G+ Y G Q Q + +++G + AI L+ G + G RT Sbjct: 41 IAIALGYVGTRYSGSQWQAPSVTHPHICTVEGEVYAAIEAAGLLYGRDIKSIGWTRCSRT 100 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D V A V F L +AL +L ISI V +F+A+ + R+ Sbjct: 101 DKSVSAAMAVFSFFAPINLD---LVQALQPHL--PKDISIFGTVRVPPKFNAKMACTSRT 155 Query: 112 YLYRIITRQAPLALEKGRAWLIPK------SLD-------CENMRIAAQHLVG--RHDFT 156 Y Y + + + A L P L+ E ++ A L RHD Sbjct: 156 YEYIMPLAFLLPSSQDKTASLCPDMETFFSYLNSPLSTGGTETIKEACSRLYTAQRHDIL 215 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 F + + +R +S ++ + + FL I Sbjct: 216 DFLQLDDELRE-VRASLCASCDSPADM--FDTILQPFLQKLI 254 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + ++FL QIR +G+L + G T L A Q + + AP L Sbjct: 312 ITICGQAFLMYQIRRMMGALVAIVRGWIPVTFLYFAFQTRTKHLRMSTAPGHYLLLKQPN 371 Query: 246 YS 247 Y Sbjct: 372 YE 373 >gi|156048366|ref|XP_001590150.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980] gi|154693311|gb|EDN93049.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980 UF-70] Length = 599 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 13/136 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDS 53 + ++I Y G+GY G Q +I+G + KA I + + RTD Sbjct: 57 KVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPKKSALVRCARTDK 116 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E + + +N++L D I + + F+ R Y Sbjct: 117 GVHAAGNVLSLKLITEDP--NVVENINSHL--PDQIRVWGIERTTGSFNCYQMCDSRWYE 172 Query: 114 YRIITRQAPLALEKGR 129 Y I T K Sbjct: 173 YLIPTYSFIPPHPKSF 188 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVARS 192 + ++ A VG +++ + + S R I F + + ++V +S Sbjct: 391 QRVQEALNQYVGTYNYHNYTILKNYSDPSSRRHIKSFKIGPKPIIIHDTEWLSLKVHGQS 450 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 F+ QIR V LV +++ A K P AP GL + Sbjct: 451 FMMHQIRKMVAMAALVVRCASPMELIKETYTAA--KISIPKAPSLGLLLE 498 >gi|50548607|ref|XP_501773.1| YALI0C12749p [Yarrowia lipolytica] gi|74635069|sp|Q6CC39|PUS1_YARLI RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49647640|emb|CAG82083.1| YALI0C12749p [Yarrowia lipolytica] Length = 528 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 13/132 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +I Y G+GY G Q +I+G I +A + A RTD Sbjct: 85 RKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFVKAGAISQNNADDPKKSAFMRAARTD 144 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V + + + +N++L + + + +S +K F R R Y Sbjct: 145 KGVHAAGNVISLKM--IIEDENIVEKINSHL--PEQLRVWGVSRTNKAFECRKLCSSRVY 200 Query: 113 LYRIITRQAPLA 124 Y + T Sbjct: 201 EYLMPTYSFLNP 212 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 7/115 (6%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-----NLIEIRVVARS 192 +R + G H+F F + S +RT+ + + I++ +S Sbjct: 308 LAKIREILKIYEGTHNFHNFTLGKAFKDPSAMRTMKSLTCSDPFLIDGTEWVSIKIHGQS 367 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR + + L L + R P AP GL + Y Sbjct: 368 FMLHQIRKMISMVALSVRCNADPQKLIPQTFEKARINI-PKAPALGLLLERPVYD 421 >gi|294655697|ref|XP_002770167.1| DEHA2C04312p [Debaryomyces hansenii CBS767] gi|199430534|emb|CAG85917.4| DEHA2C04312p [Debaryomyces hansenii] Length = 528 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 15/133 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTG---------EIVVVHGAGRT 51 + +I Y G+GY G Q Q N +I+G + +A + A RT Sbjct: 72 KVACMIGYCGTGYNGMQIQNNLDVKTIEGDLFQAFVKAGAISPENADDLKKNGFMRAART 131 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHA V L + + +N L D I + + +K F R R Sbjct: 132 DKGVHAAGNVISCKL--IIEDEDILEKINKEL--PDQIRVWGIERTNKSFDCRKMCSSRV 187 Query: 112 YLYRIITRQAPLA 124 Y Y + T Sbjct: 188 YEYLLPTYSFLSP 200 Score = 62.5 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 9/127 (7%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF------RSIHCQASSPIRTIDHFDVNSF 180 + R++ + K E R A + G H+F F + + + T+ V Sbjct: 299 RRRSYSVSKER-LELFREAMKQYEGSHNFHNFTLGKLYKDPSARRYMKLTTVSDPFVIEG 357 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I++ +SF+ QIR + LV + ++ K P AP GL Sbjct: 358 TEWVSIKIHGQSFMLHQIRKMISMAVLVIRTGCPISRIQDCF--GPTKINIPKAPALGLL 415 Query: 241 FDSVEYS 247 ++ Y Sbjct: 416 LENPVYE 422 >gi|67539990|ref|XP_663769.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4] gi|40738761|gb|EAA57951.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4] gi|259479643|tpe|CBF70055.1| TPA: tRNA pseudouridine synthase, putative (AFU_orthologue; AFUA_2G08460) [Aspergillus nidulans FGSC A4] Length = 574 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 24/186 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + ++I Y+G+GY G Q +I+G + A + + RTD Sbjct: 80 KVAVLIGYSGTGYKGMQLSTTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCARTDK 139 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA + L+ E + + +N +L S I + + + +K F + R Y Sbjct: 140 GVHAAGNIVSLKLIVEDPD--IVQKINDHL--SPQIRVWGILVANKSFSSYQMCDSRIYE 195 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I + +P + + + D +++ + ++ ID Sbjct: 196 YLIPSH-----------CFLPPHPNTYLGKKLVEIAEKEGDLEAYKARQEEVANYWEDID 244 Query: 174 HFDVNS 179 + Sbjct: 245 ERVIKP 250 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 L+ R + IP + ++ A VG +F + + S R I F +N Sbjct: 331 LKARREYRIPATR-LARIQQALDKYVGTKNFYNYTIQKQYRDPSAKRHIKSFKLNPEPII 389 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V +V + + K P AP Sbjct: 390 IDGTEWLSLKVHGQSFMMHQIRKMVAMATMVVRCGCDPARIND--SYGEFKMAIPKAPGL 447 Query: 238 GLYFDS 243 GL + Sbjct: 448 GLLLER 453 >gi|323331140|gb|EGA72558.1| Pus1p [Saccharomyces cerevisiae AWRI796] Length = 465 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 13/120 (10%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVV---VHGAGRTDSGVHAL 58 + Y G+GY G Q +I+ ++ K AI + A RTD GVHA Sbjct: 2 VGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGVHAG 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + + + + +N L + I + ++ V+K F R R Y Y + T Sbjct: 62 GNLISLKM--IIEDPDIKQKINEKL--PEGIRVWDIERVNKAFDCRKMCSSRWYEYLLPT 117 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVN-------SFGNLIEIRVVA 190 R + +G H+F F + S IR + V+ + I I++ Sbjct: 215 LAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHG 274 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +SF+ QIR V L+ + +A Q K P AP GL + Sbjct: 275 QSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ--KINIPKAPALGLLLE 324 >gi|327353057|gb|EGE81914.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ATCC 18188] Length = 610 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 24/181 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDS 53 + +++ Y+GSGY G Q +I+G + A I + + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDK 181 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L S I + + I +K F + R Y Sbjct: 182 GVHAAGNVVSLKL--IVEDSDIVQKINEQL--SPQIRVWGIEITNKSFSSYHLCDSRIYE 237 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I T SL + + IA Q +D ++ + ++ + +D Sbjct: 238 YLIPTHCFLPP-------HPSTSLGQKLVEIAEQ----ENDLEGYKQRQAEVATYWKEVD 286 Query: 174 H 174 Sbjct: 287 E 287 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 L+ RA+ IPK + + A VG +F + + +S R I F ++ Sbjct: 376 LDAKRAYRIPKER-MDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLI 434 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V + LV + + + D K P AP Sbjct: 435 INGTEWLSLKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYE--DHKIAIPKAPGL 492 Query: 238 GLYFDS 243 GL + Sbjct: 493 GLLLER 498 >gi|239606367|gb|EEQ83354.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ER-3] Length = 596 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 24/181 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDS 53 + +++ Y+GSGY G Q +I+G + A I + + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDK 181 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +N L S I + + I +K F + R Y Sbjct: 182 GVHAAGNVVSLKL--IVEDSDIVQKINEQL--SPQIRVWGIEITNKSFSSYHLCDSRIYE 237 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I T SL + + IA Q +D ++ + ++ + +D Sbjct: 238 YLIPTHCFLPP-------HPSTSLGQKLVEIAEQ----ENDLEGYKQRQAEVATYWKEVD 286 Query: 174 H 174 Sbjct: 287 E 287 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 L+ RA+ IPK + + A VG +F + + +S R I F ++ Sbjct: 376 LDAKRAYRIPKER-MDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLI 434 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V + LV + + + D K P AP Sbjct: 435 INGTEWLSLKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYE--DHKIAIPKAPGL 492 Query: 238 GLYFDS 243 GL + Sbjct: 493 GLLLER 498 >gi|322821113|gb|EFZ27528.1| hypothetical protein TCSYLVIO_6263 [Trypanosoma cruzi] Length = 602 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 24/155 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHG 47 + +I Y G Y G Q +++ + +A+ + + Sbjct: 68 RKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWER 127 Query: 48 AGRTDSGVHALRQVAHFDL--------VREWVPVILCKALNAYLKISDTISILNLSIVDK 99 A RTD GVHALR V ++ E+ P + L + I + + V + Sbjct: 128 ASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRIL--MTVLPHDIVVYEIVPVTR 185 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 F+A R+Y Y + T E R + P Sbjct: 186 SFNAYMLCGARTYEYYLPTFALMSLDEYSRDYFPP 220 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ I + +SF+ QIR +G++ + + L L + + P+AP GL+ Sbjct: 464 EVVRIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPANGLFL 523 >gi|297723909|ref|NP_001174318.1| Os05g0279300 [Oryza sativa Japonica Group] gi|255676206|dbj|BAH93046.1| Os05g0279300 [Oryza sativa Japonica Group] Length = 133 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ M+I Y+G+ + GWQ Q + +IQ SIE A+ +T + + + GAGRTD+GVHA Sbjct: 62 KWRMVIAYDGTKFKGWQYQPSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAWG 121 Query: 60 QVAHF 64 H Sbjct: 122 GAFHH 126 >gi|224126927|ref|XP_002319961.1| predicted protein [Populus trichocarpa] gi|222858337|gb|EEE95884.1| predicted protein [Populus trichocarpa] Length = 445 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 28/178 (15%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + + + Y G+ Y G Q+Q + +I+G +E+AI+ G + + R Sbjct: 33 KVALRVGYVGTDYRGLQKQHDQHSLLTIEGELERAIYEAGGIRESNYGNLNKISWARSSR 92 Query: 51 TDSGVHALRQVAHFDLVREWVPVI-------LCKALNAYLKISDTISILNLSIVDKQFHA 103 TD GVH+L + L K +N+YL D+I +L++ K F Sbjct: 93 TDKGVHSLATTITMKMEIPENAWKDDLYGMVLAKHVNSYL--PDSIRVLSILPAQKSFDP 150 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFR 159 R R Y Y + P + ++ +D + G H F + Sbjct: 151 RRECDIRKYSYLL-----PAEVIGIKSHFSMAEIDDHISDFNNILNAFEGDHPFHNYT 203 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + +EI + SF+ QIR VG+ V + +L R PLAP E L Sbjct: 304 DFVEISIWGESFMLHQIRKMVGTAVAVKRKVLPRDLIMLSLTKFSR-IVLPLAPSEVLIL 362 >gi|242062118|ref|XP_002452348.1| hypothetical protein SORBIDRAFT_04g024105 [Sorghum bicolor] gi|241932179|gb|EES05324.1| hypothetical protein SORBIDRAFT_04g024105 [Sorghum bicolor] Length = 90 Score = 84.1 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 3/61 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHALR 59 ++ M+I Y+G+ + GWQ Q + +IQ +E A+ + + + + GAGRTD+GVHA Sbjct: 29 KWRMVIAYDGTKFKGWQYQPSIPTIQYFLEDALICITKLDRKKLCLVGAGRTDTGVHAWG 88 Query: 60 Q 60 Q Sbjct: 89 Q 89 >gi|261332259|emb|CBH15253.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 573 Score = 84.1 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 20/153 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHG 47 + +I Y G Y G Q N +++ + +A+ + + Sbjct: 33 RKVAIIFGYIGERYCGLQWNHLPNYPTVEEELLRALRRADMISEENYAQQKVQQKLNWER 92 Query: 48 AGRTDSGVHALRQVAHFDLVREW-----VPVILCKALNAYLK-ISDTISILNLSIVDKQF 101 A RTD GVHALR V +++ + + +A + + I + + V + F Sbjct: 93 ASRTDKGVHALRNVFSLNVMLPYAKDSTSEFDVGEARRLLTEALPSDIVVYEIIPVTRSF 152 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +A R Y Y + T + E + P Sbjct: 153 NAYMMCGSRKYEYYLPTFAFMNSEEYSNIYFPP 185 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ I + +SFL QIR +G++ + L + + P+ P GL+ Sbjct: 435 EVVRIELSGQSFLFNQIRKMIGTVASMCAAGLPPDYLRDHFLNKAVRCGTPMVPANGLFL 494 Query: 242 D 242 Sbjct: 495 T 495 >gi|71000998|ref|XP_755180.1| tRNA pseudouridine synthase [Aspergillus fumigatus Af293] gi|66852818|gb|EAL93142.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus Af293] gi|159129271|gb|EDP54385.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus A1163] Length = 577 Score = 84.1 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 24/186 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + ++I Y G+GY G Q +I+G + A + + RTD Sbjct: 80 KVAVLIGYAGTGYHGMQLSDKEKTIEGDLFTAFVAAGAISKANAADPKKSSLVRCARTDK 139 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L L K +N L I + ++ + +K F R Y Sbjct: 140 GVHAAGNVVSLKL--IIEDPDLIKKINEKLC--PQIRVWDIQVTNKGFSCYQMCDSRVYE 195 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I + R + D +R+ + ++ +D Sbjct: 196 YLIPSYCFLPPHPSTY-----------LGRKIVELAEKEGDLEAYRARQEEVATYWEDVD 244 Query: 174 HFDVNS 179 + + Sbjct: 245 NERIKP 250 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 16/128 (12%) Query: 126 EKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 E RA+ IP LD ++ VG ++F + S R I F V+ Sbjct: 333 EAKRAYRIPVARLD--RLQATLDKYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPII 390 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAP 235 + ++V +SF+ QIR V LV G D ++ + + K P AP Sbjct: 391 INGTEWLSLKVHGQSFMMHQIRKMVAMATMLVRAGC----DPQRIVDSYGPTKIAIPKAP 446 Query: 236 PEGLYFDS 243 GL + Sbjct: 447 GLGLLLER 454 >gi|260944536|ref|XP_002616566.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720] gi|238850215|gb|EEQ39679.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720] Length = 229 Score = 84.1 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 17/124 (13%) Query: 8 IEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG----------EIVVVHGAGRTDSGV 55 I Y G+GY G Q Q + +I+ I KA F+ G + A RTD GV Sbjct: 2 IGYCGTGYNGMQIQNNPDVKTIEAEIFKA-FIAAGAVSQENSTDLKKNGFMRAARTDKGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA V L + +N++L + I + + V++ F R R Y Y Sbjct: 61 HAAGNVISCKL--ILEDEDIMHKINSHL--PEKIRLWGIERVNRSFDCRKLCSSRVYEYL 116 Query: 116 IITR 119 + T Sbjct: 117 LPTH 120 >gi|255935685|ref|XP_002558869.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583489|emb|CAP91502.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255] Length = 548 Score = 84.1 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 13/136 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q + +I+G + A+ V + RTD Sbjct: 84 KVALLMGYSGTGYSGMQLNEQQRTIEGDLFTALVNVGAVSKANAADPKKSSFVRCARTDK 143 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V + + + +NA L S I + + K F R Y Sbjct: 144 GVHAAGNVVSLKM--IVEDEDIIQKINAEL--SPQIRVWGYEVTSKSFSCYQMCDSRVYE 199 Query: 114 YRIITRQAPLALEKGR 129 Y + + Sbjct: 200 YLMPSHCLVPPHPSTY 215 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFG-- 181 L RA+ P S ++ G +F + S R I F VN+ Sbjct: 300 LTAKRAYRAPASR-IARLQECLNRYEGTKNFHNYTIQKTHKDPSAKRHIKSFKVNTTPII 358 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V +V + + + P AP Sbjct: 359 INGTEWLSLKVHGQSFMMHQIRKMVAMATMVVRSGCHPDRITE--TYGPERIAIPKAPGL 416 Query: 238 GLYFDS 243 GL + Sbjct: 417 GLLLER 422 >gi|71664275|ref|XP_819120.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70884407|gb|EAN97269.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 621 Score = 84.1 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 24/155 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHG 47 + +I Y G Y G Q +++ + +A+ + + Sbjct: 87 RKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWER 146 Query: 48 AGRTDSGVHALRQVAHFDL--------VREWVPVILCKALNAYLKISDTISILNLSIVDK 99 A RTD GVHALR V ++ E+ P + L + I + + V + Sbjct: 147 ASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRIL--MTVLPHDIVVYEIVPVTR 204 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 F+A R+Y Y + T E R + P Sbjct: 205 SFNAYMLCGARTYEYYLPTFALMSLDEYSRDYFPP 239 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 15/102 (14%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 E MR QH+ G DF++ V + ++ I + +SF+ QIR Sbjct: 456 EKMREHMQHVYG--DFSSGGVEGS-------------VKTGLEVVRIELHGQSFMLNQIR 500 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +G++ + + L L + + P+AP GL+ Sbjct: 501 KMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPANGLFL 542 >gi|302412567|ref|XP_003004116.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102] gi|261356692|gb|EEY19120.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102] Length = 553 Score = 83.3 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 80/298 (26%), Gaps = 101/298 (33%) Query: 3 RY-CMIIEYNGSGYFGWQRQKNGS--SIQGS------------------------IEK-- 33 RY + + Y G Y G++ Q++ +I+ + +E+ Sbjct: 79 RYVALRLAYLGKNYNGFEHQQSAVQATIESALWRLWPGHRPPPPQQQAPAKTAAQLEEEA 138 Query: 34 -----AIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREW-----------VPVILCK 77 A+ + + V A +Q + CK Sbjct: 139 RKKAEALQEKQKQQQQDGQGDVSMQDVAAEQQQQQQQQPPSPPPAPKPWDPIKDELPYCK 198 Query: 78 ALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIITRQAPLALE---------- 126 LN L I IL + F ARFS R Y Y A E Sbjct: 199 TLNRLL--PPDIRILAWCPSTPEGFSARFSCTERQYRYYFTQPAFAPAPEGLTPPKGPSQ 256 Query: 127 ---------KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHF 175 LD + MR AA+ G HDF F + Q ++ +R + Sbjct: 257 PRKKKDAAPPPPPRPKVGYLDIDAMRAAAKKFEGLHDFRNFCKVDGGKQLTNFMRRMFEA 316 Query: 176 DVNSFGN--------------------------------LIEIRVVARSFLHTQIRSF 201 D+ + + + V +FL QIR Sbjct: 317 DIVEVDDVASAVPYLSGAAFAQPETAAHGGGGGGGVMPKVYYLHVRGSAFLWHQIRHM 374 >gi|295660198|ref|XP_002790656.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] gi|226281531|gb|EEH37097.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] Length = 600 Score = 83.3 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 24/182 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q + +I+G + A I + + RTD Sbjct: 106 RKVAVLLGYSGSGYHGMQLSQTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 165 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +N +L S I + + + +K F + R Y Sbjct: 166 KGVHAAGNVVSLKL--IVEDSNVVQKINNHL--SPQIRVWGIEVTNKSFSSYQLCDSRVY 221 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y I T + A+ +D + + ++ + Sbjct: 222 EYLIPTHCFLPPHPSTYLGQ--------KLVEIAEM---ENDLEGYNQRQAEVATYWEKV 270 Query: 173 DH 174 D Sbjct: 271 DE 272 Score = 65.6 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 LE RA+ IPK + + A VG +F + +S R I F ++ Sbjct: 366 LEAKRAYRIPKER-IDRINDALDLYVGTRNFHNYTIQKSFCEASAKRHIKSFKISRDPVI 424 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V + +V + + D+K P AP Sbjct: 425 INGTEWLSLKVHGQSFMMHQIRKMVAMVAMVVRCGCDIQRIPE--TYGDQKIAIPKAPGL 482 Query: 238 GLYFDS 243 GL + Sbjct: 483 GLLLER 488 >gi|71413504|ref|XP_808888.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70873184|gb|EAN87037.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 634 Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 24/155 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHG 47 + +I Y G Y G Q +++ + +A+ + + Sbjct: 100 RKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWER 159 Query: 48 AGRTDSGVHALRQVAHFDL--------VREWVPVILCKALNAYLKISDTISILNLSIVDK 99 A RTD GVHALR V ++ E+ P + L + I + + V + Sbjct: 160 ASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRIL--MTVLPHDIIVYEIVPVTR 217 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 F+A R+Y Y + T E R + P Sbjct: 218 SFNAYMLCGARTYEYYLPTFALMSLDEYSRDYFPP 252 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ I + +SF+ QIR +G++ + + L L + + P+AP GL+ Sbjct: 496 EVVRIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPANGLFL 555 >gi|302893420|ref|XP_003045591.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256726517|gb|EEU39878.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 616 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q N +I+ + K AI + + RTD Sbjct: 114 RKVAVMIGYAGTGYKGMQVNGNEKTIEADLFKAFVAAGAISKANADDPKKSSLVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +NA L + I I + + F + R Y Sbjct: 174 KGVHAAGNVISLKL--IIEDEDIIDKINAEL--PEQIRIWGIQRTNNAFSCYQTCDSRWY 229 Query: 113 LYRII 117 Y + Sbjct: 230 EYLMP 234 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 29/152 (19%) Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + A + A +R Y RI T + E ++ A G +F + Sbjct: 380 RDIKAAYVAAKRRY--RISTGR------------------LERLQEALNKYNGTRNFHNY 419 Query: 159 RSIHCQ-ASSPIRTIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 +S R I F VN + ++V +SF+ QIR VG L+ Sbjct: 420 TVQKSYFDASAKRHIKSFVVNPKPIIINNTEWLSLKVHGQSFMMHQIRKMVGLASLIVRC 479 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +++ Q++K P AP GL + Sbjct: 480 GTPLKRMDE--SYQNQKMAIPKAPGLGLLLER 509 >gi|242040995|ref|XP_002467892.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor] gi|241921746|gb|EER94890.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor] Length = 520 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 24/178 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 R + I Y G+ Y G Q+Q+ S+I+ +E AIF G + V + R Sbjct: 78 RVVLRIGYIGTEYRGLQKQRELGVDSTIESVLESAIFKSGGILESNYGKLQKVGWERSSR 137 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + E P + A + D + + ++ + F R Sbjct: 138 TDKGVHSLATMISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVRR 197 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN--MRIAAQHLVGRHDFTTFRSI 161 + R Y Y + ++ G + P+ + + G H F + + Sbjct: 198 ECLYREYFYLLPAEVI--GIKDGYS---PEEIQEHLSEFNSILKGFEGNHPFHNYTAR 250 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ + SF+ QIR VG+ V G +E +L R P+AP E L Sbjct: 362 QFVELTICGVSFMLHQIRKMVGTAVAVKRGLLPKDIIELSLAKFSR-IVLPIAPSEVLIL 420 Query: 242 DS 243 Sbjct: 421 KD 422 >gi|241956578|ref|XP_002421009.1| tNA-uridine isomerase, putative; tRNA pseudouridine synthase, putative; tRNA pseudouridylate synthase, putative [Candida dubliniensis CD36] gi|223644352|emb|CAX41165.1| tNA-uridine isomerase, putative [Candida dubliniensis CD36] Length = 488 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 15/128 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---------VTGEIVVVHGAGR 50 + +++ Y GSGY G Q Q N +I+ I A+ V + A R Sbjct: 39 RKVAVMLGYCGSGYNGMQVQNDPNVKTIEKDIYDAMTKAGAISLENSVDLKKSGFQRAAR 98 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V + + +N L I I + K F R R Sbjct: 99 TDKGVHAAGNVISLKM--IIEDPNIINKINDLL--PKQIRIWGIQRTTKGFDCRKCCSSR 154 Query: 111 SYLYRIIT 118 Y Y + T Sbjct: 155 IYEYLLPT 162 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 8/107 (7%) Query: 143 RIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHF-----DVNSFGNLIEIRVVARSFLHT 196 R + G H+F F + +S R I V I I++ +SF+ Sbjct: 273 REVMKQYEGTHNFHNFTIGKPFKDTSANRFIIKTLISDPFVIEGTEWISIKIHGQSFMLH 332 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 QIR + L+ S + Q++ K P AP GL ++ Sbjct: 333 QIRKMIAMATLIIRLNLPSNIINNFFQSK--KINIPKAPALGLLLEN 377 >gi|169839443|ref|ZP_02872631.1| tRNA pseudouridine synthase A [candidate division TM7 single-cell isolate TM7a] Length = 68 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +I +Y+GS + G+QRQK N ++QG IEK I + + + +GRTD GVHA+ Sbjct: 4 RNVKIIYQYDGSKFLGFQRQKDNNVKTVQGEIEKVILKTFSQNINMISSGRTDKGVHAME 63 Query: 60 QVAHF 64 QV++F Sbjct: 64 QVSNF 68 >gi|116208668|ref|XP_001230143.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51] gi|88184224|gb|EAQ91692.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51] Length = 584 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 64/199 (32%), Gaps = 26/199 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + A + + RTD Sbjct: 108 RKVAVLIGYAGTGYHGIQINHKEKTIEGDLFSAFVAAGAISKANADDPKKSSLVRCARTD 167 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +N +L + I I + F A + R Y Sbjct: 168 KGVHAAGNVLSLKL--IVEDEDIVTKINEHL--PEQIRIWGIHRTSNGFSAYQACESRWY 223 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRT 171 Y L + L P+ RIAA G +D + Sbjct: 224 EY----------LMPSYSLLPPQPHSFLGKRIAASAKEQGVYD--EYMERLGDVKDFWDE 271 Query: 172 IDHFDVNSFGNLIEIRVVA 190 ++ D+ ++ V A Sbjct: 272 VEKNDIEPIFEGLDADVKA 290 Score = 65.2 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 9/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFG------NLIEIRVVAR 191 E ++ A +G ++ + + +S +R I F VN+ + + V + Sbjct: 370 IEKLQQALNSYLGTRNYHNYTVMKSHKDASAMRHIKSFQVNTTPITIGDTEWLSLMVHGQ 429 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR V +V + + + R+ P AP GL + Sbjct: 430 SFMMHQIRKMVAMAVMVVRCGAPLSTISE--SYGPRRISIPKAPGLGLMLER 479 >gi|46124417|ref|XP_386762.1| hypothetical protein FG06586.1 [Gibberella zeae PH-1] Length = 602 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q N +I+ + K AI + + RTD Sbjct: 107 RKVAVMIGYAGTGYKGMQVNGNEKTIEADLFKAFVAAGAISKANADDPKKSSLVRCARTD 166 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + +NA L + I I L + F + R Y Sbjct: 167 KGVHAAGNVISLKL--IIEDEDIVDKINAEL--PEQIRIWGLQRTNNAFSCYQTCDSRWY 222 Query: 113 LYRII 117 Y + Sbjct: 223 EYLMP 227 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 29/152 (19%) Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + A + A +R Y R+ T + E ++ A G +F + Sbjct: 365 RDIKAAYMAAKRRY--RVSTER------------------LERLQEALNMYNGTRNFHNY 404 Query: 159 RSIHCQ-ASSPIRTIDHFDVNSFG------NLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 +S R I F VN + ++V +SF+ QIR VG L+ Sbjct: 405 TVQKSFFDASAKRHIKSFIVNPKPIIINDTEWLSLKVHGQSFMMHQIRKMVGLASLIVRC 464 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +++ Q++K P AP GL + Sbjct: 465 GTPMERIKE--SYQNQKMAIPKAPGLGLLLER 494 >gi|115442996|ref|XP_001218305.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114188174|gb|EAU29874.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1199 Score = 81.8 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 13/136 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A + + RTD Sbjct: 80 KVAVLLGYSGTGYKGMQLSDTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCARTDK 139 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E + + +N L S I + ++ + +K F A R Y Sbjct: 140 GVHAAGNVVSLKLIVEDPD--IVQKINEKL--SPQIRVWDILVANKSFSAYQMCDSRIYE 195 Query: 114 YRIITRQAPLALEKGR 129 Y I T Sbjct: 196 YLIPTYCFLPPHPSTY 211 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG---- 181 RA+ IP S +++A + VG ++F + +S R I F ++ Sbjct: 331 AKRAYRIPSSR-LTRVQVALEKYVGTNNFWNYTIQKTFTDASAKRHIKSFKLDPKPVIIN 389 Query: 182 --NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++V +SF+ QIR V LV +E K P AP GL Sbjct: 390 GTEWLSLKVHGQSFMMHQIRKMVAMATLVVRCGCDPKRIED--AYGPTKIAIPKAPGLGL 447 Query: 240 YFDS 243 + Sbjct: 448 LLER 451 >gi|171685180|ref|XP_001907531.1| hypothetical protein [Podospora anserina S mat+] gi|170942551|emb|CAP68202.1| unnamed protein product [Podospora anserina S mat+] Length = 615 Score = 81.8 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G I AI + + RTD Sbjct: 120 RKVAVLIGYAGTGYHGIQINHKEKTIEGDIFAAFVAAGAISKANADDPKKSSLVRCARTD 179 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +N++L + I I + F S R Y Sbjct: 180 KGVHAAGNVLSLKL--IVEDEDIVEKINSHL--PEQIRIWGIQRTVNAFSCYQSCDSRWY 235 Query: 113 LYRII 117 Y + Sbjct: 236 EYLMP 240 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 9/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVAR 191 E ++ A +G H++ + + + +S R I F+ N+ + ++V + Sbjct: 401 IERLQQALNLYLGTHNYHNYTVMKSFKDASAKRHIKSFEANTTPIQIGDTEWLSLKVHGQ 460 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR V +V +++ R+ P AP GL + Sbjct: 461 SFMMHQIRKMVAMAVMVVRCGAPLDLIKE--SYGPRRISIPKAPGLGLMLER 510 >gi|119480651|ref|XP_001260354.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL 181] gi|119408508|gb|EAW18457.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL 181] Length = 577 Score = 81.4 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 24/186 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + ++I Y G+GY G Q +I+G + A + + RTD Sbjct: 80 KVAVLIGYAGTGYHGMQLSDKEKTIEGDLFTAFVAAGAISKANAADPKKSSLVRCARTDK 139 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E L K +N L I + ++ + +K F R Y Sbjct: 140 GVHAAGNVVSLKLIVEDPD--LIKKINEKLC--PQIRVWDIQVTNKGFSCYQMCDSRVYE 195 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I + R + D +++ + ++ +D Sbjct: 196 YLIPSYCFLPPHPSTY-----------LGRKIVELAEKEGDLEAYKARQEEVATYWEDVD 244 Query: 174 HFDVNS 179 + + Sbjct: 245 NERIKP 250 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 14/127 (11%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG--- 181 E RA+ IP + + ++ VG ++F + S R I F V+ Sbjct: 333 EAKRAYRIPAAR-LDRLQATLDKYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIII 391 Query: 182 ---NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAPP 236 + ++V +SF+ QIR V LV G D ++ + + K P AP Sbjct: 392 NGTEWLSLKVHGQSFMMHQIRKMVAMATMLVRAGC----DPQRIVDSYGPTKIAIPKAPG 447 Query: 237 EGLYFDS 243 GL + Sbjct: 448 LGLLLER 454 >gi|255081298|ref|XP_002507871.1| predicted protein [Micromonas sp. RCC299] gi|226523147|gb|ACO69129.1| predicted protein [Micromonas sp. RCC299] Length = 523 Score = 81.4 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 89/278 (32%), Gaps = 57/278 (20%) Query: 23 NGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQVAHFDLV--REWVPVILCKA 78 S+ SI++A+ + + + ++H AGRTD GVHA Q + P + A Sbjct: 237 GERSVSASIQRALRPLFSSDKERLIHSAGRTDKGVHAAAQCFSVWSNAKDTFTPRNVRDA 296 Query: 79 LNAYLKISDTIS--ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 L A+ + + ++ V FHA F A R Y+Y + R E G + + Sbjct: 297 LVAHPAHAAGAWRVVGDVEEVSDAFHATFCATWRRYVYILPMRSLGDEEENGLS---NVA 353 Query: 137 LDCENMRIAAQHLVGR-HDFTTFRSIHCQASSPIRTIDHFDVNS---------------- 179 +D L G+ D + F + Sbjct: 354 VDPAATNAMLNALEGKSMDMSAFARATPPGKDSTCFVKVARAFEATVPASKGAERGVGRG 413 Query: 180 -------------------------------FGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 ++ + +VA FL +R+ V + Sbjct: 414 ARRRKSAGFSEDGGLGVGGGGGGDGGPPNSTMERVLVVELVADRFLRKMVRTLVATAVRE 473 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L + +A +R P APPEGL F V Y Sbjct: 474 AATGARGDVLLRLARAGERAATAPPAPPEGLIFAGVGY 511 >gi|194697948|gb|ACF83058.1| unknown [Zea mays] Length = 516 Score = 81.4 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 17/132 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 R + I Y G+ Y G Q+Q+ S+I+ +E AIF G + + + R Sbjct: 78 RVVLRIGYVGTDYRGLQKQQELGVDSTIESVLESAIFKSGGILESNYGKLQKIGWERSSR 137 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + E P + A + D + + ++ + F R Sbjct: 138 TDKGVHSLATMISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVRR 197 Query: 106 SAIRRSYLYRII 117 + R Y Y + Sbjct: 198 ECLYREYFYLLP 209 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ + SF+ QIR VG+ V G +E +L R P+AP E L Sbjct: 363 QFVELTICGVSFMLHQIRKMVGTAVTVKRGLLPRDIIELSLAKFSR-IVLPIAPSEVLVL 421 Query: 242 DS 243 Sbjct: 422 KD 423 >gi|302417130|ref|XP_003006396.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102] gi|261353998|gb|EEY16426.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102] Length = 439 Score = 81.4 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 22/140 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRT 51 M+R +GY+G Q + +I+G + KA I + + RT Sbjct: 51 MMR---------TGYYGLQINWDEKTIEGDLFKAFIAAGAISKANADDPKKSSLSRCART 101 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHA + L + +NA+L D I + L F A + R Sbjct: 102 DKGVHAAGNLISLKL--IIEDDDIVDKINAHL--PDQIRVWGLQRTSNSFSAYQACDSRW 157 Query: 112 YLYRIITRQAPLALEKGRAW 131 Y Y + T + W Sbjct: 158 YEYLLPTYCLLPSHPDSFLW 177 Score = 45.6 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVN------S 179 RA+ + + ++ A VG ++F + + S R I F VN Sbjct: 299 AKRAYQVTNER-LDQLQAALDQYVGTYNFHNYTIQKSFKDPSAKRHIKSFQVNKTPIQIR 357 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 + I+V +SF+ QIR + LV Sbjct: 358 DTQWVSIKVHGQSFMMHQIRKMISMATLV 386 >gi|255553385|ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis] gi|223543132|gb|EEF44666.1| pseudouridylate synthase, putative [Ricinus communis] Length = 377 Score = 81.4 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 27/189 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + + + Y G+ Y G Q+Q++ S+I+ +E AIF G + + R Sbjct: 55 KVVLRVGYVGTDYRGLQKQEDEHSLSTIEAELECAIFKAGGILDSNYGNLHKIAWARSSR 114 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + + P + A + D I I ++ K F R Sbjct: 115 TDKGVHSLATMISMKMEIPENAWKEDPNGIALAECVNYYLPDNIRIFSILPSQKSFDPRR 174 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD--CENMRIAAQHLVGR---HDFTTFRS 160 R Y Y + P + + +D + G H++T Sbjct: 175 ECNLRKYSYLL-----PAEIIGIKGHFTSAEIDNHISDFNDILNAFEGEHPFHNYTIRSK 229 Query: 161 IHCQASSPI 169 Q + I Sbjct: 230 YRKQYPTAI 238 >gi|121698285|ref|XP_001267772.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1] gi|119395914|gb|EAW06346.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1] Length = 568 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 24/186 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + ++I Y G+GY G Q +I+G + A + + RTD Sbjct: 80 KVAVLIGYAGTGYHGMQLSDKEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTDK 139 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E + K +N L I + ++ + +K F R Y Sbjct: 140 GVHAAGNVVSLKLIVEDPD--IVKKINEQLC--PQIRVWDVQVTNKGFSCYQMCDSRVYE 195 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I + R + D ++ + ++ ID Sbjct: 196 YLIPSYCFLPPHPSTY-----------LGRKIVELAEKEGDLEGLKARQEEVATYWNDID 244 Query: 174 HFDVNS 179 + + Sbjct: 245 NERIKP 250 Score = 55.2 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 14/127 (11%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFG--- 181 E RA+ IP S+ + ++ +G ++F + S R I F V+ Sbjct: 322 EAKRAYRIP-SIRLDRLQATLDKYIGTNNFYNYTIQKTHGDPSAKRYIKTFQVDRNSILI 380 Query: 182 ---NLIEIRVVARSFLHTQIRSFVGSL-KLVGDGKWTSTDLEKALQA-QDRKECGPLAPP 236 + ++V +SF+ QIR V LV G D + +++ K P AP Sbjct: 381 NGTEWLSLKVHGQSFMMHQIRKMVAMATMLVRAG----GDPARIVESYGPTKIAVPKAPG 436 Query: 237 EGLYFDS 243 GL + Sbjct: 437 LGLLLER 443 >gi|150865014|ref|XP_001384060.2| hypothetical protein PICST_58964 [Scheffersomyces stipitis CBS 6054] gi|149386270|gb|ABN66031.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 476 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 15/128 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---------VTGEIVVVHGAGR 50 + ++I Y G+GY G Q Q +I+ + +A + + A R Sbjct: 80 RKVAVMIGYCGTGYNGMQLQNDPKIPTIERDLYEAFAAAGAVSPENAMDIKKSGFMRAAR 139 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V L + +N L D I I + V K F R R Sbjct: 140 TDKGVHAAGNVISLKL--IIEDPEILAKINEKL--PDQIRIWGIQRVTKSFDCRKMCSSR 195 Query: 111 SYLYRIIT 118 Y Y + T Sbjct: 196 VYEYLLPT 203 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 11/128 (8%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI-------RTIDHFDVNS 179 + RA+ + E R A + G H+F F +I P T+ + Sbjct: 298 RRRAYTVSTER-LELFRQAMKQYEGTHNFHNF-TIGKAFKDPSSKRFMKETTVSDPFIIE 355 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I++ +SF+ QIR + LV + + + K P AP GL Sbjct: 356 GTEWVSIKIHGQSFMLHQIRKMIAMAVLVIRTGCPISRIHDCFSST--KINIPKAPALGL 413 Query: 240 YFDSVEYS 247 ++ Y Sbjct: 414 LLENPVYE 421 >gi|320588025|gb|EFX00500.1| tRNA pseudouridine synthase [Grosmannia clavigera kw1407] Length = 899 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 85/259 (32%), Gaps = 52/259 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTD 52 + ++I Y G+GY G Q + +I+G + A + + RTD Sbjct: 417 RKVAVMIGYAGTGYRGMQINHDEKTIEGDLFAAFVAAGAIAKTNADDPKKSSLVRCARTD 476 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +NA+L I + + F + R Y Sbjct: 477 KGVHAAGNVISLKL--IVEDADVVERINAHL--PPQIRVWGIQRTINSFSCYQACDSRWY 532 Query: 113 LYRIITR----QAPLALEKGRAWLIPKSLDCENMRIAAQHLVG------RH---DFTTF- 158 Y + + P + + D AA+ VG H D F Sbjct: 533 EYLLPSYALLPPHPDSFLGREMVASARRAD------AAEGAVGGMYDDMVHRLEDVRDFW 586 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + +PI +V L+ ++ A F R+ G + D+ Sbjct: 587 SDVERDVVTPILDGLDAEVRR---LVVEQLHATDF-----RTL---------GHRSLDDI 629 Query: 219 EKALQ--AQDRKECGPLAP 235 EK ++ A+ E AP Sbjct: 630 EKTVEEAAKPAAELTATAP 648 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 10/113 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVAR 191 ++ A G +F + + +S R I F VN + +RV + Sbjct: 681 LARLQEALSMYEGTSNFHNYTVQKSFKDASAKRHIKSFVVNPEPIQMRDTQWLSLRVHGQ 740 Query: 192 SFLHTQIRSFVGSLKLVGD-GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR V ++ G ++ L R+ P AP GL + Sbjct: 741 SFMMHQIRKMVAMAVMLTRCGTAPGPAMK--LSYGPRRISIPRAPGFGLLLER 791 >gi|297745794|emb|CBI15850.3| unnamed protein product [Vitis vinifera] Length = 495 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 20/174 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + M + Y G+ Y G Q Q++ S+I+G +E A+F G + + R Sbjct: 64 KVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDRSSR 123 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + + P + A + + I + ++ + F AR Sbjct: 124 TDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFDARR 183 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 R Y Y + A + K + G H F + Sbjct: 184 ECDLRRYSYLL---PAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYT 234 >gi|225434389|ref|XP_002276856.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 564 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 20/174 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + M + Y G+ Y G Q Q++ S+I+G +E A+F G + + R Sbjct: 64 KVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDRSSR 123 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + + P + A + + I + ++ + F AR Sbjct: 124 TDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFDARR 183 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 R Y Y + A + K + G H F + Sbjct: 184 ECDLRRYSYLL---PAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYT 234 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 165 ASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 ++S R I + + +E+ + SF+ QIR VG+ V + D+ Sbjct: 341 SASHFRKIFNCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAV-KRELLPRDIL 399 Query: 220 KALQAQDRKECGPLAPPEGLYF 241 + + PLAP E L Sbjct: 400 TLSLTKFSRIVLPLAPSEVLIL 421 >gi|147800604|emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera] Length = 602 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 20/174 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + M + Y G+ Y G Q Q++ S+I+G +E A+F G + + R Sbjct: 64 KVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDRSSR 123 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + + P + A + + I + ++ + F AR Sbjct: 124 TDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFDARR 183 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 R Y Y + A + K + G H F + Sbjct: 184 ECDLRRYSYLL---PAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYT 234 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 165 ASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 ++S R I + + +E+ + SF+ QIR VG+ V + D+ Sbjct: 341 SASHFRKIFNCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAV-KRELLPRDIL 399 Query: 220 KALQAQDRKECGPLAPPEGLYF 241 + + PLAP E L Sbjct: 400 TLSLTKFSRIVLPLAPSEVLIL 421 >gi|325088485|gb|EGC41795.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H88] Length = 612 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 24/181 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDS 53 + +++ Y+GSGY G Q + +I+G + A I + + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDK 181 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E + + +N +L S I + + I +K F + R Y Sbjct: 182 GVHAAGNVVSLKLIVEDP--NVVQKINGHL--SPQIRVWGIEITNKSFSSYHLCDSRIYE 237 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I + +P + + +D ++ + + +D Sbjct: 238 YLIPSH-----------CFLPPHPSTHLGQQLVEIAEQENDLEGYQQRQAEVAHYWEEVD 286 Query: 174 H 174 Sbjct: 287 E 287 Score = 60.2 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 L+ +A+ IP+ + + A VG +F + + +S R I F ++ Sbjct: 378 LDAKKAYRIPRER-MDRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLI 436 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V L+ + + D+K P AP Sbjct: 437 INGTEWLSLKVHGQSFMMHQIRKMVAMAALIVRCGCDIKLVPE--TYGDQKIAIPKAPGL 494 Query: 238 GLYFDS 243 GL + Sbjct: 495 GLLLER 500 >gi|225559412|gb|EEH07695.1| tRNA pseudouridine synthase [Ajellomyces capsulatus G186AR] Length = 612 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 24/181 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDS 53 + +++ Y+GSGY G Q + +I+G + A I + + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDK 181 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E + + +N +L S I + + I +K F + R Y Sbjct: 182 GVHAAGNVVSLKLIVEDP--NVVQKINGHL--SPQIRVWGIEITNKSFSSYHLCDSRIYE 237 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I + +P + + +D ++ + + +D Sbjct: 238 YLIPSH-----------CFLPPHPSTHLGQQLVEIAEQENDLEGYQQRQAEVAHYWEEVD 286 Query: 174 H 174 Sbjct: 287 E 287 Score = 58.7 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 L +A+ IP+ + + A VG +F + + +S R I F ++ Sbjct: 378 LGAKKAYRIPRER-MDRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLI 436 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V L+ + + D+K P AP Sbjct: 437 INGTEWLSLKVHGQSFMMHQIRKMVAMAALIVRCGCDIKLVPE--TYGDQKIAIPKAPGL 494 Query: 238 GLYFDS 243 GL + Sbjct: 495 GLLLER 500 >gi|213584576|ref|ZP_03366402.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 57 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 29/47 (61%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAG 49 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AG Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAG 57 >gi|118349886|ref|XP_001008224.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila] gi|89289991|gb|EAR87979.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila SB210] Length = 484 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 26/196 (13%) Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + + ALN+ L I +++ V ++F R R Y Y + PL + + Sbjct: 230 KHIDIDKIINALNSNL--PADIRCVSIKQVSRKFDIRTHCKYRVYEYLM-----PLFMYQ 282 Query: 128 GRAWLIPKSLDCE-----NMRI---AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +I + E M+ A G H++ + +A P D+ + Sbjct: 283 KYDDIIAGTPMTEEFEQKTMQRVSTLADKFKGTHNYHNYTR-QMKAKDPRCMRYILDMKT 341 Query: 180 F--------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I +V +SF++ QIR +G + ++ + ++ + + Sbjct: 342 ELITNPQNGMKFIRFTLVGQSFVYHQIRKMMGMICMMIQEDYPDNFMDSSFFHNVMRIW- 400 Query: 232 PLAPPEGLYFDSVEYS 247 LAP GL+ + + + Sbjct: 401 -LAPAHGLFLNRMRFD 415 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAI--FLVTGEI-------VVVHGAGRT 51 + + YNG GY G Q QK+ + +I+ S+ + + + E RT Sbjct: 12 KVAIFFGYNGKGYHGSQSQKDQNIKTIEKSLFEGLIDSKLISETHMGELKKAGWGRGART 71 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTI 89 D GVHAL + L ++ L K + I Sbjct: 72 DKGVHALCNGVNVKLAISEEYLMRGSPLRMDDKNPEEI 109 >gi|240282351|gb|EER45854.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H143] Length = 612 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 24/181 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDS 53 + +++ Y+GSGY G Q + +I+G + A I + + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDK 181 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L+ E + + +N +L S I + + I +K F + R Y Sbjct: 182 GVHAAGNVVSLKLIVEDP--NVVQKINGHL--SPQIRVWGIEITNKSFSSYHLCDSRIYE 237 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I + +P + + +D ++ + + +D Sbjct: 238 YLIPSH-----------CFLPPHPSTHLGQQLVEIAEQENDLEGYQQRQVEVAHYWEEVD 286 Query: 174 H 174 Sbjct: 287 E 287 Score = 60.2 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 L+ +A+ IP+ + + A VG +F + + +S R I F ++ Sbjct: 378 LDAKKAYRIPRER-MDRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLI 436 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V L+ + + D+K P AP Sbjct: 437 INGTEWLSLKVHGQSFMMHQIRKMVAMAALIVRCGCDIKLVPE--TYGDQKIAIPKAPGL 494 Query: 238 GLYFDS 243 GL + Sbjct: 495 GLLLER 500 >gi|218192790|gb|EEC75217.1| hypothetical protein OsI_11484 [Oryza sativa Indica Group] Length = 722 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 17/132 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + V + R Sbjct: 73 RVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSSR 132 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + E P + + + D + + ++ + F R Sbjct: 133 TDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRR 192 Query: 106 SAIRRSYLYRII 117 + R YLY + Sbjct: 193 ECLYREYLYLLP 204 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 18/115 (15%) Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 RA + + + + + A H D TF Q SS I +E+ + Sbjct: 528 RARWLHEPDENDRLN--ASHF---RDILTFSCGELQISSGI------------QFVELTI 570 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR VG+ V G + +L R P+AP E L Sbjct: 571 SGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSR-IVLPIAPSEVLVLRD 624 >gi|125586190|gb|EAZ26854.1| hypothetical protein OsJ_10771 [Oryza sativa Japonica Group] Length = 516 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 17/132 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + V + R Sbjct: 73 RVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSSR 132 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + E P + + + D + + ++ + F R Sbjct: 133 TDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRR 192 Query: 106 SAIRRSYLYRII 117 + R YLY + Sbjct: 193 ECLYREYLYLLP 204 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 18/115 (15%) Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 RA + + + + + A H D TF Q SS I +E+ + Sbjct: 322 RARWLHEPDENDRLN--ASHF---RDILTFSCGELQISSGI------------QFVELTI 364 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR VG+ V G + +L R P+AP E L Sbjct: 365 SGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSR-IVLPIAPSEVLVLRD 418 >gi|115452911|ref|NP_001050056.1| Os03g0338600 [Oryza sativa Japonica Group] gi|108708043|gb|ABF95838.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa Japonica Group] gi|113548527|dbj|BAF11970.1| Os03g0338600 [Oryza sativa Japonica Group] Length = 516 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 17/132 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + V + R Sbjct: 73 RVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSSR 132 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + E P + + + D + + ++ + F R Sbjct: 133 TDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRR 192 Query: 106 SAIRRSYLYRII 117 + R YLY + Sbjct: 193 ECLYREYLYLLP 204 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 18/115 (15%) Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 RA + + + + + A H D TF Q SS I +E+ + Sbjct: 322 RARWLHEPDENDRLN--ASHF---RDILTFSCGELQISSGI------------QFVELTI 364 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR VG+ V G + +L R P+AP E L Sbjct: 365 SGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSR-IVLPIAPSEVLVLRD 418 >gi|317498141|ref|ZP_07956443.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316894618|gb|EFV16798.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 50 Score = 79.5 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R G+L VG GK D+ KAL++ R + G APP+GL+ SVEY Sbjct: 1 MVRILTGTLVEVGYGKIKPEDITKALESTKRSDAGITAPPQGLFLVSVEY 50 >gi|15227735|ref|NP_180591.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|3914486|sp|O22928|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|2347206|gb|AAC16945.1| putative pseudouridine synthase [Arabidopsis thaliana] gi|330253276|gb|AEC08370.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana] Length = 510 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 27/190 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + + I Y G+ Y G Q Q++ +I+G +E AI+ G + + R Sbjct: 64 KVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSSR 123 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + P A + + I + ++ +++F R Sbjct: 124 TDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPRR 183 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD--CENMRIAAQHLVGR---HDFTTFRS 160 R Y Y + P+ + + +D + + G H++T Sbjct: 184 ECTLRKYSYLL-----PVDVLGIKNSFTSDEIDYHITDFNEILKEFEGEYPFHNYTQRSR 238 Query: 161 IHCQASSPIR 170 ++ I+ Sbjct: 239 YRRKSEQKIK 248 Score = 41.4 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +EI + SF+ QIR +G+ V + D+ + + + PLAP E L Sbjct: 342 GFVEISIWGESFMLHQIRKMIGTAVAV-KRELLPRDIIRLSLNKFTRIVLPLAPSEVLIL 400 >gi|149236317|ref|XP_001524036.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL YB-4239] gi|146452412|gb|EDK46668.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL YB-4239] Length = 445 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 15/122 (12%) Query: 8 IEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVH 56 + Y G+GY G Q Q N +I+ + A+ + RTD GVH Sbjct: 2 LGYCGTGYNGLQIQNDPNVKTIERDLYTALHKAGAISLENSLDLKKSGFQRCARTDKGVH 61 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V + + + +N +L I I + K F R R Y Y + Sbjct: 62 AAGNVVSLKM--IIEDPEIKEKINEHL--PQQIRIWGIQRTTKGFDCRKMCSSRVYEYLL 117 Query: 117 IT 118 T Sbjct: 118 PT 119 Score = 58.3 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 15/130 (11%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG---- 181 R++ I + R A Q G H+F F ++ R I V+ Sbjct: 223 ARRSYRIS-PTKLAHFRQAMQQYEGTHNFHNFTVGKTYKSPDSSRYIISAKVSEPFVIDD 281 Query: 182 --------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + +++ +SF+ QIR + L K + L + K P Sbjct: 282 SENSSHATEWVSVKIHGQSFMLHQIRKMICMAALTVRCKLPAEKLLAMCF-KPEKLNIPK 340 Query: 234 APPEGLYFDS 243 AP GL ++ Sbjct: 341 APALGLLLEN 350 >gi|302141694|emb|CBI18897.3| unnamed protein product [Vitis vinifera] Length = 419 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 18 WQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 Q+ +I+G +E+A+F + + RTD GV A+ QV Sbjct: 1 MQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRF-- 58 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 P L + LN+ L I I V F+A+ RR Y+Y I Sbjct: 59 YIDPPGLVERLNSNL--PPQIRIFGFKRVTASFNAKKFCDRRRYVYLIP 105 Score = 69.5 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 7/114 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFD----VNSFG-NLIEIRVVARSF 193 E H VG H+F F I + S R I FD V G ++ VV +SF Sbjct: 227 ERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSF 286 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + QIR +G + + LE AL +D P AP GLY D +S Sbjct: 287 MLHQIRKMIGLAVAIMRNVAPESLLETALL-KDVNINVPTAPEVGLYLDECFFS 339 >gi|68072745|ref|XP_678286.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56498704|emb|CAH97255.1| conserved hypothetical protein [Plasmodium berghei] Length = 438 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 65/198 (32%) Query: 2 IRYCMIIEYNGSGYFGWQ------------------------RQKNG------------- 24 ++I+Y+G+ Y GW N Sbjct: 87 TNIILVIDYDGTNYKGWTGIENYSSVYLNAIHGFKNVKKSDIYNGNVLEKVDDNDINCNN 146 Query: 25 -----SSIQGSIEKAIFLVTG---------------EIVVVHGAGRTDSGVHALRQVAHF 64 ++Q I + + G + G RTD GVHA V + Sbjct: 147 LKKKYETVQNCILNCLLKIHGYGDNPNITNYKENNLKPFEFIGVSRTDKGVHAKEYVCQY 206 Query: 65 DLVREWVP-----VILCKALNAYLKISDTISILNLSIVD-KQFHARFSAIRRSYLYRIIT 118 +++ P + +LN L I +L + F+ R + + Y Y I Sbjct: 207 ISYKKFPPFNGNLEKIKLSLNRLLN--KDIKVLGIFNAPFNNFNVRHHNLGKIYTYNIDF 264 Query: 119 RQAPLALEKGRAWLIPKS 136 R+ LE+ +W + Sbjct: 265 RKPSQPLERNFSWQLYDD 282 >gi|169783932|ref|XP_001826428.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40] gi|83775172|dbj|BAE65295.1| unnamed protein product [Aspergillus oryzae] Length = 563 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 17/137 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A + + RTD Sbjct: 80 KVAVLLGYSGTGYKGMQLSATEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTDK 139 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +NA+L S I + + + K F + R Y Sbjct: 140 GVHAAGNVVSLKL--IVEDEDIVQKINAHL--SPQIRVWGILVASKSFSSYQMCDSRIYE 195 Query: 114 Y----RIITRQAPLALE 126 Y P Sbjct: 196 YLMPSYCFLPPHPSTFL 212 Score = 52.9 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 12/125 (9%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG---- 181 R++ IP ++ A +G +F + + S R I F V+ Sbjct: 323 AKRSYRIP-PARVARLQEALDKYLGTKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIIN 381 Query: 182 --NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPEG 238 + ++V +SF+ QIR V L+ ++ + + + P AP G Sbjct: 382 GTEWLSLKVHGQSFMMHQIRKMVAMATLIVRCGCDP---KRIVDSYGPTKIPIPKAPGLG 438 Query: 239 LYFDS 243 L + Sbjct: 439 LLLER 443 >gi|238493757|ref|XP_002378115.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357] gi|317157361|ref|XP_003190833.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40] gi|220696609|gb|EED52951.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357] Length = 601 Score = 79.1 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 17/137 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q +I+G + A + + RTD Sbjct: 118 KVAVLLGYSGTGYKGMQLSATEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTDK 177 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA V L + + +NA+L S I + + + K F + R Y Sbjct: 178 GVHAAGNVVSLKL--IVEDEDIVQKINAHL--SPQIRVWGILVASKSFSSYQMCDSRIYE 233 Query: 114 Y----RIITRQAPLALE 126 Y P Sbjct: 234 YLMPSYCFLPPHPSTFL 250 Score = 52.9 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 12/125 (9%) Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG---- 181 R++ IP ++ A +G +F + + S R I F V+ Sbjct: 361 AKRSYRIP-PARVARLQEALDKYLGTKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIIN 419 Query: 182 --NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPEG 238 + ++V +SF+ QIR V L+ ++ + + + P AP G Sbjct: 420 GTEWLSLKVHGQSFMMHQIRKMVAMATLIVRCGCDP---KRIVDSYGPTKIPIPKAPGLG 476 Query: 239 LYFDS 243 L + Sbjct: 477 LLLER 481 >gi|255540533|ref|XP_002511331.1| pseudouridylate synthase, putative [Ricinus communis] gi|223550446|gb|EEF51933.1| pseudouridylate synthase, putative [Ricinus communis] Length = 178 Score = 78.7 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 10/102 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA------GRTDSGV 55 + + Y G GY G Q+ +I+G +E+A+F G RTD GV Sbjct: 31 RKIAIFFAYCGVGYQGMQKNPGTKTIEGELEEALFHFDAVPEQDRGCPKRYDWARTDKGV 90 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 A+ QV P L LN+ L I I V Sbjct: 91 SAVGQVISGRF--HIDPPGLVGRLNSIL--PSHIRIFGYKRV 128 >gi|71418252|ref|XP_810793.1| pseudouridylate synthase I [Trypanosoma cruzi strain CL Brener] gi|70875381|gb|EAN88942.1| pseudouridylate synthase I, putative [Trypanosoma cruzi] Length = 655 Score = 78.7 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 27/204 (13%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y G+GY G Q Q + + ++G + +A+ V G++ + RT Sbjct: 26 LCVMYCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIERGRVKGDVHHFSRSCRT 85 Query: 52 DSGVHALRQVAHFDLVREWV-----PVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + E + + + LN L TI + ++ + F RFS Sbjct: 86 DRGVHAVRNLVCLFVFTERIEALGGCEKIKEMLNTTL--PLTIRVARVTPLMGNFIPRFS 143 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 RR Y Y I + +++ E +R +F + S Sbjct: 144 CNRRVYHYLIPAYAFVAPCDYWKSFYEKFPQAAELLRRCYAE------ARSFLDLSPAES 197 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVA 190 P+ V +L+ VV Sbjct: 198 DPLLAALLAAVTRANDLLLRYVVG 221 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR VG+L V G + E + DR+ PLAP LY Sbjct: 326 FLVFQIEGNSFLFNMIRKIVGTLIAVLRGARETLFAEAV--SPDRRVVCPLAPGPYLYL 382 >gi|257126166|ref|YP_003164280.1| Pseudouridylate synthase-like protein [Leptotrichia buccalis C-1013-b] gi|257050105|gb|ACV39289.1| Pseudouridylate synthase-like protein [Leptotrichia buccalis C-1013-b] Length = 340 Score = 78.7 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 81/252 (32%), Gaps = 40/252 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALRQVA 62 Y +EY+G + + N S++ K + +I + AGRTD+ V A + Sbjct: 26 YMFFVEYDGQKFESFDENPNKKSVKSEFRKILENNKIKIFKGIQQAGRTDANVSAKENIL 85 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + L LKI+ + L F I + Y Sbjct: 86 YINSKGIIDFSKLKFLETEGLKINKIVRTL-------PFLEFPQMIEKRY---------- 128 Query: 123 LALEKGRAWLIPKSL---DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + PK L D E + + + G+ +F F S + R V Sbjct: 129 ------YIYEYPKKLRKNDEERINQICKKVSGKKNFYEFTSEKGKKLKNHRR--EIFVKY 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLK---LVGDGKWTSTDLE-KALQAQDRKECGPLAP 235 + + V FL Q+R + K T + E + L +D+ G Sbjct: 181 ENDKLYF--VGDGFLPQQVRIMSNFILNNTKFDIEKLTDENFENRKLGIKDKPLDGKY-- 236 Query: 236 PEGLYFDSVEYS 247 L V++S Sbjct: 237 ---LTLMKVDFS 245 >gi|238883128|gb|EEQ46766.1| tRNA pseudouridine synthase 1 [Candida albicans WO-1] Length = 461 Score = 78.7 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 15/122 (12%) Query: 8 IEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGVH 56 + Y G+GY G Q Q N +I+ I A+ V + A RTD GVH Sbjct: 2 LGYCGTGYNGMQVQNDPNVKTIEKDIYDAMATAGAISAENAVDLKKSGFQRAARTDKGVH 61 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V + + +N L I I + K F R R Y Y + Sbjct: 62 AAGNVISLKM--IIEDPEIINKINDLL--PKQIRIWGIQRTTKGFDCRKCCSSRIYEYLL 117 Query: 117 IT 118 T Sbjct: 118 PT 119 Score = 52.9 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 8/107 (7%) Query: 143 RIAAQHLVGRHDFTTFRSIHC-QASSPIR-----TIDHFDVNSFGNLIEIRVVARSFLHT 196 R + G H+F F + +S R + V I I++ +SF+ Sbjct: 238 REVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSFMLH 297 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 QIR + LV + Q+ K P AP GL ++ Sbjct: 298 QIRKMIAMAALVVRLSLPCGIINNFFQST--KINIPKAPALGLLLEN 342 >gi|19113277|ref|NP_596485.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces pombe 972h-] gi|74676179|sp|O94295|PUS2_SCHPO RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA pseudouridylate synthase 2; AltName: Full=tRNA-uridine isomerase 2 gi|3850107|emb|CAA21896.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces pombe] Length = 451 Score = 78.3 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 17/155 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--------VTGEIVVVHGAGRTDS 53 +R +++ Y+G GY G Q +I+G + + + E + + A RTD Sbjct: 39 VRIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDK 98 Query: 54 GVHALRQVAHFDL--VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 GVH LR + +L + +L LN L I + ++ K F+ R S R+ Sbjct: 99 GVHTLRNLISLNLFVDKPLDISLLKTELNEALCS--QIRVWSVFPAPKYFNPRISCESRT 156 Query: 112 YLYRIIT----RQAPL-ALEKGRAWLIPKSLDCEN 141 Y Y I + P L K + + LD E Sbjct: 157 YEYLIPSFALLPPKPSCPLFKKMQKNLSRKLDNEL 191 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFD-----VNSFGNLIEIRVVARS 192 + ++ + GRH+F F + S R I+ V I + + S Sbjct: 274 LKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVTCGTPFVYENWEWIPVTIKGNS 333 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR + + ++ + ++KA + +P L +++S Sbjct: 334 FMLNQIRKMMAHVLMIIRSCAPTGLIDKAFD-PNITMNISKSPGHVLLLKDIKFS 387 >gi|328850113|gb|EGF99282.1| hypothetical protein MELLADRAFT_45767 [Melampsora larici-populina 98AG31] Length = 615 Score = 77.9 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 51/156 (32%), Gaps = 35/156 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTD 52 + +++ Y G GY G Q +I+G + KA V + A RTD Sbjct: 128 RKVAVLLGYYGKGYQGSQVNPGMKTIEGEVFKAFVKAGCVSEDNSAHPNKVGLQRAARTD 187 Query: 53 SGVHALRQVAHFD--------------------LVREWVPVI----LCKALNAYLKISDT 88 + VHA + P L K +N++L + Sbjct: 188 ANVHAGCNLICLKLILDPPSLKESSDITAESSETKTCGDPEHHSLPLMKHINSFL--PEE 245 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 I + L V FHAR R+Y Y + T Sbjct: 246 IRLWGLERVQNSFHARTLCDSRTYEYSLPTYLFLPP 281 Score = 62.2 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 16/138 (11%) Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDV---- 177 + K ++ I + + ++ + Q G H+F F + S IR I V Sbjct: 342 SVIHKKSSYRISLPM-LQRLKQSVQKFKGTHNFHNFTVGKEFKDRSAIRIIREMTVSDPF 400 Query: 178 ----NSFGN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 S G+ I ++ +SF+ QIR +G + L+ + T + + L R Sbjct: 401 VVGGESEGDPATEWISVKFYGQSFMLHQIRKMIGLIILLCRTRTPCTLIPE-LYGPVRVR 459 Query: 230 CGPLAPPEGLYFDSVEYS 247 P AP GL + Sbjct: 460 I-PKAPGLGLILHHPHFD 476 >gi|209876690|ref|XP_002139787.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris RN66] gi|209555393|gb|EEA05438.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris RN66] Length = 497 Score = 77.9 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 75/274 (27%), Gaps = 54/274 (19%) Query: 26 SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL--CKALNAYL 83 +IQ + K + L+ + + + R A + +L K + L Sbjct: 173 TIQNYLVKKLNLILPQTIRIFTLIRVSKNFDARKDCFRRQYEYIMPEYVLYPVKFIKQDL 232 Query: 84 KIS-DTISILNLSIVDKQFHARFSAIRRS------YLY--------------------RI 116 I+ + +++ R Y Y RI Sbjct: 233 YEKLQGIAQSRIIENKNNLKSKYRNKRNRDDLINDYNYCEDEDIDENNNENDQDLKELRI 292 Query: 117 ITRQAPLALEKGRAWLIPKSLDCE-----------------NMRIAAQHLVGRHDFTTFR 159 L L E G H+F F Sbjct: 293 KRYNQHELLRSNNYNLDHYPYIEEICFNRIEEYELNELELERFSKILNQYTGTHNFHNFT 352 Query: 160 SI-HCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S +S R ID +VN L++I + +SFL QIR + + G Sbjct: 353 SRLEYNNASAWRHIDKINVNRLPVKNKLKLLKITIKGQSFLLHQIRKIIALAIEIYRGSA 412 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + RK LAP +GL D V Y Sbjct: 413 PLSSINLCF--GSRKYSIHLAPSQGLLLDRVYYD 444 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 28/105 (26%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS------SIQGSIEKAI--------FLVTGEIVVV---- 45 YCM I YNG+ Y+G Q Q N + +I+ +E+A+ E V + Sbjct: 10 YCMAIGYNGTNYYGMQIQSNTNNCKYIETIESKLEEALIKSSMLVIRKSKNEYVNLKEFN 69 Query: 46 ----------HGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN 80 GRTD GVH++ Q+ F + L + LN Sbjct: 70 SSSFLTSINWTRVGRTDKGVHSVCQIVSFRGSLKVSDNDLQEELN 114 >gi|297826435|ref|XP_002881100.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326939|gb|EFH57359.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 507 Score = 77.9 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 25/189 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + + I Y G+ Y G Q Q++ +I+G +E AI+ G + + R Sbjct: 64 KVVIRIGYVGTDYRGLQIQRDDPSLKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSSR 123 Query: 51 TDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GVH+L + + P A + + I + ++ +++F R Sbjct: 124 TDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPRR 183 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPK-SLDCENMRIAAQHLVGR---HDFTTFRSI 161 R Y Y + + ++ + + G H++T Sbjct: 184 ECTLRKYSYLLPV----DVIGIKNSFTSDEIDYHITDFNKILNEFEGEYPFHNYTQRSRY 239 Query: 162 HCQASSPIR 170 ++ I+ Sbjct: 240 RRKSEQKIK 248 Score = 42.5 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 11/94 (11%) Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 L G H FR + + + +EI + SF+ QIR +G+ Sbjct: 316 KLSGAHFRKVFRCRSGKLENSL----------GFGFVEISIWGESFMLHQIRKMIGTAVA 365 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 V + D+ + + + PLAP E L Sbjct: 366 V-KRELLPRDIIRLSLNKFTRIVLPLAPSEVLIL 398 >gi|307102143|gb|EFN50538.1| hypothetical protein CHLNCDRAFT_138514 [Chlorella variabilis] Length = 346 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 87/258 (33%), Gaps = 61/258 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 + + + Y+G+G G Q Q++ +I+ +E+AIF G + + R + G Sbjct: 42 RKVALFVGYSGTGRRGLQMQRSSAPEETIEDVLEEAIFQAGG----ILPSNRGNLG---- 93 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + + ++ V K ++AR IRRSY Y + Sbjct: 94 -----------------------------KVRVFSVQRVSKSWNARRECIRRSYSYFVPA 124 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI--RTIDHFD 176 LAL+ G+ ++ A+ G+ + PI R + Sbjct: 125 SVLGLALDGGKEDQRR----LHLLQHASSK-KGQ--VQVAWKFERDDADPIVRRHFRFIE 177 Query: 177 VNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 G I + + SF+ QIR VG V G LE +L Sbjct: 178 WCRAGTELEVLVPGGQPCIHLSLQGSSFMLHQIRKMVGMAVAVARGNLPLELLEFSLATP 237 Query: 226 DRKECGPLAPPEGLYFDS 243 R PLAPP L Sbjct: 238 ARINL-PLAPPSTLMLTG 254 >gi|221508095|gb|EEE33682.1| pseudouridylate synthase, putative [Toxoplasma gondii VEG] Length = 904 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 10/119 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDVNS------FGNLIEIRV 188 E +R + G H F F S R I V+ +++ I + Sbjct: 706 VEKLRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHLDGVSDDVVVIEL 765 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +SFL QIR VG V G T T L AL+ + AP EGL S Y Sbjct: 766 EGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYD 824 Score = 40.2 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 SSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAHFDL 66 +++G +E+A+ G + + A RTD GVHA V L Sbjct: 281 RTVEGVLEEALLASGGIAPYCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 32 EKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 E ++ T + +G D +R+ + + + V LNA L I Sbjct: 409 EASVSAATSNATDLEKSGSRDK----MREKSERLVWQREREVAFLARLNAAL--PPDIRC 462 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRII 117 + V K F AR S RR Y + + Sbjct: 463 FAVRRVTKNFDARVSCSRRRYAFLLP 488 >gi|221486308|gb|EEE24569.1| pseudouridylate synthase, putative [Toxoplasma gondii GT1] Length = 901 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 10/119 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDVNS------FGNLIEIRV 188 E +R + G H F F S R I V+ +++ I + Sbjct: 703 VEKLRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHLDGVSDDVVVIEL 762 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +SFL QIR VG V G T T L AL+ + AP EGL S Y Sbjct: 763 EGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYD 821 Score = 40.2 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 SSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAHFDL 66 +++G +E+A+ G + + A RTD GVHA V L Sbjct: 281 RTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 32 EKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 E ++ T + +G D +R+ + + + V LNA L I Sbjct: 406 EASVSAATSNATDLEKSGSRDK----MREKSERLVWQREREVAFLARLNAAL--PPDIRC 459 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRII 117 + V K F AR S RR Y + + Sbjct: 460 FAVRRVTKNFDARVSCSRRRYAFLLP 485 >gi|237833615|ref|XP_002366105.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49] gi|211963769|gb|EEA98964.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49] Length = 904 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 10/119 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDVNS------FGNLIEIRV 188 E +R + G H F F S R I V+ +++ I + Sbjct: 706 VEKLRAVFKVFEGTHAFQNFTKRGKHKDSSPAAFKRHIHRTAVSQAHLDGVSDDVVVIEL 765 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +SFL QIR VG V G T T L AL+ + AP EGL S Y Sbjct: 766 EGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSPVYD 824 Score = 40.2 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 SSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAHFDL 66 +++G +E+A+ G + + A RTD GVHA V L Sbjct: 281 RTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 32 EKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 E ++ T + +G D +R+ + + + V LNA L I Sbjct: 409 EASVSAATSNATDLEKSGSRDK----MREKSERLVWQREREVAFLARLNAAL--PPDIRC 462 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRII 117 + V K F AR S RR Y + + Sbjct: 463 FAVRRVTKNFDARVSCSRRRYAFLLP 488 >gi|70923191|ref|XP_734642.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56507573|emb|CAH84165.1| hypothetical protein PC300883.00.0 [Plasmodium chabaudi chabaudi] Length = 82 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 17/94 (18%) Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 + I+R+YLY + + K+ + M AA+ +G HDF+ F Sbjct: 2 NCIQRTYLY----------------FFVNKNYNIPRMNEAAKIFLGEHDFSNFCKKRKNT 45 Query: 166 SSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQI 198 S IRTI F++ N ++ SFL+ Q+ Sbjct: 46 ISFIRTIHKFEIKRIDQNFYYFKIKGTSFLYNQV 79 >gi|67608685|ref|XP_666896.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54657966|gb|EAL36665.1| hypothetical protein Chro.80065 [Cryptosporidium hominis] Length = 501 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 12/143 (8%) Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTI 172 YR++ + L+ R + + D + + +G H F F S + S+ R I Sbjct: 306 YRLVNYKIEDYLDPKRRFSLSDE-DLKRFQSILNEYIGTHSFHNFTSKSSYEDSTSWRHI 364 Query: 173 DHFDVNSFG--------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + V NLI+I + +SFL QIR V + G S ++ Sbjct: 365 EEIKVVKVNQNEIKGDINLIKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFLP 424 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 K LAP +GL D V Y+ Sbjct: 425 D--KFSIHLAPSQGLLLDRVFYN 445 Score = 64.8 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 22/86 (25%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV--------------- 38 M YCM Y+GS Y G Q Q + +I+G +E + + Sbjct: 7 MRTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFVSNEQNDDQGG 66 Query: 39 TGEIVVVHGAGRTDSGVHALRQVAHF 64 + + GRTD GVH++ QV F Sbjct: 67 LLKKIKWSRVGRTDKGVHSVCQVVSF 92 >gi|269121656|ref|YP_003309833.1| Pseudouridylate synthase-like protein [Sebaldella termitidis ATCC 33386] gi|268615534|gb|ACZ09902.1| Pseudouridylate synthase-like protein [Sebaldella termitidis ATCC 33386] Length = 276 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 31/214 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALRQVA 62 Y I Y+G+ + + K+ +S++G +K + + AGRTD V A + Sbjct: 14 YLFFIRYDGTKFDSFDENKDKTSVKGEFKKLLDENNISYYKGIQQAGRTDKDVSAEENIL 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + +E N+ + + I ++ +R Y+YR + Sbjct: 74 YINTKQELKLENFR---NSSVIL----EIFDIKKTLPYLELPKLIEKRHYIYRYPKDRIK 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFG 181 + E + + L G+HD + F + IR + + N Sbjct: 127 SS--------------IEEIDKKCRELSGKHDVSAFTTKKGRELKEKIRELAVYYENQ-- 170 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 E+ SF+ Q+R G + GK Sbjct: 171 ---ELHFTGSSFMPQQVRIMSGYIL---TGKKQP 198 >gi|255727174|ref|XP_002548513.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404] gi|240134437|gb|EER33992.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404] Length = 427 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 15/122 (12%) Query: 8 IEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVH 56 + Y G+GY G Q Q N +I+ + +A+ + A RTD GVH Sbjct: 2 LGYCGTGYNGMQVQNDPNVKTIEKDVYEAMVKAGAISKENSTDLKKSQFQRAARTDKGVH 61 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V + + +N L + I + + K F R R Y Y + Sbjct: 62 AAGNVISLKM--IIEDPEILNKINDNL--PEQIRLWGIQRTTKGFDCRKCCSSRIYEYLL 117 Query: 117 IT 118 T Sbjct: 118 PT 119 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 128 GRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFD-----VNSF 180 R + + LD R + G H+F F + +S R + V Sbjct: 215 RREYRVSKHKLDH--FRDVMKQYEGTHNFHNFTIGKPFKDTSASRYMISTKMSDPFVIEG 272 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I++ +SF+ QIR + +V S + ++ K P AP GL Sbjct: 273 TEWVSIKIHGQSFMLHQIRKMIAMATMVVRLSLPSKIINNFF--KEDKINIPKAPALGLL 330 Query: 241 FDSVEYS 247 ++ Y Sbjct: 331 LENPVYD 337 >gi|330835922|ref|XP_003292011.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum] gi|325077781|gb|EGC31472.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum] Length = 539 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 105/301 (34%), Gaps = 74/301 (24%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEI----------VVVHGAGRT 51 + + Y+G+G++G K+ +I+ +IEKA+F + G I + + RT Sbjct: 129 FALCFGYDGTGFYGLSYNKDLKYKAIENAIEKALF-INGHIAPSNVGDLSRIKWSRSSRT 187 Query: 52 DSGVHALRQVAHFDL-------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 D GVH+L + + RE + +++N +L +++ +L+ + + K F AR Sbjct: 188 DKGVHSLSTLISCFILVDEKTNQREGLSKETIESINKHL--PESVRLLSGTRISKSFRAR 245 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG---RHDFTTFRSI 161 R+Y Y + + + + ++M + +G H++T+ R+ Sbjct: 246 RGVCERTYHYMVPKK-------------YLEGISIDHMNEILSNYIGNFSYHNYTSQRNT 292 Query: 162 HCQASS-----------------------PIRTIDHFDVNSFGNLIEIRV------VARS 192 + + I + ++ RV + Sbjct: 293 YLAEKNKKQSEDDDDEDEGEDFEEENQPKTILSPTTVTIDRISEKKMFRVNPKNMRTVKK 352 Query: 193 FLHTQIRSFVG------SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 F + + V L+ ++ + P APP LY E+ Sbjct: 353 FYVESDPILINNQEWFRFVVTVAKKIQPIEALKVSIDSP-FIVSTPTAPPFSLYLYEFEF 411 Query: 247 S 247 Sbjct: 412 E 412 >gi|159478785|ref|XP_001697481.1| predicted protein [Chlamydomonas reinhardtii] gi|158274360|gb|EDP00143.1| predicted protein [Chlamydomonas reinhardtii] Length = 446 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 82/293 (27%), Gaps = 93/293 (31%) Query: 26 SIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVHALRQVAHFDL---------- 66 +I+ +EKA+F + + A RTD GVH+L V + Sbjct: 63 TIEQVLEKALFAAGCISEANFGSFSKIRWSRASRTDKGVHSLGTVMGLRMLVDDAKYVAG 122 Query: 67 -VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + + L +A+N +L I + +K+F AR R Y Y + Sbjct: 123 PDGDCEGLALAEAVNTHL--PPQIRVF---TTNKKFSARHMCEGRVYQYYLP-------- 169 Query: 126 EKGRAWLIPKSLD--------CENMRIAAQHLVGRHDFTTFRS----------------- 160 +I D R A + G H F F Sbjct: 170 ----VSMIDLKCDGSEEDAQRLAKFRDALKCYEGSHPFHNFTKRVTYQPGGSNVQFRPGD 225 Query: 161 -----------------------IHCQASSPIRTIDHFD-------VNSFGNLIEIRVVA 190 + R I F V + + V Sbjct: 226 GVVGRYGPYGRVLLLRWQTEVDPRDRITQTFYRRIYSFTAADPKPMVEGGEPCLLLEVSG 285 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +SF+ IR +G+ V G + L +L R P APP L Sbjct: 286 QSFMLHHIRHMIGAAVAVTLGLISKEVLLGSLTPPAR-VTLPRAPPHTLLLSD 337 >gi|66356668|ref|XP_625512.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa II] gi|46226500|gb|EAK87494.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa II] Length = 501 Score = 76.4 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 12/143 (8%) Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTI 172 YR++ + L+ R + + D + + +G H F F S + S+ R I Sbjct: 306 YRLVNYKIEDYLDPKRRFSLSDE-DLKRFQSILNEYIGTHSFHNFTSKSSYEDSTSWRHI 364 Query: 173 DHFDVNSFG--------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + V NLI+I + +SFL QIR V + G S ++ Sbjct: 365 EEIKVVKVSQNEIKGEINLIKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFLP 424 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 K LAP +GL D V Y+ Sbjct: 425 D--KFSIHLAPSQGLLLDRVFYN 445 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 22/86 (25%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV--------------- 38 M YCM Y+GS Y G Q Q + +I+G +E + + Sbjct: 7 MKTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFLSNEQNDDQGG 66 Query: 39 TGEIVVVHGAGRTDSGVHALRQVAHF 64 + + GRTD GVH++ QV F Sbjct: 67 LLKKIKWSRVGRTDKGVHSVCQVVSF 92 >gi|322492588|emb|CBZ27865.1| pseudouridylate synthase-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 696 Score = 75.2 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 21/131 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + + ++G + +A+ GE + RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEIFEEVGQTEGICEKLNRQL--PATVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRII 117 RR Y Y + Sbjct: 147 CNRRVYRYMLP 157 Score = 48.7 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + ++ SFL IR +GS+ V G LE+A + +R+ PLAP LY Sbjct: 365 FLFFQIEGCSFLLNMIRKIIGSVLAVCRGAREP-ILEEAF-SPERRVTTPLAPGPYLYLA 422 Query: 243 SVEY 246 Y Sbjct: 423 QSTY 426 >gi|219116871|ref|XP_002179230.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409121|gb|EEC49053.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 63 Score = 74.9 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 6 MIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y GS + GWQRQ S+Q +E A+ G V V AGRTD+GVHAL Q+ Sbjct: 1 LDLAYFGSDFCGWQRQAQSKKPSVQKIVEDAMQDALGYAVNVRVAGRTDAGVHALGQIGR 60 Query: 64 FDL 66 Sbjct: 61 VRT 63 >gi|134080163|emb|CAK46143.1| unnamed protein product [Aspergillus niger] Length = 567 Score = 74.9 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 13/130 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q + +I+G + A + + RTD Sbjct: 120 KVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCARTDK 179 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA + L + + +N L I + ++ + +K F + R Y Sbjct: 180 GVHAAGNIVSLKL--IVEDDDIIQKINEKLSS--QIRVWDILVTNKSFSSYQLCDSRIYE 235 Query: 114 YRIITRQAPL 123 Y I P Sbjct: 236 YLITHCFLPP 245 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFG-- 181 L+ RA+ IP ++ A VG ++F + A S R I F + Sbjct: 328 LQAKRAYRIPAQR-LARVQEALDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPII 386 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V +V + + A K P AP Sbjct: 387 INGTEWLSLKVHGQSFMMHQIRKMVAMAAMVVRCGCDPQRIVETYGAN--KIAIPKAPGL 444 Query: 238 GLYFDS 243 GL + Sbjct: 445 GLLLER 450 >gi|282934570|ref|ZP_06339821.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] gi|281301364|gb|EFA93657.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] Length = 38 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV 38 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKM 38 >gi|71423309|ref|XP_812417.1| pseudouridylate synthase I [Trypanosoma cruzi strain CL Brener] gi|70877194|gb|EAN90566.1| pseudouridylate synthase I, putative [Trypanosoma cruzi] Length = 655 Score = 74.5 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 21/161 (13%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y G+GY G Q Q + + ++G + +A+ V G++ + RT Sbjct: 26 LCVMYCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIERGRVKGDMHHFARSCRT 85 Query: 52 DSGVHALRQVAHFDLVREWV-----PVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D VHA+R + + E + + + LN L TI I ++ + F RFS Sbjct: 86 DRAVHAVRNLICLFVFTERIEALGGCEKIKEMLNTTL--PLTIRIARVTPLMGNFIPRFS 143 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 RR Y Y I + + + E +R Sbjct: 144 CNRRVYHYLIPAYAFVAPCDYWKGFYEKFPQAAELLRRCCA 184 Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR VG+L V G T +AL + DR+ PLAP LY Sbjct: 326 FLVFQIEGNSFLFNMIRKIVGTLIAVLRGAR-ETLFAEAL-SPDRRVVCPLAPGPYLYL 382 >gi|322499857|emb|CBZ34930.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 696 Score = 74.5 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 21/131 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + + ++G + +A+ GE + RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIAEVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFEEMGQAEGICEKLNRQL--PSTVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRII 117 RR Y Y + Sbjct: 147 CNRRVYRYMLP 157 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGPLAPPEGL 239 + ++ SFL IR +GS+ V G E L+ + +R+ PLAP L Sbjct: 365 FLFFQIEGCSFLLNMIRKIIGSVLAVCRGAR-----ESILEDAFSPERRVTTPLAPGPYL 419 Query: 240 YFDSVEY 246 Y Y Sbjct: 420 YLAQSTY 426 >gi|146089460|ref|XP_001470389.1| pseudouridylate synthase-like protein [Leishmania infantum] gi|134070422|emb|CAM68761.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5] Length = 696 Score = 74.1 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 21/131 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + + ++G + +A+ GE + RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIVADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVR-----EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFEEMGQAEGICEKLNRQL--PSTVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRII 117 RR Y Y + Sbjct: 147 CNRRVYRYMLP 157 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGPLAPPEGL 239 + ++ SFL IR +GS+ V G E L+ + +R+ PLAP L Sbjct: 365 FLFFQIEGCSFLLNMIRKIIGSVLAVCRGAR-----ESILEDAFSPERRVTTPLAPGPYL 419 Query: 240 YFDSVEY 246 Y Y Sbjct: 420 YLAQSTY 426 >gi|281206578|gb|EFA80764.1| hypothetical protein PPL_06350 [Polysphondylium pallidum PN500] Length = 624 Score = 73.3 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 32/181 (17%) Query: 5 CMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSG 54 ++ Y G+GY G + Q +G ++++ ++E+A+F + + + RTD G Sbjct: 187 ALLFAYVGTGYHGLEYQISGYNALENTLEQALFKAGLILPSNLGDLDRIRWSRSSRTDKG 246 Query: 55 VHALRQVAHFDLV----REWVPVI---LCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 VH+L + L + P L + +N L + IL L+ + F R Sbjct: 247 VHSLSTLLAGCLEIEDGSGYYPEKVAVLIEKINRGL--PPNLRILALAPTSRSFDPRRQC 304 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI-AAQHLVGRHDFTTFRSIHCQAS 166 R+Y Y + + + L E + +G + + F S Sbjct: 305 TSRTYHYVLPKK------------YLGTKLTLEQINESILPLYIGSNSYHNFTSHRRTYK 352 Query: 167 S 167 Sbjct: 353 D 353 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 15/90 (16%) Query: 166 SSPIRTIDHFDVNS--------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 S+ +R I+ F V + V SF+ QIR +G + +G+G Sbjct: 424 STNVRRINSFKVVETSFKTKNVDGGGGGDEEWVRFEVEGASFIQYQIRKMIGFVLAIGNG 483 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LE AL++ P+APP LY Sbjct: 484 YCDRRMLELALKSP-FSIRSPVAPPNPLYL 512 >gi|114550574|ref|XP_001150260.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Pan troglodytes] Length = 102 Score = 73.3 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 A + +T + + ++SFL+ Q+R L VG G ++ L++ Sbjct: 2 ADTAPQTPTGTCFSRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAHVKTILES 61 Query: 225 QDR--KECGPLAPPEGLYFDSVEY 246 QD K +AP GL+ SV Y Sbjct: 62 QDPLGKHQTRVAPAHGLFLKSVLY 85 >gi|157870999|ref|XP_001684049.1| pseudouridylate synthase-like protein [Leishmania major] gi|68127117|emb|CAJ04679.1| pseudouridylate synthase-like protein [Leishmania major strain Friedlin] Length = 696 Score = 72.9 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 21/131 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + + ++G + +A+ GE + RT Sbjct: 29 LCVLYSGSGFRGLQIQVHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFEKMGQAEGICEKLNRQL--PATVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRII 117 RR Y Y + Sbjct: 147 CNRRVYRYMLP 157 Score = 43.3 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + ++ SFL IR +GS+ V G + LE A + R PLAP LY Sbjct: 365 FLFFQIEGCSFLLNMIRKIIGSVLAVCRGAR-ESILEDAFSPECR-VTTPLAPGPYLYLA 422 Query: 243 SVEY 246 Y Sbjct: 423 QSTY 426 >gi|145348169|ref|XP_001418528.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578757|gb|ABO96821.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 422 Score = 72.6 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 70/251 (27%), Gaps = 62/251 (24%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 Y+G+ + +S+ +++ A+ V + AGRTD GV AL Sbjct: 141 DFAYDGT------FEPGCASVSAALQLALRPVLDKTRPTPSAGRTDRGVSALASCVSLWS 194 Query: 67 VRE-WVPVILCKALNAYLKISDT--ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + + + +N + + ++ FHA F+A R Y+Y + Q Sbjct: 195 KSDAISAAEIERLVNEDSAPGKAGLLRVSDVRETGSAFHATFAAKSRRYVYCLPKNQ--- 251 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGR-----HDFTTFRSIHCQASSPIRTIDHFDVN 178 A + R LD + LV D F S + T Sbjct: 252 AFRESRT--PKADLDARIIDRILAALVRECANAPIDMHAFARGTPPGKSSVVTFRVARAF 309 Query: 179 S-------------------------------------------FGNLIEIRVVARSFLH 195 +I I +VA FL Sbjct: 310 EAKLPSPPGDGADSDNDSKVTAGVRRSKSRNDAHDDTIDITDIDADEVIVIELVADRFLR 369 Query: 196 TQIRSFVGSLK 206 IR V + Sbjct: 370 KLIRCLVATTI 380 >gi|154339169|ref|XP_001562276.1| pseudouridylate synthase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 689 Score = 71.8 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 21/127 (16%) Query: 10 YNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRTDSGV 55 Y+GSG+ G Q Q + + ++G + +A+ GE + RTD GV Sbjct: 33 YSGSGFRGLQIQVHAPTCHTVEGMLIQALKDTGIIADVVRGRPAGEHHHFARSCRTDRGV 92 Query: 56 HALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HA+R + + +E + +C+ LN L T+ + ++ + F R RR Sbjct: 93 HAIRNMVSLFVPKEVFDKVGQSGGICERLNRRL--PATVRVASVMQLSGSFIPRHCCNRR 150 Query: 111 SYLYRII 117 Y Y + Sbjct: 151 VYRYMLP 157 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + ++ SFL IR +GSL V G + LE+AL + +R+ PLAP LY Sbjct: 365 FLIFQIEGESFLLNMIRKVIGSLLAVCRGAR-ESILEEAL-SPERRVTTPLAPGPYLYLA 422 Query: 243 SVEY 246 Y Sbjct: 423 QSTY 426 >gi|322505105|emb|CAM39306.2| pseudouridylate synthase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 689 Score = 71.8 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 21/127 (16%) Query: 10 YNGSGYFGWQRQKNGSS---IQGSIEKAIF-----------LVTGEIVVVHGAGRTDSGV 55 Y+GSG+ G Q Q + + ++G + +A+ GE + RTD GV Sbjct: 33 YSGSGFRGLQIQVHAPTCHTVEGMLIQALKDTGIIADVVRGRPAGEHHHFARSCRTDRGV 92 Query: 56 HALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HA+R + + +E + +C+ LN L T+ + ++ + F R RR Sbjct: 93 HAIRNMVSLFVPKEVFDKVGQSGGICERLNRRL--PATVRVASVMQLSGSFIPRHCCNRR 150 Query: 111 SYLYRII 117 Y Y + Sbjct: 151 VYRYMLP 157 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + ++ SFL IR +GSL V G + LE+AL + +R+ PLAP LY Sbjct: 365 FLIFQIEGESFLLNMIRKVIGSLLAVCRGAR-ESILEEAL-SPERRVTTPLAPGPYLYLA 422 Query: 243 SVEY 246 Y Sbjct: 423 QSTY 426 >gi|47187449|emb|CAG13480.1| unnamed protein product [Tetraodon nigroviridis] Length = 97 Score = 71.4 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 10/92 (10%) Query: 3 RYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHA 57 RY + +Y G+ Y G + Q S+Q +E A+ + V + + RTD+GVHA Sbjct: 1 RYLIFFQYIGTKYSGVVKVPPHQLFKKSVQDHLEDALRKLRPLNPVSLSVSSRTDAGVHA 60 Query: 58 LRQVAHFDLVR-----EWVPVILCKALNAYLK 84 L AHFDL R + IL ALN +L+ Sbjct: 61 LCNSAHFDLQRRNDKPPFTADILVDALNYHLR 92 >gi|269123330|ref|YP_003305907.1| Pseudouridylate synthase-like protein [Streptobacillus moniliformis DSM 12112] gi|268314656|gb|ACZ01030.1| Pseudouridylate synthase-like protein [Streptobacillus moniliformis DSM 12112] Length = 211 Score = 71.4 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 75/224 (33%), Gaps = 42/224 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSI-EKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y G + + K+ +++G + E + + AGRTD+ V A Sbjct: 8 YLLEISYKGKKFDCFDEIKDKKTVKGVLKEYILSKGIKIYKGLQQAGRTDARVSAYSNYI 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTIS---ILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F R + + L I+ IS I N+ +R Y+Y Sbjct: 68 YFVADRFNIDI---------LDINVDISGLKIKNIIETKNDIVLPDIVEKRIYIY----- 113 Query: 120 QAPLALEKGRAWLIPKSL---DCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHF 175 PK D E + + + G DF+ F + + + R + Sbjct: 114 ------------FYPKKFLNVDKETILKRCEEISGYRDFSEFTNHKGLKLKNHFRDVKVT 161 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 V + SF+ Q+R G + GK + D + Sbjct: 162 YVEEK-----LYFEGNSFMPQQVRIMSGYIL---KGKKEAMDPK 197 >gi|320164169|gb|EFW41068.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 311 Score = 71.4 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 43/202 (21%) Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 ++ I + V F+AR + R Y Y + T A ++ +D Sbjct: 12 NEQLPHDIRAHGYARVAGSFNARTACTSRVYSYTLPT----FAFAPYKSMTWDYRIDAAT 67 Query: 142 MRIAAQHL---VGRHDFTTFR-SIHCQASSPIRTIDHFDVN------------------- 178 ++ G H F + + + +R + VN Sbjct: 68 LQKVRDTFAKYTGSHRFHNYTIKVRINDAQAMRVMQSCTVNDPLLTPIDREWLAANPEPV 127 Query: 179 --------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + ++ + + +SF++ QIR VG + + G+ + + + Sbjct: 128 SADQPAPEGCPDHLTHLEMVTMVIEGQSFMYNQIRKMVGMVIAIVRGQSETFSIPNSFTL 187 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 + P AP GL + V++ Sbjct: 188 P--QMAVPRAPGLGLALERVKF 207 >gi|212723684|ref|NP_001131790.1| hypothetical protein LOC100193161 [Zea mays] gi|194692542|gb|ACF80355.1| unknown [Zea mays] gi|223946927|gb|ACN27547.1| unknown [Zea mays] Length = 173 Score = 71.0 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 17/131 (12%) Query: 134 PKSLDCENMRIAAQHLVGR--------HDFTTFRSIHC-------QASSPIRTIDHFDVN 178 P+S D + + L G+ D RS+ + + + + + + Sbjct: 32 PQSFDVSKVDEILKPLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANED 91 Query: 179 SFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G ++ + +VA FL +R V + + L ++A DR+ P APP Sbjct: 92 HKGGMVVMCVELVANRFLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPPAPP 151 Query: 237 EGLYFDSVEYS 247 EGL V Y Sbjct: 152 EGLCLVDVGYE 162 >gi|261190138|ref|XP_002621479.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081] gi|239591307|gb|EEQ73888.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081] Length = 605 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 24/170 (14%) Query: 14 GYFGWQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDSGVHALRQVAHF 64 GY G R +I+G + A I + + RTD GVHA V Sbjct: 128 GYSGIYRSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVSL 187 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L + + +N L S I + + I +K F + R Y Y I T Sbjct: 188 KL--IVEDSDIVQKINEQL--SPQIRVWGIEITNKSFSSYHLCDSRIYEYLIPTHCFLPP 243 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 SL + + IA Q +D ++ + ++ + +D Sbjct: 244 -------HPSTSLGQKLVEIAEQ----ENDLEGYKQRQAEVATYWKEVDE 282 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 L+ RA+ IPK + + A VG +F + + +S R I F ++ Sbjct: 371 LDAKRAYRIPKER-MDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLI 429 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V + LV + + + D K P AP Sbjct: 430 INGTEWLSLKVHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYE--DHKIAIPKAPGL 487 Query: 238 GLYFDS 243 GL + Sbjct: 488 GLLLER 493 >gi|116794266|gb|ABK27072.1| unknown [Picea sitchensis] Length = 212 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 17/115 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + M I Y G+ Y G Q Q++ +I+ +EKAI G + + Sbjct: 83 RKVAMRIGYVGTNYRGLQIQRDSASTITIEDELEKAILKAGGMLESNYGNLHKLGWRRSS 142 Query: 50 RTDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDK 99 RTD GVH+L V + E P + A + I I ++ V+K Sbjct: 143 RTDKGVHSLATVIAMKMEIPDGAWEEDPDGIALADVINRHLPYNIRIFSILPVNK 197 >gi|7670391|dbj|BAA95047.1| unnamed protein product [Mus musculus] Length = 257 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 35/147 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDS------------------GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 RTD GV A QV + W+ + +N++L I I Sbjct: 140 RTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSL---KVWLIDDILDKINSHL--PSHIRI 194 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIIT 118 L L V F+++ R+Y Y + T Sbjct: 195 LGLKRVTGGFNSKNKCDARTYCYMLPT 221 >gi|170585846|ref|XP_001897693.1| inosine-5'-monophosphate dehydrogenase family protein [Brugia malayi] gi|158595000|gb|EDP33577.1| inosine-5'-monophosphate dehydrogenase family protein [Brugia malayi] Length = 721 Score = 69.9 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 23/169 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 RY + Y+G+ + S+ + KA+ T G + + + RTD+GVHA+ Sbjct: 550 RYLLWASYDGARFLSIANGSINHSVLSFL-KALVRDTFPDIGMQLKISPSSRTDAGVHAM 608 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISD-----TISILNLSIVDKQFHARFSAIRRSYL 113 R + L+ + ++ + IL+ V K F +R + R Y Sbjct: 609 RNAFIMQIPIRNADESKSNLLHDWNHRANEFVGTSFRILDFHPVSKGFCSRRNVSYRKYK 668 Query: 114 YRII----------TRQAPLAL---EKGRAWLIPKSLDCENMRIAAQHL 149 YR+ + PL E+ W +P D A Sbjct: 669 YRLAIAENEEEWLKNTEQPLLWQFAERPYMWFLPNGFDMRKAADACSLF 717 >gi|300175206|emb|CBK20517.2| unnamed protein product [Blastocystis hominis] Length = 282 Score = 69.5 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 75/264 (28%), Gaps = 50/264 (18%) Query: 27 IQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL-CKALNAY 82 +QG E+ + + + V RT +A L + Sbjct: 15 VQGKEEETVDRINSCLPSDIRVFKILRTTKNFNAKNFCDRRQYEYILPIETLSPFSSTPP 74 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRA------------ 130 L I + IS V+ + A R I + R Sbjct: 75 LSIREDISHNWKEFVENE--AYLQKCREHPEESIDNPFEDRPDNRQRVKSLQIAQQLLLN 132 Query: 131 ------------------------WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA- 165 W SL +R VG H+F + A Sbjct: 133 EASFSTYTEDAQDRSFGGCVVKDEWPAYLSLALSRLRACMSLFVGTHNFHNYTVGKSSAD 192 Query: 166 SSPIRTIDHFDVN---SFGNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 SS R I V+ + + IRV +SF+ QIR +G V G+ + + Sbjct: 193 SSAQRHILGISVSDPIRIHDGLYIRVCLEGQSFMLHQIRKMIGIAIEVARGRCSLHTVNS 252 Query: 221 ALQAQDRKECGPLAPPEGLYFDSV 244 +L P+AP GL+ V Sbjct: 253 SLSRG--TMFTPMAPSTGLFLSMV 274 >gi|308812814|ref|XP_003083714.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus tauri] gi|116055595|emb|CAL58263.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus tauri] Length = 543 Score = 69.1 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 22/177 (12%) Query: 4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTG-----------EIVVVHGAG 49 +++ Y G+GY G G+++ +E A+F G + + + Sbjct: 90 VALLLAYVGAGYKGNTHNAQAVRGTTVDDVVEDALFRWGGILLPNYRSKGLQRLKWSRSS 149 Query: 50 RTDSGVHALRQVAHFDL---VREWVPVILCKALNAYL--KISDTISILNLSIVDKQFHAR 104 RTD GV +L V W + +A + + D + + K F AR Sbjct: 150 RTDKGVSSLCTVVSLRAEIDPEVWTTDVEARATARDITKHLPDDVECFAVYNTPKSFQAR 209 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 + R+Y Y + A + G A A +G H F + Sbjct: 210 RECVMRTYEYLL---PARVLGLDGDAMDESGRRRLALFNEALSCFIGSHPFHNYTKR 263 Score = 58.3 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 H+F+ + T + + + V SF+ QIR + S V G Sbjct: 358 HNFSA----GSEVERMTITNEDGSTTQSEPFVRVSVRGESFMLYQIRKMIASAVAVSLGH 413 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L +L R PLAP LY VE+ Sbjct: 414 CPLEFLPASLARPCR-AAMPLAPASTLYLYDVEF 446 >gi|145354770|ref|XP_001421649.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581887|gb|ABO99942.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 556 Score = 68.7 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 26/180 (14%) Query: 4 YCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTG-----------EIVVVHGAG 49 +++ Y G GY G G+++ +E A+F G + + + Sbjct: 91 VAIVLAYVGQGYKGNTHNAQAPRGTTVDDVVEDALFAWGGILMPNYRSRGLQRLKWSRSS 150 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYL-------KISDTISILNLSIVDKQFH 102 RTD GV +L V P + K + A + + + + K F Sbjct: 151 RTDKGVSSLCTVVSLRAE--IDPEVWTKDVEARETAREITKHLPEDVECFAVYNTPKSFQ 208 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 AR I R+Y Y + A + + + E A VG H F + Sbjct: 209 ARRECIMRTYEYLL---PARVLDLERGVLDASDAERLELFSKALAAFVGAHPFHNYTKRK 265 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 41/121 (33%), Gaps = 8/121 (6%) Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 +G WL + +I H H+FT T D + I Sbjct: 338 RRGTYWLYESDPND---KIGPSHFRRIHNFTA----GADVERMEITNDDGSKTTSEPFIR 390 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + V SF+ QIR + S V G L +L R PLAP LY VE Sbjct: 391 VSVRGESFMLYQIRKMIASAVAVSLGHCPLEFLPASLSRPCR-AAMPLAPASTLYLYDVE 449 Query: 246 Y 246 + Sbjct: 450 F 450 >gi|125583196|gb|EAZ24127.1| hypothetical protein OsJ_07867 [Oryza sativa Japonica Group] Length = 518 Score = 68.3 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 7/110 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG-----NLIEIRVVARSF 193 E + VG H+F F + + R I F + + I VV +SF Sbjct: 316 ERFNRILKKYVGTHNFHNFTTRTKAEDPAAKRFIISFAADRVVNLDGIDFIRCEVVGQSF 375 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + QIR +G V + +D P AP GLY D Sbjct: 376 MLHQIRKMIGLAVAVMRNC-APESIYDVAFRKDVNLNVPTAPEVGLYLDE 424 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 37/113 (32%), Gaps = 20/113 (17%) Query: 18 WQRQKNGSSIQGSIEK----AI-FLVTGEIVVVHG--------AGRTDSGVHALRQVAHF 64 Q+ +I+G A+ G G A RTD GV A QV Sbjct: 1 MQKNPGARTIEG---DPGGGALPGRRPGPRPNAPGPAATTGARAARTDKGVSAAAQVVSG 57 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 P + LNA L I V F+A+ RR Y+Y + Sbjct: 58 RF--YVDPPVFTDRLNAQLA--PQIRAFGYVRVTNSFNAKKFCDRRRYVYLLP 106 >gi|322494865|emb|CBZ30168.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 700 Score = 67.9 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 55/182 (30%), Gaps = 55/182 (30%) Query: 6 MIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIF------------LVTGEIVVVHGAGRT 51 +I Y G Y G Q +++ + KA+F L +++ A RT Sbjct: 60 IIFGYVGECYCGLQWNHLPEYPTVEEVLMKALFETDMISEVNFSNLKVQKLLNFERASRT 119 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNA------------------------------ 81 D GVHALR V ++ + P K L A Sbjct: 120 DKGVHALRNVVSVAVMLPYDPSYTKKHLAALQEHAEGAAAGEVHTADGDVEDDANSAQAA 179 Query: 82 -----------YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRA 130 + I + + V + F+A + R Y Y + T A E Sbjct: 180 VFSCEEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFALMTAAEYSET 239 Query: 131 WL 132 + Sbjct: 240 YF 241 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 176 DVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 DV + G ++ I + +SF+ QIR +G++ V T + L + + P+A Sbjct: 554 DVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCVAAAGLPETYIRDVLLRKAVRRGIPMA 613 Query: 235 PPEGLYF 241 P GL+ Sbjct: 614 PANGLFL 620 >gi|302754550|ref|XP_002960699.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii] gi|300171638|gb|EFJ38238.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii] Length = 403 Score = 67.5 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 30/182 (16%) Query: 3 RYCMIIEYNGSGYFG---------WQRQKNGSSIQGSIEKAIFLVTG---------EIVV 44 + M I Y G+GY G + ++I+ ++KAI+ G V Sbjct: 4 KVAMWIGYVGTGYKGNHCSLFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHMKVG 63 Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVI-------LCKALNAYLKISDTISILNLSIV 97 + RTD GVH+L V + + +N +L I + + V Sbjct: 64 WARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADMINRHL--PQCIRVFGVVPV 121 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 K F R + RSY Y + + + + + K L E R+ + G H F Sbjct: 122 SKTFRPRMACSERSYDYFLP--ALCVGINQRVSTCEIKQL-LEQFRLQLKLFEGEHPFHN 178 Query: 158 FR 159 + Sbjct: 179 YT 180 Score = 48.3 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 176 DVNSFGNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 D+ FG+ + +RV SF+ QIR +G+ V ++ +L + + P+ Sbjct: 260 DIEKFGDTLALRVSVTGASFMVHQIRKMIGTAVAVTRKLLPPDIIQMSL-CRHSRIVLPI 318 Query: 234 APPEGLYF 241 AP EGL Sbjct: 319 APCEGLTL 326 >gi|255088754|ref|XP_002506299.1| predicted protein [Micromonas sp. RCC299] gi|226521571|gb|ACO67557.1| predicted protein [Micromonas sp. RCC299] Length = 601 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 30/195 (15%) Query: 4 YCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLV-----------TGEIVVVHGAG 49 +++ Y G+GY G GS++ +E A+F + + + Sbjct: 113 VALLMGYVGAGYSGNTTNASLPRGSTVDDVLEDALFDAGCILLSNYRSRSLSRLKWSRSS 172 Query: 50 RTDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 RTD GV +L V L E P A + + + + + K F AR Sbjct: 173 RTDKGVSSLATVVSARLEVDVGVWENDPEGTRIAADINRHLPNHVRVFGAYSTPKSFQAR 232 Query: 105 FSAIRRSYLYRII--------TRQAPLALEKGRAWLIPKSLDCENM---RIAAQHLVGRH 153 + +RR+Y Y + + AL A + + E M R A + G H Sbjct: 233 RACVRRTYDYLLPATCLGLNVNGERDAALAWPGAPELADATGEEVMARFRRALRMFEGSH 292 Query: 154 DFTTFRSIHCQASSP 168 F + A +P Sbjct: 293 YFHNYTRRSAYAPAP 307 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + V SF+ QIR + + G + + +L R P+AP LY Sbjct: 398 PPFVRVTVNGDSFMLYQIRKMIATAVAAAIGHFPLELIPASLTRPAR-IATPIAPASTLY 456 Query: 241 FDSVEY 246 E+ Sbjct: 457 LVDAEF 462 >gi|269864426|ref|XP_002651569.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220064284|gb|EED42489.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 147 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 + + I Y+G Y G Q+ NG SI +E A+ + E + GRTD GV A Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALKSTDLYIESNDIVFCGRTDRGVSAAN 124 Query: 60 QVAHFDLVREWV 71 + + Sbjct: 125 MIISLKIKSILE 136 >gi|66807627|ref|XP_637536.1| hypothetical protein DDB_G0286567 [Dictyostelium discoideum AX4] gi|60465972|gb|EAL64039.1| hypothetical protein DDB_G0286567 [Dictyostelium discoideum AX4] Length = 615 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 35/185 (18%) Query: 5 CMIIEYNGSGYFGWQRQKNGS--SIQGSIEK--------AIFLVTG-EIVVVHGAGRTDS 53 + YNGS Y+G + +I+ IEK A+ + + + + + RTD Sbjct: 151 ALCFAYNGSKYYGSSYSFDIRFPAIENLIEKSLIRNGHIALENIGNLKRIKLSRSSRTDK 210 Query: 54 GVHALRQVAHFDLVREWVPVILCK--------ALNAYLKISDTISILNLSIVDKQFHARF 105 GVH++ V L+ + L + N + I +++ + + F AR Sbjct: 211 GVHSVSTVISAFLLIDKETERLAQFGTPPQYFIDNINRYLPSDIRLISATKPSRTFRARP 270 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIH 162 ++ R Y Y + K + + M + +G H++T R + Sbjct: 271 ASKSRVYNYLVPMDHL-------------KDISIDRMNSILSNFIGTSSFHNYTYQRFTY 317 Query: 163 CQASS 167 +++ Sbjct: 318 LDSNT 322 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 7/85 (8%) Query: 169 IRTIDHFDVNSF------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 +RTI +F V VV SFL QIR +G V G L+ +L Sbjct: 395 VRTIMNFYVEKETVLFEGKQWYRFVVVGDSFLMYQIRKMMGFFLSVVKGYQNEIGLQLSL 454 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 ++ C P++PP L+ V + Sbjct: 455 KSP-FSICSPISPPFPLFLYDVNFP 478 >gi|300123845|emb|CBK25116.2| unnamed protein product [Blastocystis hominis] Length = 282 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 74/264 (28%), Gaps = 50/264 (18%) Query: 27 IQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL-CKALNAY 82 +QG E+ + + + V RT +A L + Sbjct: 15 VQGKEEETVDRINSCLPSDIRVFKILRTTKNFNAKNFCDRRQYEYILPIETLSPFSSTPP 74 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRA------------ 130 L I + IS V+ + A R I + R Sbjct: 75 LSIREDISHNWKEFVENE--AYLQKCREHPEESIDNPFEDRPDNRQRVKSLQIAQQLLLN 132 Query: 131 ------------------------WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA- 165 W SL +R VG H+F + A Sbjct: 133 EASFSTYTEDAQDRSFGGCVAKDEWPAYLSLALSRLRACMSLFVGTHNFHNYTVGKSSAD 192 Query: 166 SSPIRTIDHFDVN---SFGNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 SS R I V+ + + IRV +SF+ QIR +G V G+ + Sbjct: 193 SSAQRHILGISVSDPIRIHDGLYIRVCLEGQSFMLHQIRKMIGIAIEVARGRCSLHTANS 252 Query: 221 ALQAQDRKECGPLAPPEGLYFDSV 244 +L P+AP GL+ V Sbjct: 253 SLSRG--TMFTPMAPSTGLFLSMV 274 >gi|226293711|gb|EEH49131.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18] Length = 597 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 LE RA+ IPK + + A VG +F + + +S R I F ++ Sbjct: 348 LEAKRAYRIPKER-IDRINDALDLYVGTRNFHNYTIQKSFREASAKRHIKSFKISRDPII 406 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V + +V + + D+K P AP Sbjct: 407 INGTEWLSLKVHGQSFMMHQIRKMVAMVAMVVRCGCDIQRIPE--TYGDQKIAIPKAPGL 464 Query: 238 GLYFDS 243 GL + Sbjct: 465 GLLLER 470 Score = 66.4 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 14/135 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q + +I+G + AI + + RTD Sbjct: 134 RKVAVLLGYSGSGYHGMQLSQTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 193 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L + + +N +L S I + + + +K ++ + A +Y Sbjct: 194 KGVHAAGNVVSLKL--IVEDSDVVQKINNHL--SPQIRVWGIEVTNKSYN-QRQAEVATY 248 Query: 113 LYRIITRQAPLALEK 127 ++ LE+ Sbjct: 249 WEKVDEEYIKPILER 263 >gi|269861921|ref|XP_002650634.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220065855|gb|EED43425.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 152 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 + + I Y+G Y G Q+ NG SI +E A+ + E + GRTD GV A Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALRSTDLYIESNDIVFCGRTDRGVSAAN 124 Query: 60 QVAHFDLVREWV 71 + + Sbjct: 125 MIISLKIKSILE 136 >gi|331234741|ref|XP_003330029.1| pseudouridine synthase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309019|gb|EFP85610.1| pseudouridine synthase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 252 Score = 66.4 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 12/97 (12%) Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 + +++ +L V F RFS R Y Y ++P A LD E M+ Sbjct: 116 LHNSVRVLAWLPVHHDFDTRFSCQARHYKYFFSLYKSPQA----------PGLDIEAMKW 165 Query: 145 AAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVNS 179 AA L+G HDF F I Q + R I ++ Sbjct: 166 AAHRLIGEHDFHNFFKIDPSKQLTHFRRKILSAEIKP 202 >gi|312066617|ref|XP_003136355.1| IMP dehydrogenase 1 [Loa loa] gi|307768482|gb|EFO27716.1| IMP dehydrogenase 1 [Loa loa] Length = 690 Score = 66.4 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 23/169 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 RY + Y+G+ + S+ + KA+ T G+ + + RTD+GVHA+ Sbjct: 519 RYLLWASYDGARFMAVANGSINHSVLSFL-KALVRGTFPDIGKQFKMSPSSRTDAGVHAI 577 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISD-----TISILNLSIVDKQFHARFSAIRRSYL 113 R + V L+ + + ++ +L+ V K F +R + R Y Sbjct: 578 RNAFIMQIPIGNVDEDKSNLLDDWNHKTKECIGTSLRVLDFHAVSKGFCSRRNVSYRKYK 637 Query: 114 YRII----------TRQAPLAL---EKGRAWLIPKSLDCENMRIAAQHL 149 YR+ + PL E+ W +P D A Sbjct: 638 YRLAIAENEEEWLKNAEQPLLWQFAERPYIWFLPNGFDIRKAADACSLF 686 >gi|322502433|emb|CBZ37516.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 701 Score = 66.0 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 55/182 (30%) Query: 6 MIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHGAGRT 51 +I Y G Y G Q +++ ++ KA+F +++ A RT Sbjct: 60 IIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQLLNFERASRT 119 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNA------------------------------ 81 D GVHALR V ++ + P K + A Sbjct: 120 DKGVHALRNVVSVAVMLPYDPSYTKKRVAALQEHAEGAAAGEVYNADGDVEDDANSAQAA 179 Query: 82 -----------YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRA 130 + I + + V + F+A + R Y Y + T A E + Sbjct: 180 VFSCDEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFALMTAAEYTKT 239 Query: 131 WL 132 + Sbjct: 240 YF 241 Score = 60.2 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 176 DVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 DV + G ++ I + +SF+ QIR +G++ + G + + L + + P+A Sbjct: 555 DVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAAGGLPDSYIRDVLLRKGVRRGIPMA 614 Query: 235 PPEGLYF 241 P GL+ Sbjct: 615 PANGLFL 621 >gi|146098588|ref|XP_001468420.1| hypothetical protein [Leishmania infantum] gi|134072788|emb|CAM71504.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 701 Score = 66.0 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 55/182 (30%) Query: 6 MIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHGAGRT 51 +I Y G Y G Q +++ ++ KA+F +++ A RT Sbjct: 60 IIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQLLNFERASRT 119 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNA------------------------------ 81 D GVHALR V ++ + P K + A Sbjct: 120 DKGVHALRNVVSVAVMLPYDPSYTKKRVAALQEHAEGAAAGEVYNADGDVEDDANSAQAA 179 Query: 82 -----------YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRA 130 + I + + V + F+A + R Y Y + T A E + Sbjct: 180 VFSCDEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFALMTAAEYTKT 239 Query: 131 WL 132 + Sbjct: 240 YF 241 Score = 60.2 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 176 DVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 DV + G ++ I + +SF+ QIR +G++ + G + + L + + P+A Sbjct: 555 DVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAAGGLPDSYIRDVLLRKGVRRGIPMA 614 Query: 235 PPEGLYF 241 P GL+ Sbjct: 615 PANGLFL 621 >gi|308448942|ref|XP_003087803.1| hypothetical protein CRE_15245 [Caenorhabditis remanei] gi|308252628|gb|EFO96580.1| hypothetical protein CRE_15245 [Caenorhabditis remanei] Length = 195 Score = 66.0 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 26/167 (15%) Query: 107 AIRRSYLYRIITRQAPLAL---EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A+ RS+ RQ P E+ AW +P E + A + G +F Sbjct: 11 AVCRSWELWESIRQEPSIACFSERDYAWRLPPGFSPERLLTAGRRFEGEQVMGSFFKHTN 70 Query: 164 QAS-------SPIRTIDHFDVNSFG---------NLIEIRVVARSFLHTQI-R--SFVGS 204 + S ++ I H +++ + + +VA+SF+ Q+ R + Sbjct: 71 REKRFEPITPSALKYILHVGLSNGEAYSINNDIYDYYNVTIVAKSFVREQVCRFILMMSC 130 Query: 205 LKLVGDGKWTSTDLEKALQAQD----RKECGPLAPPEGLYFDSVEYS 247 L + ++ L P+APP+GL+ V Y Sbjct: 131 LVNYSYDRIPLATVDWLLNNPISSNFFDMGIPIAPPQGLFLTDVVYD 177 >gi|157875459|ref|XP_001686121.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129195|emb|CAJ07732.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 701 Score = 66.0 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 59/184 (32%) Query: 6 MIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHGAGRT 51 +I Y G Y G Q +++ ++ KA+F +++ A RT Sbjct: 60 IIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQLLNFERASRT 119 Query: 52 DSGVHALRQVAHFDLVREWVP--------------------------------------- 72 D GVHALR V ++ + P Sbjct: 120 DKGVHALRNVVSVAVMLPYDPSYTKKRVAVLQEHAEGAAAGEVYNADGDVEDDANSAQTA 179 Query: 73 ----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + LN L I + + V + F+A + R Y Y + T A E Sbjct: 180 VFSCEEAKRLLNEAL--PRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFALMTAAEYS 237 Query: 129 RAWL 132 + + Sbjct: 238 KTYF 241 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 75/258 (29%), Gaps = 49/258 (18%) Query: 21 QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL----RQVAHFDLVREWVPVILC 76 Q + + +Q ++E+A A R +A L R + Sbjct: 376 QDSDAEVQAALERA------------SAARPCEDNYATHFHDGLFESMILFRSIPADAMR 423 Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFS--AIRRSY---LYRIITR---QAPLALEK- 127 N L + +L + H + RSY YR I P + Sbjct: 424 HVTNYRLPAEQLQHVRHLFHEYEGTHCYHNFTPGGRSYDASCYRFIRSVVVSDPFVVSPE 483 Query: 128 ---------GRAWLIPKSLDC-------ENMRIA-AQHLVG------RHDFTTFRSIHCQ 164 + S D E M A L G H Sbjct: 484 EELLQHSIDSWSLNHFYSPDERVAATYEEWMTEGEAAELQGAAVSVSEHGKLQIPKSADA 543 Query: 165 ASSPIRTIDHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 A DV + G ++ I + +SF+ QIR +G++ + + + L Sbjct: 544 ALRERMRQHIRDVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAAAGLPGSYIRDVLL 603 Query: 224 AQDRKECGPLAPPEGLYF 241 + + P+AP GL+ Sbjct: 604 RKGVRRGIPMAPANGLFL 621 >gi|328871318|gb|EGG19689.1| hypothetical protein DFA_00267 [Dictyostelium fasciculatum] Length = 568 Score = 65.6 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 34/174 (19%) Query: 6 MIIEYNGSGYFG----WQRQKNGSSIQGSIEKAIFL-------VTGEIVVV--HGAGRTD 52 M+ Y G+GY G Q + +++ +E+A+FL G+ + + RTD Sbjct: 134 MLFAYVGTGYHGLEFHMTDQ-DYPTLENCLERALFLSGMILPTNFGDPSRLNWRRSSRTD 192 Query: 53 SGVHALRQVAHFDLV----REWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARF 105 GVH++ + +L R P + +N+ L D + I+++ + K F R Sbjct: 193 KGVHSMSTIIKANLEIDRSRMLTPEKIADYVALINSNL--PDALRIISMEMTKKSFDPRR 250 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 I R+Y Y + + +LD E +I +G + F Sbjct: 251 QGIARTYHYVLPKKYLGD----------RYTLD-EINQIILPMFIGNFSYHNFT 293 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 ++ S ++ + SF+ QIR +G + + +GK LE AL + Sbjct: 382 LEETFQESGQEWVKFVIEGESFIQYQIRKMMGFVLAITNGKTDLKTLELALHSPFSIHA- 440 Query: 232 PLAPPEGLYF 241 P+APP LY Sbjct: 441 PIAPPNPLYL 450 >gi|298705212|emb|CBJ28643.1| pseudouridylate synthase 3 [Ectocarpus siliculosus] Length = 472 Score = 65.6 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 16/96 (16%) Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 + + L + V + F ARFS R+Y Y + + + +D + Sbjct: 379 NRVLPPGVRTLAWAPVTEGFSARFSCSDRTYRY----------------FFMARDMDVKA 422 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 M AA +VG HDF I + + I +D+ V Sbjct: 423 MNEAASKIVGSHDFRNLCKIGTKGHTRIVLVDYMAV 458 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 11/77 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV---------HGAGRTDSG 54 + + Y G GY G+ Q G+ + +IEK +F +V GRTD G Sbjct: 107 VAVQLMYEGGGYAGFCSQSEGN--EETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRG 164 Query: 55 VHALRQVAHFDLVREWV 71 V AL V + ++ Sbjct: 165 VSALGNVITVSMRSKFP 181 >gi|225678874|gb|EEH17158.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb03] Length = 547 Score = 65.6 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 LE RA+ IPK + + A VG +F + + +S R I F ++S Sbjct: 313 LEAKRAYRIPKER-IDRINDALDLYVGTRNFHNYTIQKSFREASAKRHIKSFKISSDPII 371 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V + +V + + D+K P AP Sbjct: 372 INGTEWLSLKVHGQSFMMHQIRKMVAMVAMVVRCGCDIQRIPE--TYGDQKIAIPKAPGL 429 Query: 238 GLYFDS 243 GL + Sbjct: 430 GLLLER 435 Score = 63.3 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 25/171 (14%) Query: 18 WQRQKNGSSIQGSIEKA------IFLVT---GEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 W+ Q +I+G + A I + + RTD GVHA V L Sbjct: 70 WRSQTE-KTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVSLKL-- 126 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + + +N +L S I + + + +K F + R Y Y I T Sbjct: 127 IVEDSDVVQKINNHL--SPQIRVWGIEVTNKSFSSYQLCDSRVYEYLIPTHCFLPPHPST 184 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A+ +D + + ++ +D + Sbjct: 185 YLGQ--------KLVEIAEM---ENDLEGYNQRQAEVATYWEKVDEEYIKP 224 >gi|325182026|emb|CCA16479.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 97 Score = 65.2 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVH 56 Y M I Y G+ + GWQRQ S S+Q IE ++ E V V+ RTD+G H Sbjct: 24 YGMSIAYYGTDFIGWQRQPAASKPGFFSVQQIIEDSLSRALSKSERVNVNAVSRTDAGTH 83 Query: 57 A 57 A Sbjct: 84 A 84 >gi|46205445|ref|ZP_00048530.2| COG0223: Methionyl-tRNA formyltransferase [Magnetospirillum magnetotacticum MS-1] Length = 189 Score = 65.2 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 21/28 (75%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQ 28 M RY ++IEY+G+ + GWQRQ + ++Q Sbjct: 156 MPRYKLVIEYDGAPFCGWQRQADDPTVQ 183 >gi|255023069|ref|ZP_05295055.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-208] Length = 33 Score = 65.2 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK 33 M RY II Y+GSG++G+Q Q N ++Q IEK Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEK 33 >gi|257468648|ref|ZP_05632742.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] gi|317062905|ref|ZP_07927390.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688581|gb|EFS25416.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 283 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 72/218 (33%), Gaps = 34/218 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y I YNG+ + + SI+G + + + V AGRTD+ V A + Sbjct: 14 YMFYISYNGAKFQSFDEMNEKKSIKGKFREVMEKIGFTWAKGVQQAGRTDAKVSANENIL 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + + N L ++++ K F P Sbjct: 74 YVSSNFNGNIKKIQEDFNKNSDTD-----LKVTMIKKTF---------------PNIVFP 113 Query: 123 LALE-KGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDV 177 +E + + P+ L E + + L G +D + F + IR +V Sbjct: 114 DMIEKREYIYSYPEKLIKNTEEEIEKLCKELSGTYDVSEFTDKKGLELKEHIR-----EV 168 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++R + SF+ Q+R G + GK Sbjct: 169 KITYENGKLRFLGNSFMPKQVRIMSGYIL---TGKKEP 203 >gi|154334040|ref|XP_001563275.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060287|emb|CAM45698.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 764 Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 52/165 (31%) Query: 6 MIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHGAGRT 51 +I Y G Y G Q +++ ++ KA+F +++ A RT Sbjct: 126 IIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFANFKVQQLLNFERASRT 185 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK--------------------------- 84 D GVHALR V ++ + P + L A + Sbjct: 186 DKGVHALRNVVSVAVMLPYDPAYAKRRLAAMQEHTKGTAAGETHNVDGDSEEDANDAIFS 245 Query: 85 -----------ISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + + + + V + F+A + R Y Y + T Sbjct: 246 CEEAKRLLNKALPRDLHVYGVVPVTRSFNAYLNCGGRRYEYYLPT 290 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 176 DVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 DV + G ++ I + +SF+ QIR +G++ + + L + + P+ Sbjct: 618 DVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAAAGLPLNHIRDVLLRKGVRRGIPMV 677 Query: 235 PPEGLYF 241 P GL+ Sbjct: 678 PANGLFL 684 >gi|145609509|ref|XP_367752.2| hypothetical protein MGG_07663 [Magnaporthe oryzae 70-15] gi|145016878|gb|EDK01308.1| hypothetical protein MGG_07663 [Magnaporthe oryzae 70-15] Length = 720 Score = 63.7 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 9/112 (8%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG------NLIEIRVVAR 191 ++ A VG H+F + + SS R I F VN + ++V + Sbjct: 503 IGKLQAALDKYVGTHNFHNYTILKKFTDSSAKRHIKSFKVNPEPIQIGETEWVSLKVHGQ 562 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR V L + ++ +A+ + P AP GL + Sbjct: 563 SFMMHQIRKMVAMAVLTVRCGVPLDRITQSYEAK--RISIPKAPGLGLLLER 612 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 9/88 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTDS 53 + ++I Y G+GY G Q +I+G + + AI + V + RTD Sbjct: 113 KVAVLIGYAGTGYKGMQINHFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRCARTDK 172 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNA 81 GVHA V L+ L NA Sbjct: 173 GVHAASNVISLKLIVPLEEKELAGNGNA 200 Score = 41.4 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%) Query: 71 VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 L +N++L D I + ++ + F + R Y Y + T Sbjct: 286 TMADLVARINSHL--PDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHALIPPHPDSY 342 >gi|269862295|ref|XP_002650782.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220065627|gb|EED43275.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 241 Score = 63.3 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 24/143 (16%) Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 ++ L L + I + + V F AR + +R Y Y P L Sbjct: 52 KKHDAKELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTC---PPQLLP 108 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR---SIHCQASSPIRTIDHFDVNSFGN-- 182 + A + + DF F + + ++ + + Sbjct: 109 KY-------------QEAGRIIYKTEDFYNFCTHSKVDANYKFKLSMLEFVSITPIPSQD 155 Query: 183 ---LIEIRVVARSFLHTQIRSFV 202 L + + A SFLH +R Sbjct: 156 TKILCAMNISAYSFLHNMVRKIF 178 >gi|227497211|ref|ZP_03927459.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226833342|gb|EEH65725.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 49 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV 43 R + + Y+G+G+ GW Q +++G + A+ V E V Sbjct: 9 RLRLDLAYDGAGFKGWAAQPGLRTVEGELTAALATVLREPV 49 >gi|310779345|ref|YP_003967678.1| pseudouridylate synthase-like protein [Ilyobacter polytropus DSM 2926] gi|309748668|gb|ADO83330.1| pseudouridylate synthase-like protein [Ilyobacter polytropus DSM 2926] Length = 292 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 63/214 (29%), Gaps = 26/214 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y I Y G + + KN S++ + + + + AGRTD+ V A + Sbjct: 21 YLFYISYRGGSFDSFDEVKNKKSVKERFREIMNSIGFTWAKGIQQAGRTDAKVSAGENIL 80 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + N + I + R Y YR + Sbjct: 81 YVSSSYSGDMEEIEARFNE--ISKKEMKIKKIQKTLSDLVIPDLVEAREYCYRYPAAKIK 138 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFG 181 + E + + L G +D + F Q IR++ G Sbjct: 139 N--------------NEEKIESLCRELSGTYDVSEFTDFKGQKLKEKIRSV-EISFKDKG 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + SF+ Q+R G + G+ T Sbjct: 184 ----LWFKGSSFMPKQVRIMSGYIL---TGEKTP 210 >gi|294897084|ref|XP_002775815.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983] gi|239882168|gb|EER07631.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983] Length = 708 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 44/183 (24%) Query: 5 CMIIEYNGSGYFGWQRQKNGSS----IQGSIEKAIFL--------VTGEIVVVHGAGRTD 52 +++ +NG+ Y G Q + ++ + A+ V + + + RTD Sbjct: 27 ALVVGFNGTKYRGLQMNADNCDRIDYVESDLLGAMKRAGVVKPDVVRLDEIQWTRSSRTD 86 Query: 53 SGVHALRQVAHFDLVREWVPV---------------ILCKALNAYLKISDTISILNLSIV 97 +GV A R V ++ P + +A+N L I + N + Sbjct: 87 AGVSAARIVVSAKILVHEAPEVKGNRQADRVNRTYPEVVEAINKEL--PREIKVFNCMKI 144 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 F+A+ S R Y Y + A D + ++ A H++ Sbjct: 145 CASFNAQKSCNWRHYSYYMPMSLAG---------------DVDKLQEALGKFTNAHNYHN 189 Query: 158 FRS 160 F + Sbjct: 190 FTN 192 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT-STDLEKA 221 C ++ T ++ + + + V + FL+ QIR +G+ G + + ++ A Sbjct: 355 CNSAIHSFTATPIEMGNGEKWVRVDVRGQFFLYNQIRLMIGAGIAYARGVFPSISCIQFA 414 Query: 222 LQAQDRKECGPLAPPEGLYFD 242 + + K PLAP GL Sbjct: 415 IDT-NYKFHSPLAPACGLILH 434 >gi|239791165|dbj|BAH72086.1| ACYPI006976 [Acyrthosiphon pisum] Length = 157 Score = 62.2 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIF----LVTGEIVVVHGAGRTDSGVHAL 58 I Y G Y G+ Q + +I+ + +A+ + + + H GRTD GV + Sbjct: 59 VVFKILYLGWDYHGFATQDVSEKTIEYELFRALTICCLIESRQTSNYHRCGRTDKGVSSF 118 Query: 59 RQVAHFDLVREWVPVI---LCKALNAYLKISDTISIL 92 QV + CK LN L I ++ Sbjct: 119 SQVISLTVRSNGDDSEELPYCKMLNRLL--PKDIRVV 153 >gi|317033787|ref|XP_001395447.2| tRNA pseudouridine synthase [Aspergillus niger CBS 513.88] Length = 517 Score = 61.8 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 13/111 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTDS 53 + +++ Y+G+GY G Q + +I+G + AI + + RTD Sbjct: 49 KVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCARTDK 108 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 GVHA + L + + +N L I + ++ + +K F + Sbjct: 109 GVHAAGNIVSLKL--IVEDDDIIQKINEKLSS--QIRVWDILVTNKSFSSY 155 Score = 55.2 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFG-- 181 L+ RA+ IP ++ A VG ++F + A S R I F + Sbjct: 278 LQAKRAYRIPAQR-LARVQEALDKYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPII 336 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V +V + + A K P AP Sbjct: 337 INGTEWLSLKVHGQSFMMHQIRKMVAMAAMVVRCGCDPQRIVETYGAN--KIAIPKAPGL 394 Query: 238 GLYFDS 243 GL + Sbjct: 395 GLLLER 400 >gi|170583041|ref|XP_001896406.1| hypothetical protein Bm1_24730 [Brugia malayi] gi|158596406|gb|EDP34751.1| hypothetical protein Bm1_24730 [Brugia malayi] Length = 189 Score = 61.8 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPP 236 + +++ + + FL QIR + L +G G + + L + K LAP Sbjct: 12 THYEFLQLTIKGKGFLWHQIRCIMALLCEIGLGNEKPDIITELLDIRLMPSKPIYGLAPA 71 Query: 237 EGLYFDSVEYS 247 L Y Sbjct: 72 FPLCLFDCSYE 82 >gi|332262433|ref|XP_003280267.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Nomascus leucogenys] Length = 191 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 17/105 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 84 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 143 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNL 94 RTD GV A QV + W+ + + +N++L I IL L Sbjct: 144 RTDKGVSAAGQVVSL---KVWLIDDILEKINSHL--PSHIRILGL 183 >gi|315929089|gb|EFV08321.1| tRNA pseudouridine synthase II [Campylobacter jejuni subsp. jejuni 305] Length = 58 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A FL QIR V S+ V +GK + +L++ ++A+ ++ LAPP GLY + Y Sbjct: 1 FKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAK-KQYNHFLAPPNGLYLSRICY 58 >gi|68059018|ref|XP_671487.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56487712|emb|CAH95346.1| hypothetical protein PB001270.00.0 [Plasmodium berghei] Length = 69 Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 25/55 (45%) Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL+ IR VG L VG G D++ AL + APP+GL + + Sbjct: 1 FLYHMIRIIVGVLIQVGVGILNFQDVKDALYNSKPLKVKLCAPPQGLCLKKILFP 55 >gi|70952835|ref|XP_745558.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525920|emb|CAH80907.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 507 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 6/96 (6%) Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLIEIRVVARSFLHTQIRSFVGSLK 206 G H+F F + ++ R I +FDV++ N I IR++ +SFL QIR + Sbjct: 366 GYHNFHCFTKNNID-TTTFRYIKYFDVSTVKLYDHNFISIRILGQSFLMHQIRKMITLAV 424 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + +L + L PP+GL Sbjct: 425 ETFRNATPKNSIYYSLNTKSYIPIL-LFPPDGLMLV 459 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +Y + + Y GS Y G Q Q K +I+ IE+ + + G + + RTD G Sbjct: 59 KYGLCVGYIGSRYHGCQGQGKEHMTIENEIERTLTKINAVKNNSKGFNYCLSRSARTDLG 118 Query: 55 VHALRQVAHFDL 66 VHAL + +++ Sbjct: 119 VHALYNLFVYNI 130 Score = 37.9 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 R+ LN+ L + I ++ V K F AR R Y Y T Sbjct: 197 ERKRKEKKFINLLNSNL--PNDIKCFDIYKVTKSFDARKFCSFRLYEYLFPT 246 >gi|290982091|ref|XP_002673764.1| predicted protein [Naegleria gruberi] gi|284087350|gb|EFC41020.1| predicted protein [Naegleria gruberi] Length = 495 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 81/262 (30%), Gaps = 66/262 (25%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVP--VILCKALNAYLKISDTISILN---LSIVDKQF 101 + RTD GVH++ + + + + N + + D++ + + + + F Sbjct: 42 ASSRTDKGVHSIANIFSCKVPESVKENVDWISELTNRFSNVEDSLRVFHLETIKEDAENF 101 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK----------SLDCEN----MRIAAQ 147 ++R + R+Y Y I + + + L K ++ E + Sbjct: 102 NSRKFGLWRTYEYFIPQYCLKGMISESKMTLYQKLAKKPTVTLPDVNLEAVCKQLNNVFS 161 Query: 148 HLVGRHDFTTFRSIHCQASS---------------------PIRTIDHFDVNSFG----- 181 + G +F F S S RT+ + Sbjct: 162 RMEGFKNFQNFTSNTTSNGSSEGGQEDDLDTFQNSDTVGNQYHRTVFQCFAKPYTIGVPN 221 Query: 182 ------------------NLIEIRVVARSFLHTQIRSFVGSLK--LVGDGKWTSTDLEKA 221 + I+V A FL+ QIR VG L+ + ++ A Sbjct: 222 SKLQQASGLAPISSSDALRGVLIKVTASGFLYHQIRKMVGLAISHLIFPKEINDEFIDIA 281 Query: 222 LQAQDRKECGPLAPPEGLYFDS 243 + +++ P AP + L Sbjct: 282 INSKE-TMFIPTAPGDSLILLH 302 >gi|148238175|ref|NP_001088988.1| pseudouridylate synthase 1 [Xenopus laevis] gi|57032536|gb|AAH88978.1| LOC496371 protein [Xenopus laevis] Length = 167 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 17/103 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +I Y+G GY G QR +I+ + +A+ L + + Sbjct: 55 RKVVFLIAYSGKGYHGMQRNVGTSQFKTIEDELVQALVLSECIPDNHAEDMKKMSFQRCA 114 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 RTD GV A QV + W+ + + +N L I IL Sbjct: 115 RTDKGVSAAGQVVSL---KIWLIDNVVEKINENL--PSHIRIL 152 >gi|302834750|ref|XP_002948937.1| hypothetical protein VOLCADRAFT_104122 [Volvox carteri f. nagariensis] gi|300265682|gb|EFJ49872.1| hypothetical protein VOLCADRAFT_104122 [Volvox carteri f. nagariensis] Length = 669 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 20/122 (16%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVH 46 M++ + + Y G+ + G Q ++G S+++ +E+A+F + V Sbjct: 217 MVKRSIALHVGYVGTAFKGLQVNRSGAPDSTVEEVLERAVFEAGLIAESNFGDLKKVKWS 276 Query: 47 GAGRTDSGVHALRQVAHFDL------VREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 RTD GVH++ V + + P L A + ++ + + + V K+ Sbjct: 277 RNSRTDKGVHSVSTVVGLRVLLRGDEGFDLDPEGLEVAADLNTRLPPQVRVFSAQRVQKK 336 Query: 101 FH 102 F+ Sbjct: 337 FN 338 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 169 IRTIDHFDVNSFGNLI-------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 RTI F + L+ +RV SF+ QIR +G V G L + Sbjct: 463 FRTITSFTADDPAPLVPGGVPCVRLRVRGMSFMLHQIRHMIGGALAVARGSLPLPLLRAS 522 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEYS 247 L Q R P APP L + Sbjct: 523 LAGQAR-VTVPRAPPHTLILAGCTFP 547 >gi|82595787|ref|XP_725993.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23481212|gb|EAA17558.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 1510 Score = 60.2 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLIEIRVVARSFLHTQIRSFVGSLK 206 G H+F F + ++ R I +FD+++ N I IR++ +SFL QIR + Sbjct: 1369 GYHNFHCFTKNNID-TTTYRYIKYFDISTVKLYDHNFISIRILGQSFLMHQIRKMITLTV 1427 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + +L ++ L PP+GL Sbjct: 1428 EIFRNATSKNSIYYSLNTKNYIPIL-LFPPDGLML 1461 Score = 55.6 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +Y + + Y GS Y G Q Q K +I+ IE+ + + G + + RTD G Sbjct: 1069 KYGLCVGYIGSRYHGCQGQGKEYMTIENEIERTLTKINAVKKTSKGFNYCLSRSARTDLG 1128 Query: 55 VHALRQVAHFDLVREW 70 VHAL + +++ + Sbjct: 1129 VHALYNLFVYNINIDI 1144 >gi|154274161|ref|XP_001537932.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150415540|gb|EDN10893.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 634 Score = 60.2 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 10/126 (7%) Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC-QASSPIRTIDHFDVNSFG-- 181 ++ +A+ IP+ + + A VG +F + + +S R I F ++ Sbjct: 320 IDAKKAYRIPRER-LDRINDALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLI 378 Query: 182 ----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++V +SF+ QIR V L+ + + D+K P AP Sbjct: 379 INGTEWLSLKVHGQSFMMHQIRKMVAMTALIVRCGCDIQLVPE--TYGDQKIAIPKAPGL 436 Query: 238 GLYFDS 243 GL + Sbjct: 437 GLLLER 442 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 13/104 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTDS 53 + +++ Y+GSGY G Q + +I+G + AI + + RTD Sbjct: 122 KVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDK 181 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 GVHA V L+ E + + +N +L S I + Sbjct: 182 GVHAAGNVVSLKLIVEDP--NVVQKINGHL--SPQIRQRQAEVA 221 >gi|298708456|emb|CBJ30580.1| conserved unknown protein [Ectocarpus siliculosus] Length = 822 Score = 60.2 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 44/237 (18%) Query: 55 VHALRQVAHFDLVREWVPVILCKAL--------NAYLKISDTISILNLSIVDKQFHARFS 106 V A + K L N+ + I +L V FHA Sbjct: 179 VSATADTICLRAPTTVPQEGIRKWLDDTNAALDNSDGNAREAIRLLGRMAVPSTFHAEIH 238 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ--------HLVGRHD---- 154 A RR Y Y + E + + + H G HD Sbjct: 239 AKRRRYEYLLPAWMLDETAEGPWEGPPRGQENLIPLLRRLRARGLRPFGHCNGEHDGTRR 298 Query: 155 ----FTTFRSIH-CQASSPIRTIDHFDVNSF-----------------GNLIEIRVVARS 192 + F + + S +R + F + + + + + Sbjct: 299 RCPLWHNFSASALPHSPSSLRRLFRFYAMEVIQSSPSSSQGGDAGASGADYVCLSINGDA 358 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC--GPLAPPEGLYFDSVEYS 247 F+ Q+R V G ++ + + +++ PLAP V YS Sbjct: 359 FMSQQVRGMVALAVAGARGLISAEGIAATIDPTRQEDLLPVPLAPAAPCSLAEVGYS 415 >gi|224082524|ref|XP_002306728.1| predicted protein [Populus trichocarpa] gi|222856177|gb|EEE93724.1| predicted protein [Populus trichocarpa] Length = 162 Score = 59.8 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 7/100 (7%) Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + +G HDF + ++ D+ L I++ +FL Q+ V L Sbjct: 26 KKFMGEHDFRNLCK-----TDAVKCRIVGDMFKGHQLCAIKIKGSAFLLHQVCCMVAVLL 80 Query: 207 LVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSV 244 ++G G + ++ L + RK +AP L V Sbjct: 81 MIGQGLESPDLIDALLDTRRTPRKPQYLMAPEIPLVLLPV 120 >gi|325115129|emb|CBZ50685.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 1140 Score = 59.8 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 8/175 (4%) Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A + ++ + I ++ I QF R Sbjct: 854 AKAMEGLHSFAAFRCEYSGKEKARHLMQDNPFCVIDSIRISPLQFDPWPQPSCGVSSARF 913 Query: 117 ITRQAP--LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT------TFRSIHCQASSP 168 P ++G A D + HD S+ Q S+ Sbjct: 914 SEVPVPKGSPGDRGEAHASQDPRDTQREDSEGGATETSHDANERLCHFAGASVLSQGSAV 973 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + D + + I VV FL+ +R VG+L V G+ ++ D+ +AL+ Sbjct: 974 FASPSFTDGHDLPQGLRIDVVGNRFLYKMVRKMVGALVQVALGRLSTEDIRRALE 1028 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 5/55 (9%) Query: 42 IVVVHGAGRTDSGVHALR---QVAHFDLVREWVPVILCKALNAYLKISDTISILN 93 VV+ A RTD GVHA Q + +N L + IL Sbjct: 506 PVVLRPASRTDRGVHAAGAICQYVSYYHPLHIPLESFVAGVNRRL--PSDVRILA 558 Score = 36.3 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 2/32 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSI 31 +++ Y+G+ + GW ++ S+ Sbjct: 219 TNLLLLVAYDGTDFSGWAANLSPQDRTLVASL 250 Score = 36.3 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%) Query: 137 LDCENMRIAAQHLVGRHDFTTFR--------SIHCQASSPIRTIDHFDVNS 179 D E M+ AA+ + G H F FR + H +P ID ++ Sbjct: 845 FDLEQMKQAAKAMEGLHSFAAFRCEYSGKEKARHLMQDNPFCVIDSIRISP 895 >gi|328772887|gb|EGF82924.1| hypothetical protein BATDEDRAFT_33866 [Batrachochytrium dendrobatidis JAM81] Length = 580 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-----VVVHGAGRTDSGVH 56 +R ++ YNG+G+ +R K +I+G++ + + + A T++G H Sbjct: 23 VRLAILYGYNGTGFDALERTKGEVTIEGTLLAVLASLLSADGKATFTNISRASTTEAGEH 82 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A +QV F+ P+IL + ++ + + V F AR + R+Y + I Sbjct: 83 ASKQVVSFETHAP-TPIILPAVEAVNKLLPSSMRVFRIIPVASDFSARRTCEARTYEFLI 141 Query: 117 IT 118 T Sbjct: 142 PT 143 Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 16/112 (14%) Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-------SFGNLIEIRVVARSFLHTQI 198 G H++ + S P I +++ + I++ A +F Q+ Sbjct: 380 LSLFNGTHNWHNY-IPGADQSDPRCYIRIINIDVRDTELHEGMEWVRIKIQAPAFARYQV 438 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG---PLAPPEGLYFDSVEYS 247 R + + +V + + A P AP L D Y+ Sbjct: 439 RRMMALVIMVLRTNTPHSVV-----ANSYGFAKMEIPEAPALSLVLDEPHYN 485 >gi|170585848|ref|XP_001897694.1| hypothetical protein [Brugia malayi] gi|158595001|gb|EDP33578.1| conserved hypothetical protein [Brugia malayi] Length = 140 Score = 59.1 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD----RKECGPLAPPEG 238 LIEI V++RSFL +QIR + ++ G+ L L + APP+G Sbjct: 45 LIEISVISRSFLRSQIRHMIRTIVEHAYGRLQWERLIWFLNNPNPENFHNSGMVAAPPQG 104 Query: 239 LYFDSVEYS 247 L+ + V Y Sbjct: 105 LFLEDVVYD 113 >gi|221113816|ref|XP_002154062.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 233 Score = 59.1 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 26/149 (17%) Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIA-AQHLVGRHDFTTFRS 160 H F A + Y Y P + LD ++ + D + F Sbjct: 11 HCMFYA-EKHYCYSFDNSMIPF-------FGCGSHLDYLEQNQCYSETFI--LDQSCF-- 58 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 I ++ E+ + +FL Q+R V L L+G G ++ Sbjct: 59 -----------IHEMVKKDLVDICEMEITGLAFLWHQVRCMVAVLLLIGLGVEKPEIIDH 107 Query: 221 AL--QAQDRKECGPLAPPEGLYFDSVEYS 247 L ++ ++ LA L Y Sbjct: 108 LLDVESCPKRPQYELASEIPLVLYDCTYD 136 >gi|253582898|ref|ZP_04860116.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835104|gb|EES63647.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 283 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 69/218 (31%), Gaps = 34/218 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y I YNG + + S++G + + V + AGRTD+ V A + Sbjct: 14 YMFYISYNGQKFQSFDEINGKKSVKGKFKDIMEKVGFTWAKGIQQAGRTDAKVSANENIL 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + + N L +++V K F P Sbjct: 74 YVSSNFNGDINKIQEKFNKNSDDE-----LKVTMVKKTF---------------PNIIFP 113 Query: 123 LALE-KGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDV 177 +E + + P+ L + + + L G +D + F + IR + Sbjct: 114 DMIEKREYIYSYPEKLIKNTEKEIEKLCKELSGIYDVSEFTDKKGLELKEHIREV-KITY 172 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +R + SF+ Q+R G + GK Sbjct: 173 ERGK----LRFLGSSFMPKQVRIMSGYIL---TGKKEP 203 >gi|170586436|ref|XP_001897985.1| tRNA pseudouridine synthase A [Brugia malayi] gi|158594380|gb|EDP32964.1| tRNA pseudouridine synthase A, putative [Brugia malayi] Length = 260 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 + D ++ R IH P + ++ I + + +SF+ QIR +G Sbjct: 15 FITYEDRSSMRYIHDFKCGPTQLVEDEVRGGMVEFITLYITGQSFMLHQIRKMIGMTVAT 74 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G T++ ++ + P AP GL D V Y Sbjct: 75 FRGLCGKTEVANTFLSE--RMDVPKAPGLGLVLDKVHYE 111 >gi|296004937|ref|XP_002808812.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7] gi|225632204|emb|CAX64089.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7] Length = 556 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 9/117 (7%) Query: 132 LIPKSLDCENMRIAAQHL---VGRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLI 184 + L+ E + VG H+F F + R I +FDV++ + + Sbjct: 367 HFKEDLNEEELNTFFDIFNNYVGYHNFHCFTKKKID-QTTYRFIKYFDVSTVKLFDYHFL 425 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++++ +SFL QIR + + + L ++ L P +GL Sbjct: 426 SVKILGQSFLMHQIRKMITLAVETYRKATSINSIYYCLNTKNYIPI-TLFPSDGLML 481 Score = 57.5 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 10/75 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTD 52 +Y + I Y GS Y G Q Q +N +I+ ++E+ + + + + RTD Sbjct: 52 KYALCIGYIGSQYHGCQGQGENCETIENTLERTLLKINAIKKKKFFKNFNFCLSRSARTD 111 Query: 53 SGVHALRQVAHFDLV 67 GVHAL + +++ Sbjct: 112 QGVHALFNIFVYNVD 126 >gi|158520883|ref|YP_001528753.1| pseudouridylate synthase-like protein [Desulfococcus oleovorans Hxd3] gi|158509709|gb|ABW66676.1| Pseudouridylate synthase-like protein [Desulfococcus oleovorans Hxd3] Length = 148 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 F F AI ++Y Y I++R A+ + AW + + L+ + +R A + G HD Sbjct: 16 DFFEPAFQAISKTYRYWIVSRPTSAAIGRQYAWHLSRPLEIKAIRQALPLVTGTHDL 72 >gi|207109637|ref|ZP_03243799.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_CA4C1] Length = 93 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 5/93 (5%) Query: 158 FRSIHCQASSPIRTIDHFDVNSF----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 F+ ++P R I + + +++ +FL + +R + + K Sbjct: 2 FKKEGGATTNPKRAIFNAFAYKTFIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKI 61 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 T ++E + P+ GLY V Y Sbjct: 62 TLAEIEMQIHNIKATIRTPIM-ANGLYLHRVYY 93 >gi|222630952|gb|EEE63084.1| hypothetical protein OsJ_17892 [Oryza sativa Japonica Group] Length = 126 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA---PPEGLYFDSVEYS 247 V L VG + K + A+DRKE +A PP GLY SV Y Sbjct: 49 VALLLQVGREALPPDIVAKIIAARDRKELAKVALSAPPHGLYLMSVNYD 97 >gi|312066615|ref|XP_003136354.1| hypothetical protein LOAG_00766 [Loa loa] gi|307768481|gb|EFO27715.1| hypothetical protein LOAG_00766 [Loa loa] Length = 141 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%) Query: 165 ASSPIRTIDHFDVN----SFGNL-----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + +R + H ++ FGN+ I+I V++RSFL +QIR V S+ G+ Sbjct: 18 RTPTMRHLLHVGISGGGSRFGNVNGFSVIDINVISRSFLRSQIRHMVRSIVEHAYGRLQR 77 Query: 216 TDLEKALQAQD----RKECGPLAPPEGLYFDSVEYS 247 L L + APP+GL+ + V Y Sbjct: 78 ERLVWLLNNPNPENFHHFGMVAAPPQGLFLEDVVYD 113 >gi|51235381|gb|AAT98576.1| tRNA pseudouridine synthase [Pneumocystis carinii] Length = 227 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 28/143 (19%) Query: 25 SSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL 75 +I+G + +A G + ++ A RTD GVHA V L L Sbjct: 5 RTIEGDLFRAFVDTGGIAEMNADDPKKSSLNRAARTDRGVHAACNVLSLKL--IIEQPNL 62 Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK 135 + +N L +TI + +S K F+ R R Y Y + + ++ P Sbjct: 63 LERINEAL--PETIRVWGISRTLKSFNPRTFCEARIYEYLVPS----------YVFIPPY 110 Query: 136 SLDCENMRIAAQHLVGRHDFTTF 158 M AQ + + Sbjct: 111 P-----MTQLAQRITKHREMINC 128 >gi|221052120|ref|XP_002257636.1| pseudouridylate synthase 1 [Plasmodium knowlesi strain H] gi|193807466|emb|CAQ37972.1| pseudouridylate synthase 1, putative [Plasmodium knowlesi strain H] Length = 524 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 11/76 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVV----------HGAGRT 51 +Y + I Y GS Y G Q Q K+ +I+ IE+ + + G + RT Sbjct: 51 KYALCIGYVGSRYHGCQGQGKDCMTIENEIERTLIKMNGVGRRGGCKKDFNFCQSRSART 110 Query: 52 DSGVHALRQVAHFDLV 67 D GVHAL V + + Sbjct: 111 DLGVHALYNVFVYQVD 126 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 6/102 (5%) Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLIEIRVVARSFLHTQIR 199 Q+ G H+F F + R I + DV++ N + ++++ +SFL QIR Sbjct: 376 EIVQNYAGYHNFHCFTKNKVD-QTTFRFIKYLDVSTVNLFNYNFVSVKILGQSFLMHQIR 434 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + L++ + L P EGL Sbjct: 435 KMLTLSVETFRKATSVNSIYYCLKSGEYVPIS-LFPAEGLML 475 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 2/70 (2%) Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A T+ H + R+ LN +L + I + V K F AR Sbjct: 170 ATSTEVRTHNATTQSTALAERKEKEKKFVHLLNEHL--PEDIRCFGMHRVTKSFDARKFC 227 Query: 108 IRRSYLYRII 117 R Y Y Sbjct: 228 SFRLYEYLFP 237 >gi|68487205|ref|XP_712546.1| hypothetical protein CaO19.10981 [Candida albicans SC5314] gi|68487266|ref|XP_712516.1| hypothetical protein CaO19.3477 [Candida albicans SC5314] gi|74679680|sp|Q59S63|PUS1_CANAL RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|46433909|gb|EAK93335.1| hypothetical protein CaO19.3477 [Candida albicans SC5314] gi|46433941|gb|EAK93366.1| hypothetical protein CaO19.10981 [Candida albicans SC5314] Length = 450 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 4/74 (5%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 A RTD GVHA V + + +N L I I + K F R Sbjct: 41 FQRAARTDKGVHAAGNVISLKM--IIEDPEIINKINDLL--PKQIRIWGIQRATKGFDCR 96 Query: 105 FSAIRRSYLYRIIT 118 R Y Y + T Sbjct: 97 KCCSSRIYEYLLPT 110 Score = 52.9 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 8/107 (7%) Query: 143 RIAAQHLVGRHDFTTFRSIHC-QASSPIR-----TIDHFDVNSFGNLIEIRVVARSFLHT 196 R + G H+F F + +S R + V I I++ +SF+ Sbjct: 227 REVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSFMLH 286 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 QIR + LV + Q+ K P AP GL ++ Sbjct: 287 QIRKMIAMAALVVRLSLPCGIINNFFQST--KINIPKAPALGLLLEN 331 >gi|119618937|gb|EAW98531.1| pseudouridylate synthase 1, isoform CRA_b [Homo sapiens] Length = 162 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V IRV +SF+ QIR VG + + G + LE++ K P AP Sbjct: 8 VREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW--GTEKVDVPKAPG 65 Query: 237 EGLYFDSVEYS 247 GL + V + Sbjct: 66 LGLVLERVHFE 76 >gi|328873726|gb|EGG22093.1| hypothetical protein DFA_01983 [Dictyostelium fasciculatum] Length = 604 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 30/179 (16%) Query: 4 YCMIIEYNGSGYFG--WQRQKNGSSIQGSIEKAIFL-------VTGEIVVV--HGAGRTD 52 M+ Y G+G+FG + ++ +++ +EKA+FL G++ + + RTD Sbjct: 156 VAMLFSYVGTGHFGLEYTYEEKYPALENYLEKALFLSGMILPTNFGDVTRIKWSRSSRTD 215 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYL-----KISDTISILNLSIVDKQFHARFSA 107 GVH+L + ++ + + + AY+ + T+ I++++ + F R Sbjct: 216 KGVHSLSTIIGASILINREKIQTKEGVRAYIDQINSYLPPTLHIVSMATTSRSFMPRRQT 275 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIHC 163 R+Y Y + P + L E +G H+FTT R + Sbjct: 276 SSRTYHYVL-----PKKFLGNQFTL------QEINEKILSLFIGTNSYHNFTTLRKTYS 323 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 14/100 (14%) Query: 154 DFTTFRSIHCQASSPIRTIDHFDV----------NSFGNLIEIRVVARSFLHTQIRSFVG 203 D F + + R I F + ++ + SF+ QIR VG Sbjct: 404 DEMNFYKTNVKN---CRKIHSFTIGETFLVESNDQQQEEWVKFMIEGESFIQYQIRKMVG 460 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + V G LE AL+ P+APP+ LY Sbjct: 461 FVLAVCHGLVDVKILEIALKGP-FSINSPIAPPDTLYLYD 499 >gi|297601003|ref|NP_001050239.2| Os03g0381100 [Oryza sativa Japonica Group] gi|255674546|dbj|BAF12153.2| Os03g0381100 [Oryza sativa Japonica Group] Length = 305 Score = 56.4 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y G ++G+ + + +++ I KA+ + + GRTD GV A Sbjct: 94 IALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSA 153 Query: 58 LRQVAH 63 Q Sbjct: 154 TGQEMQ 159 Score = 35.6 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 11/21 (52%) Query: 142 MRIAAQHLVGRHDFTTFRSIH 162 M+ AA +G HD+ F + Sbjct: 158 MQKAALKFIGEHDYRNFCKMD 178 >gi|94502462|ref|ZP_01308886.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94450981|gb|EAT13982.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 66 Score = 56.0 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +F C + I I + + N++ ++ A R+ VG+L +G GK T Sbjct: 1 SFCKKKCNYKTYICKIFNAKWHIKNNILNFKIEANRNKRKMERTMVGTLIELGIGKITIK 60 Query: 217 DLEKAL 222 + L Sbjct: 61 EFINIL 66 >gi|307105485|gb|EFN53734.1| hypothetical protein CHLNCDRAFT_136316 [Chlorella variabilis] Length = 353 Score = 56.0 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 15/86 (17%) Query: 42 IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQF 101 V + AGRTD GVHAL Q +ALNA + + + + V + F Sbjct: 41 TVALAVAGRTDRGVHALGQEV-------------VRALNA--ERPGLLRAWHAAQVPRSF 85 Query: 102 HARFSAIRRSYLYRIITRQAPLALEK 127 HA F+A R YLY + R+ + Sbjct: 86 HATFAAKWRRYLYLLPLREPENGGMR 111 >gi|260889971|ref|ZP_05901234.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] gi|260860577|gb|EEX75077.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] Length = 168 Score = 55.6 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 27/165 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALRQVA 62 Y +EY+G + + N S++ K + +I + AGRTD+ V A + Sbjct: 26 YMFFVEYDGQKFESFDENPNKKSVKSEFRKILENNKIKIFKGIQQAGRTDANVSAKGNIL 85 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + L ++ + I ++ F I + Y Sbjct: 86 YINSKEIIDFSKLKF------LETEGMKINKIARTLP-FLEFPQMIEKRY---------- 128 Query: 123 LALEKGRAWLIPKSL---DCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + PK L D + + + G+ DF F S + Sbjct: 129 ------YIYEYPKKLRKNDEDRINKICNKVSGKKDFYEFTSEKGK 167 >gi|34782865|gb|AAH13427.2| PUS3 protein [Homo sapiens] Length = 253 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 29 RWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 76 >gi|115684700|ref|XP_001197822.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 110 Score = 55.6 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 138 DCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVNSFGN------LIEIRVV 189 + + M A+Q LVG DF F + +RTI ++ + + E + Sbjct: 2 NEKLMNEASQKLVGTFDFRNFCKMDVGNGVVKFVRTIRSAEIRKLDDSSGGFQMCEFTIG 61 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +FL+ Q + L V + + K +A L Y Sbjct: 62 GLAFLYHQ---IIDQLLDV--------------ENEPCKPQYAMAADFPLVLYDCAYE 102 >gi|156082175|ref|XP_001608576.1| pseudouridylate synthase 1 [Plasmodium vivax SaI-1] gi|148801515|gb|EDL42914.1| pseudouridylate synthase 1, putative [Plasmodium vivax] Length = 587 Score = 55.6 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT-----GEIVVV----HGAGRTD 52 +Y + + Y GS Y G Q Q K+ +I+ IE+ + + G + RTD Sbjct: 46 KYALCVGYVGSRYHGCQGQGKDCMTIENEIERTLIKMNAVGGGGRRKNFNFCQSRSARTD 105 Query: 53 SGVHALRQVAHFDLV 67 GVHAL V + + Sbjct: 106 LGVHALYNVFVYQVD 120 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 6/102 (5%) Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLIEIRVVARSFLHTQIR 199 Q G H+F F + + R I + +V++ N + ++++ +SFL QIR Sbjct: 439 EIVQSYAGYHNFHCFTKSKAE-QTTFRFIKYLEVSTVNLHDHNFVSVQILGQSFLMHQIR 497 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + L A + L P EGL Sbjct: 498 KMLTLSVETFRKATCVNSIYYCLNAGEYVPIS-LFPAEGLML 538 Score = 37.5 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 R + LN +L + I ++ V K F AR R Y Y Sbjct: 179 ERTKKEKKFRQLLNEHL--PEDIRCFDMHRVTKSFDARKFCSFRLYEYLFP 227 >gi|56758144|gb|AAW27212.1| unknown [Schistosoma japonicum] Length = 223 Score = 55.2 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 166 SSPIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R I + IR++ +SF+ Q+R +G + + G T D+ Sbjct: 21 KSCYRHIKSVECIPTFLLGEHEYTVIRIIGQSFMLHQVRKMIGLVLGILRGYAT-EDVFD 79 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 + ++R + P AP GL + V++S Sbjct: 80 IVFCKERVDI-PKAPGLGLMLNQVDFS 105 >gi|221504231|gb|EEE29906.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 1512 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + I V FL+ +R VG+L V G+ + D+ AL+ Sbjct: 1359 PQGLRIDFVGNRFLYKMVRKMVGALVQVALGRLSVDDIRCALE 1401 Score = 40.2 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 5/53 (9%) Query: 42 IVVVHGAGRTDSGVHALR---QVAHFDLVREWVPVILCKALNAYLKISDTISI 91 +V+ A RTD GVHA Q + +N L + I Sbjct: 868 PIVLRPASRTDRGVHAAGAICQYVSYYHPLHIPLESFAAGVNRRL--PPDVRI 918 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 8/52 (15%) Query: 136 SLDCENMRIAAQHLVGRHDFTTFR--------SIHCQASSPIRTIDHFDVNS 179 S D + M+ AA+ L G H F FR + H +P T++ ++ Sbjct: 1217 SFDLDEMKQAAKALEGHHSFAAFRCEYSGKEKARHLHRDNPFCTVESVSISP 1268 >gi|237843965|ref|XP_002371280.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|211968944|gb|EEB04140.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|221483763|gb|EEE22075.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 1509 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + I V FL+ +R VG+L V G+ + D+ AL+ Sbjct: 1356 PQGLRIDFVGNRFLYKMVRKMVGALVQVALGRLSVDDIRCALE 1398 Score = 40.2 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 5/53 (9%) Query: 42 IVVVHGAGRTDSGVHALR---QVAHFDLVREWVPVILCKALNAYLKISDTISI 91 +V+ A RTD GVHA Q + +N L + I Sbjct: 865 PIVLRPASRTDRGVHAAGAICQYVSYYHPLHIPLESFAAGVNRRL--PPDVRI 915 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 8/52 (15%) Query: 136 SLDCENMRIAAQHLVGRHDFTTFR--------SIHCQASSPIRTIDHFDVNS 179 S D + M+ AA+ L G H F FR + H +P T++ ++ Sbjct: 1214 SFDLDEMKQAAKALEGHHSFAAFRCEYSGKEKARHLHRDNPFCTVESVSISP 1265 >gi|115937214|ref|XP_001192125.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 130 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 138 DCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVNSFGN------LIEIRVV 189 + + M A+Q LVG DF F + +RTI ++ + + E + Sbjct: 2 NEKLMNEASQKLVGTFDFRNFCKMDVGNGVVKFVRTIRSAEIRKLDDSSGGFQMCEFTIG 61 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +FL+ Q + L V + + K +A L Y Sbjct: 62 GLAFLYHQ---IIDQLLDV--------------ENEPCKPQYAMAADFPLVLYDCAYE 102 >gi|68059255|ref|XP_671610.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56487947|emb|CAH99999.1| conserved hypothetical protein [Plasmodium berghei] Length = 332 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +Y + + Y GS Y G Q Q K +I+ IE+ + + G + + RTD G Sbjct: 29 KYGLCVGYIGSRYHGCQGQGKEYMTIENEIERILTKINAVKKNSKGFNYCLSRSARTDLG 88 Query: 55 VHALRQVAHF 64 VHAL + + Sbjct: 89 VHALYNLFVY 98 >gi|312090526|ref|XP_003146648.1| tRNA pseudouridine synthase A [Loa loa] gi|307758189|gb|EFO17423.1| tRNA pseudouridine synthase A [Loa loa] Length = 238 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + V +SF+ QIR +G G T+LE +++ + P AP GL Sbjct: 25 EFISLYVTGQSFMLHQIRKMIGMTVATFRGLCGKTELENTFRSE--RMDVPKAPGLGLVL 82 Query: 242 DSVEYS 247 D V Y Sbjct: 83 DKVHYE 88 >gi|320531321|ref|ZP_08032295.1| hypothetical protein HMPREF9057_00159 [Actinomyces sp. oral taxon 171 str. F0337] gi|320136470|gb|EFW28444.1| hypothetical protein HMPREF9057_00159 [Actinomyces sp. oral taxon 171 str. F0337] Length = 54 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 T + L A+ R+ P+APP GL + V Y Sbjct: 1 PVTWPGELLAARTRQSAAPVAPPHGLTLEEVTYP 34 >gi|323306932|gb|EGA60216.1| Pus1p [Saccharomyces cerevisiae FostersO] Length = 361 Score = 52.9 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 17/157 (10%) Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 + +F ++ Y +Q A + K R + +G H Sbjct: 73 VPPARDEFDINEEXYQKVKKY----KQLENAHRRRYRICAAK---LAKFRASTSQYLGAH 125 Query: 154 DFTTFR-SIHCQASSPIRTIDHFDVN-------SFGNLIEIRVVARSFLHTQIRSFVGSL 205 +F F + S IR + V+ + I I++ +SF+ QIR V Sbjct: 126 NFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQSFMLHQIRKMVSMA 185 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ + +A Q K P AP GL + Sbjct: 186 TLITRCGCPVERISQAYGQQ--KINIPKAPALGLLLE 220 >gi|296775668|gb|ADH42945.1| hypothetical protein [uncultured SAR11 cluster alpha proteobacterium H17925_23J24] Length = 52 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 25/39 (64%) Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 VGSLK +G+GKW +D +KA ++ R C P AP GL Sbjct: 1 MVGSLKYLGEGKWKLSDFKKAFSSKKRTMCAPPAPAYGL 39 >gi|71746940|ref|XP_822525.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70832193|gb|EAN77697.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 401 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ I + +SFL QIR +G++ + L + + P+ P GL+ Sbjct: 263 EVVRIELSGQSFLFNQIRKMIGTVASMCAAGLPPDYLRDHFLNKAVRCGTPMVPANGLFL 322 Query: 242 D 242 Sbjct: 323 T 323 >gi|326430199|gb|EGD75769.1| hypothetical protein PTSG_07888 [Salpingoeca sp. ATCC 50818] Length = 173 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I+V +SF+ QIR +G V G D+ + P P GLY Sbjct: 2 EWIRIQVKGQSFMLHQIRKMIGMAVAVARGFAVMEDVYSTFNHESVD--VPRIPGLGLYL 59 Query: 242 DSVEYS 247 DSV + Sbjct: 60 DSVFFD 65 >gi|269866935|ref|XP_002652438.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220062500|gb|EED41617.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 107 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF 36 + + I Y+G Y G Q+ NG SI +E A+ Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALR 99 >gi|147812480|emb|CAN72774.1| hypothetical protein VITISV_026284 [Vitis vinifera] Length = 812 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 5/45 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSI-----EKAIFLVTGE 41 RY + +EY G+ + G Q+Q N ++ G++ E + LV+ + Sbjct: 674 QRYLVAVEYIGTRFSGSQQQLNCRTVVGALSGVFSELVLCLVSRK 718 >gi|302837035|ref|XP_002950077.1| hypothetical protein VOLCADRAFT_90550 [Volvox carteri f. nagariensis] gi|300264550|gb|EFJ48745.1| hypothetical protein VOLCADRAFT_90550 [Volvox carteri f. nagariensis] Length = 738 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 8/84 (9%) Query: 167 SPIRTIDHFDVNSFGNLIE-------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + R I HF L+E + V +SF+ IR +G V G L Sbjct: 535 TYYRRIHHFTAADPRPLVEGGTPCLLLEVRGQSFMLHHIRHMIGGAVAVALGLMPKDVLL 594 Query: 220 KALQAQDRKECGPLAPPEGLYFDS 243 +L+ R P APP L Sbjct: 595 GSLEPPAR-VAIPRAPPHTLLLAD 617 >gi|255550749|ref|XP_002516423.1| hypothetical protein RCOM_1427170 [Ricinus communis] gi|223544458|gb|EEF45978.1| hypothetical protein RCOM_1427170 [Ricinus communis] Length = 82 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF 36 + + Y G GY G Q+ SI+G +EKA+F Sbjct: 31 RKIAIFFAYCGVGYQGMQKNPGTKSIEGDLEKALF 65 >gi|303288467|ref|XP_003063522.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455354|gb|EEH52658.1| predicted protein [Micromonas pusilla CCMP1545] Length = 419 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 1/70 (1%) Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + V SF+ QIR + + V G + L R P+AP Sbjct: 213 RPGEPFVRVVVAGDSFVLYQIRKMIATAVGVALGWIPREFIPVTLARPAR-AATPIAPAS 271 Query: 238 GLYFDSVEYS 247 LY E+S Sbjct: 272 TLYLREAEFS 281 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL--EK 127 P + + +NA L + + + K F AR + RR+Y Y + R L + E+ Sbjct: 15 REPGGVVERINAKLPATSGVRVFAAYSAPKSFQARRACARRTYHYLLPARVLGLGVSGER 74 Query: 128 GRAWL------IPKSLDC-ENMRIAAQHLVGRHDFTTFRSI 161 +W S D + R A + G H F + Sbjct: 75 EVSWPGAPGGETRSSEDVLDAFRDALRAFEGSHYFHNYTRR 115 >gi|207093446|ref|ZP_03241233.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_AG0C1] Length = 60 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 +++ +FL + +R + + K T ++E + P+ GLY V Sbjct: 1 FKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-ANGLYLHRVY 59 Query: 246 Y 246 Y Sbjct: 60 Y 60 >gi|108708044|gb|ABF95839.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa Japonica Group] Length = 374 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 18/115 (15%) Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 RA + + + + + A H D TF Q SS I +E+ + Sbjct: 180 RARWLHEPDENDRLN--ASHF---RDILTFSCGELQISSGI------------QFVELTI 222 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR VG+ V G + +L R P+AP E L Sbjct: 223 SGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSR-IVLPIAPSEVLVLRD 276 >gi|262038332|ref|ZP_06011713.1| hypothetical protein HMPREF0554_1185 [Leptotrichia goodfellowii F0264] gi|261747636|gb|EEY35094.1| hypothetical protein HMPREF0554_1185 [Leptotrichia goodfellowii F0264] Length = 288 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 64/205 (31%), Gaps = 56/205 (27%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 + AGRTD V A + + + + N + +I D + I + Sbjct: 51 IQQAGRTDKDVSAKENILYINSKKYIE--------NFHKEI-DGLKIRKIVRTVPFLEFP 101 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL---DCENMRIAAQHLVGRHDFTTFRSI 161 +R Y+Y P++L D E ++ + L G+ +F + S Sbjct: 102 QMVSKRFYIY-----------------EYPQNLIENDEEKIKSNCEKLSGKKNFKKYTSK 144 Query: 162 HCQA-SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + + IR + F N ++ FL Q+R Sbjct: 145 KGEKLKNHIREVF----VRFENG-KLYFEGDGFLPQQVRIMSNF---------------- 183 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVE 245 L + + P E L + VE Sbjct: 184 ILNNKMKSL-----PGEYLTLEKVE 203 >gi|325118855|emb|CBZ54407.1| Pseudouridylate synthase, related [Neospora caninum Liverpool] Length = 822 Score = 48.7 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHFDVNS------FGNLIEIRV 188 E +R + G H F F + R I V++ ++I I + Sbjct: 746 VEKLRAVFKVFEGTHAFQNFTKGGKNKDTSPAAFKRHIHKTSVSTTQMDGVSEDIIVIEL 805 Query: 189 VARSFLHTQIRSFVGSL 205 +SFL QIR V L Sbjct: 806 EGQSFLFNQIRKMVAGL 822 Score = 39.0 bits (90), Expect = 0.63, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%) Query: 72 PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 LNA L I + V K F AR S RR Y + + Sbjct: 448 EAAFLARLNAVL--PPDIRCFAVRRVTKNFDARISCSRRRYAFLLP 491 Score = 38.7 bits (89), Expect = 0.87, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 SSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAHFDL 66 +++G +E+++ G + + A RTD GVHA V L Sbjct: 303 RTVEGVLEESLLAAGGIAPSHLGCLQKLQWSRAARTDRGVHAACNVISLKL 353 >gi|297606314|ref|NP_001058288.2| Os06g0663100 [Oryza sativa Japonica Group] gi|255677299|dbj|BAF20202.2| Os06g0663100 [Oryza sativa Japonica Group] Length = 156 Score = 48.3 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 19/28 (67%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQG 29 + + +++ Y+G + GWQ+Q +++QG Sbjct: 129 VTFKIVLSYHGGSFDGWQKQPGLNTVQG 156 >gi|124783935|gb|ABN14957.1| tRNA pseudouridine synthase A [Taenia asiatica] Length = 123 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 9/64 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGV 55 +++ Y+G G+ G QR + +I+G + A+ ++ A +TD V Sbjct: 60 AILVVYSGVGFCGMQRNEGFRTIEGELMMALCNAGYILEEHMKNPSMICFQRASKTDKNV 119 Query: 56 HALR 59 A Sbjct: 120 SAAG 123 >gi|221121945|ref|XP_002160541.1| PREDICTED: similar to tRNA pseudouridine synthase A [Hydra magnipapillata] Length = 138 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKA-LQAQDRKECGPLAPPEGLYFDSVEYS 247 QIR +G + V G +EK+ LQA+ P AP GL V Y+ Sbjct: 3 HQIRKMIGLVIAVCRGHCPEDTIEKSWLQAK---ADIPKAPGLGLLLCKVFYN 52 >gi|212721194|ref|NP_001132024.1| hypothetical protein LOC100193430 [Zea mays] gi|194693226|gb|ACF80697.1| unknown [Zea mays] Length = 369 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ + SF+ QIR VG+ V G +E +L R P+AP E L Sbjct: 216 QFVELTICGVSFMLHQIRKMVGTAVTVKRGLLPRDIIELSLAKFSR-IVLPIAPSEVLVL 274 Query: 242 DS 243 Sbjct: 275 KD 276 >gi|207093510|ref|ZP_03241297.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_AG0C1] Length = 75 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 7/77 (9%) Query: 124 ALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-- 180 A SLD + A + G+HDF+ F+ ++P R I + Sbjct: 1 PFLAPYIACGDYGSLD--ALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKTFI 58 Query: 181 --GNLIEIRVVARSFLH 195 + +++ +FL Sbjct: 59 IGHECVVFKIIGDAFLR 75 >gi|224002789|ref|XP_002291066.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972842|gb|EED91173.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 798 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%) Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAP 235 + + + FLH Q R +G L + G S +E + P AP Sbjct: 404 IVKNRPFLVFSLTGDVFLHEQARRVIGLLIAICRGVIDSEIIECMFDEEYANLVPAPPAP 463 Query: 236 PEGLY 240 GL Sbjct: 464 SCGLV 468 >gi|320164168|gb|EFW41067.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 210 Score = 45.6 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL 37 + M++ + G+ Y G Q + +I+G + KA Sbjct: 165 RKVAMLVSFVGTRYRGMQYNGDVPTIEGELLKAFAK 200 >gi|226484742|emb|CAX74280.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum] Length = 171 Score = 45.2 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 5/62 (8%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G Q ++ + A+ GRTD GV + Sbjct: 71 IALKLSYLGWQYCGLVPQGCYTLTVMDRLLDALEKAKLIENRNECSFSVCGRTDKGVSGI 130 Query: 59 RQ 60 Q Sbjct: 131 CQ 132 >gi|302857489|ref|XP_002959885.1| hypothetical protein VOLCADRAFT_101403 [Volvox carteri f. nagariensis] gi|300254031|gb|EFJ39049.1| hypothetical protein VOLCADRAFT_101403 [Volvox carteri f. nagariensis] Length = 266 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 16/30 (53%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEK 33 Y + + Y G + GW Q ++QG++E Sbjct: 226 YKVTVSYFGPAFEGWAFQPGRRTLQGALEA 255 >gi|290970931|ref|XP_002668312.1| predicted protein [Naegleria gruberi] gi|284081639|gb|EFC35568.1| predicted protein [Naegleria gruberi] Length = 241 Score = 42.9 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 39/132 (29%) Query: 4 YCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTGE-------------- 41 + + YNG + G Q Q + +I+ + ++ GE Sbjct: 103 FVISFSYNGIPFNGLQIQNGENLVKHPHLLTIEAVLLDILYGSNGESDFEQDETIIRYTK 162 Query: 42 -----IVVVHGAGRTDSGVHALRQVAHFDL----------VREWVPVILCKALNAYLKIS 86 + + A RTD GV A+R + ++ LCK LN +I+ Sbjct: 163 SKNCKDIRLQRACRTDRGVSAVRNAFACVMTLPNTQNHKDTFKFNNEELCKTLND--RIN 220 Query: 87 DTISILNLSIVD 98 + + I NL+++D Sbjct: 221 NHVRIKNLNLMD 232 >gi|237804283|ref|ZP_04591868.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805862|ref|ZP_04592566.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026270|gb|EGI06326.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026970|gb|EGI07025.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 38 Score = 41.7 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 20 RQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRT 51 RQ +G ++Q ++E A+ V V + AGRT Sbjct: 6 RQASGVLTVQETLENALSKVAASPVSLMCAGRT 38 >gi|59634318|gb|AAW88358.1| pseudouridine synthase 1 [Schistosoma japonicum] Length = 170 Score = 41.4 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 Q+R +G + + G T D+ + ++R + P AP GL + V++S Sbjct: 3 HQVRKMIGLVLGILRGYAT-EDVFDIVFCKERVDI-PKAPGLGLMLNQVDFS 52 >gi|330507838|ref|YP_004384266.1| hypothetical protein MCON_1858 [Methanosaeta concilii GP-6] gi|328928646|gb|AEB68448.1| conserved domain protein [Methanosaeta concilii GP-6] Length = 54 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%) Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + L+ +R P AP GL +V Y Sbjct: 21 SWFSDLLR-PERNHGAPTAPAVGLILMNVGYE 51 >gi|114705223|ref|ZP_01438131.1| hypothetical protein FP2506_09801 [Fulvimarina pelagi HTCC2506] gi|114540008|gb|EAU43128.1| hypothetical protein FP2506_09801 [Fulvimarina pelagi HTCC2506] Length = 639 Score = 39.8 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 26/124 (20%) Query: 56 HALR---QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 HA R + + ++L I ++++ V + F A FS ++Y Sbjct: 126 HARRGGRRWDEVMVEARRQAENYARSLPVSHGYPPFILVVDVGNVIEVF-ADFSGQGKNY 184 Query: 113 -------LYRIITRQAPL-ALEKGRA--WLIPKSLD------------CENMRIAAQHLV 150 YRI A+++ A WL P SLD E + A+ L Sbjct: 185 AHFPDRRSYRITMDDLRDEAIQQRLAAIWLDPHSLDPAKKSAEVTRDIAERLARIAKRLE 244 Query: 151 GRHD 154 G+HD Sbjct: 245 GKHD 248 >gi|70928587|ref|XP_736482.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56511054|emb|CAH83189.1| hypothetical protein PC300366.00.0 [Plasmodium chabaudi chabaudi] Length = 80 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 11/79 (13%) Query: 17 GWQRQK-NGSSIQGSIEKAIF---LVTGEIVVVHGAGRTDSGVHALRQVAHF-------D 65 G QK N ++++ + + + L++ RTD GV A Sbjct: 1 GSAYQKDNNNTVENKLIERLHQLDLISDSNCSFSRVSRTDKGVSARMNALTIRLKIKYPH 60 Query: 66 LVREWVPVILCKALNAYLK 84 L + I K LN LK Sbjct: 61 LSISIIEKIYLKELNKKLK 79 >gi|238024399|ref|YP_002908631.1| Non-ribosomal peptide synthase [Burkholderia glumae BGR1] gi|237879064|gb|ACR31396.1| Non-ribosomal peptide synthase [Burkholderia glumae BGR1] Length = 1085 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 4/66 (6%) Query: 112 YLYRIITRQAPLALEKGR----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y YR + + L + ++ A + V HD Sbjct: 9 YQYRFWLEWRLAPHSAAYTTALVYRLIGPLRRDALQQALEAFVHEHDEGCRSVFRDDGGD 68 Query: 168 PIRTID 173 P+R + Sbjct: 69 PVRIVH 74 >gi|78068248|gb|ABB18459.1| malate synthase [Rosa pisocarpa] Length = 161 Score = 38.7 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-----RHDFTTF 158 F R+ +Y++ + R W +P++ + A LVG H++ F Sbjct: 30 TFHDKARNRVYKLNDHNIAKLFVRPRGWHLPEAHILIDGEPATGCLVGFGLYFYHNYAAF 89 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 R + S P + + + + Sbjct: 90 RRTRGEGSGPFFYLPKMEHSREAKIWNCVFE 120 >gi|312865804|ref|ZP_07726026.1| AMP-binding enzyme [Streptococcus downei F0415] gi|311098679|gb|EFQ56901.1| AMP-binding enzyme [Streptococcus downei F0415] Length = 5230 Score = 38.7 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISD-TISILNLSIVD-KQFHARFSAIRRSYLYRI 116 +QV ++ P L + L A ++ + I ++ V+ ++++ A +R Y + Sbjct: 1857 QQVTVAEIFSNTTPEALTELLLAKGQLPETDDQIQKINPVESREYYLTTPAQQRIYTLYM 1916 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF--TTFRSIHCQASSPI 169 + + LA A +I L+ + ++ A Q L+ RHD T+F + + I Sbjct: 1917 MDNKN-LAYNLPSATMITGKLNIDKVKEACQKLIKRHDILRTSFEVVDNEVVQKI 1970 >gi|170698786|ref|ZP_02889849.1| amino acid adenylation domain protein [Burkholderia ambifaria IOP40-10] gi|170136264|gb|EDT04529.1| amino acid adenylation domain protein [Burkholderia ambifaria IOP40-10] Length = 1082 Score = 38.7 bits (89), Expect = 0.81, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 4/66 (6%) Query: 112 YLYRIITRQAPLALEKGR----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y YR + + LD + +R A V HD + + Sbjct: 9 YQYRFWLEWQLNPHSSAYTTALVYRLSGPLDRDALRRALDAFVHEHDEGCRSTFRIDDAR 68 Query: 168 PIRTID 173 +R + Sbjct: 69 VVRDVH 74 >gi|237736444|ref|ZP_04566925.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229421486|gb|EEO36533.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 199 Score = 38.7 bits (89), Expect = 0.85, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 18/104 (17%) Query: 126 EKGRAWLIPKSL---DCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTIDHFDVNSFG 181 + + PK E + + L GR+D + F + IR +D N Sbjct: 33 RREYIYEYPKKRVKNSLEEIEKLCRDLSGRYDVSEFTDKKGLELKEHIREVDISFKNGK- 91 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + SF+ Q+R G + G+ ++AL+ + Sbjct: 92 ----LFFSGNSFMPKQVRIMSGYIL---TGR------KEALEGK 122 >gi|219129852|ref|XP_002185093.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403588|gb|EEC43540.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 870 Score = 38.3 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + +F+ QIR V + G +T +D+ + D P+AP Sbjct: 517 SREEAIAVLEFRGDNFVAQQIRRIVATALAATHG-YTPSDVFEVATRPDVFTKTPIAPGG 575 Query: 238 GLYF 241 LY Sbjct: 576 RLYL 579 >gi|219113940|ref|XP_002176153.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402894|gb|EEC42860.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 870 Score = 38.3 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + +F+ QIR V + G +T +D+ + D P+AP Sbjct: 517 SREEAIAVLEFRGDNFVAQQIRRIVATALAATHG-YTPSDVFEVATRPDVFTKTPIAPGG 575 Query: 238 GLYF 241 LY Sbjct: 576 RLYL 579 >gi|70922772|ref|XP_734499.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56507297|emb|CAH84634.1| hypothetical protein PC301149.00.0 [Plasmodium chabaudi chabaudi] Length = 213 Score = 37.9 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 R+ LN+ L + I ++ V K F AR R Y Y T Sbjct: 110 ERKRKEKKFINLLNSNL--PNDIKCFDIYKVTKSFDARKFCSFRLYEYLFPT 159 >gi|85375485|ref|YP_459547.1| DegT/DnrJ/EryC1/StrS family protein [Erythrobacter litoralis HTCC2594] gi|84788568|gb|ABC64750.1| DegT/DnrJ/EryC1/StrS family protein [Erythrobacter litoralis HTCC2594] Length = 374 Score = 37.5 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 26/146 (17%) Query: 27 IQG----SIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 IQG +E A+ G VV A TD+ AL + +VP Y Sbjct: 31 IQGPEVKELEAALAKFCGAKRVVTCANGTDALQLALMALDIGPGDAVFVPSF------TY 84 Query: 83 LKISDTISILNLSIV-----DKQFHARFS----AIRRSYL---YR----IITRQAPLALE 126 ++ I +L V F+ F AI R+ YR + ++ Sbjct: 85 TATAEVILLLGARPVFVDSDPDTFNICFDSAEKAIERTKAEGKYRAAALMTVDLFGQPVD 144 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGR 152 RA + + D + AAQ G Sbjct: 145 YDRARSLADTHDLAFISDAAQGFGGT 170 >gi|157134892|ref|XP_001656494.1| echinoid [Aedes aegypti] gi|108881354|gb|EAT45579.1| echinoid [Aedes aegypti] Length = 1033 Score = 37.1 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 10/120 (8%) Query: 111 SYLYRIIT--RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 SY + P+A K P+ M+ VG DF+ + Sbjct: 255 SYHCHAVNELGHGPMATIKLEVHQPPQF--IGKMQQHMTKRVGDTDFSASCRAKGKPRPT 312 Query: 169 IRTI-DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +R + D D+ + N+ I L + V S+ V GK + L DR Sbjct: 313 VRWLKDGRDITTDANMYRISTSNNDDLSGMV--IVQSML-VFQGKARPH--KTQLLPSDR 367 >gi|312377644|gb|EFR24427.1| hypothetical protein AND_10993 [Anopheles darlingi] Length = 515 Score = 37.1 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 10/100 (10%) Query: 26 SIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHALRQVAHFDLV-----REWVPVILCK 77 S+Q ++E AI G ++ +GR D V L + F L + +P Sbjct: 300 SVQETLEAAIAPHFGVPEGQLIFSSSGREDVDVRCLGEGRPFVLEIPNALTDQLPEQDAV 359 Query: 78 ALNAYLKISDTISILNLSIV--DKQFHARFSAIRRSYLYR 115 A+ ++ S T+SI +L +V H R + + YR Sbjct: 360 AMEQAVETSGTVSIRDLQLVKRPDLVHIRGNESEKRKFYR 399 >gi|260893437|ref|YP_003239534.1| protein of unknown function DUF72 [Ammonifex degensii KC4] gi|260865578|gb|ACX52684.1| protein of unknown function DUF72 [Ammonifex degensii KC4] Length = 256 Score = 36.7 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 17/123 (13%) Query: 18 WQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV--IL 75 WQ + + +E L+ G V A R F + L Sbjct: 113 WQLPPGARAEEEHLESFCRLLKGHPV-----------ASACRHAFEFRHPSWFREEIYAL 161 Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK 135 + N L +D V F R+ P + A +I + Sbjct: 162 LRRFNFALCWADAPRWPRAEEVTADFVYLRFHGHE----RLYASCYPTEILDRWAQVIRQ 217 Query: 136 SLD 138 LD Sbjct: 218 QLD 220 >gi|78068268|gb|ABB18469.1| malate synthase [Rosa woodsii] Length = 161 Score = 36.3 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-----RHDFTTF 158 F R+ +Y++ + R W +P++ + A LV H++ F Sbjct: 30 TFHDKARNRIYKLNDHNIAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNYAAF 89 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 R + S P + + + + Sbjct: 90 RRTRSEGSGPFFYLPKMEHSREAKIWNCVFE 120 >gi|7378617|emb|CAB83293.1| putative protein [Arabidopsis thaliana] Length = 1022 Score = 36.3 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 1/67 (1%) Query: 72 PVILCKALNAYLKISDTISILNLSIVDKQF-HARFSAIRRSYLYRIITRQAPLALEKGRA 130 P+ +L ++ D+ H + + +Y + + P L + Sbjct: 533 PLHPKHSLQLVSSQPSSVRTRECYCCDEDLAHIFYCCLACNYAMNVACVKKPSVLYRDYT 592 Query: 131 WLIPKSL 137 L Sbjct: 593 RWHEHKL 599 >gi|15242725|ref|NP_195956.1| DC1 domain-containing protein [Arabidopsis thaliana] gi|332003208|gb|AED90591.1| DC1 domain-containing protein [Arabidopsis thaliana] Length = 1610 Score = 36.3 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 1/67 (1%) Query: 72 PVILCKALNAYLKISDTISILNLSIVDKQF-HARFSAIRRSYLYRIITRQAPLALEKGRA 130 P+ +L ++ D+ H + + +Y + + P L + Sbjct: 1247 PLHPKHSLQLVSSQPSSVRTRECYCCDEDLAHIFYCCLACNYAMNVACVKKPSVLYRDYT 1306 Query: 131 WLIPKSL 137 L Sbjct: 1307 RWHEHKL 1313 >gi|237736443|ref|ZP_04566924.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229421485|gb|EEO36532.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 97 Score = 35.6 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y I+Y+G+ + + +++G ++ + + + GRTD+ V A + Sbjct: 14 YMFYIKYDGTKFHSFDEIVGKRTVKGRFKELMNEIGFSWAKGIQQGGRTDAKVSATENIL 73 Query: 63 HF 64 + Sbjct: 74 YV 75 >gi|78068160|gb|ABB18415.1| malate synthase [Rosa blanda] Length = 161 Score = 35.6 bits (81), Expect = 6.9, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-----RHDFTTF 158 F R+ +Y++ + R W +P++ + A LV H++ F Sbjct: 30 TFDDKARNRIYKLNDHNIAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNYAAF 89 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 R + S P + + + + Sbjct: 90 RRTRGEGSGPFFYLPKMEHSREAKIWNCVFE 120 >gi|163881598|gb|ABY48025.1| malate synthase [Rosa woodsii] Length = 161 Score = 35.2 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-----RHDFTTF 158 F R+ +Y++ + R W +P++ + A LV H++ F Sbjct: 30 TFHDKARNRIYKLNDHNIAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNYAAF 89 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 R + S P + + + + Sbjct: 90 RRTRGEGSGPFFYLPKMEHSREAKIWNCVFE 120 >gi|78068150|gb|ABB18410.1| malate synthase [Rosa blanda] gi|78068154|gb|ABB18412.1| malate synthase [Rosa blanda] gi|78068156|gb|ABB18413.1| malate synthase [Rosa blanda] gi|78068158|gb|ABB18414.1| malate synthase [Rosa blanda] gi|78068164|gb|ABB18417.1| malate synthase [Rosa blanda] gi|78068166|gb|ABB18418.1| malate synthase [Rosa blanda] gi|78068168|gb|ABB18419.1| malate synthase [Rosa blanda] gi|78068174|gb|ABB18422.1| malate synthase [Rosa blanda] gi|78068176|gb|ABB18423.1| malate synthase [Rosa blanda] gi|78068178|gb|ABB18424.1| malate synthase [Rosa blanda] gi|78068180|gb|ABB18425.1| malate synthase [Rosa blanda] gi|78068182|gb|ABB18426.1| malate synthase [Rosa blanda] gi|78068186|gb|ABB18428.1| malate synthase [Rosa blanda] gi|78068190|gb|ABB18430.1| malate synthase [Rosa blanda] gi|78068192|gb|ABB18431.1| malate synthase [Rosa blanda] gi|78068194|gb|ABB18432.1| malate synthase [Rosa blanda] gi|78068196|gb|ABB18433.1| malate synthase [Rosa blanda] gi|78068222|gb|ABB18446.1| malate synthase [Rosa nitida] gi|78068256|gb|ABB18463.1| malate synthase [Rosa woodsii] gi|78068264|gb|ABB18467.1| malate synthase [Rosa woodsii] gi|78068270|gb|ABB18470.1| malate synthase [Rosa woodsii] gi|78068272|gb|ABB18471.1| malate synthase [Rosa woodsii] gi|78068276|gb|ABB18473.1| malate synthase [Rosa woodsii] gi|78068278|gb|ABB18474.1| malate synthase [Rosa woodsii] gi|78068280|gb|ABB18475.1| malate synthase [Rosa woodsii] gi|163881590|gb|ABY48021.1| malate synthase [Rosa pisocarpa] gi|163881592|gb|ABY48022.1| malate synthase [Rosa pisocarpa] gi|163881600|gb|ABY48026.1| malate synthase [Rosa woodsii] gi|163881602|gb|ABY48027.1| malate synthase [Rosa woodsii] Length = 161 Score = 35.2 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-----RHDFTTF 158 F R+ +Y++ + R W +P++ + A LV H++ F Sbjct: 30 TFHDKARNRIYKLNDHNIAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNYAAF 89 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 R + S P + + + + Sbjct: 90 RRTRGEGSGPFFYLPKMEHSREAKIWNCVFE 120 >gi|72162583|ref|YP_290240.1| hypothetical protein Tfu_2184 [Thermobifida fusca YX] gi|71916315|gb|AAZ56217.1| conserved hypothetical protein [Thermobifida fusca YX] Length = 288 Score = 35.2 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 11/77 (14%) Query: 30 SIEKAIFLV---------TGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN 80 +E+A+ + AG +GV + + L P + + LN Sbjct: 47 VLERALRRAEVPVAFSAGFSPHPKISYAGAAPTGVASEAEYCELTLAEPMDPERVRERLN 106 Query: 81 AYLKISDTISILNLSIV 97 A + D I+IL++ Sbjct: 107 ATM--PDGIAILDVVPA 121 >gi|78068170|gb|ABB18420.1| malate synthase [Rosa blanda] gi|78068172|gb|ABB18421.1| malate synthase [Rosa blanda] gi|78068260|gb|ABB18465.1| malate synthase [Rosa woodsii] gi|78068262|gb|ABB18466.1| malate synthase [Rosa woodsii] Length = 158 Score = 35.2 bits (80), Expect = 8.3, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-----RHDFTTF 158 F R+ +Y++ + R W +P++ + A LV H++ F Sbjct: 30 TFHDKARNRIYKLNDHNIAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNYAAF 89 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 R + S P + + + + Sbjct: 90 RRTRGEGSGPFFYLPKMEHSREAKIWNCVFE 120 >gi|163881580|gb|ABY48016.1| malate synthase [Rosa foliolosa] Length = 161 Score = 35.2 bits (80), Expect = 9.1, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-----RHDFTTF 158 F R+ +Y++ + R W +P++ + A LV H++ F Sbjct: 30 TFHDKARNRVYKLNDHNIAKLFVRPRGWHLPEAHILIDGEPATSCLVDFGLYFYHNYAAF 89 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 R + S P + + + + Sbjct: 90 RRTQGEGSGPFFYLPKMEHSREAKIWNCVFE 120 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.315 0.158 0.504 Lambda K H 0.267 0.0483 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,066,952,271 Number of Sequences: 14124377 Number of extensions: 210147784 Number of successful extensions: 726109 Number of sequences better than 10.0: 3400 Number of HSP's better than 10.0 without gapping: 5659 Number of HSP's successfully gapped in prelim test: 809 Number of HSP's that attempted gapping in prelim test: 704098 Number of HSP's gapped (non-prelim): 7348 length of query: 247 length of database: 4,842,793,630 effective HSP length: 135 effective length of query: 112 effective length of database: 2,936,002,735 effective search space: 328832306320 effective search space used: 328832306320 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 80 (35.2 bits)